Query 017114
Match_columns 377
No_of_seqs 369 out of 1438
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 09:10:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jjm_A Glycosyl transferase, g 100.0 1.1E-44 3.6E-49 325.2 34.6 335 1-350 43-389 (394)
2 3okp_A GDP-mannose-dependent a 100.0 5.1E-44 1.8E-48 320.8 29.2 331 1-352 33-385 (394)
3 3c48_A Predicted glycosyltrans 100.0 2.2E-43 7.5E-48 321.1 32.6 343 1-349 58-428 (438)
4 3fro_A GLGA glycogen synthase; 100.0 6.8E-44 2.3E-48 324.6 26.6 296 45-348 107-432 (439)
5 2r60_A Glycosyl transferase, g 100.0 5.8E-43 2E-47 323.3 30.1 346 1-352 49-465 (499)
6 2gek_A Phosphatidylinositol ma 100.0 1.1E-42 3.6E-47 313.6 24.5 327 1-351 51-388 (406)
7 1rzu_A Glycogen synthase 1; gl 100.0 7.2E-43 2.5E-47 321.7 18.0 292 52-351 127-480 (485)
8 3s28_A Sucrose synthase 1; gly 100.0 2.6E-41 9E-46 320.2 27.5 343 1-348 326-771 (816)
9 2qzs_A Glycogen synthase; glyc 100.0 1.4E-41 4.7E-46 313.2 24.5 299 45-351 115-481 (485)
10 3oy2_A Glycosyltransferase B73 100.0 1.3E-40 4.6E-45 300.4 23.2 282 43-353 69-397 (413)
11 2iuy_A Avigt4, glycosyltransfe 100.0 2.8E-40 9.5E-45 290.8 20.1 277 1-348 46-337 (342)
12 2iw1_A Lipopolysaccharide core 100.0 5.3E-40 1.8E-44 292.7 14.6 328 1-347 30-372 (374)
13 2x6q_A Trehalose-synthase TRET 100.0 6.3E-39 2.2E-43 289.7 19.8 278 45-347 116-415 (416)
14 3vue_A GBSS-I, granule-bound s 100.0 7.9E-37 2.7E-41 281.1 23.0 287 55-347 153-512 (536)
15 2x0d_A WSAF; GT4 family, trans 100.0 3.2E-36 1.1E-40 269.3 10.1 264 54-348 131-411 (413)
16 2hy7_A Glucuronosyltransferase 100.0 2.1E-35 7.2E-40 264.4 12.6 253 47-347 118-380 (406)
17 1f0k_A MURG, UDP-N-acetylgluco 100.0 1.9E-33 6.6E-38 249.3 21.0 301 1-346 33-357 (364)
18 3beo_A UDP-N-acetylglucosamine 100.0 7.5E-34 2.6E-38 253.0 18.2 279 43-343 83-373 (375)
19 1vgv_A UDP-N-acetylglucosamine 100.0 6.2E-34 2.1E-38 254.3 13.1 289 43-350 74-380 (384)
20 1uqt_A Alpha, alpha-trehalose- 100.0 1.9E-31 6.4E-36 241.3 21.4 276 55-346 123-454 (482)
21 3nb0_A Glycogen [starch] synth 100.0 6.4E-31 2.2E-35 238.5 23.0 293 54-352 180-639 (725)
22 2vsy_A XCC0866; transferase, g 100.0 1.3E-30 4.3E-35 244.7 20.3 264 44-349 271-562 (568)
23 3t5t_A Putative glycosyltransf 100.0 2.9E-29 1E-33 224.0 24.1 276 55-343 149-471 (496)
24 2bfw_A GLGA glycogen synthase; 100.0 1.3E-29 4.3E-34 205.2 16.9 180 145-330 2-200 (200)
25 3qhp_A Type 1 capsular polysac 100.0 1.2E-29 4.1E-34 199.0 15.0 158 174-337 2-166 (166)
26 3rhz_A GTF3, nucleotide sugar 100.0 1.5E-28 5.3E-33 212.1 19.8 262 46-346 64-337 (339)
27 1v4v_A UDP-N-acetylglucosamine 100.0 1E-28 3.4E-33 219.9 14.0 277 44-347 80-365 (376)
28 2f9f_A First mannosyl transfer 99.9 2.3E-27 7.9E-32 187.6 12.3 140 171-314 20-165 (177)
29 2xci_A KDO-transferase, 3-deox 99.9 2.2E-26 7.4E-31 203.5 17.7 243 43-327 99-361 (374)
30 3s2u_A UDP-N-acetylglucosamine 99.9 5.9E-23 2E-27 180.9 24.1 299 1-339 29-352 (365)
31 3ot5_A UDP-N-acetylglucosamine 99.9 4.5E-24 1.5E-28 190.1 15.6 278 41-338 100-388 (403)
32 3dzc_A UDP-N-acetylglucosamine 99.9 6.5E-24 2.2E-28 188.8 15.5 266 41-324 97-380 (396)
33 3otg_A CALG1; calicheamicin, T 99.9 1.5E-22 5E-27 182.3 17.2 266 45-344 120-408 (412)
34 2iyf_A OLED, oleandomycin glyc 99.9 1.8E-21 6.2E-26 176.1 17.6 277 44-347 93-402 (430)
35 4fzr_A SSFS6; structural genom 99.8 1.7E-20 5.8E-25 168.0 11.6 261 45-339 113-396 (398)
36 3ia7_A CALG4; glycosysltransfe 99.8 2.7E-19 9.1E-24 160.5 18.8 274 44-344 91-398 (402)
37 4hwg_A UDP-N-acetylglucosamine 99.8 8.6E-20 2.9E-24 160.9 12.2 277 42-339 81-371 (385)
38 3rsc_A CALG2; TDP, enediyne, s 99.8 9.6E-19 3.3E-23 157.5 18.0 273 44-343 107-412 (415)
39 3tsa_A SPNG, NDP-rhamnosyltran 99.8 3.5E-19 1.2E-23 159.1 13.9 262 44-339 103-384 (391)
40 3oti_A CALG3; calicheamicin, T 99.8 1.2E-17 4E-22 149.5 18.8 262 42-339 117-393 (398)
41 2p6p_A Glycosyl transferase; X 99.7 6.6E-16 2.3E-20 137.5 19.7 260 44-339 96-375 (384)
42 2iya_A OLEI, oleandomycin glyc 99.6 2.4E-14 8.1E-19 129.1 18.2 154 173-339 255-417 (424)
43 2yjn_A ERYCIII, glycosyltransf 99.6 1.7E-14 5.7E-19 130.7 15.5 154 173-339 267-431 (441)
44 3h4t_A Glycosyltransferase GTF 99.5 1.3E-13 4.5E-18 123.2 15.3 152 172-339 220-378 (404)
45 1iir_A Glycosyltransferase GTF 99.5 2.8E-12 9.7E-17 115.1 20.9 136 173-324 238-381 (415)
46 2o6l_A UDP-glucuronosyltransfe 99.5 1.2E-13 4E-18 107.9 10.3 133 172-318 20-161 (170)
47 4amg_A Snogd; transferase, pol 99.5 1.1E-13 3.7E-18 123.8 10.6 153 172-339 236-396 (400)
48 3q3e_A HMW1C-like glycosyltran 99.5 3.3E-12 1.1E-16 116.2 18.5 272 44-351 338-628 (631)
49 1rrv_A Glycosyltransferase GTF 99.4 9.5E-12 3.3E-16 111.7 16.3 136 173-324 237-382 (416)
50 1l5w_A Maltodextrin phosphoryl 99.3 1.1E-10 3.6E-15 108.7 15.9 286 55-347 299-731 (796)
51 2c4m_A Glycogen phosphorylase; 99.3 1.9E-11 6.4E-16 113.7 10.8 231 109-347 395-720 (796)
52 2gj4_A Glycogen phosphorylase, 99.2 5.2E-10 1.8E-14 104.5 18.0 191 109-301 430-707 (824)
53 4gyw_A UDP-N-acetylglucosamine 98.9 4.2E-07 1.4E-11 86.6 23.9 177 172-352 521-711 (723)
54 2acv_A Triterpene UDP-glucosyl 98.8 2.4E-06 8.4E-11 77.3 24.7 129 171-310 274-424 (463)
55 3hbm_A UDP-sugar hydrolase; PS 98.7 1.6E-07 5.5E-12 78.4 13.0 191 44-274 58-252 (282)
56 2vch_A Hydroquinone glucosyltr 98.7 3.3E-05 1.1E-09 70.2 28.9 144 172-325 267-442 (480)
57 2c1x_A UDP-glucose flavonoid 3 98.6 3.6E-06 1.2E-10 76.0 19.4 144 171-327 269-427 (456)
58 1psw_A ADP-heptose LPS heptosy 98.3 4.8E-05 1.7E-09 66.1 17.6 96 172-272 179-286 (348)
59 3hbf_A Flavonoid 3-O-glucosylt 98.3 5.1E-05 1.8E-09 68.0 17.4 203 113-326 212-428 (454)
60 3l7i_A Teichoic acid biosynthe 98.2 2.7E-05 9.2E-10 74.8 15.8 214 112-345 474-717 (729)
61 2pq6_A UDP-glucuronosyl/UDP-gl 98.1 7.6E-05 2.6E-09 67.9 15.9 145 173-327 295-454 (482)
62 3tov_A Glycosyl transferase fa 98.0 0.00052 1.8E-08 59.5 17.3 98 173-275 185-289 (349)
63 2jzc_A UDP-N-acetylglucosamine 97.7 6.9E-05 2.4E-09 59.9 6.8 73 224-308 115-196 (224)
64 2gt1_A Lipopolysaccharide hept 97.0 0.031 1.1E-06 47.8 15.4 134 173-311 178-322 (326)
65 1ygp_A Yeast glycogen phosphor 95.9 0.07 2.4E-06 50.5 11.2 123 172-295 598-761 (879)
66 1xv5_A AGT, DNA alpha-glucosyl 95.8 0.46 1.6E-05 36.6 28.9 304 1-332 31-389 (401)
67 4fyk_A Deoxyribonucleoside 5'- 89.6 2.7 9.3E-05 30.9 8.7 73 237-311 63-142 (152)
68 2nzw_A Alpha1,3-fucosyltransfe 87.6 4.1 0.00014 35.0 9.7 82 234-319 223-308 (371)
69 3jte_A Response regulator rece 84.9 6.7 0.00023 27.9 8.8 108 202-312 4-124 (143)
70 1rcu_A Conserved hypothetical 84.5 1.1 3.8E-05 34.6 4.3 70 237-308 113-192 (195)
71 3h5i_A Response regulator/sens 83.9 9.4 0.00032 27.0 11.5 107 201-310 5-123 (140)
72 3cg4_A Response regulator rece 82.3 10 0.00036 26.7 8.9 107 201-310 7-126 (142)
73 3hzh_A Chemotaxis response reg 81.1 7.8 0.00027 28.2 7.9 65 243-310 84-156 (157)
74 1qkk_A DCTD, C4-dicarboxylate 80.9 13 0.00043 26.9 9.0 107 203-312 5-122 (155)
75 2zay_A Response regulator rece 80.8 7.8 0.00027 27.7 7.8 107 201-310 8-127 (147)
76 3kcn_A Adenylate cyclase homol 80.5 13 0.00043 26.8 8.9 108 202-313 5-125 (151)
77 4f3y_A DHPR, dihydrodipicolina 80.4 2.1 7.2E-05 35.1 4.8 97 175-277 8-108 (272)
78 3ijp_A DHPR, dihydrodipicolina 80.2 2.7 9.2E-05 34.8 5.3 99 173-276 20-122 (288)
79 2rdm_A Response regulator rece 79.7 13 0.00044 25.8 10.2 109 201-311 5-123 (132)
80 3gl9_A Response regulator; bet 79.6 12 0.00043 25.6 8.5 105 203-310 4-121 (122)
81 3grc_A Sensor protein, kinase; 79.1 14 0.00049 25.9 9.7 107 202-311 7-127 (140)
82 3lua_A Response regulator rece 78.9 6.4 0.00022 27.9 6.7 108 202-312 5-128 (140)
83 3nhm_A Response regulator; pro 78.8 14 0.00047 25.7 11.5 106 202-311 5-122 (133)
84 2qzj_A Two-component response 78.7 15 0.0005 25.9 8.9 107 201-310 4-120 (136)
85 3dfz_A SIRC, precorrin-2 dehyd 78.7 22 0.00077 28.0 11.1 105 201-310 54-162 (223)
86 2pln_A HP1043, response regula 78.0 13 0.00045 26.0 8.1 63 243-311 63-133 (137)
87 3uuw_A Putative oxidoreductase 77.8 5.5 0.00019 33.3 6.8 91 174-272 6-96 (308)
88 3ilh_A Two component response 76.6 17 0.00059 25.6 8.8 109 202-313 10-141 (146)
89 2lpm_A Two-component response 76.6 10 0.00034 26.7 6.8 106 201-309 8-120 (123)
90 3ehd_A Uncharacterized conserv 76.1 5.9 0.0002 29.5 5.6 67 238-309 65-161 (162)
91 1k68_A Phytochrome response re 75.3 18 0.00062 25.2 9.2 106 202-310 3-130 (140)
92 1h6d_A Precursor form of gluco 74.9 6.8 0.00023 34.7 6.8 98 172-272 81-180 (433)
93 3i42_A Response regulator rece 73.7 17 0.00057 25.0 7.6 107 202-311 4-122 (127)
94 1dcf_A ETR1 protein; beta-alph 72.9 6.9 0.00024 27.5 5.4 108 201-311 7-129 (136)
95 3to5_A CHEY homolog; alpha(5)b 72.5 23 0.0008 25.2 8.2 110 201-310 12-132 (134)
96 3c3m_A Response regulator rece 72.0 23 0.00077 24.8 8.8 109 203-311 5-123 (138)
97 2khz_A C-MYC-responsive protei 72.0 12 0.00042 27.9 6.7 35 238-273 73-110 (165)
98 3n53_A Response regulator rece 72.0 23 0.00078 24.8 10.7 107 202-312 4-123 (140)
99 3heb_A Response regulator rece 71.7 25 0.00084 25.1 8.5 65 242-309 59-133 (152)
100 1mb3_A Cell division response 71.5 21 0.00072 24.2 7.7 105 203-310 3-120 (124)
101 4hkt_A Inositol 2-dehydrogenas 71.2 17 0.00059 30.6 8.3 88 176-273 5-94 (331)
102 3lte_A Response regulator; str 71.0 18 0.00062 25.0 7.3 107 202-311 7-125 (132)
103 2rjn_A Response regulator rece 70.4 27 0.00092 25.0 9.1 108 201-311 7-126 (154)
104 2qr3_A Two-component system re 70.0 25 0.00086 24.5 8.1 107 202-311 4-126 (140)
105 2iz6_A Molybdenum cofactor car 69.9 5 0.00017 30.4 4.0 68 239-311 104-174 (176)
106 3dty_A Oxidoreductase, GFO/IDH 69.3 22 0.00075 30.9 8.7 96 173-272 11-115 (398)
107 3cea_A MYO-inositol 2-dehydrog 69.2 45 0.0015 28.1 10.6 91 173-272 7-101 (346)
108 2gkg_A Response regulator homo 69.2 14 0.00048 25.2 6.3 74 234-311 39-125 (127)
109 1qo0_D AMIR; binding protein, 69.1 35 0.0012 25.8 12.5 108 200-313 11-127 (196)
110 3rc1_A Sugar 3-ketoreductase; 69.0 16 0.00054 31.2 7.6 92 173-272 26-119 (350)
111 3cg0_A Response regulator rece 68.8 27 0.00091 24.4 8.9 74 234-310 44-127 (140)
112 2jba_A Phosphate regulon trans 68.6 19 0.00065 24.6 6.9 65 243-310 47-121 (127)
113 3kht_A Response regulator; PSI 68.6 28 0.00095 24.5 8.2 107 201-310 5-127 (144)
114 3euw_A MYO-inositol dehydrogen 68.4 31 0.0011 29.1 9.4 90 175-273 5-96 (344)
115 3gt7_A Sensor protein; structu 68.4 30 0.001 24.8 10.0 107 201-310 7-126 (154)
116 1ydw_A AX110P-like protein; st 68.0 24 0.00082 30.2 8.6 96 173-273 5-102 (362)
117 2j48_A Two-component sensor ki 67.9 14 0.00049 24.7 6.1 105 203-310 3-117 (119)
118 3t6k_A Response regulator rece 67.8 28 0.00097 24.3 9.2 107 202-311 5-124 (136)
119 3m2t_A Probable dehydrogenase; 67.1 17 0.00057 31.2 7.4 91 175-272 6-98 (359)
120 3crn_A Response regulator rece 67.1 28 0.00097 24.0 8.7 105 203-310 5-120 (132)
121 3hdg_A Uncharacterized protein 67.0 25 0.00086 24.4 7.4 107 202-311 8-125 (137)
122 2czc_A Glyceraldehyde-3-phosph 66.9 13 0.00043 31.6 6.5 83 190-273 15-110 (334)
123 3e9m_A Oxidoreductase, GFO/IDH 66.8 25 0.00086 29.6 8.4 92 174-273 5-98 (330)
124 1dbw_A Transcriptional regulat 66.5 28 0.00096 23.8 9.7 107 201-310 3-120 (126)
125 1p9l_A Dihydrodipicolinate red 66.5 11 0.00037 30.3 5.6 75 203-277 2-80 (245)
126 2cok_A Poly [ADP-ribose] polym 66.4 6 0.0002 27.4 3.5 64 201-272 13-77 (113)
127 2qxy_A Response regulator; reg 66.2 25 0.00085 24.7 7.3 108 202-312 5-122 (142)
128 3q2i_A Dehydrogenase; rossmann 66.1 28 0.00095 29.6 8.6 91 173-272 12-105 (354)
129 4dad_A Putative pilus assembly 66.0 23 0.0008 25.0 7.1 66 242-310 67-140 (146)
130 3cnb_A DNA-binding response re 65.2 32 0.0011 24.0 8.5 75 234-311 44-130 (143)
131 1xvl_A Mn transporter, MNTC pr 64.8 15 0.00052 30.9 6.5 95 231-327 83-184 (321)
132 1srr_A SPO0F, sporulation resp 64.7 30 0.001 23.5 7.8 105 203-310 5-120 (124)
133 2ho3_A Oxidoreductase, GFO/IDH 64.5 27 0.00092 29.3 8.1 77 191-273 15-93 (325)
134 3kto_A Response regulator rece 64.3 33 0.0011 23.8 7.6 107 202-311 7-126 (136)
135 3eod_A Protein HNR; response r 64.2 32 0.0011 23.6 8.1 108 201-311 7-126 (130)
136 3v5n_A Oxidoreductase; structu 63.9 25 0.00084 30.9 8.0 97 173-273 36-141 (417)
137 3hdv_A Response regulator; PSI 63.4 34 0.0012 23.7 8.7 108 202-312 8-128 (136)
138 3mz0_A Inositol 2-dehydrogenas 63.3 26 0.00088 29.7 7.8 90 176-272 4-96 (344)
139 1zh8_A Oxidoreductase; TM0312, 63.0 23 0.00079 30.0 7.4 94 172-272 16-112 (340)
140 3cfy_A Putative LUXO repressor 62.5 36 0.0012 23.7 9.5 105 203-310 6-121 (137)
141 2b4a_A BH3024; flavodoxin-like 62.5 36 0.0012 23.6 10.5 66 243-312 61-132 (138)
142 1fy2_A Aspartyl dipeptidase; s 62.0 12 0.00039 29.8 5.0 40 234-274 71-121 (229)
143 3snk_A Response regulator CHEY 62.0 20 0.00068 25.0 6.0 65 243-310 60-132 (135)
144 1s8n_A Putative antiterminator 61.4 51 0.0017 25.0 10.3 68 243-313 59-133 (205)
145 3e82_A Putative oxidoreductase 61.3 29 0.001 29.7 7.9 90 173-272 6-97 (364)
146 3m6m_D Sensory/regulatory prot 61.2 40 0.0014 23.7 10.1 108 201-311 14-136 (143)
147 3rqi_A Response regulator prot 61.2 22 0.00074 26.7 6.4 107 202-311 8-125 (184)
148 2gwr_A DNA-binding response re 60.8 58 0.002 25.5 9.8 106 202-310 6-121 (238)
149 3hv2_A Response regulator/HD d 60.5 43 0.0015 23.9 10.5 75 234-311 48-133 (153)
150 4had_A Probable oxidoreductase 60.5 18 0.00061 30.7 6.3 93 173-272 22-116 (350)
151 3ohs_X Trans-1,2-dihydrobenzen 60.3 18 0.0006 30.6 6.2 78 191-273 16-97 (334)
152 3e18_A Oxidoreductase; dehydro 59.9 47 0.0016 28.3 8.9 89 174-272 5-95 (359)
153 1k66_A Phytochrome response re 59.8 42 0.0014 23.5 9.1 66 242-310 62-137 (149)
154 3db2_A Putative NADPH-dependen 58.1 22 0.00077 30.2 6.6 91 174-273 5-97 (354)
155 2f62_A Nucleoside 2-deoxyribos 58.0 45 0.0015 24.7 7.3 37 237-273 62-105 (161)
156 1xea_A Oxidoreductase, GFO/IDH 58.0 36 0.0012 28.5 7.7 90 176-272 4-93 (323)
157 3mm4_A Histidine kinase homolo 57.8 51 0.0018 25.2 8.1 66 242-312 119-197 (206)
158 4ew6_A D-galactose-1-dehydroge 57.6 14 0.00047 31.3 5.0 86 173-273 24-112 (330)
159 2k6g_A Replication factor C su 57.5 36 0.0012 23.2 6.2 38 173-211 34-80 (109)
160 3r0j_A Possible two component 57.3 70 0.0024 25.3 9.3 65 243-310 68-140 (250)
161 3u3x_A Oxidoreductase; structu 57.3 51 0.0017 28.1 8.7 93 173-273 25-119 (361)
162 2qvg_A Two component response 56.9 47 0.0016 23.1 7.9 104 201-309 7-133 (143)
163 1p2f_A Response regulator; DRR 56.7 36 0.0012 26.2 7.2 104 203-310 4-116 (220)
164 1f06_A MESO-diaminopimelate D- 56.4 23 0.00079 29.7 6.2 86 175-274 4-90 (320)
165 3gdo_A Uncharacterized oxidore 55.9 32 0.0011 29.3 7.2 89 174-272 5-95 (358)
166 3moi_A Probable dehydrogenase; 55.5 20 0.00067 31.1 5.8 90 175-272 3-94 (387)
167 1jbe_A Chemotaxis protein CHEY 55.4 46 0.0016 22.6 9.3 74 234-310 39-124 (128)
168 1ys7_A Transcriptional regulat 54.7 72 0.0025 24.7 11.5 106 202-310 8-124 (233)
169 3ec7_A Putative dehydrogenase; 54.2 30 0.001 29.5 6.7 93 173-272 22-117 (357)
170 2pl1_A Transcriptional regulat 53.9 47 0.0016 22.2 8.7 73 234-309 34-116 (121)
171 3h1g_A Chemotaxis protein CHEY 53.6 51 0.0017 22.6 8.7 107 202-311 6-127 (129)
172 3ezy_A Dehydrogenase; structur 53.6 32 0.0011 29.1 6.8 90 176-273 4-95 (344)
173 4e7p_A Response regulator; DNA 53.3 57 0.0019 23.1 9.7 66 243-311 67-140 (150)
174 1toa_A Tromp-1, protein (perip 52.9 37 0.0013 28.4 6.8 91 235-327 80-177 (313)
175 1l7b_A DNA ligase; BRCT, autos 52.8 19 0.00065 23.7 4.0 16 256-271 55-70 (92)
176 1i3c_A Response regulator RCP1 52.4 59 0.002 23.0 10.3 105 202-309 9-135 (149)
177 2qsj_A DNA-binding response re 52.3 36 0.0012 24.2 6.1 107 202-311 4-124 (154)
178 3c97_A Signal transduction his 52.3 56 0.0019 22.7 12.0 107 202-311 11-130 (140)
179 1dih_A Dihydrodipicolinate red 51.8 11 0.00038 30.9 3.4 42 234-275 64-105 (273)
180 1tlt_A Putative oxidoreductase 51.6 18 0.00062 30.3 4.8 88 175-272 6-95 (319)
181 3hh8_A Metal ABC transporter s 51.3 42 0.0014 27.8 6.8 94 232-326 56-162 (294)
182 3f6p_A Transcriptional regulat 51.3 53 0.0018 22.1 9.1 105 203-310 4-118 (120)
183 2prs_A High-affinity zinc upta 51.0 22 0.00076 29.2 5.1 93 235-327 41-156 (284)
184 3kux_A Putative oxidoreductase 50.3 45 0.0015 28.3 7.2 90 173-272 6-97 (352)
185 3c1a_A Putative oxidoreductase 50.0 51 0.0017 27.4 7.4 89 173-272 9-99 (315)
186 3f6c_A Positive transcription 49.6 60 0.002 22.2 9.1 107 202-311 2-120 (134)
187 3n0r_A Response regulator; sig 49.5 1.1E+02 0.0036 25.1 12.0 107 200-310 159-276 (286)
188 3i23_A Oxidoreductase, GFO/IDH 49.2 51 0.0017 27.9 7.3 76 191-271 17-94 (349)
189 1yio_A Response regulatory pro 49.1 83 0.0029 23.8 11.6 107 202-311 5-122 (208)
190 3ujp_A Mn transporter subunit; 49.1 37 0.0013 28.3 6.2 96 230-327 68-170 (307)
191 3q9s_A DNA-binding response re 49.1 75 0.0026 25.2 8.0 65 243-310 82-153 (249)
192 2vt3_A REX, redox-sensing tran 49.0 44 0.0015 26.1 6.2 43 234-276 137-179 (215)
193 2ebu_A Replication factor C su 48.8 61 0.0021 22.3 6.2 11 174-184 25-35 (112)
194 3evn_A Oxidoreductase, GFO/IDH 48.5 36 0.0012 28.6 6.2 91 175-273 6-98 (329)
195 1zgz_A Torcad operon transcrip 48.3 59 0.002 21.8 8.6 104 203-309 4-117 (122)
196 3a10_A Response regulator; pho 47.6 58 0.002 21.5 9.7 104 203-309 3-115 (116)
197 2glx_A 1,5-anhydro-D-fructose 47.4 91 0.0031 26.0 8.6 74 193-272 17-92 (332)
198 2qv0_A Protein MRKE; structura 47.3 69 0.0023 22.3 8.3 106 202-310 10-126 (143)
199 3fhl_A Putative oxidoreductase 47.3 38 0.0013 28.9 6.2 88 174-272 5-95 (362)
200 3gi1_A LBP, laminin-binding pr 45.7 24 0.00084 29.0 4.6 96 230-327 48-161 (286)
201 1tmy_A CHEY protein, TMY; chem 45.6 65 0.0022 21.4 8.6 104 203-309 4-119 (120)
202 3l3e_A DNA topoisomerase 2-bin 45.1 60 0.002 21.8 5.8 65 200-272 17-82 (107)
203 3l4e_A Uncharacterized peptida 45.1 55 0.0019 25.3 6.3 40 233-273 70-120 (206)
204 2o1e_A YCDH; alpha-beta protei 44.8 55 0.0019 27.3 6.6 93 234-327 62-172 (312)
205 1p6q_A CHEY2; chemotaxis, sign 43.6 73 0.0025 21.5 8.7 106 202-310 7-126 (129)
206 2r25_B Osmosensing histidine p 42.1 81 0.0028 21.6 9.0 65 243-310 53-126 (133)
207 2d8m_A DNA-repair protein XRCC 42.1 87 0.003 21.9 6.5 62 200-272 24-86 (129)
208 1eiw_A Hypothetical protein MT 41.4 44 0.0015 22.9 4.5 68 238-310 34-109 (111)
209 2dc1_A L-aspartate dehydrogena 41.4 27 0.00093 27.6 4.1 41 234-274 41-82 (236)
210 2hqr_A Putative transcriptiona 41.4 48 0.0016 25.6 5.6 72 234-311 34-115 (223)
211 3kb6_A D-lactate dehydrogenase 41.3 71 0.0024 27.0 6.8 42 234-275 186-232 (334)
212 3bio_A Oxidoreductase, GFO/IDH 40.9 36 0.0012 28.3 4.9 86 174-272 9-95 (304)
213 2vqe_B 30S ribosomal protein S 40.5 1.4E+02 0.0047 24.1 7.9 33 55-88 158-190 (256)
214 4g2n_A D-isomer specific 2-hyd 40.2 1.3E+02 0.0045 25.5 8.3 40 234-273 219-263 (345)
215 4gmf_A Yersiniabactin biosynth 40.2 50 0.0017 28.4 5.8 91 172-272 5-100 (372)
216 2ixa_A Alpha-N-acetylgalactosa 40.0 1.3E+02 0.0046 26.4 8.8 95 173-272 19-121 (444)
217 3cx3_A Lipoprotein; zinc-bindi 39.6 37 0.0013 27.9 4.8 92 235-327 51-159 (284)
218 3lkv_A Uncharacterized conserv 39.5 1.6E+02 0.0053 24.1 12.9 150 108-273 61-227 (302)
219 1w25_A Stalked-cell differenti 38.9 1.7E+02 0.0057 25.7 9.3 107 203-312 3-122 (459)
220 1dc7_A NTRC, nitrogen regulati 38.7 74 0.0025 21.2 5.7 104 203-309 5-119 (124)
221 1mvo_A PHOP response regulator 37.9 95 0.0032 21.2 9.6 106 203-311 5-121 (136)
222 2h1q_A Hypothetical protein; Z 37.7 93 0.0032 25.3 6.7 74 231-307 175-253 (270)
223 3ju3_A Probable 2-oxoacid ferr 37.1 86 0.0029 21.6 5.7 67 226-309 48-116 (118)
224 2dt5_A AT-rich DNA-binding pro 37.1 1.1E+02 0.0038 23.7 6.8 94 181-275 56-173 (211)
225 1dz3_A Stage 0 sporulation pro 36.9 97 0.0033 21.0 8.2 106 203-311 4-123 (130)
226 3l5o_A Uncharacterized protein 36.7 89 0.0031 25.4 6.4 76 229-306 173-252 (270)
227 1lc0_A Biliverdin reductase A; 36.6 78 0.0027 26.0 6.3 39 234-272 55-95 (294)
228 1cf2_P Protein (glyceraldehyde 36.6 1.1E+02 0.0037 25.8 7.3 83 190-273 14-109 (337)
229 4ekn_B Aspartate carbamoyltran 36.5 47 0.0016 27.7 4.8 138 108-256 88-233 (306)
230 2a9o_A Response regulator; ess 36.4 92 0.0031 20.6 9.3 74 234-310 35-117 (120)
231 1kgs_A DRRD, DNA binding respo 36.2 1.4E+02 0.0049 22.7 9.1 105 203-310 4-119 (225)
232 1s2d_A Purine trans deoxyribos 35.6 33 0.0011 25.6 3.4 36 238-273 77-116 (167)
233 2z2v_A Hypothetical protein PH 35.6 1.5E+02 0.0052 25.3 8.1 94 173-273 15-108 (365)
234 3luf_A Two-component system re 35.5 1.7E+02 0.0057 23.3 10.5 108 200-310 123-244 (259)
235 3eul_A Possible nitrate/nitrit 35.2 1.2E+02 0.0039 21.4 9.3 66 243-311 62-135 (152)
236 3pp8_A Glyoxylate/hydroxypyruv 35.1 1.5E+02 0.0053 24.6 7.9 39 234-272 185-228 (315)
237 3b2n_A Uncharacterized protein 35.0 1.1E+02 0.0037 20.9 8.2 75 234-311 39-123 (133)
238 3jtm_A Formate dehydrogenase, 35.0 1.7E+02 0.0057 24.9 8.2 42 234-275 212-258 (351)
239 1xhf_A DYE resistance, aerobic 34.9 1E+02 0.0034 20.5 9.9 104 203-309 5-118 (123)
240 3csu_A Protein (aspartate carb 34.6 63 0.0022 26.9 5.3 133 107-251 89-230 (310)
241 3ip3_A Oxidoreductase, putativ 33.5 66 0.0023 27.0 5.5 92 174-271 2-96 (337)
242 1ny5_A Transcriptional regulat 33.0 2.2E+02 0.0077 24.4 8.9 76 234-312 34-119 (387)
243 2oqr_A Sensory transduction pr 32.8 1.2E+02 0.0042 23.3 6.7 107 202-311 5-121 (230)
244 3bbn_B Ribosomal protein S2; s 32.4 1.1E+02 0.0038 24.2 6.1 33 55-88 157-189 (231)
245 1t35_A Hypothetical protein YV 31.2 45 0.0015 25.5 3.7 39 236-276 91-137 (191)
246 2nu8_A Succinyl-COA ligase [AD 30.8 1.1E+02 0.0038 25.1 6.2 37 234-270 54-92 (288)
247 3o9z_A Lipopolysaccaride biosy 30.6 97 0.0033 25.7 6.0 70 202-271 4-101 (312)
248 3h75_A Periplasmic sugar-bindi 30.6 2.3E+02 0.008 23.5 10.7 56 177-232 181-242 (350)
249 3qk7_A Transcriptional regulat 30.4 2.1E+02 0.0073 23.0 8.8 43 45-88 55-97 (294)
250 3cz5_A Two-component response 30.2 1.4E+02 0.0049 20.9 12.7 107 201-310 5-124 (153)
251 3klo_A Transcriptional regulat 30.0 1.4E+02 0.0047 22.9 6.6 69 242-310 54-128 (225)
252 3kip_A 3-dehydroquinase, type 29.8 97 0.0033 22.9 4.9 65 242-310 83-157 (167)
253 3qy9_A DHPR, dihydrodipicolina 29.8 29 0.001 27.8 2.5 40 234-276 47-86 (243)
254 3oa2_A WBPB; oxidoreductase, s 29.6 1.1E+02 0.0037 25.5 6.1 91 175-272 4-103 (318)
255 2nvw_A Galactose/lactose metab 29.6 91 0.0031 27.9 5.9 98 173-273 38-145 (479)
256 1l0b_A BRCA1; TANDEM-BRCT, thr 29.5 83 0.0028 24.5 5.2 17 256-272 58-74 (229)
257 1f8y_A Nucleoside 2-deoxyribos 29.5 43 0.0015 24.6 3.2 36 238-273 74-113 (157)
258 2zkq_b 40S ribosomal protein S 29.1 1.8E+02 0.0063 23.9 7.0 80 200-281 70-157 (295)
259 3sqd_A PAX-interacting protein 29.0 49 0.0017 25.9 3.6 31 241-273 48-78 (219)
260 1qv9_A F420-dependent methylen 28.8 30 0.001 27.3 2.2 100 177-296 8-121 (283)
261 3fx7_A Putative uncharacterize 28.8 55 0.0019 21.6 3.1 57 293-352 6-63 (94)
262 3k4h_A Putative transcriptiona 28.0 2.3E+02 0.0079 22.6 8.7 43 45-88 59-101 (292)
263 3h05_A Uncharacterized protein 27.8 1E+02 0.0035 23.1 5.1 66 188-268 85-151 (177)
264 2ayx_A Sensor kinase protein R 27.8 2.2E+02 0.0077 22.4 10.3 65 243-310 174-246 (254)
265 3av3_A Phosphoribosylglycinami 27.6 66 0.0022 25.0 4.1 22 45-66 72-93 (212)
266 3gd5_A Otcase, ornithine carba 27.0 2.4E+02 0.0082 23.6 7.6 127 108-251 95-234 (323)
267 3eqz_A Response regulator; str 27.0 1.5E+02 0.005 20.0 6.4 106 202-312 4-126 (135)
268 3g5o_A Uncharacterized protein 26.8 1.1E+02 0.0039 20.6 4.7 70 257-338 21-93 (108)
269 4fb5_A Probable oxidoreductase 26.5 2.8E+02 0.0094 23.5 8.5 92 173-271 24-123 (393)
270 1meo_A Phosophoribosylglycinam 26.4 92 0.0031 24.2 4.7 22 45-66 69-90 (209)
271 3dbi_A Sugar-binding transcrip 26.4 2.7E+02 0.0093 22.9 8.9 34 177-210 218-251 (338)
272 2lnd_A De novo designed protei 26.3 52 0.0018 20.6 2.6 47 264-310 49-100 (112)
273 3av3_A Phosphoribosylglycinami 26.0 1.5E+02 0.005 23.0 5.8 14 295-308 162-175 (212)
274 3nbm_A PTS system, lactose-spe 25.8 1.5E+02 0.0051 20.0 5.2 39 234-273 45-85 (108)
275 3ffs_A Inosine-5-monophosphate 25.1 45 0.0015 29.0 3.0 68 242-309 12-88 (400)
276 2pi1_A D-lactate dehydrogenase 25.1 1.8E+02 0.0061 24.5 6.6 75 203-279 2-77 (334)
277 3tqr_A Phosphoribosylglycinami 24.9 87 0.003 24.4 4.3 23 44-66 72-94 (215)
278 3mfq_A TROA, high-affinity zin 24.9 1.7E+02 0.0058 23.9 6.3 90 234-327 47-143 (282)
279 1pq4_A Periplasmic binding pro 24.8 2E+02 0.0068 23.6 6.8 36 235-271 44-81 (291)
280 3cu5_A Two component transcrip 24.7 1.7E+02 0.006 20.1 10.9 74 234-310 39-122 (141)
281 3bch_A 40S ribosomal protein S 24.4 2.7E+02 0.0094 22.3 7.5 127 183-317 82-219 (253)
282 3btv_A Galactose/lactose metab 24.4 97 0.0033 27.3 5.1 96 174-272 20-125 (438)
283 3kcq_A Phosphoribosylglycinami 24.3 1.1E+02 0.0039 23.8 4.9 23 45-67 72-94 (215)
284 4aty_A Terephthalate 1,2-CIS-d 24.1 55 0.0019 27.9 3.3 76 222-310 255-340 (349)
285 1ml4_A Aspartate transcarbamoy 24.0 1.1E+02 0.0036 25.5 4.9 137 108-256 92-236 (308)
286 3h75_A Periplasmic sugar-bindi 23.6 1.7E+02 0.0058 24.4 6.4 41 235-275 52-95 (350)
287 1zh2_A KDP operon transcriptio 23.4 1.6E+02 0.0055 19.3 9.2 104 203-309 3-116 (121)
288 2vxb_A DNA repair protein RHP9 23.4 1.1E+02 0.0038 24.3 4.8 19 254-272 78-96 (241)
289 3lxy_A 4-hydroxythreonine-4-ph 23.2 50 0.0017 27.8 2.8 77 223-309 240-326 (334)
290 2l2q_A PTS system, cellobiose- 23.1 1.7E+02 0.0059 19.6 5.1 56 214-271 22-81 (109)
291 1b0a_A Protein (fold bifunctio 23.1 3.1E+02 0.011 22.5 7.4 60 191-251 145-211 (288)
292 1vm6_A DHPR, dihydrodipicolina 22.8 57 0.002 25.7 2.9 39 241-279 52-90 (228)
293 3p2y_A Alanine dehydrogenase/p 22.6 2.1E+02 0.0073 24.6 6.6 46 234-279 257-310 (381)
294 3u80_A 3-dehydroquinate dehydr 22.5 1.4E+02 0.0048 21.7 4.6 65 241-309 69-146 (151)
295 1t15_A Breast cancer type 1 su 22.4 1.1E+02 0.0037 23.5 4.5 17 256-272 55-71 (214)
296 3r8n_B 30S ribosomal protein S 22.3 1.5E+02 0.0051 23.2 5.1 34 55-89 149-182 (218)
297 3egc_A Putative ribose operon 22.1 1.9E+02 0.0066 23.1 6.3 33 178-210 163-195 (291)
298 4dgs_A Dehydrogenase; structur 22.0 2.7E+02 0.0092 23.5 7.1 75 201-275 171-260 (340)
299 1wls_A L-asparaginase; structu 21.8 1.5E+02 0.005 25.0 5.4 47 41-87 57-109 (328)
300 1tvm_A PTS system, galactitol- 21.7 57 0.0019 22.3 2.4 18 234-251 61-78 (113)
301 3al2_A DNA topoisomerase 2-bin 21.7 1.3E+02 0.0046 23.7 4.9 31 241-273 44-74 (235)
302 1vl6_A Malate oxidoreductase; 21.2 2.5E+02 0.0086 24.2 6.7 36 234-270 255-290 (388)
303 3eh7_A 4-hydroxybutyrate COA-t 21.1 68 0.0023 28.3 3.3 30 295-325 403-432 (434)
304 3da8_A Probable 5'-phosphoribo 21.1 72 0.0025 24.9 3.2 22 44-65 78-99 (215)
305 1vli_A Spore coat polysacchari 20.7 2E+02 0.007 24.7 6.1 61 212-273 102-165 (385)
306 2i9n_A MHB4A peptide; beta-hai 20.7 34 0.0012 16.5 0.7 13 254-266 21-33 (33)
307 1vi6_A 30S ribosomal protein S 20.7 3E+02 0.01 21.3 8.5 94 186-281 50-154 (208)
308 4b4t_W RPN10, 26S proteasome r 20.4 69 0.0024 26.0 3.0 24 292-315 219-242 (268)
309 3dff_A Teicoplanin pseudoaglyc 20.4 1.8E+02 0.0062 23.5 5.6 42 43-84 136-184 (273)
310 2c2x_A Methylenetetrahydrofola 20.4 2.9E+02 0.01 22.5 6.7 59 192-251 145-212 (281)
311 1pg5_A Aspartate carbamoyltran 20.3 1.4E+02 0.0047 24.7 4.8 128 108-251 86-222 (299)
312 3oqb_A Oxidoreductase; structu 20.1 96 0.0033 26.5 4.1 39 234-272 73-113 (383)
313 1oth_A Protein (ornithine tran 20.1 3.8E+02 0.013 22.4 8.6 126 108-250 93-231 (321)
No 1
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=1.1e-44 Score=325.17 Aligned_cols=335 Identities=21% Similarity=0.346 Sum_probs=262.7
Q ss_pred CCcEEEEEeeCCCCC--ccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhh
Q 017114 1 MGDEVMVVTTHEGVP--QEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLL 78 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~ 78 (377)
+||+|+|++...... ....++.+..+.....+.+....+.+.....+.+.+++.+||+||+++.....+.+++..+..
T Consensus 43 ~G~~V~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~ 122 (394)
T 2jjm_A 43 RGHEIHFITSGLPFRLNKVYPNIYFHEVTVNQYSVFQYPPYDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMI 122 (394)
T ss_dssp TTCEEEEECSSCC----CCCTTEEEECCCCC----CCSCCHHHHHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCCcccccCCceEEEecccccccccccccccHHHHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhh
Confidence 599999999865321 233455554444333332333334455567788999999999999997654444444444444
Q ss_pred --CCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCC
Q 017114 79 --CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHP 156 (377)
Q Consensus 79 --~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~ 156 (377)
++|+|++.|+........ ......+.+.+++.+|.++++|+..++.+.+.++. ..++.++|||+|.+.+.+
T Consensus 123 ~~~~p~v~~~h~~~~~~~~~------~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~-~~~~~vi~ngv~~~~~~~ 195 (394)
T 2jjm_A 123 GERIKIVTTLHGTDITVLGS------DPSLNNLIRFGIEQSDVVTAVSHSLINETHELVKP-NKDIQTVYNFIDERVYFK 195 (394)
T ss_dssp TTCSEEEEECCHHHHHTTTT------CTTTHHHHHHHHHHSSEEEESCHHHHHHHHHHTCC-SSCEEECCCCCCTTTCCC
T ss_pred cCCCCEEEEEecCcccccCC------CHHHHHHHHHHHhhCCEEEECCHHHHHHHHHhhCC-cccEEEecCCccHHhcCC
Confidence 599999999853321111 12234567888999999999999999999988763 578999999999988876
Q ss_pred ccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC---CCceEEEEecCccHHHHHHhhcCC----CEEEcc
Q 017114 157 RFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL---PEARIAFIGDGPYREELEKMFTGM----PAVFTG 229 (377)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l---~~~~l~i~G~g~~~~~l~~~~~~~----~v~~~g 229 (377)
.. ....+.++.. ++++++++|+|++.+.||++.+++|++.+ ++++++|+|+|+..+.+++++.+. +|.+.|
T Consensus 196 ~~-~~~~~~~~~~-~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g 273 (394)
T 2jjm_A 196 RD-MTQLKKEYGI-SESEKILIHISNFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLG 273 (394)
T ss_dssp CC-CHHHHHHTTC-C---CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCB
T ss_pred cc-hHHHHHHcCC-CCCCeEEEEeeccccccCHHHHHHHHHHHHhhCCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeC
Confidence 52 2334444432 25678999999999999999999999887 468999999999888888887653 699999
Q ss_pred ccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 230 MLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 230 ~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
+ .+++..+|+.||++|+||..|++|++++|||+||+|||+++.++..+++ .++.+|++++++|+++++++|.+++
T Consensus 274 ~--~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~~~e~v---~~~~~g~~~~~~d~~~la~~i~~l~ 348 (394)
T 2jjm_A 274 K--QDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVI---QHGDTGYLCEVGDTTGVADQAIQLL 348 (394)
T ss_dssp S--CSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEEECCTTSTTTC---CBTTTEEEECTTCHHHHHHHHHHHH
T ss_pred c--hhhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEEecCCChHHHh---hcCCceEEeCCCCHHHHHHHHHHHH
Confidence 6 4899999999999999999999999999999999999999999999999 8888999999999999999999999
Q ss_pred hCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHH
Q 017114 310 YNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWFW 350 (377)
Q Consensus 310 ~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~~~~~~ 350 (377)
+|++.++++++++++.+ ++|+|+.+++++. .+|+++++..
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~ 389 (394)
T 2jjm_A 349 KDEELHRNMGERARESVYEQFRSEKIVSQYE-TIYYDVLRDD 389 (394)
T ss_dssp HCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHTC---
T ss_pred cCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhhh
Confidence 99999999999999998 7899999999999 6999987654
No 2
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=5.1e-44 Score=320.85 Aligned_cols=331 Identities=21% Similarity=0.298 Sum_probs=265.8
Q ss_pred CCcEEEEEeeCCCCC--c---cccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHH
Q 017114 1 MGDEVMVVTTHEGVP--Q---EFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIA 75 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~ 75 (377)
+||+|+|++...... . ...++.+.+..... ..........+.+.+++.+||+||+++.....+... ++
T Consensus 33 ~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~-~~ 105 (394)
T 3okp_A 33 DPESIVVFASTQNAEEAHAYDKTLDYEVIRWPRSV------MLPTPTTAHAMAEIIREREIDNVWFGAAAPLALMAG-TA 105 (394)
T ss_dssp CGGGEEEEEECSSHHHHHHHHTTCSSEEEEESSSS------CCSCHHHHHHHHHHHHHTTCSEEEESSCTTGGGGHH-HH
T ss_pred cCCeEEEEECCCCccchhhhccccceEEEEccccc------cccchhhHHHHHHHHHhcCCCEEEECCcchHHHHHH-HH
Confidence 489999999887533 1 23344444443211 112235567889999999999999998655544433 45
Q ss_pred HhhCCC-EEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCC
Q 017114 76 KLLCVP-IVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESF 154 (377)
Q Consensus 76 ~~~~~~-~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~ 154 (377)
+..++| +|++.|+..... ......+...+.+++.+|.++++|+..++.+.+.++ ...++.++|||+|.+.+
T Consensus 106 ~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~-~~~~~~vi~ngv~~~~~ 177 (394)
T 3okp_A 106 KQAGASKVIASTHGHEVGW-------SMLPGSRQSLRKIGTEVDVLTYISQYTLRRFKSAFG-SHPTFEHLPSGVDVKRF 177 (394)
T ss_dssp HHTTCSEEEEECCSTHHHH-------TTSHHHHHHHHHHHHHCSEEEESCHHHHHHHHHHHC-SSSEEEECCCCBCTTTS
T ss_pred HhcCCCcEEEEeccchhhh-------hhcchhhHHHHHHHHhCCEEEEcCHHHHHHHHHhcC-CCCCeEEecCCcCHHHc
Confidence 667887 888999854311 122344567788899999999999999999999876 45799999999999988
Q ss_pred CCccCc--hHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCccHHHHHHhhcC--CCEE
Q 017114 155 HPRFRS--SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTG--MPAV 226 (377)
Q Consensus 155 ~~~~~~--~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l~~~~~~--~~v~ 226 (377)
.+.... ...+..+.. .++.++++|+|++.+.||++.+++|++.+ ++++++|+|+|++.+.+++++.. .+|.
T Consensus 178 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~ 256 (394)
T 3okp_A 178 TPATPEDKSATRKKLGF-TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLIVGSGRYESTLRRLATDVSQNVK 256 (394)
T ss_dssp CCCCHHHHHHHHHHTTC-CTTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEE
T ss_pred CCCCchhhHHHHHhcCC-CcCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEE
Confidence 763222 223333332 44568999999999999999999999877 78999999999999998887743 4799
Q ss_pred EccccCchhHHHHHhcCCEEEeccCC-------cccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHH
Q 017114 227 FTGMLLGEELSQAYASGDVFVMPSES-------ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLD 299 (377)
Q Consensus 227 ~~g~~~~~~~~~~~~~adi~v~ps~~-------e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 299 (377)
+.|+++++++..+|+.||++|+||.. |++|++++|||++|+|||+++.++..+++ .++ +|++++++|++
T Consensus 257 ~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i---~~~-~g~~~~~~d~~ 332 (394)
T 3okp_A 257 FLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGVPVIAGTSGGAPETV---TPA-TGLVVEGSDVD 332 (394)
T ss_dssp EEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHTTCCEEECSSTTGGGGC---CTT-TEEECCTTCHH
T ss_pred EcCCCCHHHHHHHHHhCCEEEecCccccccccccccCcHHHHHHHcCCCEEEeCCCChHHHH---hcC-CceEeCCCCHH
Confidence 99999999999999999999999998 99999999999999999999999999999 778 99999999999
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHh
Q 017114 300 DCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTIRNEQYNAAIWFWRK 352 (377)
Q Consensus 300 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~ly~~~~~~~~~ 352 (377)
+++++|.++++|++.++++++++++.++ +|+|+.+++++. .+|+++.....+
T Consensus 333 ~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~r~~~~ 385 (394)
T 3okp_A 333 KLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWEIMGERLT-NILQSEPRKLAA 385 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH-HHHHSCCC----
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHhccCcch
Confidence 9999999999999999999999999985 699999999999 699887654443
No 3
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=2.2e-43 Score=321.11 Aligned_cols=343 Identities=23% Similarity=0.285 Sum_probs=258.5
Q ss_pred CCcEEEEEeeCCCCC-----ccccCceeecccCCCCCcccc--cc-ccccchHHHHHH-HHhc-CCCEEEeCCCchhHHH
Q 017114 1 MGDEVMVVTTHEGVP-----QEFYGAKLIGSRSFPCPWYQK--VP-LSLALSPRIISE-VARF-KPDIIHASSPGIMVFG 70 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~-i~~~-~pDii~~~~~~~~~~~ 70 (377)
+||+|+|+|...... ....+++++.+...+...... .. +...+...+.+. +++. +||+||+|.+. ..+.
T Consensus 58 ~G~~V~v~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~~~-~~~~ 136 (438)
T 3c48_A 58 QGIEVDIYTRATRPSQGEIVRVAENLRVINIAAGPYEGLSKEELPTQLAAFTGGMLSFTRREKVTYDLIHSHYWL-SGQV 136 (438)
T ss_dssp TTCEEEEEEECCCGGGCSEEEEETTEEEEEECCSCSSSCCGGGGGGGHHHHHHHHHHHHHHHTCCCSEEEEEHHH-HHHH
T ss_pred cCCEEEEEecCCCCCCcccccccCCeEEEEecCCCccccchhHHHHHHHHHHHHHHHHHHhccCCCCEEEeCCcc-HHHH
Confidence 599999999876421 112455555554332211111 10 111122234444 5444 49999998743 3344
Q ss_pred HHHHHHhhCCCEEEEeccCCccccccccc--ccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCC
Q 017114 71 ALIIAKLLCVPIVMSYHTHVPVYIPRYTF--SWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKG 148 (377)
Q Consensus 71 ~~~~~~~~~~~~i~~~h~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~g 148 (377)
+..+++..++|+|++.|+........... .........+++.+++.+|.++++|+..++.+.+.++.+..++.++|||
T Consensus 137 ~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~g~~~~k~~vi~ng 216 (438)
T 3c48_A 137 GWLLRDLWRIPLIHTAHTLAAVKNSYRDDSDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPG 216 (438)
T ss_dssp HHHHHHHHTCCEEEECSSCHHHHSCC----CCHHHHHHHHHHHHHHHHCSEEEESSHHHHHHHHHHHCCCGGGEEECCCC
T ss_pred HHHHHHHcCCCEEEEecCCcccccccccccCCcchHHHHHHHHHHHhcCCEEEEcCHHHHHHHHHHhCCChhheEEecCC
Confidence 45567778999999999975432111100 0111223456788899999999999999999988666667899999999
Q ss_pred CCCCCCCCccCch--HHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC----C--CceEEEEec----CccHHHH
Q 017114 149 VDSESFHPRFRSS--EMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----P--EARIAFIGD----GPYREEL 216 (377)
Q Consensus 149 v~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~--~~~l~i~G~----g~~~~~l 216 (377)
+|.+.+.+..... ..+.++.. .+++++++|+|++.+.||++.+++|++.+ | +++|+|+|+ |+..+.+
T Consensus 217 vd~~~~~~~~~~~~~~~r~~~~~-~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l 295 (438)
T 3c48_A 217 ADVELYSPGNDRATERSRRELGI-PLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTY 295 (438)
T ss_dssp CCTTTSCCC----CHHHHHHTTC-CSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHH
T ss_pred ccccccCCcccchhhhhHHhcCC-CCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHH
Confidence 9998886653221 23444432 35678999999999999999999999876 3 789999998 7777777
Q ss_pred HHhhcC----CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEE
Q 017114 217 EKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYL 292 (377)
Q Consensus 217 ~~~~~~----~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~ 292 (377)
++++.+ .+|.+.|+++++++..+|+.||++|+||..|++|++++|||+||+|||+++.++..+++ .++.+|++
T Consensus 296 ~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i---~~~~~g~~ 372 (438)
T 3c48_A 296 RHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAV---AEGETGLL 372 (438)
T ss_dssp HHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHHHHS---CBTTTEEE
T ss_pred HHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEecCCCChhHHh---hCCCcEEE
Confidence 776653 47999999999999999999999999999999999999999999999999999999999 88889999
Q ss_pred eCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Q 017114 293 FNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWF 349 (377)
Q Consensus 293 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~~~ 349 (377)
+++.|+++++++|.++++|++.++++++++++.+++|+|+.+++++. .+|+++++.
T Consensus 373 ~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~ 428 (438)
T 3c48_A 373 VDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLS-SLYNDAIAN 428 (438)
T ss_dssp ESSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHhhh
Confidence 99999999999999999999999999999999997799999999999 799999864
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=6.8e-44 Score=324.60 Aligned_cols=296 Identities=22% Similarity=0.284 Sum_probs=241.0
Q ss_pred HHHHHHHHh-----cCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCccccccccc---ccc---hhhHHHHHHHH
Q 017114 45 PRIISEVAR-----FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTF---SWL---VKPMWLVIKFL 113 (377)
Q Consensus 45 ~~~~~~i~~-----~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~---~~~---~~~~~~~~~~~ 113 (377)
..+.+.++. .+||+||+|++.. .+.+..+++..++|+|++.|+........... ... ......+++..
T Consensus 107 ~~~~~~~~~~~~~~~~~Dii~~~~~~~-~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (439)
T 3fro_A 107 RASVLLLNDLLREEPLPDVVHFHDWHT-VFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDPEHTG 185 (439)
T ss_dssp HHHHHHHHHHTTTSCCCSEEEEESGGG-HHHHHHHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGGGCCSSEECHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEEEecchhh-hhhHHHHhhccCCCEEEEecccccccCchHHhCccccccccccceeeHhhhh
Confidence 344455554 4999999998644 34445566889999999999987543221110 000 11112567889
Q ss_pred HhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCcc-------CchHHHHHhhCCCCCCCeEEEeeccc-c
Q 017114 114 HRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRF-------RSSEMRWRLSNGEPDKPLIVHVGRLG-V 185 (377)
Q Consensus 114 ~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~G~~~-~ 185 (377)
++.+|.++++|+..++.....+..+..++.++|||+|.+.|.+.. .....+.++.. +++++++|+|++. +
T Consensus 186 ~~~ad~ii~~S~~~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~G~~~~~ 263 (439)
T 3fro_A 186 GYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGM--DEGVTFMFIGRFDRG 263 (439)
T ss_dssp HHHCSEEEESCHHHHHHTHHHHGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHHTC--CSCEEEEEECCSSCT
T ss_pred hhhccEEEecCHHHHHHHhhhhhhcCCceeecCCCCCchhcCcccccchhhhhHHHHHHHcCC--CCCcEEEEEcccccc
Confidence 999999999999998886655545678999999999999887752 12233444433 3339999999999 9
Q ss_pred cccHHHHHHHHHhC------CCceEEEEecCccH--HHHHHhhcCC--CEEEccccCchhHHHHHhcCCEEEeccCCccc
Q 017114 186 EKSLDFLKRVMDRL------PEARIAFIGDGPYR--EELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETL 255 (377)
Q Consensus 186 ~k~~~~l~~a~~~l------~~~~l~i~G~g~~~--~~l~~~~~~~--~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~ 255 (377)
.||++.+++|++.+ ++++|+|+|+|+.. +.+++++.+. .+.+.|+++.+++..+|+.||++|+||..|++
T Consensus 264 ~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~ 343 (439)
T 3fro_A 264 QKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPF 343 (439)
T ss_dssp TBCHHHHHHHHHHHHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECBSCCSS
T ss_pred cccHHHHHHHHHHHHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCc
Confidence 99999999999987 68999999999866 7777776543 47789999999999999999999999999999
Q ss_pred chHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCHHHH
Q 017114 256 GLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEKYDWRAA 334 (377)
Q Consensus 256 ~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~ 334 (377)
|++++|||+||+|||+++.++..+++ .++ +|++++++|+++++++|.++++ |++.++++++++++.+++|+|+.+
T Consensus 344 ~~~~~EAma~G~Pvi~s~~~~~~e~~---~~~-~g~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~ 419 (439)
T 3fro_A 344 GLVALEAMCLGAIPIASAVGGLRDII---TNE-TGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWEKS 419 (439)
T ss_dssp CHHHHHHHHTTCEEEEESSTHHHHHC---CTT-TCEEECTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSCHHHH
T ss_pred cHHHHHHHHCCCCeEEcCCCCcceeE---EcC-ceEEeCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCcHHHH
Confidence 99999999999999999999999999 666 9999999999999999999999 999999999999999988999999
Q ss_pred HHHHHHHHHHHHHH
Q 017114 335 TRTIRNEQYNAAIW 348 (377)
Q Consensus 335 ~~~~~~~ly~~~~~ 348 (377)
++++. .+|+++++
T Consensus 420 ~~~~~-~~~~~~~~ 432 (439)
T 3fro_A 420 AERYV-KAYTGSID 432 (439)
T ss_dssp HHHHH-HHHHTCSC
T ss_pred HHHHH-HHHHHHHH
Confidence 99999 69988764
No 5
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=5.8e-43 Score=323.29 Aligned_cols=346 Identities=18% Similarity=0.211 Sum_probs=262.8
Q ss_pred CCcEEEEEeeCCCCCc---------c---ccCceeecccCCCCCcccccc-c--cccchHHHHHHHHh--cCCCEEEeCC
Q 017114 1 MGDEVMVVTTHEGVPQ---------E---FYGAKLIGSRSFPCPWYQKVP-L--SLALSPRIISEVAR--FKPDIIHASS 63 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~---------~---~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~i~~--~~pDii~~~~ 63 (377)
+||+|+|+|....... . ..++++++++..+........ + ...+...+.+.+++ .+||+||+|.
T Consensus 49 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~Divh~~~ 128 (499)
T 2r60_A 49 MGVQVDIITRRIKDENWPEFSGEIDYYQETNKVRIVRIPFGGDKFLPKEELWPYLHEYVNKIINFYREEGKFPQVVTTHY 128 (499)
T ss_dssp TTCEEEEEEECCCBTTBGGGCCSEEECTTCSSEEEEEECCSCSSCCCGGGCGGGHHHHHHHHHHHHHHHTCCCSEEEEEH
T ss_pred cCCeEEEEeCCCCcccccchhhhHHhccCCCCeEEEEecCCCcCCcCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 5999999998653211 1 245665555433222111110 1 11223567778877 5899999997
Q ss_pred CchhHHHHHHHHHhhCCCEEEEeccCCccccccccc-----ccch-----hhHHHHHHHHHhcCCeeEecChhHHHHHHH
Q 017114 64 PGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTF-----SWLV-----KPMWLVIKFLHRAADLTLVPSVAIGKDLEA 133 (377)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~ 133 (377)
+. ..+.+..+++..++|+|++.|+..+........ .... .....+++.+++.+|.++++|+..++.+.+
T Consensus 129 ~~-~~~~~~~~~~~~~~p~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~ 207 (499)
T 2r60_A 129 GD-GGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERLTMSYADKIIVSTSQERFGQYS 207 (499)
T ss_dssp HH-HHHHHHHHHHHHCCCEEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHHHHHHCSEEEESSHHHHHHTTT
T ss_pred Cc-chHHHHHHHHhcCCcEEEEccCcccccchhhccCCCCcchhhhhHHHHHHHHHHHHHHhcCCEEEECCHHHHHHHHh
Confidence 43 334455577888999999999975432211100 0000 022345688899999999999999999887
Q ss_pred h--cc-c----CCCcEEEecCCCCCCCCCCccCc---hHHHHHhh-----CCCCCCCeEEEeecccccccHHHHHHHHHh
Q 017114 134 A--RV-T----AANKIRIWKKGVDSESFHPRFRS---SEMRWRLS-----NGEPDKPLIVHVGRLGVEKSLDFLKRVMDR 198 (377)
Q Consensus 134 ~--~~-~----~~~~i~~i~~gv~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~ 198 (377)
. ++ . +..++.+||||+|.+.+.+.... ...+.++. . .++.++|+|+|++.+.||++.+++|++.
T Consensus 208 ~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 286 (499)
T 2r60_A 208 HDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSE-RMELPAIIASSRLDQKKNHYGLVEAYVQ 286 (499)
T ss_dssp SGGGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHHHHHHHHHHHHSCGG-GTTSCEEEECSCCCGGGCHHHHHHHHHT
T ss_pred hhcccccccccCCCCeEEECCCcChhhcCccchhhhHHHHHHHhccccccc-CCCCcEEEEeecCccccCHHHHHHHHHH
Confidence 6 54 4 56799999999999888765331 33444433 2 3467899999999999999999999998
Q ss_pred CC-----CceEEEEec--Cc------c-------HHHHHHhhcC----CCEEEccccCchhHHHHHhcC----CEEEecc
Q 017114 199 LP-----EARIAFIGD--GP------Y-------REELEKMFTG----MPAVFTGMLLGEELSQAYASG----DVFVMPS 250 (377)
Q Consensus 199 l~-----~~~l~i~G~--g~------~-------~~~l~~~~~~----~~v~~~g~~~~~~~~~~~~~a----di~v~ps 250 (377)
+. .++++|+|+ |+ . .+.+++++.+ .+|.|+|+++++++..+|+.| |++|+||
T Consensus 287 l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS 366 (499)
T 2r60_A 287 NKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTS 366 (499)
T ss_dssp CHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECc
Confidence 83 258999997 33 1 5677776653 369999999999999999999 9999999
Q ss_pred CCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-hc
Q 017114 251 ESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KY 329 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~ 329 (377)
..|+||++++|||+||+|||+++.++..|++ .++.+|+++++.|+++++++|.++++|++.++++++++++.++ +|
T Consensus 367 ~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v---~~~~~g~l~~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~f 443 (499)
T 2r60_A 367 FYEPFGLAPVEAMASGLPAVVTRNGGPAEIL---DGGKYGVLVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERY 443 (499)
T ss_dssp SCBCCCSHHHHHHHTTCCEEEESSBHHHHHT---GGGTSSEEECTTCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCCCcHHHHHHHcCCCEEEecCCCHHHHh---cCCceEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999 7788999999999999999999999999999999999999986 59
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHh
Q 017114 330 DWRAATRTIRNEQYNAAIWFWRK 352 (377)
Q Consensus 330 s~~~~~~~~~~~ly~~~~~~~~~ 352 (377)
+|+.+++++. .+|+++++..+.
T Consensus 444 s~~~~~~~~~-~~y~~~~~~~~~ 465 (499)
T 2r60_A 444 TWQETARGYL-EVIQEIADRKDE 465 (499)
T ss_dssp BHHHHHHHHH-HHHHHHHHC---
T ss_pred CHHHHHHHHH-HHHHHHHhhhhh
Confidence 9999999999 699999876554
No 6
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=1.1e-42 Score=313.55 Aligned_cols=327 Identities=21% Similarity=0.294 Sum_probs=254.1
Q ss_pred CCcEEEEEeeCCCCCccccCceeecccCCCCCcc---ccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHh
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWY---QKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKL 77 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~ 77 (377)
+||+|++++....... ...........+..+.. .+..+.......+.+.+++.+||+||+++.....+ ...+++.
T Consensus 51 ~G~~V~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~-~~~~~~~ 128 (406)
T 2gek_A 51 AGHEVSVLAPASPHVK-LPDYVVSGGKAVPIPYNGSVARLRFGPATHRKVKKWIAEGDFDVLHIHEPNAPSL-SMLALQA 128 (406)
T ss_dssp TTCEEEEEESCCTTSC-CCTTEEECCCCC------------CCHHHHHHHHHHHHHHCCSEEEEECCCSSSH-HHHHHHH
T ss_pred CCCeEEEEecCCcccc-CCcccccCCcEEeccccCCcccccccHHHHHHHHHHHHhcCCCEEEECCccchHH-HHHHHHh
Confidence 5999999998765331 11111111122222211 11222233446788899999999999998755544 4446677
Q ss_pred hCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCc
Q 017114 78 LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPR 157 (377)
Q Consensus 78 ~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~ 157 (377)
.++|+|+++|+..+... .........+.+++.+|.++++|+..++.+.+.++ ..++ ++|||+|.+.+.+.
T Consensus 129 ~~~~~i~~~h~~~~~~~-------~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~--~~~~-vi~~~v~~~~~~~~ 198 (406)
T 2gek_A 129 AEGPIVATFHTSTTKSL-------TLSVFQGILRPYHEKIIGRIAVSDLARRWQMEALG--SDAV-EIPNGVDVASFADA 198 (406)
T ss_dssp EESSEEEEECCCCCSHH-------HHHHHHSTTHHHHTTCSEEEESSHHHHHHHHHHHS--SCEE-ECCCCBCHHHHHTC
T ss_pred cCCCEEEEEcCcchhhh-------hHHHHHHHHHHHHhhCCEEEECCHHHHHHHHHhcC--CCcE-EecCCCChhhcCCC
Confidence 79999999999654321 11111122237789999999999999999987653 4678 99999998766543
Q ss_pred cCchHHHHHhhCCCCCCCeEEEeecc-cccccHHHHHHHHHhC----CCceEEEEecCccHHHHHHhhcC--CCEEEccc
Q 017114 158 FRSSEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTG--MPAVFTGM 230 (377)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~i~~~G~~-~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l~~~~~~--~~v~~~g~ 230 (377)
..... ...++++++|+|++ .+.||++.+++++..+ ++++++|+|+|+. +.+++++.+ .+|.+.|+
T Consensus 199 ~~~~~-------~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l~i~G~~~~-~~l~~~~~~~~~~v~~~g~ 270 (406)
T 2gek_A 199 PLLDG-------YPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEILIVGRGDE-DELREQAGDLAGHLRFLGQ 270 (406)
T ss_dssp CCCTT-------CSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEEEEESCSCH-HHHHHHTGGGGGGEEECCS
T ss_pred chhhh-------ccCCCeEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEEEEEcCCcH-HHHHHHHHhccCcEEEEec
Confidence 22110 12255799999999 9999999999999887 7899999999988 888877664 47999999
Q ss_pred cCchhHHHHHhcCCEEEeccC-CcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 231 LLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 231 ~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
++++++..+|+.||++|+||. .|++|++++|||+||+|||+++.++..+++ .++.+|++++++|+++++++|.+++
T Consensus 271 ~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~i---~~~~~g~~~~~~d~~~l~~~i~~l~ 347 (406)
T 2gek_A 271 VDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVL---ADGDAGRLVPVDDADGMAAALIGIL 347 (406)
T ss_dssp CCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEECCCHHHHHHH---TTTTSSEECCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEEecCCcHHHHh---cCCCceEEeCCCCHHHHHHHHHHHH
Confidence 999999999999999999996 999999999999999999999999999999 8889999999999999999999999
Q ss_pred hCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Q 017114 310 YNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWR 351 (377)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~~~~~ 351 (377)
+|++.+.++++++++.+++|+|+.+++++. .+|+++++...
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~ 388 (406)
T 2gek_A 348 EDDQLRAGYVARASERVHRYDWSVVSAQIM-RVYETVSGAGI 388 (406)
T ss_dssp HCHHHHHHHHHHHHHHGGGGBHHHHHHHHH-HHHHHHCCTTC
T ss_pred cCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhhcc
Confidence 999999999999999988999999999999 69999875443
No 7
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=7.2e-43 Score=321.69 Aligned_cols=292 Identities=18% Similarity=0.212 Sum_probs=229.4
Q ss_pred HhcCCCEEEeCCCchhHHHHHHHHHh--hCCCEEEEeccCCcccc-ccc-------ccccc------hhhHHHHHHHHHh
Q 017114 52 ARFKPDIIHASSPGIMVFGALIIAKL--LCVPIVMSYHTHVPVYI-PRY-------TFSWL------VKPMWLVIKFLHR 115 (377)
Q Consensus 52 ~~~~pDii~~~~~~~~~~~~~~~~~~--~~~~~i~~~h~~~~~~~-~~~-------~~~~~------~~~~~~~~~~~~~ 115 (377)
++.+||+||+|++... +.+.++++. .++|+|++.|+.+.... ... ..... ......+++.+++
T Consensus 127 ~~~~~DiIh~~~~~~~-~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (485)
T 1rzu_A 127 PGWRPDMVHAHDWQAA-MTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQ 205 (485)
T ss_dssp SSCCCSEEEEEHHHHT-THHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHH
T ss_pred cCCCCCEEEecccchh-HHHHHHhhcccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHh
Confidence 3679999999984332 233444544 79999999999754311 100 00000 0001136678889
Q ss_pred cCCeeEecChhHHHHHHHh-cc--------cCCCcEEEecCCCCCCCCCCccC------------------chHHHHHhh
Q 017114 116 AADLTLVPSVAIGKDLEAA-RV--------TAANKIRIWKKGVDSESFHPRFR------------------SSEMRWRLS 168 (377)
Q Consensus 116 ~~d~ii~~s~~~~~~~~~~-~~--------~~~~~i~~i~~gv~~~~~~~~~~------------------~~~~~~~~~ 168 (377)
.+|.++++|+..++.+.+. ++ .+..++.+||||+|.+.|.+... ....+.++.
T Consensus 206 ~ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 285 (485)
T 1rzu_A 206 TATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFR 285 (485)
T ss_dssp HCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHT
T ss_pred hcCEEEecCHhHHHHHhccccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcC
Confidence 9999999999999988764 22 24679999999999988876543 234455554
Q ss_pred CCCCCCCeEEEeecccccccHHHHHHHHHhC--CCceEEEEecCc--cHHHHHHhhcC--CCEE-EccccCchhHHHHHh
Q 017114 169 NGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTG--MPAV-FTGMLLGEELSQAYA 241 (377)
Q Consensus 169 ~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l--~~~~l~i~G~g~--~~~~l~~~~~~--~~v~-~~g~~~~~~~~~~~~ 241 (377)
...++.++++|+|++.+.||++.+++|++.+ ++++|+|+|+|+ +.+.+++++.+ .+|. +.|+ +.+++..+|+
T Consensus 286 ~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~-~~~~~~~~~~ 364 (485)
T 1rzu_A 286 IDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGY-NEPLSHLMQA 364 (485)
T ss_dssp CCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESC-CHHHHHHHHH
T ss_pred CCCCCCeEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCC-CHHHHHHHHh
Confidence 4333367999999999999999999999887 689999999886 46777776654 4687 7888 6777799999
Q ss_pred cCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCC---------CeeEEeCCCCHHHHHHHHHHHh---
Q 017114 242 SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG---------KIGYLFNPGDLDDCLSKLEPLL--- 309 (377)
Q Consensus 242 ~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~~l~~~i~~~~--- 309 (377)
.||++|+||..|+||++++|||+||+|||+++.++.+|++ .++ .+|+++++.|+++++++|.+++
T Consensus 365 ~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v---~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~ 441 (485)
T 1rzu_A 365 GCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTV---IDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYY 441 (485)
T ss_dssp HCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHC---CBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHH
T ss_pred cCCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhhee---cccccccccccCCcceEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 777 8999999999999999999999
Q ss_pred hCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Q 017114 310 YNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWR 351 (377)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~~~~~ 351 (377)
+|++.++++++++++ ++|+|+.+++++. .+|+++++...
T Consensus 442 ~~~~~~~~~~~~~~~--~~fs~~~~~~~~~-~~y~~~~~~~~ 480 (485)
T 1rzu_A 442 HDPKLWTQMQKLGMK--SDVSWEKSAGLYA-ALYSQLISKGH 480 (485)
T ss_dssp TCHHHHHHHHHHHHT--CCCBHHHHHHHHH-HHHHHHTC---
T ss_pred CCHHHHHHHHHHHHH--HhCChHHHHHHHH-HHHHHhhCCCC
Confidence 799999999998864 6899999999999 79999876544
No 8
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=2.6e-41 Score=320.18 Aligned_cols=343 Identities=18% Similarity=0.236 Sum_probs=250.3
Q ss_pred CCcEEE----EEeeCCCCC---------c---cccCceeecccCCCCC-----ccccc---cccccch-HHHHHHHHh--
Q 017114 1 MGDEVM----VVTTHEGVP---------Q---EFYGAKLIGSRSFPCP-----WYQKV---PLSLALS-PRIISEVAR-- 53 (377)
Q Consensus 1 ~G~~V~----v~~~~~~~~---------~---~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~-~~~~~~i~~-- 53 (377)
+||+|+ |+|...... + ...++++++++..+.. +..+. ++...+. ..+..+++.
T Consensus 326 ~G~~V~~~V~v~Tr~~~~~~g~~y~~~~e~i~~~~gv~I~RvP~~~~~g~l~~~l~k~~L~~~L~~F~~~~l~~il~~~~ 405 (816)
T 3s28_A 326 QGLNIKPRILILTRLLPDAVGTTCGERLERVYDSEYCDILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAVELSKELN 405 (816)
T ss_dssp TTCCCCCEEEEEEECCTTCTTSSTTSSEEECTTCSSEEEEEECEEETTEEECSCCCTTTCGGGHHHHHHHHHHHHHHHCS
T ss_pred CCCccceeeEEEeCCCCCCCCCccCCcceeecCcCCeEEEEecCCCccccccccccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 589886 898764321 1 1236677776654421 11111 1111222 223334443
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCccccccccccc--ch---hh--HHHHHHHHHhcCCeeEecChh
Q 017114 54 FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSW--LV---KP--MWLVIKFLHRAADLTLVPSVA 126 (377)
Q Consensus 54 ~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~--~~---~~--~~~~~~~~~~~~d~ii~~s~~ 126 (377)
.+|||||+|.+. .++.+.++++..|+|+|++.|+............+ .. .. ....++..++.||.|+++|+.
T Consensus 406 ~~PDVIHsH~~~-sglva~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~ 484 (816)
T 3s28_A 406 GKPDLIIGNYSD-GNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQ 484 (816)
T ss_dssp SCCSEEEEEHHH-HHHHHHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHH
T ss_pred CCCeEEEeCCch-HHHHHHHHHHHcCCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECCHH
Confidence 379999998643 34556778889999999999986543222111110 00 01 112366789999999999999
Q ss_pred HHHHHHHh---cc------------------cCCCcEEEecCCCCCCCCCCccCchH------------------HHHHh
Q 017114 127 IGKDLEAA---RV------------------TAANKIRIWKKGVDSESFHPRFRSSE------------------MRWRL 167 (377)
Q Consensus 127 ~~~~~~~~---~~------------------~~~~~i~~i~~gv~~~~~~~~~~~~~------------------~~~~~ 167 (377)
..+.+.+. +. ....++.+||||+|.+.|.+...... .+..+
T Consensus 485 ~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~l 564 (816)
T 3s28_A 485 EIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHL 564 (816)
T ss_dssp HHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEE
T ss_pred HHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHHHh
Confidence 88752221 11 11238999999999999877643221 00111
Q ss_pred h-CCCCCCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEecCc-----------cHHHHHHhhcC----CCEEE
Q 017114 168 S-NGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGP-----------YREELEKMFTG----MPAVF 227 (377)
Q Consensus 168 ~-~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~-----------~~~~l~~~~~~----~~v~~ 227 (377)
+ ...+++++|+|+|++.+.||++.+++|++.+ ++++|+|+|+|+ ..+.+++++++ .+|.|
T Consensus 565 g~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~f 644 (816)
T 3s28_A 565 CVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRW 644 (816)
T ss_dssp SCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEE
T ss_pred cccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEE
Confidence 1 1245778999999999999999999999988 469999999988 55666666553 36999
Q ss_pred cccc----CchhHHHHHh-cCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHH
Q 017114 228 TGML----LGEELSQAYA-SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCL 302 (377)
Q Consensus 228 ~g~~----~~~~~~~~~~-~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 302 (377)
.|++ +.+++..+|+ .+|++|+||..|+||++++||||||+|||+|+.++..+++ .++.+|+++++.|+++++
T Consensus 645 lG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV---~dg~~Gllv~p~D~e~LA 721 (816)
T 3s28_A 645 ISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEII---VHGKSGFHIDPYHGDQAA 721 (816)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHC---CBTTTBEEECTTSHHHHH
T ss_pred ccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHH---ccCCcEEEeCCCCHHHHH
Confidence 9954 4588999998 5799999999999999999999999999999999999999 889999999999999999
Q ss_pred HHHHHHh----hCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHH
Q 017114 303 SKLEPLL----YNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIW 348 (377)
Q Consensus 303 ~~i~~~~----~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~~~~ 348 (377)
++|.+++ .|++.++++++++++.+ ++|+|+.+++++. .+|+..-.
T Consensus 722 ~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll-~lY~~~g~ 771 (816)
T 3s28_A 722 DTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLL-TLTGVYGF 771 (816)
T ss_dssp HHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHhH
Confidence 9997776 89999999999999999 6899999999999 69988743
No 9
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=1.4e-41 Score=313.16 Aligned_cols=299 Identities=18% Similarity=0.219 Sum_probs=232.0
Q ss_pred HHHHHHHHh----cCCCEEEeCCCchhHHHHHHHH-HhhCCCEEEEeccCCcccc-ccc-------ccccc------hhh
Q 017114 45 PRIISEVAR----FKPDIIHASSPGIMVFGALIIA-KLLCVPIVMSYHTHVPVYI-PRY-------TFSWL------VKP 105 (377)
Q Consensus 45 ~~~~~~i~~----~~pDii~~~~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~~-~~~-------~~~~~------~~~ 105 (377)
..+.+.++. .+||+||+|++....+ +.+++ +..++|+|++.|+...... ... ..... ...
T Consensus 115 ~~~~~~~~~~~~~~~~Divh~~~~~~~~~-~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (485)
T 2qzs_A 115 WVGAEMASGLDPFWRPDVVHAHDWHAGLA-PAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNG 193 (485)
T ss_dssp HHHHHHTTTSSTTCCCSEEEEETGGGTTH-HHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETT
T ss_pred HHHHHHHHHhccCCCCCEEEeeccchhHH-HHHHhhccCCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccc
Confidence 345555653 7999999998654333 33344 6789999999999753211 000 00000 000
Q ss_pred HHHHHHHHHhcCCeeEecChhHHHHHHHh-ccc--------CC--CcEEEecCCCCCCCCCCccC---------------
Q 017114 106 MWLVIKFLHRAADLTLVPSVAIGKDLEAA-RVT--------AA--NKIRIWKKGVDSESFHPRFR--------------- 159 (377)
Q Consensus 106 ~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-~~~--------~~--~~i~~i~~gv~~~~~~~~~~--------------- 159 (377)
...+++..++.+|.++++|+..++.+.+. ++. +. .++.+||||+|.+.|.+...
T Consensus 194 ~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~ 273 (485)
T 2qzs_A 194 QISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDK 273 (485)
T ss_dssp EEEHHHHHHHHCSEEEESSHHHHHHTTSHHHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGG
T ss_pred cccHHHHHHHhcCeEEecCHHHHHHHhccccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHH
Confidence 12466788899999999999999988764 221 12 68999999999988876532
Q ss_pred ---chHHHHHhhCCC-CCCCeEEEeecccccccHHHHHHHHHhC--CCceEEEEecCc--cHHHHHHhhcC--CCEE-Ec
Q 017114 160 ---SSEMRWRLSNGE-PDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTG--MPAV-FT 228 (377)
Q Consensus 160 ---~~~~~~~~~~~~-~~~~~i~~~G~~~~~k~~~~l~~a~~~l--~~~~l~i~G~g~--~~~~l~~~~~~--~~v~-~~ 228 (377)
....+.++.... .+.++++|+|++.+.||++.+++|++.+ ++++|+|+|+|+ +.+.+++++.+ .+|. +.
T Consensus 274 ~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~ 353 (485)
T 2qzs_A 274 AENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQI 353 (485)
T ss_dssp HHHHHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEE
T ss_pred HHhHHHHHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeC
Confidence 133444444322 2678999999999999999999999988 689999999885 56777776654 4686 78
Q ss_pred cccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCC---------CeeEEeCCCCHH
Q 017114 229 GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG---------KIGYLFNPGDLD 299 (377)
Q Consensus 229 g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~ 299 (377)
|+ +.+++..+|+.||++|+||..|+||++++|||+||+|||+++.++.+|++ .++ .+|++++++|++
T Consensus 354 g~-~~~~~~~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v---~~~~~~~~~~~~~~G~l~~~~d~~ 429 (485)
T 2qzs_A 354 GY-HEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTV---SDCSLENLADGVASGFVFEDSNAW 429 (485)
T ss_dssp SC-CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHC---CBCCHHHHHTTCCCBEEECSSSHH
T ss_pred CC-CHHHHHHHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCCCCcccee---ccCccccccccccceEEECCCCHH
Confidence 88 67778999999999999999999999999999999999999999999999 777 899999999999
Q ss_pred HHHHHHHHHh---hCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Q 017114 300 DCLSKLEPLL---YNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWR 351 (377)
Q Consensus 300 ~l~~~i~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~~~~~ 351 (377)
+++++|.+++ +|++.++++++++++ ++|+|+.+++++. .+|++++....
T Consensus 430 ~la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~-~ly~~~~~~~~ 481 (485)
T 2qzs_A 430 SLLRAIRRAFVLWSRPSLWRFVQRQAMA--MDFSWQVAAKSYR-ELYYRLKLEHH 481 (485)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHHH--CCCCHHHHHHHHH-HHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcCCHHHHHHHHH-HHHHHhhhhhc
Confidence 9999999999 799999999988864 6899999999999 69998865443
No 10
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=1.3e-40 Score=300.43 Aligned_cols=282 Identities=17% Similarity=0.215 Sum_probs=225.0
Q ss_pred chHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCC----EEEEeccCCcccccccccccchhhHHHHHHHHHhcCC
Q 017114 43 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVP----IVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 118 (377)
Q Consensus 43 ~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~----~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 118 (377)
....+.+.+++.+||+||++.+. .+.+..+++..++| ++...|...+... . ..+++++.+|
T Consensus 69 ~~~~l~~~l~~~~~Div~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~----~~~~~~~~~~ 133 (413)
T 3oy2_A 69 YYSGLSEFIDVHKPDIVMIYNDP--IVIGNYLLAMGKCSHRTKIVLYVDLVSKNIR---------E----NLWWIFSHPK 133 (413)
T ss_dssp CHHHHHHHHHHHCCSEEEEEECH--HHHHHHHHHGGGCCSCCEEEEEECCCSBSCC---------G----GGGGGGGCTT
T ss_pred hHHHHHHHHHhcCCCEEEEcchH--HHHHHHHHHhccCCCCCceeeeccccchhhH---------H----HHHHHHhccC
Confidence 34567888899999999999543 23334455555555 3444444322111 0 0256778888
Q ss_pred --eeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCC--CCCeEEEeecccccccHHHHHH
Q 017114 119 --LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEP--DKPLIVHVGRLGVEKSLDFLKR 194 (377)
Q Consensus 119 --~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~G~~~~~k~~~~l~~ 194 (377)
.++++|+..++.+.+.+. ..++.++|||+|.+.+. ..+.++.. ++ +.++++++|++.+.||++.+++
T Consensus 134 ~~~ii~~S~~~~~~~~~~~~--~~~~~vi~ngvd~~~~~------~~~~~~~~-~~~~~~~~il~vGr~~~~Kg~~~li~ 204 (413)
T 3oy2_A 134 VVGVMAMSKCWISDICNYGC--KVPINIVSHFVDTKTIY------DARKLVGL-SEYNDDVLFLNMNRNTARKRLDIYVL 204 (413)
T ss_dssp EEEEEESSTHHHHHHHHTTC--CSCEEECCCCCCCCCCT------THHHHTTC-GGGTTSEEEECCSCSSGGGTHHHHHH
T ss_pred CceEEEcCHHHHHHHHHcCC--CCceEEeCCCCCHHHHH------HHHHhcCC-CcccCceEEEEcCCCchhcCcHHHHH
Confidence 999999999999999543 57999999999998772 22223322 22 5789999999999999999999
Q ss_pred HHHhC----CCceEEEEecCccH------HHHHHhhcCC----C-------EEEccccCchhHHHHHhcCCEEEeccCCc
Q 017114 195 VMDRL----PEARIAFIGDGPYR------EELEKMFTGM----P-------AVFTGMLLGEELSQAYASGDVFVMPSESE 253 (377)
Q Consensus 195 a~~~l----~~~~l~i~G~g~~~------~~l~~~~~~~----~-------v~~~g~~~~~~~~~~~~~adi~v~ps~~e 253 (377)
|++.+ ++++|+|+|+|+.. +.+++++.+. + +.+.|+++++++..+|+.||++|+||..|
T Consensus 205 a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~E 284 (413)
T 3oy2_A 205 AAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGE 284 (413)
T ss_dssp HHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCC
T ss_pred HHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCCcC
Confidence 99887 89999999988654 6666654432 2 78889999999999999999999999999
Q ss_pred ccchHHHHHHhcCCCeEEecCCCCCccccccCCCCe---------------eE--EeCCCCHHHHHHHHHHHhhCHHHHH
Q 017114 254 TLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKI---------------GY--LFNPGDLDDCLSKLEPLLYNQELRE 316 (377)
Q Consensus 254 ~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~---------------g~--~~~~~~~~~l~~~i~~~~~~~~~~~ 316 (377)
+||++++|||+||+|||+++.++.+|++ .++.+ |+ ++++.|+++++++| ++++|++.++
T Consensus 285 ~~~~~~lEAma~G~PvI~s~~~g~~e~v---~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~~~~~~ 360 (413)
T 3oy2_A 285 GFGLCSAEGAVLGKPLIISAVGGADDYF---SGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKDEKNRK 360 (413)
T ss_dssp SSCHHHHHHHTTTCCEEEECCHHHHHHS---CTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTSHHHHH
T ss_pred CCCcHHHHHHHcCCCEEEcCCCChHHHH---ccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcCHHHHH
Confidence 9999999999999999999999999999 77666 88 99999999999999 9999999999
Q ss_pred HHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHhh
Q 017114 317 TMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWFWRKK 353 (377)
Q Consensus 317 ~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~~~~~~~~~ 353 (377)
++++++++.+ ++|+|+.+++++. .+|+++++....+
T Consensus 361 ~~~~~a~~~~~~~fs~~~~~~~~~-~~~~~~~~~~~~~ 397 (413)
T 3oy2_A 361 EYGKRVQDFVKTKPTWDDISSDII-DFFNSLLRVESRE 397 (413)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHH-HHHHHHTC-----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhhcCCC
Confidence 9999999998 5899999999999 7999998765544
No 11
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=2.8e-40 Score=290.76 Aligned_cols=277 Identities=18% Similarity=0.168 Sum_probs=230.1
Q ss_pred CCcEEEEEeeCCCCCccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCC
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCV 80 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~ 80 (377)
+||+|++++....... ..++.+.. .+ ....+.+.+++.+||+||++++....+ .++..++
T Consensus 46 ~G~~v~v~~~~~~~~~-~~~~~~~~-----~~----------~~~~l~~~l~~~~~Dvi~~~~~~~~~~----~~~~~~~ 105 (342)
T 2iuy_A 46 LGHEVFLLGAPGSPAG-RPGLTVVP-----AG----------EPEEIERWLRTADVDVVHDHSGGVIGP----AGLPPGT 105 (342)
T ss_dssp TTCEEEEESCTTSCCC-STTEEECS-----CC----------SHHHHHHHHHHCCCSEEEECSSSSSCS----TTCCTTC
T ss_pred cCCeEEEEecCCCCCC-CCcceecc-----CC----------cHHHHHHHHHhcCCCEEEECCchhhHH----HHhhcCC
Confidence 5999999998765322 22333221 11 123788899999999999998654322 2566789
Q ss_pred CEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCc
Q 017114 81 PIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRS 160 (377)
Q Consensus 81 ~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~ 160 (377)
| |++.|+..+... .+|.++++|+..++.+.+ ..++.++|||+|.+.+.+...
T Consensus 106 p-v~~~h~~~~~~~---------------------~~d~ii~~S~~~~~~~~~-----~~~~~vi~ngvd~~~~~~~~~- 157 (342)
T 2iuy_A 106 A-FISSHHFTTRPV---------------------NPVGCTYSSRAQRAHCGG-----GDDAPVIPIPVDPARYRSAAD- 157 (342)
T ss_dssp E-EEEEECSSSBCS---------------------CCTTEEESCHHHHHHTTC-----CTTSCBCCCCBCGGGSCCSTT-
T ss_pred C-EEEecCCCCCcc---------------------cceEEEEcCHHHHHHHhc-----CCceEEEcCCCChhhcCcccc-
Confidence 9 999999764311 199999999999988865 468899999999888766432
Q ss_pred hHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcC--CCEEEccccCchhHHH
Q 017114 161 SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTG--MPAVFTGMLLGEELSQ 238 (377)
Q Consensus 161 ~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~--~~v~~~g~~~~~~~~~ 238 (377)
...++.+++|+|++.+.||++.+++|++.+ +++|+|+|+|+..+.++++.+. .+|.|.|+++++++..
T Consensus 158 ---------~~~~~~~i~~vG~~~~~Kg~~~li~a~~~~-~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~ 227 (342)
T 2iuy_A 158 ---------QVAKEDFLLFMGRVSPHKGALEAAAFAHAC-GRRLVLAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLD 227 (342)
T ss_dssp ---------CCCCCSCEEEESCCCGGGTHHHHHHHHHHH-TCCEEEESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHH
T ss_pred ---------cCCCCCEEEEEeccccccCHHHHHHHHHhc-CcEEEEEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHH
Confidence 123567899999999999999999999998 9999999999888887776553 6899999999999999
Q ss_pred HHhcCCEEEeccC----------CcccchHHHHHHhcCCCeEEecCCCCCccccccCC--CCeeEEeCCCCHHHHHHHHH
Q 017114 239 AYASGDVFVMPSE----------SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD--GKIGYLFNPGDLDDCLSKLE 306 (377)
Q Consensus 239 ~~~~adi~v~ps~----------~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~l~~~i~ 306 (377)
+|+.||++|+||. .|++|++++|||+||+|||+++.++..|++ .+ +.+|+++++ |+++++++|.
T Consensus 228 ~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~~~~~e~~---~~~~~~~g~~~~~-d~~~l~~~i~ 303 (342)
T 2iuy_A 228 LLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGNGCLAEIV---PSVGEVVGYGTDF-APDEARRTLA 303 (342)
T ss_dssp HHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCTTTHHHHG---GGGEEECCSSSCC-CHHHHHHHHH
T ss_pred HHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEEcCCCChHHHh---cccCCCceEEcCC-CHHHHHHHHH
Confidence 9999999999999 899999999999999999999999999999 77 789999999 9999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHH
Q 017114 307 PLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIW 348 (377)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~ly~~~~~ 348 (377)
++++ ++++++.+ ++|+|+.+++++. .+|+++++
T Consensus 304 ~l~~--------~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~ 337 (342)
T 2iuy_A 304 GLPA--------SDEVRRAAVRLWGHVTIAERYV-EQYRRLLA 337 (342)
T ss_dssp TSCC--------HHHHHHHHHHHHBHHHHHHHHH-HHHHHHHT
T ss_pred HHHH--------HHHHHHHHHHhcCHHHHHHHHH-HHHHHHHc
Confidence 9987 56778877 6899999999999 69999875
No 12
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=5.3e-40 Score=292.70 Aligned_cols=328 Identities=15% Similarity=0.117 Sum_probs=241.1
Q ss_pred CCcEEEEEeeCCCCCccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCC
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCV 80 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~ 80 (377)
+||+|+|++...... ...++++..++. +..........+...+.+.+++.+||+||+++....... ...++..++
T Consensus 30 ~G~~V~v~~~~~~~~-~~~~~~v~~~~~---~~~~~~~~~~~~~~~l~~~i~~~~~Dvv~~~~~~~~~~~-~~~~~~~~~ 104 (374)
T 2iw1_A 30 RGHHVRVYTQSWEGD-CPKAFELIQVPV---KSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDV-YFAADVCYA 104 (374)
T ss_dssp TTCCEEEEESEECSC-CCTTCEEEECCC---CCSSHHHHHHHHHHHHHHHHHHSCCSEEEESSCCTTCSE-EECCSCCHH
T ss_pred CCCeEEEEecCCCCC-CCCCcEEEEEcc---CcccchhhHHHHHHHHHHHHhccCCCEEEEecCCCCcee-eeccccccc
Confidence 599999999864321 223555544432 222112222344567888899999999999874321100 000111112
Q ss_pred CEEEEeccCCcccccccccccchhhHHHHHHHHHh--cCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCcc
Q 017114 81 PIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHR--AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRF 158 (377)
Q Consensus 81 ~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~ 158 (377)
+.+.+.|+.... ..........+++..++ .+|.++++|+..++.+.+.++.+..++.++|||+|.+.+.+..
T Consensus 105 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~ 178 (374)
T 2iw1_A 105 EKVAQEKGFLYR------LTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQ 178 (374)
T ss_dssp HHHHHHCCHHHH------TSHHHHHHHHHHHHHHSTTCCCEEEESCHHHHHHHHHHHCCCGGGEEECCCCCCGGGSGGGS
T ss_pred eeeeecccchhh------hcHHHHHHHHHHHHHhhccCCcEEEEcCHHHHHHHHHHhCCChhheEEecCCcCHHhcCccc
Confidence 222222321110 00111223345555554 6999999999999999987766778999999999998876653
Q ss_pred Cc---hHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC-----CCceEEEEecCccHHHHHHhhc----CCCEE
Q 017114 159 RS---SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-----PEARIAFIGDGPYREELEKMFT----GMPAV 226 (377)
Q Consensus 159 ~~---~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l-----~~~~l~i~G~g~~~~~l~~~~~----~~~v~ 226 (377)
.. ...+.++.. ++++++++|+|++.+.||++.+++|++.+ ++++++++|+|+. +.+++++. ..+|.
T Consensus 179 ~~~~~~~~~~~~~~-~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~~~v~ 256 (374)
T 2iw1_A 179 IPNSREIYRQKNGI-KEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKP-RKFEALAEKLGVRSNVH 256 (374)
T ss_dssp CTTHHHHHHHHTTC-CTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSCC-HHHHHHHHHHTCGGGEE
T ss_pred chhHHHHHHHHhCC-CCCCeEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCCH-HHHHHHHHHcCCCCcEE
Confidence 32 223344432 34678999999999999999999999987 3689999998874 55555544 34799
Q ss_pred EccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeC-CCCHHHHHHHH
Q 017114 227 FTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFN-PGDLDDCLSKL 305 (377)
Q Consensus 227 ~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~l~~~i 305 (377)
+.|+. +++..+|+.||++|+||..|++|++++|||+||+|||+++.++..+++ .++.+|++++ +.|+++++++|
T Consensus 257 ~~g~~--~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~i---~~~~~g~~~~~~~~~~~l~~~i 331 (374)
T 2iw1_A 257 FFSGR--NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYI---ADANCGTVIAEPFSQEQLNEVL 331 (374)
T ss_dssp EESCC--SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTHHH---HHHTCEEEECSSCCHHHHHHHH
T ss_pred ECCCc--ccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEEecCCCchhhh---ccCCceEEeCCCCCHHHHHHHH
Confidence 99974 899999999999999999999999999999999999999999999999 7888999998 88999999999
Q ss_pred HHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 017114 306 EPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 347 (377)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~ 347 (377)
.++++|++.++++++++++.+++++|+.+.+++. .+++..+
T Consensus 332 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l 372 (374)
T 2iw1_A 332 RKALTQSPLRMAWAENARHYADTQDLYSLPEKAA-DIITGGL 372 (374)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHSCCSCHHHHHH-HHHHCC-
T ss_pred HHHHcChHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHhh
Confidence 9999999999999999999999899999999998 5776543
No 13
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=6.3e-39 Score=289.69 Aligned_cols=278 Identities=20% Similarity=0.240 Sum_probs=214.7
Q ss_pred HHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeE-ec
Q 017114 45 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL-VP 123 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii-~~ 123 (377)
..+.+.+++.+||+||+|++....+..+ + + .++|+|++.|+..+.. ....+...+.++..+|.++ ++
T Consensus 116 ~~~~~~l~~~~~Dvv~~~~~~~~~~~~~-~-~-~~~p~v~~~h~~~~~~---------~~~~~~~~~~~~~~~~~~i~~~ 183 (416)
T 2x6q_A 116 RENSKFIDLSSFDYVLVHDPQPAALIEF-Y-E-KKSPWLWRCHIDLSSP---------NREFWEFLRRFVEKYDRYIFHL 183 (416)
T ss_dssp HHHHHSSCGGGSSEEEEESSTTGGGGGG-S-C-CCSCEEEECCSCCSSC---------CHHHHHHHHHHHTTSSEEEESS
T ss_pred HHHHHHHhhcCCCEEEEeccchhhHHHH-H-H-hcCCEEEEEccccCCc---------cHHHHHHHHHHHHhCCEEEEec
Confidence 3455666778999999998755443322 2 2 2389999999865431 1122233445566777766 56
Q ss_pred ChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCc----hHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC
Q 017114 124 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRS----SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL 199 (377)
Q Consensus 124 s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l 199 (377)
|+...+. .+..++.++|||+|...+.+.... ...+.++.. ++++++++++|++.+.||++.+++|++.+
T Consensus 184 s~~~~~~------~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~i~~vGrl~~~Kg~~~li~a~~~l 256 (416)
T 2x6q_A 184 PEYVQPE------LDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFDV-DPEKPIITQVSRFDPWKGIFDVIEIYRKV 256 (416)
T ss_dssp GGGSCTT------SCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTTC-CTTSCEEEEECCCCTTSCHHHHHHHHHHH
T ss_pred hHHHHhh------CCccceEEeCCCCChhhhcccccChhhHHHHHHHhCC-CCCCcEEEEEeccccccCHHHHHHHHHHH
Confidence 6554432 234689999999998766543221 223333332 35678999999999999999999999876
Q ss_pred ----CCceEEEEecCcc-----HHHHHHhhc----CCCEEEccccC---chhHHHHHhcCCEEEeccCCcccchHHHHHH
Q 017114 200 ----PEARIAFIGDGPY-----REELEKMFT----GMPAVFTGMLL---GEELSQAYASGDVFVMPSESETLGLVVLEAM 263 (377)
Q Consensus 200 ----~~~~l~i~G~g~~-----~~~l~~~~~----~~~v~~~g~~~---~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~ 263 (377)
|+++|+|+|+|+. .+.++++.+ ..+|.|.|+++ ++++..+|+.||++|+||..|++|++++|||
T Consensus 257 ~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAm 336 (416)
T 2x6q_A 257 KEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAM 336 (416)
T ss_dssp HHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHH
T ss_pred HHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHH
Confidence 6899999999863 333444332 35899999775 5799999999999999999999999999999
Q ss_pred hcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHH
Q 017114 264 SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTIRNEQ 342 (377)
Q Consensus 264 a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~l 342 (377)
+||+|||+++.++.++++ .++.+|++++ |+++++++|.++++|++.++++++++++.++ +|+|+.+++++. .+
T Consensus 337 a~G~PvI~~~~~g~~e~i---~~~~~g~l~~--d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~-~~ 410 (416)
T 2x6q_A 337 WKGKPVIGRAVGGIKFQI---VDGETGFLVR--DANEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFIITKHMERYL-DI 410 (416)
T ss_dssp HTTCCEEEESCHHHHHHC---CBTTTEEEES--SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH-HH
T ss_pred HcCCCEEEccCCCChhhe---ecCCCeEEEC--CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHH-HH
Confidence 999999999999999999 8888999997 9999999999999999999999999999985 899999999999 69
Q ss_pred HHHHH
Q 017114 343 YNAAI 347 (377)
Q Consensus 343 y~~~~ 347 (377)
|++++
T Consensus 411 ~~~l~ 415 (416)
T 2x6q_A 411 LNSLG 415 (416)
T ss_dssp HHTC-
T ss_pred HHHhh
Confidence 98764
No 14
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=7.9e-37 Score=281.09 Aligned_cols=287 Identities=18% Similarity=0.219 Sum_probs=213.4
Q ss_pred CCCEEEeCCCchhHHHHHHHHHh------hCCCEEEEeccCCcccc------cccccccc---------------hhhHH
Q 017114 55 KPDIIHASSPGIMVFGALIIAKL------LCVPIVMSYHTHVPVYI------PRYTFSWL---------------VKPMW 107 (377)
Q Consensus 55 ~pDii~~~~~~~~~~~~~~~~~~------~~~~~i~~~h~~~~~~~------~~~~~~~~---------------~~~~~ 107 (377)
.+||+|+|++.....+.++.... .++|+|+++|+...... ........ .....
T Consensus 153 ~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (536)
T 3vue_A 153 EDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKI 232 (536)
T ss_dssp SCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEE
T ss_pred CCEEEEECcchHHHHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccch
Confidence 46788899976554443332222 37899999998543211 00000000 00011
Q ss_pred HHHHHHHhcCCeeEecChhHHHHHHHhcc--------cCCCcEEEecCCCCCCCCCCccCc-------------------
Q 017114 108 LVIKFLHRAADLTLVPSVAIGKDLEAARV--------TAANKIRIWKKGVDSESFHPRFRS------------------- 160 (377)
Q Consensus 108 ~~~~~~~~~~d~ii~~s~~~~~~~~~~~~--------~~~~~i~~i~~gv~~~~~~~~~~~------------------- 160 (377)
.+.+..+..||.|+++|+..++.+.+.+. ....++.+|+||+|.+.|.|....
T Consensus 233 n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k 312 (536)
T 3vue_A 233 NWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNK 312 (536)
T ss_dssp EHHHHHHHHCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHH
T ss_pred hHHHHHHHhccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHH
Confidence 35678889999999999999998876432 235689999999999999875321
Q ss_pred hHHHHHhhCC-CCCCCeEEEeecccccccHHHHHHHHHhC--CCceEEEEecCccH--HHHHHhhc--CCCEEEccccCc
Q 017114 161 SEMRWRLSNG-EPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPYR--EELEKMFT--GMPAVFTGMLLG 233 (377)
Q Consensus 161 ~~~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~l~~a~~~l--~~~~l~i~G~g~~~--~~l~~~~~--~~~v~~~g~~~~ 233 (377)
......+.+. .++.++|+|+||+.++||++.+++|+..+ ++.+++++|.|+.. ..++.... ..++.+.+..+.
T Consensus 313 ~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~ 392 (536)
T 3vue_A 313 EALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNA 392 (536)
T ss_dssp HHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCH
T ss_pred HHHHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccH
Confidence 1112222222 35678999999999999999999999987 56899999977532 33333333 347999999999
Q ss_pred hhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeE----------EeCCCCHHHHHH
Q 017114 234 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGY----------LFNPGDLDDCLS 303 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~----------~~~~~~~~~l~~ 303 (377)
+++..+|+.||++|+||.+|+||++++|||+||+|||+++.|+.+|++ .++.+|+ ++++.|+++|++
T Consensus 393 ~~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V---~dg~~G~~~~~~~~~g~l~~~~d~~~la~ 469 (536)
T 3vue_A 393 PLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTV---IEGKTGFHMGRLSVDCKVVEPSDVKKVAA 469 (536)
T ss_dssp HHHHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHC---CBTTTEEECCCCCSCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchhee---eCCCCccccccCCCceeEECCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999 8888888 667778999999
Q ss_pred HHHHHhh--CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 017114 304 KLEPLLY--NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 347 (377)
Q Consensus 304 ~i~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~ 347 (377)
+|.++++ +.+.++++.+++.+ ++|||++.+++|. ++|+++.
T Consensus 470 ai~ral~~~~~~~~~~~~~~am~--~~fSW~~~A~~y~-~ly~~L~ 512 (536)
T 3vue_A 470 TLKRAIKVVGTPAYEEMVRNCMN--QDLSWKGPAKNWE-NVLLGLG 512 (536)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHH--SCCSSHHHHHHHH-HHHHTTC
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH--hcCCHHHHHHHHH-HHHHHhh
Confidence 9988775 44445666655432 4799999999999 6999873
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=100.00 E-value=3.2e-36 Score=269.35 Aligned_cols=264 Identities=10% Similarity=0.035 Sum_probs=192.4
Q ss_pred cCCCEEEeCCCchhHHHHHHHH----Hh---hCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCC--eeEecC
Q 017114 54 FKPDIIHASSPGIMVFGALIIA----KL---LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD--LTLVPS 124 (377)
Q Consensus 54 ~~pDii~~~~~~~~~~~~~~~~----~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~ii~~s 124 (377)
.+||+||++++... ..+..+. .. ...|.++..|++.+...+.. ..+.+.+..++.++ .++++|
T Consensus 131 ~~~Dvv~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~vi~~S 202 (413)
T 2x0d_A 131 AKHDIFIATAWWTA-YAAQRIVSWQSDTYGIPPNKILYIIQDFEPGFYQWS-------SQYVLAESTYKYRGPQIAVFNS 202 (413)
T ss_dssp CTTEEEEECSHHHH-HHHHHHHHHHHHHHTCCCCCEEEEECSCGGGGSCSS-------HHHHHHHHTTSCCSCEEEEEES
T ss_pred CCCCEEEEehHHHH-HHHHHhhhhhhhhcccccCcEEEEEeechhhcCccC-------hHHHHHHHHhccCCceEEEEcC
Confidence 47999999874322 2211111 11 24688888888765432111 12234556667665 588999
Q ss_pred hhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecc-cccccHHHHHHHHHhC----
Q 017114 125 VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDFLKRVMDRL---- 199 (377)
Q Consensus 125 ~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~-~~~k~~~~l~~a~~~l---- 199 (377)
+.+++.+.+.+. +..++.+++||+|.+.+.+.. ...+++..++++|++ .+.||++.+++|++.+
T Consensus 203 ~~~~~~l~~~g~-~~~~~~~i~~g~d~~~~~~~~----------~~~~~~~~il~~gr~~~~~Kg~~~li~A~~~l~~~~ 271 (413)
T 2x0d_A 203 ELLKQYFNNKGY-NFTDEYFFQPKINTTLKNYIN----------DKRQKEKIILVYGRPSVKRNAFTLIVEALKIFVQKY 271 (413)
T ss_dssp HHHHHHHHHHTC-CCSEEEEECCCCCHHHHTTTT----------SCCCCCSEEEEEECTTCGGGCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCC-CCCceEEeCCCcCchhhcccc----------cccCCCCEEEEEecCchhccCHHHHHHHHHHHHHhC
Confidence 999999988743 345788999999876443210 023356678899996 6889999999999876
Q ss_pred CC---ceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCC
Q 017114 200 PE---ARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 276 (377)
Q Consensus 200 ~~---~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~ 276 (377)
|+ ++++++|+|+... ++....+|.|.|+++.+|+..+|+.||++|+||..|+||++++||||||+|||+++ ++
T Consensus 272 ~~~~~~~l~ivG~~~~~~---~l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~~~-~g 347 (413)
T 2x0d_A 272 DRSNEWKIISVGEKHKDI---ALGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVITNK-YE 347 (413)
T ss_dssp TTGGGCEEEEEESCCCCE---EEETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEEEC-BT
T ss_pred CCCCceEEEEEcCCchhh---hcCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEEeC-CC
Confidence 44 8999999886541 12223479999999999999999999999999999999999999999999999954 55
Q ss_pred CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 017114 277 IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 348 (377)
Q Consensus 277 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~~ 348 (377)
..|++ .++.+|+++++.|+++++++|.++++|++.+++ ++++.+++|+|+...+++ ++|+++++
T Consensus 348 ~~e~v---~~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~---~~~~~~~~~~W~~~~~~~--~~~~~l~~ 411 (413)
T 2x0d_A 348 NKDLS---NWHSNIVSLEQLNPENIAETLVELCMSFNNRDV---DKKESSNMMFYINEFNEF--SFIKEIEE 411 (413)
T ss_dssp TBCGG---GTBTTEEEESSCSHHHHHHHHHHHHHHTC----------CCBSCGGGCCCC-----TTHHHHHT
T ss_pred cchhh---hcCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH---hHHHHHHhCCHHHHHHHH--HHHHHHHh
Confidence 68998 788899999999999999999999998887766 555556689999999884 47888753
No 16
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=100.00 E-value=2.1e-35 Score=264.44 Aligned_cols=253 Identities=15% Similarity=0.145 Sum_probs=194.0
Q ss_pred HHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChh
Q 017114 47 IISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVA 126 (377)
Q Consensus 47 ~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~ 126 (377)
+.+.++ ++|+||..... ... ...+++..++|++++.|+..... . .........+++..++.+|.++++|+.
T Consensus 118 l~~~~~--~~DvIh~~~~~-~~~-~~~~~~~~~~p~v~~~h~~~~~~--~---~~~~~~~~~~~~~~~~~ad~vi~~S~~ 188 (406)
T 2hy7_A 118 LLDWMR--ESDVIVFESGI-AVA-FIELAKRVNPAAKLVYRASDGLS--T---INVASYIEREFDRVAPTLDVIALVSPA 188 (406)
T ss_dssp HHHHHH--HCSEEEEESSG-GGG-GHHHHHHHCTTSEEEEEESSCHH--H---HTCCHHHHHHHHHHGGGCSEEEESCGG
T ss_pred HHHHhc--CCCEEEECCch-HHH-HHHHHHHhCCCEEEEEeccchhh--c---ccccHHHHHHHHHHHHhCCEEEEcCHH
Confidence 444444 78999954322 111 11355678999999999753210 0 001233456788899999999999999
Q ss_pred HHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCCCceEEE
Q 017114 127 IGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAF 206 (377)
Q Consensus 127 ~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i 206 (377)
.++.+.+.+ ++.+||||+|.+.|.+.... ..+++++++|+|++.+.||+ +..+.+..++++|+|
T Consensus 189 ~~~~~~~~~-----~i~vipngvd~~~f~~~~~~---------~~~~~~~i~~vGrl~~~Kg~--~~~l~~~~~~~~l~i 252 (406)
T 2hy7_A 189 MAAEVVSRD-----NVFHVGHGVDHNLDQLGDPS---------PYAEGIHAVAVGSMLFDPEF--FVVASKAFPQVTFHV 252 (406)
T ss_dssp GGGGCSCST-----TEEECCCCBCTTHHHHHCSC---------SCCSSEEEEEECCTTBCHHH--HHHHHHHCTTEEEEE
T ss_pred HHHHHHhcC-----CEEEEcCCcChHhcCccccc---------ccCCCcEEEEEeccccccCH--HHHHHHhCCCeEEEE
Confidence 988876543 89999999998876543211 12234789999999999999 444445668999999
Q ss_pred EecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHH-------hcCCCeEEecCCCCCc
Q 017114 207 IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM-------SSGIPVVGVRAGGIPD 279 (377)
Q Consensus 207 ~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~-------a~G~PvI~~~~~~~~~ 279 (377)
+|+|+ .+++....+|.|.|+++++++..+|+.||++|+||..|++|++++||| |||+|||+|+.
T Consensus 253 vG~g~----~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~----- 323 (406)
T 2hy7_A 253 IGSGM----GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA----- 323 (406)
T ss_dssp ESCSS----CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG-----
T ss_pred EeCch----HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh-----
Confidence 99987 222223457999999999999999999999999999999999999999 99999999987
Q ss_pred cccccCCCCeeEE-eCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHH
Q 017114 280 IIPEDQDGKIGYL-FNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQ--YNAAI 347 (377)
Q Consensus 280 ~~~~~~~~~~g~~-~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~l--y~~~~ 347 (377)
+ .++.+|++ ++++|+++++++|.++++|++ ++..++|+|+.++++++ ++ |+++.
T Consensus 324 -v---~~~~~G~l~v~~~d~~~la~ai~~ll~~~~---------~~~~~~~sw~~~a~~~~-~~~~y~~~~ 380 (406)
T 2hy7_A 324 -V---VGPYKSRFGYTPGNADSVIAAITQALEAPR---------VRYRQCLNWSDTTDRVL-DPRAYPETR 380 (406)
T ss_dssp -G---TCSCSSEEEECTTCHHHHHHHHHHHHHCCC---------CCCSCCCBHHHHHHHHH-CGGGSGGGB
T ss_pred -c---ccCcceEEEeCCCCHHHHHHHHHHHHhCcc---------hhhhhcCCHHHHHHHHH-HhhcccccC
Confidence 5 56778999 999999999999999999876 12235799999999999 57 77653
No 17
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=100.00 E-value=1.9e-33 Score=249.32 Aligned_cols=301 Identities=17% Similarity=0.141 Sum_probs=219.7
Q ss_pred CCcEEEEEeeCCCCCc---cccCceeecccCCCCCccc------cccccccchHHHHHHHHhcCCCEEEeCCCchhHHHH
Q 017114 1 MGDEVMVVTTHEGVPQ---EFYGAKLIGSRSFPCPWYQ------KVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGA 71 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~ 71 (377)
+||+|++++....... ...++++..+.....+... .....+.....+.+.+++.+||+||++++... +.+
T Consensus 33 ~G~~V~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvv~~~~~~~~-~~~ 111 (364)
T 1f0k_A 33 QGWQVRWLGTADRMEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMGGYVS-GPG 111 (364)
T ss_dssp TTCEEEEEECTTSTHHHHGGGGTCEEEECCCCCCTTCCHHHHHTCHHHHHHHHHHHHHHHHHHCCSEEEECSSTTH-HHH
T ss_pred cCCEEEEEecCCcchhhhccccCCceEEecCCccCcCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcCc-hHH
Confidence 5999999998764221 1124554443322111100 00111223456788889999999999975433 334
Q ss_pred HHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCC
Q 017114 72 LIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDS 151 (377)
Q Consensus 72 ~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~ 151 (377)
..+++..++|++++.|+.++. ...+++.+.+|.+++.++.. . + ++.+++||++.
T Consensus 112 ~~~~~~~~~p~v~~~~~~~~~---------------~~~~~~~~~~d~v~~~~~~~-------~--~--~~~~i~n~v~~ 165 (364)
T 1f0k_A 112 GLAAWSLGIPVVLHEQNGIAG---------------LTNKWLAKIATKVMQAFPGA-------F--P--NAEVVGNPVRT 165 (364)
T ss_dssp HHHHHHTTCCEEEEECSSSCC---------------HHHHHHTTTCSEEEESSTTS-------S--S--SCEECCCCCCH
T ss_pred HHHHHHcCCCEEEEecCCCCc---------------HHHHHHHHhCCEEEecChhh-------c--C--CceEeCCccch
Confidence 557788899999998885421 13456778999999988764 1 2 57799999987
Q ss_pred CCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCC-Cce-EEEEecCccHHHHHHhhcC---CCEE
Q 017114 152 ESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP-EAR-IAFIGDGPYREELEKMFTG---MPAV 226 (377)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~-~~~-l~i~G~g~~~~~l~~~~~~---~~v~ 226 (377)
+.+.+.. .+..+....+...++++.|++.+.|+.+.+++|++.++ +++ ++++|+|+. +.+++.+.+ .+|.
T Consensus 166 ~~~~~~~----~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~~~~~l~i~G~~~~-~~l~~~~~~~~~~~v~ 240 (364)
T 1f0k_A 166 DVLALPL----PQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQSGKGSQ-QSVEQAYAEAGQPQHK 240 (364)
T ss_dssp HHHTSCC----HHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGGGEEEEEECCTTCH-HHHHHHHHHTTCTTSE
T ss_pred hhcccch----hhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcCCcEEEEEcCCchH-HHHHHHHhhcCCCceE
Confidence 7654421 12233222222335556679999999999999999885 677 567888873 566655442 3799
Q ss_pred EccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCC--------ccccccCCCCeeEEeCCCC-
Q 017114 227 FTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP--------DIIPEDQDGKIGYLFNPGD- 297 (377)
Q Consensus 227 ~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~--------~~~~~~~~~~~g~~~~~~~- 297 (377)
+.|++ +++..+|+.||++|+||. |++++|||++|+|||+++.++.+ ++. +++ .|++++++|
T Consensus 241 ~~g~~--~~~~~~~~~ad~~v~~sg----~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~---~~g-~g~~~~~~d~ 310 (364)
T 1f0k_A 241 VTEFI--DDMAAAYAWADVVVCRSG----ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLE---KAG-AAKIIEQPQL 310 (364)
T ss_dssp EESCC--SCHHHHHHHCSEEEECCC----HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHH---HTT-SEEECCGGGC
T ss_pred Eecch--hhHHHHHHhCCEEEECCc----hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHH---hCC-cEEEeccccC
Confidence 99999 899999999999999983 99999999999999999998764 344 344 599999888
Q ss_pred -HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017114 298 -LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 346 (377)
Q Consensus 298 -~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~ 346 (377)
+++++++|.++ |++.++++++++++.+++|+|+.+++++. .+|++.
T Consensus 311 ~~~~la~~i~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~ 357 (364)
T 1f0k_A 311 SVDAVANTLAGW--SRETLLTMAERARAASIPDATERVANEVS-RVARAL 357 (364)
T ss_dssp CHHHHHHHHHTC--CHHHHHHHHHHHHHTCCTTHHHHHHHHHH-HHHTTC
T ss_pred CHHHHHHHHHhc--CHHHHHHHHHHHHHhhccCHHHHHHHHHH-HHHHHH
Confidence 99999999998 99999999999998888899999999998 688764
No 18
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=100.00 E-value=7.5e-34 Score=252.99 Aligned_cols=279 Identities=18% Similarity=0.172 Sum_probs=208.6
Q ss_pred chHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEe
Q 017114 43 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 122 (377)
Q Consensus 43 ~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 122 (377)
....+.+.+++.+||+||+|+.....+.+..+++..++|++.+.|+... ...+ ..+ ......+.+.+.+|.+++
T Consensus 83 ~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~--~~~~-~~~---~~~~~~~~~~~~~d~ii~ 156 (375)
T 3beo_A 83 GLEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGLRT--WDKY-SPY---PEEMNRQLTGVMADLHFS 156 (375)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCCCC--SCTT-SST---THHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccc--cccc-CCC---hhHhhhhHHhhhhheeeC
Confidence 3456888899999999999876444555556778889999977665421 0000 011 111223344566999999
Q ss_pred cChhHHHHHHHhcccCCCcEEEecCC-CCCCCCCCcc-CchHHHHHhhCCCCCCCeEEEeeccccc-ccHHHHHHHHHhC
Q 017114 123 PSVAIGKDLEAARVTAANKIRIWKKG-VDSESFHPRF-RSSEMRWRLSNGEPDKPLIVHVGRLGVE-KSLDFLKRVMDRL 199 (377)
Q Consensus 123 ~s~~~~~~~~~~~~~~~~~i~~i~~g-v~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~G~~~~~-k~~~~l~~a~~~l 199 (377)
.|+..++.+.+.+ .+.+++.+++|| +|...+.+.. .....+.++ .+++++++++|++.+. ||++.+++|++.+
T Consensus 157 ~s~~~~~~~~~~g-~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~---~~~~~vl~~~gr~~~~~K~~~~li~a~~~l 232 (375)
T 3beo_A 157 PTAKSATNLQKEN-KDESRIFITGNTAIDALKTTVKETYSHPVLEKL---GNNRLVLMTAHRRENLGEPMRNMFRAIKRL 232 (375)
T ss_dssp SSHHHHHHHHHTT-CCGGGEEECCCHHHHHHHHHCCSSCCCHHHHTT---TTSEEEEEECCCGGGTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcC-CCcccEEEECChhHhhhhhhhhhhhhHHHHHhc---cCCCeEEEEecccccchhHHHHHHHHHHHH
Confidence 9999999998764 456789999999 7765443321 112222222 2345577899998875 9999999999765
Q ss_pred ----CCceEEEEecCcc---HHHHHHhhcC-CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEE
Q 017114 200 ----PEARIAFIGDGPY---REELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 200 ----~~~~l~i~G~g~~---~~~l~~~~~~-~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 271 (377)
|++++++ |.|+. .+.++++... .+|.|.|+++..++..+|+.||++|+|| |+.++|||+||+|||+
T Consensus 233 ~~~~~~~~~i~-~~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~s-----g~~~lEA~a~G~Pvi~ 306 (375)
T 3beo_A 233 VDKHEDVQVVY-PVHMNPVVRETANDILGDYGRIHLIEPLDVIDFHNVAARSYLMLTDS-----GGVQEEAPSLGVPVLV 306 (375)
T ss_dssp HHHCTTEEEEE-ECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCSEEEECC-----HHHHHHHHHHTCCEEE
T ss_pred HhhCCCeEEEE-eCCCCHHHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCcEEEECC-----CChHHHHHhcCCCEEE
Confidence 6788554 65543 3445554332 5899999999899999999999999998 6779999999999999
Q ss_pred ecC-CCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 017114 272 VRA-GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQY 343 (377)
Q Consensus 272 ~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly 343 (377)
++. ++.++++ +++ +|+++++ |+++++++|.++++|++.+++|++++++..++|+|+.+++.+. .++
T Consensus 307 ~~~~~~~~e~v---~~g-~g~~v~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~ 373 (375)
T 3beo_A 307 LRDTTERPEGI---EAG-TLKLAGT-DEETIFSLADELLSDKEAHDKMSKASNPYGDGRASERIVEAIL-KHF 373 (375)
T ss_dssp CSSCCSCHHHH---HTT-SEEECCS-CHHHHHHHHHHHHHCHHHHHHHCCCCCTTCCSCHHHHHHHHHH-HHT
T ss_pred ecCCCCCceee---cCC-ceEEcCC-CHHHHHHHHHHHHhChHhHhhhhhcCCCCCCCcHHHHHHHHHH-HHh
Confidence 964 8889988 666 8999976 9999999999999999999999998887767899999999887 344
No 19
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=100.00 E-value=6.2e-34 Score=254.35 Aligned_cols=289 Identities=15% Similarity=0.110 Sum_probs=213.3
Q ss_pred chHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHH-HHhcCCeeE
Q 017114 43 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKF-LHRAADLTL 121 (377)
Q Consensus 43 ~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~ii 121 (377)
....+.+.+++.+||+||+++.....+...++++..++|++++.|+.... ..+ . .......+. +.+.+|.++
T Consensus 74 ~~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~~--~~~--~---~~~~~~~~~~~~~~~d~ii 146 (384)
T 1vgv_A 74 ILEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTG--DLY--S---PWPEEANRTLTGHLAMYHF 146 (384)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCS--CTT--S---STTHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEecccccc--ccc--C---CCchHhhHHHHHhhccEEE
Confidence 35678889999999999999763444555567788899999988875321 100 0 111122333 356799999
Q ss_pred ecChhHHHHHHHhcccCCCcEEEecCCC-CCCCCCCcc-C--c---hHHHHHhh-CCCCCCCeEEEeeccccc-ccHHHH
Q 017114 122 VPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRF-R--S---SEMRWRLS-NGEPDKPLIVHVGRLGVE-KSLDFL 192 (377)
Q Consensus 122 ~~s~~~~~~~~~~~~~~~~~i~~i~~gv-~~~~~~~~~-~--~---~~~~~~~~-~~~~~~~~i~~~G~~~~~-k~~~~l 192 (377)
+.|+..++.+.+.+ .+.+++.+++|++ |...+.+.. . . ...+.++. ...+++.+++++|++.+. ||++.+
T Consensus 147 ~~s~~~~~~l~~~g-~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~l 225 (384)
T 1vgv_A 147 SPTETSRQNLLREN-VADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEI 225 (384)
T ss_dssp ESSHHHHHHHHHTT-CCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHH
T ss_pred cCcHHHHHHHHHcC-CChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccccchHHHHH
Confidence 99999999998754 4567899999995 322211110 0 0 01222222 212344678899999876 999999
Q ss_pred HHHHHhC----CCceEEEE-ecCc-cHHHHHHhhcC-CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhc
Q 017114 193 KRVMDRL----PEARIAFI-GDGP-YREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSS 265 (377)
Q Consensus 193 ~~a~~~l----~~~~l~i~-G~g~-~~~~l~~~~~~-~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~ 265 (377)
++|+..+ +++++++. |.++ ..+.++++... .+|.|.|+++.+++..+|+.||++|+|| |..++|||++
T Consensus 226 i~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~lEA~a~ 300 (384)
T 1vgv_A 226 CHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDS-----GGIQEEAPSL 300 (384)
T ss_dssp HHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHCSEEEESS-----STGGGTGGGG
T ss_pred HHHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhcCCCEEEeCCCCHHHHHHHHHhCcEEEECC-----cchHHHHHHc
Confidence 9999765 68888875 5453 55666666443 5899999888899999999999999999 4458999999
Q ss_pred CCCeEEecC-CCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 017114 266 GIPVVGVRA-GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 344 (377)
Q Consensus 266 G~PvI~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~ 344 (377)
|+|||+++. ++.++++ +++ +|+++++ |+++++++|.++++|++.+++|+++++++.+.|+|+.+++.+. .+|+
T Consensus 301 G~PvI~~~~~~~~~e~v---~~g-~g~lv~~-d~~~la~~i~~ll~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~ 374 (384)
T 1vgv_A 301 GKPVLVMRDTTERPEAV---TAG-TVRLVGT-DKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALK-NNRI 374 (384)
T ss_dssp TCCEEEESSCCSCHHHH---HHT-SEEEECS-SHHHHHHHHHHHHHCHHHHHHHHSSCCTTCCSCHHHHHHHHHH-HTCC
T ss_pred CCCEEEccCCCCcchhh---hCC-ceEEeCC-CHHHHHHHHHHHHhChHHHhhhhhccCCCcCCCHHHHHHHHHH-HHHH
Confidence 999999986 8888888 666 8999977 9999999999999999999999998887767899999999998 6888
Q ss_pred HHHHHH
Q 017114 345 AAIWFW 350 (377)
Q Consensus 345 ~~~~~~ 350 (377)
++.+.+
T Consensus 375 ~~~~~~ 380 (384)
T 1vgv_A 375 SLGSHH 380 (384)
T ss_dssp CC----
T ss_pred hhcccc
Confidence 776544
No 20
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.98 E-value=1.9e-31 Score=241.25 Aligned_cols=276 Identities=16% Similarity=0.109 Sum_probs=201.0
Q ss_pred CCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHh
Q 017114 55 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 134 (377)
Q Consensus 55 ~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 134 (377)
.+|+||+|++....++.++..+..++|+++++|..+|.........+ ...+.+ .+..+|.+.+.+....+.+...
T Consensus 123 ~~DiV~vHdyhl~~l~~~lr~~~~~~~i~~~~H~pfp~~~~~~~lp~----~~~il~-~ll~~d~i~f~~~~~~~~f~~~ 197 (482)
T 1uqt_A 123 DDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPT----YDTLLE-QLCDYDLLGFQTENDRLAFLDC 197 (482)
T ss_dssp TTCEEEEESGGGTTHHHHHHHTTCCSCEEEECCSCCCCHHHHTTSTT----HHHHHH-HHTTSSEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHhCCCCcEEEEEcCCCCCHHHHhhCcc----HHHHHH-hhhccCeEEEECHHHHHHHHHH
Confidence 56999999976666655543344589999999997654211111111 011111 1235677766666555554321
Q ss_pred ----------------cccCCCcEEEecCCCCCCCCCCccC------chHHHHHhhCCCCCCCeEEEeecccccccHHHH
Q 017114 135 ----------------RVTAANKIRIWKKGVDSESFHPRFR------SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFL 192 (377)
Q Consensus 135 ----------------~~~~~~~i~~i~~gv~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l 192 (377)
+.....++.++|||+|.+.|.+... ....+.++ .++++|+++||+++.||++.+
T Consensus 198 ~~~~l~~~~~~~~~~~~~g~~~~v~vip~GID~~~f~~~~~~~~~~~~~~lr~~~----~~~~vil~VgRl~~~Kgi~~l 273 (482)
T 1uqt_A 198 LSNLTRVTTRSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAEL----KNVQNIFSVERLDYSKGLPER 273 (482)
T ss_dssp HHHHSCEEEETTTEEEETTEEEEEEECCCCCCHHHHHHHHHSCCCHHHHHHHHHT----TTCEEEEEECCBCGGGCHHHH
T ss_pred HHHHhCCccccCCeEEECCeEEEEEEEeccCCHHHHHHHhcCcchHHHHHHHHHh----CCCEEEEEEeCCcccCCHHHH
Confidence 0112357899999999887754211 12233333 267899999999999999999
Q ss_pred HHHHHhC----C----CceEEEEec-----Ccc----HHHHHHhhcC----------CCEE-EccccCchhHHHHHhcCC
Q 017114 193 KRVMDRL----P----EARIAFIGD-----GPY----REELEKMFTG----------MPAV-FTGMLLGEELSQAYASGD 244 (377)
Q Consensus 193 ~~a~~~l----~----~~~l~i~G~-----g~~----~~~l~~~~~~----------~~v~-~~g~~~~~~~~~~~~~ad 244 (377)
++|++.+ | ++.|+++|. ++. .+++++++.+ ..|. +.|.++.+++..+|+.||
T Consensus 274 l~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~AD 353 (482)
T 1uqt_A 274 FLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSD 353 (482)
T ss_dssp HHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHCS
T ss_pred HHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHcc
Confidence 9999866 4 367888984 222 2344444321 1366 478999999999999999
Q ss_pred EEEeccCCcccchHHHHHHhcCC-----CeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh-CHHHHHHH
Q 017114 245 VFVMPSESETLGLVVLEAMSSGI-----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETM 318 (377)
Q Consensus 245 i~v~ps~~e~~~~~~~Ea~a~G~-----PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~-~~~~~~~~ 318 (377)
++|+||..||||++++||||||+ |+|+|+.+|..+.+ . +|++++|.|+++++++|.++++ +++.++++
T Consensus 354 v~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l---~---~g~lv~p~d~~~lA~ai~~lL~~~~~~r~~~ 427 (482)
T 1uqt_A 354 VGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL---T---SALIVNPYDRDEVAAALDRALTMSLAERISR 427 (482)
T ss_dssp EEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTC---T---TSEEECTTCHHHHHHHHHHHHTCCHHHHHHH
T ss_pred EEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHh---C---CeEEECCCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999997 89999988877777 3 6899999999999999999998 56788999
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017114 319 GQAARQEMEKYDWRAATRTIRNEQYNAA 346 (377)
Q Consensus 319 ~~~~~~~~~~~s~~~~~~~~~~~ly~~~ 346 (377)
.+++++.+++|+|+.++++++ ..|+++
T Consensus 428 ~~~~~~~v~~~s~~~~a~~~l-~~l~~~ 454 (482)
T 1uqt_A 428 HAEMLDVIVKNDINHWQECFI-SDLKQI 454 (482)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH-HHHHHS
T ss_pred HHHHHHHHHhCCHHHHHHHHH-HHHHhc
Confidence 999999998899999999999 577664
No 21
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.98 E-value=6.4e-31 Score=238.51 Aligned_cols=293 Identities=14% Similarity=0.109 Sum_probs=203.1
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccc----cccc----ccc----------chhhHHHHHHHHHh
Q 017114 54 FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYI----PRYT----FSW----------LVKPMWLVIKFLHR 115 (377)
Q Consensus 54 ~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~----~~~~----~~~----------~~~~~~~~~~~~~~ 115 (377)
.+|||+|+|.+.....+.++..+..++|+|+++|....... .... ... .......+++....
T Consensus 180 ~~pdIiH~HDW~tg~~~~~Lk~~~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKaga~ 259 (725)
T 3nb0_A 180 QHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAAH 259 (725)
T ss_dssp SEEEEEEEESGGGCTHHHHHHHTTCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcEEEeCchhhhHHHHHHHHhCCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHHHHH
Confidence 45999999998665554443334568999999998631111 0000 000 01123457888999
Q ss_pred cCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccC----chHHHHHh--------h--CC--CCCCCeEEE
Q 017114 116 AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFR----SSEMRWRL--------S--NG--EPDKPLIVH 179 (377)
Q Consensus 116 ~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~----~~~~~~~~--------~--~~--~~~~~~i~~ 179 (377)
.||.|+++|+.+++.+...+..+.+.+ ||||+|.+.|.|... ....+.++ . +. .++.+++..
T Consensus 260 ~AD~ITTVS~~yA~Ei~~Ll~r~~d~i--IpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~dk~liifi 337 (725)
T 3nb0_A 260 SADVFTTVSQITAFEAEHLLKRKPDGI--LPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFFI 337 (725)
T ss_dssp HSSEEEESSHHHHHHHHHHTSSCCSEE--CCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGGGEEEEEE
T ss_pred hCCEEEECCHHHHHHHHHHhcCCCCEE--EcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCCceeEEEE
Confidence 999999999999999998766554544 999999999987521 11111121 1 11 223445556
Q ss_pred eeccc-ccccHHHHHHHHHhCC--------C---ceEEEEecCc---c--------------------------------
Q 017114 180 VGRLG-VEKSLDFLKRVMDRLP--------E---ARIAFIGDGP---Y-------------------------------- 212 (377)
Q Consensus 180 ~G~~~-~~k~~~~l~~a~~~l~--------~---~~l~i~G~g~---~-------------------------------- 212 (377)
+||+. ..||++.+++|+.++. + +.|+|+..+. .
T Consensus 338 vgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 417 (725)
T 3nb0_A 338 AGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDHA 417 (725)
T ss_dssp ESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 89999 6899999999998772 1 4566655321 0
Q ss_pred ---------------HHH---------HH----------------------------------HhhcC----CC--EEEc
Q 017114 213 ---------------REE---------LE----------------------------------KMFTG----MP--AVFT 228 (377)
Q Consensus 213 ---------------~~~---------l~----------------------------------~~~~~----~~--v~~~ 228 (377)
.++ ++ .+.-. .+ |.|.
T Consensus 418 ~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~drVKVIf~ 497 (725)
T 3nb0_A 418 IRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIFH 497 (725)
T ss_dssp HHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTCSEEEEEC
T ss_pred hcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCCceeEEEe
Confidence 000 00 00000 01 3444
Q ss_pred -cccCch------hHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCC-------CeeEEeC
Q 017114 229 -GMLLGE------ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG-------KIGYLFN 294 (377)
Q Consensus 229 -g~~~~~------~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~-------~~g~~~~ 294 (377)
++++.. ++..+|+.||++|+||.+|+||++++||||||+|||+++.+|..+.+ .++ .+|+++.
T Consensus 498 P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V---~dg~~~~~~~~tG~lV~ 574 (725)
T 3nb0_A 498 PEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYM---EDLIETNQAKDYGIYIV 574 (725)
T ss_dssp CSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHHHHH---HTTSCHHHHHHTTEEEE
T ss_pred ccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChhhhh---hccccccCCCCceEEEe
Confidence 667665 58999999999999999999999999999999999999999999988 544 3688874
Q ss_pred ---CCCHHHHHHHHHHHhh-----CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Q 017114 295 ---PGDLDDCLSKLEPLLY-----NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWRK 352 (377)
Q Consensus 295 ---~~~~~~l~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~~~~~~ 352 (377)
+.++++++++|.+++. ++..+..+++++++.+++|+|+.++++++ .+|+.++.+...
T Consensus 575 ~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl-~~Ye~aL~~~~~ 639 (725)
T 3nb0_A 575 DRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYV-KARQLALRRGYP 639 (725)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHH-HHHHHHHHHHCH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhhccc
Confidence 4466666655555543 67888899999988888999999999999 699999866544
No 22
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.97 E-value=1.3e-30 Score=244.69 Aligned_cols=264 Identities=11% Similarity=0.068 Sum_probs=199.8
Q ss_pred hHHHHHHHHhcCCCEEEeCCCchh-HHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEe
Q 017114 44 SPRIISEVARFKPDIIHASSPGIM-VFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 122 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~~~-~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 122 (377)
...+.+.+++.+|||||.++.... ..... ++ ....|++++.|++.... . ... ..+..+|.+++
T Consensus 271 ~~~l~~~i~~~~~Div~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~-~---~~~----------~~~~~~d~~i~ 334 (568)
T 2vsy_A 271 HLATAKHIRHHGIDLLFDLRGWGGGGRPEV-FA-LRPAPVQVNWLAYPGTS-G---APW----------MDYVLGDAFAL 334 (568)
T ss_dssp HHHHHHHHHHTTCSEEEECSSCTTCSSCHH-HH-TCCSSEEEEESSSSSCC-C---CTT----------CCEEEECTTTS
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCcchHHH-Hh-cCCCceeEeeecCCccc-C---CCC----------ceEEEECCCcC
Confidence 467889999999999998653321 11112 22 23468888887643211 0 000 01235888999
Q ss_pred cChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC---
Q 017114 123 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--- 199 (377)
Q Consensus 123 ~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l--- 199 (377)
+|+...+ + .+++.++||.+......+.......+.++. .++..+++++|++.+ ||++.+++++..+
T Consensus 335 ~s~~~~~-----~---~~~i~~ipn~~~~~~~~~~~~~~~~r~~~~--~~~~~~v~~~g~~~~-K~~~~li~a~~~l~~~ 403 (568)
T 2vsy_A 335 PPALEPF-----Y---SEHVLRLQGAFQPSDTSRVVAEPPSRTQCG--LPEQGVVLCCFNNSY-KLNPQSMARMLAVLRE 403 (568)
T ss_dssp CTTTGGG-----C---SSEEEECSSCSCCCCTTCCCCCCCCTGGGT--CCTTSCEEEECCCGG-GCCHHHHHHHHHHHHH
T ss_pred CcccccC-----C---cceeEcCCCcCCCCCCCCCCCCCCCccccC--CCCCCEEEEeCCccc-cCCHHHHHHHHHHHHh
Confidence 9986543 2 268999999654332111111112233332 234456779999999 9999999998765
Q ss_pred -CCceEEEEe-cCccHHHHHHhhcC-----CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEE-
Q 017114 200 -PEARIAFIG-DGPYREELEKMFTG-----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG- 271 (377)
Q Consensus 200 -~~~~l~i~G-~g~~~~~l~~~~~~-----~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~- 271 (377)
|+++|+|+| +|+..+.+++.+.+ .+|.|.|+++++++..+|+.||++|+||.+ ++|++++|||+||+|||+
T Consensus 404 ~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~-~~g~~~lEAma~G~Pvv~~ 482 (568)
T 2vsy_A 404 VPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPY-NAHTTASDALWTGCPVLTT 482 (568)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBC
T ss_pred CCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCC-CCcHHHHHHHhCCCCEEec
Confidence 789999999 88888888776653 469999999999999999999999999999 999999999999999999
Q ss_pred ------ecCC-------CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH---HhcCHHHHH
Q 017114 272 ------VRAG-------GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM---EKYDWRAAT 335 (377)
Q Consensus 272 ------~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~---~~~s~~~~~ 335 (377)
++.+ +.++++ .+ |++++++++.++++|++.++++++++++.+ +.|+|+.++
T Consensus 483 ~g~~~~s~~~~~~l~~~g~~e~v---~~----------~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 549 (568)
T 2vsy_A 483 PGETFAARVAGSLNHHLGLDEMN---VA----------DDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFA 549 (568)
T ss_dssp CCSSGGGSHHHHHHHHHTCGGGB---CS----------SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHH
T ss_pred cCCCchHHHHHHHHHHCCChhhh---cC----------CHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 9999 888887 33 899999999999999999999999999998 579999999
Q ss_pred HHHHHHHHHHHHHH
Q 017114 336 RTIRNEQYNAAIWF 349 (377)
Q Consensus 336 ~~~~~~ly~~~~~~ 349 (377)
+++. .+|+++++.
T Consensus 550 ~~~~-~~y~~~~~~ 562 (568)
T 2vsy_A 550 DDFG-ALLQALARR 562 (568)
T ss_dssp HHHH-HHHHHHHHT
T ss_pred HHHH-HHHHHHHHH
Confidence 9999 799998764
No 23
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.97 E-value=2.9e-29 Score=223.98 Aligned_cols=276 Identities=14% Similarity=0.090 Sum_probs=208.8
Q ss_pred CCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHh
Q 017114 55 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 134 (377)
Q Consensus 55 ~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 134 (377)
.-|+|++|+++.+.++.++-.+..+.++.+.+|..+|...-..... ...+.-.-..+-.+|.|.+.+......|.+.
T Consensus 149 ~~D~VwVhDYhL~llp~~lR~~~~~~~igfFlHiPfPs~e~f~~Lp---~~~r~ell~gll~~DligF~t~~y~~~Fl~~ 225 (496)
T 3t5t_A 149 ADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILP---KEIRTGILHGMLPATTIGFFADRWCRNFLES 225 (496)
T ss_dssp SSCEEEEESGGGTTHHHHHHHHCTTSCEEEECCSCCCCHHHHTTSC---HHHHHHHHHHHTTSSEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCccHhHHHHHHHhhCCCCeEEEEEcCCCCCHHHHhhCc---HhHHHHHHHHHHhCCEEEEecHHHHHHHHHH
Confidence 4589999999888888776666678999999999876532111111 0011122234457999999999888876553
Q ss_pred ----c-cc-------------CCCcEEEecCCCCCCCCCCccC--chHHHHHhhCCCCCCCeEEEeecccccccHHHHHH
Q 017114 135 ----R-VT-------------AANKIRIWKKGVDSESFHPRFR--SSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKR 194 (377)
Q Consensus 135 ----~-~~-------------~~~~i~~i~~gv~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~ 194 (377)
. +. ...++.++|+|+|.+.|.+... ....+.++. ++++|+++||+++.||++.+++
T Consensus 226 ~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~~~lr~~~~----~~~lIl~VgRLd~~KGi~~lL~ 301 (496)
T 3t5t_A 226 VADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWAD----GHRLVVHSGRTDPIKNAERAVR 301 (496)
T ss_dssp HHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCCTTHHHHHT----TSEEEEEEEESSGGGCHHHHHH
T ss_pred HHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHHHHHHHHhC----CceEEEEcccCccccCHHHHHH
Confidence 1 10 1136789999999998876532 133444442 6789999999999999999999
Q ss_pred HHHhC----CC---ceEEEEec-----CccH----HHHHHhhcCC-------CEEEccccCchhHHHHHhcCCEEEeccC
Q 017114 195 VMDRL----PE---ARIAFIGD-----GPYR----EELEKMFTGM-------PAVFTGMLLGEELSQAYASGDVFVMPSE 251 (377)
Q Consensus 195 a~~~l----~~---~~l~i~G~-----g~~~----~~l~~~~~~~-------~v~~~g~~~~~~~~~~~~~adi~v~ps~ 251 (377)
|+ .+ |+ +.|+++|. ++.. +++++++.+. .|.|.|.++.+++..+|+.||++++||.
T Consensus 302 Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g~v~~~el~aly~~ADv~vv~Sl 380 (496)
T 3t5t_A 302 AF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDNDNDVNHTIACFRRADLLIFNST 380 (496)
T ss_dssp HH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCHHHHHHHHHHCSEEEECCS
T ss_pred HH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCcCEEEeCCCCHHHHHHHHHhccEEEECcc
Confidence 99 54 55 45777762 3333 3333333221 5899999999999999999999999999
Q ss_pred CcccchHHHHHHhcC---CCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHH
Q 017114 252 SETLGLVVLEAMSSG---IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN-QELRETMGQAARQEME 327 (377)
Q Consensus 252 ~e~~~~~~~Ea~a~G---~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~~~ 327 (377)
.||||++++|||||| .|+|+|+.+|..+.+ +.+|++++|.|+++++++|.+++++ +++++.+.++.++.+.
T Consensus 381 rEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l-----~~~allVnP~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~V~ 455 (496)
T 3t5t_A 381 VDGQNLSTFEAPLVNERDADVILSETCGAAEVL-----GEYCRSVNPFDLVEQAEAISAALAAGPRQRAEAAARRRDAAR 455 (496)
T ss_dssp SBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHH-----GGGSEEECTTBHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred cccCChhHHHHHHhCCCCCCEEEeCCCCCHHHh-----CCCEEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 999999999999997 899999999888887 3478999999999999999999985 5788888889999999
Q ss_pred hcCHHHHHHHHHHHHH
Q 017114 328 KYDWRAATRTIRNEQY 343 (377)
Q Consensus 328 ~~s~~~~~~~~~~~ly 343 (377)
+++++..++.+++.+-
T Consensus 456 ~~d~~~W~~~fl~~L~ 471 (496)
T 3t5t_A 456 PWTLEAWVQAQLDGLA 471 (496)
T ss_dssp TCBHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHh
Confidence 9999999999996553
No 24
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.97 E-value=1.3e-29 Score=205.24 Aligned_cols=180 Identities=23% Similarity=0.335 Sum_probs=155.3
Q ss_pred ecCCCCCCCCC--CccC-----chHHHHHhhCCCCCCCeEEEeeccc-ccccHHHHHHHHHhC------CCceEEEEecC
Q 017114 145 WKKGVDSESFH--PRFR-----SSEMRWRLSNGEPDKPLIVHVGRLG-VEKSLDFLKRVMDRL------PEARIAFIGDG 210 (377)
Q Consensus 145 i~~gv~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~i~~~G~~~-~~k~~~~l~~a~~~l------~~~~l~i~G~g 210 (377)
||||+|.+.|. +... ....+.++.. ++..+++|+|++. +.||++.++++++.+ ++++++|+|.+
T Consensus 2 ipngvd~~~f~~~~~~~~~~~~~~~~r~~~~~--~~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~ 79 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGSRDERKKSLLSKFGM--DEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG 79 (200)
T ss_dssp ---CCCTTTSSGGGSCSCHHHHHHHHHHHTTC--CSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCB
T ss_pred CCCccChhhccccccccchhhHHHHHHHHcCC--CCCCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 69999999998 6643 3445555533 4556999999999 999999999999877 47999999998
Q ss_pred c--cHHHHHHhhcCC-CEEE-ccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCC
Q 017114 211 P--YREELEKMFTGM-PAVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD 286 (377)
Q Consensus 211 ~--~~~~l~~~~~~~-~v~~-~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~ 286 (377)
+ ..+.+++++.+. +|.+ .|+++++++..+|+.||++|+||..|++|++++|||++|+|||+++.++..+++ +
T Consensus 80 ~~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~----~ 155 (200)
T 2bfw_A 80 DPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII----T 155 (200)
T ss_dssp CHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHHHHHC----C
T ss_pred ChHHHHHHHHHHHhcCCEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCChHHHc----C
Confidence 8 777787776654 7999 999999999999999999999999999999999999999999999999998887 4
Q ss_pred CCeeEEeCCCCHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Q 017114 287 GKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEKYD 330 (377)
Q Consensus 287 ~~~g~~~~~~~~~~l~~~i~~~~~-~~~~~~~~~~~~~~~~~~~s 330 (377)
+.+|+++++.|+++++++|.++++ |++.++++++++++.+++||
T Consensus 156 ~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~fs 200 (200)
T 2bfw_A 156 NETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFS 200 (200)
T ss_dssp TTTCEEECTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCceEEecCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999 99999999999999885565
No 25
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.97 E-value=1.2e-29 Score=198.98 Aligned_cols=158 Identities=23% Similarity=0.336 Sum_probs=137.5
Q ss_pred CCeEEEeecccccccHHHHHHHHHhC---CCceEEEEecCccHHHHHHhhcCC--CEEEccccCchhHHHHHhcCCEEEe
Q 017114 174 KPLIVHVGRLGVEKSLDFLKRVMDRL---PEARIAFIGDGPYREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVM 248 (377)
Q Consensus 174 ~~~i~~~G~~~~~k~~~~l~~a~~~l---~~~~l~i~G~g~~~~~l~~~~~~~--~v~~~g~~~~~~~~~~~~~adi~v~ 248 (377)
+++|+|+|++.+.||++.++++++.+ ++++++++|+|+..+.+++++.+. ++.+ |+++++++..+|+.||++|+
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~v~ 80 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGPDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLYVH 80 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCSTTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEEEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEEEE
Confidence 46899999999999999999999988 479999999999888888877643 6888 99999999999999999999
Q ss_pred ccCCcccchHHHHHHhcCC-CeEE-ecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 017114 249 PSESETLGLVVLEAMSSGI-PVVG-VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM 326 (377)
Q Consensus 249 ps~~e~~~~~~~Ea~a~G~-PvI~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 326 (377)
||..|++|++++|||++|+ |||+ ++.++..+++ .++ +.++++.|+++++++|.++++|++.++++++++++.+
T Consensus 81 ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~---~~~--~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 155 (166)
T 3qhp_A 81 AANVESEAIACLEAISVGIVPVIANSPLSATRQFA---LDE--RSLFEPNNAKDLSAKIDWWLENKLERERMQNEYAKSA 155 (166)
T ss_dssp CCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGC---SSG--GGEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhc---cCC--ceEEcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999999999999999998 9999 5678889988 554 3478889999999999999999999999999999999
Q ss_pred HhcCHHHHHHH
Q 017114 327 EKYDWRAATRT 337 (377)
Q Consensus 327 ~~~s~~~~~~~ 337 (377)
++|+|+.++++
T Consensus 156 ~~~s~~~~~~~ 166 (166)
T 3qhp_A 156 LNYTLENSVIQ 166 (166)
T ss_dssp HHHC-------
T ss_pred HHCChhhhhcC
Confidence 99999998764
No 26
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.96 E-value=1.5e-28 Score=212.14 Aligned_cols=262 Identities=15% Similarity=0.088 Sum_probs=194.5
Q ss_pred HHHHHHHh-cCCCEEEeCCCchhH--HHHHHHHH--hhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCee
Q 017114 46 RIISEVAR-FKPDIIHASSPGIMV--FGALIIAK--LLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 120 (377)
Q Consensus 46 ~~~~~i~~-~~pDii~~~~~~~~~--~~~~~~~~--~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 120 (377)
.+..++.. .++|+|+++.|.... +...++.+ ..++|+++.+||.+|..... .......++++++.||.+
T Consensus 64 ~~~~~~~~~~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~~~~------~~~~~~~E~~~y~~aD~I 137 (339)
T 3rhz_A 64 RLDGIVAGLRHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFSG------NFYLMDRTIAYYNKADVV 137 (339)
T ss_dssp HHHHHTTTCCTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHHCGG------GGGGHHHHHHHHTTCSEE
T ss_pred HHHHHHhcCCCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhhCcc------chhhHHHHHHHHHHCCEE
Confidence 33344444 378999998876532 22233333 45899999999998765432 122334799999999999
Q ss_pred EecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCC
Q 017114 121 LVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP 200 (377)
Q Consensus 121 i~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~ 200 (377)
++.|+.+++.+.+.+. +..++.++++. |.. .+.... ...+++.++|+|+++....++.+ .+
T Consensus 138 i~~S~~~~~~l~~~G~-~~~ki~~~~~~-~~~--~~~~~~---------~~~~~~~i~yaG~l~k~~~L~~l------~~ 198 (339)
T 3rhz_A 138 VAPSQKMIDKLRDFGM-NVSKTVVQGMW-DHP--TQAPMF---------PAGLKREIHFPGNPERFSFVKEW------KY 198 (339)
T ss_dssp EESCHHHHHHHHHTTC-CCSEEEECCSC-CCC--CCCCCC---------CCEEEEEEEECSCTTTCGGGGGC------CC
T ss_pred EECCHHHHHHHHHcCC-CcCceeecCCC-Ccc--Cccccc---------ccCCCcEEEEeCCcchhhHHHhC------CC
Confidence 9999999999998764 44677555442 211 110000 12355789999999854332221 27
Q ss_pred CceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCC-------cccchHHHHHHhcCCCeEEec
Q 017114 201 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES-------ETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 201 ~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~-------e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
+++|+|+|+|+.. . .. ||+|+|++|.+|++.+++++|+.++.... ..+|++++||||||+|||+++
T Consensus 199 ~~~f~ivG~G~~~----~--l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~ 271 (339)
T 3rhz_A 199 DIPLKVYTWQNVE----L--PQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQE 271 (339)
T ss_dssp SSCEEEEESCCCC----C--CT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEET
T ss_pred CCeEEEEeCCccc----C--cC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEcc
Confidence 8999999999864 1 23 89999999999999999999998886211 246999999999999999999
Q ss_pred CCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 017114 274 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 346 (377)
Q Consensus 274 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~ 346 (377)
.++..+++ +++++|++++ +.++++++|..+ +++.+++|++++++..+++++..+.++.+...+.++
T Consensus 272 ~~~~~~~v---~~~~~G~~~~--~~~e~~~~i~~l--~~~~~~~m~~na~~~a~~~~~~~f~k~~l~~~~~~~ 337 (339)
T 3rhz_A 272 GIANQELI---ENNGLGWIVK--DVEEAIMKVKNV--NEDEYIELVKNVRSFNPILRKGFFTRRLLTESVFQA 337 (339)
T ss_dssp TCTTTHHH---HHHTCEEEES--SHHHHHHHHHHC--CHHHHHHHHHHHHHHTHHHHTTHHHHHHHHHHHHHH
T ss_pred ChhHHHHH---HhCCeEEEeC--CHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 99999999 8888999997 789999999886 567789999999999888888888888776555544
No 27
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.96 E-value=1e-28 Score=219.91 Aligned_cols=277 Identities=17% Similarity=0.137 Sum_probs=196.4
Q ss_pred hHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEec
Q 017114 44 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 123 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 123 (377)
...+.+.+++.+||+||+|+.....+.+.++++..++|++...++... + . ....+ ......+++.+.+|.+++.
T Consensus 80 ~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~-~-~-~~~~~---~~~~~~~~~~~~~~~~~~~ 153 (376)
T 1v4v_A 80 LPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRS-G-N-LKEPF---PEEANRRLTDVLTDLDFAP 153 (376)
T ss_dssp HHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCC-S-C-TTSST---THHHHHHHHHHHCSEEEES
T ss_pred HHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHhCCCEEEEeCCCcc-c-c-ccCCC---chHHHHHHHHHHhceeeCC
Confidence 457888899999999999976555555566788899998744333211 1 0 00001 1123345667789999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEecCCC-CCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC---
Q 017114 124 SVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--- 199 (377)
Q Consensus 124 s~~~~~~~~~~~~~~~~~i~~i~~gv-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l--- 199 (377)
|+..++.+.+.+ .+.+++.+++|+. |...+.+. ....+..+ .+++++++++|++...||++.+++|++.+
T Consensus 154 s~~~~~~l~~~g-~~~~ki~vi~n~~~d~~~~~~~--~~~~~~~~---~~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~ 227 (376)
T 1v4v_A 154 TPLAKANLLKEG-KREEGILVTGQTGVDAVLLAAK--LGRLPEGL---PEGPYVTVTMHRRENWPLLSDLAQALKRVAEA 227 (376)
T ss_dssp SHHHHHHHHTTT-CCGGGEEECCCHHHHHHHHHHH--HCCCCTTC---CSSCEEEECCCCGGGGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC-CCcceEEEECCchHHHHhhhhh--hhHHHHhc---CCCCEEEEEeCcccchHHHHHHHHHHHHHHhh
Confidence 999999998764 3567899999875 32111100 00001111 13455677899988888999999999765
Q ss_pred -CCceEEEE-ecCc-cHHHHHHhhcC-CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEe-cC
Q 017114 200 -PEARIAFI-GDGP-YREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV-RA 274 (377)
Q Consensus 200 -~~~~l~i~-G~g~-~~~~l~~~~~~-~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~-~~ 274 (377)
+++++++. |+++ ..+.+++++.. .+|.+.|.++..++..+|+.||++|.|| + | .++|||+||+|||++ +.
T Consensus 228 ~~~~~lv~~~g~~~~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ad~~v~~S--~--g-~~lEA~a~G~PvI~~~~~ 302 (376)
T 1v4v_A 228 FPHLTFVYPVHLNPVVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDS--G--G-LQEEGAALGVPVVVLRNV 302 (376)
T ss_dssp CTTSEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEEEEEESC--H--H-HHHHHHHTTCCEEECSSS
T ss_pred CCCeEEEEECCCCHHHHHHHHHHhccCCCEEEECCCCHHHHHHHHHhCcEEEECC--c--C-HHHHHHHcCCCEEeccCC
Confidence 67888886 7665 46677766543 4899999888889999999999999998 2 3 388999999999987 46
Q ss_pred CCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 017114 275 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 347 (377)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~ 347 (377)
++..+++ .+ ++|++++ .|+++++++|.++++|++.+++|++++ +.|.+...++++. .++++++
T Consensus 303 ~~~~~~~---~~-g~g~lv~-~d~~~la~~i~~ll~d~~~~~~~~~~~----~~~~~~~~~~~i~-~~i~~~~ 365 (376)
T 1v4v_A 303 TERPEGL---KA-GILKLAG-TDPEGVYRVVKGLLENPEELSRMRKAK----NPYGDGKAGLMVA-RGVAWRL 365 (376)
T ss_dssp CSCHHHH---HH-TSEEECC-SCHHHHHHHHHHHHTCHHHHHHHHHSC----CSSCCSCHHHHHH-HHHHHHT
T ss_pred Ccchhhh---cC-CceEECC-CCHHHHHHHHHHHHhChHhhhhhcccC----CCCCCChHHHHHH-HHHHHHh
Confidence 7888876 43 3788885 499999999999999999988888643 3566666677776 4555554
No 28
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.95 E-value=2.3e-27 Score=187.59 Aligned_cols=140 Identities=24% Similarity=0.395 Sum_probs=127.8
Q ss_pred CCCCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhc------CCCEEEccccCchhHHHHHhcCC
Q 017114 171 EPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT------GMPAVFTGMLLGEELSQAYASGD 244 (377)
Q Consensus 171 ~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~------~~~v~~~g~~~~~~~~~~~~~ad 244 (377)
+.++++|+|+|++.+.||++.++++++.+++++++++|.++..+.+++.+. ..+|.+.|+++++++..+|+.||
T Consensus 20 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ad 99 (177)
T 2f9f_A 20 KCYGDFWLSVNRIYPEKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRCK 99 (177)
T ss_dssp CCCCSCEEEECCSSGGGTHHHHHHHHHHCTTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHHCS
T ss_pred CCCCCEEEEEeccccccCHHHHHHHHHhCCCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHhCC
Confidence 456788999999999999999999999999999999998876555555544 34899999999999999999999
Q ss_pred EEEeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHH
Q 017114 245 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQEL 314 (377)
Q Consensus 245 i~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~ 314 (377)
++|+|+..|++|++++|||+||+|||+++.++..+++ .++.+|+++ +.|+++++++|.++++|++.
T Consensus 100 i~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i---~~~~~g~~~-~~d~~~l~~~i~~l~~~~~~ 165 (177)
T 2f9f_A 100 GLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETV---INEKTGYLV-NADVNEIIDAMKKVSKNPDK 165 (177)
T ss_dssp EEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHC---CBTTTEEEE-CSCHHHHHHHHHHHHHCTTT
T ss_pred EEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHh---cCCCccEEe-CCCHHHHHHHHHHHHhCHHH
Confidence 9999999999999999999999999999999999999 788899999 88999999999999998875
No 29
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.94 E-value=2.2e-26 Score=203.51 Aligned_cols=243 Identities=14% Similarity=0.116 Sum_probs=177.9
Q ss_pred chHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEe
Q 017114 43 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 122 (377)
Q Consensus 43 ~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 122 (377)
....+.+.+++.+||+||++....+.. + +....+ |+++..+.... . .+.+.+++.+|.+++
T Consensus 99 ~~~~l~~~l~~~~pDiv~~~~~~~~~~--~-~~~~~~-p~~~~~~~~~~--------~-------~~~~~~~~~~d~ii~ 159 (374)
T 2xci_A 99 NPFSVKRFEELSKPKALIVVEREFWPS--L-IIFTKV-PKILVNAYAKG--------S-------LIEKILSKKFDLIIM 159 (374)
T ss_dssp SHHHHHHHHHHHCCSEEEEESCCCCHH--H-HHHCCS-CEEEEEECCCC--------C-------HHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEECccCcHH--H-HHHHhC-CEEEEEeecCc--------h-------HHHHHHHHhCCEEEE
Confidence 456788999999999999865432221 1 122223 87665443211 0 155678899999999
Q ss_pred cChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhC---
Q 017114 123 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--- 199 (377)
Q Consensus 123 ~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l--- 199 (377)
.|+..++.+.+.+. + ++.+++|+. |.+..... . .. ..+++++.|+ ..||++.+++|++.+
T Consensus 160 ~S~~~~~~l~~~g~-~--ki~vi~n~~----f~~~~~~~---~----~l-~~~vi~~~~~--~~k~~~~ll~A~~~l~~~ 222 (374)
T 2xci_A 160 RTQEDVEKFKTFGA-K--RVFSCGNLK----FICQKGKG---I----KL-KGEFIVAGSI--HTGEVEIILKAFKEIKKT 222 (374)
T ss_dssp SCHHHHHHHHTTTC-C--SEEECCCGG----GCCCCCSC---C----CC-SSCEEEEEEE--CGGGHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcCC-C--eEEEcCCCc----cCCCcChh---h----hh-cCCEEEEEeC--CCchHHHHHHHHHHHHhh
Confidence 99999999988743 3 899999973 11111100 0 01 1245666654 468999999999865
Q ss_pred -CCceEEEEecCccH-HHHHHhhcCC------------CEEEccccCchhHHHHHhcCCEEEeccCC-cccchHHHHHHh
Q 017114 200 -PEARIAFIGDGPYR-EELEKMFTGM------------PAVFTGMLLGEELSQAYASGDVFVMPSES-ETLGLVVLEAMS 264 (377)
Q Consensus 200 -~~~~l~i~G~g~~~-~~l~~~~~~~------------~v~~~g~~~~~~~~~~~~~adi~v~ps~~-e~~~~~~~Ea~a 264 (377)
|+++++|+|+|+.. +.+++++.+. +|.+.|.. +|+..+|+.||++++|+.. +++|.+++||||
T Consensus 223 ~p~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~--~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA 300 (374)
T 2xci_A 223 YSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRF--GILKELYPVGKIAIVGGTFVNIGGHNLLEPTC 300 (374)
T ss_dssp CTTCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSS--SCHHHHGGGEEEEEECSSSSSSCCCCCHHHHT
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCH--HHHHHHHHhCCEEEECCcccCCCCcCHHHHHH
Confidence 68999999999876 5777666533 35666655 8999999999998887654 678999999999
Q ss_pred cCCCeEEe-cCCCCCccccccCC-CCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 017114 265 SGIPVVGV-RAGGIPDIIPEDQD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME 327 (377)
Q Consensus 265 ~G~PvI~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 327 (377)
||+|||++ +.++.++++ .+ ..+|.++.+.|+++|+++|.++++| +.+++|++++++.++
T Consensus 301 ~G~PVI~~~~~~~~~e~~---~~~~~~G~l~~~~d~~~La~ai~~ll~d-~~r~~mg~~ar~~~~ 361 (374)
T 2xci_A 301 WGIPVIYGPYTHKVNDLK---EFLEKEGAGFEVKNETELVTKLTELLSV-KKEIKVEEKSREIKG 361 (374)
T ss_dssp TTCCEEECSCCTTSHHHH---HHHHHTTCEEECCSHHHHHHHHHHHHHS-CCCCCHHHHHHHHHH
T ss_pred hCCCEEECCCccChHHHH---HHHHHCCCEEEeCCHHHHHHHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 99999975 678888877 43 2357777888999999999999999 999999999999875
No 30
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.92 E-value=5.9e-23 Score=180.91 Aligned_cols=299 Identities=18% Similarity=0.133 Sum_probs=192.1
Q ss_pred CCcEEEEEeeCCCCCc---cccCceeecccCCCCCc---cccc---cccccchHHHHHHHHhcCCCEEEeCCCchhHHHH
Q 017114 1 MGDEVMVVTTHEGVPQ---EFYGAKLIGSRSFPCPW---YQKV---PLSLALSPRIISEVARFKPDIIHASSPGIMVFGA 71 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~ 71 (377)
+||+|+++++..+... ...++++..++.-.++. ...+ ...+....++.+++++.+||+|++++.. ...+.
T Consensus 29 ~g~~V~~vg~~~g~e~~~v~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~PDvVi~~g~~-~s~p~ 107 (365)
T 3s2u_A 29 RGYAVHWLGTPRGIENDLVPKAGLPLHLIQVSGLRGKGLKSLVKAPLELLKSLFQALRVIRQLRPVCVLGLGGY-VTGPG 107 (365)
T ss_dssp TTCEEEEEECSSSTHHHHTGGGTCCEEECC--------------CHHHHHHHHHHHHHHHHHHCCSEEEECSSS-THHHH
T ss_pred CCCEEEEEECCchHhhchhhhcCCcEEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCc-chHHH
Confidence 5999999987665321 12233433333221111 1111 1112234567788999999999998754 34555
Q ss_pred HHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCC
Q 017114 72 LIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDS 151 (377)
Q Consensus 72 ~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~ 151 (377)
.+.++..++|++++..+..+. ...+++.+.++.++...+.. + ....++.++.|++..
T Consensus 108 ~laA~~~~iP~vihe~n~~~G---------------~~nr~l~~~a~~v~~~~~~~-------~-~~~~k~~~~g~pvr~ 164 (365)
T 3s2u_A 108 GLAARLNGVPLVIHEQNAVAG---------------TANRSLAPIARRVCEAFPDT-------F-PASDKRLTTGNPVRG 164 (365)
T ss_dssp HHHHHHTTCCEEEEECSSSCC---------------HHHHHHGGGCSEEEESSTTS-------S-CC---CEECCCCCCG
T ss_pred HHHHHHcCCCEEEEecchhhh---------------hHHHhhccccceeeeccccc-------c-cCcCcEEEECCCCch
Confidence 668899999999865554321 23456778899988766542 1 134567788888876
Q ss_pred CCCCCccCchHHHHHhhCCCCCCCeEEEeecccccccHHHHHHHHHhCC---CceEEE-EecCccHHHHHHhhc--CCCE
Q 017114 152 ESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP---EARIAF-IGDGPYREELEKMFT--GMPA 225 (377)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~---~~~l~i-~G~g~~~~~l~~~~~--~~~v 225 (377)
+.+...... .........++++.|+.+..+..+.+.+++..++ +++++. +|.+ ..+.+.+... ..++
T Consensus 165 ~~~~~~~~~------~~~~~~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~~~~~vi~~~G~~-~~~~~~~~~~~~~~~~ 237 (365)
T 3s2u_A 165 ELFLDAHAR------APLTGRRVNLLVLGGSLGAEPLNKLLPEALAQVPLEIRPAIRHQAGRQ-HAEITAERYRTVAVEA 237 (365)
T ss_dssp GGCCCTTSS------CCCTTSCCEEEECCTTTTCSHHHHHHHHHHHTSCTTTCCEEEEECCTT-THHHHHHHHHHTTCCC
T ss_pred hhccchhhh------cccCCCCcEEEEECCcCCccccchhhHHHHHhcccccceEEEEecCcc-ccccccceeccccccc
Confidence 655433211 1112223345556677887778888899998884 344443 4544 3344444333 3368
Q ss_pred EEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCC--------CccccccCCCCeeEEeCCC-
Q 017114 226 VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI--------PDIIPEDQDGKIGYLFNPG- 296 (377)
Q Consensus 226 ~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~--------~~~~~~~~~~~~g~~~~~~- 296 (377)
.+.+++ +++.++|+.||++|..+ .++++.|++++|+|+|..+.+.. .+.+ .+.+.|.+++..
T Consensus 238 ~v~~f~--~dm~~~l~~aDlvI~ra----G~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~l---~~~G~a~~l~~~~ 308 (365)
T 3s2u_A 238 DVAPFI--SDMAAAYAWADLVICRA----GALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEFL---VRSGAGRLLPQKS 308 (365)
T ss_dssp EEESCC--SCHHHHHHHCSEEEECC----CHHHHHHHHHHTCCEEECC-----CCHHHHHHHHH---HTTTSEEECCTTT
T ss_pred ccccch--hhhhhhhccceEEEecC----CcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHHH---HHCCCEEEeecCC
Confidence 889998 78999999999999543 37899999999999998766532 2345 566678888754
Q ss_pred -CHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 297 -DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 297 -~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
+++.|+++|.++++|++.+++|++++++..+....+.+++.++
T Consensus 309 ~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~~~~~aa~~ia~~i~ 352 (365)
T 3s2u_A 309 TGAAELAAQLSEVLMHPETLRSMADQARSLAKPEATRTVVDACL 352 (365)
T ss_dssp CCHHHHHHHHHHHHHCTHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 5899999999999999999999999988766556666666555
No 31
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.91 E-value=4.5e-24 Score=190.07 Aligned_cols=278 Identities=15% Similarity=0.118 Sum_probs=189.9
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCee
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 120 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i 120 (377)
.....++.+.+++.+||+|++++.....+++.+.++..++|++....+.. . ...+ .. ..-.....++.+.+|.+
T Consensus 100 ~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~aglr-s-~~~~-~~---~p~~~~r~~~~~~a~~~ 173 (403)
T 3ot5_A 100 SRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGLR-T-WNKY-SP---FPEEMNRQLTGVMADIH 173 (403)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCCC-C-SCTT-SS---TTHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCcc-c-cccc-cC---CcHHHHHHHHHHhcCEE
Confidence 44567888999999999999998766666666788899999764322210 0 0000 00 01112334456679999
Q ss_pred EecChhHHHHHHHhcccCCCcEEEecCCC-CCCCCCCcc-CchHHHHHhhCCCCCCCeEEEeecccc-cccHHHHHHHHH
Q 017114 121 LVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRF-RSSEMRWRLSNGEPDKPLIVHVGRLGV-EKSLDFLKRVMD 197 (377)
Q Consensus 121 i~~s~~~~~~~~~~~~~~~~~i~~i~~gv-~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~G~~~~-~k~~~~l~~a~~ 197 (377)
++.++..++.+.+.+. +++++.+++|+. |...+.+.. .....+.++ .+++.++++.|+... .++++.++++++
T Consensus 174 ~~~se~~~~~l~~~Gi-~~~~i~vvGn~~~D~~~~~~~~~~~~~~~~~l---~~~~~vlv~~~r~~~~~~~l~~ll~a~~ 249 (403)
T 3ot5_A 174 FSPTKQAKENLLAEGK-DPATIFVTGNTAIDALKTTVQKDYHHPILENL---GDNRLILMTAHRRENLGEPMQGMFEAVR 249 (403)
T ss_dssp EESSHHHHHHHHHTTC-CGGGEEECCCHHHHHHHHHSCTTCCCHHHHSC---TTCEEEEECCCCHHHHTTHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHcCC-CcccEEEeCCchHHHHHhhhhhhcchHHHHhc---cCCCEEEEEeCcccccCcHHHHHHHHHH
Confidence 9999999999998764 678899999854 432221111 111222222 234445566666533 467888888887
Q ss_pred hC----CCceEEEE-ecCc-cHHHHHHhhc-CCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeE
Q 017114 198 RL----PEARIAFI-GDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 270 (377)
Q Consensus 198 ~l----~~~~l~i~-G~g~-~~~~l~~~~~-~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 270 (377)
.+ |++++++. |.++ ..+.+++... ..+|.+.+++++.++..+|+.||++|.+| |...+||+++|+|+|
T Consensus 250 ~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~v~l~~~l~~~~~~~l~~~ad~vv~~S-----Gg~~~EA~a~g~PvV 324 (403)
T 3ot5_A 250 EIVESREDTELVYPMHLNPAVREKAMAILGGHERIHLIEPLDAIDFHNFLRKSYLVFTDS-----GGVQEEAPGMGVPVL 324 (403)
T ss_dssp HHHHHCTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHEEEEEECC-----HHHHHHGGGTTCCEE
T ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHhCCCCCEEEeCCCCHHHHHHHHHhcCEEEECC-----ccHHHHHHHhCCCEE
Confidence 65 78888887 4443 3445555333 35899999998889999999999999877 444489999999999
Q ss_pred Ee-cCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 017114 271 GV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 338 (377)
Q Consensus 271 ~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 338 (377)
+. +.++.++.+ +.+ +++++.. |++++++++.++++|++.+++|++++..+....+.+.+++.+
T Consensus 325 ~~~~~~~~~e~v---~~g-~~~lv~~-d~~~l~~ai~~ll~~~~~~~~m~~~~~~~g~~~aa~rI~~~l 388 (403)
T 3ot5_A 325 VLRDTTERPEGI---EAG-TLKLIGT-NKENLIKEALDLLDNKESHDKMAQAANPYGDGFAANRILAAI 388 (403)
T ss_dssp ECCSSCSCHHHH---HHT-SEEECCS-CHHHHHHHHHHHHHCHHHHHHHHHSCCTTCCSCHHHHHHHHH
T ss_pred EecCCCcchhhe---eCC-cEEEcCC-CHHHHHHHHHHHHcCHHHHHHHHhhcCcccCCcHHHHHHHHH
Confidence 98 677777777 444 7788765 899999999999999999888876554432334444444433
No 32
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.91 E-value=6.5e-24 Score=188.85 Aligned_cols=266 Identities=15% Similarity=0.104 Sum_probs=183.8
Q ss_pred ccchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHH-HHhcCCe
Q 017114 41 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKF-LHRAADL 119 (377)
Q Consensus 41 ~~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~ 119 (377)
.....++.+++++.+||+|++++.....+++.+.++..++|++...++.. .+ .+.........+. +.+.+|.
T Consensus 97 ~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~r-s~------~~~~~~~~~~~r~~~~~~a~~ 169 (396)
T 3dzc_A 97 SKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGLR-TG------NIYSPWPEEGNRKLTAALTQY 169 (396)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCCC-CS------CTTSSTTHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCcc-cc------ccccCCcHHHHHHHHHHhcCE
Confidence 44567888999999999999998766666666788999999764333221 10 1100111123333 4678999
Q ss_pred eEecChhHHHHHHHhcccCCCcEEEecCCC-CCCCCCCcc--C----chHHHHHhh-CCCCCCCeEEEeeccc-ccccHH
Q 017114 120 TLVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRF--R----SSEMRWRLS-NGEPDKPLIVHVGRLG-VEKSLD 190 (377)
Q Consensus 120 ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv-~~~~~~~~~--~----~~~~~~~~~-~~~~~~~~i~~~G~~~-~~k~~~ 190 (377)
++++++..++.+.+.+. +++++.+++|++ |...+.+.. . ..+.+.++. ...+++.++++.++.. ..++++
T Consensus 170 ~~~~se~~~~~l~~~G~-~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~ 248 (396)
T 3dzc_A 170 HFAPTDTSRANLLQENY-NAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGGFE 248 (396)
T ss_dssp EEESSHHHHHHHHHTTC-CGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTHHH
T ss_pred EECCCHHHHHHHHHcCC-CcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchhHHH
Confidence 99999999999988754 667899999864 322211110 0 022233333 1122334444554533 347789
Q ss_pred HHHHHHHhC----CCceEEEE-ecCc-cHHHHHHhhc-CCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHH
Q 017114 191 FLKRVMDRL----PEARIAFI-GDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM 263 (377)
Q Consensus 191 ~l~~a~~~l----~~~~l~i~-G~g~-~~~~l~~~~~-~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~ 263 (377)
.+++|++.+ |++++++. |.++ ..+.+++... ..+|.+.++++..++..+|+.||++|.+| |+...||+
T Consensus 249 ~ll~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~~~~~~~v~~~~~lg~~~~~~l~~~ad~vv~~S-----Gg~~~EA~ 323 (396)
T 3dzc_A 249 RICQALITTAEQHPECQILYPVHLNPNVREPVNKLLKGVSNIVLIEPQQYLPFVYLMDRAHIILTDS-----GGIQEEAP 323 (396)
T ss_dssp HHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTTTCTTEEEECCCCHHHHHHHHHHCSEEEESC-----SGGGTTGG
T ss_pred HHHHHHHHHHHhCCCceEEEEeCCChHHHHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhcCEEEECC-----ccHHHHHH
Confidence 999998776 68888885 5554 3455555433 34799999998889999999999999888 23448999
Q ss_pred hcCCCeEEe-cCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 017114 264 SSGIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQ 324 (377)
Q Consensus 264 a~G~PvI~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 324 (377)
++|+|+|++ +.++.++.+ +.+ .++++.. |++++++++.++++|++.+++|++++..
T Consensus 324 a~G~PvV~~~~~~~~~e~v---~~G-~~~lv~~-d~~~l~~ai~~ll~d~~~~~~m~~~~~~ 380 (396)
T 3dzc_A 324 SLGKPVLVMRETTERPEAV---AAG-TVKLVGT-NQQQICDALSLLLTDPQAYQAMSQAHNP 380 (396)
T ss_dssp GGTCCEEECCSSCSCHHHH---HHT-SEEECTT-CHHHHHHHHHHHHHCHHHHHHHHTSCCT
T ss_pred HcCCCEEEccCCCcchHHH---HcC-ceEEcCC-CHHHHHHHHHHHHcCHHHHHHHhhccCC
Confidence 999999998 677777877 555 4577654 8999999999999999999888876543
No 33
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.89 E-value=1.5e-22 Score=182.33 Aligned_cols=266 Identities=12% Similarity=0.072 Sum_probs=176.0
Q ss_pred HHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHH----------
Q 017114 45 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLH---------- 114 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 114 (377)
..+.+.+++.+||+|+++.... .+..+++..|+|++.+.|+..... .........+.++..
T Consensus 120 ~~l~~~l~~~~pDvVv~~~~~~---~~~~aa~~~giP~v~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (412)
T 3otg_A 120 DELQPVIERLRPDLVVQEISNY---GAGLAALKAGIPTICHGVGRDTPD------DLTRSIEEEVRGLAQRLGLDLPPGR 190 (412)
T ss_dssp HHHHHHHHHHCCSEEEEETTCH---HHHHHHHHHTCCEEEECCSCCCCS------HHHHHHHHHHHHHHHHTTCCCCSSC
T ss_pred HHHHHHHHhcCCCEEEECchhh---HHHHHHHHcCCCEEEecccccCch------hhhHHHHHHHHHHHHHcCCCCCccc
Confidence 6788889999999999875432 244577889999999888754211 011111112222222
Q ss_pred --hcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHh--hCCCCCCCeEEEeecccccccHH
Q 017114 115 --RAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRL--SNGEPDKPLIVHVGRLGVEKSLD 190 (377)
Q Consensus 115 --~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~G~~~~~k~~~ 190 (377)
..+|.+++.++...+.+...... ....+.+.+.+... .. ..+ ....+.+.++++.|+.. .++.+
T Consensus 191 ~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~vlv~~G~~~-~~~~~ 258 (412)
T 3otg_A 191 IDGFGNPFIDIFPPSLQEPEFRARP--RRHELRPVPFAEQG-----DL----PAWLSSRDTARPLVYLTLGTSS-GGTVE 258 (412)
T ss_dssp CGGGGCCEEECSCGGGSCHHHHTCT--TEEECCCCCCCCCC-----CC----CGGGGGSCTTSCEEEEECTTTT-CSCHH
T ss_pred ccCCCCeEEeeCCHHhcCCcccCCC--CcceeeccCCCCCC-----CC----CCccccccCCCCEEEEEcCCCC-cCcHH
Confidence 35788888887766655543221 11111111111100 00 011 11233456778888885 55555
Q ss_pred HHHHHHHhC--CCceEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCC
Q 017114 191 FLKRVMDRL--PEARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI 267 (377)
Q Consensus 191 ~l~~a~~~l--~~~~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~ 267 (377)
.+.++++.+ .++++++++++.. .+.++.. ..+|.+.|++ ++..+|+.||++|.++ .+++++|||++|+
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~g~~~~~~~l~~~--~~~v~~~~~~---~~~~~l~~ad~~v~~~----g~~t~~Ea~a~G~ 329 (412)
T 3otg_A 259 VLRAAIDGLAGLDADVLVASGPSLDVSGLGEV--PANVRLESWV---PQAALLPHVDLVVHHG----GSGTTLGALGAGV 329 (412)
T ss_dssp HHHHHHHHHHTSSSEEEEECCSSCCCTTCCCC--CTTEEEESCC---CHHHHGGGCSEEEESC----CHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCChhhhccC--CCcEEEeCCC---CHHHHHhcCcEEEECC----chHHHHHHHHhCC
Confidence 555544443 2567766654432 3333221 3479999999 4889999999999665 3589999999999
Q ss_pred CeEEecCCC----CCccccccCCCCeeEEeCCC--CHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017114 268 PVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNE 341 (377)
Q Consensus 268 PvI~~~~~~----~~~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 341 (377)
|+|+.+.++ ..+.+ .+.+.|.++++. |+++|+++|.++++|++.++++++.+++..+.++++.+++.+. .
T Consensus 330 P~v~~p~~~~q~~~~~~v---~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 405 (412)
T 3otg_A 330 PQLSFPWAGDSFANAQAV---AQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAGARAVAAEIAAMPGPDEVVRLLP-G 405 (412)
T ss_dssp CEEECCCSTTHHHHHHHH---HHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSCCHHHHHTTHH-H
T ss_pred CEEecCCchhHHHHHHHH---HHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcCCCHHHHHHHHH-H
Confidence 999976653 45666 667789999876 8999999999999999999999999999888899999999887 4
Q ss_pred HHH
Q 017114 342 QYN 344 (377)
Q Consensus 342 ly~ 344 (377)
++.
T Consensus 406 l~~ 408 (412)
T 3otg_A 406 FAS 408 (412)
T ss_dssp HHC
T ss_pred Hhc
Confidence 654
No 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.87 E-value=1.8e-21 Score=176.14 Aligned_cols=277 Identities=13% Similarity=0.063 Sum_probs=172.9
Q ss_pred hHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCccc-ccccc-c---------ccchhhHHHHHHH
Q 017114 44 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVY-IPRYT-F---------SWLVKPMWLVIKF 112 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~-~~~~~-~---------~~~~~~~~~~~~~ 112 (377)
...+.+.+++.+||+|+++... +.+..+++..|+|++...++..... ..... . .........+.+.
T Consensus 93 ~~~l~~~l~~~~pD~Vi~d~~~---~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (430)
T 2iyf_A 93 LPQLADAYADDIPDLVLHDITS---YPARVLARRWGVPAVSLSPNLVAWKGYEEEVAEPMWREPRQTERGRAYYARFEAW 169 (430)
T ss_dssp HHHHHHHHTTSCCSEEEEETTC---HHHHHHHHHHTCCEEEEESSCCCCTTHHHHTHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCEEEECCcc---HHHHHHHHHcCCCEEEEecccccccccccccccchhhhhccchHHHHHHHHHHHH
Confidence 3456777888899999987542 2445577889999998876643110 00000 0 0000000111222
Q ss_pred ------------HHhcCCeeEecChhHHHHHHHhcccCCCc-EEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEE
Q 017114 113 ------------LHRAADLTLVPSVAIGKDLEAARVTAANK-IRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVH 179 (377)
Q Consensus 113 ------------~~~~~d~ii~~s~~~~~~~~~~~~~~~~~-i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 179 (377)
++..+|.+++.+....+..... .+ .+ +.+++++++.....+.... ...++..++++
T Consensus 170 ~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~-~~~v~~vG~~~~~~~~~~~~~~--------~~~~~~~v~v~ 238 (430)
T 2iyf_A 170 LKENGITEHPDTFASHPPRSLVLIPKALQPHADR--VD-EDVYTFVGACQGDRAEEGGWQR--------PAGAEKVVLVS 238 (430)
T ss_dssp HHHTTCCSCHHHHHHCCSSEEECSCGGGSTTGGG--SC-TTTEEECCCCC-----CCCCCC--------CTTCSEEEEEE
T ss_pred HHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCccc--CC-CccEEEeCCcCCCCCCCCCCcc--------ccCCCCeEEEE
Confidence 2224787888776544332111 12 24 6667665542110000000 01234467888
Q ss_pred eeccc--ccccHHHHHHHHHhCCCceE-EEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccc
Q 017114 180 VGRLG--VEKSLDFLKRVMDRLPEARI-AFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLG 256 (377)
Q Consensus 180 ~G~~~--~~k~~~~l~~a~~~l~~~~l-~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~ 256 (377)
+|++. ..+.+..++++++.++++++ +++|+++..+.++.+ ..+|.+.|++++. ++|+.||++|..+ ..
T Consensus 239 ~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~~~~l~~~--~~~v~~~~~~~~~---~~l~~ad~~v~~~----G~ 309 (430)
T 2iyf_A 239 LGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGEL--PDNVEVHDWVPQL---AILRQADLFVTHA----GA 309 (430)
T ss_dssp CTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---CGGGGCSC--CTTEEEESSCCHH---HHHTTCSEEEECC----CH
T ss_pred cCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCChHHhccC--CCCeEEEecCCHH---HHhhccCEEEECC----Cc
Confidence 99987 12335556666665567787 467877654433221 3479999999654 7899999998754 24
Q ss_pred hHHHHHHhcCCCeEEecCCC----CCccccccCCCCeeEEeCCC--CHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcC
Q 017114 257 LVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYD 330 (377)
Q Consensus 257 ~~~~Ea~a~G~PvI~~~~~~----~~~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s 330 (377)
++++|||++|+|+|+.+..+ ..+.+ .+.+.|+.++.. ++++++++|.++++|++.++++++.+++..+.++
T Consensus 310 ~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 386 (430)
T 2iyf_A 310 GGSQEGLATATPMIAVPQAVDQFGNADML---QGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGG 386 (430)
T ss_dssp HHHHHHHHTTCCEEECCCSHHHHHHHHHH---HHTTSEEECCCC-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCH
T ss_pred cHHHHHHHhCCCEEECCCccchHHHHHHH---HHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCc
Confidence 79999999999999997654 34455 556788988876 8899999999999999999999999988887889
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017114 331 WRAATRTIRNEQYNAAI 347 (377)
Q Consensus 331 ~~~~~~~~~~~ly~~~~ 347 (377)
++.+++.+. .++++..
T Consensus 387 ~~~~~~~i~-~~~~~~~ 402 (430)
T 2iyf_A 387 TRRAADLIE-AELPARH 402 (430)
T ss_dssp HHHHHHHHH-TTSCC--
T ss_pred HHHHHHHHH-HHhhccc
Confidence 999998887 5666554
No 35
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.83 E-value=1.7e-20 Score=167.99 Aligned_cols=261 Identities=13% Similarity=0.090 Sum_probs=153.2
Q ss_pred HHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHh-------cC
Q 017114 45 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHR-------AA 117 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 117 (377)
..+.+.+++.+||+|+++... +.+.++++..|+|++...|+..... . ........+.....+ ..
T Consensus 113 ~~l~~~~~~~~pDlVv~d~~~---~~~~~~a~~~giP~v~~~~~~~~~~--~----~~~~~~~~l~~~~~~~~~~~~~~~ 183 (398)
T 4fzr_A 113 DEALALAERWKPDLVLTETYS---LTGPLVAATLGIPWIEQSIRLASPE--L----IKSAGVGELAPELAELGLTDFPDP 183 (398)
T ss_dssp HHHHHHHHHHCCSEEEEETTC---THHHHHHHHHTCCEEEECCSSCCCH--H----HHHHHHHHTHHHHHTTTCSSCCCC
T ss_pred HHHHHHHHhCCCCEEEECccc---cHHHHHHHhhCCCEEEeccCCCCch--h----hhHHHHHHHHHHHHHcCCCCCCCC
Confidence 467788889999999986532 3345577889999998887753211 0 000111111111111 11
Q ss_pred CeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccc----------cc
Q 017114 118 DLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV----------EK 187 (377)
Q Consensus 118 d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~----------~k 187 (377)
+..+............. ....+.+++... .............+.+.+++++|++.. .+
T Consensus 184 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~ 251 (398)
T 4fzr_A 184 LLSIDVCPPSMEAQPKP---GTTKMRYVPYNG---------RNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLS 251 (398)
T ss_dssp SEEEECSCGGGC----C---CCEECCCCCCCC---------SSCCCCHHHHSCCSSCEEECC----------------CC
T ss_pred CeEEEeCChhhCCCCCC---CCCCeeeeCCCC---------CCCCCchhhhcCCCCCEEEEEccCcccccccccccchHH
Confidence 33333322211111000 001111111100 000000111112245567778898854 44
Q ss_pred cHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCC
Q 017114 188 SLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI 267 (377)
Q Consensus 188 ~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~ 267 (377)
.++.+++++..+ ++++++++++...+.+... ..+|.+.|+++ +..+|..||++|. .+.+++++|||++|+
T Consensus 252 ~~~~~~~al~~~-~~~~v~~~~~~~~~~l~~~--~~~v~~~~~~~---~~~ll~~ad~~v~----~gG~~t~~Ea~~~G~ 321 (398)
T 4fzr_A 252 LLQALSQELPKL-GFEVVVAVSDKLAQTLQPL--PEGVLAAGQFP---LSAIMPACDVVVH----HGGHGTTLTCLSEGV 321 (398)
T ss_dssp SHHHHHHHGGGG-TCEEEECCCC--------C--CTTEEEESCCC---HHHHGGGCSEEEE----CCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhC-CCEEEEEeCCcchhhhccC--CCcEEEeCcCC---HHHHHhhCCEEEe----cCCHHHHHHHHHhCC
Confidence 578888888877 7889888877655554433 45899999984 6778999999994 445789999999999
Q ss_pred CeEEecC----CCCCccccccCCCCeeEEeCCC--CHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 268 PVVGVRA----GGIPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 268 PvI~~~~----~~~~~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
|+|+... .+..+.+ .+.+.|+++++. +++++++++.++++|++.++++++.+++..+..+++.+++.+.
T Consensus 322 P~v~~p~~~~q~~~a~~~---~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 322 PQVSVPVIAEVWDSARLL---HAAGAGVEVPWEQAGVESVLAACARIRDDSSYVGNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp CEEECCCSGGGHHHHHHH---HHTTSEEECC-------CHHHHHHHHHHCTHHHHHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred CEEecCCchhHHHHHHHH---HHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Confidence 9999544 3555666 667889998876 7899999999999999999999999988888899999988764
No 36
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.83 E-value=2.7e-19 Score=160.49 Aligned_cols=274 Identities=13% Similarity=0.073 Sum_probs=168.7
Q ss_pred hHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCccccccc----------ccc-cchhhHHHHHHH
Q 017114 44 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRY----------TFS-WLVKPMWLVIKF 112 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~----------~~~-~~~~~~~~~~~~ 112 (377)
...+.+.+++.+||+|++++. ..+.+..+++..|+|++...++......... ... ........+.+.
T Consensus 91 ~~~l~~~l~~~~pD~Vi~d~~--~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (402)
T 3ia7_A 91 LRAAEEALGDNPPDLVVYDVF--PFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKELWKSNGQRHPADVEAVHSVLVDL 168 (402)
T ss_dssp HHHHHHHHTTCCCSEEEEEST--THHHHHHHHHHHTCCEEEEESSCCCBTTBCHHHHHHHHHTCCCGGGSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEECch--HHHHHHHHHHhhCCCEEEEecccccCccccccccccccccccChhhHHHHHHHHHHH
Confidence 356777888899999998742 2334556788899999988776543211000 000 011111111111
Q ss_pred HH------------hcC-CeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEE
Q 017114 113 LH------------RAA-DLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVH 179 (377)
Q Consensus 113 ~~------------~~~-d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 179 (377)
.. ... |..++......+...... ..++.++.+.+......+... ....+.+.++++
T Consensus 169 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~vGp~~~~~~~~~~~~--------~~~~~~~~v~v~ 237 (402)
T 3ia7_A 169 LGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETF---DERFAFVGPTLTGRDGQPGWQ--------PPRPDAPVLLVS 237 (402)
T ss_dssp HHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGGGC---CTTEEECCCCCCC----CCCC--------CSSTTCCEEEEE
T ss_pred HHHcCCCCChhhhhcCCCCeEEEEcChHhCCccccC---CCCeEEeCCCCCCcccCCCCc--------ccCCCCCEEEEE
Confidence 11 111 555555444333222211 234555543332110000000 001234567788
Q ss_pred eecccccc--cHHHHHHHHHhCCCceEEE-EecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccc
Q 017114 180 VGRLGVEK--SLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLG 256 (377)
Q Consensus 180 ~G~~~~~k--~~~~l~~a~~~l~~~~l~i-~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~ 256 (377)
.|+....+ .+..++++++.++ +++++ +|.+...+.+.+ ...++.+.|++++. ++|..||++|..+ ..
T Consensus 238 ~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~--~~~~v~~~~~~~~~---~ll~~ad~~v~~~----G~ 307 (402)
T 3ia7_A 238 LGNQFNEHPEFFRACAQAFADTP-WHVVMAIGGFLDPAVLGP--LPPNVEAHQWIPFH---SVLAHARACLTHG----TT 307 (402)
T ss_dssp CCSCSSCCHHHHHHHHHHHTTSS-CEEEEECCTTSCGGGGCS--CCTTEEEESCCCHH---HHHTTEEEEEECC----CH
T ss_pred CCCCCcchHHHHHHHHHHHhcCC-cEEEEEeCCcCChhhhCC--CCCcEEEecCCCHH---HHHhhCCEEEECC----CH
Confidence 89886655 4677777777765 66555 666544433332 13489999999654 8999999999654 24
Q ss_pred hHHHHHHhcCCCeEEecC-----CCCCccccccCCCCeeEEeCCC--CHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhc
Q 017114 257 LVVLEAMSSGIPVVGVRA-----GGIPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKY 329 (377)
Q Consensus 257 ~~~~Ea~a~G~PvI~~~~-----~~~~~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 329 (377)
++++|||++|+|+|+... ....+.+ .+.+.|..+..+ +++++++++.++++|++.++++++.+++..+..
T Consensus 308 ~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~---~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 384 (402)
T 3ia7_A 308 GAVLEAFAAGVPLVLVPHFATEAAPSAERV---IELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQRDILSSG 384 (402)
T ss_dssp HHHHHHHHTTCCEEECGGGCGGGHHHHHHH---HHTTSEEECCGGGCSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhCCCEEEeCCCcccHHHHHHHH---HHcCCEEEccCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhCC
Confidence 789999999999996544 3455566 567788888765 889999999999999999999988888877778
Q ss_pred CHHHHHHHHHHHHHH
Q 017114 330 DWRAATRTIRNEQYN 344 (377)
Q Consensus 330 s~~~~~~~~~~~ly~ 344 (377)
+++.+++.+. .+++
T Consensus 385 ~~~~~~~~i~-~~~~ 398 (402)
T 3ia7_A 385 GPARAADEVE-AYLG 398 (402)
T ss_dssp HHHHHHHHHH-HHHH
T ss_pred hHHHHHHHHH-HHHh
Confidence 8888888776 4543
No 37
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.81 E-value=8.6e-20 Score=160.94 Aligned_cols=277 Identities=14% Similarity=0.116 Sum_probs=182.4
Q ss_pred cchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeE
Q 017114 42 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 121 (377)
Q Consensus 42 ~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii 121 (377)
.....+.+++++.+||+|++++.....++ .+.++..++|++....+... ..... .-......+.+.+|.++
T Consensus 81 ~~~~~l~~~l~~~kPD~Vlv~gd~~~~~a-alaA~~~~IPv~h~eaglrs-----~~~~~---pee~nR~~~~~~a~~~~ 151 (385)
T 4hwg_A 81 LVIEKVDEVLEKEKPDAVLFYGDTNSCLS-AIAAKRRKIPIFHMEAGNRC-----FDQRV---PEEINRKIIDHISDVNI 151 (385)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESCSGGGGG-HHHHHHTTCCEEEESCCCCC-----SCTTS---THHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHhcCCcEEEEECCchHHHH-HHHHHHhCCCEEEEeCCCcc-----ccccC---cHHHHHHHHHhhhceee
Confidence 45567889999999999999986555555 56888999997643333211 00001 11122334457799999
Q ss_pred ecChhHHHHHHHhcccCCCcEEEecCCC-CCCCCC-CccCchHHHHHhhCCCCCCCeEEEeecc---cccccHHHHHHHH
Q 017114 122 VPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFH-PRFRSSEMRWRLSNGEPDKPLIVHVGRL---GVEKSLDFLKRVM 196 (377)
Q Consensus 122 ~~s~~~~~~~~~~~~~~~~~i~~i~~gv-~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~G~~---~~~k~~~~l~~a~ 196 (377)
+.++..++.+.+.+. +++++.+++|+. |...+. +.....+.+.++... +++.+++..|+. +..++++.+++++
T Consensus 152 ~~te~~~~~l~~~G~-~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl~-~~~~iLvt~hr~e~~~~~~~l~~ll~al 229 (385)
T 4hwg_A 152 TLTEHARRYLIAEGL-PAELTFKSGSHMPEVLDRFMPKILKSDILDKLSLT-PKQYFLISSHREENVDVKNNLKELLNSL 229 (385)
T ss_dssp ESSHHHHHHHHHTTC-CGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTCC-TTSEEEEEECCC-----CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCC-CcCcEEEECCchHHHHHHhhhhcchhHHHHHcCCC-cCCEEEEEeCCchhcCcHHHHHHHHHHH
Confidence 999999999988775 667899999864 322111 001122334444432 244555556653 3347788999998
Q ss_pred HhCC---CceEEEEecCccHHHHHHh---hc-CCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCe
Q 017114 197 DRLP---EARIAFIGDGPYREELEKM---FT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 269 (377)
Q Consensus 197 ~~l~---~~~l~i~G~g~~~~~l~~~---~~-~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 269 (377)
..+. ++.+++.......+.+++. .. ..+|.+.+.++..++..+|+.||+++.+| |....||+++|+|+
T Consensus 230 ~~l~~~~~~~vv~p~~p~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S-----Ggv~~EA~alG~Pv 304 (385)
T 4hwg_A 230 QMLIKEYNFLIIFSTHPRTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS-----GTITEEASILNLPA 304 (385)
T ss_dssp HHHHHHHCCEEEEEECHHHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC-----TTHHHHHHHTTCCE
T ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC-----ccHHHHHHHcCCCE
Confidence 8763 6776665543334445544 22 24799999888889999999999999766 45679999999999
Q ss_pred EEecCC-CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHH-HHhcCHHHHHHHHH
Q 017114 270 VGVRAG-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQE-MEKYDWRAATRTIR 339 (377)
Q Consensus 270 I~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~ 339 (377)
|+.+.. ..+|.+ +.+ ++.++.. |++++++++.++++|+..++.|++++..+ ....+.+.+++.+.
T Consensus 305 v~~~~~ter~e~v---~~G-~~~lv~~-d~~~i~~ai~~ll~d~~~~~~m~~~~~~~~g~g~aa~rI~~~l~ 371 (385)
T 4hwg_A 305 LNIREAHERPEGM---DAG-TLIMSGF-KAERVLQAVKTITEEHDNNKRTQGLVPDYNEAGLVSKKILRIVL 371 (385)
T ss_dssp EECSSSCSCTHHH---HHT-CCEECCS-SHHHHHHHHHHHHTTCBTTBCCSCCCHHHHTCCCHHHHHHHHHH
T ss_pred EEcCCCccchhhh---hcC-ceEEcCC-CHHHHHHHHHHHHhChHHHHHhhccCCCCCCCChHHHHHHHHHH
Confidence 987654 356666 444 5666643 89999999999999987766665544444 33445555555554
No 38
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.81 E-value=9.6e-19 Score=157.53 Aligned_cols=273 Identities=12% Similarity=0.031 Sum_probs=164.4
Q ss_pred hHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCccccccc---------c-cc-cchhhHHHHHHH
Q 017114 44 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRY---------T-FS-WLVKPMWLVIKF 112 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~---------~-~~-~~~~~~~~~~~~ 112 (377)
...+.+.+++.+||+|++.++ ..+.+..+++..|+|++...++......... . .. ........+.+.
T Consensus 107 ~~~l~~~l~~~~PDlVi~d~~--~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 184 (415)
T 3rsc_A 107 LRATAEALDGDVPDLVLYDDF--PFIAGQLLAARWRRPAVRLSAAFASNEHYSFSQDMVTLAGTIDPLDLPVFRDTLRDL 184 (415)
T ss_dssp HHHHHHHHSSSCCSEEEEEST--THHHHHHHHHHTTCCEEEEESSCCCCSSCCHHHHHHHHHTCCCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEECch--hhhHHHHHHHHhCCCEEEEEecccccCccccccccccccccCChhhHHHHHHHHHHH
Confidence 356777888899999997632 2334456788899999998876542210000 0 00 011111111111
Q ss_pred HHh-------------cCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEE
Q 017114 113 LHR-------------AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVH 179 (377)
Q Consensus 113 ~~~-------------~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 179 (377)
..+ .+|..++......+...... ..++.++.+.+....-.+. ......+.+.++++
T Consensus 185 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~vGp~~~~~~~~~~--------~~~~~~~~~~v~v~ 253 (415)
T 3rsc_A 185 LAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTF---DDRFVFVGPCFDDRRFLGE--------WTRPADDLPVVLVS 253 (415)
T ss_dssp HHHTTCCCCHHHHHTCCCSEEEESSCTTTSTTGGGC---CTTEEECCCCCCCCGGGCC--------CCCCSSCCCEEEEE
T ss_pred HHHcCCCCChhhhhcCCCCeEEEEcCcccCCCcccC---CCceEEeCCCCCCcccCcC--------ccccCCCCCEEEEE
Confidence 111 11444444433322221111 2234444322211000000 00001234567778
Q ss_pred eecccccc--cHHHHHHHHHhCCCceEEE-EecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccc
Q 017114 180 VGRLGVEK--SLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLG 256 (377)
Q Consensus 180 ~G~~~~~k--~~~~l~~a~~~l~~~~l~i-~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~ 256 (377)
.|+..... .+..++++++.++ +++++ +|.+...+.+... ..++.+.+++++. .+|..||++|..+ ..
T Consensus 254 ~Gs~~~~~~~~~~~~~~al~~~~-~~~v~~~g~~~~~~~l~~~--~~~v~~~~~~~~~---~ll~~ad~~v~~~----G~ 323 (415)
T 3rsc_A 254 LGTTFNDRPGFFRDCARAFDGQP-WHVVMTLGGQVDPAALGDL--PPNVEAHRWVPHV---KVLEQATVCVTHG----GM 323 (415)
T ss_dssp CTTTSCCCHHHHHHHHHHHTTSS-CEEEEECTTTSCGGGGCCC--CTTEEEESCCCHH---HHHHHEEEEEESC----CH
T ss_pred CCCCCCChHHHHHHHHHHHhcCC-cEEEEEeCCCCChHHhcCC--CCcEEEEecCCHH---HHHhhCCEEEECC----cH
Confidence 88875433 3677777777775 77776 6665444333321 3489999999644 7899999999654 34
Q ss_pred hHHHHHHhcCCCeEEecC----CCCCccccccCCCCeeEEeCCC--CHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcC
Q 017114 257 LVVLEAMSSGIPVVGVRA----GGIPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYD 330 (377)
Q Consensus 257 ~~~~Ea~a~G~PvI~~~~----~~~~~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s 330 (377)
++++||+++|+|+|+... ....+.+ .+.+.|..+... +++++++++.++++|++.++.+++.+++..+..+
T Consensus 324 ~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 400 (415)
T 3rsc_A 324 GTLMEALYWGRPLVVVPQSFDVQPMARRV---DQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRGHVRRAGG 400 (415)
T ss_dssp HHHHHHHHTTCCEEECCCSGGGHHHHHHH---HHHTCEEECCGGGCCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHhCCCEEEeCCcchHHHHHHHH---HHcCCEEEcccCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCH
Confidence 789999999999998543 3345555 556678888765 8899999999999999999999888888777788
Q ss_pred HHHHHHHHHHHHH
Q 017114 331 WRAATRTIRNEQY 343 (377)
Q Consensus 331 ~~~~~~~~~~~ly 343 (377)
++.+++.+. .++
T Consensus 401 ~~~~~~~i~-~~~ 412 (415)
T 3rsc_A 401 AARAADAVE-AYL 412 (415)
T ss_dssp HHHHHHHHH-HHH
T ss_pred HHHHHHHHH-HHh
Confidence 888888776 344
No 39
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.80 E-value=3.5e-19 Score=159.11 Aligned_cols=262 Identities=12% Similarity=0.103 Sum_probs=163.8
Q ss_pred hHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhc-------
Q 017114 44 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRA------- 116 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 116 (377)
...+.+.+++.+||+|+++.. .+.+.++++..|+|++...|+...... ........++.....+.
T Consensus 103 ~~~l~~~l~~~~PD~Vv~~~~---~~~~~~aa~~~giP~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 174 (391)
T 3tsa_A 103 LPEYLRLAEAWRPSVLLVDVC---ALIGRVLGGLLDLPVVLHRWGVDPTAG-----PFSDRAHELLDPVCRHHGLTGLPT 174 (391)
T ss_dssp HHHHHHHHHHHCCSEEEEETT---CHHHHHHHHHTTCCEEEECCSCCCTTT-----HHHHHHHHHHHHHHHHTTSSSSCC
T ss_pred HHHHHHHHHhcCCCEEEeCcc---hhHHHHHHHHhCCCEEEEecCCccccc-----cccchHHHHHHHHHHHcCCCCCCC
Confidence 556788889999999999753 234455778899999988777532110 00011111122221111
Q ss_pred CCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccc-c----HHH
Q 017114 117 ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK-S----LDF 191 (377)
Q Consensus 117 ~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k-~----~~~ 191 (377)
.+.++.......+...... ...+.++| .+ . ............+.+.++++.|+....+ + ++.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~---~~~~~~~p--~~-----~---~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~ 241 (391)
T 3tsa_A 175 PELILDPCPPSLQASDAPQ---GAPVQYVP--YN-----G---SGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRA 241 (391)
T ss_dssp CSEEEECSCGGGSCTTSCC---CEECCCCC--CC-----C---CEECCGGGSSCCSSEEEEEECCHHHHHHHCSHHHHHH
T ss_pred CceEEEecChhhcCCCCCc---cCCeeeec--CC-----C---CcCCCchhhcCCCCCEEEEEcCCCCCcccchHHHHHH
Confidence 1444444433221111000 00111111 00 0 0000000111123445677788885432 2 556
Q ss_pred HHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEE
Q 017114 192 LKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 192 l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 271 (377)
++++ +.+|++++++.|++...+.+... ..++.+.|+++..+ ++..||++|. ++.+++++|||++|+|+|+
T Consensus 242 ~~~~-~~~p~~~~v~~~~~~~~~~l~~~--~~~v~~~~~~~~~~---ll~~ad~~v~----~~G~~t~~Ea~~~G~P~v~ 311 (391)
T 3tsa_A 242 VAAA-TELPGVEAVIAVPPEHRALLTDL--PDNARIAESVPLNL---FLRTCELVIC----AGGSGTAFTATRLGIPQLV 311 (391)
T ss_dssp HHHH-HTSTTEEEEEECCGGGGGGCTTC--CTTEEECCSCCGGG---TGGGCSEEEE----CCCHHHHHHHHHTTCCEEE
T ss_pred HHHh-ccCCCeEEEEEECCcchhhcccC--CCCEEEeccCCHHH---HHhhCCEEEe----CCCHHHHHHHHHhCCCEEe
Confidence 6677 77788999999876644333321 34899999986544 5699999994 4456799999999999999
Q ss_pred ecC----CCCCccccccCCCCeeEEeCC----CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 272 VRA----GGIPDIIPEDQDGKIGYLFNP----GDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 272 ~~~----~~~~~~~~~~~~~~~g~~~~~----~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
... ....+.+ .+.+.|.++++ .+++++++++.++++|++.++++++.+++..+..+++.+++.+.
T Consensus 312 ~p~~~~q~~~a~~~---~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 384 (391)
T 3tsa_A 312 LPQYFDQFDYARNL---AAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEITAMPHPAALVRTLE 384 (391)
T ss_dssp CCCSTTHHHHHHHH---HHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred cCCcccHHHHHHHH---HHcCCEEecCcccccCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 644 2344556 66778999987 68999999999999999999999998888888899999888776
No 40
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.78 E-value=1.2e-17 Score=149.50 Aligned_cols=262 Identities=15% Similarity=0.067 Sum_probs=159.2
Q ss_pred cchHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHh--cCCe
Q 017114 42 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHR--AADL 119 (377)
Q Consensus 42 ~~~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~ 119 (377)
.....+.+.+++.+||+|++... .+.+.++++..|+|++...++..... ...............++.+. ..+.
T Consensus 117 ~~~~~l~~~l~~~~pDlVv~d~~---~~~~~~aA~~~giP~v~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~ 191 (398)
T 3oti_A 117 PLVDGTMALVDDYRPDLVVYEQG---ATVGLLAADRAGVPAVQRNQSAWRTR--GMHRSIASFLTDLMDKHQVSLPEPVA 191 (398)
T ss_dssp GGHHHHHHHHHHHCCSEEEEETT---CHHHHHHHHHHTCCEEEECCTTCCCT--THHHHHHTTCHHHHHHTTCCCCCCSE
T ss_pred HHHHHHHHHHHHcCCCEEEECch---hhHHHHHHHHcCCCEEEEeccCCCcc--chhhHHHHHHHHHHHHcCCCCCCCCe
Confidence 34567888899999999998532 23345678899999998776642211 00000000011111111111 1233
Q ss_pred eEecChhHHHHHHHhcccCCCcEEEec-CCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccc----cccHHHHHH
Q 017114 120 TLVPSVAIGKDLEAARVTAANKIRIWK-KGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV----EKSLDFLKR 194 (377)
Q Consensus 120 ii~~s~~~~~~~~~~~~~~~~~i~~i~-~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~----~k~~~~l~~ 194 (377)
.+...+....... .....++.+++ ++.. .... .+....+.+.+++++|++.. .+.+..+++
T Consensus 192 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~---------~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~ 257 (398)
T 3oti_A 192 TIESFPPSLLLEA---EPEGWFMRWVPYGGGA--VLGD---------RLPPVPARPEVAITMGTIELQAFGIGAVEPIIA 257 (398)
T ss_dssp EECSSCGGGGTTS---CCCSBCCCCCCCCCCE--ECCS---------SCCCCCSSCEEEECCTTTHHHHHCGGGHHHHHH
T ss_pred EEEeCCHHHCCCC---CCCCCCccccCCCCCc--CCch---------hhhcCCCCCEEEEEcCCCccccCcHHHHHHHHH
Confidence 4433332111110 00011111222 1100 0000 00001234567778899843 345667777
Q ss_pred HHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEe--
Q 017114 195 VMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV-- 272 (377)
Q Consensus 195 a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~-- 272 (377)
+++.. +++++++|++...+.+... ..+|.+.|++ ++.++|..||++|. .+.+++++|||++|+|+|+.
T Consensus 258 ~l~~~-~~~~v~~~g~~~~~~l~~~--~~~v~~~~~~---~~~~ll~~ad~~v~----~~G~~t~~Eal~~G~P~v~~p~ 327 (398)
T 3oti_A 258 AAGEV-DADFVLALGDLDISPLGTL--PRNVRAVGWT---PLHTLLRTCTAVVH----HGGGGTVMTAIDAGIPQLLAPD 327 (398)
T ss_dssp HHHTS-SSEEEEECTTSCCGGGCSC--CTTEEEESSC---CHHHHHTTCSEEEE----CCCHHHHHHHHHHTCCEEECCC
T ss_pred HHHcC-CCEEEEEECCcChhhhccC--CCcEEEEccC---CHHHHHhhCCEEEE----CCCHHHHHHHHHhCCCEEEcCC
Confidence 77766 7899998877653333222 3489999998 46678899999994 34568999999999999994
Q ss_pred --cCCCCC--ccccccCCCCeeEEeCCC--CHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 273 --RAGGIP--DIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 273 --~~~~~~--~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
+..... +.+ ++.+.|+.+++. +++.++ ++++|++.++++++.+++..+..+++.+++.+.
T Consensus 328 ~~dq~~~a~~~~~---~~~g~g~~~~~~~~~~~~l~----~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 393 (398)
T 3oti_A 328 PRDQFQHTAREAV---SRRGIGLVSTSDKVDADLLR----RLIGDESLRTAAREVREEMVALPTPAETVRRIV 393 (398)
T ss_dssp TTCCSSCTTHHHH---HHHTSEEECCGGGCCHHHHH----HHHHCHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CchhHHHHHHHHH---HHCCCEEeeCCCCCCHHHHH----HHHcCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 456666 777 667789988765 455555 788899999999999988888899999998876
No 41
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.71 E-value=6.6e-16 Score=137.45 Aligned_cols=260 Identities=15% Similarity=0.113 Sum_probs=162.0
Q ss_pred hHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhc-------
Q 017114 44 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRA------- 116 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 116 (377)
...+.+.+++.+||+|+++... ..+..+++..|+|++...++.... .. ........+.+...+.
T Consensus 96 ~~~l~~~l~~~~pD~Vi~~~~~---~~~~~~a~~~giP~v~~~~~~~~~--~~----~~~~~~~~~~~~~~~~g~~~~~~ 166 (384)
T 2p6p_A 96 LPRMLDFSRAWRPDLIVGGTMS---YVAPLLALHLGVPHARQTWDAVDA--DG----IHPGADAELRPELSELGLERLPA 166 (384)
T ss_dssp HHHHHHHHHHHCCSEEEEETTC---THHHHHHHHHTCCEEEECCSSCCC--TT----THHHHHHHTHHHHHHTTCSSCCC
T ss_pred HHHHHHHHhccCCcEEEECcch---hhHHHHHHhcCCCEEEeccCCccc--ch----hhHHHHHHHHHHHHHcCCCCCCC
Confidence 3456677888999999997642 234457788899999877653211 00 0000111111111111
Q ss_pred CCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeeccccc-------ccH
Q 017114 117 ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE-------KSL 189 (377)
Q Consensus 117 ~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~-------k~~ 189 (377)
++.+++.+....+.... .+..++..++ .+. +. ...+. +....+...+++++|++... +.+
T Consensus 167 ~~~~l~~~~~~~~~~~~---~~~~~~~~~~--~~~----~~-~~~~~---l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~ 233 (384)
T 2p6p_A 167 PDLFIDICPPSLRPANA---APARMMRHVA--TSR----QC-PLEPW---MYTRDTRQRVLVTSGSRVAKESYDRNFDFL 233 (384)
T ss_dssp CSEEEECSCGGGSCTTS---CCCEECCCCC--CCC----CC-BCCHH---HHCCCSSCEEEEECSSSSSCCSSCCCCTTH
T ss_pred CCeEEEECCHHHCCCCC---CCCCceEecC--CCC----CC-CCCch---hhcCCCCCEEEEECCCCCccccccccHHHH
Confidence 56666665543221100 0111121221 110 00 00111 11112345678889998764 678
Q ss_pred HHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCe
Q 017114 190 DFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 269 (377)
Q Consensus 190 ~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 269 (377)
..+++++..+ ++++++.+++...+.+... ..+|.+ |+++. .++|..||++|.. +.+++++|||++|+|+
T Consensus 234 ~~~~~al~~~-~~~~~~~~g~~~~~~l~~~--~~~v~~-~~~~~---~~~l~~~d~~v~~----~G~~t~~Ea~~~G~P~ 302 (384)
T 2p6p_A 234 RGLAKDLVRW-DVELIVAAPDTVAEALRAE--VPQARV-GWTPL---DVVAPTCDLLVHH----AGGVSTLTGLSAGVPQ 302 (384)
T ss_dssp HHHHHHHHTT-TCEEEEECCHHHHHHHHHH--CTTSEE-ECCCH---HHHGGGCSEEEEC----SCTTHHHHHHHTTCCE
T ss_pred HHHHHHHhcC-CcEEEEEeCCCCHHhhCCC--CCceEE-cCCCH---HHHHhhCCEEEeC----CcHHHHHHHHHhCCCE
Confidence 8899999876 7888876544444444432 458999 99864 5678999999965 3467899999999999
Q ss_pred EEecCCC----CCccccccCCCCeeEEeCCC--CHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017114 270 VGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 270 I~~~~~~----~~~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 339 (377)
|+.+..+ ..+.+ .+.+.|+.+++. ++++++++|.++++|++.++++++.+++....-..+.+++.+.
T Consensus 303 v~~p~~~dq~~~a~~~---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 375 (384)
T 2p6p_A 303 LLIPKGSVLEAPARRV---ADYGAAIALLPGEDSTEAIADSCQELQAKDTYARRAQDLSREISGMPLPATVVTALE 375 (384)
T ss_dssp EECCCSHHHHHHHHHH---HHHTSEEECCTTCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred EEccCcccchHHHHHH---HHCCCeEecCcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9987643 44555 556678888754 7899999999999999998888888877766667777776655
No 42
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.61 E-value=2.4e-14 Score=129.11 Aligned_cols=154 Identities=12% Similarity=0.075 Sum_probs=107.5
Q ss_pred CCCeEEEeecccc--cccHHHHHHHHHhCCCceEE-EEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEec
Q 017114 173 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIA-FIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMP 249 (377)
Q Consensus 173 ~~~~i~~~G~~~~--~k~~~~l~~a~~~l~~~~l~-i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~p 249 (377)
...++++.|+... .+.+..++++++. .+++++ ++|.+...+.+.. ...++.+.+++++. ++|..||++|..
T Consensus 255 ~~~v~v~~Gs~~~~~~~~~~~~~~al~~-~~~~~~~~~g~~~~~~~~~~--~~~~v~~~~~~~~~---~~l~~~d~~v~~ 328 (424)
T 2iya_A 255 RPVLLIALGSAFTDHLDFYRTCLSAVDG-LDWHVVLSVGRFVDPADLGE--VPPNVEVHQWVPQL---DILTKASAFITH 328 (424)
T ss_dssp CCEEEEECCSSSCCCHHHHHHHHHHHTT-CSSEEEEECCTTSCGGGGCS--CCTTEEEESSCCHH---HHHTTCSEEEEC
T ss_pred CCEEEEEcCCCCcchHHHHHHHHHHHhc-CCcEEEEEECCcCChHHhcc--CCCCeEEecCCCHH---HHHhhCCEEEEC
Confidence 4567778888762 2345556666655 467774 4676554333221 13479999999654 689999998853
Q ss_pred cCCcccchHHHHHHhcCCCeEEecCCC----CCccccccCCCCeeEEeCCC--CHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 017114 250 SESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAAR 323 (377)
Q Consensus 250 s~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~ 323 (377)
+..++++||+++|+|+|+....+ ..+.+ .+.+.|..++.. ++++++++|.++++|++.++++++.++
T Consensus 329 ----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 401 (424)
T 2iya_A 329 ----AGMGSTMEALSNAVPMVAVPQIAEQTMNAERI---VELGLGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQ 401 (424)
T ss_dssp ----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHH---HHTTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ----CchhHHHHHHHcCCCEEEecCccchHHHHHHH---HHCCCEEEcCcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 34589999999999999987642 33445 456678877654 889999999999999988888777776
Q ss_pred HHHHhcCHHHHHHHHH
Q 017114 324 QEMEKYDWRAATRTIR 339 (377)
Q Consensus 324 ~~~~~~s~~~~~~~~~ 339 (377)
+..+....+..++.+.
T Consensus 402 ~~~~~~~~~~~~~~i~ 417 (424)
T 2iya_A 402 EIREAGGARAAADILE 417 (424)
T ss_dssp HHHTSCHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHH
Confidence 6555555666665554
No 43
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.60 E-value=1.7e-14 Score=130.73 Aligned_cols=154 Identities=13% Similarity=0.028 Sum_probs=114.8
Q ss_pred CCCeEEEeeccccc-----ccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEE
Q 017114 173 DKPLIVHVGRLGVE-----KSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 247 (377)
Q Consensus 173 ~~~~i~~~G~~~~~-----k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v 247 (377)
...++++.|+.... +.+..++++++.+ ++++++.+++...+.+.. ...+|.+.+++++ .++|..||++|
T Consensus 267 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-~~~~v~~~g~~~~~~l~~--~~~~v~~~~~~~~---~~ll~~ad~~V 340 (441)
T 2yjn_A 267 RRRVCLTLGISSRENSIGQVSIEELLGAVGDV-DAEIIATFDAQQLEGVAN--IPDNVRTVGFVPM---HALLPTCAATV 340 (441)
T ss_dssp SCEEEEEC----------CCSTTTTHHHHHTS-SSEEEECCCTTTTSSCSS--CCSSEEECCSCCH---HHHGGGCSEEE
T ss_pred CCEEEEECCCCcccccChHHHHHHHHHHHHcC-CCEEEEEECCcchhhhcc--CCCCEEEecCCCH---HHHHhhCCEEE
Confidence 34578889988653 7888899999876 788888765543322221 1348999999975 35689999999
Q ss_pred eccCCcccchHHHHHHhcCCCeEEecCCC----CCccccccCCCCeeEEeCCC--CHHHHHHHHHHHhhCHHHHHHHHHH
Q 017114 248 MPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQA 321 (377)
Q Consensus 248 ~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~ 321 (377)
.. +.+++++||+++|+|+|+.+..+ ..+.+ .+.+.|+.++.. ++++++++|.++++|++.++.+++.
T Consensus 341 ~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 413 (441)
T 2yjn_A 341 HH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRT---QEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARM 413 (441)
T ss_dssp EC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHH---HHHTSEEECCTTTCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred EC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHH---HHcCCEEEcccccCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 63 44689999999999999987642 44455 556678888765 8899999999999999999999888
Q ss_pred HHHHHHhcCHHHHHHHHH
Q 017114 322 ARQEMEKYDWRAATRTIR 339 (377)
Q Consensus 322 ~~~~~~~~s~~~~~~~~~ 339 (377)
+++..+....+.+++.+.
T Consensus 414 ~~~~~~~~~~~~~~~~i~ 431 (441)
T 2yjn_A 414 RDDMLAEPSPAEVVGICE 431 (441)
T ss_dssp HHHHHTSCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 887777788888887776
No 44
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.53 E-value=1.3e-13 Score=123.23 Aligned_cols=152 Identities=12% Similarity=0.054 Sum_probs=102.9
Q ss_pred CCCCeEEEeeccc-ccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEecc
Q 017114 172 PDKPLIVHVGRLG-VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 250 (377)
Q Consensus 172 ~~~~~i~~~G~~~-~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps 250 (377)
..+.+++..|+.. ..+.++.++++++.+ ++++++.++....+. .....++.+.+++++ ..+|..||++|...
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~-~~~vv~~~g~~~~~~---~~~~~~v~~~~~~~~---~~ll~~~d~~v~~g 292 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRAQ-GRRVVLSSGWAGLGR---IDEGDDCLVVGEVNH---QVLFGRVAAVVHHG 292 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHHT-TCCEEEECTTTTCCC---SSCCTTEEEESSCCH---HHHGGGSSEEEECC
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHhC-CCEEEEEeCCccccc---ccCCCCEEEecCCCH---HHHHhhCcEEEECC
Confidence 3566778889887 677788999999887 577777654322111 112458999999965 45678999999443
Q ss_pred CCcccchHHHHHHhcCCCeEEecCCCC----CccccccCCCCeeEEeCCC--CHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 017114 251 ESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQ 324 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~~~~~~~----~~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 324 (377)
..+++.||+++|+|+|+....+- .+.+ ++.+.|..+... +++++.+++.++++ ++.++.+.+.+..
T Consensus 293 ----G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~---~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~~~ 364 (404)
T 3h4t_A 293 ----GAGTTTAVTRAGAPQVVVPQKADQPYYAGRV---ADLGVGVAHDGPTPTVESLSAALATALT-PGIRARAAAVAGT 364 (404)
T ss_dssp ----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHHHHHHHHHTT
T ss_pred ----cHHHHHHHHHcCCCEEEcCCcccHHHHHHHH---HHCCCEeccCcCCCCHHHHHHHHHHHhC-HHHHHHHHHHHHH
Confidence 35789999999999998765432 2334 445667776543 78999999999998 7766665554443
Q ss_pred HHHhcCHHHHHHHHH
Q 017114 325 EMEKYDWRAATRTIR 339 (377)
Q Consensus 325 ~~~~~s~~~~~~~~~ 339 (377)
... ...+.+++.+.
T Consensus 365 ~~~-~~~~~~~~~i~ 378 (404)
T 3h4t_A 365 IRT-DGTTVAAKLLL 378 (404)
T ss_dssp CCC-CHHHHHHHHHH
T ss_pred Hhh-hHHHHHHHHHH
Confidence 333 34444444443
No 45
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.50 E-value=2.8e-12 Score=115.08 Aligned_cols=136 Identities=12% Similarity=0.093 Sum_probs=97.2
Q ss_pred CCCeEEEeecc-cccccHHHHHHHHHhCCCceEEEE-ecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEecc
Q 017114 173 DKPLIVHVGRL-GVEKSLDFLKRVMDRLPEARIAFI-GDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 250 (377)
Q Consensus 173 ~~~~i~~~G~~-~~~k~~~~l~~a~~~l~~~~l~i~-G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps 250 (377)
...++++.|+. ...+..+.++++++.++ .+++++ |.+... .. ....++.+.+++++.+ +|..||++|..
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~~-~~~v~~~g~~~~~--~~--~~~~~v~~~~~~~~~~---~l~~~d~~v~~- 308 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAHG-RRVILSRGWADLV--LP--DDGADCFAIGEVNHQV---LFGRVAAVIHH- 308 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHTT-CCEEECTTCTTCC--CS--SCGGGEEECSSCCHHH---HGGGSSEEEEC-
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHCC-CeEEEEeCCCccc--cc--CCCCCEEEeCcCChHH---HHhhCCEEEeC-
Confidence 45778889998 47888899999998874 566655 654321 11 1123799999997654 57999999964
Q ss_pred CCcccchHHHHHHhcCCCeEEecCCC----CCccccccCCCCeeEEeCCC--CHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 017114 251 ESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQ 324 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 324 (377)
+..++++||+++|+|+|+.+..+ ..+.+ ++.+.|..++.. +.++++++|.++ +|++.++++.+.+++
T Consensus 309 ---~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~~~~ 381 (415)
T 1iir_A 309 ---GGAGTTHVAARAGAPQILLPQMADQPYYAGRV---AELGVGVAHDGPIPTFDSLSAALATA-LTPETHARATAVAGT 381 (415)
T ss_dssp ---CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HHHTSEEECSSSSCCHHHHHHHHHHH-TSHHHHHHHHHHHHH
T ss_pred ---CChhHHHHHHHcCCCEEECCCCCccHHHHHHH---HHCCCcccCCcCCCCHHHHHHHHHHH-cCHHHHHHHHHHHHH
Confidence 34579999999999999987643 33445 455678877643 789999999999 988776665554444
No 46
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=107.95 Aligned_cols=133 Identities=14% Similarity=0.243 Sum_probs=100.6
Q ss_pred CCCCeEEEeeccc---ccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEe
Q 017114 172 PDKPLIVHVGRLG---VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 248 (377)
Q Consensus 172 ~~~~~i~~~G~~~---~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ 248 (377)
+...+++++|+.. +.+.+..++++++.++ .++++++++...+. ...+|.+.|++++.++..+ ..||++|.
T Consensus 20 ~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~-~~~~~~~g~~~~~~-----~~~~v~~~~~~~~~~~l~~-~~ad~~I~ 92 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTEERANVIASALAQIP-QKVLWRFDGNKPDT-----LGLNTRLYKWIPQNDLLGH-PKTRAFIT 92 (170)
T ss_dssp TTCEEEEECCSCCTTCCHHHHHHHHHHHTTSS-SEEEEECCSSCCTT-----CCTTEEEESSCCHHHHHTS-TTEEEEEE
T ss_pred CCCEEEEECCCCcccCCHHHHHHHHHHHHhCC-CeEEEEECCcCccc-----CCCcEEEecCCCHHHHhcC-CCcCEEEE
Confidence 3456888899885 6788899999998774 77777765543211 1348999999987655433 89999996
Q ss_pred ccCCcccchHHHHHHhcCCCeEEecCCC----CCccccccCCCCeeEEeCCC--CHHHHHHHHHHHhhCHHHHHHH
Q 017114 249 PSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETM 318 (377)
Q Consensus 249 ps~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~~~~~~ 318 (377)
. +.+++++|||++|+|+|+.+..+ ..+.+ .+.+.|+.+++. ++++++++|.++++|++.++.+
T Consensus 93 ~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~a 161 (170)
T 2o6l_A 93 H----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHM---KARGAAVRVDFNTMSSTDLLNALKRVINDPSYKENV 161 (170)
T ss_dssp C----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HTTTSEEECCTTTCCHHHHHHHHHHHHHCHHHHHHH
T ss_pred c----CCccHHHHHHHcCCCEEeccchhhHHHHHHHH---HHcCCeEEeccccCCHHHHHHHHHHHHcCHHHHHHH
Confidence 3 44699999999999999997642 34456 667789988866 7899999999999998754443
No 47
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.48 E-value=1.1e-13 Score=123.84 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=97.4
Q ss_pred CCCCeEEEeeccccccc----HHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEE
Q 017114 172 PDKPLIVHVGRLGVEKS----LDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 247 (377)
Q Consensus 172 ~~~~~i~~~G~~~~~k~----~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v 247 (377)
....+++..|++...++ +..+++++... +.++++.+.+...+.... ...|+.+.+++|+. .+|..+|++|
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~-~~~~v~~~~~~~~~~~~~--~~~~v~~~~~~p~~---~lL~~~~~~v 309 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFSEVADV-DAEFVLTLGGGDLALLGE--LPANVRVVEWIPLG---ALLETCDAII 309 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHHHGGGS-SSEEEEECCTTCCCCCCC--CCTTEEEECCCCHH---HHHTTCSEEE
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHHHhhcc-CceEEEEecCcccccccc--CCCCEEEEeecCHH---HHhhhhhhee
Confidence 34456667787754432 44555555554 556666553332111111 13479999999654 5678999988
Q ss_pred eccCCcccchHHHHHHhcCCCeEEecCCC----CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 017114 248 MPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAAR 323 (377)
Q Consensus 248 ~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ 323 (377)
. .+..+++.||+++|+|+|+....+ ..+.+ .+.+.|..++. .+..+++|.++++|++.++..++.++
T Consensus 310 ~----h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v---~~~G~g~~l~~--~~~~~~al~~lL~d~~~r~~a~~l~~ 380 (400)
T 4amg_A 310 H----HGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVL---TGLGIGFDAEA--GSLGAEQCRRLLDDAGLREAALRVRQ 380 (400)
T ss_dssp E----CCCHHHHHHHHHHTCCEEECCC---CHHHHHHH---HHHTSEEECCT--TTCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred c----cCCccHHHHHHHhCCCEEEecCcccHHHHHHHH---HHCCCEEEcCC--CCchHHHHHHHHcCHHHHHHHHHHHH
Confidence 3 455689999999999999875543 33444 44556777764 44568899999999988777666665
Q ss_pred HHHHhcCHHHHHHHHH
Q 017114 324 QEMEKYDWRAATRTIR 339 (377)
Q Consensus 324 ~~~~~~s~~~~~~~~~ 339 (377)
+....-+....++.+.
T Consensus 381 ~~~~~~~~~~~a~~le 396 (400)
T 4amg_A 381 EMSEMPPPAETAAXLV 396 (400)
T ss_dssp HHHTSCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHH
Confidence 5555557777766654
No 48
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.46 E-value=3.3e-12 Score=116.24 Aligned_cols=272 Identities=14% Similarity=0.099 Sum_probs=166.3
Q ss_pred hHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEec
Q 017114 44 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 123 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 123 (377)
...+.+.|++.++||++--+.+... ....++..+-.|+-++.-++.... + ....|++++-
T Consensus 338 ~~~ia~~Ir~d~IDILVdL~g~t~~-~~i~~aa~RpAPVQvs~lGyp~TT-G------------------l~~iDY~i~D 397 (631)
T 3q3e_A 338 LEFIRSVCESNGAAIFYMPSIGMDM-TTIFASNTRLAPIQAIALGHPATT-H------------------SDFIEYVIVE 397 (631)
T ss_dssp HHHHHHHHHHHTCSEEEESCCSSSH-HHHHHTTSCCSSEEEEECSSCSCC-C------------------CTTCCEEEEE
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCc-hhHHHHhCCCchheEeccCCCccc-C------------------cccCCEEEeC
Confidence 4678899999999999875543332 223344455679988877753221 1 1235555553
Q ss_pred ChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCC-CCCCeEEEeecccccccHHHHHHHHH----h
Q 017114 124 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGE-PDKPLIVHVGRLGVEKSLDFLKRVMD----R 198 (377)
Q Consensus 124 s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~G~~~~~k~~~~l~~a~~----~ 198 (377)
..... -... ..+++..+|+..-. +.+..... .+..+.... ++.++++.+++ ..|..+.+++++. .
T Consensus 398 ~~~~~--~~~~---ysEklirLP~~~~~--~~p~~~~p-~r~~~~lp~~~G~v~Fg~fn~--~~Ki~p~~l~~WarIL~~ 467 (631)
T 3q3e_A 398 DDYVG--SEEC---FSETLLRLPKDALP--YVPSALAP-EKVDYLLRENPEVVNIGIAST--TMKLNPYFLEALKAIRDR 467 (631)
T ss_dssp GGGCC--CGGG---CSSEEEEECTTSSC--CCCCTTCC-SSCCCCCCSCCSEEEEEEEEC--STTCCHHHHHHHHHHHHH
T ss_pred CCCCC--cccC---ceeeEEECCCCccc--cCCcccCC-ccccccCCcCCCeEEEEECCc--cccCCHHHHHHHHHHHHh
Confidence 32111 0122 35788888864311 11111100 011111111 12345555555 4677677766665 4
Q ss_pred CCCceEE--EEec--CccHHHHHH---hhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEE
Q 017114 199 LPEARIA--FIGD--GPYREELEK---MFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 199 l~~~~l~--i~G~--g~~~~~l~~---~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 271 (377)
.|+..+. +.|. |.....+++ ..-..++.|.|.++.++....|+.+|+++.|+.+.| |++.+|||+||+|||+
T Consensus 468 vP~s~L~l~~~g~~~g~~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~G-gtTtlEALwmGVPVVT 546 (631)
T 3q3e_A 468 AKVKVHFHFALGQSNGITHPYVERFIKSYLGDSATAHPHSPYHQYLRILHNCDMMVNPFPFGN-TNGIIDMVTLGLVGVC 546 (631)
T ss_dssp CSSEEEEEEEESSCCGGGHHHHHHHHHHHHGGGEEEECCCCHHHHHHHHHTCSEEECCSSSCC-SHHHHHHHHTTCCEEE
T ss_pred CCCcEEEEEecCCCchhhHHHHHHHHHcCCCccEEEcCCCCHHHHHHHHhcCcEEEeCCcccC-ChHHHHHHHcCCCEEe
Confidence 4776553 3563 233333222 222347999999999999999999999999987654 9999999999999999
Q ss_pred ecCCCCCcccccc---CCCCeeE-EeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-H--hcCHHHHHHHHHHHHHH
Q 017114 272 VRAGGIPDIIPED---QDGKIGY-LFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-E--KYDWRAATRTIRNEQYN 344 (377)
Q Consensus 272 ~~~~~~~~~~~~~---~~~~~g~-~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~--~~s~~~~~~~~~~~ly~ 344 (377)
.....+...+... .-|-.++ +.. |.+++++...++..|++.+++++++.++.. . -|+ ...+++. ..|+
T Consensus 547 l~G~~~asRvgaSlL~~~GLpE~LIA~--d~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd--~~~~~~e-~~ye 621 (631)
T 3q3e_A 547 KTGAEVHEHIDEGLFKRLGLPEWLIAN--TVDEYVERAVRLAENHQERLELRRYIIENNGLNTLFT--GDPRPMG-QVFL 621 (631)
T ss_dssp ECCSSHHHHHHHHHHHHTTCCGGGEES--SHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTC--SCCTHHH-HHHH
T ss_pred ccCCcHHHHhHHHHHHhcCCCcceecC--CHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcc--hhHHHHH-HHHH
Confidence 7655444332000 0122332 333 899999999999999999999999888774 2 244 5667776 5777
Q ss_pred HHHHHHH
Q 017114 345 AAIWFWR 351 (377)
Q Consensus 345 ~~~~~~~ 351 (377)
++++...
T Consensus 622 ~~~~~w~ 628 (631)
T 3q3e_A 622 EKLNAFL 628 (631)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 49
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.39 E-value=9.5e-12 Score=111.72 Aligned_cols=136 Identities=10% Similarity=0.066 Sum_probs=97.0
Q ss_pred CCCeEEEeeccc---ccccHHHHHHHHHhCCCceEEEE-ecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEe
Q 017114 173 DKPLIVHVGRLG---VEKSLDFLKRVMDRLPEARIAFI-GDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 248 (377)
Q Consensus 173 ~~~~i~~~G~~~---~~k~~~~l~~a~~~l~~~~l~i~-G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ 248 (377)
...++++.|+.. ..+.++.++++++.+ +.+++++ |.+... .. ....++.+.+++++ .++|..||++|.
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~-~~~~v~~~g~~~~~--~~--~~~~~v~~~~~~~~---~~ll~~~d~~v~ 308 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ-GRRVILSRGWTELV--LP--DDRDDCFAIDEVNF---QALFRRVAAVIH 308 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT-TCCEEEECTTTTCC--CS--CCCTTEEEESSCCH---HHHGGGSSEEEE
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC-CCeEEEEeCCcccc--cc--CCCCCEEEeccCCh---HHHhccCCEEEe
Confidence 356777888874 567788889999887 5677665 654321 11 11347999999974 456799999995
Q ss_pred ccCCcccchHHHHHHhcCCCeEEecCCC----CCccccccCCCCeeEEeCC--CCHHHHHHHHHHHhhCHHHHHHHHHHH
Q 017114 249 PSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQAA 322 (377)
Q Consensus 249 ps~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~~~~~~~~~~~~g~~~~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~ 322 (377)
.+..+++.||+++|+|+|+.+..+ ..+.+ ++.+.|..++. .+.++++++|.++ .|++.++++++.+
T Consensus 309 ----~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~~ 380 (416)
T 1rrv_A 309 ----HGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRV---AALGIGVAHDGPTPTFESLSAALTTV-LAPETRARAEAVA 380 (416)
T ss_dssp ----CCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHH---HHHTSEEECSSSCCCHHHHHHHHHHH-TSHHHHHHHHHHT
T ss_pred ----cCChhHHHHHHHcCCCEEEccCCCCcHHHHHHH---HHCCCccCCCCCCCCHHHHHHHHHHh-hCHHHHHHHHHHH
Confidence 344679999999999999876532 23344 44567777754 4789999999999 9987766665544
Q ss_pred HH
Q 017114 323 RQ 324 (377)
Q Consensus 323 ~~ 324 (377)
++
T Consensus 381 ~~ 382 (416)
T 1rrv_A 381 GM 382 (416)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 50
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.27 E-value=1.1e-10 Score=108.69 Aligned_cols=286 Identities=12% Similarity=0.105 Sum_probs=182.3
Q ss_pred CCCEEEeCCCchhHHHH-HHH------------H-HhhCCCEEEEeccCCcccccccccccchhh---------------
Q 017114 55 KPDIIHASSPGIMVFGA-LII------------A-KLLCVPIVMSYHTHVPVYIPRYTFSWLVKP--------------- 105 (377)
Q Consensus 55 ~pDii~~~~~~~~~~~~-~~~------------~-~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~--------------- 105 (377)
+||+||++++++..... ++- + ...+..+++|.|+..+.....+....+.+.
T Consensus 299 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~f 378 (796)
T 1l5w_A 299 DYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRF 378 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCCCSGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CccEEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCCcHhhhhcCCHHHHHHHhHHHHHHHhccCHHH
Confidence 69999999875543332 210 0 115788999999988765322211111000
Q ss_pred ------------------------HHHHHHHHHhcCCeeEecChhHHHHHHHh-----cccCCCcEEEecCCCCCCCC--
Q 017114 106 ------------------------MWLVIKFLHRAADLTLVPSVAIGKDLEAA-----RVTAANKIRIWKKGVDSESF-- 154 (377)
Q Consensus 106 ------------------------~~~~~~~~~~~~d~ii~~s~~~~~~~~~~-----~~~~~~~i~~i~~gv~~~~~-- 154 (377)
.-.+.+..+..++.|-.+|+...+.+++. +..-+.++.-+-||++...+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~ 458 (796)
T 1l5w_A 379 KTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIK 458 (796)
T ss_dssp HHHHHHHSTTCHHHHHHHCSEETTEEEHHHHHHHHSSEEEESSHHHHHHHHHTTSHHHHHHCGGGEEECCCCBCHHHHTT
T ss_pred HHHHHHhcCCcHHHHhhhhcccCCcccHHHHHHHhcCccccccHHHHHHHHhHHhhHHHHhCccccCCCcCCCcHHHhhc
Confidence 01245567788999999999999888642 22235689999999987666
Q ss_pred --CCc--------------------------cCc-----------hH--------HHHHhhCC-CCCCCeEEEeeccccc
Q 017114 155 --HPR--------------------------FRS-----------SE--------MRWRLSNG-EPDKPLIVHVGRLGVE 186 (377)
Q Consensus 155 --~~~--------------------------~~~-----------~~--------~~~~~~~~-~~~~~~i~~~G~~~~~ 186 (377)
.|. ..+ .. .+++.+.. .++.+.++++.|+..+
T Consensus 459 ~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eY 538 (796)
T 1l5w_A 459 QCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEY 538 (796)
T ss_dssp TTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGG
T ss_pred ccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhh
Confidence 221 111 00 01112222 3466889999999999
Q ss_pred ccHHH-HHHHHHhC-----------CCceEEEEecCc--cHHH------HHHhhc---C-------CCEEEccccCchhH
Q 017114 187 KSLDF-LKRVMDRL-----------PEARIAFIGDGP--YREE------LEKMFT---G-------MPAVFTGMLLGEEL 236 (377)
Q Consensus 187 k~~~~-l~~a~~~l-----------~~~~l~i~G~g~--~~~~------l~~~~~---~-------~~v~~~g~~~~~~~ 236 (377)
|+.++ ++..+..+ .++++++.|.+. +... +...+. . .+|.|.....-+-.
T Consensus 539 KRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA 618 (796)
T 1l5w_A 539 KRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAA 618 (796)
T ss_dssp GTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHH
T ss_pred cccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHH
Confidence 99999 77765544 258899999664 2222 222322 1 14778777765666
Q ss_pred HHHHhcCCEEEeccC--CcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHH------
Q 017114 237 SQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL------ 308 (377)
Q Consensus 237 ~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~------ 308 (377)
..++..||+.+.||. .|++|++=+-+|..|.+.|++-.|...|+.+. ...++|+++.. +++++.+.-...
T Consensus 619 ~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~-vG~~NgF~FG~-~~~ev~~l~~~~y~a~~~ 696 (796)
T 1l5w_A 619 EKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEK-VGEENIFIFGH-TVEQVKAILAKGYDPVKW 696 (796)
T ss_dssp HHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHH-HCGGGSEECSC-CHHHHHHHHHHCCCHHHH
T ss_pred HHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehhhc-cCCCcEEEecC-CHHHHHHHHHcccCHHHH
Confidence 788999999999999 99999999999999999998888887777621 13469999976 777766432221
Q ss_pred -hhCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 017114 309 -LYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 347 (377)
Q Consensus 309 -~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ly~~~~ 347 (377)
-.+++ .+++.+++.. ..|+|+.- +.+. .+|+.++
T Consensus 697 y~~~~~-~~~vvd~~~~--g~fs~~~~-~~y~-~Ly~~L~ 731 (796)
T 1l5w_A 697 RKKDKV-LDAVLKELES--GKYSDGDK-HAFD-QMLHSIG 731 (796)
T ss_dssp HHHCHH-HHHHHHHHHH--TTTTTTCT-TTTH-HHHHHTS
T ss_pred hhcCHH-HHHHHHHHHc--CCCCCCcH-HHHH-HHHHHHh
Confidence 12442 2222222221 35888764 5565 5777664
No 51
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.27 E-value=1.9e-11 Score=113.67 Aligned_cols=231 Identities=16% Similarity=0.117 Sum_probs=153.2
Q ss_pred HHHHHHhcCCeeEecChhHHHHHHHh-----cccCCCcEEEecCCCCCCCC----CCc----------------------
Q 017114 109 VIKFLHRAADLTLVPSVAIGKDLEAA-----RVTAANKIRIWKKGVDSESF----HPR---------------------- 157 (377)
Q Consensus 109 ~~~~~~~~~d~ii~~s~~~~~~~~~~-----~~~~~~~i~~i~~gv~~~~~----~~~---------------------- 157 (377)
+.+..+..++.|-++|+...+.+++. +...+.++.-+-||++...+ .|.
T Consensus 395 Ma~lai~~S~~VNgVS~lHae~ik~~~f~~~~~~~p~kf~~iTNGI~~rrWl~~~NP~l~~li~~~~g~~~w~~d~~~l~ 474 (796)
T 2c4m_A 395 MAWIACYAAYSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRMINPGLSDLLTRLSGSDDWVTDLDELK 474 (796)
T ss_dssp HHHHHHHHCSEEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCTTCHHHHHHHHHHHSSSGGGGCGGGGG
T ss_pred HHHHHHHhcCceeeccHHHHHHhhhhhhhhHHHcCccccccccCCcchHHhhcccCHhHHHHHHHhcCchhhhhChHHHH
Confidence 45567788999999999998888742 22335689999999999888 222
Q ss_pred -----cCch-------HH------------HHHhhC-CCCCCCeEEEeecccccccHHH-HHHHHHhC-----------C
Q 017114 158 -----FRSS-------EM------------RWRLSN-GEPDKPLIVHVGRLGVEKSLDF-LKRVMDRL-----------P 200 (377)
Q Consensus 158 -----~~~~-------~~------------~~~~~~-~~~~~~~i~~~G~~~~~k~~~~-l~~a~~~l-----------~ 200 (377)
..+. +. +++.+. ..++.+.++++.|+..+|+.++ ++..+..+ .
T Consensus 475 ~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~ 554 (796)
T 2c4m_A 475 KLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIP 554 (796)
T ss_dssp GGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSC
T ss_pred HHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCC
Confidence 0110 00 111111 2346788999999999999998 77765544 2
Q ss_pred CceEEEEecCc--cHHH------HHHhhc--------CC--CEEEccccCchhHHHHHhcCCEEEeccC--CcccchHHH
Q 017114 201 EARIAFIGDGP--YREE------LEKMFT--------GM--PAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVL 260 (377)
Q Consensus 201 ~~~l~i~G~g~--~~~~------l~~~~~--------~~--~v~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~ 260 (377)
++++++.|.+. +... +...+. .. +|.|.....-+-...++..||+.+.||. .|++|++=+
T Consensus 555 p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~nY~vslA~~I~~gaDv~l~~S~a~~EAsGTs~M 634 (796)
T 2c4m_A 555 ARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPAEHILPASDVSEQISTAGKEASGTSNM 634 (796)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCHHHH
T ss_pred CeEEEEEecCCHhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHH
Confidence 58899999664 2222 333322 11 4778777766667788999999999999 999999999
Q ss_pred HHHhcCCCeEEecCCCCCccccccCCCCeeEEeCC--CCHHHHHHH---HHHHhhCHHHHHHHHHHHHHHH--HhcCHHH
Q 017114 261 EAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP--GDLDDCLSK---LEPLLYNQELRETMGQAARQEM--EKYDWRA 333 (377)
Q Consensus 261 Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~l~~~---i~~~~~~~~~~~~~~~~~~~~~--~~~s~~~ 333 (377)
-+|..|.+.|++-.|...|+.+. ...++|+++.. .++.++..+ ....-.+++ .++ ..+.+ ..|+|+.
T Consensus 635 Kam~NGaL~iGtLDGanvEi~e~-vG~~NgF~FG~~~~ev~~l~~~y~a~~~y~~~~~-~~~----vvd~~~~g~fs~~~ 708 (796)
T 2c4m_A 635 KFMMNGALTLGTMDGANVEIVDS-VGEENAYIFGARVEELPALRESYKPYELYETVPG-LKR----ALDALDNGTLNDNN 708 (796)
T ss_dssp HHHHTTCEEEEESSTHHHHHHHH-HCGGGSEEESCCTTTHHHHHHTCCHHHHHHHSTT-HHH----HHHTTTSSSSCCTT
T ss_pred HHHHcCCeEEeccCCeEeehhhh-cCCCcEEEecCchhhHHHHHHhhChHHHhhcCHH-HHH----HHHHHHcCCCCCCC
Confidence 99999999998888877776521 12468999976 566665543 111112221 111 12222 2588866
Q ss_pred HHHHHHHHHHHHHH
Q 017114 334 ATRTIRNEQYNAAI 347 (377)
Q Consensus 334 ~~~~~~~~ly~~~~ 347 (377)
- +.+. .+|+.++
T Consensus 709 ~-~~y~-~Ly~~L~ 720 (796)
T 2c4m_A 709 S-GLFY-DLKHSLI 720 (796)
T ss_dssp C-CHHH-HHHHHHH
T ss_pred H-HHHH-HHHHHHH
Confidence 5 5566 5777775
No 52
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.22 E-value=5.2e-10 Score=104.50 Aligned_cols=191 Identities=14% Similarity=0.156 Sum_probs=132.9
Q ss_pred HHHHHHhcCCeeEecChhHHHHHHHh-----cccCCCcEEEecCCCCCCCC----CCcc---------------------
Q 017114 109 VIKFLHRAADLTLVPSVAIGKDLEAA-----RVTAANKIRIWKKGVDSESF----HPRF--------------------- 158 (377)
Q Consensus 109 ~~~~~~~~~d~ii~~s~~~~~~~~~~-----~~~~~~~i~~i~~gv~~~~~----~~~~--------------------- 158 (377)
+.+..+..++.|-.+|+...+.+++. +...+.++.-+-||++...+ .|..
T Consensus 430 Ma~lai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~ 509 (824)
T 2gj4_A 430 MAHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRK 509 (824)
T ss_dssp HHHHHHHTCSCEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGG
T ss_pred HHHHHHHhcCceeeEcHHHHHHHhhHHhHHHHHcChhhcccccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHH
Confidence 44567788999999999888887642 22235789999999998888 3311
Q ss_pred ----C-chHH-----------HHH--------hhC-CCCCCCeEEEeecccccccHHHH-HHHHHhC------C-----C
Q 017114 159 ----R-SSEM-----------RWR--------LSN-GEPDKPLIVHVGRLGVEKSLDFL-KRVMDRL------P-----E 201 (377)
Q Consensus 159 ----~-~~~~-----------~~~--------~~~-~~~~~~~i~~~G~~~~~k~~~~l-~~a~~~l------~-----~ 201 (377)
. +... +.+ .+. ..++.+.++++.|+..+|+.+++ +..+..+ | +
T Consensus 510 L~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p 589 (824)
T 2gj4_A 510 LLSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVP 589 (824)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCC
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCC
Confidence 0 0111 011 111 23467889999999999999887 6555444 2 4
Q ss_pred ceEEEEecCc--cHHH------HHHhhc--------CC--CEEEccccCchhHHHHHhcCCEEEeccC--CcccchHHHH
Q 017114 202 ARIAFIGDGP--YREE------LEKMFT--------GM--PAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLE 261 (377)
Q Consensus 202 ~~l~i~G~g~--~~~~------l~~~~~--------~~--~v~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~E 261 (377)
.++++.|.+. +... +...+. .. +|.|.....-+-...++..||+.++||. .|++|++=+-
T Consensus 590 ~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MK 669 (824)
T 2gj4_A 590 RTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMK 669 (824)
T ss_dssp EEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHH
T ss_pred EEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHH
Confidence 6899999664 2221 222222 11 5777777765666788999999999999 9999999999
Q ss_pred HHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHH
Q 017114 262 AMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDC 301 (377)
Q Consensus 262 a~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 301 (377)
+|..|.+.|++-.|...|+.++ ...++|+++... ++++
T Consensus 670 amlNGaLtigtlDGanvEi~e~-vG~~Ngf~FG~~-~~ev 707 (824)
T 2gj4_A 670 FMLNGALTIGTMDGANVEMAEE-AGEENFFIFGMR-VEDV 707 (824)
T ss_dssp HHHTTCEEEECSCTTHHHHHHH-HCGGGSEECSCC-HHHH
T ss_pred HHHcCceEEEEecCccchhhhc-cCCCCEEEeCCc-HHHH
Confidence 9999999999877776666511 145688999764 6666
No 53
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.91 E-value=4.2e-07 Score=86.63 Aligned_cols=177 Identities=10% Similarity=0.108 Sum_probs=124.8
Q ss_pred CCCCeEEEeeccccc--ccHHHHHHHHHhCCCceEEEEecCc-cHHHHHHhhcC-----CCEEEccccCchhHHHHHhcC
Q 017114 172 PDKPLIVHVGRLGVE--KSLDFLKRVMDRLPEARIAFIGDGP-YREELEKMFTG-----MPAVFTGMLLGEELSQAYASG 243 (377)
Q Consensus 172 ~~~~~i~~~G~~~~~--k~~~~l~~a~~~l~~~~l~i~G~g~-~~~~l~~~~~~-----~~v~~~g~~~~~~~~~~~~~a 243 (377)
++.++++++.++.+. .-++...++++..|+.+|.+..... ..+.+++.+.. .+|.|.+.++.++....++.+
T Consensus 521 ~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~~~ 600 (723)
T 4gyw_A 521 EDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQLA 600 (723)
T ss_dssp TTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGGGC
T ss_pred CCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCCCCHHHHHHHhCCC
Confidence 344555555554332 2245556777788999998887543 33444444332 369999999999999999999
Q ss_pred CEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCcccccc--CC-CCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHH
Q 017114 244 DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED--QD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQ 320 (377)
Q Consensus 244 di~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~--~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~ 320 (377)
|+++-|..+ +.+++.+||+.+|+|||+-....+..-+... .. |-..++ ..|.++..+...++..|++.+.++++
T Consensus 601 Di~LDt~p~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~i--a~~~~~Y~~~a~~la~d~~~l~~lr~ 677 (723)
T 4gyw_A 601 DVCLDTPLC-NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELI--AKNRQEYEDIAVKLGTDLEYLKKVRG 677 (723)
T ss_dssp SEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGB--CSSHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred eEEeCCCCc-CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999977654 4478999999999999976433322211000 00 111122 34889999999999999999999998
Q ss_pred HHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHh
Q 017114 321 AARQEMEK---YDWRAATRTIRNEQYNAAIWFWRK 352 (377)
Q Consensus 321 ~~~~~~~~---~s~~~~~~~~~~~ly~~~~~~~~~ 352 (377)
.-++.... |+...+++.++ ..|+++..++..
T Consensus 678 ~l~~~~~~s~l~d~~~~~~~le-~a~~~~w~r~~~ 711 (723)
T 4gyw_A 678 KVWKQRISSPLFNTKQYTMELE-RLYLQMWEHYAA 711 (723)
T ss_dssp HHHHHHHHSSTTCHHHHHHHHH-HHHHHHHHHHHT
T ss_pred HHHHHHHhCcCcCHHHHHHHHH-HHHHHHHHHHHc
Confidence 88777642 99999999998 799999887764
No 54
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=98.82 E-value=2.4e-06 Score=77.28 Aligned_cols=129 Identities=13% Similarity=0.102 Sum_probs=81.8
Q ss_pred CCCCCeEEEeeccc-cc--ccHHHHHHHHHhCCCceEEEE-ecC--ccHHHHHHhhc-CCCEEEccccCchhHHHHHh--
Q 017114 171 EPDKPLIVHVGRLG-VE--KSLDFLKRVMDRLPEARIAFI-GDG--PYREELEKMFT-GMPAVFTGMLLGEELSQAYA-- 241 (377)
Q Consensus 171 ~~~~~~i~~~G~~~-~~--k~~~~l~~a~~~l~~~~l~i~-G~g--~~~~~l~~~~~-~~~v~~~g~~~~~~~~~~~~-- 241 (377)
++...+++..|+.. .. ..+..++++++.. +.+++++ |.+ ...+.+.+... ..++.+.+|+|+. .+|.
T Consensus 274 ~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~v~~w~pq~---~vL~h~ 349 (463)
T 2acv_A 274 PDKSVVFLCFGSMGVSFGPSQIREIALGLKHS-GVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQV---EVLAHK 349 (463)
T ss_dssp CTTCEEEEECCSSCCCCCHHHHHHHHHHHHHH-TCEEEEECCCCGGGSCTTHHHHHHHHCSEEEESSCCHH---HHHHST
T ss_pred CCCceEEEEeccccccCCHHHHHHHHHHHHhC-CCcEEEEECCCcccCChhHHHhhccCCCEEEEccCCHH---HHhCCC
Confidence 34556677788776 22 2355666666654 5666654 433 11122222220 2377888899754 3565
Q ss_pred cCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCC----Ccc-ccccCCCCeeEEe-C-------CCCHHHHHHHHHHH
Q 017114 242 SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI----PDI-IPEDQDGKIGYLF-N-------PGDLDDCLSKLEPL 308 (377)
Q Consensus 242 ~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~----~~~-~~~~~~~~~g~~~-~-------~~~~~~l~~~i~~~ 308 (377)
.+|++| ..+..++++|++++|+|+|+....+- ... + +..+.|+.+ . .-+.+++.++|.++
T Consensus 350 ~~~~fv----th~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv---~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~l 422 (463)
T 2acv_A 350 AIGGFV----SHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLV---KEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDL 422 (463)
T ss_dssp TEEEEE----ECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHH---HTSCCEEESCSSCCTTCCCCCHHHHHHHHHHH
T ss_pred ccCeEE----ecCCchhHHHHHHcCCCeeeccchhhhHHHHHHHH---HHcCeEEEEecccCCCCccccHHHHHHHHHHH
Confidence 577777 34557899999999999998865322 222 3 456677777 2 23789999999999
Q ss_pred hh
Q 017114 309 LY 310 (377)
Q Consensus 309 ~~ 310 (377)
++
T Consensus 423 l~ 424 (463)
T 2acv_A 423 MD 424 (463)
T ss_dssp TC
T ss_pred Hh
Confidence 96
No 55
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.74 E-value=1.6e-07 Score=78.41 Aligned_cols=191 Identities=12% Similarity=0.064 Sum_probs=110.5
Q ss_pred hHHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEec
Q 017114 44 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 123 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 123 (377)
...+.+.+++.+||+|++.++....-....+....+.++++ +.|.. . . ..||.++-.
T Consensus 58 ~~~~~~~l~~~~~d~lIvD~Y~~~~~~~~~lk~~~~~~i~~-iDD~~-~---~------------------~~~Dllin~ 114 (282)
T 3hbm_A 58 IYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILS-FDDEI-K---P------------------HHCDILLNV 114 (282)
T ss_dssp HHHHHHHHHHHTCSEEEEECTTCCHHHHHHHHHHHCCEEEE-ECSSC-C---C------------------CCCSEEEEC
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHhcCcEEEE-EecCC-C---c------------------ccCCEEEeC
Confidence 35677888889999999987644332222222334676654 44431 0 0 248888887
Q ss_pred ChhHHH-HHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHh-hCCCCCCCeEEEeecccccccHHHHHHHHHhCCC
Q 017114 124 SVAIGK-DLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRL-SNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPE 201 (377)
Q Consensus 124 s~~~~~-~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~l~~ 201 (377)
+..... .+.. ..+....... |.+.-...+. +.... ......+.+++++|..++......+++++.....
T Consensus 115 ~~~~~~~~Y~~--~~p~~~~~l~--G~~Y~~lR~e-----F~~~~~~~r~~~~~ILv~~GG~d~~~l~~~vl~~L~~~~~ 185 (282)
T 3hbm_A 115 NAYAKASDYEG--LVPFKCEVRC--GFSYALIREE-----FYQEAKENRKKKYDFFICMGGTDIKNLSLQIASELPKTKI 185 (282)
T ss_dssp STTCCGGGGTT--TCC-CCEEEE--SGGGCCCCHH-----HHHHTTCCCCCCEEEEEECCSCCTTCHHHHHHHHSCTTSC
T ss_pred Ccccchhhccc--cCCCCCeEee--CCcccccCHH-----HHHhhhhccccCCeEEEEECCCchhhHHHHHHHHhhcCCC
Confidence 654321 1111 1122222222 3332222111 11110 0111233466788877766556666777655433
Q ss_pred ceEEEEecC-ccHHHHHHhhcC-CCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecC
Q 017114 202 ARIAFIGDG-PYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 274 (377)
Q Consensus 202 ~~l~i~G~g-~~~~~l~~~~~~-~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 274 (377)
-.++.|.+ +..+.+++.... .++.+.+++ +++.++|+.||++|.+. |+++.|++++|+|.|....
T Consensus 186 -i~vv~G~~~~~~~~l~~~~~~~~~v~v~~~~--~~m~~~m~~aDlvI~~g-----G~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 186 -ISIATSSSNPNLKKLQKFAKLHNNIRLFIDH--ENIAKLMNESNKLIISA-----SSLVNEALLLKANFKAICY 252 (282)
T ss_dssp -EEEEECTTCTTHHHHHHHHHTCSSEEEEESC--SCHHHHHHTEEEEEEES-----SHHHHHHHHTTCCEEEECC
T ss_pred -EEEEECCCchHHHHHHHHHhhCCCEEEEeCH--HHHHHHHHHCCEEEECC-----cHHHHHHHHcCCCEEEEeC
Confidence 33556755 345666665543 479999998 79999999999999742 5899999999999987643
No 56
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=98.72 E-value=3.3e-05 Score=70.23 Aligned_cols=144 Identities=13% Similarity=0.024 Sum_probs=86.0
Q ss_pred CCCCeEEEeecccc--cccHHHHHHHHHhCCCceEEEE-ecCc--------------c-----HHHHHHhhcCCCEEEcc
Q 017114 172 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFI-GDGP--------------Y-----REELEKMFTGMPAVFTG 229 (377)
Q Consensus 172 ~~~~~i~~~G~~~~--~k~~~~l~~a~~~l~~~~l~i~-G~g~--------------~-----~~~l~~~~~~~~v~~~g 229 (377)
+...+.+.+|+... ...+..++++++.. +.+++++ |.+. . .+.+.+..++.++.+.+
T Consensus 267 ~~~vvyvs~GS~~~~~~~~~~~~~~al~~~-~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~ 345 (480)
T 2vch_A 267 LGSVLYVSFGSGGTLTCEQLNELALGLADS-EQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPF 345 (480)
T ss_dssp TTCEEEEECTTTCCCCHHHHHHHHHHHHHT-TCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHTTTTEEEEES
T ss_pred CCceEEEecccccCCCHHHHHHHHHHHHhc-CCcEEEEECCccccccccccccccccchhhhcCHHHHHHhCCCeEEEeC
Confidence 35566777887742 23355666677665 5666654 3221 0 01111122233456667
Q ss_pred ccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCC----CCcc-ccccCCCCeeEEeCC-----CCHH
Q 017114 230 MLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDI-IPEDQDGKIGYLFNP-----GDLD 299 (377)
Q Consensus 230 ~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~~~-~~~~~~~~~g~~~~~-----~~~~ 299 (377)
|+|+. .+|+.+++.++-+ .+.-++++||+++|+|+|+....+ .... + +..+.|+.+.. -+.+
T Consensus 346 w~Pq~---~vL~h~~v~~fvt--HgG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~---~~~G~g~~l~~~~~~~~~~~ 417 (480)
T 2vch_A 346 WAPQA---QVLAHPSTGGFLT--HCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLS---EDIRAALRPRAGDDGLVRRE 417 (480)
T ss_dssp CCCHH---HHHHSTTEEEEEE--CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHH---HTTCCEECCCCCTTSCCCHH
T ss_pred ccCHH---HHhCCCCcCeEEe--cccchhHHHHHHcCCCEEeccccccchHHHHHHH---HHhCeEEEeecccCCccCHH
Confidence 99754 6788899644333 355689999999999999876542 1222 2 34566776653 3789
Q ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHH
Q 017114 300 DCLSKLEPLLYNQELRETMGQAARQE 325 (377)
Q Consensus 300 ~l~~~i~~~~~~~~~~~~~~~~~~~~ 325 (377)
+++++|.+++.++ .-..+++++++.
T Consensus 418 ~l~~av~~vl~~~-~~~~~r~~a~~l 442 (480)
T 2vch_A 418 EVARVVKGLMEGE-EGKGVRNKMKEL 442 (480)
T ss_dssp HHHHHHHHHHTST-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-chHHHHHHHHHH
Confidence 9999999999832 123344444444
No 57
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=98.62 E-value=3.6e-06 Score=75.96 Aligned_cols=144 Identities=13% Similarity=0.159 Sum_probs=91.1
Q ss_pred CCCCCeEEEeeccccc--ccHHHHHHHHHhCCCceEEE-EecCcc---HHHHHHhhcCCCEEEccccCchhHHHHHh--c
Q 017114 171 EPDKPLIVHVGRLGVE--KSLDFLKRVMDRLPEARIAF-IGDGPY---REELEKMFTGMPAVFTGMLLGEELSQAYA--S 242 (377)
Q Consensus 171 ~~~~~~i~~~G~~~~~--k~~~~l~~a~~~l~~~~l~i-~G~g~~---~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~ 242 (377)
++...+++..|+.... ..+..++++++.. +.++++ +|.... .+.+.+.. ..++.+.+|+|+. .+|. .
T Consensus 269 ~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~-~~~~lw~~~~~~~~~l~~~~~~~~-~~~~~v~~w~pq~---~vL~h~~ 343 (456)
T 2c1x_A 269 KPTSVVYISFGTVTTPPPAEVVALSEALEAS-RVPFIWSLRDKARVHLPEGFLEKT-RGYGMVVPWAPQA---EVLAHEA 343 (456)
T ss_dssp CTTCEEEEECCSSCCCCHHHHHHHHHHHHHH-TCCEEEECCGGGGGGSCTTHHHHH-TTTEEEESCCCHH---HHHTSTT
T ss_pred CCcceEEEecCccccCCHHHHHHHHHHHHhc-CCeEEEEECCcchhhCCHHHHhhc-CCceEEecCCCHH---HHhcCCc
Confidence 3455667778876533 2244555566554 566654 443221 11111111 3478888999764 5677 5
Q ss_pred CCEEEeccCCcccchHHHHHHhcCCCeEEecCCC----CCccccccCCC-CeeEEeCC--CCHHHHHHHHHHHhhCHHHH
Q 017114 243 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDG-KIGYLFNP--GDLDDCLSKLEPLLYNQELR 315 (377)
Q Consensus 243 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~----~~~~~~~~~~~-~~g~~~~~--~~~~~l~~~i~~~~~~~~~~ 315 (377)
+|++| ..+..++++||+++|+|+|+....+ ....+ .+. +.|..++. -+.+++.++|.++++|++ .
T Consensus 344 ~~~fv----th~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l---~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~~~-~ 415 (456)
T 2c1x_A 344 VGAFV----THCGWNSLWESVAGGVPLICRPFFGDQRLNGRMV---EDVLEIGVRIEGGVFTKSGLMSCFDQILSQEK-G 415 (456)
T ss_dssp EEEEE----ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HHTSCCEEECGGGSCCHHHHHHHHHHHHHSHH-H
T ss_pred CCEEE----ecCCcchHHHHHHhCceEEecCChhhHHHHHHHH---HHHhCeEEEecCCCcCHHHHHHHHHHHHCCCc-H
Confidence 67777 3455789999999999999876532 22333 344 67777653 368999999999999975 4
Q ss_pred HHHHHHHHHHHH
Q 017114 316 ETMGQAARQEME 327 (377)
Q Consensus 316 ~~~~~~~~~~~~ 327 (377)
+++++++++..+
T Consensus 416 ~~~r~~a~~l~~ 427 (456)
T 2c1x_A 416 KKLRENLRALRE 427 (456)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666666543
No 58
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=98.30 E-value=4.8e-05 Score=66.14 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=66.8
Q ss_pred CCCCeEEEeec-cccccc--HHHHHHHHHhC--CCceEEEEecCccHHHHHHhhcC------CC-EEEccccCchhHHHH
Q 017114 172 PDKPLIVHVGR-LGVEKS--LDFLKRVMDRL--PEARIAFIGDGPYREELEKMFTG------MP-AVFTGMLLGEELSQA 239 (377)
Q Consensus 172 ~~~~~i~~~G~-~~~~k~--~~~l~~a~~~l--~~~~l~i~G~g~~~~~l~~~~~~------~~-v~~~g~~~~~~~~~~ 239 (377)
+.+.+++..|. ..+.|. .+.+.++++.+ .++++++.|...+.+..++.... .+ +.+.|..+-.|+..+
T Consensus 179 ~~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~al 258 (348)
T 1psw_A 179 ERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVIL 258 (348)
T ss_dssp SSCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHH
T ss_pred CCcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHH
Confidence 34566777776 545555 34666666555 37899999876665555555432 13 467788888999999
Q ss_pred HhcCCEEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 240 YASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 240 ~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
++.||++|.... | .+-.|.|+|+|+|+-
T Consensus 259 i~~a~l~I~~Ds----g-~~HlAaa~g~P~v~l 286 (348)
T 1psw_A 259 IAACKAIVTNDS----G-LMHVAAALNRPLVAL 286 (348)
T ss_dssp HHTSSEEEEESS----H-HHHHHHHTTCCEEEE
T ss_pred HHhCCEEEecCC----H-HHHHHHHcCCCEEEE
Confidence 999999997642 3 344499999999975
No 59
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=98.27 E-value=5.1e-05 Score=67.99 Aligned_cols=203 Identities=13% Similarity=0.012 Sum_probs=111.5
Q ss_pred HHhcCCeeEecChhHHHH-HHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeeccccc--ccH
Q 017114 113 LHRAADLTLVPSVAIGKD-LEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE--KSL 189 (377)
Q Consensus 113 ~~~~~d~ii~~s~~~~~~-~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~--k~~ 189 (377)
....++.+++.|-...+. +.+.......++..|..-.....-.....+.+...-+...++...+.+..|+.... ..+
T Consensus 212 ~~~~~~~vl~ns~~eLE~~~~~~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~ 291 (454)
T 3hbf_A 212 ELPRANAVAINSFATIHPLIENELNSKFKLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHEL 291 (454)
T ss_dssp HGGGSSCEEESSCGGGCHHHHHHHHTTSSCEEECCCHHHHSCCSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHH
T ss_pred hhccCCEEEECChhHhCHHHHHHHHhcCCCEEEECCcccccccccccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHH
Confidence 346789999888654432 11111001124444432111000000111122333333333455667778876532 235
Q ss_pred HHHHHHHHhCCCceEEEEecCccHHHH----HHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhc
Q 017114 190 DFLKRVMDRLPEARIAFIGDGPYREEL----EKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSS 265 (377)
Q Consensus 190 ~~l~~a~~~l~~~~l~i~G~g~~~~~l----~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~ 265 (377)
..++++++.. +.+++++-.+...+.+ .+.. ..++.+.+|+|+. .+|+.+++.++-+ .+.-++++|++++
T Consensus 292 ~el~~~l~~~-~~~flw~~~~~~~~~lp~~~~~~~-~~~~~vv~w~Pq~---~vL~h~~v~~fvt--H~G~~S~~Eal~~ 364 (454)
T 3hbf_A 292 TALAESLEEC-GFPFIWSFRGDPKEKLPKGFLERT-KTKGKIVAWAPQV---EILKHSSVGVFLT--HSGWNSVLECIVG 364 (454)
T ss_dssp HHHHHHHHHH-CCCEEEECCSCHHHHSCTTHHHHT-TTTEEEESSCCHH---HHHHSTTEEEEEE--CCCHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCeEEEEeCCcchhcCCHhHHhhc-CCceEEEeeCCHH---HHHhhcCcCeEEe--cCCcchHHHHHHc
Confidence 5566666654 5666655433222111 1111 2478888999763 6788999544443 3456799999999
Q ss_pred CCCeEEecCCC----CCccccccCCC-CeeEEeCC--CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 017114 266 GIPVVGVRAGG----IPDIIPEDQDG-KIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQAARQEM 326 (377)
Q Consensus 266 G~PvI~~~~~~----~~~~~~~~~~~-~~g~~~~~--~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 326 (377)
|+|+|+....+ ....+ .+. +.|..+.. -+.+++.+++.+++++++ .+++++++++..
T Consensus 365 GvP~i~~P~~~DQ~~Na~~v---~~~~g~Gv~l~~~~~~~~~l~~av~~ll~~~~-~~~~r~~a~~l~ 428 (454)
T 3hbf_A 365 GVPMISRPFFGDQGLNTILT---ESVLEIGVGVDNGVLTKESIKKALELTMSSEK-GGIMRQKIVKLK 428 (454)
T ss_dssp TCCEEECCCSTTHHHHHHHH---HTTSCSEEECGGGSCCHHHHHHHHHHHHSSHH-HHHHHHHHHHHH
T ss_pred CCCEecCcccccHHHHHHHH---HHhhCeeEEecCCCCCHHHHHHHHHHHHCCCh-HHHHHHHHHHHH
Confidence 99999876532 22333 343 67777654 478999999999998853 345566655543
No 60
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.23 E-value=2.7e-05 Score=74.78 Aligned_cols=214 Identities=13% Similarity=0.016 Sum_probs=117.6
Q ss_pred HHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccC---chHHHHHhhCCCCCCCeEEEeeccccc--
Q 017114 112 FLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFR---SSEMRWRLSNGEPDKPLIVHVGRLGVE-- 186 (377)
Q Consensus 112 ~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~G~~~~~-- 186 (377)
...+..|.+++.|+...+.+.+.++.+..++.....+-....+..... ....+.++. .++++.+|+|.-++...
T Consensus 474 ~~~~~~D~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~~~~~~~~~-~~~~kk~ILyaPT~r~~~~ 552 (729)
T 3l7i_A 474 RETSRWDYLISPNRYSTEIFRSAFWMDEERILEIGYPRNDVLVNRANDQEYLDEIRTHLN-LPSDKKVIMYAPTWRDDEF 552 (729)
T ss_dssp HHHTTCSEEEESSHHHHHHHHHHTCCCGGGEEESCCGGGHHHHHSTTCHHHHHHHHHHTT-CCSSCEEEEECCCCCGGGC
T ss_pred HhhccCCEEEeCCHHHHHHHHHHhCCCcceEEEcCCCchHHHhcccchHHHHHHHHHHhC-CCCCCeEEEEeeeeeCCcc
Confidence 345678999999999999998887765556555443321112211111 122333443 24678899999877543
Q ss_pred -----------ccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhc----CCCEEEccccCchhHHHHHhcCCEEEeccC
Q 017114 187 -----------KSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSE 251 (377)
Q Consensus 187 -----------k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~----~~~v~~~g~~~~~~~~~~~~~adi~v~ps~ 251 (377)
..++.+.+.+. +++.+++-.. +. +..... ...+.... +..++.++|..||++|.-
T Consensus 553 ~~~~~~~~~~~~~~~~l~~~l~--~~~~li~r~H-p~---~~~~~~~~~~~~~~~~~~--~~~di~~ll~~aD~lITD-- 622 (729)
T 3l7i_A 553 VSKGKYLFELKIDLDNLYKELG--DDYVILLRMH-YL---ISNALDLSGYENFAIDVS--NYNDVSELFLISDCLITD-- 622 (729)
T ss_dssp CGGGSSCCCCTTCHHHHHHHHT--TTEEEEECCC-HH---HHTTCCCTTCTTTEEECT--TCSCHHHHHHTCSEEEES--
T ss_pred ccccccccchhhHHHHHHHHcC--CCeEEEEecC-cc---hhccccccccCCcEEeCC--CCcCHHHHHHHhCEEEee--
Confidence 12444444443 3565555442 21 111111 11232222 235899999999999943
Q ss_pred CcccchHHHHHHhcCCCeEEecCCCCCccc-------cccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Q 017114 252 SETLGLVVLEAMSSGIPVVGVRAGGIPDII-------PEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQ 324 (377)
Q Consensus 252 ~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~ 324 (377)
++..++|++.+++|||..... ..++. -...+.-.|.++. +.++|.++|.......+.+.+. ..+
T Consensus 623 ---ySSv~fD~~~l~kPiif~~~D-~~~Y~~~~rg~y~d~~~~~pg~~~~--~~~eL~~~i~~~~~~~~~~~~~---~~~ 693 (729)
T 3l7i_A 623 ---YSSVMFDYGILKRPQFFFAYD-IDKYDKGLRGFYMNYMEDLPGPIYT--EPYGLAKELKNLDKVQQQYQEK---IDA 693 (729)
T ss_dssp ---SCTHHHHHGGGCCCEEEECTT-TTTTTSSCCSBSSCTTSSSSSCEES--SHHHHHHHHTTHHHHHHHTHHH---HHH
T ss_pred ---chHHHHhHHhhCCCEEEecCC-HHHHhhccCCcccChhHhCCCCeEC--CHHHHHHHHhhhhccchhHHHH---HHH
Confidence 478999999999999976221 11111 0001222344544 8899999998876543333322 223
Q ss_pred HHHh---cCHHHHHHHHHHHHHHH
Q 017114 325 EMEK---YDWRAATRTIRNEQYNA 345 (377)
Q Consensus 325 ~~~~---~s~~~~~~~~~~~ly~~ 345 (377)
+.++ |.-...++++.+.+++.
T Consensus 694 ~~~~~~~~~dg~as~ri~~~i~~~ 717 (729)
T 3l7i_A 694 FYDRFCSVDNGKASQYIGDLIHKD 717 (729)
T ss_dssp HHHHHSTTCCSCHHHHHHHHHHHH
T ss_pred HHHHhCCccCChHHHHHHHHHHhc
Confidence 3332 33334555555555543
No 61
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=98.14 E-value=7.6e-05 Score=67.94 Aligned_cols=145 Identities=10% Similarity=0.074 Sum_probs=92.3
Q ss_pred CCCeEEEeecccc--cccHHHHHHHHHhCCCceEEEE-ecCc-------cHHHHHHhhcCCCEEEccccCchhHHHHHhc
Q 017114 173 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFI-GDGP-------YREELEKMFTGMPAVFTGMLLGEELSQAYAS 242 (377)
Q Consensus 173 ~~~~i~~~G~~~~--~k~~~~l~~a~~~l~~~~l~i~-G~g~-------~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~ 242 (377)
...+++..|+... ...+..++++++.. +.+++++ |... ..+.+.+.. ..++.+.+|+|+. .+|+.
T Consensus 295 ~~vv~vs~GS~~~~~~~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~v~~~~pq~---~~L~h 369 (482)
T 2pq6_A 295 GSVVYVNFGSTTVMTPEQLLEFAWGLANC-KKSFLWIIRPDLVIGGSVIFSSEFTNEI-ADRGLIASWCPQD---KVLNH 369 (482)
T ss_dssp TCEEEEECCSSSCCCHHHHHHHHHHHHHT-TCEEEEECCGGGSTTTGGGSCHHHHHHH-TTTEEEESCCCHH---HHHTS
T ss_pred CceEEEecCCcccCCHHHHHHHHHHHHhc-CCcEEEEEcCCccccccccCcHhHHHhc-CCCEEEEeecCHH---HHhcC
Confidence 4456677787642 22255666777665 5666654 4211 123333322 3478889999764 47877
Q ss_pred CCEEEeccCCcccchHHHHHHhcCCCeEEecCCCC----CccccccCCCCeeEEeC-CCCHHHHHHHHHHHhhCHHHHHH
Q 017114 243 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDGKIGYLFN-PGDLDDCLSKLEPLLYNQELRET 317 (377)
Q Consensus 243 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~----~~~~~~~~~~~~g~~~~-~~~~~~l~~~i~~~~~~~~~~~~ 317 (377)
+++.++- ..+..+++.|++++|+|+|+....+- ...+. ++.+.|+.+. .-+.+++.++|.++++|++ .++
T Consensus 370 ~~~~~~v--th~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~--~~~G~g~~l~~~~~~~~l~~~i~~ll~~~~-~~~ 444 (482)
T 2pq6_A 370 PSIGGFL--THCGWNSTTESICAGVPMLCWPFFADQPTDCRFIC--NEWEIGMEIDTNVKREELAKLINEVIAGDK-GKK 444 (482)
T ss_dssp TTEEEEE--ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHH--HTSCCEEECCSSCCHHHHHHHHHHHHTSHH-HHH
T ss_pred CCCCEEE--ecCCcchHHHHHHcCCCEEecCcccchHHHHHHHH--HHhCEEEEECCCCCHHHHHHHHHHHHcCCc-HHH
Confidence 6763332 24557899999999999999876432 22220 2456777765 2378999999999999886 366
Q ss_pred HHHHHHHHHH
Q 017114 318 MGQAARQEME 327 (377)
Q Consensus 318 ~~~~~~~~~~ 327 (377)
+++++++..+
T Consensus 445 ~r~~a~~l~~ 454 (482)
T 2pq6_A 445 MKQKAMELKK 454 (482)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766654
No 62
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.98 E-value=0.00052 Score=59.54 Aligned_cols=98 Identities=20% Similarity=0.279 Sum_probs=67.5
Q ss_pred CCCeEEEeeccccccc--HHHHHHHHHhC--CCceEEEEecCccHHHHHHhhcC---CCEEEccccCchhHHHHHhcCCE
Q 017114 173 DKPLIVHVGRLGVEKS--LDFLKRVMDRL--PEARIAFIGDGPYREELEKMFTG---MPAVFTGMLLGEELSQAYASGDV 245 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~--~~~l~~a~~~l--~~~~l~i~G~g~~~~~l~~~~~~---~~v~~~g~~~~~~~~~~~~~adi 245 (377)
.+.+++..|.-.+.|. .+.+.++++.+ .+.++++.|...+.+..++.... ..+.+.|..+-.|+..+++.||+
T Consensus 185 ~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~~ 264 (349)
T 3tov_A 185 DILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCNL 264 (349)
T ss_dssp CCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCSE
T ss_pred CCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCCE
Confidence 4456667776545554 35566655554 36888999976666655555433 23677888888999999999999
Q ss_pred EEeccCCcccchHHHHHHhcCCCeEEecCC
Q 017114 246 FVMPSESETLGLVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 246 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 275 (377)
+|..-. |..-+ |.++|+|+|+--.+
T Consensus 265 ~i~~Ds----G~~Hl-Aaa~g~P~v~lfg~ 289 (349)
T 3tov_A 265 LITNDS----GPMHV-GISQGVPIVALYGP 289 (349)
T ss_dssp EEEESS----HHHHH-HHTTTCCEEEECSS
T ss_pred EEECCC----CHHHH-HHhcCCCEEEEECC
Confidence 996532 44444 99999999976333
No 63
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=97.72 E-value=6.9e-05 Score=59.92 Aligned_cols=73 Identities=7% Similarity=-0.003 Sum_probs=51.5
Q ss_pred CEEEccccCchhHHHHHh-cCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCC--------CccccccCCCCeeEEeC
Q 017114 224 PAVFTGMLLGEELSQAYA-SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI--------PDIIPEDQDGKIGYLFN 294 (377)
Q Consensus 224 ~v~~~g~~~~~~~~~~~~-~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~--------~~~~~~~~~~~~g~~~~ 294 (377)
++...+++ +++..+|. .||++| ..+..++++|++++|+|.|.-..+.. .+.+ .+.+.++.+
T Consensus 115 ~v~v~~f~--~~m~~~l~~~AdlvI----shaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l---~~~G~~~~~- 184 (224)
T 2jzc_A 115 KVIGFDFS--TKMQSIIRDYSDLVI----SHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKF---VELGYVWSC- 184 (224)
T ss_dssp EEEECCSS--SSHHHHHHHHCSCEE----ESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHH---HHHSCCCEE-
T ss_pred eEEEeecc--chHHHHHHhcCCEEE----ECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHH---HHCCCEEEc-
Confidence 45666777 78999999 999999 44557899999999999988765421 2233 233344444
Q ss_pred CCCHHHHHHHHHHH
Q 017114 295 PGDLDDCLSKLEPL 308 (377)
Q Consensus 295 ~~~~~~l~~~i~~~ 308 (377)
+++.+.++|.++
T Consensus 185 --~~~~L~~~i~~l 196 (224)
T 2jzc_A 185 --APTETGLIAGLR 196 (224)
T ss_dssp --CSCTTTHHHHHH
T ss_pred --CHHHHHHHHHHH
Confidence 556677777665
No 64
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=96.98 E-value=0.031 Score=47.78 Aligned_cols=134 Identities=13% Similarity=0.094 Sum_probs=79.5
Q ss_pred CCCeEEEeeccccccc--HHHHHHHHHhC--CCceEEEE-ecCccHHHHHHhhcC-CCEEEccccCchhHHHHHhcCCEE
Q 017114 173 DKPLIVHVGRLGVEKS--LDFLKRVMDRL--PEARIAFI-GDGPYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVF 246 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~--~~~l~~a~~~l--~~~~l~i~-G~g~~~~~l~~~~~~-~~v~~~g~~~~~~~~~~~~~adi~ 246 (377)
.+.+++..|.-.+.|. .+.+.++++.+ .++++++. |...+.+..++.... .++.+.|..+-.|+..+++.||++
T Consensus 178 ~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~~~~~~l~g~~sl~el~ali~~a~l~ 257 (326)
T 2gt1_A 178 GEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKFV 257 (326)
T ss_dssp TSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTTCTTEEECCCCCHHHHHHHHHTCSEE
T ss_pred CCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhhCCcccccCCCCHHHHHHHHHhCCEE
Confidence 4456667776555565 45777777776 46788887 533333344444432 256778888889999999999999
Q ss_pred EeccCCcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeE-----EeCCCCHHHHHHHHHHHhhC
Q 017114 247 VMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGY-----LFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 247 v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~l~~~i~~~~~~ 311 (377)
|..-. |..=+ |.|+|+|+|+--.+..+.......+....+ ....-++++..+++.+++++
T Consensus 258 I~~DS----G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~cm~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 258 VSVDT----GLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EEESS----HHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGGCGGGCCHHHHHHHHHHTTTT
T ss_pred EecCC----cHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcccccCCCHHHHHHHHHHHHHH
Confidence 96632 44444 778999999753222222110001110101 11223677777777777653
No 65
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=95.86 E-value=0.07 Score=50.54 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=84.3
Q ss_pred CCCCeEEEeecccccccHHH-HHHHHH-------h-------------CCCceEEEEecCc----cHHHHHHh-------
Q 017114 172 PDKPLIVHVGRLGVEKSLDF-LKRVMD-------R-------------LPEARIAFIGDGP----YREELEKM------- 219 (377)
Q Consensus 172 ~~~~~i~~~G~~~~~k~~~~-l~~a~~-------~-------------l~~~~l~i~G~g~----~~~~l~~~------- 219 (377)
++...++++-|+..+|...+ ++..+. . ..+.++++.|... ..+.+.++
T Consensus 598 p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~ 677 (879)
T 1ygp_A 598 DDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADI 677 (879)
T ss_dssp GGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHH
Confidence 45678888999999998766 443322 2 2357777777432 11222111
Q ss_pred hcCC-------CEEEccccCchhHHHHHhcCCEEEeccC--CcccchHHHHHHhcCCCeEEecCCCCCccccccCCCCee
Q 017114 220 FTGM-------PAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIG 290 (377)
Q Consensus 220 ~~~~-------~v~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g 290 (377)
+..+ +|.|++...-+-...++.+||+-...|. .|+.|++=+-+|..|.+.|++-.|..-|+.++ ...+++
T Consensus 678 iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~-vG~eN~ 756 (879)
T 1ygp_A 678 VNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITRE-IGEDNV 756 (879)
T ss_dssp HTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHH-HCGGGS
T ss_pred hccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHH-cCcccE
Confidence 1111 4888887765666788999999998776 69999999999999999999988887777621 124467
Q ss_pred EEeCC
Q 017114 291 YLFNP 295 (377)
Q Consensus 291 ~~~~~ 295 (377)
+++..
T Consensus 757 fiFG~ 761 (879)
T 1ygp_A 757 FLFGN 761 (879)
T ss_dssp EEESC
T ss_pred EEccC
Confidence 77653
No 66
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=95.82 E-value=0.46 Score=36.62 Aligned_cols=304 Identities=15% Similarity=0.139 Sum_probs=159.3
Q ss_pred CCcEEEEEeeCCCCCccccCceeecccCCCCCccccccccccchHHHHHHHHhcCCCEEEeCCCchhH-----HH---HH
Q 017114 1 MGDEVMVVTTHEGVPQEFYGAKLIGSRSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMV-----FG---AL 72 (377)
Q Consensus 1 ~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~pDii~~~~~~~~~-----~~---~~ 72 (377)
.||+|+++...+........ +.-..+..| .....-+.+..+++. ++|++++++.+... +. .+
T Consensus 31 nghevtlvyakdksftrtss---hdhksfsip-----vilakeydkalklvn--dcdiliinsvpatsvqeatinnykkl 100 (401)
T 1xv5_A 31 NGHEVTLVYAKDKSFTRTSS---HDHKSFSIP-----VILAKEYDKALKLVN--DCDILIINSVPATSVQEATINNYKKL 100 (401)
T ss_dssp TTCEEEEEEECSSCCTTTTS---SSCTTTCEE-----ECTTTCHHHHHHHHT--SCSEEEEEECCBTTSCHHHHHHHHHH
T ss_pred CCcEEEEEEecccccccccc---ccCccccce-----eEehhhhHHHhhhhc--cCcEEEEccCccchhHHHHHhhHHHH
Confidence 49999999887653321111 000111111 011222334445543 78998887543221 11 11
Q ss_pred HHHHhhCCCEEEEeccCCcccccccccccchhhHHHHHHHHHhcCCeeEecChhH---HHHHHHhcccCCCcEEEec---
Q 017114 73 IIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAI---GKDLEAARVTAANKIRIWK--- 146 (377)
Q Consensus 73 ~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~---~~~~~~~~~~~~~~i~~i~--- 146 (377)
+-.....+.+++.-||+......... -..-..++||.++..|+.- +-.+++.++ +.+....
T Consensus 101 ldnikpsirvvvyqhdhsvlslrrnl----------gleetvrradvifshsdngdfnkvlmkewyp---etvslfddie 167 (401)
T 1xv5_A 101 LDNIKPSIRVVVYQHDHSVLSLRRNL----------GLEETVRRADVIFSHSDNGDFNKVLMKEWYP---ETVSLFDDIE 167 (401)
T ss_dssp HHHSCTTSEEEEEECCCSHHHHTTBS----------SHHHHHHHCSEEEESCTTSHHHHTHHHHHSC---SSCCSSSCCC
T ss_pred HhcCCCceEEEEEeccchhhhhhhhc----------ChHHhhhhhceEEecCCCCcHHHHHHHhhcc---chhhhhcchh
Confidence 11122457789999997543222111 1234568899999988642 223444443 1111111
Q ss_pred CCCCCCCCCCccCchHHHHHhhCCCCCCC---eEEEeecccccccHHHHHHHHHhC--CC-ceEEEEecCccHHHHHHhh
Q 017114 147 KGVDSESFHPRFRSSEMRWRLSNGEPDKP---LIVHVGRLGVEKSLDFLKRVMDRL--PE-ARIAFIGDGPYREELEKMF 220 (377)
Q Consensus 147 ~gv~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~G~~~~~k~~~~l~~a~~~l--~~-~~l~i~G~g~~~~~l~~~~ 220 (377)
.....-.|.|+..-...+..+ ...-..+ +--++|+-..+||.-.+.+.-+++ |. -.-++-|-......+.-.-
T Consensus 168 eaptvynfqppmdivkvrsty-wkdvseinmninrwigrtttwkgfyqmfdfhekflkpagkstvmeglerspafiaike 246 (401)
T 1xv5_A 168 EAPTVYNFQPPMDIVKVRSTY-WKDVSEINMNINRWIGRTTTWKGFYQMFDFHEKFLKPAGKSTVMEGLERSPAFIAIKE 246 (401)
T ss_dssp CCCCEEECCCCBCHHHHHHHH-CCCGGGCEEEEEEEECCSCGGGCHHHHHHHHHHTTTTTTCEEEEECCCCSHHHHHHHH
T ss_pred hCCceeccCCCceeeeeehhh-hccHHHhhcchhhhhcccchhHhHHHHhhHHHHhcCccchhhhhhhhhcCCceEEEcc
Confidence 000011233332222222222 1111222 334899999999998888877766 32 2334444222221111111
Q ss_pred cCCC-------------------EEEccccCchhHHHHHhcCCEEEeccC------CcccchHHHHHHhcCCCeEEec--
Q 017114 221 TGMP-------------------AVFTGMLLGEELSQAYASGDVFVMPSE------SETLGLVVLEAMSSGIPVVGVR-- 273 (377)
Q Consensus 221 ~~~~-------------------v~~~g~~~~~~~~~~~~~adi~v~ps~------~e~~~~~~~Ea~a~G~PvI~~~-- 273 (377)
+... ..++.-.-+.|+.+-|+.+-+....|. ..+.-.+-+|--|||+-.|-..
T Consensus 247 kgipyeyygnreidkmnlapnqpaqildcyinsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkst 326 (401)
T 1xv5_A 247 KGIPYEYYGNREIDKMNLAPNQPAQILDCYINSEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKST 326 (401)
T ss_dssp TTCCEEEECGGGGGGCCCSSSCCEEEESCCCHHHHHHHHHTEEEEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHH
T ss_pred cCCchhhcCcchhhhhcCCCCCcchhhhheecHHHHHHhhhcCcccchHHHHHHHHHhhhhhheeecccccceeeeeccc
Confidence 1111 233333334577777888777766553 2355678899999997655432
Q ss_pred -------CCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHH-HhcCHH
Q 017114 274 -------AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWR 332 (377)
Q Consensus 274 -------~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~s~~ 332 (377)
+...+ +. .+...-+.++.+|.++-.+.|.++-.|..++.+-+++|.++. ++-+..
T Consensus 327 genlkfrvdntp-lt---shdsgiiwfdendmestferikelssdralydrerekayeflyqhqdss 389 (401)
T 1xv5_A 327 GENLKFRVDNTP-LT---SHDSGIIWFDENDMESTFERIKELSSDRALYDREREKAYEFLYQHQDSS 389 (401)
T ss_dssp HHHSBCTTTCCB-GG---GSCCSCEEECTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHBHH
T ss_pred CcceEEEecCCc-cc---ccCCceEEecCCchHHHHHHHHHhccchhhhhHHHHHHHHHHHhccccc
Confidence 12222 12 223334667888999999999999999999999888888876 443333
No 67
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=89.63 E-value=2.7 Score=30.89 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=41.6
Q ss_pred HHHHhcCCEEEeccCCcccchHHHH---HHhcCCCeEEecCC----CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 237 SQAYASGDVFVMPSESETLGLVVLE---AMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 237 ~~~~~~adi~v~ps~~e~~~~~~~E---a~a~G~PvI~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
...+..||++|.--. +.-+.+.+| |.+.|+||++--.+ ....++....++..-.+....+ +++.+.|.+++
T Consensus 63 ~~~i~~aD~vvA~l~-~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~~-~el~~il~~f~ 140 (152)
T 4fyk_A 63 LNWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAE-GEVETMLDRYF 140 (152)
T ss_dssp HHHHHHCSEEEEECS-SCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECCT-TCHHHHHHHHH
T ss_pred HHHHHHCCEEEEeCC-CCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEEEecH-HHHHHHHHHHH
Confidence 467999999987543 333444444 78999999983221 2332331112222233334445 78888888776
Q ss_pred hC
Q 017114 310 YN 311 (377)
Q Consensus 310 ~~ 311 (377)
++
T Consensus 141 ~~ 142 (152)
T 4fyk_A 141 EA 142 (152)
T ss_dssp C-
T ss_pred Hh
Confidence 53
No 68
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=87.58 E-value=4.1 Score=35.01 Aligned_cols=82 Identities=7% Similarity=-0.045 Sum_probs=56.6
Q ss_pred hhHHHHHhcCCEEEeccC--C-cccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEe-CCCCHHHHHHHHHHHh
Q 017114 234 EELSQAYASGDVFVMPSE--S-ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLF-NPGDLDDCLSKLEPLL 309 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~--~-e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~l~~~i~~~~ 309 (377)
.+..++++...+.+..-. . +-..-++.+|+.+|+-.|....+...+++ . .+.-+-+ +..++++|++.|..+-
T Consensus 223 ~~~~~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~VPI~~G~~~~~~~~---P-p~SfI~~~dF~s~~~La~yL~~L~ 298 (371)
T 2nzw_A 223 KNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDF---N-PKSFVNVHDFKNFDEAIDYIKYLH 298 (371)
T ss_dssp SCHHHHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEESCTTGGGTS---C-GGGSEEGGGSSSHHHHHHHHHHHH
T ss_pred ccHHHHHhcCcEEEEEeccCCCCcccHHHHHHHhCCeEEEEECCCchhhhC---C-CCceEEcccCCCHHHHHHHHHHHh
Confidence 456677888888776532 2 33467999999999765655555566666 2 2222233 4568999999999999
Q ss_pred hCHHHHHHHH
Q 017114 310 YNQELRETMG 319 (377)
Q Consensus 310 ~~~~~~~~~~ 319 (377)
+|++.+.+.-
T Consensus 299 ~n~~~Y~~y~ 308 (371)
T 2nzw_A 299 THKNAYLDML 308 (371)
T ss_dssp TCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 9998887654
No 69
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=84.92 E-value=6.7 Score=27.89 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=62.6
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHh----cCCEEEeccC-CcccchHHHHHHh---cCCCeEEe
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA----SGDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV 272 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~----~adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~~ 272 (377)
.+++|+.+.+ ..+.+.......+......-+.++....+. ..|++++-.. .+.-|..+++.+. ..+|+|..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 83 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIIL 83 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEE
Confidence 4566666543 334444444433333333333355555554 4688777543 2334555555543 35777654
Q ss_pred -cCCC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCH
Q 017114 273 -RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 312 (377)
Q Consensus 273 -~~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 312 (377)
.... ..+.+ ..+..+++..|.+.+++..+|..++...
T Consensus 84 s~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 84 TGHGDLDNAILAM---KEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143)
T ss_dssp ECTTCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHH---HhCcceeEeCCCCHHHHHHHHHHHHHHH
Confidence 3332 22334 5677889999999999999999887643
No 70
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=84.45 E-value=1.1 Score=34.62 Aligned_cols=70 Identities=21% Similarity=0.302 Sum_probs=40.6
Q ss_pred HHHHhcCCEEEeccCCcccch--HHHHHHhcCCCeEEecCCCC-Ccccccc-------CCCCeeEEeCCCCHHHHHHHHH
Q 017114 237 SQAYASGDVFVMPSESETLGL--VVLEAMSSGIPVVGVRAGGI-PDIIPED-------QDGKIGYLFNPGDLDDCLSKLE 306 (377)
Q Consensus 237 ~~~~~~adi~v~ps~~e~~~~--~~~Ea~a~G~PvI~~~~~~~-~~~~~~~-------~~~~~g~~~~~~~~~~l~~~i~ 306 (377)
.-+...||++|... .++|+ .++|++..|+||++-+..+. ...+... .......+.-.+|++++.+.|.
T Consensus 113 ~~m~~~sda~Ivlp--GG~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~l~ 190 (195)
T 1rcu_A 113 FVLLRNADVVVSIG--GEIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQIIE 190 (195)
T ss_dssp HHHHTTCSEEEEES--CCHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHHHHH
T ss_pred HHHHHhCCEEEEec--CCCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHHHH
Confidence 34566788877643 23443 58899999999999864432 2111000 1112222333458899888876
Q ss_pred HH
Q 017114 307 PL 308 (377)
Q Consensus 307 ~~ 308 (377)
++
T Consensus 191 ~~ 192 (195)
T 1rcu_A 191 QI 192 (195)
T ss_dssp TC
T ss_pred HH
Confidence 54
No 71
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=83.92 E-value=9.4 Score=27.05 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=62.9
Q ss_pred CceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc---CCEEEeccCC-c-ccchHHHHHHh--cCCCeEEe
Q 017114 201 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSES-E-TLGLVVLEAMS--SGIPVVGV 272 (377)
Q Consensus 201 ~~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~---adi~v~ps~~-e-~~~~~~~Ea~a--~G~PvI~~ 272 (377)
+.+++|+.+.+ ..+.+.......+......-+.++....+.. .|++++-... + .-|..+++.+. ..+|+|..
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~l 84 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFL 84 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 34666666543 2344444444444333333344566555543 5887775443 3 34555665554 46787754
Q ss_pred c-CC---CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 273 R-AG---GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 273 ~-~~---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
. .. ...+.+ ..+..+++..|.+.+++.++|..++.
T Consensus 85 s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 85 TAHTEPAVVEKIR---SVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp ESSSSCCCCGGGG---GSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHH---hCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 2 22 223344 55778899999999999999988865
No 72
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=82.35 E-value=10 Score=26.73 Aligned_cols=107 Identities=14% Similarity=0.165 Sum_probs=58.6
Q ss_pred CceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHhc-----CCCeEE
Q 017114 201 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVG 271 (377)
Q Consensus 201 ~~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~ 271 (377)
..+++++.+.+ ..+.+.......++.+...-+.++....+.. .|++++-.. .+.-|..+++.+.. .+|||.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 86 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVM 86 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEE
Confidence 34556665443 2233344333333333222233455555544 466666433 23345667777654 467664
Q ss_pred e-cCC---CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 272 V-RAG---GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 272 ~-~~~---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
. ... ...+.+ ..+-.+++..|.+.+++.++|..++.
T Consensus 87 ~s~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 87 LTAKNAPDAKMIGL---QEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp EECTTCCCCSSTTG---GGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHH---hcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 3 322 223333 44667889999999999999988764
No 73
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=81.06 E-value=7.8 Score=28.24 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=41.2
Q ss_pred CCEEEeccC-CcccchHHHHHHh---cCCCeEEecC-CCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 243 GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVRA-GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 243 adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~~~~-~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.|++++-.. .+.-|..+++.+. ..+|||.... ... .+.+ ..+..+++..|.+.+++.++|..++.
T Consensus 84 ~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 84 IDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCL---IKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp CCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred CCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHH---HcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 477776543 2333555555543 4677775432 222 2233 55677899999999999999988764
No 74
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=80.88 E-value=13 Score=26.90 Aligned_cols=107 Identities=14% Similarity=0.210 Sum_probs=57.1
Q ss_pred eEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccCC-cccchHHHHHHh---cCCCeEEec-C
Q 017114 203 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGVR-A 274 (377)
Q Consensus 203 ~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~~~-~ 274 (377)
+++|+.+.+ ....+.......+..+...-+.++....+. ..|++++-... +.-|..+++.+. .++|+|... .
T Consensus 5 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~ 84 (155)
T 1qkk_A 5 SVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGH 84 (155)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECG
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECC
Confidence 455555433 223333333333333222222244444433 25777764432 233455555553 467877542 2
Q ss_pred CC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCH
Q 017114 275 GG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 312 (377)
Q Consensus 275 ~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 312 (377)
.. ..+.+ ..+..+++..|.+.+++.+++..++...
T Consensus 85 ~~~~~~~~~~---~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 122 (155)
T 1qkk_A 85 GDIPMAVQAI---QDGAYDFIAKPFAADRLVQSARRAEEKR 122 (155)
T ss_dssp GGHHHHHHHH---HTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHH---hcCCCeEEeCCCCHHHHHHHHHHHHHHH
Confidence 22 22333 4567789999999999999999887643
No 75
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=80.84 E-value=7.8 Score=27.70 Aligned_cols=107 Identities=10% Similarity=0.121 Sum_probs=61.0
Q ss_pred CceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccC-CcccchHHHHHHhc-----CCCeEE
Q 017114 201 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSS-----GIPVVG 271 (377)
Q Consensus 201 ~~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~ 271 (377)
..+++++.+.+ ..+.+.......+..+...-+.++....+. ..|++++-.. .+.-|..+++.+.. ++|||.
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 87 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIA 87 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEE
Confidence 35566666443 334444444333333332223345444443 3688777543 23346677777654 577775
Q ss_pred e-cCCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 272 V-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 272 ~-~~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
. ..... .+.+ ..+..+++..|.+.+++.++|..++.
T Consensus 88 ls~~~~~~~~~~~~---~~g~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 88 LSGRATAKEEAQLL---DMGFIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp EESSCCHHHHHHHH---HHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHH---hCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 4 33322 2223 44667899999999999999988875
No 76
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=80.49 E-value=13 Score=26.77 Aligned_cols=108 Identities=13% Similarity=0.138 Sum_probs=61.2
Q ss_pred ceEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhc---CCEEEeccC-CcccchHHHHHHh---cCCCeEEe-
Q 017114 202 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV- 272 (377)
Q Consensus 202 ~~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~---adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~~- 272 (377)
.+++|+.+.+. .+.+...... +..+...-+.++....+.. .|++++-.. .+.-|..+++.+. ...|+|..
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 83 (151)
T 3kcn_A 5 ERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLT 83 (151)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEE
Confidence 45666765442 3344444433 3333333333555555543 388777543 3334555655543 35677643
Q ss_pred cCCC---CCccccccCCC-CeeEEeCCCCHHHHHHHHHHHhhCHH
Q 017114 273 RAGG---IPDIIPEDQDG-KIGYLFNPGDLDDCLSKLEPLLYNQE 313 (377)
Q Consensus 273 ~~~~---~~~~~~~~~~~-~~g~~~~~~~~~~l~~~i~~~~~~~~ 313 (377)
.... ..+.+ ..+ ..+++..|.+.+++.++|..++....
T Consensus 84 ~~~~~~~~~~~~---~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 84 GNQDLTTAMEAV---NEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp CGGGHHHHHHHH---HHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH---HcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 2222 22233 345 56899999999999999999876543
No 77
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=80.39 E-value=2.1 Score=35.15 Aligned_cols=97 Identities=14% Similarity=0.085 Sum_probs=54.9
Q ss_pred CeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccH----HHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEecc
Q 017114 175 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYR----EELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 250 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~----~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps 250 (377)
..|+.+|.. .+--..+++++...++++++-+-+.... ....++. .+.- |..-.+++.+++..+|++|-.+
T Consensus 8 ikV~V~Ga~--G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~---g~~~-gv~v~~dl~~ll~~~DVVIDfT 81 (272)
T 4f3y_A 8 MKIAIAGAS--GRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFL---GKQT-GVALTDDIERVCAEADYLIDFT 81 (272)
T ss_dssp EEEEESSTT--SHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTT---TCCC-SCBCBCCHHHHHHHCSEEEECS
T ss_pred cEEEEECCC--CHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHh---CCCC-CceecCCHHHHhcCCCEEEEcC
Confidence 445555522 2224567777777777776543221100 0000111 1111 2222367778888999999776
Q ss_pred CCcccchHHHHHHhcCCCeEEecCCCC
Q 017114 251 ESETLGLVVLEAMSSGIPVVGVRAGGI 277 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~~~~~~~ 277 (377)
..+..-.-+..++..|+|+|+...|..
T Consensus 82 ~p~a~~~~~~~al~~G~~vVigTTG~s 108 (272)
T 4f3y_A 82 LPEGTLVHLDAALRHDVKLVIGTTGFS 108 (272)
T ss_dssp CHHHHHHHHHHHHHHTCEEEECCCCCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 655444556778999999998766543
No 78
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=80.24 E-value=2.7 Score=34.78 Aligned_cols=99 Identities=11% Similarity=0.050 Sum_probs=53.9
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccH----HHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEe
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYR----EELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 248 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~----~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ 248 (377)
....|+..|.. .+--..+++++...++++|+-+-+.... ..+.+++ .+.-.|..-..++.+++..+|++|-
T Consensus 20 ~~irV~V~Ga~--GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~---G~~~~gv~v~~dl~~ll~~aDVvID 94 (288)
T 3ijp_A 20 GSMRLTVVGAN--GRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILI---GSDFLGVRITDDPESAFSNTEGILD 94 (288)
T ss_dssp -CEEEEESSTT--SHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGT---TCSCCSCBCBSCHHHHTTSCSEEEE
T ss_pred CCeEEEEECCC--CHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhh---ccCcCCceeeCCHHHHhcCCCEEEE
Confidence 34556666522 2223567777777777766543222110 0011111 0111222222577778889999996
Q ss_pred ccCCcccchHHHHHHhcCCCeEEecCCC
Q 017114 249 PSESETLGLVVLEAMSSGIPVVGVRAGG 276 (377)
Q Consensus 249 ps~~e~~~~~~~Ea~a~G~PvI~~~~~~ 276 (377)
-+..+..-.-+..++..|+|+|+...|.
T Consensus 95 FT~p~a~~~~~~~~l~~Gv~vViGTTG~ 122 (288)
T 3ijp_A 95 FSQPQASVLYANYAAQKSLIHIIGTTGF 122 (288)
T ss_dssp CSCHHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 6654444444667889999999866654
No 79
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=79.74 E-value=13 Score=25.79 Aligned_cols=109 Identities=16% Similarity=0.107 Sum_probs=59.4
Q ss_pred CceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc---CCEEEeccCC-c-ccchHHHHHHh---cCCCeEE
Q 017114 201 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSES-E-TLGLVVLEAMS---SGIPVVG 271 (377)
Q Consensus 201 ~~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~---adi~v~ps~~-e-~~~~~~~Ea~a---~G~PvI~ 271 (377)
..+++|+.+.+ ..+.+.......+......-+.++....+.. .|++++-... + .-|..+++.+. ..+|+|.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~ 84 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVY 84 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 45666776544 2334444444333333333333555555543 5777765432 2 34555666553 3678775
Q ss_pred e-cCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 272 V-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 272 ~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
. ......... ..... .+++..|.+.+++.++|..++..
T Consensus 85 ~s~~~~~~~~~-~~~~~-~~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 85 ISGHAALEWAS-NGVPD-SIILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp EESSCCTTHHH-HSCTT-CEEEESSCCHHHHHHHHHHHHHT
T ss_pred EeCCccHHHHH-hhcCC-cceEeCCCCHHHHHHHHHHHHhc
Confidence 4 333222211 11112 26899999999999999888764
No 80
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=79.62 E-value=12 Score=25.61 Aligned_cols=105 Identities=16% Similarity=0.207 Sum_probs=57.7
Q ss_pred eEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHh-----cCCCeEEec
Q 017114 203 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGVR 273 (377)
Q Consensus 203 ~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a-----~G~PvI~~~ 273 (377)
++.++.+.+ ....+.......+......-+.++..+.+.. .|++++-.. .+.-|..+++.+. ..+|+|...
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s 83 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLT 83 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEe
Confidence 345555433 2233333333333322222233444444443 577776433 2334667777763 357877543
Q ss_pred -CCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 274 -AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 274 -~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.+.. .+.+ +.|-.+++..|.+++++.+++..++.
T Consensus 84 ~~~~~~~~~~~~---~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 84 AKGGEEDESLAL---SLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp SCCSHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHH---hcChhhhccCCCCHHHHHHHHHHHhc
Confidence 3322 2233 45778899999999999999988764
No 81
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=79.09 E-value=14 Score=25.95 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=59.7
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHhc-----CCCeEEe
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGV 272 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~~ 272 (377)
.+++|+.+.+ ....+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+.. .+|+|..
T Consensus 7 ~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (140)
T 3grc_A 7 PRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVV 86 (140)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEE
Confidence 4555555443 2233344333333222222222444444433 477776443 33446667777654 6787754
Q ss_pred cCCC----CC-ccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 273 RAGG----IP-DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 273 ~~~~----~~-~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
.... .. +.+ ..+..+++..|.+.+++.++|..++..
T Consensus 87 s~~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 87 SANAREGELEFNSQ---PLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp CTTHHHHHHHHCCT---TTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred ecCCChHHHHHHhh---hcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 3321 11 334 557788999999999999999988753
No 82
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=78.87 E-value=6.4 Score=27.90 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=62.1
Q ss_pred ceEEEEecCc-cHHHHHHhhcC-CCEEEccccCchhHHHHHhc---CCEEEeccCC--cccchHHHHHHhc-----CCCe
Q 017114 202 ARIAFIGDGP-YREELEKMFTG-MPAVFTGMLLGEELSQAYAS---GDVFVMPSES--ETLGLVVLEAMSS-----GIPV 269 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~-~~v~~~g~~~~~~~~~~~~~---adi~v~ps~~--e~~~~~~~Ea~a~-----G~Pv 269 (377)
.+++|+.+.+ ....+...... .+..+...-+.++....+.. .|++++-... +.-|..+++.+.. .+||
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~i 84 (140)
T 3lua_A 5 GTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPV 84 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCE
Confidence 4556665443 23344444443 33333333333555555544 5777765442 2345566666544 6888
Q ss_pred EEecC-CCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCH
Q 017114 270 VGVRA-GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 312 (377)
Q Consensus 270 I~~~~-~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 312 (377)
|.... ... .+.+ ..+..+++..|.+.+++.++|..++...
T Consensus 85 i~ls~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 85 IIATKSDNPGYRHAAL---KFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp EEEESCCCHHHHHHHH---HSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred EEEeCCCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 75432 221 2233 4567889999999999999999988754
No 83
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=78.79 E-value=14 Score=25.67 Aligned_cols=106 Identities=20% Similarity=0.151 Sum_probs=58.9
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHhc-----CCCeEEe
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGV 272 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~~ 272 (377)
.+++|+.+.+ ..+.+..... .+..+...-+.++....+.. .|++++-.. .+.-|..+++.+.. ++|||..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~ 83 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFV 83 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEE
Confidence 3556665443 2233444443 33222222233455444433 577776443 33445666666654 6787754
Q ss_pred cC-CC--CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 273 RA-GG--IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 273 ~~-~~--~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
.. .. ..+.+ ..+..+++..|.+++++.++|..++..
T Consensus 84 s~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 84 SGYAPRTEGPAD---QPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp ESCCC-----TT---SCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred eCCCcHhHHHHh---hcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 32 21 12333 556778999999999999999998764
No 84
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=78.73 E-value=15 Score=25.87 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=60.6
Q ss_pred CceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCC-cccchHHHHHHhc--CCCeEEec-
Q 017114 201 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMSS--GIPVVGVR- 273 (377)
Q Consensus 201 ~~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a~--G~PvI~~~- 273 (377)
..+++|+.+.+ ..+.+.......+..+...-+.++....+.. .|++++-... +.-|..+++.+.. .+|+|...
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~ 83 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTY 83 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEES
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEc
Confidence 34666676554 2344455444433333222223455454443 5777764332 2335566666643 57776543
Q ss_pred CCC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 274 AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 274 ~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
... ..+.+ +.+..+++..|.+.+++.+++..++.
T Consensus 84 ~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 84 INEDQSILNAL---NSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp CCCHHHHHHHH---HTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 322 22333 55778899999999999999987764
No 85
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=78.66 E-value=22 Score=28.00 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=57.5
Q ss_pred CceEEEEecCccHHHHHHhhcCCCEEEcc-ccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCc
Q 017114 201 EARIAFIGDGPYREELEKMFTGMPAVFTG-MLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD 279 (377)
Q Consensus 201 ~~~l~i~G~g~~~~~l~~~~~~~~v~~~g-~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~ 279 (377)
+..++++... ..+.++++....++.+.. .... ..+..+|+++..+........+.++...|+||-..|.+...+
T Consensus 54 GA~VtVvap~-~~~~l~~l~~~~~i~~i~~~~~~----~dL~~adLVIaAT~d~~~N~~I~~~ak~gi~VNvvD~p~~~~ 128 (223)
T 3dfz_A 54 GAAITVVAPT-VSAEINEWEAKGQLRVKRKKVGE----EDLLNVFFIVVATNDQAVNKFVKQHIKNDQLVNMASSFSDGN 128 (223)
T ss_dssp CCCEEEECSS-CCHHHHHHHHTTSCEEECSCCCG----GGSSSCSEEEECCCCTHHHHHHHHHSCTTCEEEC-----CCS
T ss_pred CCEEEEECCC-CCHHHHHHHHcCCcEEEECCCCH----hHhCCCCEEEECCCCHHHHHHHHHHHhCCCEEEEeCCcccCe
Confidence 6777777643 335567776666666543 2222 345689998877666666666777666899998888776655
Q ss_pred ccccc--CCCCeeEEeCC-CCHHHHHHHHHHHhh
Q 017114 280 IIPED--QDGKIGYLFNP-GDLDDCLSKLEPLLY 310 (377)
Q Consensus 280 ~~~~~--~~~~~g~~~~~-~~~~~l~~~i~~~~~ 310 (377)
++... ..+..-+-+.. +....++..|++-++
T Consensus 129 f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~ie 162 (223)
T 3dfz_A 129 IQIPAQFSRGRLSLAISTDGASPLLTKRIKEDLS 162 (223)
T ss_dssp EECCEEEEETTEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 54110 22332233322 334456665555544
No 86
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=78.02 E-value=13 Score=26.05 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=38.3
Q ss_pred CCEEEeccCCcccchHHHHHHh--c-CCCeEEe-cCCC---CCccccccCCCCeeEEeCCC-CHHHHHHHHHHHhhC
Q 017114 243 GDVFVMPSESETLGLVVLEAMS--S-GIPVVGV-RAGG---IPDIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLYN 311 (377)
Q Consensus 243 adi~v~ps~~e~~~~~~~Ea~a--~-G~PvI~~-~~~~---~~~~~~~~~~~~~g~~~~~~-~~~~l~~~i~~~~~~ 311 (377)
.|++++| +.-|..+++.+. . .+|||.. .... ..+.+ ..+..+++..|. +.+++.++|..++..
T Consensus 63 ~dlvi~~---~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~---~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 63 YDLVMVS---DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAF---EQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp CSEEEEC---STTHHHHHHHHHHHSTTSEEEEEESSCCHHHHHHHH---HTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred CCEEEEc---CccHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHH---HcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 4666622 222444555543 3 6777654 3322 22233 456678999999 999999999888753
No 87
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=77.77 E-value=5.5 Score=33.31 Aligned_cols=91 Identities=10% Similarity=-0.006 Sum_probs=57.0
Q ss_pred CCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCc
Q 017114 174 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 253 (377)
Q Consensus 174 ~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e 253 (377)
...+..+|--. -|...+++++...++++++-+.+. ..+..++.....++.. ..++.+++...|+++..+...
T Consensus 6 ~~~igiIG~G~--~g~~~~~~~l~~~~~~~l~av~d~-~~~~~~~~a~~~~~~~-----~~~~~~ll~~~D~V~i~tp~~ 77 (308)
T 3uuw_A 6 NIKMGMIGLGS--IAQKAYLPILTKSERFEFVGAFTP-NKVKREKICSDYRIMP-----FDSIESLAKKCDCIFLHSSTE 77 (308)
T ss_dssp CCEEEEECCSH--HHHHHTHHHHTSCSSSEEEEEECS-CHHHHHHHHHHHTCCB-----CSCHHHHHTTCSEEEECCCGG
T ss_pred cCcEEEEecCH--HHHHHHHHHHHhCCCeEEEEEECC-CHHHHHHHHHHcCCCC-----cCCHHHHHhcCCEEEEeCCcH
Confidence 35677777421 122346777777788888754432 3344444443333321 245666666999999877655
Q ss_pred ccchHHHHHHhcCCCeEEe
Q 017114 254 TLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 254 ~~~~~~~Ea~a~G~PvI~~ 272 (377)
...-.+.+++..|++|++-
T Consensus 78 ~h~~~~~~al~~gk~vl~E 96 (308)
T 3uuw_A 78 THYEIIKILLNLGVHVYVD 96 (308)
T ss_dssp GHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHHHHCCCcEEEc
Confidence 5566778899999999864
No 88
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=76.64 E-value=17 Score=25.61 Aligned_cols=109 Identities=7% Similarity=0.007 Sum_probs=62.5
Q ss_pred ceEEEEecCcc-HHHHHHhhcCCCE--EEccccCchhHHHHHhc-------CCEEEeccC-CcccchHHHHHHhc-----
Q 017114 202 ARIAFIGDGPY-REELEKMFTGMPA--VFTGMLLGEELSQAYAS-------GDVFVMPSE-SETLGLVVLEAMSS----- 265 (377)
Q Consensus 202 ~~l~i~G~g~~-~~~l~~~~~~~~v--~~~g~~~~~~~~~~~~~-------adi~v~ps~-~e~~~~~~~Ea~a~----- 265 (377)
.+++|+.+.+. ...+.......+. .....-+.++....+.. .|++++-.. .+.-|..+++.+..
T Consensus 10 ~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 89 (146)
T 3ilh_A 10 DSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPM 89 (146)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGG
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhc
Confidence 45666665442 3344444444432 33333333566666654 688877544 33446666666544
Q ss_pred --CCCeEEecC-CCC---CccccccCCC-CeeEEeCCCCHHHHHHHHHHHhhCHH
Q 017114 266 --GIPVVGVRA-GGI---PDIIPEDQDG-KIGYLFNPGDLDDCLSKLEPLLYNQE 313 (377)
Q Consensus 266 --G~PvI~~~~-~~~---~~~~~~~~~~-~~g~~~~~~~~~~l~~~i~~~~~~~~ 313 (377)
..|+|.... ... .+.. ..+ -.+++..|.+.++|.++|........
T Consensus 90 ~~~~~ii~~t~~~~~~~~~~~~---~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 90 KNKSIVCLLSSSLDPRDQAKAE---ASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146)
T ss_dssp TTTCEEEEECSSCCHHHHHHHH---HCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred cCCCeEEEEeCCCChHHHHHHH---hcCCcceeeeCCCCHHHHHHHHHHHHHhcc
Confidence 567665432 222 2223 345 67799999999999999999877543
No 89
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=76.55 E-value=10 Score=26.68 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=58.4
Q ss_pred CceEEEEecCc-cHHHHHHhhcCCCEEEcccc-CchhHHHHHhc--CCEEEeccC-CcccchHHHHHH-hcCCCeEE-ec
Q 017114 201 EARIAFIGDGP-YREELEKMFTGMPAVFTGML-LGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAM-SSGIPVVG-VR 273 (377)
Q Consensus 201 ~~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~-~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~-a~G~PvI~-~~ 273 (377)
..++.|+-+.+ ....+.......+....+.. +.++..+.+.. -|++++--. .+.-|..+++.+ ..++|||. |.
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lTa 87 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATG 87 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBCT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEec
Confidence 34566666543 23444444443333323322 22455555544 477776432 233355566555 35789874 33
Q ss_pred CCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 274 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 274 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
.+...... +-+..+++..|.+++++.+++.+++
T Consensus 88 ~~~~~~~~---~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 88 YGSKGLDT---RYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp TCTTSCCS---SSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred CccHHHHH---hCCCCcEEECCCCHHHHHHHHHHHH
Confidence 33322222 3466789999999999999987764
No 90
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=76.08 E-value=5.9 Score=29.48 Aligned_cols=67 Identities=24% Similarity=0.324 Sum_probs=40.8
Q ss_pred HHHhcCCEEEeccC-CcccchHHHH---HHhcCCCeEEecC-----CCC--------CccccccCC-------------C
Q 017114 238 QAYASGDVFVMPSE-SETLGLVVLE---AMSSGIPVVGVRA-----GGI--------PDIIPEDQD-------------G 287 (377)
Q Consensus 238 ~~~~~adi~v~ps~-~e~~~~~~~E---a~a~G~PvI~~~~-----~~~--------~~~~~~~~~-------------~ 287 (377)
..+..||++|.-.. .+.-+.+.+| |.+.|+||++... ++. .+.. ++ .
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~---e~~f~~~N~~~~G~i~ 141 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIA---ENQFHYLNLYTVGLIK 141 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTT---CCCSCCCCHHHHHHHH
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHh---hhhhhhhhHHHhhhHH
Confidence 56899999887532 2223455555 6899999997532 111 1222 11 1
Q ss_pred CeeEEeCCCCHHHHHHHHHHHh
Q 017114 288 KIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 288 ~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
.+|.++. +.+++.++|...+
T Consensus 142 ~~g~~~~--~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 142 LNGRVVS--SEEDLLEEIKQRL 161 (162)
T ss_dssp TTEEEES--SHHHHHHHHHHTC
T ss_pred hCCeEEe--CHHHHHHHHHHHh
Confidence 1677775 8888888887654
No 91
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=75.27 E-value=18 Score=25.18 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=62.1
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCCE--EEccccCchhHHHHHhc---------CCEEEeccCC-cccchHHHHHHh----
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMPA--VFTGMLLGEELSQAYAS---------GDVFVMPSES-ETLGLVVLEAMS---- 264 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~v--~~~g~~~~~~~~~~~~~---------adi~v~ps~~-e~~~~~~~Ea~a---- 264 (377)
.+++++.+.+ ..+.+.......+. .....-+.++....+.. .|++++-... +.-|..+++.+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~ 82 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPT 82 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcc
Confidence 4566666543 33445555554432 33333333566666653 6887775432 334556666664
Q ss_pred -cCCCeEEec-CCC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 265 -SGIPVVGVR-AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 265 -~G~PvI~~~-~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.++|+|... ... ..+.+ ..+-.+++..|.+.+++.+++..++.
T Consensus 83 ~~~~pii~ls~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 83 LKRIPVVVLSTSINEDDIFHSY---DLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp GGGSCEEEEESCCCHHHHHHHH---HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cccccEEEEecCCcHHHHHHHH---HhchhheecCCCCHHHHHHHHHHHHH
Confidence 457877543 322 12233 45677899999999999999988764
No 92
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=74.88 E-value=6.8 Score=34.68 Aligned_cols=98 Identities=11% Similarity=-0.000 Sum_probs=57.6
Q ss_pred CCCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEec
Q 017114 172 PDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMP 249 (377)
Q Consensus 172 ~~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~p 249 (377)
.++..+.++|-- .-|...+++++...++++++-+.+. ..+..++..+..++.-.+.....++.+++. ..|+++..
T Consensus 81 ~~~irigiIG~G--~~g~~~~~~~l~~~~~~~lvav~d~-~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~ia 157 (433)
T 1h6d_A 81 DRRFGYAIVGLG--KYALNQILPGFAGCQHSRIEALVSG-NAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYII 157 (433)
T ss_dssp CCCEEEEEECCS--HHHHHTHHHHTTTCSSEEEEEEECS-CHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEEC
T ss_pred CCceEEEEECCc--HHHHHHHHHHHhhCCCcEEEEEEcC-CHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEc
Confidence 345678888752 1122246667766777777655443 333344444333321000001245556666 68999887
Q ss_pred cCCcccchHHHHHHhcCCCeEEe
Q 017114 250 SESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 250 s~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
+......-.+.+|+..|++|++-
T Consensus 158 tp~~~h~~~~~~al~aGk~Vl~E 180 (433)
T 1h6d_A 158 LPNSLHAEFAIRAFKAGKHVMCE 180 (433)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEEC
T ss_pred CCchhHHHHHHHHHHCCCcEEEc
Confidence 76666666788999999999975
No 93
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=73.74 E-value=17 Score=24.99 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=61.1
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHh-----cCCCeEEe
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGV 272 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a-----~G~PvI~~ 272 (377)
.+++|+.+.+ ..+.+.......+......-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|+|..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 83 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAV 83 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEE
Confidence 4566666543 3344555554444443333344565555543 577776443 3344666666664 34677654
Q ss_pred c-CCCC--CccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 273 R-AGGI--PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 273 ~-~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
. .... ...+ ..+..+++..|.+.+++.+++......
T Consensus 84 s~~~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 84 SGFAKNDLGKEA---CELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp ECC-CTTCCHHH---HHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred ECCcchhHHHHH---HHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 2 2221 2333 445677999999999999999887654
No 94
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=72.94 E-value=6.9 Score=27.53 Aligned_cols=108 Identities=16% Similarity=0.124 Sum_probs=56.4
Q ss_pred CceEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhc-CCEEEeccCC-cccchHHHHHHh----c---CCC-e
Q 017114 201 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS-GDVFVMPSES-ETLGLVVLEAMS----S---GIP-V 269 (377)
Q Consensus 201 ~~~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~-adi~v~ps~~-e~~~~~~~Ea~a----~---G~P-v 269 (377)
..++.++.+.+. .+.+.......+......-+.++....+.. .|++++-... +.-|..+++.+. . ..| +
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 86 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLL 86 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceE
Confidence 355666665432 233333333223222222222444444332 2777764332 223455565553 1 344 4
Q ss_pred E-EecCCCCC---ccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 270 V-GVRAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 270 I-~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
| .+...... +.. +.|-.+++..|.+.+++.+++..++..
T Consensus 87 i~~s~~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 87 VALSGNTDKSTKEKCM---SFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp EEEESCCSHHHHHHHH---HTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred EEEeCCCCHHHHHHHH---HcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 4 44443322 233 457778999999999999999887653
No 95
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=72.49 E-value=23 Score=25.19 Aligned_cols=110 Identities=17% Similarity=0.198 Sum_probs=59.6
Q ss_pred CceEEEEecCcc-HHHHHHhhcCCCEE-EccccCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHh-----cCCCeE
Q 017114 201 EARIAFIGDGPY-REELEKMFTGMPAV-FTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVV 270 (377)
Q Consensus 201 ~~~l~i~G~g~~-~~~l~~~~~~~~v~-~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a-----~G~PvI 270 (377)
+.++.|+-+.+. .+.++......+.. ....-+..+..+.+.. .|++++--. .+--|..+++.+- ..+|||
T Consensus 12 ~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI 91 (134)
T 3to5_A 12 NMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVL 91 (134)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEE
Confidence 456666665432 23333333333221 1111122344444433 577776433 2334667777764 468887
Q ss_pred Ee-cCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 271 GV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 271 ~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.- ..+.........+.|-.+++..|.+++++.+++.++++
T Consensus 92 ~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 92 MITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp EEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 54 33332222111156778999999999999999988764
No 96
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=72.04 E-value=23 Score=24.84 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=58.3
Q ss_pred eEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHh-----cCCCeEEe-
Q 017114 203 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGV- 272 (377)
Q Consensus 203 ~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a-----~G~PvI~~- 272 (377)
+++++.+.+. .+.+.......+......-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|||..
T Consensus 5 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls 84 (138)
T 3c3m_A 5 TILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLT 84 (138)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEE
Confidence 4556665432 233444443333332222233455555443 577776443 2334666777764 25787753
Q ss_pred cCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 273 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 273 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
..............+..+++..|.+.+++.+++..++..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 85 AKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp SSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred CCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 333222111000123358999999999999999988764
No 97
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=72.04 E-value=12 Score=27.87 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=25.1
Q ss_pred HHHhcCCEEEeccCCcccchHHHH---HHhcCCCeEEec
Q 017114 238 QAYASGDVFVMPSESETLGLVVLE---AMSSGIPVVGVR 273 (377)
Q Consensus 238 ~~~~~adi~v~ps~~e~~~~~~~E---a~a~G~PvI~~~ 273 (377)
..+..||++|.--. +.-..+.+| |.+.|+||++..
T Consensus 73 ~~i~~aD~vva~~~-~~d~Gt~~EiGyA~algKPVi~l~ 110 (165)
T 2khz_A 73 NWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLF 110 (165)
T ss_dssp HHHHHCSEEEEECS-SCCHHHHHHHHHHHHTCSSEEEEE
T ss_pred HHHHhCCEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEE
Confidence 67999999887432 333455555 679999999863
No 98
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=71.96 E-value=23 Score=24.84 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=58.6
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccC-CcccchHHHHHHh-----cCCCeEEe
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGV 272 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a-----~G~PvI~~ 272 (377)
.+++|+.+.+ ..+.+....... ......-+.++....+. ..|++++-.. .+.-|..+++.+. .++|+|..
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 82 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEE
Confidence 3566666543 334445544443 22222223345544443 3577776543 2333555666654 46787753
Q ss_pred -cCC---CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCH
Q 017114 273 -RAG---GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 312 (377)
Q Consensus 273 -~~~---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 312 (377)
... ...+.+ ..|-.+++..|.+.+++.++|..++...
T Consensus 83 s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 123 (140)
T 3n53_A 83 FSSEHKEAIVNGL---HSGADDYLTKPFNRNDLLSRIEIHLRTQ 123 (140)
T ss_dssp ECC----CTTTTT---TCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHH---hcCCCeeeeCCCCHHHHHHHHHHHHhhH
Confidence 222 233344 5577789999999999999999887643
No 99
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=71.70 E-value=25 Score=25.14 Aligned_cols=65 Identities=15% Similarity=0.270 Sum_probs=42.3
Q ss_pred cCCEEEeccC-CcccchHHHHHHhc-----CCCeEEec-CCC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 242 SGDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGVR-AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 242 ~adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~~~-~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
..|++++-.. .+.-|..+++.+.. ++|+|... ... ..+.+ ..+..+++..|.+.+++.++|.++.
T Consensus 59 ~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~ 133 (152)
T 3heb_A 59 RAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCY---DLGANVYITKPVNYENFANAIRQLG 133 (152)
T ss_dssp CBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHH---HTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHH---HCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 3577776443 33446667777654 57777543 322 12233 5577889999999999999998773
No 100
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=71.53 E-value=21 Score=24.25 Aligned_cols=105 Identities=19% Similarity=0.201 Sum_probs=56.0
Q ss_pred eEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccC-CcccchHHHHHHhc-----CCCeEEec
Q 017114 203 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGVR 273 (377)
Q Consensus 203 ~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~~~ 273 (377)
++.++.+.+. .+.+.......+......-+..+....+. ..|++++-.. .+.-|..+++.+.. .+|+|...
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s 82 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVT 82 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEE
Confidence 3455554432 23344443333333222222344444443 3688776443 23345666666642 57877542
Q ss_pred -CCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 274 -AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 274 -~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.... .+.. +.|..+++..|.+.+++.+++..++.
T Consensus 83 ~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 83 AFAMKGDEERIR---EGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp ------CHHHHH---HHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHH---hCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 2221 2223 34667899999999999999988764
No 101
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=71.22 E-value=17 Score=30.57 Aligned_cols=88 Identities=11% Similarity=0.107 Sum_probs=56.4
Q ss_pred eEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccCCc
Q 017114 176 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSESE 253 (377)
Q Consensus 176 ~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~~e 253 (377)
.+..+|.-. -| ...++++...++++++-+.+ ...+..++.....++. ..++.+++. ..|+++..+...
T Consensus 5 ~vgiiG~G~--~g-~~~~~~l~~~~~~~l~av~d-~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~D~V~i~tp~~ 74 (331)
T 4hkt_A 5 RFGLLGAGR--IG-KVHAKAVSGNADARLVAVAD-AFPAAAEAIAGAYGCE------VRTIDAIEAAADIDAVVICTPTD 74 (331)
T ss_dssp EEEEECCSH--HH-HHHHHHHHHCTTEEEEEEEC-SSHHHHHHHHHHTTCE------ECCHHHHHHCTTCCEEEECSCGG
T ss_pred EEEEECCCH--HH-HHHHHHHhhCCCcEEEEEEC-CCHHHHHHHHHHhCCC------cCCHHHHhcCCCCCEEEEeCCch
Confidence 466666411 11 24667777778888775443 2344455555444554 256667777 789998877655
Q ss_pred ccchHHHHHHhcCCCeEEec
Q 017114 254 TLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 254 ~~~~~~~Ea~a~G~PvI~~~ 273 (377)
.....+.+++..|++|++-.
T Consensus 75 ~h~~~~~~al~~gk~v~~EK 94 (331)
T 4hkt_A 75 THADLIERFARAGKAIFCEK 94 (331)
T ss_dssp GHHHHHHHHHHTTCEEEECS
T ss_pred hHHHHHHHHHHcCCcEEEec
Confidence 55667888999999999753
No 102
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=71.02 E-value=18 Score=25.00 Aligned_cols=107 Identities=16% Similarity=0.193 Sum_probs=57.3
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccC-CcccchHHHHHHhc-----CCCeEEe
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGV 272 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~~ 272 (377)
.+++|+.+.+ ....+.....+.+......-+.++....+. ..|++++-.. .+.-|..+++.+.. ..|+|.+
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVV 86 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEE
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEE
Confidence 4555565443 223344443333322222222344444443 3577766443 33446677777653 2344444
Q ss_pred cCCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 273 RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 273 ~~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
..... .+.+ ..+..+++..|.+.+++.++|......
T Consensus 87 ~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 87 SGLDKAKLQQAV---TEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp CCSCSHHHHHHH---HHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred eCCChHHHHHHH---HhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 33222 1233 456778999999999999999888654
No 103
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=70.38 E-value=27 Score=25.01 Aligned_cols=108 Identities=16% Similarity=0.185 Sum_probs=58.9
Q ss_pred CceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCC-cccchHHHHHHh---cCCCeEEe-
Q 017114 201 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV- 272 (377)
Q Consensus 201 ~~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~~- 272 (377)
..+++|+.+.+ ....+.......+..+...-+.++....+.. .|++++-... +.-|..+++.+. ..+|||..
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls 86 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVIS 86 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEe
Confidence 45566666443 2334444444444333322233455555543 5777764432 233555555553 36777643
Q ss_pred cCCC---CCccccccCCC-CeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 273 RAGG---IPDIIPEDQDG-KIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 273 ~~~~---~~~~~~~~~~~-~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
.... ..+.+ ..+ -.+++..|.+.+++.++|..++..
T Consensus 87 ~~~~~~~~~~~~---~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 87 GYADAQATIDAV---NRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp CGGGHHHHHHHH---HTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH---hccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 2222 12222 334 578999999999999999888754
No 104
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=69.96 E-value=25 Score=24.51 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=61.4
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCC------cccchHHHHHHh---cCCCe
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES------ETLGLVVLEAMS---SGIPV 269 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~------e~~~~~~~Ea~a---~G~Pv 269 (377)
.+++++.+.+ ..+.+.......+..+...-+.++....+.. .|++++-... +.-|..+++.+. .++|+
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~i 83 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPV 83 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCE
Confidence 4566666543 3345555555444333333333555555554 4666654332 333555555553 46787
Q ss_pred EEe-cCCC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 270 VGV-RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 270 I~~-~~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
|.. .... ..+.+ ..+..+++..|.+.+++.++|..++..
T Consensus 84 i~ls~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~l~~~~~~ 126 (140)
T 2qr3_A 84 VLFTAYADIDLAVRGI---KEGASDFVVKPWDNQKLLETLLNAASQ 126 (140)
T ss_dssp EEEEEGGGHHHHHHHH---HTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred EEEECCCCHHHHHHHH---HcCchheeeCCCCHHHHHHHHHHHHHh
Confidence 754 2222 22333 456678999999999999999988764
No 105
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=69.90 E-value=5 Score=30.40 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=39.8
Q ss_pred HHhcCCEEEeccCCcccch--HHHHHHhcCCCeEEecCCCC-CccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 239 AYASGDVFVMPSESETLGL--VVLEAMSSGIPVVGVRAGGI-PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 239 ~~~~adi~v~ps~~e~~~~--~~~Ea~a~G~PvI~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
+...||.+|...- ++|+ .+.|++..++||++-+.-+. ..++.. .+.+. +...+|++++.+.+.+.+..
T Consensus 104 m~~~sda~IvlpG--g~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~-~~~~~--i~~~~~~~e~~~~l~~~~~~ 174 (176)
T 2iz6_A 104 NALSSNVLVAVGM--GPGTAAEVALALKAKKPVVLLGTQPEAEKFFTS-LDAGL--VHVAADVAGAIAAVKQLLAK 174 (176)
T ss_dssp CGGGCSEEEEESC--CHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHH-HCTTT--EEEESSHHHHHHHHHHHHHC
T ss_pred HHHhCCEEEEecC--CccHHHHHHHHHHhCCcEEEEcCcccccccCCh-hhcCe--EEEcCCHHHHHHHHHHHHHh
Confidence 4556787665332 3443 58889999999998875221 112210 11122 22344899999988877643
No 106
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=69.32 E-value=22 Score=30.92 Aligned_cols=96 Identities=8% Similarity=-0.119 Sum_probs=56.0
Q ss_pred CCCeEEEeeccccc-ccHHHHHHHHHhCCCceEEE-EecCccHHHHHHhhcCCCEEEccccCchhHHHHHhc-------C
Q 017114 173 DKPLIVHVGRLGVE-KSLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS-------G 243 (377)
Q Consensus 173 ~~~~i~~~G~~~~~-k~~~~l~~a~~~l~~~~l~i-~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~-------a 243 (377)
.+..+..+|.-... -| ...+.++...++++++- +. ....+..++.+++.++.-. ....++.++++. .
T Consensus 11 ~~~rvgiiG~G~~~~ig-~~h~~~~~~~~~~~lva~v~-d~~~~~a~~~a~~~g~~~~--~~~~~~~~ll~~~~~~~~~v 86 (398)
T 3dty_A 11 QPIRWAMVGGGSQSQIG-YIHRCAALRDNTFVLVAGAF-DIDPIRGSAFGEQLGVDSE--RCYADYLSMFEQEARRADGI 86 (398)
T ss_dssp SCEEEEEEECCTTCSSH-HHHHHHHHGGGSEEEEEEEC-CSSHHHHHHHHHHTTCCGG--GBCSSHHHHHHHHTTCTTCC
T ss_pred CcceEEEEcCCccchhH-HHHHHHHhhCCCeEEEEEEe-CCCHHHHHHHHHHhCCCcc--eeeCCHHHHHhcccccCCCC
Confidence 34567777742200 11 23445566666777653 32 2344555555544433100 112466667765 8
Q ss_pred CEEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 244 DVFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 244 di~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
|+++..+......-.+.+|+..|++|++-
T Consensus 87 D~V~i~tp~~~H~~~~~~al~aGkhVl~E 115 (398)
T 3dty_A 87 QAVSIATPNGTHYSITKAALEAGLHVVCE 115 (398)
T ss_dssp SEEEEESCGGGHHHHHHHHHHTTCEEEEC
T ss_pred CEEEECCCcHHHHHHHHHHHHCCCeEEEe
Confidence 99888776555566788999999999974
No 107
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=69.25 E-value=45 Score=28.11 Aligned_cols=91 Identities=10% Similarity=0.011 Sum_probs=55.6
Q ss_pred CCCeEEEeecccccccHHHHHHHHH-hCCCceEEEEecCccHHHHHHhhcCCCE-EEccccCchhHHHHHh--cCCEEEe
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMD-RLPEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYA--SGDVFVM 248 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~-~l~~~~l~i~G~g~~~~~l~~~~~~~~v-~~~g~~~~~~~~~~~~--~adi~v~ 248 (377)
+...++.+|--. -| ...++++. ..++++++.+.+. ..+..++..+..++ .. ..++.+++. .+|+++.
T Consensus 7 ~~~~v~iiG~G~--ig-~~~~~~l~~~~~~~~~vav~d~-~~~~~~~~a~~~g~~~~-----~~~~~~~l~~~~~D~V~i 77 (346)
T 3cea_A 7 KPLRAAIIGLGR--LG-ERHARHLVNKIQGVKLVAACAL-DSNQLEWAKNELGVETT-----YTNYKDMIDTENIDAIFI 77 (346)
T ss_dssp CCEEEEEECCST--TH-HHHHHHHHHTCSSEEEEEEECS-CHHHHHHHHHTTCCSEE-----ESCHHHHHTTSCCSEEEE
T ss_pred CcceEEEEcCCH--HH-HHHHHHHHhcCCCcEEEEEecC-CHHHHHHHHHHhCCCcc-----cCCHHHHhcCCCCCEEEE
Confidence 445677777421 12 24566666 6678777655432 34444454444333 21 145666676 6899988
Q ss_pred ccCCcccchHHHHHHhcCCCeEEe
Q 017114 249 PSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 249 ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
.+........+.+++..|++|++-
T Consensus 78 ~tp~~~h~~~~~~al~~G~~v~~e 101 (346)
T 3cea_A 78 VAPTPFHPEMTIYAMNAGLNVFCE 101 (346)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred eCChHhHHHHHHHHHHCCCEEEEc
Confidence 776555556677899999999974
No 108
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=69.18 E-value=14 Score=25.24 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=46.4
Q ss_pred hhHHHHHh--cCCEEEeccCC--cccchHHHHHHh-----cCCCeEEecCCCC----CccccccCCCCeeEEeCCCCHHH
Q 017114 234 EELSQAYA--SGDVFVMPSES--ETLGLVVLEAMS-----SGIPVVGVRAGGI----PDIIPEDQDGKIGYLFNPGDLDD 300 (377)
Q Consensus 234 ~~~~~~~~--~adi~v~ps~~--e~~~~~~~Ea~a-----~G~PvI~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~ 300 (377)
++....+. ..|++++-... +.-|..+++.+. ..+|+|.. .... .+.. ..+..+++..|.+.++
T Consensus 39 ~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~-~~~~~~~~~~~~---~~g~~~~l~kp~~~~~ 114 (127)
T 2gkg_A 39 KGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII-GNPDGFAQHRKL---KAHADEYVAKPVDADQ 114 (127)
T ss_dssp HHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE-ECGGGHHHHHHS---TTCCSEEEESSCCHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE-ecCCchhHHHHH---HhCcchheeCCCCHHH
Confidence 44444443 35777764332 334556666664 46888876 3222 2233 5566789999999999
Q ss_pred HHHHHHHHhhC
Q 017114 301 CLSKLEPLLYN 311 (377)
Q Consensus 301 l~~~i~~~~~~ 311 (377)
+.+++..++..
T Consensus 115 l~~~i~~~~~~ 125 (127)
T 2gkg_A 115 LVERAGALIGF 125 (127)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHcC
Confidence 99999887653
No 109
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=69.05 E-value=35 Score=25.76 Aligned_cols=108 Identities=13% Similarity=0.038 Sum_probs=58.1
Q ss_pred CCceEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCccc-chHHHHHHh---cCCCeEEe-c
Q 017114 200 PEARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETL-GLVVLEAMS---SGIPVVGV-R 273 (377)
Q Consensus 200 ~~~~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~-~~~~~Ea~a---~G~PvI~~-~ 273 (377)
.+.+++|+.+.+. ...+.......+....+..+..+.. -...|++++-....+. |. +.+.+. ..+|||.. .
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al--~~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~lt~ 87 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF--DVPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVALVE 87 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC--SSCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEEEEC
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC--CCCCCEEEEeCCCCccchH-HHHHHhccCCCCCEEEEEc
Confidence 3456777765542 2333333332222222222222211 1256887765443232 33 555554 45787753 3
Q ss_pred CCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHH
Q 017114 274 AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQE 313 (377)
Q Consensus 274 ~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~ 313 (377)
.... .+.+ ..|-.+++..|.+.+++..++..++....
T Consensus 88 ~~~~~~~~~a~---~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 127 (196)
T 1qo0_D 88 YESPAVLSQII---ELECHGVITQPLDAHRVLPVLVSARRISE 127 (196)
T ss_dssp CCSHHHHHHHH---HHTCSEEEESSCCGGGHHHHHHHHHHHHH
T ss_pred CCChHHHHHHH---HcCCCeeEecCcCHHHHHHHHHHHHHHHH
Confidence 3322 2223 44667899999999999999998876443
No 110
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=69.00 E-value=16 Score=31.20 Aligned_cols=92 Identities=10% Similarity=0.052 Sum_probs=57.6
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEecc
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPS 250 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps 250 (377)
.+..++.+|.-. -|...+++++...++++++-+.+. ..+..++.+...++... .++.+++. ..|+++..+
T Consensus 26 ~~~rigiIG~G~--~g~~~~~~~l~~~~~~~l~av~d~-~~~~~~~~a~~~g~~~~-----~~~~~ll~~~~~D~V~i~t 97 (350)
T 3rc1_A 26 NPIRVGVIGCAD--IAWRRALPALEAEPLTEVTAIASR-RWDRAKRFTERFGGEPV-----EGYPALLERDDVDAVYVPL 97 (350)
T ss_dssp CCEEEEEESCCH--HHHHTHHHHHHHCTTEEEEEEEES-SHHHHHHHHHHHCSEEE-----ESHHHHHTCTTCSEEEECC
T ss_pred CceEEEEEcCcH--HHHHHHHHHHHhCCCeEEEEEEcC-CHHHHHHHHHHcCCCCc-----CCHHHHhcCCCCCEEEECC
Confidence 456788887521 122346777778888887744432 23444444443344321 45666676 479988877
Q ss_pred CCcccchHHHHHHhcCCCeEEe
Q 017114 251 ESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
......-.+.+|+..|++|++-
T Consensus 98 p~~~h~~~~~~al~aGk~Vl~E 119 (350)
T 3rc1_A 98 PAVLHAEWIDRALRAGKHVLAE 119 (350)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEE
T ss_pred CcHHHHHHHHHHHHCCCcEEEe
Confidence 6555566788999999999874
No 111
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=68.83 E-value=27 Score=24.36 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=45.4
Q ss_pred hhHHHHHh--cCCEEEeccCC--cccchHHHHHHh--cCCCeEEe-cCCCC---CccccccCCCCeeEEeCCCCHHHHHH
Q 017114 234 EELSQAYA--SGDVFVMPSES--ETLGLVVLEAMS--SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLS 303 (377)
Q Consensus 234 ~~~~~~~~--~adi~v~ps~~--e~~~~~~~Ea~a--~G~PvI~~-~~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~ 303 (377)
++....+. ..|++++-... +.-|..+++.+. .++|+|.. ..... .+.+ ..+..+++..|.+.+++.+
T Consensus 44 ~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~ 120 (140)
T 3cg0_A 44 EEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQDVETFQRAK---RVNPFGYLAKPVAADTLHR 120 (140)
T ss_dssp HHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCCCHHHHHHHH---TTCCSEEEEESCCHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHH---hcCCCEEEeCCCCHHHHHH
Confidence 44444443 35777765432 233445555544 57888754 33322 2333 5567789999999999999
Q ss_pred HHHHHhh
Q 017114 304 KLEPLLY 310 (377)
Q Consensus 304 ~i~~~~~ 310 (377)
+|..++.
T Consensus 121 ~i~~~~~ 127 (140)
T 3cg0_A 121 SIEMAIH 127 (140)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988865
No 112
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=68.65 E-value=19 Score=24.61 Aligned_cols=65 Identities=14% Similarity=0.249 Sum_probs=41.0
Q ss_pred CCEEEeccCC-cccchHHHHHHh-----cCCCeEEe-cCCC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 243 GDVFVMPSES-ETLGLVVLEAMS-----SGIPVVGV-RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 243 adi~v~ps~~-e~~~~~~~Ea~a-----~G~PvI~~-~~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.|++++-... +.-|..+++.+. .+.|+|.. .... ..+.+ +.|-.+++..|.+.+++.+++..++.
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 47 PDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGL---ETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp CSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHHHHHHTTC---CCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHH---hcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 4777664332 234566676664 35787643 3322 22333 55667899999999999999987754
No 113
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=68.59 E-value=28 Score=24.51 Aligned_cols=107 Identities=11% Similarity=0.158 Sum_probs=60.3
Q ss_pred CceEEEEecCc-cHHHHHHhhcCC--CEEEccccCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHhc-----CCCe
Q 017114 201 EARIAFIGDGP-YREELEKMFTGM--PAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPV 269 (377)
Q Consensus 201 ~~~l~i~G~g~-~~~~l~~~~~~~--~v~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~Pv 269 (377)
..+++|+.+.+ ....+....... .......-+.++....+.. .|++++-.. .+.-|..+++.+.. ++|+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPI 84 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCE
Confidence 34566666443 233444444332 2112222223555555544 477776443 23446677777654 5788
Q ss_pred EEecC-CCC---CccccccCCCCeeEEeCCC-CHHHHHHHHHHHhh
Q 017114 270 VGVRA-GGI---PDIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLY 310 (377)
Q Consensus 270 I~~~~-~~~---~~~~~~~~~~~~g~~~~~~-~~~~l~~~i~~~~~ 310 (377)
|.... ... .+.+ ..|..+++..|. +.+++.++|..++.
T Consensus 85 i~~s~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 85 VILTDNVSDDRAKQCM---AAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp EEEETTCCHHHHHHHH---HTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHH---HcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 75433 222 2233 557788999999 99999999988864
No 114
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=68.39 E-value=31 Score=29.13 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=58.0
Q ss_pred CeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccCC
Q 017114 175 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES 252 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~~ 252 (377)
..+..+|.-.- | ...++++...++++++-+.+ ...+..++.....++.. ..++.+++. ..|+++..+..
T Consensus 5 ~rvgiiG~G~~--g-~~~~~~l~~~~~~~l~av~d-~~~~~~~~~a~~~g~~~-----~~~~~~~l~~~~~D~V~i~tp~ 75 (344)
T 3euw_A 5 LRIALFGAGRI--G-HVHAANIAANPDLELVVIAD-PFIEGAQRLAEANGAEA-----VASPDEVFARDDIDGIVIGSPT 75 (344)
T ss_dssp EEEEEECCSHH--H-HHHHHHHHHCTTEEEEEEEC-SSHHHHHHHHHTTTCEE-----ESSHHHHTTCSCCCEEEECSCG
T ss_pred eEEEEECCcHH--H-HHHHHHHHhCCCcEEEEEEC-CCHHHHHHHHHHcCCce-----eCCHHHHhcCCCCCEEEEeCCc
Confidence 45677764211 2 24667777788887775443 33445555555544322 256677777 78999887765
Q ss_pred cccchHHHHHHhcCCCeEEec
Q 017114 253 ETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 253 e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
....-.+.+++..|++|++-.
T Consensus 76 ~~h~~~~~~al~~gk~v~~EK 96 (344)
T 3euw_A 76 STHVDLITRAVERGIPALCEK 96 (344)
T ss_dssp GGHHHHHHHHHHTTCCEEECS
T ss_pred hhhHHHHHHHHHcCCcEEEEC
Confidence 555667889999999999753
No 115
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=68.38 E-value=30 Score=24.81 Aligned_cols=107 Identities=17% Similarity=0.175 Sum_probs=61.7
Q ss_pred CceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHh-----cCCCeEE
Q 017114 201 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVG 271 (377)
Q Consensus 201 ~~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a-----~G~PvI~ 271 (377)
..+++|+.+.+ ..+.+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|+|.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~ 86 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVIL 86 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEE
Confidence 34566666443 2344444444444333333333555555543 577776543 2344666777664 3578775
Q ss_pred ecC-CCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 272 VRA-GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 272 ~~~-~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
... ... .+.+ ..+..+++..|.+.+++.+++..++.
T Consensus 87 ~s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 87 LTILSDPRDVVRSL---ECGADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp EECCCSHHHHHHHH---HHCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHH---HCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 432 222 2233 44667899999999999999988875
No 116
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=68.02 E-value=24 Score=30.16 Aligned_cols=96 Identities=13% Similarity=0.080 Sum_probs=56.3
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEecc
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPS 250 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps 250 (377)
++..+..+|.-.- | ..+++++...++++++-+.+. ..+..++.....++. .+.....++.+++. ..|+++..+
T Consensus 5 ~~~~vgiiG~G~i--g-~~~~~~l~~~~~~~lv~v~d~-~~~~~~~~a~~~~~~-~~~~~~~~~~~ll~~~~~D~V~i~t 79 (362)
T 1ydw_A 5 TQIRIGVMGCADI--A-RKVSRAIHLAPNATISGVASR-SLEKAKAFATANNYP-ESTKIHGSYESLLEDPEIDALYVPL 79 (362)
T ss_dssp -CEEEEEESCCTT--H-HHHHHHHHHCTTEEEEEEECS-SHHHHHHHHHHTTCC-TTCEEESSHHHHHHCTTCCEEEECC
T ss_pred CceEEEEECchHH--H-HHHHHHHhhCCCcEEEEEEcC-CHHHHHHHHHHhCCC-CCCeeeCCHHHHhcCCCCCEEEEcC
Confidence 3456777774211 1 346677777788887655543 333444444433320 00011245666776 489998877
Q ss_pred CCcccchHHHHHHhcCCCeEEec
Q 017114 251 ESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
......-.+.+++..|++|++-.
T Consensus 80 p~~~h~~~~~~al~aGk~V~~EK 102 (362)
T 1ydw_A 80 PTSLHVEWAIKAAEKGKHILLEK 102 (362)
T ss_dssp CGGGHHHHHHHHHTTTCEEEECS
T ss_pred ChHHHHHHHHHHHHCCCeEEEec
Confidence 65555666788999999999753
No 117
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=67.91 E-value=14 Score=24.67 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=57.1
Q ss_pred eEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCC-cccchHHHHHHh-----cCCCeEEe-
Q 017114 203 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS-----SGIPVVGV- 272 (377)
Q Consensus 203 ~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a-----~G~PvI~~- 272 (377)
++.++.+.+ ..+.+.......+......-+.++....+.. .|++++-... +.-+..+++.+. .++|+|..
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFL 82 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEe
Confidence 455555443 2334444443333333222233444444433 5777765432 334566677664 46777643
Q ss_pred cCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 273 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 273 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
......+.. ..+-.+++..|.+.+++.+++..++.
T Consensus 83 ~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 83 GEPPVDPLL---TAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp SSCCSSHHH---HHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CCCCchhhh---hcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 332222444 44666788889899999999987654
No 118
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=67.76 E-value=28 Score=24.28 Aligned_cols=107 Identities=18% Similarity=0.245 Sum_probs=59.7
Q ss_pred ceEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHh-----cCCCeEEe
Q 017114 202 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGV 272 (377)
Q Consensus 202 ~~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a-----~G~PvI~~ 272 (377)
.++.++.+.+. .+.+.......+......-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|+|..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~ 84 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILML 84 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEE
Confidence 45556654432 233444433333333223333454444433 577776443 2334566666663 25787754
Q ss_pred c-CCCCC---ccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 273 R-AGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 273 ~-~~~~~---~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
. ..... +.+ +.|-.+++..|.+.+++..++..++..
T Consensus 85 t~~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 85 TAQGDISAKIAGF---EAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp ECTTCHHHHHHHH---HHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred ecCCCHHHHHHHH---hcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 3 33222 223 456778999999999999999988764
No 119
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=67.15 E-value=17 Score=31.19 Aligned_cols=91 Identities=18% Similarity=0.101 Sum_probs=56.0
Q ss_pred CeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcC--CEEEeccCC
Q 017114 175 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASG--DVFVMPSES 252 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~a--di~v~ps~~ 252 (377)
..+..+|--. -|...+++++...++++++-+.+ ...+..++...... +.....++.++++.. |+++..+..
T Consensus 6 ~rigiIG~G~--~g~~~~~~~l~~~~~~~l~av~d-~~~~~~~~~a~~~~----~~~~~~~~~~ll~~~~vD~V~i~tp~ 78 (359)
T 3m2t_A 6 IKVGLVGIGA--QMQENLLPSLLQMQDIRIVAACD-SDLERARRVHRFIS----DIPVLDNVPAMLNQVPLDAVVMAGPP 78 (359)
T ss_dssp EEEEEECCSH--HHHHTHHHHHHTCTTEEEEEEEC-SSHHHHGGGGGTSC----SCCEESSHHHHHHHSCCSEEEECSCH
T ss_pred ceEEEECCCH--HHHHHHHHHHHhCCCcEEEEEEc-CCHHHHHHHHHhcC----CCcccCCHHHHhcCCCCCEEEEcCCc
Confidence 4567776421 12234677788888888774443 23445555554421 111125677777765 888877655
Q ss_pred cccchHHHHHHhcCCCeEEe
Q 017114 253 ETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 253 e~~~~~~~Ea~a~G~PvI~~ 272 (377)
....-.+.+|+..|++|++-
T Consensus 79 ~~H~~~~~~al~aGkhVl~E 98 (359)
T 3m2t_A 79 QLHFEMGLLAMSKGVNVFVE 98 (359)
T ss_dssp HHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHCCCeEEEE
Confidence 55556678999999999963
No 120
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=67.10 E-value=28 Score=24.05 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=56.5
Q ss_pred eEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCC-cccchHHHHHHh---cCCCeEEe-cC
Q 017114 203 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-RA 274 (377)
Q Consensus 203 ~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~~-~~ 274 (377)
++.++.+.+. .+.+.......+......-+.++....+.. .|++++-... +.-|..+++.+. .++|+|.. ..
T Consensus 5 ~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (132)
T 3crn_A 5 RILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGY 84 (132)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESC
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEecc
Confidence 4555654432 233344333333222222222444444433 5777764332 223555565553 35777643 33
Q ss_pred CCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 275 GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 275 ~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
... .+.+ +.|-.+++..|.+.+++.+++..++.
T Consensus 85 ~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 85 ASLENSVFSL---NAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp CCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHH---hccchhhccCCCCHHHHHHHHHHHHh
Confidence 322 2233 55778999999999999999988764
No 121
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=66.96 E-value=25 Score=24.44 Aligned_cols=107 Identities=20% Similarity=0.157 Sum_probs=59.1
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccC-CcccchHHHHHHhc---CCCeEEecC
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSS---GIPVVGVRA 274 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a~---G~PvI~~~~ 274 (377)
.+++|+.+.+ ..+.+..............-+.++....+. ..|++++-.. .+.-|..+++.+.. ..|+|....
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 87 (137)
T 3hdg_A 8 LKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISA 87 (137)
T ss_dssp CCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCC
T ss_pred cEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEec
Confidence 4666666543 233444444433211112222244444443 3577776543 33345566665543 567765432
Q ss_pred CCC----CccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 275 GGI----PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 275 ~~~----~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
... .+.+ ..+..+++..|.+.+++.++|.+++..
T Consensus 88 ~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 88 FSEMKYFIKAI---ELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp CCCHHHHHHHH---HHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred CcChHHHHHHH---hCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 221 2233 456678999999999999999988753
No 122
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=66.89 E-value=13 Score=31.61 Aligned_cols=83 Identities=6% Similarity=-0.074 Sum_probs=46.9
Q ss_pred HHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccc-------------cCchhHHHHHhcCCEEEeccCCcccc
Q 017114 190 DFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGM-------------LLGEELSQAYASGDVFVMPSESETLG 256 (377)
Q Consensus 190 ~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~-------------~~~~~~~~~~~~adi~v~ps~~e~~~ 256 (377)
..+++++...|+++++-+.+.. .+....+++..++...|. .-..+..+++..+|+++..+-....-
T Consensus 15 ~~~~r~l~~~~~~elvav~d~~-~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV~~aTp~~~h~ 93 (334)
T 2czc_A 15 KRVAYAVTKQDDMELIGITKTK-PDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGA 93 (334)
T ss_dssp HHHHHHHHTCTTEEEEEEEESS-CSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEEEECCSTTHHH
T ss_pred HHHHHHHhcCCCCEEEEEEcCC-HHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEEEECCCccccH
Confidence 3578888888888887666432 222223333222222221 11235556667899988766433222
Q ss_pred hHHHHHHhcCCCeEEec
Q 017114 257 LVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 257 ~~~~Ea~a~G~PvI~~~ 273 (377)
.....++..|++||++.
T Consensus 94 ~~a~~~l~aGk~Vi~sa 110 (334)
T 2czc_A 94 KNKPLYEKAGVKAIFQG 110 (334)
T ss_dssp HHHHHHHHHTCEEEECT
T ss_pred HHHHHHHHcCCceEeec
Confidence 23457888999999763
No 123
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=66.78 E-value=25 Score=29.57 Aligned_cols=92 Identities=14% Similarity=0.081 Sum_probs=56.6
Q ss_pred CCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccC
Q 017114 174 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE 251 (377)
Q Consensus 174 ~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~ 251 (377)
...+..+|.-.- -..+++++...++++++-+.+. ..+..++.....++. ....++.+++. ..|+++..+.
T Consensus 5 ~~~igiiG~G~~---g~~~~~~l~~~~~~~l~av~d~-~~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp 76 (330)
T 3e9m_A 5 KIRYGIMSTAQI---VPRFVAGLRESAQAEVRGIASR-RLENAQKMAKELAIP----VAYGSYEELCKDETIDIIYIPTY 76 (330)
T ss_dssp CEEEEECSCCTT---HHHHHHHHHHSSSEEEEEEBCS-SSHHHHHHHHHTTCC----CCBSSHHHHHHCTTCSEEEECCC
T ss_pred eEEEEEECchHH---HHHHHHHHHhCCCcEEEEEEeC-CHHHHHHHHHHcCCC----ceeCCHHHHhcCCCCCEEEEcCC
Confidence 345777764211 2346778888888877744432 233344444333321 12256777777 7899888776
Q ss_pred CcccchHHHHHHhcCCCeEEec
Q 017114 252 SETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 252 ~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
.....-.+.+++..|++|++-.
T Consensus 77 ~~~h~~~~~~al~~gk~vl~EK 98 (330)
T 3e9m_A 77 NQGHYSAAKLALSQGKPVLLEK 98 (330)
T ss_dssp GGGHHHHHHHHHHTTCCEEECS
T ss_pred CHHHHHHHHHHHHCCCeEEEeC
Confidence 5555566788999999999743
No 124
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=66.51 E-value=28 Score=23.76 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=58.9
Q ss_pred CceEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCC-cccchHHHHHHh---cCCCeEEe-
Q 017114 201 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV- 272 (377)
Q Consensus 201 ~~~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~~- 272 (377)
+.++.++.+.+. .+.+.......+......-+.++....+.. .|++++-... +.-|..+++.+. .+.|+|..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVIT 82 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 345666665442 333444433333222222233455555543 4677664332 223555565553 46787754
Q ss_pred cCCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 273 RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 273 ~~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
..... .+.+ +.|-.+++..|.+.+++.+++..++.
T Consensus 83 ~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 83 GHGDVPMAVEAM---KAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp CTTCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHH---HhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 33322 2233 55778999999999999999988764
No 125
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=66.50 E-value=11 Score=30.33 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=41.2
Q ss_pred eEEEEe-cCccHHHHHHhhc-CCCEEEccccCc-hhHHHHHh-cCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCC
Q 017114 203 RIAFIG-DGPYREELEKMFT-GMPAVFTGMLLG-EELSQAYA-SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 277 (377)
Q Consensus 203 ~l~i~G-~g~~~~~l~~~~~-~~~v~~~g~~~~-~~~~~~~~-~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~ 277 (377)
++.++| .|..-..+.+.+. ..+..+.+.+.. +++..++. .+|++|-.+..+..-.-+..++..|+|+|+...|..
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~~ 80 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFT 80 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCCCC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCCCC
Confidence 455666 3544444433332 223333333221 34555554 789998555555554455567899999997655533
No 126
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=66.38 E-value=6 Score=27.40 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=35.8
Q ss_pred CceEEEEecC-ccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 201 EARIAFIGDG-PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 201 ~~~l~i~G~g-~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
+..++|.|.= ..++++++++....-.+.+.|+ +..|++|.....+..+.++-.|..+|+|||.-
T Consensus 13 G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~~sVs--------kkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE 77 (113)
T 2cok_A 13 NMKILTLGKLSRNKDEVKAMIEKLGGKLTGTAN--------KASLCISTKKEVEKMNKKMEEVKEANIRVVSE 77 (113)
T ss_dssp SCEEEECSCCSSCHHHHHHHHHHTTCEEESCST--------TCSEEECCHHHHHHCCHHHHHHHHTTCCEECT
T ss_pred CCEEEEEecCCCCHHHHHHHHHHCCCEEcCccc--------cCccEEEECCCCCCCChHHHHHHHCCCcEEeH
Confidence 4455555521 1345555555554444555553 23455554422234577888888899888843
No 127
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=66.19 E-value=25 Score=24.67 Aligned_cols=108 Identities=9% Similarity=0.077 Sum_probs=57.3
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCCcccchHHHHHHh---cCCCeEEe-cC
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMS---SGIPVVGV-RA 274 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~e~~~~~~~Ea~a---~G~PvI~~-~~ 274 (377)
.+++++.+.+ ....+.......+......-+.++....+.. .|++++-...+.-|..+++.+. ..+|+|.. ..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEEEEECC
Confidence 3555555443 2334444444333333322223455454443 5776665421223444555443 35777654 33
Q ss_pred CCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCH
Q 017114 275 GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 312 (377)
Q Consensus 275 ~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 312 (377)
... .+.+ ..+..+++..|.+.+++.+++..++...
T Consensus 85 ~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 85 VDKDLIINSV---KAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp CCHHHHHHHH---HHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHH---HCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 222 2223 4466788999999999999999987653
No 128
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=66.14 E-value=28 Score=29.64 Aligned_cols=91 Identities=15% Similarity=0.104 Sum_probs=56.1
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhC-CCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEec
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMP 249 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l-~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~p 249 (377)
....+.++|--.- | ...++++... ++++++-+.+. ..+..++.....++.. ..++.++++ ..|+++..
T Consensus 12 ~~~rvgiiG~G~~--g-~~~~~~l~~~~~~~~lvav~d~-~~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~D~V~i~ 82 (354)
T 3q2i_A 12 RKIRFALVGCGRI--A-NNHFGALEKHADRAELIDVCDI-DPAALKAAVERTGARG-----HASLTDMLAQTDADIVILT 82 (354)
T ss_dssp SCEEEEEECCSTT--H-HHHHHHHHHTTTTEEEEEEECS-SHHHHHHHHHHHCCEE-----ESCHHHHHHHCCCSEEEEC
T ss_pred CcceEEEEcCcHH--H-HHHHHHHHhCCCCeEEEEEEcC-CHHHHHHHHHHcCCce-----eCCHHHHhcCCCCCEEEEC
Confidence 4456777775211 1 2455777777 78887744432 3344444444334422 245666676 68998887
Q ss_pred cCCcccchHHHHHHhcCCCeEEe
Q 017114 250 SESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 250 s~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
+........+.+++..|++|++-
T Consensus 83 tp~~~h~~~~~~al~~gk~v~~E 105 (354)
T 3q2i_A 83 TPSGLHPTQSIECSEAGFHVMTE 105 (354)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEEC
T ss_pred CCcHHHHHHHHHHHHCCCCEEEe
Confidence 76555556678899999999964
No 129
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=66.01 E-value=23 Score=25.00 Aligned_cols=66 Identities=18% Similarity=0.202 Sum_probs=41.1
Q ss_pred cCCEEEeccCC-cccchHHHHHHh---cCCCeEEec-CCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 242 SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGVR-AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 242 ~adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~~~-~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
..|++++-... +.-|..+++.+. ..+|||... .... .+.+ ..|-.+++..|.+.++|..+|..++.
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAM---RAGVRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHH---TTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHH---HhCCceeEcCCCCHHHHHHHHHHHHh
Confidence 45777664432 223445555543 357776543 3222 2234 56778899999999999999988865
No 130
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=65.24 E-value=32 Score=23.99 Aligned_cols=75 Identities=15% Similarity=0.107 Sum_probs=46.9
Q ss_pred hhHHHHHhc--CCEEEeccCC-cccchHHHHHHhc-----CCCeEEe-cCCCC---CccccccCCCCeeEEeCCCCHHHH
Q 017114 234 EELSQAYAS--GDVFVMPSES-ETLGLVVLEAMSS-----GIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDC 301 (377)
Q Consensus 234 ~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a~-----G~PvI~~-~~~~~---~~~~~~~~~~~~g~~~~~~~~~~l 301 (377)
++....+.. .|++++-... +.-|..+++.+.. ++|+|.. ..... .+.+ ..+-.+++..|.+.+++
T Consensus 44 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l 120 (143)
T 3cnb_A 44 FDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIV---ALGAETCFGKPLNFTLL 120 (143)
T ss_dssp HHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHH---HTTCSEEEESSCCHHHH
T ss_pred HHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHH---hcCCcEEEeCCCCHHHH
Confidence 444444443 5777765432 3345666766654 5677643 33322 2233 45677899999999999
Q ss_pred HHHHHHHhhC
Q 017114 302 LSKLEPLLYN 311 (377)
Q Consensus 302 ~~~i~~~~~~ 311 (377)
.+++..++..
T Consensus 121 ~~~i~~~~~~ 130 (143)
T 3cnb_A 121 EKTIKQLVEQ 130 (143)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 131
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=64.82 E-value=15 Score=30.89 Aligned_cols=95 Identities=13% Similarity=0.061 Sum_probs=55.0
Q ss_pred cCchhHHHHHhcCCEEEeccC-CcccchHHHHHHhcCCCeEEecCCCCCcc-ccc-cCC--CCeeEEeCCCCHHHHHHHH
Q 017114 231 LLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDI-IPE-DQD--GKIGYLFNPGDLDDCLSKL 305 (377)
Q Consensus 231 ~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~-~~~-~~~--~~~g~~~~~~~~~~l~~~i 305 (377)
-+...-..-++.||++|.-.. .|+|-.+++++.. +.++|....+ +... ..+ +.+ .+.-+..+|.+...+++.|
T Consensus 83 eptp~d~~~l~~ADlvv~nG~~lE~wl~k~~~~~~-~~~~v~~s~g-i~~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I 160 (321)
T 1xvl_A 83 EPTPSDIVKAQDADLILYNGMNLERWFEQFLGNVK-DVPSVVLTEG-IEPIPIADGPYTDKPNPHAWMSPRNALVYVENI 160 (321)
T ss_dssp CCCHHHHHHHHTCSEEEECCTTSSTTHHHHHHTSS-SCCEEETTTT-CCCCBCCSSSSTTSBCCCGGGSHHHHHHHHHHH
T ss_pred cCCHHHHHHHhcCCEEEECCCChHHHHHHHHHhcC-CCcEEEccCC-cccccccccCCCCCCCCCcCCCHHHHHHHHHHH
Confidence 333344567899999997653 6888888888776 6666644322 2111 000 001 1233455555666677777
Q ss_pred HHHhh--CHHHHHHHHHHHHHHHH
Q 017114 306 EPLLY--NQELRETMGQAARQEME 327 (377)
Q Consensus 306 ~~~~~--~~~~~~~~~~~~~~~~~ 327 (377)
.+.+. ||+......+|+..+.+
T Consensus 161 ~~~L~~~DP~~a~~Y~~Na~~~~~ 184 (321)
T 1xvl_A 161 RQAFVELDPDNAKYYNANAAVYSE 184 (321)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHCcccHHHHHHHHHHHHH
Confidence 66665 77766666666665543
No 132
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=64.70 E-value=30 Score=23.47 Aligned_cols=105 Identities=17% Similarity=0.196 Sum_probs=57.6
Q ss_pred eEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccCC-cccchHHHHHHh---cCCCeEEe-cC
Q 017114 203 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-RA 274 (377)
Q Consensus 203 ~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~~-~~ 274 (377)
++.++.+.+. .+.+.......+......-+.++....+. ..|++++-... +.-|..+++.+. ...|+|.. ..
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1srr_A 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAY 84 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESS
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEcc
Confidence 4566665432 33444444443333322222344444443 36887764432 223455555553 46777643 33
Q ss_pred CCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 275 GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 275 ~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
... .+.. ..+..+++..|.+.+++.+++..++.
T Consensus 85 ~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 85 GELDMIQESK---ELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp CCHHHHHHHH---HHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred CchHHHHHHH---hcChHhhccCCCCHHHHHHHHHHHhc
Confidence 322 2223 34667899999999999999988765
No 133
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=64.49 E-value=27 Score=29.28 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=49.8
Q ss_pred HHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCE-EEccccCchhHHHHH-hcCCEEEeccCCcccchHHHHHHhcCCC
Q 017114 191 FLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAY-ASGDVFVMPSESETLGLVVLEAMSSGIP 268 (377)
Q Consensus 191 ~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v-~~~g~~~~~~~~~~~-~~adi~v~ps~~e~~~~~~~Ea~a~G~P 268 (377)
.+++++...++++++-+.+ ...+..++.....++ .. ..++.+++ ...|+++..+........+.+|+..|++
T Consensus 15 ~~~~~l~~~~~~~~~~v~d-~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~al~~gk~ 88 (325)
T 2ho3_A 15 HFIEAAHTSGEYQLVAIYS-RKLETAATFASRYQNIQL-----FDQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKH 88 (325)
T ss_dssp HHHHHHHHTTSEEEEEEEC-SSHHHHHHHGGGSSSCEE-----ESCHHHHHTSSCSEEEECSCGGGHHHHHHHHHHTTCE
T ss_pred HHHHHHHhCCCeEEEEEEe-CCHHHHHHHHHHcCCCeE-----eCCHHHHhCCCCCEEEEeCChHHHHHHHHHHHHcCCc
Confidence 4567777777777764443 334445555544332 21 13555566 6789999887655556677889999999
Q ss_pred eEEec
Q 017114 269 VVGVR 273 (377)
Q Consensus 269 vI~~~ 273 (377)
|++-.
T Consensus 89 V~~EK 93 (325)
T 2ho3_A 89 VILEK 93 (325)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 99753
No 134
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=64.33 E-value=33 Score=23.84 Aligned_cols=107 Identities=10% Similarity=0.190 Sum_probs=59.6
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccC-Cc--ccchHHHHHHh---cCCCeEEe
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SE--TLGLVVLEAMS---SGIPVVGV 272 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~-~e--~~~~~~~Ea~a---~G~PvI~~ 272 (377)
.++.|+.+.+ ..+.+.......+..+...-+.++....+.. .|++++-.. .+ .-|..+++.+. ..+|+|..
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~ 86 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVM 86 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEE
Confidence 4566666443 2344455554444333322223444444433 466665433 23 34556666554 36787654
Q ss_pred -cCCC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 273 -RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 273 -~~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
.... ..+.+ ..+..+++..|.+.+++.++|.+++..
T Consensus 87 s~~~~~~~~~~~~---~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 87 ASSSDIPTAVRAM---RASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp ESSCCHHHHHHHH---HTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHH---HcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 3332 22334 557788999999999999999988653
No 135
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=64.18 E-value=32 Score=23.59 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=54.5
Q ss_pred CceEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHh---cCCCeEEec
Q 017114 201 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVR 273 (377)
Q Consensus 201 ~~~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~~~ 273 (377)
..++.++.+.+. ...+.......+......-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|+|...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t 86 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVIS 86 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 345566654432 233344333333222222233455555543 467666433 2334555665554 356776543
Q ss_pred -CCCC---CccccccCCCCeeEEeCCC-CHHHHHHHHHHHhhC
Q 017114 274 -AGGI---PDIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLYN 311 (377)
Q Consensus 274 -~~~~---~~~~~~~~~~~~g~~~~~~-~~~~l~~~i~~~~~~ 311 (377)
.... .+.+ ..|..+++..|. +.+.+.+++..++..
T Consensus 87 ~~~~~~~~~~~~---~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 87 ATENMADIAKAL---RLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp CCCCHHHHHHHH---HHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHH---HcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 3222 2233 456778899998 899999999988764
No 136
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=63.94 E-value=25 Score=30.86 Aligned_cols=97 Identities=8% Similarity=-0.076 Sum_probs=56.0
Q ss_pred CCCeEEEeecccc-cccHHHHHHHHHhCCCceEEE-EecCccHHHHHHhhcCCCEEEccccCchhHHHHHhc-------C
Q 017114 173 DKPLIVHVGRLGV-EKSLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS-------G 243 (377)
Q Consensus 173 ~~~~i~~~G~~~~-~k~~~~l~~a~~~l~~~~l~i-~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~-------a 243 (377)
.+..+..+|.-.. .-| ...+.++...++++++- +.+ ...+..++.+++.++. +.....++.++++. .
T Consensus 36 ~~~rvgiiG~G~~~~ig-~~h~~~~~~~~~~~lva~v~d-~~~~~a~~~a~~~g~~--~~~~~~~~~~ll~~~~~~~~~v 111 (417)
T 3v5n_A 36 KRIRLGMVGGGSGAFIG-AVHRIAARLDDHYELVAGALS-STPEKAEASGRELGLD--PSRVYSDFKEMAIREAKLKNGI 111 (417)
T ss_dssp CCEEEEEESCC--CHHH-HHHHHHHHHTSCEEEEEEECC-SSHHHHHHHHHHHTCC--GGGBCSCHHHHHHHHHHCTTCC
T ss_pred CcceEEEEcCCCchHHH-HHHHHHHhhCCCcEEEEEEeC-CCHHHHHHHHHHcCCC--cccccCCHHHHHhcccccCCCC
Confidence 4466788774320 011 23355666667777763 332 3344444444433321 00112466667765 8
Q ss_pred CEEEeccCCcccchHHHHHHhcCCCeEEec
Q 017114 244 DVFVMPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 244 di~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
|+++..+......-.+.+|+..|++|++-.
T Consensus 112 D~V~I~tp~~~H~~~~~~al~aGkhVl~EK 141 (417)
T 3v5n_A 112 EAVAIVTPNHVHYAAAKEFLKRGIHVICDK 141 (417)
T ss_dssp SEEEECSCTTSHHHHHHHHHTTTCEEEEES
T ss_pred cEEEECCCcHHHHHHHHHHHhCCCeEEEEC
Confidence 998887766666667889999999999753
No 137
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=63.38 E-value=34 Score=23.67 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=59.7
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc---CCEEEeccC-CcccchHHHHHHhc----CCCeEEe
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSE-SETLGLVVLEAMSS----GIPVVGV 272 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~---adi~v~ps~-~e~~~~~~~Ea~a~----G~PvI~~ 272 (377)
.+++|+.+.+ ..+.+.......+......-+.++....+.. .|++++-.. .+.-|..+++.+.. .+|+|..
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~ 87 (136)
T 3hdv_A 8 PLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVV 87 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEE
Confidence 4566666543 2334444443333333333333444444432 466665433 33446667776643 3677654
Q ss_pred c-CCC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCH
Q 017114 273 R-AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 312 (377)
Q Consensus 273 ~-~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 312 (377)
. ... ..+.+ ..+-.+++..|.+.+++.++|.++....
T Consensus 88 s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 88 SGDTDVEEAVDVM---HLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp ESSCCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred eCCCChHHHHHHH---hCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 3 322 22333 4577889999999999999999987654
No 138
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=63.28 E-value=26 Score=29.70 Aligned_cols=90 Identities=17% Similarity=0.049 Sum_probs=54.4
Q ss_pred eEEEeecccccccHHHHHHHHH-hCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCC
Q 017114 176 LIVHVGRLGVEKSLDFLKRVMD-RLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES 252 (377)
Q Consensus 176 ~i~~~G~~~~~k~~~~l~~a~~-~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~ 252 (377)
.+..+|--. -| ...++++. ..++++++-+.+. ..+..++..+..++. .....++.+++.. .|+++..+..
T Consensus 4 rigiIG~G~--~g-~~~~~~l~~~~~~~~l~av~d~-~~~~~~~~~~~~g~~---~~~~~~~~~ll~~~~~D~V~i~tp~ 76 (344)
T 3mz0_A 4 RIGVIGTGA--IG-KEHINRITNKLSGAEIVAVTDV-NQEAAQKVVEQYQLN---ATVYPNDDSLLADENVDAVLVTSWG 76 (344)
T ss_dssp EEEEECCSH--HH-HHHHHHHHHTCSSEEEEEEECS-SHHHHHHHHHHTTCC---CEEESSHHHHHHCTTCCEEEECSCG
T ss_pred EEEEECccH--HH-HHHHHHHHhhCCCcEEEEEEcC-CHHHHHHHHHHhCCC---CeeeCCHHHHhcCCCCCEEEECCCc
Confidence 456666411 11 24566676 6788877755432 344445544443320 1112566677776 8998887765
Q ss_pred cccchHHHHHHhcCCCeEEe
Q 017114 253 ETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 253 e~~~~~~~Ea~a~G~PvI~~ 272 (377)
....-.+.+++..|++|++-
T Consensus 77 ~~h~~~~~~al~~Gk~vl~E 96 (344)
T 3mz0_A 77 PAHESSVLKAIKAQKYVFCE 96 (344)
T ss_dssp GGHHHHHHHHHHTTCEEEEC
T ss_pred hhHHHHHHHHHHCCCcEEEc
Confidence 55566778999999999974
No 139
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=62.96 E-value=23 Score=29.97 Aligned_cols=94 Identities=13% Similarity=0.017 Sum_probs=57.6
Q ss_pred CCCCeEEEeecccccccHHHHHHHHHhC-CCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEe
Q 017114 172 PDKPLIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVM 248 (377)
Q Consensus 172 ~~~~~i~~~G~~~~~k~~~~l~~a~~~l-~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ 248 (377)
.++..++.+|--. ..-...++++... ++++++-+.+. ..+..++..++.++ . ....++.+++. ..|+++.
T Consensus 16 ~~~irvgiIG~G~--~~g~~~~~~l~~~~~~~~lvav~d~-~~~~~~~~a~~~~~--~--~~~~~~~~ll~~~~vD~V~i 88 (340)
T 1zh8_A 16 LRKIRLGIVGCGI--AARELHLPALKNLSHLFEITAVTSR-TRSHAEEFAKMVGN--P--AVFDSYEELLESGLVDAVDL 88 (340)
T ss_dssp CCCEEEEEECCSH--HHHHTHHHHHHTTTTTEEEEEEECS-SHHHHHHHHHHHSS--C--EEESCHHHHHHSSCCSEEEE
T ss_pred CCceeEEEEecCH--HHHHHHHHHHHhCCCceEEEEEEcC-CHHHHHHHHHHhCC--C--cccCCHHHHhcCCCCCEEEE
Confidence 4567788887421 1113456777777 77877655543 33444444433232 0 11256667776 4799888
Q ss_pred ccCCcccchHHHHHHhcCCCeEEe
Q 017114 249 PSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 249 ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
.+......-.+.+|+..|++|++-
T Consensus 89 ~tp~~~H~~~~~~al~aGkhVl~E 112 (340)
T 1zh8_A 89 TLPVELNLPFIEKALRKGVHVICE 112 (340)
T ss_dssp CCCGGGHHHHHHHHHHTTCEEEEE
T ss_pred eCCchHHHHHHHHHHHCCCcEEEe
Confidence 776555556778999999999975
No 140
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=62.55 E-value=36 Score=23.71 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=59.5
Q ss_pred eEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccCC-cccchHHHHHHh---cCCCeEEe-cC
Q 017114 203 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-RA 274 (377)
Q Consensus 203 ~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~~-~~ 274 (377)
+++++.+.+. .+.+.......+..+...-+.++....+. ..|++++-... +.-|..+++.+. ..+|+|.. ..
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESS
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEec
Confidence 5666665543 34455555444433332223345544443 36887765432 334555666654 35676644 33
Q ss_pred CCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 275 GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 275 ~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
... .+.+ +.|-.+++..|.+.+++..++..++.
T Consensus 86 ~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 86 GSVDLAVNLI---QKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp CCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHH---HCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 322 2233 45677899999999999999987754
No 141
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=62.46 E-value=36 Score=23.64 Aligned_cols=66 Identities=9% Similarity=0.155 Sum_probs=40.3
Q ss_pred CCEEEeccCC-cccchHHHHHHhc---CCCeEEe--cCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCH
Q 017114 243 GDVFVMPSES-ETLGLVVLEAMSS---GIPVVGV--RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 312 (377)
Q Consensus 243 adi~v~ps~~-e~~~~~~~Ea~a~---G~PvI~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 312 (377)
.|++++-... +.-|..+++.+.. ++|+|.. ....... . . .- ..+++..|.+.+++..++..++...
T Consensus 61 ~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~-~-~-~~-~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 61 CDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHELIE-S-S-EH-NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp CSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--CCC-C-S-SS-CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCCHHH-H-H-HH-HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 5777764432 2345667777653 5676643 3332222 2 1 11 5788999999999999999887653
No 142
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=62.04 E-value=12 Score=29.81 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=28.5
Q ss_pred hhHHHHHhcCCEEEeccCCc-----------ccchHHHHHHhcCCCeEEecC
Q 017114 234 EELSQAYASGDVFVMPSESE-----------TLGLVVLEAMSSGIPVVGVRA 274 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~~e-----------~~~~~~~Ea~a~G~PvI~~~~ 274 (377)
++..+.+.+||.+++|- .+ ++-..+-|+...|+|++.+..
T Consensus 71 ~d~~~~l~~ad~I~lpG-G~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sA 121 (229)
T 1fy2_A 71 ADPLAAIEKAEIIIVGG-GNTFQLLKESRERGLLAPMADRVKRGALYIGWSA 121 (229)
T ss_dssp SCHHHHHHHCSEEEECC-SCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETH
T ss_pred ccHHHHHhcCCEEEECC-CcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECH
Confidence 34557788899999886 22 334467788889999997653
No 143
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=61.96 E-value=20 Score=24.99 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=39.4
Q ss_pred CCEEEeccC-CcccchHHHHHHhc---CCCeEEec-CCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 243 GDVFVMPSE-SETLGLVVLEAMSS---GIPVVGVR-AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 243 adi~v~ps~-~e~~~~~~~Ea~a~---G~PvI~~~-~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.|++++-.. .+.-|..+++.+.. .+|+|... .... .+.+ +.+..+++..|.+++++..++..++.
T Consensus 60 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 60 PGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDELTSEQTRVLV---RMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp CSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCCCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred CCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHH---HcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 466665332 22334444544432 67877543 3322 2233 45678899999999999999988765
No 144
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=61.37 E-value=51 Score=25.00 Aligned_cols=68 Identities=18% Similarity=0.279 Sum_probs=41.9
Q ss_pred CCEEEeccCC-cccchHHHHHHhc--CCCeEEe-cCCC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHH
Q 017114 243 GDVFVMPSES-ETLGLVVLEAMSS--GIPVVGV-RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQE 313 (377)
Q Consensus 243 adi~v~ps~~-e~~~~~~~Ea~a~--G~PvI~~-~~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~ 313 (377)
.|++++-... +.-|..+++.+.. ..|||.. .... ..+.+ ..|-.+++..|.+.+++..+|..++....
T Consensus 59 ~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt~~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 133 (205)
T 1s8n_A 59 PDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERAR---DAGAMAYLVKPFSISDLIPAIELAVSRFR 133 (205)
T ss_dssp CSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEEEGGGHHHHHTTG---GGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEecCCCHHHHHHHH---hcCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 5777664332 2335556665532 3466643 3222 22333 45677899999999999999998876543
No 145
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=61.33 E-value=29 Score=29.67 Aligned_cols=90 Identities=18% Similarity=0.144 Sum_probs=54.6
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEecc
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPS 250 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps 250 (377)
+...+..+|--. -|....+.++...++++++-+.+.. .+...+. ...+.. ..++.+++. ..|+++..+
T Consensus 6 ~~~rvgiiG~G~--~g~~~~~~~l~~~~~~~l~av~d~~-~~~~~~~--~~~~~~-----~~~~~~ll~~~~~D~V~i~t 75 (364)
T 3e82_A 6 NTINIALIGYGF--VGKTFHAPLIRSVPGLNLAFVASRD-EEKVKRD--LPDVTV-----IASPEAAVQHPDVDLVVIAS 75 (364)
T ss_dssp -CEEEEEECCSH--HHHHTHHHHHHTSTTEEEEEEECSC-HHHHHHH--CTTSEE-----ESCHHHHHTCTTCSEEEECS
T ss_pred CcceEEEECCCH--HHHHHHHHHHhhCCCeEEEEEEcCC-HHHHHhh--CCCCcE-----ECCHHHHhcCCCCCEEEEeC
Confidence 345677777521 1222356777788888887555432 2333321 112221 256677777 688888877
Q ss_pred CCcccchHHHHHHhcCCCeEEe
Q 017114 251 ESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
......-.+.+|+..|++|++-
T Consensus 76 p~~~H~~~~~~al~aGk~Vl~E 97 (364)
T 3e82_A 76 PNATHAPLARLALNAGKHVVVD 97 (364)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEC
T ss_pred ChHHHHHHHHHHHHCCCcEEEe
Confidence 6555556688999999999974
No 146
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=61.17 E-value=40 Score=23.74 Aligned_cols=108 Identities=21% Similarity=0.204 Sum_probs=60.2
Q ss_pred CceEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHh-------cCCCe
Q 017114 201 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-------SGIPV 269 (377)
Q Consensus 201 ~~~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a-------~G~Pv 269 (377)
..++.|+.+.+. ...+.......+......-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|+
T Consensus 14 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pi 93 (143)
T 3m6m_D 14 SMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPV 93 (143)
T ss_dssp -CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeE
Confidence 456777765442 344444444443332223333555555543 577776443 2334666766663 23677
Q ss_pred EEecCCCCC----ccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 270 VGVRAGGIP----DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 270 I~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
|........ +.. ..|-.+++..|.+.+++.+++..+...
T Consensus 94 i~~s~~~~~~~~~~~~---~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 94 VVLSADVTPEAIRACE---QAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp EEEESCCCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEeCCCCHHHHHHHH---HcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 754333222 223 457788999999999999999887643
No 147
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=61.15 E-value=22 Score=26.69 Aligned_cols=107 Identities=13% Similarity=0.188 Sum_probs=57.1
Q ss_pred ceEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHh---cCCCeEEe-c
Q 017114 202 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-R 273 (377)
Q Consensus 202 ~~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~~-~ 273 (377)
.++.|+.+.+. ...+.......+....-.-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|||.- .
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~ 87 (184)
T 3rqi_A 8 KNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTG 87 (184)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEES
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeC
Confidence 45555554432 233333333323222222222444444443 467666432 2334556666553 36777654 3
Q ss_pred CCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 274 AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 274 ~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
.... .+.+ ..|-.+++..|.+.+++..+|..++..
T Consensus 88 ~~~~~~~~~a~---~~Ga~~~l~KP~~~~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 88 YASIATAVQAV---KDGADNYLAKPANVESILAALQTNASE 125 (184)
T ss_dssp SCCHHHHHHHH---HHTCSEEEESSCCHHHHHHHTSTTHHH
T ss_pred CCCHHHHHHHH---HhCHHHheeCCCCHHHHHHHHHHHHHH
Confidence 3322 2233 456778999999999999999887653
No 148
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=60.79 E-value=58 Score=25.47 Aligned_cols=106 Identities=17% Similarity=0.201 Sum_probs=58.2
Q ss_pred ceEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccCC-cccchHHHHHHhc--CCCeEEe-cC
Q 017114 202 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMSS--GIPVVGV-RA 274 (377)
Q Consensus 202 ~~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a~--G~PvI~~-~~ 274 (377)
.+++|+.+.+. .+.+.......+......-+.++....+. ..|++++-... +.-|..+++.+.. ++|||.- ..
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEET
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCC
Confidence 35566665432 23333333322322222222244444443 35777765432 3335566666543 6787743 33
Q ss_pred CCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 275 GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 275 ~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
... ...+ ..|..+++..|.+++++.++|..++.
T Consensus 86 ~~~~~~~~~~---~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 86 TDTVDVVLGL---ESGADDYIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp TCCSCHHHHH---HTTCCEEEEESCCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHH---HCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 322 2333 56778899999999999999998764
No 149
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=60.52 E-value=43 Score=23.85 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=44.5
Q ss_pred hhHHHHHhc--CCEEEeccC-CcccchHHHHHHh---cCCCeEEecC-CCC---CccccccCCC-CeeEEeCCCCHHHHH
Q 017114 234 EELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVRA-GGI---PDIIPEDQDG-KIGYLFNPGDLDDCL 302 (377)
Q Consensus 234 ~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~~~~-~~~---~~~~~~~~~~-~~g~~~~~~~~~~l~ 302 (377)
++....+.. .|++++-.. .+.-|..+++.+. ..+|||.... ... .+.+ ..+ -.+++..|.+.+++.
T Consensus 48 ~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~---~~g~~~~~l~KP~~~~~l~ 124 (153)
T 3hv2_A 48 TQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPDLKLIAKAI---NEGEIYRYLSKPWDDQELL 124 (153)
T ss_dssp HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHHHH---HTTCCSEEECSSCCHHHHH
T ss_pred HHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHHHH---hCCCcceEEeCCCCHHHHH
Confidence 344444333 477766443 2333555555553 4677775433 221 2233 445 578999999999999
Q ss_pred HHHHHHhhC
Q 017114 303 SKLEPLLYN 311 (377)
Q Consensus 303 ~~i~~~~~~ 311 (377)
.+|..++..
T Consensus 125 ~~i~~~l~~ 133 (153)
T 3hv2_A 125 LALRQALEH 133 (153)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988763
No 150
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=60.46 E-value=18 Score=30.74 Aligned_cols=93 Identities=12% Similarity=-0.006 Sum_probs=58.8
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEecc
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPS 250 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps 250 (377)
....+..+|.-. -|-...+.+++..++++++-+.+. ..+..++.+++.++. -...++.++++. .|+++..+
T Consensus 22 ~mirigiIG~G~--ig~~~~~~~~~~~~~~~lvav~d~-~~~~a~~~a~~~g~~----~~y~d~~ell~~~~iDaV~I~t 94 (350)
T 4had_A 22 SMLRFGIISTAK--IGRDNVVPAIQDAENCVVTAIASR-DLTRAREMADRFSVP----HAFGSYEEMLASDVIDAVYIPL 94 (350)
T ss_dssp CCEEEEEESCCH--HHHHTHHHHHHHCSSEEEEEEECS-SHHHHHHHHHHHTCS----EEESSHHHHHHCSSCSEEEECS
T ss_pred CccEEEEEcChH--HHHHHHHHHHHhCCCeEEEEEECC-CHHHHHHHHHHcCCC----eeeCCHHHHhcCCCCCEEEEeC
Confidence 335677777421 122346788888899888766543 344455555443331 012466667765 68888877
Q ss_pred CCcccchHHHHHHhcCCCeEEe
Q 017114 251 ESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
....-.-.+.+|+..|++|++-
T Consensus 95 P~~~H~~~~~~al~aGkhVl~E 116 (350)
T 4had_A 95 PTSQHIEWSIKAADAGKHVVCE 116 (350)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEC
T ss_pred CCchhHHHHHHHHhcCCEEEEe
Confidence 6555566788999999999974
No 151
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=60.25 E-value=18 Score=30.60 Aligned_cols=78 Identities=9% Similarity=0.075 Sum_probs=48.3
Q ss_pred HHHHHHHhCCC--ceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccCCcccchHHHHHHhcC
Q 017114 191 FLKRVMDRLPE--ARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSESETLGLVVLEAMSSG 266 (377)
Q Consensus 191 ~l~~a~~~l~~--~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~~e~~~~~~~Ea~a~G 266 (377)
..++++..+++ ++++-+.+ ...+..++.++..++. ....++.+++. ..|+++..+......-.+.+|+..|
T Consensus 16 ~~~~~l~~~~~~~~~l~av~d-~~~~~a~~~a~~~~~~----~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~al~~G 90 (334)
T 3ohs_X 16 DFTAVLQTLPRSEHQVVAVAA-RDLSRAKEFAQKHDIP----KAYGSYEELAKDPNVEVAYVGTQHPQHKAAVMLCLAAG 90 (334)
T ss_dssp HHHHHHTTSCTTTEEEEEEEC-SSHHHHHHHHHHHTCS----CEESSHHHHHHCTTCCEEEECCCGGGHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCeEEEEEEc-CCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEECCCcHHHHHHHHHHHhcC
Confidence 46777777764 45554443 3344444444432321 01256677777 5899888776555566688999999
Q ss_pred CCeEEec
Q 017114 267 IPVVGVR 273 (377)
Q Consensus 267 ~PvI~~~ 273 (377)
++|++-.
T Consensus 91 khVl~EK 97 (334)
T 3ohs_X 91 KAVLCEK 97 (334)
T ss_dssp CEEEEES
T ss_pred CEEEEEC
Confidence 9999753
No 152
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=59.85 E-value=47 Score=28.33 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=54.8
Q ss_pred CCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccC
Q 017114 174 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE 251 (377)
Q Consensus 174 ~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~ 251 (377)
+..+..+|--.- | ...++++...++++++-+.+.. .+..+ .+...++. ...++.++++ ..|+++..+.
T Consensus 5 ~~~vgiiG~G~~--g-~~~~~~l~~~~~~~l~av~d~~-~~~~~-~a~~~g~~-----~~~~~~~ll~~~~~D~V~i~tp 74 (359)
T 3e18_A 5 KYQLVIVGYGGM--G-SYHVTLASAADNLEVHGVFDIL-AEKRE-AAAQKGLK-----IYESYEAVLADEKVDAVLIATP 74 (359)
T ss_dssp CEEEEEECCSHH--H-HHHHHHHHTSTTEEEEEEECSS-HHHHH-HHHTTTCC-----BCSCHHHHHHCTTCCEEEECSC
T ss_pred cCcEEEECcCHH--H-HHHHHHHHhCCCcEEEEEEcCC-HHHHH-HHHhcCCc-----eeCCHHHHhcCCCCCEEEEcCC
Confidence 345777764211 1 2456677777888876554432 23332 23344442 1256777777 6899888776
Q ss_pred CcccchHHHHHHhcCCCeEEe
Q 017114 252 SETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 252 ~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
.....-.+.+|+..|++|++-
T Consensus 75 ~~~h~~~~~~al~aGkhVl~E 95 (359)
T 3e18_A 75 NDSHKELAISALEAGKHVVCE 95 (359)
T ss_dssp GGGHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHHHHCCCCEEee
Confidence 555556678999999999964
No 153
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=59.79 E-value=42 Score=23.52 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=42.4
Q ss_pred cCCEEEeccCC-cccchHHHHHHh-----cCCCeEEec-CCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 242 SGDVFVMPSES-ETLGLVVLEAMS-----SGIPVVGVR-AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 242 ~adi~v~ps~~-e~~~~~~~Ea~a-----~G~PvI~~~-~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
..|++++-... +.-|..+++.+. ..+|+|... .... .+.+ ..+-.+++..|.+.+++.+++..++.
T Consensus 62 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 62 RPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICY---SYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHHH---HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHHH---HCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 35777765432 334566777765 456776543 3221 2233 45667899999999999999988754
No 154
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=58.13 E-value=22 Score=30.22 Aligned_cols=91 Identities=7% Similarity=0.026 Sum_probs=56.5
Q ss_pred CCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHH--hcCCEEEeccC
Q 017114 174 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAY--ASGDVFVMPSE 251 (377)
Q Consensus 174 ~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~--~~adi~v~ps~ 251 (377)
+..+..+|--. -| ...++++...++++++-+.+. ..+..++.....++.. ..++.+++ ...|+++..+.
T Consensus 5 ~~~vgiiG~G~--~g-~~~~~~l~~~~~~~lvav~d~-~~~~~~~~~~~~g~~~-----~~~~~~~l~~~~~D~V~i~tp 75 (354)
T 3db2_A 5 PVGVAAIGLGR--WA-YVMADAYTKSEKLKLVTCYSR-TEDKREKFGKRYNCAG-----DATMEALLAREDVEMVIITVP 75 (354)
T ss_dssp CEEEEEECCSH--HH-HHHHHHHTTCSSEEEEEEECS-SHHHHHHHHHHHTCCC-----CSSHHHHHHCSSCCEEEECSC
T ss_pred cceEEEEccCH--HH-HHHHHHHHhCCCcEEEEEECC-CHHHHHHHHHHcCCCC-----cCCHHHHhcCCCCCEEEEeCC
Confidence 34577776421 11 346778888888887654432 3344444443323321 35677777 45889888776
Q ss_pred CcccchHHHHHHhcCCCeEEec
Q 017114 252 SETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 252 ~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
.......+.+++..|++|++-.
T Consensus 76 ~~~h~~~~~~al~~gk~vl~EK 97 (354)
T 3db2_A 76 NDKHAEVIEQCARSGKHIYVEK 97 (354)
T ss_dssp TTSHHHHHHHHHHTTCEEEEES
T ss_pred hHHHHHHHHHHHHcCCEEEEcc
Confidence 5555666788999999999753
No 155
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=57.98 E-value=45 Score=24.66 Aligned_cols=37 Identities=16% Similarity=0.018 Sum_probs=25.9
Q ss_pred HHHHhcCCEEEeccC----CcccchHHHH---HHhcCCCeEEec
Q 017114 237 SQAYASGDVFVMPSE----SETLGLVVLE---AMSSGIPVVGVR 273 (377)
Q Consensus 237 ~~~~~~adi~v~ps~----~e~~~~~~~E---a~a~G~PvI~~~ 273 (377)
...+..||++|.-.. .+.-+.+.+| |.|.|+|||+-.
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 578999999887532 1233456666 679999999854
No 156
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=57.96 E-value=36 Score=28.49 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=51.3
Q ss_pred eEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCccc
Q 017114 176 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETL 255 (377)
Q Consensus 176 ~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~ 255 (377)
.+.++|.- .-|...+++++...++++++ +.+ ...+..++..+..++.. -+.+..++. -..+|+++..+.....
T Consensus 4 ~igiIG~G--~ig~~~~~~~l~~~~~~~l~-v~d-~~~~~~~~~a~~~g~~~-~~~~~~~~l--~~~~D~V~i~tp~~~h 76 (323)
T 1xea_A 4 KIAMIGLG--DIAQKAYLPVLAQWPDIELV-LCT-RNPKVLGTLATRYRVSA-TCTDYRDVL--QYGVDAVMIHAATDVH 76 (323)
T ss_dssp EEEEECCC--HHHHHTHHHHHTTSTTEEEE-EEC-SCHHHHHHHHHHTTCCC-CCSSTTGGG--GGCCSEEEECSCGGGH
T ss_pred EEEEECCC--HHHHHHHHHHHHhCCCceEE-EEe-CCHHHHHHHHHHcCCCc-cccCHHHHh--hcCCCEEEEECCchhH
Confidence 45666631 11222366777777888888 443 23344444444333321 022222322 2678999887765555
Q ss_pred chHHHHHHhcCCCeEEe
Q 017114 256 GLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 256 ~~~~~Ea~a~G~PvI~~ 272 (377)
...+.+++..|++|++-
T Consensus 77 ~~~~~~al~~Gk~V~~E 93 (323)
T 1xea_A 77 STLAAFFLHLGIPTFVD 93 (323)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHCCCeEEEe
Confidence 66677899999999864
No 157
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=57.79 E-value=51 Score=25.19 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=38.4
Q ss_pred cCCEEEeccC-CcccchHHHHHHh-------cCCCeEEec-CC-C---CCccccccCCCCeeEEeCCCCHHHHHHHHHHH
Q 017114 242 SGDVFVMPSE-SETLGLVVLEAMS-------SGIPVVGVR-AG-G---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 308 (377)
Q Consensus 242 ~adi~v~ps~-~e~~~~~~~Ea~a-------~G~PvI~~~-~~-~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~ 308 (377)
..|++|+-.. .+.-|..+++.+. ..+|||... .. . ..+.+ ..+..+++..|.+ +|.++|..+
T Consensus 119 ~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~---~~Ga~~~l~KP~~--~L~~~i~~~ 193 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETI---QAGMDAFLDKSLN--QLANVIREI 193 (206)
T ss_dssp SCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHH---HHTCSEEEETTCT--THHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHH---hCCCCEEEcCcHH--HHHHHHHHH
Confidence 3577776443 2333555666554 467887543 22 2 11223 4466788888877 899999988
Q ss_pred hhCH
Q 017114 309 LYNQ 312 (377)
Q Consensus 309 ~~~~ 312 (377)
+...
T Consensus 194 l~~~ 197 (206)
T 3mm4_A 194 ESKR 197 (206)
T ss_dssp C---
T ss_pred Hhhh
Confidence 7653
No 158
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=57.60 E-value=14 Score=31.29 Aligned_cols=86 Identities=9% Similarity=-0.096 Sum_probs=55.0
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhc---CCEEEec
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMP 249 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~---adi~v~p 249 (377)
.+..++.+|--. -+....++++...++++++-+.+... ...++.. ..++.++++. .|+++..
T Consensus 24 ~~~rvgiiG~G~--ig~~~~~~~l~~~~~~~lvav~d~~~--------~~~g~~~-----~~~~~~ll~~~~~vD~V~i~ 88 (330)
T 4ew6_A 24 SPINLAIVGVGK--IVRDQHLPSIAKNANFKLVATASRHG--------TVEGVNS-----YTTIEAMLDAEPSIDAVSLC 88 (330)
T ss_dssp CCEEEEEECCSH--HHHHTHHHHHHHCTTEEEEEEECSSC--------CCTTSEE-----ESSHHHHHHHCTTCCEEEEC
T ss_pred CCceEEEEecCH--HHHHHHHHHHHhCCCeEEEEEEeCCh--------hhcCCCc-----cCCHHHHHhCCCCCCEEEEe
Confidence 456788887421 12235778888888888776554321 1123332 2455566655 8998887
Q ss_pred cCCcccchHHHHHHhcCCCeEEec
Q 017114 250 SESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 250 s~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
+......-.+.+|+..|++|++-.
T Consensus 89 tp~~~H~~~~~~al~aGkhVl~EK 112 (330)
T 4ew6_A 89 MPPQYRYEAAYKALVAGKHVFLEK 112 (330)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEECS
T ss_pred CCcHHHHHHHHHHHHcCCcEEEeC
Confidence 765555567889999999999653
No 159
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=57.49 E-value=36 Score=23.24 Aligned_cols=38 Identities=18% Similarity=0.262 Sum_probs=19.1
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhC---------CCceEEEEecCc
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRL---------PEARIAFIGDGP 211 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l---------~~~~l~i~G~g~ 211 (377)
....|++.|.+... .-+.+.+.++.+ .+..++|+|..+
T Consensus 34 ~G~~~v~TG~l~~~-~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~ 80 (109)
T 2k6g_A 34 EGLIFVITGVLESI-ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDS 80 (109)
T ss_dssp TTCEEEEESBCSSC-CHHHHHHHHHHTTCEEESSCCTTCCEEEECBCC
T ss_pred CCCEEEEeeeCCCC-CHHHHHHHHHHcCCEeeCcccCCceEEEECCCC
Confidence 44567778877431 122333333333 245666777544
No 160
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=57.33 E-value=70 Score=25.27 Aligned_cols=65 Identities=17% Similarity=0.274 Sum_probs=42.3
Q ss_pred CCEEEeccC-CcccchHHHHHHh---cCCCeEEe-cCCCCC---ccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 243 GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-RAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 243 adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~~-~~~~~~---~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.|++++-.. .+.-|..+++.+. ..+|||.- ...... +.+ +.|-.+++..|.+.+++.++|..++.
T Consensus 68 ~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~---~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 68 PDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGL---TLGGDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHH---TSTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHH---HcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 577776433 2334556666654 35777654 333222 234 56778999999999999999998865
No 161
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=57.28 E-value=51 Score=28.11 Aligned_cols=93 Identities=14% Similarity=0.025 Sum_probs=56.5
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEecc
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPS 250 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps 250 (377)
++..+..+|-- .-+...++.++.. ++++++-+.+. ..+..++.+++.++ .....++.++++. .|+++..+
T Consensus 25 ~~irvgiiG~G--~~~~~~~~~~~~~-~~~~lvav~d~-~~~~a~~~a~~~~~----~~~~~~~~~ll~~~~vD~V~I~t 96 (361)
T 3u3x_A 25 DELRFAAVGLN--HNHIYGQVNCLLR-AGARLAGFHEK-DDALAAEFSAVYAD----ARRIATAEEILEDENIGLIVSAA 96 (361)
T ss_dssp -CCEEEEECCC--STTHHHHHHHHHH-TTCEEEEEECS-CHHHHHHHHHHSSS----CCEESCHHHHHTCTTCCEEEECC
T ss_pred cCcEEEEECcC--HHHHHHHHHHhhc-CCcEEEEEEcC-CHHHHHHHHHHcCC----CcccCCHHHHhcCCCCCEEEEeC
Confidence 45678888842 2234455666653 78887766543 34444444443321 1112567777775 78888776
Q ss_pred CCcccchHHHHHHhcCCCeEEec
Q 017114 251 ESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
....-.-.+.+|+..|++|++-.
T Consensus 97 p~~~H~~~~~~al~aGkhVl~EK 119 (361)
T 3u3x_A 97 VSSERAELAIRAMQHGKDVLVDK 119 (361)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEES
T ss_pred ChHHHHHHHHHHHHCCCeEEEeC
Confidence 54444556889999999999753
No 162
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=56.91 E-value=47 Score=23.15 Aligned_cols=104 Identities=14% Similarity=0.168 Sum_probs=58.0
Q ss_pred CceEEEEecCcc-HHHHHHhhcC--C--CEEEccccCchhHHHHHh--------cCCEEEeccCC-cccchHHHHHHh--
Q 017114 201 EARIAFIGDGPY-REELEKMFTG--M--PAVFTGMLLGEELSQAYA--------SGDVFVMPSES-ETLGLVVLEAMS-- 264 (377)
Q Consensus 201 ~~~l~i~G~g~~-~~~l~~~~~~--~--~v~~~g~~~~~~~~~~~~--------~adi~v~ps~~-e~~~~~~~Ea~a-- 264 (377)
..+++++.+.+. .+.+...... . .+.... +.++....+. ..|++++-... +.-|..+++.+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~--~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~ 84 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAK--SGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDD 84 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEES--SHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTS
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEEC--CHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcC
Confidence 356666665442 2333333332 1 233322 2255555554 36887765432 334566777665
Q ss_pred ---cCCCeEEe-cCCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 265 ---SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 265 ---~G~PvI~~-~~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
.++|+|.. ..... .+.+ ..+-.+++..|.+.+++.+++....
T Consensus 85 ~~~~~~~ii~ls~~~~~~~~~~~~---~~g~~~~l~kP~~~~~L~~~~~~~~ 133 (143)
T 2qvg_A 85 SSFTDIEVFVLTAAYTSKDKLAFE---SLNIRGHLIKPLDYGEAIKLFWILQ 133 (143)
T ss_dssp GGGTTCEEEEEESCCCHHHHHHHT---TTTCCEEEESSCCHHHHHHHHHHHH
T ss_pred ccccCCcEEEEeCCCCHHHHHHHH---hcCCCeEEECCCCHHHHHHHHHHHH
Confidence 45777654 33222 2233 5567789999999999999976543
No 163
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=56.72 E-value=36 Score=26.22 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=58.9
Q ss_pred eEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccC-CcccchHHHHHHh---cCCCeEEec-CCC
Q 017114 203 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVR-AGG 276 (377)
Q Consensus 203 ~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~~~-~~~ 276 (377)
++.++.+.+ ..+.+.......+ .....-+.++....+...|++++-.. .+.-|..+++.+. ..+|+|... ...
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~ 82 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTLLSD 82 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCS
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 455666544 2344455554443 22222222444444456788877443 2334555666554 467877543 222
Q ss_pred C---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 277 I---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 277 ~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
. .+.+ ..+..+++..|.+++++.+++..++.
T Consensus 83 ~~~~~~~~---~~ga~~~l~Kp~~~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 83 DESVLKGF---EAGADDYVTKPFNPEILLARVKRFLE 116 (220)
T ss_dssp HHHHHHHH---HHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 1 2233 44667899999999999999988764
No 164
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=56.44 E-value=23 Score=29.73 Aligned_cols=86 Identities=13% Similarity=0.031 Sum_probs=48.6
Q ss_pred CeEEEeecccccccHHHHHHHHHhCCCceEEEEec-CccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCc
Q 017114 175 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGD-GPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 253 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~-g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e 253 (377)
..+..+|. +. -| ..+++++...++++++.+-+ .+.. +.. .++... +++.+++..+|+++..+...
T Consensus 4 irV~IiG~-G~-mG-~~~~~~l~~~~~~elvav~d~~~~~----~~~--~gv~~~-----~d~~~ll~~~DvViiatp~~ 69 (320)
T 1f06_A 4 IRVAIVGY-GN-LG-RSVEKLIAKQPDMDLVGIFSRRATL----DTK--TPVFDV-----ADVDKHADDVDVLFLCMGSA 69 (320)
T ss_dssp EEEEEECC-SH-HH-HHHHHHHTTCSSEEEEEEEESSSCC----SSS--SCEEEG-----GGGGGTTTTCSEEEECSCTT
T ss_pred CEEEEEee-cH-HH-HHHHHHHhcCCCCEEEEEEcCCHHH----hhc--CCCcee-----CCHHHHhcCCCEEEEcCCcH
Confidence 45666663 11 12 34667777777777764432 2221 111 233321 34444557899999876544
Q ss_pred ccchHHHHHHhcCCCeEEecC
Q 017114 254 TLGLVVLEAMSSGIPVVGVRA 274 (377)
Q Consensus 254 ~~~~~~~Ea~a~G~PvI~~~~ 274 (377)
..--.+..++..|++||++..
T Consensus 70 ~h~~~~~~al~aG~~Vv~ekp 90 (320)
T 1f06_A 70 TDIPEQAPKFAQFACTVDTYD 90 (320)
T ss_dssp THHHHHHHHHTTTSEEECCCC
T ss_pred HHHHHHHHHHHCCCEEEECCC
Confidence 334456788999999997653
No 165
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=55.90 E-value=32 Score=29.34 Aligned_cols=89 Identities=19% Similarity=0.120 Sum_probs=53.5
Q ss_pred CCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccC
Q 017114 174 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE 251 (377)
Q Consensus 174 ~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~ 251 (377)
+..+..+|--. -|....+.++...++++++-+.+... +.+.+... .+.. ..++.+++. ..|+++..+.
T Consensus 5 ~~rvgiiG~G~--~g~~~~~~~l~~~~~~~l~av~d~~~-~~~~~~~~--~~~~-----~~~~~~ll~~~~vD~V~i~tp 74 (358)
T 3gdo_A 5 TIKVGILGYGL--SGSVFHGPLLDVLDEYQISKIMTSRT-EEVKRDFP--DAEV-----VHELEEITNDPAIELVIVTTP 74 (358)
T ss_dssp CEEEEEECCSH--HHHHTTHHHHTTCTTEEEEEEECSCH-HHHHHHCT--TSEE-----ESSTHHHHTCTTCCEEEECSC
T ss_pred cceEEEEccCH--HHHHHHHHHHhhCCCeEEEEEEcCCH-HHHHhhCC--CCce-----ECCHHHHhcCCCCCEEEEcCC
Confidence 34567776421 11223566777778888775554332 33322211 2222 245666776 6789888776
Q ss_pred CcccchHHHHHHhcCCCeEEe
Q 017114 252 SETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 252 ~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
.....-.+.+|+..|++|++-
T Consensus 75 ~~~H~~~~~~al~aGkhVl~E 95 (358)
T 3gdo_A 75 SGLHYEHTMACIQAGKHVVME 95 (358)
T ss_dssp TTTHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHHHHcCCeEEEe
Confidence 555566788999999999974
No 166
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=55.47 E-value=20 Score=31.09 Aligned_cols=90 Identities=14% Similarity=0.045 Sum_probs=54.0
Q ss_pred CeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCC
Q 017114 175 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES 252 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~ 252 (377)
..+..+|--. ..-...+.++...++++++-+.+. ..+..++...+.++.. ..++.++++. .|+++..+..
T Consensus 3 ~rigiiG~G~--~~~~~~~~~l~~~~~~~l~av~d~-~~~~~~~~a~~~g~~~-----~~~~~ell~~~~vD~V~i~tp~ 74 (387)
T 3moi_A 3 IRFGICGLGF--AGSVLMAPAMRHHPDAQIVAACDP-NEDVRERFGKEYGIPV-----FATLAEMMQHVQMDAVYIASPH 74 (387)
T ss_dssp EEEEEECCSH--HHHTTHHHHHHHCTTEEEEEEECS-CHHHHHHHHHHHTCCE-----ESSHHHHHHHSCCSEEEECSCG
T ss_pred eEEEEEeCCH--HHHHHHHHHHHhCCCeEEEEEEeC-CHHHHHHHHHHcCCCe-----ECCHHHHHcCCCCCEEEEcCCc
Confidence 3466666320 112335666777788877755543 2333333333333321 2466667765 8999887765
Q ss_pred cccchHHHHHHhcCCCeEEe
Q 017114 253 ETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 253 e~~~~~~~Ea~a~G~PvI~~ 272 (377)
....-.+.+|+..|++|++-
T Consensus 75 ~~H~~~~~~al~aGk~Vl~E 94 (387)
T 3moi_A 75 QFHCEHVVQASEQGLHIIVE 94 (387)
T ss_dssp GGHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHCCCceeee
Confidence 55556788999999999964
No 167
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=55.35 E-value=46 Score=22.60 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=45.5
Q ss_pred hhHHHHHhc--CCEEEeccC-CcccchHHHHHHhc-----CCCeEEe-cCCCC---CccccccCCCCeeEEeCCCCHHHH
Q 017114 234 EELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDC 301 (377)
Q Consensus 234 ~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~~-~~~~~---~~~~~~~~~~~~g~~~~~~~~~~l 301 (377)
.+....+.. .|++++-.. .+.-|..+++.+.. .+|+|.. ..... .+.+ +.|-.+++..|.+.+++
T Consensus 39 ~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~---~~ga~~~l~KP~~~~~l 115 (128)
T 1jbe_A 39 VDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAA---QAGASGYVVKPFTAATL 115 (128)
T ss_dssp HHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSCCHHHHHHHH---HTTCSEEEESSCCHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCccHHHHHHHH---HhCcCceeecCCCHHHH
Confidence 444444443 477776433 23345667777653 5677644 33322 2233 45677899999999999
Q ss_pred HHHHHHHhh
Q 017114 302 LSKLEPLLY 310 (377)
Q Consensus 302 ~~~i~~~~~ 310 (377)
.+++..++.
T Consensus 116 ~~~i~~~~~ 124 (128)
T 1jbe_A 116 EEKLNKIFE 124 (128)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987753
No 168
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=54.68 E-value=72 Score=24.66 Aligned_cols=106 Identities=19% Similarity=0.235 Sum_probs=59.0
Q ss_pred ceEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccC-CcccchHHHHHHh---cCCCeEEe-c
Q 017114 202 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-R 273 (377)
Q Consensus 202 ~~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~~-~ 273 (377)
.++.++.+.+. .+.+.......+......-+.++....+. ..|++++-.. .+.-|..+++.+. .++|||.. .
T Consensus 8 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~ 87 (233)
T 1ys7_A 8 PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSA 87 (233)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEc
Confidence 45666655432 23333333322332222222344444443 3577776443 2334556666664 46887754 2
Q ss_pred CC---CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 274 AG---GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 274 ~~---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.. ...+.+ ..|-.+++..|.+++++.+++..++.
T Consensus 88 ~~~~~~~~~~~---~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 88 RSSVDDRVAGL---EAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp CCTTTCCCTTT---TTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---HcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 22 223344 56778899999999999999988764
No 169
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=54.18 E-value=30 Score=29.49 Aligned_cols=93 Identities=10% Similarity=-0.014 Sum_probs=54.6
Q ss_pred CCCeEEEeecccccccHHHHHHHHH-hCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEec
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMD-RLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMP 249 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~-~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~p 249 (377)
.+..+..+|--.- | ...++++. ..++++++-+.+.. .+..++..+..++ +.....++.+++. ..|+++..
T Consensus 22 ~~~rvgiIG~G~~--g-~~~~~~l~~~~~~~~lvav~d~~-~~~~~~~a~~~g~---~~~~~~~~~~ll~~~~~D~V~i~ 94 (357)
T 3ec7_A 22 MTLKAGIVGIGMI--G-SDHLRRLANTVSGVEVVAVCDIV-AGRAQAALDKYAI---EAKDYNDYHDLINDKDVEVVIIT 94 (357)
T ss_dssp CCEEEEEECCSHH--H-HHHHHHHHHTCTTEEEEEEECSS-TTHHHHHHHHHTC---CCEEESSHHHHHHCTTCCEEEEC
T ss_pred CeeeEEEECCcHH--H-HHHHHHHHhhCCCcEEEEEEeCC-HHHHHHHHHHhCC---CCeeeCCHHHHhcCCCCCEEEEc
Confidence 3456777775221 1 24566666 66888877544322 2223333332221 0111246666776 47998887
Q ss_pred cCCcccchHHHHHHhcCCCeEEe
Q 017114 250 SESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 250 s~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
+......-.+.+++..|++|++-
T Consensus 95 tp~~~h~~~~~~al~aGk~Vl~E 117 (357)
T 3ec7_A 95 ASNEAHADVAVAALNANKYVFCE 117 (357)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEEE
T ss_pred CCcHHHHHHHHHHHHCCCCEEee
Confidence 76555566788999999999964
No 170
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=53.86 E-value=47 Score=22.22 Aligned_cols=73 Identities=12% Similarity=0.336 Sum_probs=44.5
Q ss_pred hhHHHHHhc--CCEEEeccC-CcccchHHHHHHh---cCCCeEEe-cCCCC---CccccccCCCCeeEEeCCCCHHHHHH
Q 017114 234 EELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLS 303 (377)
Q Consensus 234 ~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~~-~~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~ 303 (377)
++....+.. .|++++-.. .+.-|..+++.+. ...|+|.. ..... .+.+ +.|-.+++..|.+.+++..
T Consensus 34 ~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~ 110 (121)
T 2pl1_A 34 KEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVL---SAGADDYVTKPFHIEEVMA 110 (121)
T ss_dssp HHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCCHHHHHHHH---HTTCSEEEESSCCHHHHHH
T ss_pred HHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCCCHHHHHHHH---HcCccceEECCCCHHHHHH
Confidence 444444443 577776432 2233556666664 35677654 33322 2233 4577789999999999999
Q ss_pred HHHHHh
Q 017114 304 KLEPLL 309 (377)
Q Consensus 304 ~i~~~~ 309 (377)
++..++
T Consensus 111 ~i~~~~ 116 (121)
T 2pl1_A 111 RMQALM 116 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998765
No 171
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=53.62 E-value=51 Score=22.55 Aligned_cols=107 Identities=19% Similarity=0.265 Sum_probs=58.8
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCCEE-EccccCchhHHHHHh---cCCEEEeccC-CcccchHHHHHHhc-----CCCeE
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMPAV-FTGMLLGEELSQAYA---SGDVFVMPSE-SETLGLVVLEAMSS-----GIPVV 270 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~v~-~~g~~~~~~~~~~~~---~adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI 270 (377)
.++.++.+.+ ..+.++......+.. ....-+..+....+. ..|++++-.. .+.-|..+++.+.. .+|||
T Consensus 6 ~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii 85 (129)
T 3h1g_A 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPII 85 (129)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEE
Confidence 4566666543 233444443332211 111122234433332 3577776433 33446677777653 56877
Q ss_pred Eec-CCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 271 GVR-AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 271 ~~~-~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
... .... .+.+ +.+-.+++..|.+++++.+++..++..
T Consensus 86 ~~s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 86 MITAEGGKAEVITAL---KAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEESCCSHHHHHHHH---HHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEeCCCChHHHHHHH---HcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 543 3322 2233 456778999999999999999988753
No 172
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=53.57 E-value=32 Score=29.07 Aligned_cols=90 Identities=13% Similarity=0.067 Sum_probs=53.8
Q ss_pred eEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccCCc
Q 017114 176 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSESE 253 (377)
Q Consensus 176 ~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~~e 253 (377)
.+..+|--. -| ...++++...++++++-+.+. ..+..++..+..++. ....++.+++. .+|+++..+...
T Consensus 4 rvgiIG~G~--~g-~~~~~~l~~~~~~~l~av~d~-~~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp~~ 75 (344)
T 3ezy_A 4 RIGVIGLGR--IG-TIHAENLKMIDDAILYAISDV-REDRLREMKEKLGVE----KAYKDPHELIEDPNVDAVLVCSSTN 75 (344)
T ss_dssp EEEEECCSH--HH-HHHHHHGGGSTTEEEEEEECS-CHHHHHHHHHHHTCS----EEESSHHHHHHCTTCCEEEECSCGG
T ss_pred EEEEEcCCH--HH-HHHHHHHHhCCCcEEEEEECC-CHHHHHHHHHHhCCC----ceeCCHHHHhcCCCCCEEEEcCCCc
Confidence 456666311 11 236677777788877644432 233334433332220 01256677777 789998877655
Q ss_pred ccchHHHHHHhcCCCeEEec
Q 017114 254 TLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 254 ~~~~~~~Ea~a~G~PvI~~~ 273 (377)
.....+.+++..|++|++-.
T Consensus 76 ~h~~~~~~al~~gk~v~~EK 95 (344)
T 3ezy_A 76 THSELVIACAKAKKHVFCEK 95 (344)
T ss_dssp GHHHHHHHHHHTTCEEEEES
T ss_pred chHHHHHHHHhcCCeEEEEC
Confidence 55566788999999999653
No 173
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=53.33 E-value=57 Score=23.06 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=41.6
Q ss_pred CCEEEeccC-CcccchHHHHHHhc---CCCeEEec-CCC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 243 GDVFVMPSE-SETLGLVVLEAMSS---GIPVVGVR-AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 243 adi~v~ps~-~e~~~~~~~Ea~a~---G~PvI~~~-~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
.|++++-.. .+.-|..+++.+.. .+|||... ... ..+.+ ..+-.+++..|.+.+++.++|..++..
T Consensus 67 ~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~---~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 67 VDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAV---KAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHH---HTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHH---HCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 466665433 23345556655543 56766443 222 22334 557778999999999999999988763
No 174
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=52.95 E-value=37 Score=28.43 Aligned_cols=91 Identities=14% Similarity=0.036 Sum_probs=52.4
Q ss_pred hHHHHHhcCCEEEeccC-CcccchHHHHHHhcCCC-eEEecCCCCCc--cccc-cCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 235 ELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIP-VVGVRAGGIPD--IIPE-DQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 235 ~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~P-vI~~~~~~~~~--~~~~-~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
.-..-++.||++|.-.. .|+|-.++++... +.+ +|.... ++.. .... ....+.-+..+|.+...+++.|.+.+
T Consensus 80 ~d~~~l~~ADlvv~~G~~lE~w~~~~~~~~~-~~~~~v~~s~-~i~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I~~~L 157 (313)
T 1toa_A 80 GDVEWLGNADLILYNGLHLETKMGEVFSKLR-GSRLVVAVSE-TIPVSQRLSLEEAEFDPHVWFDVKLWSYSVKAVYESL 157 (313)
T ss_dssp HHHHHHHHCSEEEECCTTCSTTCHHHHHHHT-TSSEEEEGGG-GSCGGGSCBSTTSCBCCCGGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEcCCCcHHHHHHHHHhcc-CCCeEEEeec-CcccccccccCCCCCCCceeCCHHHHHHHHHHHHHHH
Confidence 34466799999997654 6888889999876 445 443322 1211 1100 00112234455556666777776666
Q ss_pred h--CHHHHHHHHHHHHHHHH
Q 017114 310 Y--NQELRETMGQAARQEME 327 (377)
Q Consensus 310 ~--~~~~~~~~~~~~~~~~~ 327 (377)
. ||+......+|+.++.+
T Consensus 158 ~~~DP~~a~~Y~~N~~~~~~ 177 (313)
T 1toa_A 158 CKLLPGKTREFTQRYQAYQQ 177 (313)
T ss_dssp HHHCGGGHHHHHHHHHHHHH
T ss_pred HHHChhhHHHHHHHHHHHHH
Confidence 5 77766666666665543
No 175
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=52.81 E-value=19 Score=23.73 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=10.6
Q ss_pred chHHHHHHhcCCCeEE
Q 017114 256 GLVVLEAMSSGIPVVG 271 (377)
Q Consensus 256 ~~~~~Ea~a~G~PvI~ 271 (377)
|.++-.|...|+|||.
T Consensus 55 gsK~~kA~~lgI~Ii~ 70 (92)
T 1l7b_A 55 GSKLEKARALGVPTLT 70 (92)
T ss_dssp STTHHHHHCSSSCCEE
T ss_pred ChHHHHHHHcCCcEEe
Confidence 5666667777777663
No 176
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=52.41 E-value=59 Score=22.96 Aligned_cols=105 Identities=13% Similarity=0.106 Sum_probs=58.0
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCC--EEEccccCchhHHHHHh---------cCCEEEeccCC-cccchHHHHHHh----
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMP--AVFTGMLLGEELSQAYA---------SGDVFVMPSES-ETLGLVVLEAMS---- 264 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~--v~~~g~~~~~~~~~~~~---------~adi~v~ps~~-e~~~~~~~Ea~a---- 264 (377)
.++.|+.+.+ ..+.++......+ ..+...-+.++....+. ..|++++-... +.-|..+++.+.
T Consensus 9 ~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~~ 88 (149)
T 1i3c_A 9 KVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNPD 88 (149)
T ss_dssp EEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCcC
Confidence 4566666543 2334444444322 12222222245555554 36888764432 233556666664
Q ss_pred -cCCCeEEe-cCCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 265 -SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 265 -~G~PvI~~-~~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
.++|+|.. ..... .+.+ +.+-.+++..|.+.+++.+++..++
T Consensus 89 ~~~~piiils~~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~~ 135 (149)
T 1i3c_A 89 LKRIPVVVLTTSHNEDDVIASY---ELHVNCYLTKSRNLKDLFKMVQGIE 135 (149)
T ss_dssp TTTSCEEEEESCCCHHHHHHHH---HTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCChHHHHHHH---HcCCcEEEECCCCHHHHHHHHHHHH
Confidence 25677654 33322 2233 5577889999999999999988764
No 177
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=52.29 E-value=36 Score=24.25 Aligned_cols=107 Identities=11% Similarity=0.162 Sum_probs=56.6
Q ss_pred ceEEEEecCcc-HHHHHHhhcCC-CE-EEccccCchhHHHHHhc---CCEEEeccCC-cccchHHHHHHh---cCCCeEE
Q 017114 202 ARIAFIGDGPY-REELEKMFTGM-PA-VFTGMLLGEELSQAYAS---GDVFVMPSES-ETLGLVVLEAMS---SGIPVVG 271 (377)
Q Consensus 202 ~~l~i~G~g~~-~~~l~~~~~~~-~v-~~~g~~~~~~~~~~~~~---adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~ 271 (377)
.+++++.+.+. ...+....... +. .....-+.++....+.. .|++++-... +.-|..+++.+. .++|+|.
T Consensus 4 ~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 83 (154)
T 2qsj_A 4 TVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVAL 83 (154)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEE
Confidence 45666665432 33344443322 22 22222223566666654 5777764432 223555555554 3678775
Q ss_pred ec-CCC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 272 VR-AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 272 ~~-~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
.. ... ..+.+ ..+..+++..|.+.+++.++|..++..
T Consensus 84 ls~~~~~~~~~~~~---~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 84 ISGETDHELIRAAL---EAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp C-----CHHHHHHH---HTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred EeCCCCHHHHHHHH---HccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 43 222 12233 456678889999999999999988763
No 178
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=52.28 E-value=56 Score=22.69 Aligned_cols=107 Identities=15% Similarity=0.074 Sum_probs=57.4
Q ss_pred ceEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCC-cccchHHHHHHh--------cCCCe
Q 017114 202 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS--------SGIPV 269 (377)
Q Consensus 202 ~~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a--------~G~Pv 269 (377)
.+++++.+.+. ...+.......+..+...-+.++....+.. .|++++-... +.-|..+++.+. ...|+
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 90 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASI 90 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEE
Confidence 45666665442 334444444332222112222454444443 5787764432 223555666654 34666
Q ss_pred EEec-CCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 270 VGVR-AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 270 I~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
|... ........ ..+-.+++..|.+.+++.+++..++..
T Consensus 91 i~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 91 IAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp EEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 6543 22222222 335568999999999999999888653
No 179
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=51.82 E-value=11 Score=30.86 Aligned_cols=42 Identities=19% Similarity=0.048 Sum_probs=29.4
Q ss_pred hhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCC
Q 017114 234 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 275 (377)
+++.+++..+|+++-.+..+..-..+..++..|+|+|+...+
T Consensus 64 ~dl~~~l~~~DvVIDft~p~~~~~~~~~a~~~G~~vVigTtG 105 (273)
T 1dih_A 64 SSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTG 105 (273)
T ss_dssp SCSTTTTTSCSEEEECSCHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred CCHHHHhcCCCEEEEcCChHHHHHHHHHHHhCCCCEEEECCC
Confidence 445566678999995554444445577889999999985544
No 180
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=51.56 E-value=18 Score=30.26 Aligned_cols=88 Identities=16% Similarity=-0.004 Sum_probs=49.7
Q ss_pred CeEEEeecccccccHHHHHHHHHhCCCceEE-EEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCC
Q 017114 175 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIA-FIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES 252 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~-i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~ 252 (377)
..++.+|.- .-|...+++++...++++++ ++...+. .+.+.+. .++. .. .+...+-..+|+++..+..
T Consensus 6 ~~vgiiG~G--~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~---~g~~---~~--~~~~~l~~~~D~V~i~tp~ 75 (319)
T 1tlt_A 6 LRIGVVGLG--GIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES---WRIP---YA--DSLSSLAASCDAVFVHSST 75 (319)
T ss_dssp EEEEEECCS--THHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH---HTCC---BC--SSHHHHHTTCSEEEECSCT
T ss_pred ceEEEECCC--HHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH---cCCC---cc--CcHHHhhcCCCEEEEeCCc
Confidence 457777641 11222356777777888877 4433222 2222222 1222 12 2222334678999887765
Q ss_pred cccchHHHHHHhcCCCeEEe
Q 017114 253 ETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 253 e~~~~~~~Ea~a~G~PvI~~ 272 (377)
....-.+.+++..|++|++-
T Consensus 76 ~~h~~~~~~al~~G~~v~~e 95 (319)
T 1tlt_A 76 ASHFDVVSTLLNAGVHVCVD 95 (319)
T ss_dssp THHHHHHHHHHHTTCEEEEE
T ss_pred hhHHHHHHHHHHcCCeEEEe
Confidence 55556677899999999975
No 181
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=51.34 E-value=42 Score=27.76 Aligned_cols=94 Identities=14% Similarity=0.021 Sum_probs=52.8
Q ss_pred CchhHHHHHhcCCEEEeccC-Ccc----cchHHHHHHhcC--CCeEEecCCCCCccccc----cCCCCeeEEeCCCCHHH
Q 017114 232 LGEELSQAYASGDVFVMPSE-SET----LGLVVLEAMSSG--IPVVGVRAGGIPDIIPE----DQDGKIGYLFNPGDLDD 300 (377)
Q Consensus 232 ~~~~~~~~~~~adi~v~ps~-~e~----~~~~~~Ea~a~G--~PvI~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~ 300 (377)
+...-..-++.||++|.-.. .|+ |-.++++..... .++|.... ++..+-.. ....+.-+..++.+...
T Consensus 56 ptp~d~~~l~~Adlvv~~G~~lE~~~~~w~~k~~~~~~~~~~~~~v~~s~-gi~~~~~~~~~~~~~~dPHvWldp~~~~~ 134 (294)
T 3hh8_A 56 PLPEDAEKTSNADVIFYNGINLEDGGQAWFTKLVKNAQKTKNKDYFAVSD-GIDVIYLEGASEKGKEDPHAWLNLENGII 134 (294)
T ss_dssp CCHHHHHHHHHCSEEEECCTTSSCSTTSHHHHHHHHTTCCBTTTEEETTT-TSCCCBSTTCCSTTCBCCCGGGSHHHHHH
T ss_pred CCHHHHHHHHhCCEEEEcCCCccchHHHHHHHHHHhccccCCceEEEccC-CcccccCCCccCCCCCCCceeCCHHHHHH
Confidence 33444567889999987653 576 777888877654 56665432 22111000 00112234555556666
Q ss_pred HHHHHHHHhh--CHHHHHHHHHHHHHHH
Q 017114 301 CLSKLEPLLY--NQELRETMGQAARQEM 326 (377)
Q Consensus 301 l~~~i~~~~~--~~~~~~~~~~~~~~~~ 326 (377)
+++.|.+.+. ||+......+|+.++.
T Consensus 135 ~a~~I~~~L~~~dP~~a~~y~~N~~~~~ 162 (294)
T 3hh8_A 135 YSKNIAKQLIAKDPKNKETYEKNLKAYV 162 (294)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 6666666654 6766666666665544
No 182
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=51.25 E-value=53 Score=22.09 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=56.9
Q ss_pred eEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHh--cCCCeEEe-cCC
Q 017114 203 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS--SGIPVVGV-RAG 275 (377)
Q Consensus 203 ~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a--~G~PvI~~-~~~ 275 (377)
++.++.+.+ ..+.+.......+......-+.++....+.. .|++++-.. .+.-|..+++.+. .+.|+|.. ...
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 455555443 2233333333333222223333455555443 577776433 2333555665553 35777643 322
Q ss_pred CC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 276 GI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 276 ~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.. .+.+ ..|..+++..|.+.+++..++..++.
T Consensus 84 ~~~~~~~~~---~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 84 SEIDKVIGL---EIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp CHHHHHHHH---HTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred ChHHHHHHH---hCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 22 2233 55778899999999999999987764
No 183
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=51.05 E-value=22 Score=29.25 Aligned_cols=93 Identities=8% Similarity=0.042 Sum_probs=50.0
Q ss_pred hHHHHHhcCCEEEeccC-CcccchHHHHHHhcCCCeEEecCCCCCccccc------------------cCC--CCeeEEe
Q 017114 235 ELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE------------------DQD--GKIGYLF 293 (377)
Q Consensus 235 ~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~------------------~~~--~~~g~~~ 293 (377)
.-..-++.||++|.-.. .|+|-.++++++.....++.....++.-+-.. ..+ .+.-+..
T Consensus 41 ~d~~~l~~Adlvv~~G~~~E~w~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~dPH~Wl 120 (284)
T 2prs_A 41 SDVKRLQNADLVVWVGPEMEAFMQKPVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLWL 120 (284)
T ss_dssp THHHHHHHCSEEEECCTTTCGGGHHHHHTSCGGGEEEGGGCTTTGGGCCC---------------------CCCCCCGGG
T ss_pred HHHHHHHcCCEEEEcCCCcHHHHHHHHHhcCCCCcEEEecCCCcccccccccccccccccccccccccCCCCCCCCcccC
Confidence 44467889999987653 68888888887654333333322232111000 000 1122344
Q ss_pred CCCCHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHH
Q 017114 294 NPGDLDDCLSKLEPLLY--NQELRETMGQAARQEME 327 (377)
Q Consensus 294 ~~~~~~~l~~~i~~~~~--~~~~~~~~~~~~~~~~~ 327 (377)
+|.+...+++.|.+.+. ||+......+|+.++.+
T Consensus 121 dp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~ 156 (284)
T 2prs_A 121 SPEIARATAVAIHGKLVELMPQSRAKLDANLKDFEA 156 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 44455566666666554 77766666666665543
No 184
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=50.30 E-value=45 Score=28.27 Aligned_cols=90 Identities=17% Similarity=0.159 Sum_probs=54.7
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEecc
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPS 250 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps 250 (377)
.+..+..+|--. -|....+.++...++++++-+.+.. .+..++ .. .+.....++.+++.. .|+++..+
T Consensus 6 ~~~rvgiiG~G~--~g~~~~~~~~~~~~~~~l~av~d~~-~~~~~~---~~----~~~~~~~~~~~ll~~~~vD~V~i~t 75 (352)
T 3kux_A 6 DKIKVGLLGYGY--ASKTFHAPLIMGTPGLELAGVSSSD-ASKVHA---DW----PAIPVVSDPQMLFNDPSIDLIVIPT 75 (352)
T ss_dssp CCEEEEEECCSH--HHHHTHHHHHHTSTTEEEEEEECSC-HHHHHT---TC----SSCCEESCHHHHHHCSSCCEEEECS
T ss_pred CCceEEEECCCH--HHHHHHHHHHhhCCCcEEEEEECCC-HHHHHh---hC----CCCceECCHHHHhcCCCCCEEEEeC
Confidence 345677777421 1222356777788888877554432 233331 11 111122567777776 78888877
Q ss_pred CCcccchHHHHHHhcCCCeEEe
Q 017114 251 ESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
......-.+.+|+..|++|++-
T Consensus 76 p~~~H~~~~~~al~aGkhV~~E 97 (352)
T 3kux_A 76 PNDTHFPLAQSALAAGKHVVVD 97 (352)
T ss_dssp CTTTHHHHHHHHHHTTCEEEEC
T ss_pred ChHHHHHHHHHHHHCCCcEEEE
Confidence 6555566788999999999964
No 185
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=49.96 E-value=51 Score=27.38 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=53.0
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEecc
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPS 250 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps 250 (377)
.+..+.++|.-.-. ..+++++...++++++.+.+. ..+..++.... +.. ..++.++++ .+|+++..+
T Consensus 9 ~~~~igiIG~G~~g---~~~~~~l~~~~~~~~v~v~d~-~~~~~~~~~~~--~~~-----~~~~~~~l~~~~~D~V~i~t 77 (315)
T 3c1a_A 9 SPVRLALIGAGRWG---KNYIRTIAGLPGAALVRLASS-NPDNLALVPPG--CVI-----ESDWRSVVSAPEVEAVIIAT 77 (315)
T ss_dssp CCEEEEEEECTTTT---TTHHHHHHHCTTEEEEEEEES-CHHHHTTCCTT--CEE-----ESSTHHHHTCTTCCEEEEES
T ss_pred CcceEEEECCcHHH---HHHHHHHHhCCCcEEEEEEeC-CHHHHHHHHhh--Ccc-----cCCHHHHhhCCCCCEEEEeC
Confidence 34567777742211 235566667777777644332 23333333332 221 245566675 789998877
Q ss_pred CCcccchHHHHHHhcCCCeEEe
Q 017114 251 ESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
......-.+.+++..|++|++-
T Consensus 78 p~~~h~~~~~~al~~Gk~v~~e 99 (315)
T 3c1a_A 78 PPATHAEITLAAIASGKAVLVE 99 (315)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHHHHHHHHHHCCCcEEEc
Confidence 6555566677899999999865
No 186
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=49.61 E-value=60 Score=22.21 Aligned_cols=107 Identities=13% Similarity=0.178 Sum_probs=60.8
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCCEEEccc-cCchhHHHHHh--cCCEEEeccC-CcccchHHHHHHh---cCCCeEEe-
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMPAVFTGM-LLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV- 272 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~-~~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~~- 272 (377)
.++.++.+.+ ..+.+.....+.+....+. -+.++....+. ..|++++-.. .+.-|..+++.+. ...|+|..
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 81 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 81 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEe
Confidence 3556666543 3344555554444444422 22245544443 3677776543 2334556666554 35666643
Q ss_pred cCCC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 273 RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 273 ~~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
.... ..+.+ +.|-.+++..|.+.+++.+++..++..
T Consensus 82 ~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 82 AKNDHFYGKHCA---DAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp CC---CTHHHHH---HTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHH---HhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 3222 22333 557788999999999999999988763
No 187
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=49.54 E-value=1.1e+02 Score=25.07 Aligned_cols=107 Identities=12% Similarity=0.124 Sum_probs=62.8
Q ss_pred CCceEEEEecCc-cHHHHHHhhcCCCEEEcc-ccCchhHHHHHhc--CCEEEeccC----Ccccc-hHHHHHHhcCCCeE
Q 017114 200 PEARIAFIGDGP-YREELEKMFTGMPAVFTG-MLLGEELSQAYAS--GDVFVMPSE----SETLG-LVVLEAMSSGIPVV 270 (377)
Q Consensus 200 ~~~~l~i~G~g~-~~~~l~~~~~~~~v~~~g-~~~~~~~~~~~~~--adi~v~ps~----~e~~~-~~~~Ea~a~G~PvI 270 (377)
...++.++-+.+ ....+.......+....+ .-+.++..+.+.. .|++++--. .+|+- ...+-... .+|||
T Consensus 159 l~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~~dlvl~D~~MPd~mdG~e~~~~ir~~~-~~piI 237 (286)
T 3n0r_A 159 LATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRTPGLVLADIQLADGSSGIDAVKDILGRM-DVPVI 237 (286)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEEEESCCTTSCCTTTTTHHHHHHT-TCCEE
T ss_pred CCCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHhcC-CCCEE
Confidence 345677777654 334555555555555553 3333566566654 577776322 12221 12233333 89998
Q ss_pred EecC-C-CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 271 GVRA-G-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 271 ~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.-.. + .....+ ..|-.+++..|.++++|..+|..++.
T Consensus 238 ~lT~~~~~~~~~~---~~G~~~~l~KP~~~~~L~~~i~~~l~ 276 (286)
T 3n0r_A 238 FITAFPERLLTGE---RPEPTFLITKPFQPETVKAAIGQALF 276 (286)
T ss_dssp EEESCGGGGCCSS---SCCCSSEEESSCCHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHH---hCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 5432 2 122233 55677899999999999999998875
No 188
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=49.17 E-value=51 Score=27.94 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=47.2
Q ss_pred HHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCCcccchHHHHHHhcCCC
Q 017114 191 FLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMSSGIP 268 (377)
Q Consensus 191 ~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~e~~~~~~~Ea~a~G~P 268 (377)
..+.++...++++++-+.+....+.+.+.....++... .++.++++. .|+++..+......-.+.+|+..|++
T Consensus 17 ~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~-----~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al~aGk~ 91 (349)
T 3i23_A 17 YHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFT-----ADLNELLTDPEIELITICTPAHTHYDLAKQAILAGKS 91 (349)
T ss_dssp TTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEE-----SCTHHHHSCTTCCEEEECSCGGGHHHHHHHHHHTTCE
T ss_pred HHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEE-----CCHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHcCCE
Confidence 45666667788888755543333333332221233322 355556665 79888877655555667899999999
Q ss_pred eEE
Q 017114 269 VVG 271 (377)
Q Consensus 269 vI~ 271 (377)
|++
T Consensus 92 Vl~ 94 (349)
T 3i23_A 92 VIV 94 (349)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
No 189
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=49.15 E-value=83 Score=23.75 Aligned_cols=107 Identities=18% Similarity=0.249 Sum_probs=59.9
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHh---cCCCeEEe-c
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-R 273 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~~-~ 273 (377)
.++.++.+.+ ..+.+.......+......-+.++....+.. .|++++-.. .+.-|..+++.+. .++|||.. .
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~ 84 (208)
T 1yio_A 5 PTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITA 84 (208)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 3555665443 2334444444433333322233444444433 467665433 2334566666654 46787754 3
Q ss_pred CCC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 274 AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 274 ~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
... ..+.+ ..|-.+++..|.+++++.+++..++..
T Consensus 85 ~~~~~~~~~a~---~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 85 HGDIPMTVRAM---KAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp CTTSCCCHHHH---HTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---HCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 322 23333 567788999999999999999988764
No 190
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=49.13 E-value=37 Score=28.33 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=53.8
Q ss_pred ccCchhHHHHHhcCCEEEecc-CCcccchHHHHHHhcCCCeEEecCCCCCccccc----cCCCCeeEEeCCCCHHHHHHH
Q 017114 230 MLLGEELSQAYASGDVFVMPS-ESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE----DQDGKIGYLFNPGDLDDCLSK 304 (377)
Q Consensus 230 ~~~~~~~~~~~~~adi~v~ps-~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~l~~~ 304 (377)
+-+...-..-++.||++|.-. ..|+|-.++++... +.++|....+ +..+-.. ....+.-+..+|.+...+++.
T Consensus 68 yeptp~d~~~l~~ADlvv~nG~~lE~wl~k~~~~~~-~~~~v~~s~g-i~~~~~~~~~~~~~~DPHvWldp~n~~~~a~~ 145 (307)
T 3ujp_A 68 YEPTPSDIVKAQDADLILYNGMNLERWFEQFLGNVK-DVPSVVLTEG-IEPIPIADGPYTDKPNPHAWMSPRNALVYVEN 145 (307)
T ss_dssp CCCCHHHHHHHHHCSEEEECCTTSSTTHHHHHHTSC-SCCEEETTTT-CCCCBCCSSSSTTSBCCCCTTCHHHHHHHHHH
T ss_pred cCCCHHHHHHHhcCCEEEEcCCChHHHHHHHHHhCC-CCCEEEeeCC-ccccccccccCCCCCCCCcCCCHHHHHHHHHH
Confidence 333344456788999998765 36888778887653 4566543222 2111100 001122345555566667777
Q ss_pred HHHHhh--CHHHHHHHHHHHHHHHH
Q 017114 305 LEPLLY--NQELRETMGQAARQEME 327 (377)
Q Consensus 305 i~~~~~--~~~~~~~~~~~~~~~~~ 327 (377)
|.+.+. ||+......+|+.++.+
T Consensus 146 I~~~L~~~DP~~a~~Y~~Na~~~~~ 170 (307)
T 3ujp_A 146 IRQAFVELDPDNAKYYNANAAVYSE 170 (307)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHH
Confidence 766664 77766666666665543
No 191
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=49.08 E-value=75 Score=25.17 Aligned_cols=65 Identities=18% Similarity=0.322 Sum_probs=40.8
Q ss_pred CCEEEeccC-CcccchHHHHHHhc--CCCeEEecC-CCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 243 GDVFVMPSE-SETLGLVVLEAMSS--GIPVVGVRA-GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 243 adi~v~ps~-~e~~~~~~~Ea~a~--G~PvI~~~~-~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.|++++-.. .+.-|..+++.+.. .+|||.-.. ... .+.+ ..|-.+++..|.+++++.++|..++.
T Consensus 82 ~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~~~~~~~~a~---~~Ga~~yl~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 82 PDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARDTVEEKVRLL---GLGADDYLIKPFHPDELLARVKVQLR 153 (249)
T ss_dssp CSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHH---HHTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCCCHHHHHHHH---HCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 577776433 22335556655543 467765432 221 2233 44667899999999999999998765
No 192
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=48.95 E-value=44 Score=26.15 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=29.0
Q ss_pred hhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCC
Q 017114 234 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 276 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~ 276 (377)
+++.++++..|++++........-..-.+..+|+..|..-.+.
T Consensus 137 ~dl~eli~~~D~ViIAvPs~~~~ei~~~l~~aGi~~Ilnf~P~ 179 (215)
T 2vt3_A 137 DDLEQHVKDESVAILTVPAVAAQSITDRLVALGIKGILNFTPA 179 (215)
T ss_dssp GGHHHHCSSCCEEEECSCHHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred hhHHHHHHhCCEEEEecCchhHHHHHHHHHHcCCCEEEEcCce
Confidence 5778888766988876543333345666788999977655443
No 193
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.84 E-value=61 Score=22.25 Aligned_cols=11 Identities=27% Similarity=0.286 Sum_probs=7.1
Q ss_pred CCeEEEeeccc
Q 017114 174 KPLIVHVGRLG 184 (377)
Q Consensus 174 ~~~i~~~G~~~ 184 (377)
...|++.|.+.
T Consensus 25 G~~~v~TG~l~ 35 (112)
T 2ebu_A 25 GLIFVITGVLE 35 (112)
T ss_dssp TCEEEECSCCS
T ss_pred CCEEEEeeeCC
Confidence 45677777764
No 194
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=48.52 E-value=36 Score=28.57 Aligned_cols=91 Identities=13% Similarity=0.006 Sum_probs=53.0
Q ss_pred CeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccCC
Q 017114 175 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES 252 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~~ 252 (377)
..+..+|.-.- -..+++++...++++++-+.+.. .+..++.+...++. ....++.+++. ..|+++..+..
T Consensus 6 ~rigiiG~G~i---g~~~~~~l~~~~~~~~~av~d~~-~~~~~~~a~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp~ 77 (329)
T 3evn_A 6 VRYGVVSTAKV---APRFIEGVRLAGNGEVVAVSSRT-LESAQAFANKYHLP----KAYDKLEDMLADESIDVIYVATIN 77 (329)
T ss_dssp EEEEEEBCCTT---HHHHHHHHHHHCSEEEEEEECSC-SSTTCC---CCCCS----CEESCHHHHHTCTTCCEEEECSCG
T ss_pred eEEEEEechHH---HHHHHHHHHhCCCcEEEEEEcCC-HHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEECCCc
Confidence 45666664211 23466777777887776554321 11222222232221 11256777777 68998887765
Q ss_pred cccchHHHHHHhcCCCeEEec
Q 017114 253 ETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 253 e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
....-.+.+|+..|++|++-.
T Consensus 78 ~~h~~~~~~al~aGk~Vl~EK 98 (329)
T 3evn_A 78 QDHYKVAKAALLAGKHVLVEK 98 (329)
T ss_dssp GGHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHCCCeEEEcc
Confidence 555566789999999999753
No 195
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=48.27 E-value=59 Score=21.76 Aligned_cols=104 Identities=19% Similarity=0.280 Sum_probs=55.4
Q ss_pred eEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCC-cccchHHHHHHh--cCCCeEEe-cCC
Q 017114 203 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS--SGIPVVGV-RAG 275 (377)
Q Consensus 203 ~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a--~G~PvI~~-~~~ 275 (377)
++.++.+.+ ..+.+.......+......-+.++....+.. .|++++-... +.-|..+++.+. ...|+|.. ...
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 455555443 2233444333222222222233455555443 5777764432 233556666664 35676643 333
Q ss_pred CC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 276 GI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 276 ~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
.. .+.+ +.|-.+++..|.+.+++.+++..++
T Consensus 84 ~~~~~~~~~---~~ga~~~l~Kp~~~~~l~~~i~~~~ 117 (122)
T 1zgz_A 84 DRIDRIVGL---EMGADDYVTKPLELRELVVRVKNLL 117 (122)
T ss_dssp CHHHHHHHH---HHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ChhhHHHHH---HhCHHHHccCCCCHHHHHHHHHHHH
Confidence 22 2223 4466789999999999999997765
No 196
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=47.57 E-value=58 Score=21.51 Aligned_cols=104 Identities=21% Similarity=0.236 Sum_probs=54.3
Q ss_pred eEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCC-cccchHHHHHHh---cCCCeEEe-cC
Q 017114 203 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-RA 274 (377)
Q Consensus 203 ~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~~-~~ 274 (377)
++.++.+.+. .+.+.......+......-+.++....+.. .|++++-... +.-|..+++.+. ...|+|.. ..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 3455554432 233333333333332222222444444443 5777764332 233555666553 35677643 22
Q ss_pred CCC-CccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 275 GGI-PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 275 ~~~-~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
... .+.. ..+..+++..|.+.+++.+++..++
T Consensus 83 ~~~~~~~~---~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 83 SHYRSDMS---SWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp GGGGGCGG---GGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred cchHHHHH---hccccceEECCCCHHHHHHHHHHHh
Confidence 211 2333 4466789999999999999987764
No 197
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=47.43 E-value=91 Score=25.99 Aligned_cols=74 Identities=11% Similarity=-0.020 Sum_probs=45.2
Q ss_pred HHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccCCcccchHHHHHHhcCCCeE
Q 017114 193 KRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSESETLGLVVLEAMSSGIPVV 270 (377)
Q Consensus 193 ~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 270 (377)
++++.. ++++++-+.+. ..+..++..+..++. ....++.+++. .+|+++..+........+.+++..|++|+
T Consensus 17 ~~~l~~-~~~~~vav~d~-~~~~~~~~~~~~g~~----~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~v~ 90 (332)
T 2glx_A 17 IGAIRA-TGGEVVSMMST-SAERGAAYATENGIG----KSVTSVEELVGDPDVDAVYVSTTNELHREQTLAAIRAGKHVL 90 (332)
T ss_dssp HHHHHH-TTCEEEEEECS-CHHHHHHHHHHTTCS----CCBSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred hHHhhc-CCCeEEEEECC-CHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEeCChhHhHHHHHHHHHCCCeEE
Confidence 556666 77777644432 233344444332321 01245666776 48999887765555566778999999998
Q ss_pred Ee
Q 017114 271 GV 272 (377)
Q Consensus 271 ~~ 272 (377)
+-
T Consensus 91 ~e 92 (332)
T 2glx_A 91 CE 92 (332)
T ss_dssp EC
T ss_pred Ee
Confidence 74
No 198
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=47.35 E-value=69 Score=22.25 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=56.3
Q ss_pred ceEEEEecCcc-HHHHHHhhcCC-CEEEccc-cCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHhc---CCCeE-E
Q 017114 202 ARIAFIGDGPY-REELEKMFTGM-PAVFTGM-LLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS---GIPVV-G 271 (377)
Q Consensus 202 ~~l~i~G~g~~-~~~l~~~~~~~-~v~~~g~-~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~---G~PvI-~ 271 (377)
.+++|+.+.+. .+.+....... ++...+. -+.++....+.. .|++++-.. .+.-|..+++.+.. ..||| .
T Consensus 10 ~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~ 89 (143)
T 2qv0_A 10 MKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFI 89 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEEE
Confidence 45666665432 23333333321 3332221 122444444433 577776543 23345667776654 34454 3
Q ss_pred ecCC-CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 272 VRAG-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 272 ~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
+... ...+.+ ..+..+++..|.+.+++.+++..++.
T Consensus 90 s~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 90 TAWKEHAVEAF---ELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp ESCCTTHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred eCCHHHHHHHH---hCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 3332 222333 45777899999999999999988765
No 199
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=47.32 E-value=38 Score=28.93 Aligned_cols=88 Identities=13% Similarity=-0.071 Sum_probs=52.5
Q ss_pred CCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCC-CEEEccccCchhHHHHHhc--CCEEEecc
Q 017114 174 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM-PAVFTGMLLGEELSQAYAS--GDVFVMPS 250 (377)
Q Consensus 174 ~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~-~v~~~g~~~~~~~~~~~~~--adi~v~ps 250 (377)
+..+..+|--. -|....+.++...++++++-+.+.... . ..... .+.. ..++.++++. .|+++..+
T Consensus 5 ~~rvgiiG~G~--~g~~~~~~~l~~~~~~~l~av~d~~~~-~---~~~~~~~~~~-----~~~~~~ll~~~~vD~V~i~t 73 (362)
T 3fhl_A 5 IIKTGLAAFGM--SGQVFHAPFISTNPHFELYKIVERSKE-L---SKERYPQASI-----VRSFKELTEDPEIDLIVVNT 73 (362)
T ss_dssp CEEEEESCCSH--HHHHTTHHHHHHCTTEEEEEEECSSCC-G---GGTTCTTSEE-----ESCSHHHHTCTTCCEEEECS
T ss_pred ceEEEEECCCH--HHHHHHHHHHhhCCCeEEEEEEcCCHH-H---HHHhCCCCce-----ECCHHHHhcCCCCCEEEEeC
Confidence 34577776421 122235666777888888755543211 1 22222 2222 2456666766 79988877
Q ss_pred CCcccchHHHHHHhcCCCeEEe
Q 017114 251 ESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
......-.+.+|+..|++|++-
T Consensus 74 p~~~H~~~~~~al~aGkhVl~E 95 (362)
T 3fhl_A 74 PDNTHYEYAGMALEAGKNVVVE 95 (362)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHHHHHHHHHHCCCeEEEe
Confidence 6555556688999999999974
No 200
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=45.71 E-value=24 Score=29.04 Aligned_cols=96 Identities=10% Similarity=0.002 Sum_probs=49.1
Q ss_pred ccCchhHHHHHhcCCEEEeccC-CcccchHHHHHHhcC-CCeEEecCCCCCcccc--ccC------------CCCeeEEe
Q 017114 230 MLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSG-IPVVGVRAGGIPDIIP--EDQ------------DGKIGYLF 293 (377)
Q Consensus 230 ~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G-~PvI~~~~~~~~~~~~--~~~------------~~~~g~~~ 293 (377)
+-+...-..-++.||++|.-.. .|+|-.++++++... +.+|.. ..++. +.. ... ..+.-+..
T Consensus 48 yeptp~d~~~l~~Adlvv~~G~~lE~w~~k~~~~~~~~~~~~v~~-~~~i~-l~~~~~~~~~~~~~~~~h~~~~dPHvWl 125 (286)
T 3gi1_A 48 FEPSVNDVAAIYDADLFVYHSHTLEAWARDLDPNLKKSKVDVFEA-SKPLT-LDRVKGLEDMEVTQGIDPATLYDPHTWT 125 (286)
T ss_dssp CCCCHHHHHHHHTSSEEEESCTTTSGGGTTCCTTTTTCCCEEEET-TTTSC-CCBCC---------------CBCCCGGG
T ss_pred ccCCHHHHHHHHhCCEEEEcCCCchHHHHHHHHhccCCCcEEEEC-CCCcc-ccccCCcccccccccccCCCCCCCceec
Confidence 3333444567888999887643 677766666665432 334422 22222 110 000 00222334
Q ss_pred CCCCHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHH
Q 017114 294 NPGDLDDCLSKLEPLLY--NQELRETMGQAARQEME 327 (377)
Q Consensus 294 ~~~~~~~l~~~i~~~~~--~~~~~~~~~~~~~~~~~ 327 (377)
+|.+...+++.|.+.+. ||+......+|+.++.+
T Consensus 126 dp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~ 161 (286)
T 3gi1_A 126 DPVLAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKK 161 (286)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 44455566666666554 77666666666655543
No 201
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=45.55 E-value=65 Score=21.45 Aligned_cols=104 Identities=17% Similarity=0.300 Sum_probs=55.2
Q ss_pred eEEEEecCcc-HHHHHHhhcCCCEEEcc-ccCchhHHHHHh--cCCEEEeccCC-cccchHHHHHHh---cCCCeEEe-c
Q 017114 203 RIAFIGDGPY-REELEKMFTGMPAVFTG-MLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-R 273 (377)
Q Consensus 203 ~l~i~G~g~~-~~~l~~~~~~~~v~~~g-~~~~~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~~-~ 273 (377)
++.++.+.+. ...+.......+..... .-+.++....+. ..|++++-... +.-|..+++.+. .+.|+|.. .
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (120)
T 1tmy_A 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSA 83 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEEC
T ss_pred eEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeC
Confidence 4555654432 23334443333333222 112234444443 36777764432 223555666553 46777654 3
Q ss_pred CCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 274 AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 274 ~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
.... .+.. +.|-.+++..|.+.+++.+++..++
T Consensus 84 ~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 84 MGQQAMVIEAI---KAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp TTCHHHHHHHH---HTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHH---HhCcceeEeCCCCHHHHHHHHHHHh
Confidence 3322 2233 4567789999999999999987764
No 202
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=45.12 E-value=60 Score=21.79 Aligned_cols=65 Identities=9% Similarity=0.085 Sum_probs=33.0
Q ss_pred CCceEEEEecC-ccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 200 PEARIAFIGDG-PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 200 ~~~~l~i~G~g-~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
.++.+.+.|.- ..+..+++++...+-.+...++ ..++-+|........+.++..|...|+|||..
T Consensus 17 ~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~s--------~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~ 82 (107)
T 3l3e_A 17 HKVVVCVSKKLSKKQSELNGIAASLGADYRRSFD--------ETVTHFIYQGRPNDTNREYKSVKERGVHIVSE 82 (107)
T ss_dssp TTCEEEECGGGGGGHHHHHHHHHHTTCEEESSCC--------TTCCEEECCCCTTCCCHHHHHHHHTTCEEECH
T ss_pred CCeEEEEeCCChHhHHHHHHHHHHcCCEEecccc--------CCceEEEecCCCCCCCHHHHHHHHCCCeEecH
Confidence 34555555521 2344555555544433333332 23444554222223356777888888888853
No 203
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=45.09 E-value=55 Score=25.34 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=29.0
Q ss_pred chhHHHHHhcCCEEEeccCCc-----------ccchHHHHHHhcCCCeEEec
Q 017114 233 GEELSQAYASGDVFVMPSESE-----------TLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 233 ~~~~~~~~~~adi~v~ps~~e-----------~~~~~~~Ea~a~G~PvI~~~ 273 (377)
.++..+.+.+||.+++|- .+ ++-..+-|+...|+|++.+.
T Consensus 70 ~~~~~~~l~~ad~I~l~G-G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 70 LGEITTKLRKNDFIYVTG-GNTFFLLQELKRTGADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp HHHHHHHHHHSSEEEECC-SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEET
T ss_pred hHHHHHHHHhCCEEEECC-CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEEC
Confidence 356677888899988876 22 23345778888999999764
No 204
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=44.83 E-value=55 Score=27.33 Aligned_cols=93 Identities=15% Similarity=0.144 Sum_probs=50.7
Q ss_pred hhHHHHHhcCCEEEeccC-CcccchHHHHHHhc-CCCeEEecCCCCCcc--ccccC------------CCCeeEEeCCCC
Q 017114 234 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSS-GIPVVGVRAGGIPDI--IPEDQ------------DGKIGYLFNPGD 297 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~-G~PvI~~~~~~~~~~--~~~~~------------~~~~g~~~~~~~ 297 (377)
..-..-++.||++|.-.. .|+|-.++++++.. ++++|.... ++.-+ -.... ..+.-+..+|.+
T Consensus 62 p~d~~~l~~ADlvv~~G~~lE~w~~k~~~~~~~~~~~~v~~s~-~i~~~~~~~~~~~~~~~~~~~~~~~~DPHvWldp~n 140 (312)
T 2o1e_A 62 PKDIANIQDADLFVYNSEYMETWVPSAEKSMGQGHAVFVNASK-GIDLMEGSEEEHEEHDHGEHEHSHAMDPHVWLSPVL 140 (312)
T ss_dssp HHHHHHHHHSSEEEESCTTTSTTHHHHHHTTCSSSCEEEETTT-TCCCCCC----------------CCCCCGGGGSHHH
T ss_pred HHHHHHHhcCCEEEEcCCChHhHHHHHHHhcccCCCeEEEecC-CcccccCcccccccccccccccCCCCCCCcccCHHH
Confidence 344567889999997654 67888888887654 344553322 22111 00000 012224444445
Q ss_pred HHHHHHHHHHHhh--CHHHHHHHHHHHHHHHH
Q 017114 298 LDDCLSKLEPLLY--NQELRETMGQAARQEME 327 (377)
Q Consensus 298 ~~~l~~~i~~~~~--~~~~~~~~~~~~~~~~~ 327 (377)
...+++.|.+.+. ||+....+.+|+..+.+
T Consensus 141 ~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~ 172 (312)
T 2o1e_A 141 AQKEVKNITAQIVKQDPDNKEYYEKNSKEYIA 172 (312)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 5566666666554 77766666666665543
No 205
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=43.59 E-value=73 Score=21.52 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=57.3
Q ss_pred ceEEEEecCcc-HHHHHHhhcCCCE-EEccccCchhHHHHHhc--CCEEEeccCC-cccchHHHHHHhc-----CCCeEE
Q 017114 202 ARIAFIGDGPY-REELEKMFTGMPA-VFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMSS-----GIPVVG 271 (377)
Q Consensus 202 ~~l~i~G~g~~-~~~l~~~~~~~~v-~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a~-----G~PvI~ 271 (377)
.++.++.+.+. .+.+.......+. .....-+.++....+.. .|++++-... +.-|..+++.+.. ..|+|.
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 86 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFII 86 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEE
Confidence 45666665432 3344444443322 12222222455455443 5777764332 3345667777643 466765
Q ss_pred ec-CCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 272 VR-AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 272 ~~-~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.. .+.. .+.+ +.|..+++..|.+.+++.+++..++.
T Consensus 87 ~s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 87 LTAQGDRALVQKAA---ALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp CCSCCCHHHHHHHH---HHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 43 2221 1223 34667889999999999999987653
No 206
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=42.15 E-value=81 Score=21.63 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=42.0
Q ss_pred CCEEEeccCC-cccchHHHHHHh----cCCCeEEe-cCCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 243 GDVFVMPSES-ETLGLVVLEAMS----SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 243 adi~v~ps~~-e~~~~~~~Ea~a----~G~PvI~~-~~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.|++++-... +.-|..+++.+. ...|||.. ..... .+.+ +.|-.+++..|.+.+++.+++..++.
T Consensus 53 ~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 53 YNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFADDSNIKECL---ESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCCSHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCCCHHHHHHHH---HcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 5888774432 233556666654 24677643 33332 2333 45778999999999999999988765
No 207
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.11 E-value=87 Score=21.93 Aligned_cols=62 Identities=13% Similarity=0.104 Sum_probs=33.1
Q ss_pred CCceEEEEecC-ccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 200 PEARIAFIGDG-PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 200 ~~~~l~i~G~g-~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
.++.+.+.|.- ..++.+++++...+-.+...++. .++.+|... .-+.++..|...|+|||..
T Consensus 24 ~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~--------~~ThLI~~~---~~~~K~~~A~~~gi~IV~~ 86 (129)
T 2d8m_A 24 QGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTR--------DSTHLICAF---ANTPKYSQVLGLGGRIVRK 86 (129)
T ss_dssp TTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCCT--------TCCEEEESS---SSCHHHHHHHHHTCEEEET
T ss_pred CCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcCC--------CCeEEEecC---CCChHHHHHHHCCCcEecH
Confidence 45555555532 24455555555555445444432 244444432 2356677777778887753
No 208
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=41.43 E-value=44 Score=22.91 Aligned_cols=68 Identities=16% Similarity=0.073 Sum_probs=42.9
Q ss_pred HHHhcCCEEEeccCC-----cccchHHHHHHhcCCCeEEecCCCCC---ccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 238 QAYASGDVFVMPSES-----ETLGLVVLEAMSSGIPVVGVRAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 238 ~~~~~adi~v~ps~~-----e~~~~~~~Ea~a~G~PvI~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
.-++.||++|...-. +...-=+-.|...|+|+|+-..-+.. ..+ .+.+--+-..+.+.+.++|...+
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P~~l-----~~~a~~iV~Wn~~~I~~aI~~~~ 108 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVPPEL-----EAVSSEVVGWNPHCIRDALEDAL 108 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCCTTH-----HHHCSEEECSCHHHHHHHHHHHH
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCCHHH-----HhhCceeccCCHHHHHHHHHhcc
Confidence 567888988875432 22333466788899999987654433 333 11122233568899999998765
Q ss_pred h
Q 017114 310 Y 310 (377)
Q Consensus 310 ~ 310 (377)
+
T Consensus 109 ~ 109 (111)
T 1eiw_A 109 D 109 (111)
T ss_dssp C
T ss_pred C
Confidence 3
No 209
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=41.43 E-value=27 Score=27.64 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=28.0
Q ss_pred hhHHHHH-hcCCEEEeccCCcccchHHHHHHhcCCCeEEecC
Q 017114 234 EELSQAY-ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 274 (377)
Q Consensus 234 ~~~~~~~-~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~ 274 (377)
+++.+++ ..+|+++..+.....--.+.+++..|++||+...
T Consensus 41 ~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~l~~G~~vv~~~~ 82 (236)
T 2dc1_A 41 RGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIVLST 82 (236)
T ss_dssp SSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEEESCG
T ss_pred CCHHHHhcCCCCEEEECCCHHHHHHHHHHHHHCCCcEEEECc
Confidence 3455556 6889988776544444456788889999887643
No 210
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=41.39 E-value=48 Score=25.56 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=43.4
Q ss_pred hhHHHHHhc--CCEEEeccCCcccchHHHHHHh--c-CCCeEEe-cCCCC---CccccccCCCCeeEEeCCC-CHHHHHH
Q 017114 234 EELSQAYAS--GDVFVMPSESETLGLVVLEAMS--S-GIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPG-DLDDCLS 303 (377)
Q Consensus 234 ~~~~~~~~~--adi~v~ps~~e~~~~~~~Ea~a--~-G~PvI~~-~~~~~---~~~~~~~~~~~~g~~~~~~-~~~~l~~ 303 (377)
++....+.. .|++++|. .-|..+++.+. . .+|||.- ..... .+.+ ..|-.+++..|. +++++.+
T Consensus 34 ~~al~~l~~~~~dlvilp~---~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~---~~Ga~~~l~Kp~~~~~~L~~ 107 (223)
T 2hqr_A 34 EDGEYLMDIRNYDLVMVSD---KNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAF---EQGADDYIAKPYRSIKALVA 107 (223)
T ss_dssp HHHHHHHTTSCCSEEEECC---TTHHHHHHHHHHHCTTSEEEEEESSCCHHHHHHHH---HHTCSEEEETTCSCTHHHHH
T ss_pred HHHHHHHhcCCCCEEEeCC---CCHHHHHHHHHhCCCCCcEEEEECCCCHHHHHHHH---HcCCCEEEECCCCCHHHHHH
Confidence 455555443 57777332 23445555543 2 6777654 33222 2223 446678999999 9999999
Q ss_pred HHHHHhhC
Q 017114 304 KLEPLLYN 311 (377)
Q Consensus 304 ~i~~~~~~ 311 (377)
+|..++..
T Consensus 108 ~i~~~~~~ 115 (223)
T 2hqr_A 108 RIEARLRF 115 (223)
T ss_dssp HHHHHTSS
T ss_pred HHHHHhcc
Confidence 99988753
No 211
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=41.34 E-value=71 Score=26.97 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=29.0
Q ss_pred hhHHHHHhcCCEEEe--ccCCc---ccchHHHHHHhcCCCeEEecCC
Q 017114 234 EELSQAYASGDVFVM--PSESE---TLGLVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 234 ~~~~~~~~~adi~v~--ps~~e---~~~~~~~Ea~a~G~PvI~~~~~ 275 (377)
.++.+++++||++++ |...+ -++-..+..|--|.-+|-+.-|
T Consensus 186 ~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG 232 (334)
T 3kb6_A 186 TSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARG 232 (334)
T ss_dssp CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred cCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCcc
Confidence 357788999999876 43333 3567788888777777755444
No 212
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Probab=40.94 E-value=36 Score=28.27 Aligned_cols=86 Identities=21% Similarity=0.210 Sum_probs=48.3
Q ss_pred CCeEEEeecccccccHHHHHHHHHhCCCceEE-EEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCC
Q 017114 174 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIA-FIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES 252 (377)
Q Consensus 174 ~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~-i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~ 252 (377)
+..+..+|.-. -| ..+++++...++++++ +++..+ +..+. .++. +...+++.+. ..+|+++..+..
T Consensus 9 ~irv~IIG~G~--iG-~~~~~~l~~~~~~elvav~d~~~--~~~~~----~g~~---~~~~~~l~~~-~~~DvViiatp~ 75 (304)
T 3bio_A 9 KIRAAIVGYGN--IG-RYALQALREAPDFEIAGIVRRNP--AEVPF----ELQP---FRVVSDIEQL-ESVDVALVCSPS 75 (304)
T ss_dssp CEEEEEECCSH--HH-HHHHHHHHHCTTEEEEEEECC-------------CCTT---SCEESSGGGS-SSCCEEEECSCH
T ss_pred CCEEEEECChH--HH-HHHHHHHhcCCCCEEEEEEcCCH--HHHHH----cCCC---cCCHHHHHhC-CCCCEEEECCCc
Confidence 35677776411 12 2357777778888877 444332 22222 1221 1122455554 688999887654
Q ss_pred cccchHHHHHHhcCCCeEEe
Q 017114 253 ETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 253 e~~~~~~~Ea~a~G~PvI~~ 272 (377)
....-.+.+++..|++||+.
T Consensus 76 ~~h~~~~~~al~aG~~Vi~e 95 (304)
T 3bio_A 76 REVERTALEILKKGICTADS 95 (304)
T ss_dssp HHHHHHHHHHHTTTCEEEEC
T ss_pred hhhHHHHHHHHHcCCeEEEC
Confidence 44445577899999999964
No 213
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=40.51 E-value=1.4e+02 Score=24.10 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=25.0
Q ss_pred CCCEEEeCCCchhHHHHHHHHHhhCCCEEEEecc
Q 017114 55 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 88 (377)
Q Consensus 55 ~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 88 (377)
.||+|++.++..-. .++.-|...|+|+|-.+..
T Consensus 158 ~Pdll~V~Dp~~e~-~Ai~EA~~l~IPvIaivDT 190 (256)
T 2vqe_B 158 LPDAIFVVDPTKEA-IAVREARKLFIPVIALADT 190 (256)
T ss_dssp CCSEEEESCTTTTH-HHHHHHHHTTCCCEECCCT
T ss_pred CCCEEEEeCCccch-HHHHHHHHcCCCEEEEecC
Confidence 79999999875433 3456788899999876654
No 214
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=40.25 E-value=1.3e+02 Score=25.49 Aligned_cols=40 Identities=15% Similarity=0.354 Sum_probs=26.5
Q ss_pred hhHHHHHhcCCEEEec--cCC---cccchHHHHHHhcCCCeEEec
Q 017114 234 EELSQAYASGDVFVMP--SES---ETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 234 ~~~~~~~~~adi~v~p--s~~---e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
+++.++++.||++++. ... .-++...+..|--|.-+|-+.
T Consensus 219 ~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~a 263 (345)
T 4g2n_A 219 DTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINIS 263 (345)
T ss_dssp SSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECS
T ss_pred CCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECC
Confidence 4788899999998863 222 234556777777776666443
No 215
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=40.15 E-value=50 Score=28.40 Aligned_cols=91 Identities=10% Similarity=0.075 Sum_probs=52.4
Q ss_pred CCCCeEEEeecccccccHHHHHHHHHhCC-CceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEecc
Q 017114 172 PDKPLIVHVGRLGVEKSLDFLKRVMDRLP-EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 250 (377)
Q Consensus 172 ~~~~~i~~~G~~~~~k~~~~l~~a~~~l~-~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps 250 (377)
..+..++.+|.- . | ..-++++..++ +++++=+.+ ...+..++.+++.++... .++.+++...|+.++.+
T Consensus 5 ~~~~rv~VvG~G-~--g-~~h~~a~~~~~~~~elvav~~-~~~~~a~~~a~~~gv~~~-----~~~~~l~~~~D~v~i~~ 74 (372)
T 4gmf_A 5 SPKQRVLIVGAK-F--G-EMYLNAFMQPPEGLELVGLLA-QGSARSRELAHAFGIPLY-----TSPEQITGMPDIACIVV 74 (372)
T ss_dssp --CEEEEEECST-T--T-HHHHHTTSSCCTTEEEEEEEC-CSSHHHHHHHHHTTCCEE-----SSGGGCCSCCSEEEECC
T ss_pred CCCCEEEEEehH-H--H-HHHHHHHHhCCCCeEEEEEEC-CCHHHHHHHHHHhCCCEE-----CCHHHHhcCCCEEEEEC
Confidence 356778888852 1 3 35677777776 477763333 233445555655566432 23444556788876644
Q ss_pred CCccc----chHHHHHHhcCCCeEEe
Q 017114 251 ESETL----GLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 251 ~~e~~----~~~~~Ea~a~G~PvI~~ 272 (377)
..... .-...+++..|++|++-
T Consensus 75 p~~~h~~~~~~~a~~al~aGkhVl~E 100 (372)
T 4gmf_A 75 RSTVAGGAGTQLARHFLARGVHVIQE 100 (372)
T ss_dssp C--CTTSHHHHHHHHHHHTTCEEEEE
T ss_pred CCcccchhHHHHHHHHHHcCCcEEEe
Confidence 32221 23467889999999964
No 216
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=39.99 E-value=1.3e+02 Score=26.37 Aligned_cols=95 Identities=16% Similarity=-0.027 Sum_probs=55.3
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhc---CCC---EEEccccCchhHHHHHh--cCC
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT---GMP---AVFTGMLLGEELSQAYA--SGD 244 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~---~~~---v~~~g~~~~~~~~~~~~--~ad 244 (377)
++..+..+|--.- | ...++++...++++++-+.+. ..+..++..+ +.+ +..... ..+++.++++ ..|
T Consensus 19 ~~~rvgiIG~G~~--g-~~h~~~l~~~~~~~lvav~d~-~~~~~~~~a~~~~~~g~~~~~~~~~-~~~~~~~ll~~~~vD 93 (444)
T 2ixa_A 19 KKVRIAFIAVGLR--G-QTHVENMARRDDVEIVAFADP-DPYMVGRAQEILKKNGKKPAKVFGN-GNDDYKNMLKDKNID 93 (444)
T ss_dssp CCEEEEEECCSHH--H-HHHHHHHHTCTTEEEEEEECS-CHHHHHHHHHHHHHTTCCCCEEECS-STTTHHHHTTCTTCC
T ss_pred CCceEEEEecCHH--H-HHHHHHHHhCCCcEEEEEEeC-CHHHHHHHHHHHHhcCCCCCceecc-CCCCHHHHhcCCCCC
Confidence 4466777774211 2 235677777788888755543 2233333221 111 221110 1236777777 478
Q ss_pred EEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 245 VFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 245 i~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
+++..+......-.+.+|+..|++|++-
T Consensus 94 ~V~i~tp~~~h~~~~~~al~aGkhV~~E 121 (444)
T 2ixa_A 94 AVFVSSPWEWHHEHGVAAMKAGKIVGME 121 (444)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEEC
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCeEEEe
Confidence 8888776555566778899999999974
No 217
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=39.63 E-value=37 Score=27.87 Aligned_cols=92 Identities=17% Similarity=0.146 Sum_probs=49.2
Q ss_pred hHHHHHhcCCEEEeccC-CcccchHHHHHHhc-CCCeEEecCCCCCcc-ccccC------------CCCeeEEeCCCCHH
Q 017114 235 ELSQAYASGDVFVMPSE-SETLGLVVLEAMSS-GIPVVGVRAGGIPDI-IPEDQ------------DGKIGYLFNPGDLD 299 (377)
Q Consensus 235 ~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~-G~PvI~~~~~~~~~~-~~~~~------------~~~~g~~~~~~~~~ 299 (377)
.-..-++.||++|.-.. .|+|-.++++++.. ++++|.... ++.-+ ..... ..+.-+..+|.+..
T Consensus 51 ~d~~~l~~Adlvv~~G~~lE~w~~~~~~~~~~~~~~~v~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~ 129 (284)
T 3cx3_A 51 NDIAAIYDADVFVYHSHTLESWAGSLDPNLKKSKVKVLEASE-GMTLERVPGLEDVEAGDGVDEKTLYDPHTWLDPEKAG 129 (284)
T ss_dssp HHHHHHHHSSEEEESCTTTSCTTTTCCTTTTTCCCEEEETTT-TCCCCBCCC-------------CCBCCCGGGSHHHHH
T ss_pred HHHHHHHhCCEEEEcCCCcHhHHHHHHHhcccCCCeEEEccC-CccccccCCcccccccccccCCCCCCCCcccCHHHHH
Confidence 44466889999987653 67777777776653 344553322 21110 00000 01222444444555
Q ss_pred HHHHHHHHHhh--CHHHHHHHHHHHHHHHH
Q 017114 300 DCLSKLEPLLY--NQELRETMGQAARQEME 327 (377)
Q Consensus 300 ~l~~~i~~~~~--~~~~~~~~~~~~~~~~~ 327 (377)
.+++.|.+.+. ||+......+|+..+.+
T Consensus 130 ~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~ 159 (284)
T 3cx3_A 130 EEAQIIADKLSEVDSEHKETYQKNAQAFIK 159 (284)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 66666666554 77766666666665543
No 218
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=39.53 E-value=1.6e+02 Score=24.15 Aligned_cols=150 Identities=14% Similarity=0.149 Sum_probs=71.3
Q ss_pred HHHHHHHhcCCeeEecChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHHHHhhCCCCCCCeEEEeecccccc
Q 017114 108 LVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK 187 (377)
Q Consensus 108 ~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k 187 (377)
...++.-...|.|++........+..... .-++ +..++............ ..++.. +.-+....
T Consensus 61 ~~~~l~~~~~DlIiai~t~aa~a~~~~~~--~iPV--Vf~~v~dp~~~~l~~~~--------~~~g~n-vtGv~~~~--- 124 (302)
T 3lkv_A 61 IARQFVGENPDVLVGIATPTAQALVSATK--TIPI--VFTAVTDPVGAKLVKQL--------EQPGKN-VTGLSDLS--- 124 (302)
T ss_dssp HHHHHHTTCCSEEEEESHHHHHHHHHHCS--SSCE--EEEEESCTTTTTSCSCS--------SSCCSS-EEEEECCC---
T ss_pred HHHHHHhcCCcEEEEcCCHHHHHHHhhcC--CCCe--EEEecCCcchhhhcccc--------cCCCCc-EEEEECCc---
Confidence 34566667899999988777776665432 2233 32233211100000000 112222 22222222
Q ss_pred cHHHHHHHHHh-CCCc-eEEEEecCc------cHHHHHHhhcCCCEE--EccccCchhHH----HHHhcCCEEEeccCC-
Q 017114 188 SLDFLKRVMDR-LPEA-RIAFIGDGP------YREELEKMFTGMPAV--FTGMLLGEELS----QAYASGDVFVMPSES- 252 (377)
Q Consensus 188 ~~~~l~~a~~~-l~~~-~l~i~G~g~------~~~~l~~~~~~~~v~--~~g~~~~~~~~----~~~~~adi~v~ps~~- 252 (377)
.++..++.+.+ +|+. ++.++++.. ..+.+++.+...++. .....+.+++. .+....|+++.+...
T Consensus 125 ~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~~ 204 (302)
T 3lkv_A 125 PVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNT 204 (302)
T ss_dssp CHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSCHH
T ss_pred CHHHHHHHHHHhCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCCcc
Confidence 23444444444 3654 344554322 123444555444433 33333334444 344668888877542
Q ss_pred --cccchHHHHHHhcCCCeEEec
Q 017114 253 --ETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 253 --e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
........-+...++||++.+
T Consensus 205 ~~~~~~~i~~~~~~~~iPv~~~~ 227 (302)
T 3lkv_A 205 VASAIEGMIVAANQAKTPVFGAA 227 (302)
T ss_dssp HHHTHHHHHHHHHHTTCCEEESS
T ss_pred hhhHHHHHHHHHhhcCCceeecc
Confidence 223333445678899999864
No 219
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=38.89 E-value=1.7e+02 Score=25.70 Aligned_cols=107 Identities=20% Similarity=0.171 Sum_probs=58.0
Q ss_pred eEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccCC-cccchHHHHHHhc-----CCCeEEe-
Q 017114 203 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMSS-----GIPVVGV- 272 (377)
Q Consensus 203 ~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a~-----G~PvI~~- 272 (377)
+++|+.+.+ ....+.......+......-+.++....+. ..|++++-... +.-|..+++.+.. .+|||.-
T Consensus 3 ~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii~lt 82 (459)
T 1w25_A 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLIT 82 (459)
T ss_dssp EEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEEEEE
Confidence 345555443 233344333322222222222244444443 35777764332 2335666666642 5787743
Q ss_pred cCCCCC---ccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCH
Q 017114 273 RAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 312 (377)
Q Consensus 273 ~~~~~~---~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 312 (377)
...... +.+ +.|-.+++..|.+.+++..++..++...
T Consensus 83 ~~~~~~~~~~a~---~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 83 ALDGRGDRIQGL---ESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp CSSCHHHHHHHH---HHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH---HcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 333322 233 4567889999999999999999887543
No 220
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=38.68 E-value=74 Score=21.19 Aligned_cols=104 Identities=25% Similarity=0.333 Sum_probs=54.0
Q ss_pred eEEEEecCc-cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCCcc-cchHHHHHH---hcCCCeEEe-cC
Q 017114 203 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESET-LGLVVLEAM---SSGIPVVGV-RA 274 (377)
Q Consensus 203 ~l~i~G~g~-~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~e~-~~~~~~Ea~---a~G~PvI~~-~~ 274 (377)
++.++.+.+ ....+.......+......-+.++....+.. .|++++-....+ -|..+++.+ ..+.|+|.. ..
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1dc7_A 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAH 84 (124)
T ss_dssp CCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCS
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEecC
Confidence 455555443 3344444444333222222222455555443 577766433221 233334443 345777643 22
Q ss_pred C---CCCccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 275 G---GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 275 ~---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
. .....+ ..|-.+++..|.+.+++..++..++
T Consensus 85 ~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~ 119 (124)
T 1dc7_A 85 SDLDAAVSAY---QQGAFDYLPKPFDIDEAVALVERAI 119 (124)
T ss_dssp TTSTTTTSSC---TTCCCCCBCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHH---hcCcceEeeCCCCHHHHHHHHHHHH
Confidence 2 223333 5566788999999999999998765
No 221
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=37.94 E-value=95 Score=21.18 Aligned_cols=106 Identities=14% Similarity=0.097 Sum_probs=57.2
Q ss_pred eEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccCC-cccchHHHHHHh---cCCCeEEe-cC
Q 017114 203 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-RA 274 (377)
Q Consensus 203 ~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~~-~~ 274 (377)
++.++.+.+. ...+.......+......-+.++....+. ..|++++-... +.-|..+++.+. ..+|+|.. ..
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (136)
T 1mvo_A 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAK 84 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECT
T ss_pred EEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 4555654432 23333333322322222222244444443 35787764432 233555666553 45677643 33
Q ss_pred CCCC---ccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 275 GGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 275 ~~~~---~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
.... ..+ +.|..+++..|.+.+++..++..++..
T Consensus 85 ~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 85 DEEFDKVLGL---ELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp TCCCCHHHHH---HTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHH---hCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 3222 233 457788999999999999999888764
No 222
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=37.74 E-value=93 Score=25.30 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=43.2
Q ss_pred cCchhHHHHHhcCCEEEeccC---CcccchHHHHHHhcCCCeEEe--cCCCCCccccccCCCCeeEEeCCCCHHHHHHHH
Q 017114 231 LLGEELSQAYASGDVFVMPSE---SETLGLVVLEAMSSGIPVVGV--RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKL 305 (377)
Q Consensus 231 ~~~~~~~~~~~~adi~v~ps~---~e~~~~~~~Ea~a~G~PvI~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i 305 (377)
.+.+....++..||+++.+.. ..++. .+++..-.+..+|.. ..+-.++++...-+.-.|..+. |++.+.+.+
T Consensus 175 ~p~~~~e~ll~~aD~viiTGsTlvN~Ti~-~lL~~~~~a~~vvl~GPS~p~~P~lf~~Gv~~l~G~~V~--D~~~~~~~i 251 (270)
T 2h1q_A 175 YPLPASEFILPECDYVYITCASVVDKTLP-RLLELSRNARRITLVGPGTPLAPVLFEHGLQELSGFMVK--DNARAFRIV 251 (270)
T ss_dssp EEGGGHHHHGGGCSEEEEETHHHHHTCHH-HHHHHTTTSSEEEEESTTCCCCGGGGGTTCSEEEEEEES--CHHHHHHHH
T ss_pred CChHHHHHHhhcCCEEEEEeeeeecCCHH-HHHHhCccCCeEEEEecChhhhHHHHhcCcCEEEEeEec--CHHHHHHHH
Confidence 354566678999999998753 12222 355655555455543 3455666662222233466665 788887776
Q ss_pred HH
Q 017114 306 EP 307 (377)
Q Consensus 306 ~~ 307 (377)
.+
T Consensus 252 ~~ 253 (270)
T 2h1q_A 252 AG 253 (270)
T ss_dssp TT
T ss_pred Hc
Confidence 54
No 223
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=37.15 E-value=86 Score=21.56 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=35.9
Q ss_pred EEccccCchhHHHHHhcCCEEEeccCC--cccchHHHHHHhcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHH
Q 017114 226 VFTGMLLGEELSQAYASGDVFVMPSES--ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLS 303 (377)
Q Consensus 226 ~~~g~~~~~~~~~~~~~adi~v~ps~~--e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 303 (377)
.+.-++|.+.+.++++.++.++..-.. .+++.-+-. .+|.+++ ..+. +-.|. +-+++++.+
T Consensus 48 r~~~P~d~~~l~~~~~~~~~vvvvE~~~~G~l~~~i~~--~~~~~~~-------~~i~-----~~~G~---~~~~~ei~~ 110 (118)
T 3ju3_A 48 KMFSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMIKL--YTGIDIK-------NKIL-----KYNGR---HMTEDEILK 110 (118)
T ss_dssp CSSCSCCHHHHHHHHTTCSCCCCCCCCCCCCHHHHHHH--HHCCCCC-------CCCC-----CBTTB---CCCHHHHHH
T ss_pred CeEecCCHHHHHHHHcCCCEEEEEECCCCCcHHHHHHH--HcCCCce-------eEEe-----eeCCe---eCCHHHHHH
Confidence 344456667788888888766654332 334433322 2333211 1111 22233 447899999
Q ss_pred HHHHHh
Q 017114 304 KLEPLL 309 (377)
Q Consensus 304 ~i~~~~ 309 (377)
.+.+++
T Consensus 111 ~i~~~~ 116 (118)
T 3ju3_A 111 SAKEIL 116 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988765
No 224
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=37.06 E-value=1.1e+02 Score=23.74 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=49.7
Q ss_pred ecccccccHHHHHHHHHhC----CCceEEEEecCccHHHHHHh--hcCCCEEEcccc-----------------CchhHH
Q 017114 181 GRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKM--FTGMPAVFTGML-----------------LGEELS 237 (377)
Q Consensus 181 G~~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l~~~--~~~~~v~~~g~~-----------------~~~~~~ 237 (377)
|.-+....++.+++.++.. ...++.|+|.|.....+.+. ... ++.+.|++ +.+++.
T Consensus 56 G~~g~gY~v~~L~~~~~~~lg~~~~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ 134 (211)
T 2dt5_A 56 GTRGVGYTVPVLKRELRHILGLNRKWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLP 134 (211)
T ss_dssp CCTTTCEEHHHHHHHHHHHHTTTSCEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHH
T ss_pred cCCceeEEhHHHHHHHHHHhCcCCCCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHH
Confidence 3333333455555554332 34677888877655555442 111 22222222 135677
Q ss_pred HHHhc-CCEEEeccCCcccchHHHHHHhcCCCeEEecCC
Q 017114 238 QAYAS-GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 238 ~~~~~-adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 275 (377)
++++. .|++++........-..-.+..+|+..|..-.+
T Consensus 135 ell~~~ID~ViIA~Ps~~~~ei~~~l~~aGi~~Ilnf~P 173 (211)
T 2dt5_A 135 QRVPGRIEIALLTVPREAAQKAADLLVAAGIKGILNFAP 173 (211)
T ss_dssp HHSTTTCCEEEECSCHHHHHHHHHHHHHHTCCEEEECSS
T ss_pred HHHHcCCCEEEEeCCchhHHHHHHHHHHcCCCEEEECCc
Confidence 77764 677776543333334566778899997755443
No 225
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=36.94 E-value=97 Score=20.98 Aligned_cols=106 Identities=15% Similarity=0.217 Sum_probs=59.4
Q ss_pred eEEEEecCcc-HHHHHHhhcCC-CEEEcccc-CchhHHHHHh--cCCEEEeccCC-cccchHHHHHHh----cCCCeEE-
Q 017114 203 RIAFIGDGPY-REELEKMFTGM-PAVFTGML-LGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS----SGIPVVG- 271 (377)
Q Consensus 203 ~l~i~G~g~~-~~~l~~~~~~~-~v~~~g~~-~~~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a----~G~PvI~- 271 (377)
++.++.+.+. .+.+....... +....+.. +.++....+. ..|++++-... +.-|..+++.+. ...|+|.
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii~l 83 (130)
T 1dz3_A 4 KVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIML 83 (130)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEEEE
Confidence 4566665442 34445544443 44433322 2245544443 35887764432 233555666553 2456653
Q ss_pred ecCCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 272 VRAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 272 ~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
+..... .+.+ +.|-.+++..|.+.+++.+++..++..
T Consensus 84 s~~~~~~~~~~~~---~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 84 TAFGQEDVTKKAV---ELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp EETTCHHHHHHHH---HTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred ecCCCHHHHHHHH---HcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 333322 2233 457788999999999999999887653
No 226
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=36.70 E-value=89 Score=25.41 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=44.0
Q ss_pred cccCchhHHHHHhcCCEEEeccC--CcccchHHHHHHhcCCCeE--EecCCCCCccccccCCCCeeEEeCCCCHHHHHHH
Q 017114 229 GMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVV--GVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 304 (377)
Q Consensus 229 g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 304 (377)
|..|.++...++..||+++.+.. ..+.=-.++|..-.+..|| .+..+-.++++....+.-.|..+. |++.+.+.
T Consensus 173 g~~p~~~~~~~lp~~D~viiTgstlvN~Tl~~lL~~~~~a~~vvl~GPStp~~P~lf~~Gv~~laG~~V~--d~~~~~~~ 250 (270)
T 3l5o_A 173 GDYPLPASEFILPECDYVYITCASVVDKTLPRLLELSRNARRITLVGPGTPLAPVLFEHGLQELSGFMVK--DNARAFRI 250 (270)
T ss_dssp TCEEGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTSSEEEEESTTCCCCGGGGGTTCSEEEEEEES--CHHHHHHH
T ss_pred CCCChhHHHHhhccCCEEEEEeehhhcCCHHHHHhhCCCCCEEEEECCCchhhHHHHhcCcCEEEEEEEc--CHHHHHHH
Confidence 33455667779999999998753 1111123556555555553 334556677772222233566665 77777776
Q ss_pred HH
Q 017114 305 LE 306 (377)
Q Consensus 305 i~ 306 (377)
+.
T Consensus 251 i~ 252 (270)
T 3l5o_A 251 VA 252 (270)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 227
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=36.59 E-value=78 Score=25.99 Aligned_cols=39 Identities=23% Similarity=0.121 Sum_probs=28.9
Q ss_pred hhHHHHHh--cCCEEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 234 EELSQAYA--SGDVFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 234 ~~~~~~~~--~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
.++.++++ ..|+++..+......-.+.+|+..|++|++-
T Consensus 55 ~~~~ell~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~E 95 (294)
T 1lc0_A 55 ISLEDALRSQEIDVAYICSESSSHEDYIRQFLQAGKHVLVE 95 (294)
T ss_dssp CCHHHHHHCSSEEEEEECSCGGGHHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHhcCCCCCEEEEeCCcHhHHHHHHHHHHCCCcEEEe
Confidence 46667776 5688887765545556678899999999985
No 228
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1
Probab=36.58 E-value=1.1e+02 Score=25.84 Aligned_cols=83 Identities=5% Similarity=-0.052 Sum_probs=43.3
Q ss_pred HHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccC-------------chhHHHHHhcCCEEEeccCCcccc
Q 017114 190 DFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLL-------------GEELSQAYASGDVFVMPSESETLG 256 (377)
Q Consensus 190 ~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~-------------~~~~~~~~~~adi~v~ps~~e~~~ 256 (377)
..+++++...|+++++-+.+... ......+........|..+ ..+..+++..+|+++..+-.....
T Consensus 14 ~~l~r~L~~~~~~elvav~d~~~-~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDvV~~atp~~~~~ 92 (337)
T 1cf2_P 14 KRVADAIAQQDDMKVIGVSKTRP-DFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIVIDCTPEGIGA 92 (337)
T ss_dssp HHHHHHHHTSSSEEEEEEEESSC-SHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEEEECCSTTHHH
T ss_pred HHHHHHHHcCCCcEEEEEEcCCh-hHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCEEEECCCchhhH
Confidence 45778777778888766653221 1111111111101111110 124455667899998765433222
Q ss_pred hHHHHHHhcCCCeEEec
Q 017114 257 LVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 257 ~~~~Ea~a~G~PvI~~~ 273 (377)
-..-.++..|++||.+.
T Consensus 93 ~~a~~~l~aG~~VId~s 109 (337)
T 1cf2_P 93 KNLKMYKEKGIKAIFQG 109 (337)
T ss_dssp HHHHHHHHHTCCEEECT
T ss_pred HHHHHHHHcCCEEEEec
Confidence 34456778899988664
No 229
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=36.54 E-value=47 Score=27.68 Aligned_cols=138 Identities=15% Similarity=0.186 Sum_probs=77.6
Q ss_pred HHHHHHHhcCCeeEecC--hhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchH---HHHHhhCCCCCCCeEEEeec
Q 017114 108 LVIKFLHRAADLTLVPS--VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVGR 182 (377)
Q Consensus 108 ~~~~~~~~~~d~ii~~s--~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G~ 182 (377)
-..+.+-+.+|.++.=. +...+.+.++. .+-|| |+-|.+..+|...-.+ .+..+ +.-+...|.|+|-
T Consensus 88 DTarvls~~~D~iviR~~~~~~~~~lA~~~-----~vPVI-Nag~g~~~HPtQ~LaDl~Ti~e~~--g~l~glkva~vGD 159 (306)
T 4ekn_B 88 DTIRVISGYADIIVLRHPSEGAARLASEYS-----QVPII-NAGDGSNQHPTQTLLDLYTIMREI--GRIDGIKIAFVGD 159 (306)
T ss_dssp HHHHHHHHHCSEEEEECSSTTHHHHHHHHC-----SSCEE-ESCSSSSCCHHHHHHHHHHHHHHH--SCSTTCEEEEESC
T ss_pred HHHHHHHHhCcEEEEEcCChHHHHHHHHhC-----CCCEE-eCCCCCCcCcHHHHHHHHHHHHHh--CCcCCCEEEEEcC
Confidence 34556667789887643 34445555442 23344 4555444554321111 12222 2346788999997
Q ss_pred ccccccHHHHHHHHHhCCCceEEEEecCcc--HHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccC-Ccccc
Q 017114 183 LGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLG 256 (377)
Q Consensus 183 ~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~--~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~-~e~~~ 256 (377)
.....-...++.++..++++++.+++...+ .+.+.+.+++.+..+.- ..++.+.++.||++..... .|.++
T Consensus 160 ~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~---~~d~~eav~~aDvvy~~~~q~er~~ 233 (306)
T 4ekn_B 160 LKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYE---KESLDDLDDDIDVLYVTRIQKERFP 233 (306)
T ss_dssp TTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEE---ESCGGGCCTTCSEEEECCCCGGGCC
T ss_pred CCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEE---EcCHHHHhcCCCEEEeCCcccccCC
Confidence 654445678888998888899999985322 23333333322222111 1466778899999887654 24444
No 230
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=36.38 E-value=92 Score=20.55 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=43.5
Q ss_pred hhHHHHHh--cCCEEEeccCC-cccchHHHHHHh--cCCCeEEecC-CCC---CccccccCCCCeeEEeCCCCHHHHHHH
Q 017114 234 EELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS--SGIPVVGVRA-GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSK 304 (377)
Q Consensus 234 ~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a--~G~PvI~~~~-~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~ 304 (377)
++....+. ..|++++-... +.-|..+++.+. ...|+|.... ... ...+ +.|..+++..|.+.+++.++
T Consensus 35 ~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~~~~~~~~~---~~g~~~~l~Kp~~~~~l~~~ 111 (120)
T 2a9o_A 35 REALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDSEFDKVIGL---ELGADDYVTKPFSNRELQAR 111 (120)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCCSHHHHHHHH---HHTCSEEEESSCCHHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCCchHHHHHHH---hCCHhheEeCCCCHHHHHHH
Confidence 44444433 36777764332 223445555543 5678775432 221 1222 34667899999999999999
Q ss_pred HHHHhh
Q 017114 305 LEPLLY 310 (377)
Q Consensus 305 i~~~~~ 310 (377)
+..++.
T Consensus 112 i~~~~~ 117 (120)
T 2a9o_A 112 VKALLR 117 (120)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 987764
No 231
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=36.19 E-value=1.4e+02 Score=22.71 Aligned_cols=105 Identities=18% Similarity=0.177 Sum_probs=57.6
Q ss_pred eEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccC-CcccchHHHHHHh---cCCCeEEec-C
Q 017114 203 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVR-A 274 (377)
Q Consensus 203 ~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~~~-~ 274 (377)
++.++.+.+. .+.+.......+......-+.++....+. ..|++++-.. .+.-|..+++.+. ..+|||... .
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~ 83 (225)
T 1kgs_A 4 RVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTAL 83 (225)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESS
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 4556654432 23334433333332222222244444443 3577776443 2334556666654 367877543 3
Q ss_pred CC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 275 GG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 275 ~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.. ..+.+ ..|-.+++..|.+++++.+++..++.
T Consensus 84 ~~~~~~~~~~---~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 84 SDVEYRVKGL---NMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp CHHHHHHHTC---CCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH---hCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 22 22333 55777899999999999999988764
No 232
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=35.64 E-value=33 Score=25.62 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=23.9
Q ss_pred HHHhcCCEEEeccC----CcccchHHHHHHhcCCCeEEec
Q 017114 238 QAYASGDVFVMPSE----SETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 238 ~~~~~adi~v~ps~----~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
..+..||++|.-.. ..|...=+-=|.+.|+||++-.
T Consensus 77 ~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 45899999887321 2233333444789999999874
No 233
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=35.58 E-value=1.5e+02 Score=25.25 Aligned_cols=94 Identities=11% Similarity=-0.022 Sum_probs=52.0
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCC
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES 252 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~ 252 (377)
....++.+|.-.- | ..+.+.+... .++.+++. ..+.++++............+.+++.++++.+|+++.....
T Consensus 15 ~~~~v~IiGaG~i--G-~~ia~~L~~~--~~V~V~~R--~~~~a~~la~~~~~~~~d~~~~~~l~~ll~~~DvVIn~~P~ 87 (365)
T 2z2v_A 15 RHMKVLILGAGNI--G-RAIAWDLKDE--FDVYIGDV--NNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPG 87 (365)
T ss_dssp -CCEEEEECCSHH--H-HHHHHHHTTT--SEEEEEES--CHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSCEEECCCH
T ss_pred CCCeEEEEcCCHH--H-HHHHHHHHcC--CeEEEEEC--CHHHHHHHHhhCCeEEEecCCHHHHHHHHhCCCEEEECCCh
Confidence 3445777774111 1 2233333333 56666664 34555555544332222223346788999999999986432
Q ss_pred cccchHHHHHHhcCCCeEEec
Q 017114 253 ETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 253 e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
......+..++..|+.++...
T Consensus 88 ~~~~~v~~a~l~~G~~~vD~s 108 (365)
T 2z2v_A 88 FLGFKSIKAAIKSKVDMVDVS 108 (365)
T ss_dssp HHHHHHHHHHHHTTCCEEECC
T ss_pred hhhHHHHHHHHHhCCeEEEcc
Confidence 212235667788999998643
No 234
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=35.47 E-value=1.7e+02 Score=23.30 Aligned_cols=108 Identities=9% Similarity=0.140 Sum_probs=62.7
Q ss_pred CCceEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhc---CCEEEeccC-CcccchHHHHHHhc-----CCCe
Q 017114 200 PEARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSE-SETLGLVVLEAMSS-----GIPV 269 (377)
Q Consensus 200 ~~~~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~---adi~v~ps~-~e~~~~~~~Ea~a~-----G~Pv 269 (377)
...++.++-+.+. .+.+..............-+.++....+.. .|++++-.. .+.-|..+++.+.. .+||
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~i 202 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAI 202 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeE
Confidence 4577778776543 233344444433333333334566666653 366665433 23345666666542 4677
Q ss_pred EEe-cCCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 270 VGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 270 I~~-~~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
|+. ..... .+.+ +.|-.+++..|.+++++...+..+++
T Consensus 203 i~~s~~~~~~~~~~a~---~~Ga~~yl~KP~~~~~L~~~i~~~l~ 244 (259)
T 3luf_A 203 IGISVSDKRGLSARYL---KQGANDFLNQPFEPEELQCRVSHNLE 244 (259)
T ss_dssp EEEECSSSSSHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEccCCHHHHHHHH---hcChhheEcCCCCHHHHHHHHHHHHH
Confidence 743 33222 2224 56778999999999999999988765
No 235
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=35.20 E-value=1.2e+02 Score=21.36 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=42.4
Q ss_pred CCEEEeccC-CcccchHHHHHHh---cCCCeEEe-cCCCC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 243 GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 243 adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~~-~~~~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
.|++++-.. .+.-|..+++.+. ..+|||.. ..... .+.+ ..+..+++..|.+.+++.+++..++..
T Consensus 62 ~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~---~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 62 PDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQAL---QQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp CSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHH---HTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHH---HcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 577766443 2334555665554 34667644 33322 2334 557788999999999999999998875
No 236
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=35.12 E-value=1.5e+02 Score=24.62 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=23.8
Q ss_pred hhHHHHHhcCCEEEec--cCCc---ccchHHHHHHhcCCCeEEe
Q 017114 234 EELSQAYASGDVFVMP--SESE---TLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 234 ~~~~~~~~~adi~v~p--s~~e---~~~~~~~Ea~a~G~PvI~~ 272 (377)
.++.++++.||++++. ...+ -++...+..|--|.-+|-+
T Consensus 185 ~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~ 228 (315)
T 3pp8_A 185 EELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNL 228 (315)
T ss_dssp HHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEEC
T ss_pred CCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEEC
Confidence 5788899999998763 2222 2344555556555545533
No 237
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=35.02 E-value=1.1e+02 Score=20.92 Aligned_cols=75 Identities=13% Similarity=0.206 Sum_probs=46.2
Q ss_pred hhHHHHHh--cCCEEEeccCC-cccchHHHHHHh---cCCCeEEe-cCCC---CCccccccCCCCeeEEeCCCCHHHHHH
Q 017114 234 EELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLS 303 (377)
Q Consensus 234 ~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~~-~~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~ 303 (377)
.+....+. ..|++++-... +.-|..+++.+. ...|+|.. .... ..+.+ ..+-.+++..|.+.+++.+
T Consensus 39 ~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~L~~ 115 (133)
T 3b2n_A 39 LDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGYFEKAV---VNDVDAYVLKERSIEELVE 115 (133)
T ss_dssp HHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHH---HTTCSEEEETTSCHHHHHH
T ss_pred HHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCCCHHHHHHHH---HcCCcEEEECCCCHHHHHH
Confidence 44444443 36887765432 233556666664 35777643 3332 22333 4577899999999999999
Q ss_pred HHHHHhhC
Q 017114 304 KLEPLLYN 311 (377)
Q Consensus 304 ~i~~~~~~ 311 (377)
++..++..
T Consensus 116 ~i~~~~~~ 123 (133)
T 3b2n_A 116 TINKVNNG 123 (133)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHcC
Confidence 99888754
No 238
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A
Probab=35.01 E-value=1.7e+02 Score=24.90 Aligned_cols=42 Identities=19% Similarity=0.344 Sum_probs=28.1
Q ss_pred hhHHHHHhcCCEEEec--cC---CcccchHHHHHHhcCCCeEEecCC
Q 017114 234 EELSQAYASGDVFVMP--SE---SETLGLVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 234 ~~~~~~~~~adi~v~p--s~---~e~~~~~~~Ea~a~G~PvI~~~~~ 275 (377)
+++.++++.||++++. .. ..-+....+..|.-|.-+|-+..+
T Consensus 212 ~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG 258 (351)
T 3jtm_A 212 EDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARG 258 (351)
T ss_dssp SCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCG
T ss_pred CCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCc
Confidence 4688899999998873 22 223456778888777766644433
No 239
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=34.85 E-value=1e+02 Score=20.54 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=55.7
Q ss_pred eEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCC-cccchHHHHHHh--cCCCeEEe-cCC
Q 017114 203 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS--SGIPVVGV-RAG 275 (377)
Q Consensus 203 ~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a--~G~PvI~~-~~~ 275 (377)
++.++.+.+. .+.+.......+......-+..+....+.. .|++++-... +.-|..+++.+. ...|+|.. ...
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 84 (123)
T 1xhf_A 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRD 84 (123)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCC
T ss_pred eEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCC
Confidence 4556665432 334444444333332222222444444443 5777764332 223445555543 46777644 333
Q ss_pred CC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 276 GI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 276 ~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
.. .+.+ +.|..+++..|.+.+++..++..++
T Consensus 85 ~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~ 118 (123)
T 1xhf_A 85 NEVDKILGL---EIGADDYITKPFNPRELTIRARNLL 118 (123)
T ss_dssp SHHHHHHHH---HHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ChHHHHHHH---hcCcceEEeCCCCHHHHHHHHHHHH
Confidence 22 2223 4466789999999999999997765
No 240
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=34.58 E-value=63 Score=26.94 Aligned_cols=133 Identities=14% Similarity=0.181 Sum_probs=76.4
Q ss_pred HHHHHHHHhcCCeeEec--ChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchH---HHHHhhCCCCCCCeEEEee
Q 017114 107 WLVIKFLHRAADLTLVP--SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVG 181 (377)
Q Consensus 107 ~~~~~~~~~~~d~ii~~--s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G 181 (377)
.-..+.+-+.+|.++.= ++...+.+.++. ..+-|| |+-|-+..+|...-.+ .+... +.-+...|.|+|
T Consensus 89 ~DTarvls~~~D~iviR~~~~~~~~~la~~~----~~vPVI-Nag~G~~~HPtQaLaDl~Ti~e~~--g~l~gl~va~vG 161 (310)
T 3csu_A 89 ADTISVISTYVDAIVMRHPQEGAARLATEFS----GNVPVL-NAGDGSNQHPTQTLLDLFTIQETQ--GRLDNLHVAMVG 161 (310)
T ss_dssp HHHHHHHTTTCSEEEEEESSTTHHHHHHHHC----TTCCEE-EEEETTSCCHHHHHHHHHHHHHHH--SCSSSCEEEEES
T ss_pred HHHHHHHHHhCCEEEEECCChhHHHHHHHhc----CCCCEE-cCccCCCCCchHHHHHHHHHHHHh--CCcCCcEEEEEC
Confidence 34556677788987763 344455555443 023355 4554344444321111 12222 223567899999
Q ss_pred cccccccHHHHHHHHHhCCCceEEEEecCcc--HHHHHHhhcCCC--EEEccccCchhHHHHHhcCCEEEeccC
Q 017114 182 RLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSE 251 (377)
Q Consensus 182 ~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~--~~~l~~~~~~~~--v~~~g~~~~~~~~~~~~~adi~v~ps~ 251 (377)
-.....-...++.++..++++++.++|...+ .+.+.+.+++.+ +.+. .++.+.+..||++.....
T Consensus 162 D~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~-----~d~~eav~~aDvvyt~~~ 230 (310)
T 3csu_A 162 DLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLH-----SSIEEVMAEVDILYMTRV 230 (310)
T ss_dssp CTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEC-----SCGGGTTTTCSEEEECC-
T ss_pred CCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEE-----cCHHHHhcCCCEEEECCc
Confidence 7654455788899999998999999994322 122333333222 2222 466778899999987655
No 241
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=33.47 E-value=66 Score=27.02 Aligned_cols=92 Identities=21% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCeEEEeecccccccHHHHHHHHHhCCCceEEEEecC---ccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEecc
Q 017114 174 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDG---PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 250 (377)
Q Consensus 174 ~~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g---~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps 250 (377)
...+..+|.-.... ..++++ .++++++-+.+. ...+.+.+..++.++.-..+-+.+++..- ...|+++..+
T Consensus 2 ~~rvgiiG~G~~~~---~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~vD~V~I~t 75 (337)
T 3ip3_A 2 SLKICVIGSSGHFR---YALEGL--DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEK-EKPDILVINT 75 (337)
T ss_dssp CEEEEEECSSSCHH---HHHTTC--CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHH-HCCSEEEECS
T ss_pred ceEEEEEccchhHH---HHHHhc--CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcC-CCCCEEEEeC
Q ss_pred CCcccchHHHHHHhcCCCeEE
Q 017114 251 ESETLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 251 ~~e~~~~~~~Ea~a~G~PvI~ 271 (377)
......-.+.+|+..|++|++
T Consensus 76 p~~~H~~~~~~al~aGkhVl~ 96 (337)
T 3ip3_A 76 VFSLNGKILLEALERKIHAFV 96 (337)
T ss_dssp SHHHHHHHHHHHHHTTCEEEE
T ss_pred CcchHHHHHHHHHHCCCcEEE
No 242
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=32.99 E-value=2.2e+02 Score=24.37 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=47.8
Q ss_pred hhHHHHHhc--CCEEEeccC-CcccchHHHHHHh---cCCCeEE-ecCCCCC---ccccccCCCCeeEEeCCCCHHHHHH
Q 017114 234 EELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVG-VRAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLS 303 (377)
Q Consensus 234 ~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~-~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~l~~ 303 (377)
++....+.. .|++++-.. .+.-|..+++.+. ..+|||. |..+... +.+ +.|-.+++..|.+.+++..
T Consensus 34 ~eal~~l~~~~~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvlT~~~~~~~~~~a~---~~Ga~dyl~KP~~~~~L~~ 110 (387)
T 1ny5_A 34 KEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAM---KMGAYDFLTKPCMLEEIEL 110 (387)
T ss_dssp HHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEEETTCHHHHHHHH---TTTCCEEEEESCCHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHH---hcCceEEecCCCCHHHHHH
Confidence 555555543 577776433 2334556666553 3567764 3343322 333 5677889999999999999
Q ss_pred HHHHHhhCH
Q 017114 304 KLEPLLYNQ 312 (377)
Q Consensus 304 ~i~~~~~~~ 312 (377)
++..++...
T Consensus 111 ~i~~~l~~~ 119 (387)
T 1ny5_A 111 TINKAIEHR 119 (387)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987643
No 243
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=32.76 E-value=1.2e+02 Score=23.26 Aligned_cols=107 Identities=15% Similarity=0.180 Sum_probs=56.7
Q ss_pred ceEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccCC-cccchHHHHHHh--cCCCeEEecC-
Q 017114 202 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS--SGIPVVGVRA- 274 (377)
Q Consensus 202 ~~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a--~G~PvI~~~~- 274 (377)
.++.++.+.+. .+.+.......+......-+.++....+. ..|++++-... +.-|..+++.+. ..+|+|.-..
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~ 84 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTAR 84 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCC
Confidence 35556654432 23334433333332222222344444443 35777764432 233455555543 4678775422
Q ss_pred CC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhC
Q 017114 275 GG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 311 (377)
Q Consensus 275 ~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 311 (377)
.. ..+.+ +.+..+++..|.+++++.++|..++..
T Consensus 85 ~~~~~~~~~~---~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 85 DSEIDKVVGL---ELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp HHHHHHHHHH---HHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHH---HcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 21 12223 346667888899999999999988753
No 244
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=32.44 E-value=1.1e+02 Score=24.19 Aligned_cols=33 Identities=24% Similarity=0.189 Sum_probs=24.8
Q ss_pred CCCEEEeCCCchhHHHHHHHHHhhCCCEEEEecc
Q 017114 55 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 88 (377)
Q Consensus 55 ~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 88 (377)
.||+|++.++..-. .++.-|...|+|+|-.+..
T Consensus 157 ~Pdll~v~Dp~~e~-~ai~EA~~l~IPvIaivDT 189 (231)
T 3bbn_B 157 LPDIVIIVDQQEEY-TALRECITLGIPTICLIDT 189 (231)
T ss_dssp CCSEEEESCTTTTH-HHHHHHHTTTCCEEECCCS
T ss_pred CCCEEEEeCCcccc-HHHHHHHHhCCCEEEEecC
Confidence 59999999875443 3456788899999876654
No 245
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=31.20 E-value=45 Score=25.49 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=26.9
Q ss_pred HHHHHhcCCEEEeccCCcccch--HHHHHHh------cCCCeEEecCCC
Q 017114 236 LSQAYASGDVFVMPSESETLGL--VVLEAMS------SGIPVVGVRAGG 276 (377)
Q Consensus 236 ~~~~~~~adi~v~ps~~e~~~~--~~~Ea~a------~G~PvI~~~~~~ 276 (377)
-..+...||.+|.-. .|+|+ =++|++. .++||+..+..+
T Consensus 91 k~~~~~~sda~IvlP--GG~GTl~El~e~lt~~q~g~~~kPvvll~~~g 137 (191)
T 1t35_A 91 KAKMSELADGFISMP--GGFGTYEELFEVLCWAQIGIHQKPIGLYNVNG 137 (191)
T ss_dssp HHHHHHHCSEEEECS--CCHHHHHHHHHHHHTTSCSSCCCCEEEECGGG
T ss_pred HHHHHHHCCEEEEeC--CCccHHHHHHHHHHHHHhCCCCCCEEEecCCc
Confidence 345667789877643 34554 4888885 889999887633
No 246
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=30.80 E-value=1.1e+02 Score=25.08 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=25.1
Q ss_pred hhHHHHHh--cCCEEEeccCCcccchHHHHHHhcCCCeE
Q 017114 234 EELSQAYA--SGDVFVMPSESETLGLVVLEAMSSGIPVV 270 (377)
Q Consensus 234 ~~~~~~~~--~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 270 (377)
.++.++.. ..|+.+.....+...-.+.|++..|++++
T Consensus 54 ~sl~el~~~~~~D~viI~tP~~~~~~~~~ea~~~Gi~~i 92 (288)
T 2nu8_A 54 NTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLI 92 (288)
T ss_dssp SSHHHHHHHHCCCEEEECCCGGGHHHHHHHHHHTTCSEE
T ss_pred CCHHHHhhcCCCCEEEEecCHHHHHHHHHHHHHCCCCEE
Confidence 34445555 68888776666666777777788887753
No 247
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=30.64 E-value=97 Score=25.71 Aligned_cols=70 Identities=17% Similarity=0.071 Sum_probs=0.0
Q ss_pred ceEEEEec-CccHHHHHHhhcCCCEEEccccC-----------------chhHHHHH----------hcCCEEEeccCCc
Q 017114 202 ARIAFIGD-GPYREELEKMFTGMPAVFTGMLL-----------------GEELSQAY----------ASGDVFVMPSESE 253 (377)
Q Consensus 202 ~~l~i~G~-g~~~~~l~~~~~~~~v~~~g~~~-----------------~~~~~~~~----------~~adi~v~ps~~e 253 (377)
+++-|+|. |.........+...++.+.+.++ ..++.+++ ...|+++..+...
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~ 83 (312)
T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH 83 (312)
T ss_dssp CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG
T ss_pred eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch
Q ss_pred ccchHHHHHHhcCCCeEE
Q 017114 254 TLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 254 ~~~~~~~Ea~a~G~PvI~ 271 (377)
...-.+.+|+..|++|++
T Consensus 84 ~H~~~~~~al~aGkhVl~ 101 (312)
T 3o9z_A 84 LHYPQIRMALRLGANALS 101 (312)
T ss_dssp GHHHHHHHHHHTTCEEEE
T ss_pred hhHHHHHHHHHCCCeEEE
No 248
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=30.57 E-value=2.3e+02 Score=23.48 Aligned_cols=56 Identities=11% Similarity=0.264 Sum_probs=35.6
Q ss_pred EEEeecccccccHHHHHHHHHhCCCceEEEEecCccH----HHHHHhhcC--CCEEEccccC
Q 017114 177 IVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYR----EELEKMFTG--MPAVFTGMLL 232 (377)
Q Consensus 177 i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~----~~l~~~~~~--~~v~~~g~~~ 232 (377)
.+..+.....++...+.+.+...|+...+++.+.... +.+++.... ..|.+.|+=.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~vP~di~vvg~d~ 242 (350)
T 3h75_A 181 QLVYGEWNRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRKPGTDLLFSGVNS 242 (350)
T ss_dssp EEEECTTCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESC
T ss_pred EEeeCCCcHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCCCCCCeEEEecCC
Confidence 4456677777888888888888888888888754322 233333222 2477777643
No 249
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=30.38 E-value=2.1e+02 Score=22.96 Aligned_cols=43 Identities=12% Similarity=-0.016 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEecc
Q 017114 45 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 88 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 88 (377)
..+.+.+...++|.|++....... ..+...+..++|+|+.-+.
T Consensus 55 ~~~~~~l~~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~ 97 (294)
T 3qk7_A 55 QSLIHLVETRRVDALIVAHTQPED-FRLQYLQKQNFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHTCCSEEEECSCCSSC-HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHcCCCCEEEEeCCCCCh-HHHHHHHhCCCCEEEECCC
Confidence 456777778899988876542221 2233445678999876544
No 250
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=30.16 E-value=1.4e+02 Score=20.88 Aligned_cols=107 Identities=19% Similarity=0.279 Sum_probs=62.8
Q ss_pred CceEEEEecCc-cHHHHHHhhcC-CCEEEcc-ccCchhHHHHHhc--CCEEEeccC-CcccchHHHHHHh---cCCCeEE
Q 017114 201 EARIAFIGDGP-YREELEKMFTG-MPAVFTG-MLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVG 271 (377)
Q Consensus 201 ~~~l~i~G~g~-~~~~l~~~~~~-~~v~~~g-~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~ 271 (377)
..+++++.+.+ ..+.+...... .+....+ .-+.++....+.. .|++++-.. .+.-|..+++.+. .++|||.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILI 84 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEE
Confidence 35666776554 34455555554 4554442 2223555555544 577776443 2333555565553 3678775
Q ss_pred ec-CCC---CCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 272 VR-AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 272 ~~-~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.. ... ..+.+ ..+-.+++..|.+.+++.++|..++.
T Consensus 85 ls~~~~~~~~~~~~---~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 85 FTMHQGSAFALKAF---EAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp EESCCSHHHHHHHH---HTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHH---HCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 43 322 12233 45677899999999999999998876
No 251
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=30.05 E-value=1.4e+02 Score=22.95 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=42.8
Q ss_pred cCCEEEeccC-CcccchHHHHHHh----cCCCeEEe-cCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 242 SGDVFVMPSE-SETLGLVVLEAMS----SGIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 242 ~adi~v~ps~-~e~~~~~~~Ea~a----~G~PvI~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
..|++++-.. .+.-|..+++.+. ..+|||.- ..............|-.+++..|.+++++..+|..++.
T Consensus 54 ~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 128 (225)
T 3klo_A 54 SIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQ 128 (225)
T ss_dssp GCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHC
Confidence 3688776433 2333555665553 36787643 33222221111145678999999999999999999876
No 252
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=29.78 E-value=97 Score=22.89 Aligned_cols=65 Identities=12% Similarity=0.187 Sum_probs=39.4
Q ss_pred cCC-EEEeccCCcccchHHHHHH-hcCCCeEEecCCC--CCc------cccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 242 SGD-VFVMPSESETLGLVVLEAM-SSGIPVVGVRAGG--IPD------IIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 242 ~ad-i~v~ps~~e~~~~~~~Ea~-a~G~PvI~~~~~~--~~~------~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.+| +++.|.-+.-.+..+.+|+ +.++|+|=.-.+. .+| ++ .+.-.|.++-. -.+...-+++.+++
T Consensus 83 ~~dgIIINpgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRh~S~~---s~~a~GvI~G~-G~~gY~lAl~~l~~ 157 (167)
T 3kip_A 83 GVGFVVINAGAYTHTSVGIRDALLGTAIPFIEVHITNVHQREPFRHQSYL---SDKAVAVICGL-GVYGYTAAIEYALN 157 (167)
T ss_dssp TCCEEEEECGGGGGTCHHHHHHHHHTTCCEEEEESSCGGGSCGGGGCCSS---GGGSSEEEESS-TTHHHHHHHHHHTT
T ss_pred CccEEEEccccceeccHHHHHHHHhcCCCEEEEEcCCccccccchhcccc---cccceEEEEeC-ChhhHHHHHHHHHH
Confidence 345 4666776777788999988 5689998443322 122 22 22234555543 56777777776654
No 253
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=29.76 E-value=29 Score=27.78 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=24.3
Q ss_pred hhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCC
Q 017114 234 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 276 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~ 276 (377)
+++.+++ .+|++|-.+..+.. ...++ +..|+|+|+...|-
T Consensus 47 ~dl~~l~-~~DVvIDft~p~a~-~~~~~-l~~g~~vVigTTG~ 86 (243)
T 3qy9_A 47 QHIADVK-GADVAIDFSNPNLL-FPLLD-EDFHLPLVVATTGE 86 (243)
T ss_dssp SCTTTCT-TCSEEEECSCHHHH-HHHHT-SCCCCCEEECCCSS
T ss_pred CCHHHHh-CCCEEEEeCChHHH-HHHHH-HhcCCceEeCCCCC
Confidence 4444555 89998854432222 12334 88999999765553
No 254
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=29.62 E-value=1.1e+02 Score=25.52 Aligned_cols=91 Identities=11% Similarity=-0.095 Sum_probs=49.9
Q ss_pred CeEEEeecccccccHHHHHHHHHhCCCceEEEEecCccHHHHHHhhcCC-CEEEccccCchhHHHHH--------hcCCE
Q 017114 175 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM-PAVFTGMLLGEELSQAY--------ASGDV 245 (377)
Q Consensus 175 ~~i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~~~~l~~~~~~~-~v~~~g~~~~~~~~~~~--------~~adi 245 (377)
..+..+|.-+. --...++++... +.+++-+.+..... ....... .+.+... .+++.+++ ...|+
T Consensus 4 irvgiIG~gG~--i~~~h~~~l~~~-~~~lvav~d~~~~~--~~~~~~~~~~~~~~~--~~~ll~~~~~l~~~~~~~vD~ 76 (318)
T 3oa2_A 4 KNFALIGAAGY--IAPRHMRAIKDT-GNCLVSAYDINDSV--GIIDSISPQSEFFTE--FEFFLDHASNLKRDSATALDY 76 (318)
T ss_dssp CEEEEETTTSS--SHHHHHHHHHHT-TCEEEEEECSSCCC--GGGGGTCTTCEEESS--HHHHHHHHHHHTTSTTTSCCE
T ss_pred eEEEEECCCcH--HHHHHHHHHHhC-CCEEEEEEcCCHHH--HHHHhhCCCCcEECC--HHHHHHhhhhhhhccCCCCcE
Confidence 45667664111 113566677666 66665555322111 1122221 3333322 24554321 45788
Q ss_pred EEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 246 FVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 246 ~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
++..+......-.+.+|+..|++|++-
T Consensus 77 V~I~tP~~~H~~~~~~al~aGkhVl~E 103 (318)
T 3oa2_A 77 VSICSPNYLHYPHIAAGLRLGCDVICE 103 (318)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred EEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence 888776655666788999999999964
No 255
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=29.58 E-value=91 Score=27.86 Aligned_cols=98 Identities=9% Similarity=-0.092 Sum_probs=56.7
Q ss_pred CCCeEEEeecccc-cccHHHHHHHHHhC-CCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEe
Q 017114 173 DKPLIVHVGRLGV-EKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVM 248 (377)
Q Consensus 173 ~~~~i~~~G~~~~-~k~~~~l~~a~~~l-~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ 248 (377)
++..+..+|--.. ...-...++++... ++++++-+.+. ..+..++.++..++. +.....++.++++ ..|+++.
T Consensus 38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~-~~~~a~~~a~~~g~~--~~~~~~d~~ell~~~~vD~V~I 114 (479)
T 2nvw_A 38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNP-TLKSSLQTIEQLQLK--HATGFDSLESFAQYKDIDMIVV 114 (479)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECS-CHHHHHHHHHHTTCT--TCEEESCHHHHHHCTTCSEEEE
T ss_pred CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeC-CHHHHHHHHHHcCCC--cceeeCCHHHHhcCCCCCEEEE
Confidence 3466888875210 11113456777777 78887655542 334444444433321 0001245666775 5899888
Q ss_pred ccCCcccchHHHHHHhcC------CCeEEec
Q 017114 249 PSESETLGLVVLEAMSSG------IPVVGVR 273 (377)
Q Consensus 249 ps~~e~~~~~~~Ea~a~G------~PvI~~~ 273 (377)
.+......-.+.+|+..| ++|++-.
T Consensus 115 ~tp~~~H~~~~~~al~aG~~~~~~khVl~EK 145 (479)
T 2nvw_A 115 SVKVPEHYEVVKNILEHSSQNLNLRYLYVEW 145 (479)
T ss_dssp CSCHHHHHHHHHHHHHHSSSCSSCCEEEEES
T ss_pred cCCcHHHHHHHHHHHHCCCCcCCceeEEEeC
Confidence 776444455677899999 9999753
No 256
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=29.54 E-value=83 Score=24.55 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=13.8
Q ss_pred chHHHHHHhcCCCeEEe
Q 017114 256 GLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 256 ~~~~~Ea~a~G~PvI~~ 272 (377)
..+++.|++.|+|||..
T Consensus 58 t~K~~~a~~~g~~IV~~ 74 (229)
T 1l0b_A 58 TLKYFLGIAGGKWIVSY 74 (229)
T ss_dssp CHHHHHHHHTTCEEEET
T ss_pred cHHHHHHHHCCCcEecH
Confidence 56888888999988864
No 257
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=29.49 E-value=43 Score=24.63 Aligned_cols=36 Identities=22% Similarity=0.107 Sum_probs=24.0
Q ss_pred HHHhcCCEEEeccC-CcccchHHHH---HHhcCCCeEEec
Q 017114 238 QAYASGDVFVMPSE-SETLGLVVLE---AMSSGIPVVGVR 273 (377)
Q Consensus 238 ~~~~~adi~v~ps~-~e~~~~~~~E---a~a~G~PvI~~~ 273 (377)
..+..||++|.-.. .+.=+.+.+| |.|.|+||++..
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A~gkPVv~~~ 113 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVI 113 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHhCCEEEEEcCCCCCCccHHHHHHHHHHCCCeEEEEE
Confidence 45799999876532 1222444444 789999999764
No 258
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=29.14 E-value=1.8e+02 Score=23.91 Aligned_cols=80 Identities=14% Similarity=0.204 Sum_probs=42.1
Q ss_pred CCceEEEEecCccHHH-HHHhhcCCC---E--EEc-cccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 200 PEARIAFIGDGPYREE-LEKMFTGMP---A--VFT-GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 200 ~~~~l~i~G~g~~~~~-l~~~~~~~~---v--~~~-g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
.+-+++++|.....+. +.+.+...+ | .++ |.+++. ...-+..=|++++.... .-...+.||..+|+|+|+-
T Consensus 70 ~~~~ILfVgTk~~aq~~V~k~A~~~g~~yv~~RWlgG~LTN~-~t~~f~~PdlliV~Dp~-~e~~AI~EA~~lgIPvIal 147 (295)
T 2zkq_b 70 NPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQ-IQAAFREPRLLVVTDPR-ADHQPLTEASYVNLPTIAL 147 (295)
T ss_dssp CGGGEEEEECSHHHHHHHHHHHHHHCCEEEESSCCCC-CCCT-TCSSCCCCSEEEESCTT-TTHHHHHHHHHHTCCEEEE
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhCCceecceEecccccCc-ccccccCCCeEEEeCCC-cchhHHHHHHHhCCCEEEE
Confidence 3567888887654433 333332222 1 122 333322 11224556776654321 1246799999999999976
Q ss_pred -cCCCCCccc
Q 017114 273 -RAGGIPDII 281 (377)
Q Consensus 273 -~~~~~~~~~ 281 (377)
|....++.+
T Consensus 148 vDTn~dp~~V 157 (295)
T 2zkq_b 148 CNTDSPLRYV 157 (295)
T ss_dssp ECTTCCCTTC
T ss_pred ecCCCCcccC
Confidence 444444444
No 259
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=28.97 E-value=49 Score=25.92 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=22.6
Q ss_pred hcCCEEEeccCCcccchHHHHHHhcCCCeEEec
Q 017114 241 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 241 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
..+.-+|.+.. .-..+++.|++.|+|||..+
T Consensus 48 ~~~THLI~~~~--~rT~K~l~A~~~g~~IVs~~ 78 (219)
T 3sqd_A 48 QKCTHLIASKV--TRTVKFLTAISVVKHIVTPE 78 (219)
T ss_dssp GGCSEEECSSC--CCCHHHHHHTTTCSEEECHH
T ss_pred CCceEEEECCC--CCCHHHHHHHHcCCCEecHH
Confidence 56777777642 12358999999999999753
No 260
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=28.78 E-value=30 Score=27.29 Aligned_cols=100 Identities=19% Similarity=0.249 Sum_probs=56.6
Q ss_pred EEEeecccccccHHHHHHHHHhCCCceEEEEecCcc--HHHHHHhhcCCCEEEccccCchhHHHHH----h--cCCEEEe
Q 017114 177 IVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAY----A--SGDVFVM 248 (377)
Q Consensus 177 i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~--~~~l~~~~~~~~v~~~g~~~~~~~~~~~----~--~adi~v~ 248 (377)
|+=.|+++...-++++++-...-+++.+.++|+|.- .+... +....+ . .-|++++
T Consensus 8 iiKlGNigts~~idl~LDErAdRedI~vrv~gsGaKm~pe~~~-----------------~~~~~~~~~~~~~~pDfvI~ 70 (283)
T 1qv9_A 8 FIKCGNLGTSMMMDMLLDERADREDVEFRVVGTSVKMDPECVE-----------------AAVEMALDIAEDFEPDFIVY 70 (283)
T ss_dssp EEECSCCHHHHHTTGGGSTTSCCSSEEEEEEECTTCCSHHHHH-----------------HHHHHHHHHHHHHCCSEEEE
T ss_pred EEEecccchHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHH-----------------HHHHHhhhhhhhcCCCEEEE
Confidence 444566655444454444333336889999998752 12211 122222 1 4577766
Q ss_pred ccC--CcccchHHHHHH-hcCCCeEE-ecCCCC--CccccccCCCCeeEEeCCC
Q 017114 249 PSE--SETLGLVVLEAM-SSGIPVVG-VRAGGI--PDIIPEDQDGKIGYLFNPG 296 (377)
Q Consensus 249 ps~--~e~~~~~~~Ea~-a~G~PvI~-~~~~~~--~~~~~~~~~~~~g~~~~~~ 296 (377)
.|- .-+.|.+.-|.+ +.|+|+|. +|.++. .+-+ ++.+.|+++-..
T Consensus 71 isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~kd~l---~~~g~GYIivk~ 121 (283)
T 1qv9_A 71 GGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLKVKDEM---EEQGLGYILVKP 121 (283)
T ss_dssp ECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGGGHHHH---HHTTCEEEEETT
T ss_pred ECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchhhHHHH---HhcCCcEEEEec
Confidence 554 445677888988 68999864 555543 3334 556677766543
No 261
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=28.78 E-value=55 Score=21.58 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=29.1
Q ss_pred eCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHh
Q 017114 293 FNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTIRNEQYNAAIWFWRK 352 (377)
Q Consensus 293 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~~~ly~~~~~~~~~ 352 (377)
++|.+...++..|.+..+ .+..+++.-.-.+.. . ||+.-...=.++.|+++.+...+
T Consensus 6 ~dpeElr~Fa~~L~~F~d--~Lq~~~~~L~~~f~~L~-sWqDqkr~kFee~fe~l~s~l~~ 63 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKE--LLREEVNSLSNHFHNLE-SWRDARRDKFSEVLDNLKSTFNE 63 (94)
T ss_dssp CCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCC-SCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhccc-hHhhHHHHHHHHHHHHHHHHHHH
Confidence 445556667777776643 333333333222222 3 67654443334677777655543
No 262
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=27.97 E-value=2.3e+02 Score=22.58 Aligned_cols=43 Identities=9% Similarity=-0.109 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCEEEeCCCchhHHHHHHHHHhhCCCEEEEecc
Q 017114 45 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 88 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 88 (377)
..+.+.+...++|.|++....... ..+...+..++|+|+.-..
T Consensus 59 ~~~~~~~~~~~vdgiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~ 101 (292)
T 3k4h_A 59 NGVVKMVQGRQIGGIILLYSREND-RIIQYLHEQNFPFVLIGKP 101 (292)
T ss_dssp HHHHHHHHTTCCCEEEESCCBTTC-HHHHHHHHTTCCEEEESCC
T ss_pred HHHHHHHHcCCCCEEEEeCCCCCh-HHHHHHHHCCCCEEEECCC
Confidence 445666777899988876543222 2233445678998875443
No 263
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=27.84 E-value=1e+02 Score=23.08 Aligned_cols=66 Identities=17% Similarity=0.259 Sum_probs=41.3
Q ss_pred cHHHHHHHHHhCCCceEE-EEecCccHHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcC
Q 017114 188 SLDFLKRVMDRLPEARIA-FIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSG 266 (377)
Q Consensus 188 ~~~~l~~a~~~l~~~~l~-i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G 266 (377)
-++.+...-+..|+.++. |+|.. .+..+ ..| .+..+++..+.++++|...+-.++.+-+.++.|
T Consensus 85 T~dTl~~l~~~~p~~~~~~iiG~D----~l~~l--------~~W---~~~~~l~~~~~~vv~~r~~~iSST~IR~~i~~g 149 (177)
T 3h05_A 85 TYALLEKIQEIYPTADITFVIGPD----NFFKF--------AKF---YKAEEITERWTVMACPEKVKIRSTDIRNALIEG 149 (177)
T ss_dssp HHHHHHHHHHHSTTSEEEEEECHH----HHHTG--------GGS---TTHHHHHHHSEEEECCCSSCCCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhcCCCeEEEEecc----hhhhc--------ccc---hhHHHHHHhCCEEEEcCCCCCcHHHHHHHHHcC
Confidence 355555555567888864 45632 12221 112 245667788999998865566677788888888
Q ss_pred CC
Q 017114 267 IP 268 (377)
Q Consensus 267 ~P 268 (377)
.+
T Consensus 150 ~~ 151 (177)
T 3h05_A 150 KD 151 (177)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 264
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=27.81 E-value=2.2e+02 Score=22.39 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=39.5
Q ss_pred CCEEEeccC-CcccchHHHHHH---hcCCCeEEecCCCC----CccccccCCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 243 GDVFVMPSE-SETLGLVVLEAM---SSGIPVVGVRAGGI----PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 243 adi~v~ps~-~e~~~~~~~Ea~---a~G~PvI~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
.|++++-.. .+.-|..+++.+ ...+|||....... .+.+ +.|-.+++..|.+.+++.+++..++.
T Consensus 174 ~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~~~~~~~~~~~---~~G~~~~l~KP~~~~~L~~~l~~~~~ 246 (254)
T 2ayx_A 174 IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCL---ESGMDSCLSKPVTLDVIKQTLTLYAE 246 (254)
T ss_dssp CSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHH---HCCCEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHH---HcCCceEEECCCCHHHHHHHHHHHHH
Confidence 466665322 122244444444 34688875433222 2233 45778899999999999999988764
No 265
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=27.56 E-value=66 Score=25.04 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=17.8
Q ss_pred HHHHHHHHhcCCCEEEeCCCch
Q 017114 45 PRIISEVARFKPDIIHASSPGI 66 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~ 66 (377)
..+.+.+++.+||+|++.++..
T Consensus 72 ~~~~~~l~~~~~Dliv~a~y~~ 93 (212)
T 3av3_A 72 SEILRELKGRQIDWIALAGYMR 93 (212)
T ss_dssp HHHHHHHHHTTCCEEEESSCCS
T ss_pred HHHHHHHHhcCCCEEEEchhhh
Confidence 4678889999999999987543
No 266
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=27.02 E-value=2.4e+02 Score=23.63 Aligned_cols=127 Identities=11% Similarity=0.010 Sum_probs=71.9
Q ss_pred HHHHHHHhcCCeeEe--cChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchH---HHHHhhCCCCCCCeEEEeec
Q 017114 108 LVIKFLHRAADLTLV--PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVGR 182 (377)
Q Consensus 108 ~~~~~~~~~~d~ii~--~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G~ 182 (377)
-..+.+-+.+|.++. ..+...+.+.++.. +-||. +-+ +...|...-.+ .+..+ +.-+...|.|+|-
T Consensus 95 DTarvLs~~~D~iviR~~~~~~~~~lA~~~~-----vPVIN-ag~-~~~HPtQaLaDl~Ti~e~~--g~l~glkva~vGD 165 (323)
T 3gd5_A 95 DTARVLGRYVDGLAIRTFAQTELEEYAHYAG-----IPVIN-ALT-DHEHPCQVVADLLTIRENF--GRLAGLKLAYVGD 165 (323)
T ss_dssp HHHHHHTTTCSEEEEECSSHHHHHHHHHHHC-----SCEEE-EEC-SSCCHHHHHHHHHHHHHHH--SCCTTCEEEEESC
T ss_pred HHHHHHHHhCCEEEEecCChhHHHHHHHhCC-----CCEEe-CCC-CCCCcHHHHHHHHHHHHHh--CCCCCCEEEEECC
Confidence 455667778998884 44455555655432 33554 445 44444321111 12222 2336788999998
Q ss_pred ccccccHHHHHHHHHhCCCceEEEEecCc---cHH---HHHHhhcC--CCEEEccccCchhHHHHHhcCCEEEeccC
Q 017114 183 LGVEKSLDFLKRVMDRLPEARIAFIGDGP---YRE---ELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSE 251 (377)
Q Consensus 183 ~~~~k~~~~l~~a~~~l~~~~l~i~G~g~---~~~---~l~~~~~~--~~v~~~g~~~~~~~~~~~~~adi~v~ps~ 251 (377)
. ..-...++.++..+ ++++.++|... ..+ .+++.++. ..+.+. .++.+.+..||++....+
T Consensus 166 ~--~rva~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~-----~d~~eav~~aDvvyt~~w 234 (323)
T 3gd5_A 166 G--NNVAHSLLLGCAKV-GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQIL-----RDPFEAARGAHILYTDVW 234 (323)
T ss_dssp C--CHHHHHHHHHHHHH-TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEE-----SCHHHHHTTCSEEEECCC
T ss_pred C--CcHHHHHHHHHHHc-CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEE-----CCHHHHhcCCCEEEEece
Confidence 7 33356677777776 78999998432 222 22222221 123322 567788999999887654
No 267
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=27.00 E-value=1.5e+02 Score=20.02 Aligned_cols=106 Identities=11% Similarity=0.071 Sum_probs=56.2
Q ss_pred ceEEEEecCc-cHHHHHHhhcCCC--EEEccccCchhHHHHHhc-CCEEEeccC-CcccchHHHHHHh---cCCCeEEec
Q 017114 202 ARIAFIGDGP-YREELEKMFTGMP--AVFTGMLLGEELSQAYAS-GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVR 273 (377)
Q Consensus 202 ~~l~i~G~g~-~~~~l~~~~~~~~--v~~~g~~~~~~~~~~~~~-adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~~~ 273 (377)
.+++|+.+.+ ..+.+........ +..... .++....+.. .|++++-.. .+.-|..+++.+. ..+|+|...
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~--~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 81 (135)
T 3eqz_A 4 NRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQH--PRAFLTLSLNKQDIIILDLMMPDMDGIEVIRHLAEHKSPASLILIS 81 (135)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTCSCEEEESC--HHHHTTSCCCTTEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhhcceeeeecC--HHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEE
Confidence 4566666543 2344444444332 222221 1333333222 577776543 2334555665553 356776543
Q ss_pred CCCC------Cc---cccccCCCCeeEEeCCCCHHHHHHHHHHHhhCH
Q 017114 274 AGGI------PD---IIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 312 (377)
Q Consensus 274 ~~~~------~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 312 (377)
.... .. .. ..+-.+++..|.+.+++.+++.++....
T Consensus 82 ~~~~~~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 82 GYDSGVLHSAETLALSC---GLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp SSCHHHHHHHHHHHHHT---TCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred eccchhHHHHHHHHHHc---CCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 2221 11 22 3344688999999999999999988743
No 268
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=26.79 E-value=1.1e+02 Score=20.61 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=41.8
Q ss_pred hHHHHHH-hcCCCeEEecCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH--hcCHHH
Q 017114 257 LVVLEAM-SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME--KYDWRA 333 (377)
Q Consensus 257 ~~~~Ea~-a~G~PvI~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~--~~s~~~ 333 (377)
..+++.. ..|-||+.+..|... .++++..+.+.+.+++ .++.++...+.+.+.-.+..+ ..+++.
T Consensus 21 ~~ll~~v~~~~epViITr~G~~~-----------aVl~s~e~ye~l~etl-~LL~~~~~~~~L~~a~~~~~~G~~~s~ee 88 (108)
T 3g5o_A 21 NEFVDAVSSTQDQITITKNGAPA-----------AVLVGADEWESLQETL-YWLAQPGIRESIAEADADIASGRTYGEDE 88 (108)
T ss_dssp HHHHHHHHTSSCEEEEEETTEEE-----------EEEEEHHHHHHHHHHH-HHHTSTTHHHHHHHHHHHHHHTCEECHHH
T ss_pred HHHHHHHHhhCCcEEEEECCCCc-----------EEEecHHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHcCCCcCHHH
Confidence 3455555 478999988655322 2355555666666665 356677777777665555443 267766
Q ss_pred HHHHH
Q 017114 334 ATRTI 338 (377)
Q Consensus 334 ~~~~~ 338 (377)
+.+++
T Consensus 89 v~~~l 93 (108)
T 3g5o_A 89 IRAEF 93 (108)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
No 269
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=26.47 E-value=2.8e+02 Score=23.48 Aligned_cols=92 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred CCCeEEEeecccccccHHHHHHHHHhC----CCceEEEEe--cCccHHHHHHhhcCCCEEEccccCchhHHHHHhc--CC
Q 017114 173 DKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIG--DGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GD 244 (377)
Q Consensus 173 ~~~~i~~~G~~~~~k~~~~l~~a~~~l----~~~~l~i~G--~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--ad 244 (377)
+++.+..+|.-.-.+..-..+.++... ++++++=+. +....+.+.+...-.++. .++.++++. .|
T Consensus 24 kkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y-------~d~~ell~~~~iD 96 (393)
T 4fb5_A 24 KPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKAT-------ADWRALIADPEVD 96 (393)
T ss_dssp CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEE-------SCHHHHHHCTTCC
T ss_pred CCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeec-------CCHHHHhcCCCCc
Q ss_pred EEEeccCCcccchHHHHHHhcCCCeEE
Q 017114 245 VFVMPSESETLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 245 i~v~ps~~e~~~~~~~Ea~a~G~PvI~ 271 (377)
+++..+......-.+.+|+..|++|++
T Consensus 97 aV~IatP~~~H~~~a~~al~aGkhVl~ 123 (393)
T 4fb5_A 97 VVSVTTPNQFHAEMAIAALEAGKHVWC 123 (393)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred EEEECCChHHHHHHHHHHHhcCCeEEE
No 270
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=26.43 E-value=92 Score=24.15 Aligned_cols=22 Identities=18% Similarity=0.060 Sum_probs=17.6
Q ss_pred HHHHHHHHhcCCCEEEeCCCch
Q 017114 45 PRIISEVARFKPDIIHASSPGI 66 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~ 66 (377)
..+.+.+++.+||+|++.++..
T Consensus 69 ~~~~~~l~~~~~Dliv~a~y~~ 90 (209)
T 1meo_A 69 SAIDLVLEEFSIDIVCLAGFMR 90 (209)
T ss_dssp HHHHHHHHHTTCCEEEEESCCS
T ss_pred HHHHHHHHhcCCCEEEEcchhh
Confidence 4577889999999999877543
No 271
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=26.42 E-value=2.7e+02 Score=22.90 Aligned_cols=34 Identities=6% Similarity=0.133 Sum_probs=22.7
Q ss_pred EEEeecccccccHHHHHHHHHhCCCceEEEEecC
Q 017114 177 IVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDG 210 (377)
Q Consensus 177 i~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g 210 (377)
.++.|......+.+.+.+.++..++...+++++.
T Consensus 218 ~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~nd 251 (338)
T 3dbi_A 218 LIANGKWTPASGAEGVEMLLERGAKFSALVASND 251 (338)
T ss_dssp GEECCCSSHHHHHHHHHHHHHTTCCCSEEEESSH
T ss_pred eEEeCCCCHHHHHHHHHHHHcCCCCCeEEEECCh
Confidence 3455666666777777777766667777777654
No 272
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=26.31 E-value=52 Score=20.60 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=27.9
Q ss_pred hcCCCeEEecCCCCCcccccc-----CCCCeeEEeCCCCHHHHHHHHHHHhh
Q 017114 264 SSGIPVVGVRAGGIPDIIPED-----QDGKIGYLFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 264 a~G~PvI~~~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~l~~~i~~~~~ 310 (377)
-.|+|.++.-.|+...-+++. +++..--+....|++++.+.+++++.
T Consensus 49 dngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflk 100 (112)
T 2lnd_A 49 DNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLK 100 (112)
T ss_dssp TCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHH
T ss_pred hcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHH
Confidence 468888877665543322110 22333334456789999998887764
No 273
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=26.00 E-value=1.5e+02 Score=23.04 Aligned_cols=14 Identities=0% Similarity=0.133 Sum_probs=8.8
Q ss_pred CCCHHHHHHHHHHH
Q 017114 295 PGDLDDCLSKLEPL 308 (377)
Q Consensus 295 ~~~~~~l~~~i~~~ 308 (377)
.++.++|.+.+..+
T Consensus 162 ~dt~~~L~~r~~~~ 175 (212)
T 3av3_A 162 GEPIEALEERIHQV 175 (212)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 34677777776543
No 274
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=25.78 E-value=1.5e+02 Score=20.04 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=22.3
Q ss_pred hhHHHHHhcCCEEEeccCCcccchHHHHHHh--cCCCeEEec
Q 017114 234 EELSQAYASGDVFVMPSESETLGLVVLEAMS--SGIPVVGVR 273 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a--~G~PvI~~~ 273 (377)
.++...+..+|++++.... .+-..=++..+ .|+||.+-+
T Consensus 45 ~~~~~~~~~~DvvLLgPQV-~y~~~~ik~~~~~~~ipV~vI~ 85 (108)
T 3nbm_A 45 GAHYDIMGVYDLIILAPQV-RSYYREMKVDAERLGIQIVATR 85 (108)
T ss_dssp TSCTTTGGGCSEEEECGGG-GGGHHHHHHHHTTTTCEEEECC
T ss_pred HHHHhhccCCCEEEEChHH-HHHHHHHHHHhhhcCCcEEEeC
Confidence 4566677889998874321 12223344433 488887543
No 275
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=25.12 E-value=45 Score=29.01 Aligned_cols=68 Identities=18% Similarity=0.310 Sum_probs=46.0
Q ss_pred cCCEEEeccCCccc------chHHHHHHhcCCCeEEecCCCCCc--cc-cccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 242 SGDVFVMPSESETL------GLVVLEAMSSGIPVVGVRAGGIPD--II-PEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 242 ~adi~v~ps~~e~~------~~~~~Ea~a~G~PvI~~~~~~~~~--~~-~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
--|++++|.+.+-. .+.+.+.+....|+|...-.+..+ +. ...+.|..|++-...+++++++.|.++-
T Consensus 12 ~ddvll~P~~~~~~~~~v~l~t~lt~~l~l~~PIi~a~M~~Vs~~~lA~Ava~aGGlGvi~~~~~~e~~~~~i~~vk 88 (400)
T 3ffs_A 12 FEDILLVPNYSEVLPREVSLETKLTKNVSLKIPLISSAMDTVTEHLMAVGMARLGGIGIIHKNMDMESQVNEVLKVK 88 (400)
T ss_dssp GGGEEECCCCBCSCGGGCCCCEESSSSCEESSSEEECSCTTTCSSHHHHHHHTTTCEEEECSSSCHHHHHHHHHHHH
T ss_pred ceeEEEecCCCccCHHHccCccchhcccCCCCCEEeCCCCCcCcHHHHHHHHHCCCEEEeCCCCCHHHHHHHHHHHH
Confidence 34788888765432 334667788899999886544322 11 1116688898887778999999987763
No 276
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=25.07 E-value=1.8e+02 Score=24.47 Aligned_cols=75 Identities=8% Similarity=0.089 Sum_probs=46.8
Q ss_pred eEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCc
Q 017114 203 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD 279 (377)
Q Consensus 203 ~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~ 279 (377)
++.+++..++ .+.++++..+.++.+......+++.+.++.+|+++..+ ...++-.+++++-. +-+|++...|+..
T Consensus 2 ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~li~~~-~~~i~~~~l~~~~~-Lk~I~~~~~G~d~ 77 (334)
T 2pi1_A 2 NVLFTSVPQEDVPFYQEALKDLSLKIYTTDVSKVPENELKKAELISVFV-YDKLTEELLSKMPR-LKLIHTRSVGFDH 77 (334)
T ss_dssp EEEECSCCTTHHHHHHHHTTTSEEEECSSCGGGSCHHHHHHCSEEEECT-TSCBCHHHHTTCTT-CCEEEESSSCCTT
T ss_pred EEEEEccChhhHHHHHHHhhcCCEEEECCCCcHHHHHHhcCCeEEEEcC-CCCCCHHHHhhCCC-CeEEEECCccccc
Confidence 4555564433 34556665555676654444568889999999988643 34556667776543 7777776555543
No 277
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=24.92 E-value=87 Score=24.44 Aligned_cols=23 Identities=9% Similarity=0.202 Sum_probs=18.6
Q ss_pred hHHHHHHHHhcCCCEEEeCCCch
Q 017114 44 SPRIISEVARFKPDIIHASSPGI 66 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~~ 66 (377)
-..+.+.+++.+||+|++.++..
T Consensus 72 d~~~~~~l~~~~~Dliv~agy~~ 94 (215)
T 3tqr_A 72 ESTLQKTIDHYDPKLIVLAGFMR 94 (215)
T ss_dssp HHHHHHHHHTTCCSEEEESSCCS
T ss_pred HHHHHHHHHhcCCCEEEEccchh
Confidence 35688999999999999987543
No 278
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=24.89 E-value=1.7e+02 Score=23.86 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=48.3
Q ss_pred hhHHHHHhcCCEEEecc-CCcccchHHHHHHhcCCCeEEecCCCCCccccccCCC----CeeEEeCCCCHHHHHHHHHHH
Q 017114 234 EELSQAYASGDVFVMPS-ESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG----KIGYLFNPGDLDDCLSKLEPL 308 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps-~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~l~~~i~~~ 308 (377)
..-..-++.||++|.-. ..|++-.++++.. + +-.+..-...++.....++ +.-+..++.+...+++.|.+.
T Consensus 47 p~d~~~l~~Adlvv~nG~~lE~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~dPHvWldp~~~~~~a~~I~~~ 122 (282)
T 3mfq_A 47 SSDLSKLQKADLVLYHGLHFEGKMVEALEKT--G--VAVSKNFNAKDLNTMDEDGEEIVDPHFWFSIPLYKSAVAVASEE 122 (282)
T ss_dssp HHHHHHHHHCSEEEECCTTSSSSCHHHHHHH--C--EETTTTCCGGGCCEECSSSSCEECCCGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEcCcchHHHHHHHHHhc--C--cchhhccCcccccccccCCCCCCCCCccCCHHHHHHHHHHHHHH
Confidence 34456688899988764 3677777777764 2 1111110000111000011 222445555667777777777
Q ss_pred hh--CHHHHHHHHHHHHHHHH
Q 017114 309 LY--NQELRETMGQAARQEME 327 (377)
Q Consensus 309 ~~--~~~~~~~~~~~~~~~~~ 327 (377)
+. ||+......+|+.++.+
T Consensus 123 L~~~dP~~a~~y~~N~~~~~~ 143 (282)
T 3mfq_A 123 LQKLLPAKAEMIQKNTEKYQA 143 (282)
T ss_dssp HTTTCGGGHHHHHHHHHHHHH
T ss_pred HHHhChhhHHHHHHHHHHHHH
Confidence 65 77766666666665543
No 279
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=24.81 E-value=2e+02 Score=23.56 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=22.0
Q ss_pred hHHHHHhcCCEEEeccC-Cc-ccchHHHHHHhcCCCeEE
Q 017114 235 ELSQAYASGDVFVMPSE-SE-TLGLVVLEAMSSGIPVVG 271 (377)
Q Consensus 235 ~~~~~~~~adi~v~ps~-~e-~~~~~~~Ea~a~G~PvI~ 271 (377)
.-..-++.||++|.-.. .| ++-.++.++ ..+.++|.
T Consensus 44 ~d~~~l~~Adlvv~~G~~lE~~~~~~l~~~-~~~~~~v~ 81 (291)
T 1pq4_A 44 QQLAALSEAEAYVLIGLGFEQPWLEKLKAA-NANMKLID 81 (291)
T ss_dssp HHHHHGGGCSEEEECCTTTTTTTHHHHHHH-CSSSEEEE
T ss_pred HHHHHHHcCCEEEEeCCcchhHHHHHHHhh-CCCCeEEE
Confidence 44567899999987653 56 355566554 33445553
No 280
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=24.69 E-value=1.7e+02 Score=20.09 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=43.0
Q ss_pred hhHHHHHhc--CCEEEeccCC-cccchHHHHHHh---cCCCeEEe-cCCC---CCccccccCCCCeeEEeCCCCHHHHHH
Q 017114 234 EELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLS 303 (377)
Q Consensus 234 ~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~~-~~~~---~~~~~~~~~~~~~g~~~~~~~~~~l~~ 303 (377)
.+....+.. .|++++-... +.-|..+++.+. .+.|+|.. .... ..+.+ ..|..+++..|.+.+++.+
T Consensus 39 ~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~ 115 (141)
T 3cu5_A 39 INAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAI---KFRAIRYVEKPIDPSEIMD 115 (141)
T ss_dssp HHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCSTTTCCC---------CCCEEECSSCCHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCCcHHHHHHHH---hCCccEEEeCCCCHHHHHH
Confidence 444444443 5887764432 233555666553 46777643 3222 23334 5567789999999999999
Q ss_pred HHHHHhh
Q 017114 304 KLEPLLY 310 (377)
Q Consensus 304 ~i~~~~~ 310 (377)
+|..++.
T Consensus 116 ~i~~~~~ 122 (141)
T 3cu5_A 116 ALKQSIQ 122 (141)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 281
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=24.40 E-value=2.7e+02 Score=22.27 Aligned_cols=127 Identities=11% Similarity=0.105 Sum_probs=0.0
Q ss_pred ccccccHHHHHHHHHhC----CCceEEEEecCccHHHHHHhhcCC------CEEEccccCchhHHHHHhcCCEEEeccCC
Q 017114 183 LGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGM------PAVFTGMLLGEELSQAYASGDVFVMPSES 252 (377)
Q Consensus 183 ~~~~k~~~~l~~a~~~l----~~~~l~i~G~g~~~~~l~~~~~~~------~v~~~g~~~~~~~~~~~~~adi~v~ps~~ 252 (377)
++-.|-...+.+|+..+ .+-++.++|.....+..-...... +-.|+|-.--.....-+..=|++++....
T Consensus 82 IdL~kT~~~L~~A~~~i~~~~~~~~iLfVgTk~~aq~~V~~~A~~~g~~yv~~RWlgG~LTN~~~~~f~~PdlliV~Dp~ 161 (253)
T 3bch_A 82 INLKRTWEKLLLAARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPR 161 (253)
T ss_dssp ECHHHHHHHHHHHHHHHHTCSSGGGEEEEECSHHHHHHHHHHHHHHCCEEEESCCCTTTTTCCSCSTTCSCSEEEESCTT
T ss_pred EeHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHhCCeeecceecCCcccCccccccCCCCEEEEECCC
Q ss_pred cccchHHHHHHhcCCCeEEe-cCCCCCccccccCCCCeeEEeCCCCHHHHHHHHHHHhhCHHHHHH
Q 017114 253 ETLGLVVLEAMSSGIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRET 317 (377)
Q Consensus 253 e~~~~~~~Ea~a~G~PvI~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~ 317 (377)
... ..+.||...|+|||+- |....++.+ .-.+-..+|.-.-...+..++.+.-...+
T Consensus 162 ~e~-~AI~EA~~lgIPvIalvDTn~dp~~V-------Dy~IP~Ndds~~SI~Li~~lla~aIl~gr 219 (253)
T 3bch_A 162 ADH-QPLTEASYVNLPTIALCNTDSPLRYV-------DIAIPCNNKGAHSVGLMWWMLAREVLRMR 219 (253)
T ss_dssp TTH-HHHHHHHHTTCCEEEEECTTCCCTTC-------SEEEESCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-hHHHHHHHhCCCEEEEEcCCCCcccC-------ceEeecCCcchhhHHHHHHHHHHHHHHhc
No 282
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=24.38 E-value=97 Score=27.25 Aligned_cols=96 Identities=10% Similarity=-0.046 Sum_probs=55.0
Q ss_pred CCeEEEeecccc-cccHHHHHHHHHhC-CCceEEEEecCccHHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEec
Q 017114 174 KPLIVHVGRLGV-EKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMP 249 (377)
Q Consensus 174 ~~~i~~~G~~~~-~k~~~~l~~a~~~l-~~~~l~i~G~g~~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~p 249 (377)
+..+..+|--.. ...-...++++... ++++++-+.+. ..+..++..+..++. +.....++.+++. ..|+++..
T Consensus 20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~-~~~~~~~~a~~~g~~--~~~~~~~~~~ll~~~~vD~V~i~ 96 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSP-KIETSIATIQRLKLS--NATAFPTLESFASSSTIDMIVIA 96 (438)
T ss_dssp CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECS-SHHHHHHHHHHTTCT--TCEEESSHHHHHHCSSCSEEEEC
T ss_pred CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeC-CHHHHHHHHHHcCCC--cceeeCCHHHHhcCCCCCEEEEe
Confidence 456777775100 11112356666777 78887655543 333444444332221 0001246667776 58998887
Q ss_pred cCCcccchHHHHHHhcC------CCeEEe
Q 017114 250 SESETLGLVVLEAMSSG------IPVVGV 272 (377)
Q Consensus 250 s~~e~~~~~~~Ea~a~G------~PvI~~ 272 (377)
+......-.+.+|+..| ++|++-
T Consensus 97 tp~~~H~~~~~~al~aG~~~~~~khVl~E 125 (438)
T 3btv_A 97 IQVASHYEVVMPLLEFSKNNPNLKYLFVE 125 (438)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTCCEEEEE
T ss_pred CCcHHHHHHHHHHHHCCCCcccceeEEec
Confidence 76444455677899999 999975
No 283
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=24.31 E-value=1.1e+02 Score=23.78 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=18.8
Q ss_pred HHHHHHHHhcCCCEEEeCCCchh
Q 017114 45 PRIISEVARFKPDIIHASSPGIM 67 (377)
Q Consensus 45 ~~~~~~i~~~~pDii~~~~~~~~ 67 (377)
..+.+.+++.+||+|++......
T Consensus 72 ~~~~~~L~~~~~Dlivlagy~~I 94 (215)
T 3kcq_A 72 EHISTVLREHDVDLVCLAGFMSI 94 (215)
T ss_dssp HHHHHHHHHTTCSEEEESSCCSC
T ss_pred HHHHHHHHHhCCCEEEEeCCceE
Confidence 67889999999999999875433
No 284
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=24.11 E-value=55 Score=27.87 Aligned_cols=76 Identities=21% Similarity=0.123 Sum_probs=46.4
Q ss_pred CCCEEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHH--------hcCCCeEEe--cCCCCCccccccCCCCeeE
Q 017114 222 GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM--------SSGIPVVGV--RAGGIPDIIPEDQDGKIGY 291 (377)
Q Consensus 222 ~~~v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~--------a~G~PvI~~--~~~~~~~~~~~~~~~~~g~ 291 (377)
..++...|.+|.+.+.. -...|++|.-+. ..|+..+-++ ..|+|+|-+ |.|..-++. |.+
T Consensus 255 ~~gi~v~GP~paDt~F~-~~~~D~vlaMYH--DQgl~p~K~l~f~~~vnitlGLp~iRtS~dHGta~dia-----gkg-- 324 (349)
T 4aty_A 255 DDGMTVIGPQGADLLLT-NPDIDVFVAMYH--DQGHIPVKLRAGRHSAALSIGAGVLFSSVGHGSGFDIA-----GTL-- 324 (349)
T ss_dssp HC-CCEEEEECHHHHTT-CTTCSEEEESSH--HHHHHHHHHHHTTSEEEEEESSSSEEEECCSCCCTTST-----TTT--
T ss_pred HCCCeEeCCCchhhhhc-cCCCCEEEEccc--ccchHHHHhcccCCcEEEecCCCeeEeCCCCChhhhhc-----cCC--
Confidence 34677889998765542 256788765443 3344444433 578999844 566666665 221
Q ss_pred EeCCCCHHHHHHHHHHHhh
Q 017114 292 LFNPGDLDDCLSKLEPLLY 310 (377)
Q Consensus 292 ~~~~~~~~~l~~~i~~~~~ 310 (377)
--|+.++.++|.-+.+
T Consensus 325 ---~a~~~s~~~Ai~~a~~ 340 (349)
T 4aty_A 325 ---LADPAPLLGAIRLVTT 340 (349)
T ss_dssp ---CCCCHHHHHHHHHHHH
T ss_pred ---CCChHHHHHHHHHHHH
Confidence 2277889999876654
No 285
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=24.02 E-value=1.1e+02 Score=25.55 Aligned_cols=137 Identities=15% Similarity=0.164 Sum_probs=77.3
Q ss_pred HHHHHHHhcCCeeEe--cChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchHHH-HHhhCCCCCCCeEEEeeccc
Q 017114 108 LVIKFLHRAADLTLV--PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMR-WRLSNGEPDKPLIVHVGRLG 184 (377)
Q Consensus 108 ~~~~~~~~~~d~ii~--~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~G~~~ 184 (377)
-..+.+-+.+|.++. ..+...+.+.++. .+-|| |+-|-+..+|...-.+.. -....+.-+...|.|+|-..
T Consensus 92 DTarvls~~~D~iviR~~~~~~~~~la~~~-----~vPVI-Nag~g~~~HPtQ~LaDl~Ti~e~~g~l~gl~va~vGD~~ 165 (308)
T 1ml4_A 92 DTIKTVEQYCDVIVIRHPKEGAARLAAEVA-----EVPVI-NAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLK 165 (308)
T ss_dssp HHHHHHTTTCSEEEEEESSTTHHHHHHHTC-----SSCEE-EEEETTSCCHHHHHHHHHHHHHHSSCSSSEEEEEESCTT
T ss_pred HHHHHHHHhCcEEEEecCChhHHHHHHHhC-----CCCEE-eCccCCccCcHHHHHHHHHHHHHhCCCCCeEEEEeCCCC
Confidence 455667778898776 3344455555442 23355 455433444432111111 01112223567899999764
Q ss_pred ccccHHHHHHHHHhCCCceEEEEecCcc--HHHHHHhhcCCC--EEEccccCchhHHHHHhcCCEEEeccCC-cccc
Q 017114 185 VEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSES-ETLG 256 (377)
Q Consensus 185 ~~k~~~~l~~a~~~l~~~~l~i~G~g~~--~~~l~~~~~~~~--v~~~g~~~~~~~~~~~~~adi~v~ps~~-e~~~ 256 (377)
...-...++.++..+ ++++.++|...+ .+.+.+.+++.+ +.+. .++.+.+..||++...... |.+|
T Consensus 166 ~~rva~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~-----~d~~eav~~aDvvyt~~~q~er~~ 236 (308)
T 1ml4_A 166 YGRTVHSLAEALTFY-DVELYLISPELLRMPRHIVEELREKGMKVVET-----TTLEDVIGKLDVLYVTRIQKERFP 236 (308)
T ss_dssp TCHHHHHHHHHGGGS-CEEEEEECCGGGCCCHHHHHHHHHTTCCEEEE-----SCTHHHHTTCSEEEECCCCGGGSS
T ss_pred cCchHHHHHHHHHHC-CCEEEEECCccccCCHHHHHHHHHcCCeEEEE-----cCHHHHhcCCCEEEECCccccccC
Confidence 445578888888888 899999995322 122333333222 2222 5677889999999876652 3454
No 286
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=23.59 E-value=1.7e+02 Score=24.37 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=24.6
Q ss_pred hHHHHHh---cCCEEEeccCCcccchHHHHHHhcCCCeEEecCC
Q 017114 235 ELSQAYA---SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 275 (377)
Q Consensus 235 ~~~~~~~---~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~ 275 (377)
.+..++. ..|.+|+..........+-++...|+|||+.+..
T Consensus 52 ~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~ 95 (350)
T 3h75_A 52 QARELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSP 95 (350)
T ss_dssp HHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESC
T ss_pred HHHHHHhcCCCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCC
Confidence 3445555 6787776542222233344556789999987654
No 287
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=23.44 E-value=1.6e+02 Score=19.26 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=54.2
Q ss_pred eEEEEecCcc-HHHHHHhhcCCCEEEccccCchhHHHHHh--cCCEEEeccC-CcccchHHHHHHh--cCCCeEEe-cCC
Q 017114 203 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMS--SGIPVVGV-RAG 275 (377)
Q Consensus 203 ~l~i~G~g~~-~~~l~~~~~~~~v~~~g~~~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a--~G~PvI~~-~~~ 275 (377)
++.++.+.+. .+.+.......+......-+..+....+. ..|++++-.. .+.-|..+++.+. ...|+|.. ...
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (121)
T 1zh2_A 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARS 82 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCC
Confidence 3455554432 33444444433333222222233333322 4677776432 2223556666664 35677643 333
Q ss_pred CC---CccccccCCCCeeEEeCCCCHHHHHHHHHHHh
Q 017114 276 GI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 276 ~~---~~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 309 (377)
.. .+.+ +.+..+++..|.+.+++.+++..++
T Consensus 83 ~~~~~~~~~---~~g~~~~l~Kp~~~~~l~~~i~~~~ 116 (121)
T 1zh2_A 83 EESDKIAAL---DAGADDYLSKPFGIGELQARLRVAL 116 (121)
T ss_dssp SHHHHHHHH---HHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHH---hcCCCeEEeCCcCHHHHHHHHHHHH
Confidence 22 2223 4466789999999999999987765
No 288
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=23.42 E-value=1.1e+02 Score=24.28 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=16.2
Q ss_pred ccchHHHHHHhcCCCeEEe
Q 017114 254 TLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 254 ~~~~~~~Ea~a~G~PvI~~ 272 (377)
.-..+.+.|++.|.|||..
T Consensus 78 ~rt~K~~~ala~gipiV~~ 96 (241)
T 2vxb_A 78 SRKVKYLEALAFNIPCVHP 96 (241)
T ss_dssp CCCHHHHHHHHHTCCEECT
T ss_pred CCcHHHHHHHHcCCCEecH
Confidence 4467899999999999975
No 289
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=23.16 E-value=50 Score=27.82 Aligned_cols=77 Identities=14% Similarity=0.227 Sum_probs=49.3
Q ss_pred CCEEEccccCchhH--HHHHhcCCEEEeccCCcc-cchHHHHH-----HhcCCCeEEe--cCCCCCccccccCCCCeeEE
Q 017114 223 MPAVFTGMLLGEEL--SQAYASGDVFVMPSESET-LGLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQDGKIGYL 292 (377)
Q Consensus 223 ~~v~~~g~~~~~~~--~~~~~~adi~v~ps~~e~-~~~~~~Ea-----~a~G~PvI~~--~~~~~~~~~~~~~~~~~g~~ 292 (377)
.++.+.|.+|.+.+ ......+|++|.++..-| .|.|++.. ...|+|+|-| |.|..-++. +. |
T Consensus 240 ~Gi~~~GP~paDt~F~~~~~~~~D~vlaMYHDQGlip~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIA-----Gk-G-- 311 (334)
T 3lxy_A 240 QGINLIGPLPADTLFQPKYLQHADAVLAMYHDQGLPVLKYQGFGRAVNITLGLPFIRTSVDHGTALELA-----AT-G-- 311 (334)
T ss_dssp TTCCEEEEECHHHHTSHHHHTTCSEEEESSHHHHHHHHHHHHTTCCEEEEESSSSCEEEESSCCCGGGT-----TT-T--
T ss_pred CCCceeCCCChHHhcChhhhccCCEEEEcccchhhHhHHhcccCccEEEecCCCeeeecCCCCcchhhc-----cC-C--
Confidence 37888899987665 356788999998765322 24444432 3568998854 456555555 22 2
Q ss_pred eCCCCHHHHHHHHHHHh
Q 017114 293 FNPGDLDDCLSKLEPLL 309 (377)
Q Consensus 293 ~~~~~~~~l~~~i~~~~ 309 (377)
--|+.++.++|...+
T Consensus 312 --~A~~~S~~~Ai~~A~ 326 (334)
T 3lxy_A 312 --TADVGSFITALNLAI 326 (334)
T ss_dssp --CSCCHHHHHHHHHHH
T ss_pred --CCChHHHHHHHHHHH
Confidence 227788998887653
No 290
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=23.12 E-value=1.7e+02 Score=19.60 Aligned_cols=56 Identities=23% Similarity=0.253 Sum_probs=29.9
Q ss_pred HHHHHhhcCCC--EEEccccCchhHHHHHhcCCEEEeccCCcccchHHHHHH--hcCCCeEE
Q 017114 214 EELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM--SSGIPVVG 271 (377)
Q Consensus 214 ~~l~~~~~~~~--v~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~--a~G~PvI~ 271 (377)
+.+++.+++.+ +. ....+..++...+..+|+++........ ..-++.. -.++||+.
T Consensus 22 ~kl~~~~~~~gi~~~-i~~~~~~~~~~~~~~~D~Ii~t~~l~~~-~~~~~~~~~~~~~pv~~ 81 (109)
T 2l2q_A 22 QRIEKYAKSKNINAT-IEAIAETRLSEVVDRFDVVLLAPQSRFN-KKRLEEITKPKGIPIEI 81 (109)
T ss_dssp HHHHHHHHHHTCSEE-EEEECSTTHHHHTTTCSEEEECSCCSSH-HHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHCCCCeE-EEEecHHHHHhhcCCCCEEEECCccHHH-HHHHHHHhcccCCCEEE
Confidence 34444444333 22 2333445777778899998876542211 2223332 25899974
No 291
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=23.07 E-value=3.1e+02 Score=22.49 Aligned_cols=60 Identities=10% Similarity=0.135 Sum_probs=39.0
Q ss_pred HHHHHHHhC----CCceEEEEecCcc-HHHHHHhhcCC--CEEEccccCchhHHHHHhcCCEEEeccC
Q 017114 191 FLKRVMDRL----PEARIAFIGDGPY-REELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSE 251 (377)
Q Consensus 191 ~l~~a~~~l----~~~~l~i~G~g~~-~~~l~~~~~~~--~v~~~g~~~~~~~~~~~~~adi~v~ps~ 251 (377)
-++++++.. .+-+.+++|.+.. -.-+..++... .|...-..+ .++.+.++.||++|....
T Consensus 145 gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t-~~L~~~~~~ADIVI~Avg 211 (288)
T 1b0a_A 145 GIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT-KNLRHHVENADLLIVAVG 211 (288)
T ss_dssp HHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC-SCHHHHHHHCSEEEECSC
T ss_pred HHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc-hhHHHHhccCCEEEECCC
Confidence 345555544 5789999998753 44444444443 355554332 689999999999997543
No 292
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=22.76 E-value=57 Score=25.73 Aligned_cols=39 Identities=21% Similarity=-0.026 Sum_probs=27.4
Q ss_pred hcCCEEEeccCCcccchHHHHHHhcCCCeEEecCCCCCc
Q 017114 241 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD 279 (377)
Q Consensus 241 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~~ 279 (377)
..+|++|--|..+..-.-+--|...|+|+|.-..|...+
T Consensus 52 ~~~DVvIDFT~P~a~~~~~~~~~~~g~~~ViGTTG~~~~ 90 (228)
T 1vm6_A 52 DSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEE 90 (228)
T ss_dssp SCCSEEEECSCGGGHHHHHHHHHHHTCEEEECCCSCCHH
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHcCCCEEEeCCCCCHH
Confidence 478999966665555555667889999999765554433
No 293
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=22.61 E-value=2.1e+02 Score=24.61 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=29.3
Q ss_pred hhHHHHHhcCCEEEeccCCc------ccchHHHHHHhcCCCeEE--ecCCCCCc
Q 017114 234 EELSQAYASGDVFVMPSESE------TLGLVVLEAMSSGIPVVG--VRAGGIPD 279 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~~e------~~~~~~~Ea~a~G~PvI~--~~~~~~~~ 279 (377)
+++.+.++.||+++...... -+.-..++.|.-|.-+|- .+.|+.-|
T Consensus 257 ~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e 310 (381)
T 3p2y_A 257 QALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCE 310 (381)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBT
T ss_pred HHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccc
Confidence 46778999999998643211 134567888877776663 34555544
No 294
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=22.50 E-value=1.4e+02 Score=21.68 Aligned_cols=65 Identities=14% Similarity=0.214 Sum_probs=37.5
Q ss_pred hcCC-EEEeccCCcccchHHHHHH----hcCCCeEEecCCC--CCc------cccccCCCCeeEEeCCCCHHHHHHHHHH
Q 017114 241 ASGD-VFVMPSESETLGLVVLEAM----SSGIPVVGVRAGG--IPD------IIPEDQDGKIGYLFNPGDLDDCLSKLEP 307 (377)
Q Consensus 241 ~~ad-i~v~ps~~e~~~~~~~Ea~----a~G~PvI~~~~~~--~~~------~~~~~~~~~~g~~~~~~~~~~l~~~i~~ 307 (377)
..+| +++.|.-+...+..+.+|+ +.++|+|=.-... .+| ++ .+.-.|.++-. -.+...-+++.
T Consensus 69 ~~~dgiiINpgA~THtSvAlrDAl~~l~~~~~P~VEVHiSNi~aRE~FRh~S~~---s~~a~G~I~G~-G~~gY~lAl~~ 144 (151)
T 3u80_A 69 DEKTPVVMNPAAFTHYSYALADAAHMVIDENLPLMEVHISNPSARDEFRKRSVI---SPVATGTITGM-GFYGYKLALDA 144 (151)
T ss_dssp HHTCCEEEECTTCCSCCHHHHHHHHHHHHTTCCEEEEESSCCC---------CS---CCCCSEEEESS-TTHHHHHHHHH
T ss_pred hcCcEEEECcchhhhhhHHHHHHHHHHhhcCCCEEEEEcCCcccccchhhcccc---cccceEEEEec-ChHHHHHHHHH
Confidence 3345 5667877777899999994 4599999443222 223 33 23335555543 45666666655
Q ss_pred Hh
Q 017114 308 LL 309 (377)
Q Consensus 308 ~~ 309 (377)
++
T Consensus 145 ~~ 146 (151)
T 3u80_A 145 VA 146 (151)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 295
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=22.39 E-value=1.1e+02 Score=23.50 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=14.1
Q ss_pred chHHHHHHhcCCCeEEe
Q 017114 256 GLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 256 ~~~~~Ea~a~G~PvI~~ 272 (377)
..+.+.|++.|++||..
T Consensus 55 t~k~~~a~~~g~~IV~~ 71 (214)
T 1t15_A 55 TLKYFLGIAGGKWVVSY 71 (214)
T ss_dssp BHHHHHHHHTTCEEEET
T ss_pred hHHHHHHHhcCCEEeCH
Confidence 57888899999998865
No 296
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=22.32 E-value=1.5e+02 Score=23.19 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=25.0
Q ss_pred CCCEEEeCCCchhHHHHHHHHHhhCCCEEEEeccC
Q 017114 55 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH 89 (377)
Q Consensus 55 ~pDii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~ 89 (377)
.||++++.++..-. .++.-|...|+|+|-.+...
T Consensus 149 ~Pdllvv~Dp~~e~-~ai~Ea~~l~IP~IalvDTn 182 (218)
T 3r8n_B 149 LPDALFVIDADHEH-IAIKEANNLGIPVFAIVDTN 182 (218)
T ss_dssp CCCSCEEEETGGGH-HHHHHHHHHTCCCEEECCSS
T ss_pred CCCeEEecCccccc-HHHHHHHHhCCCEEEEEeCc
Confidence 79999998875443 34557888999998766543
No 297
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=22.14 E-value=1.9e+02 Score=23.07 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=18.3
Q ss_pred EEeecccccccHHHHHHHHHhCCCceEEEEecC
Q 017114 178 VHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDG 210 (377)
Q Consensus 178 ~~~G~~~~~k~~~~l~~a~~~l~~~~l~i~G~g 210 (377)
+..+......+...+.+.+...++...+++.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 195 (291)
T 3egc_A 163 IAAGGVRADNGRDGAIKVLTGADRPTALLTSSH 195 (291)
T ss_dssp EEC------CCHHHHHHHHTC-CCCSEEEESSH
T ss_pred eEeCCCChhHHHHHHHHHHhCCCCCcEEEECCc
Confidence 444666777787877777776677777777654
No 298
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}
Probab=21.97 E-value=2.7e+02 Score=23.48 Aligned_cols=75 Identities=17% Similarity=0.178 Sum_probs=43.1
Q ss_pred CceEEEEecCccHHHHHHhhcCCC--EEEccccC--------chhHHHHHhcCCEEEecc--CC---cccchHHHHHHhc
Q 017114 201 EARIAFIGDGPYREELEKMFTGMP--AVFTGMLL--------GEELSQAYASGDVFVMPS--ES---ETLGLVVLEAMSS 265 (377)
Q Consensus 201 ~~~l~i~G~g~~~~~l~~~~~~~~--v~~~g~~~--------~~~~~~~~~~adi~v~ps--~~---e~~~~~~~Ea~a~ 265 (377)
+-++-|+|-|..-..+.+.+...+ |.....-+ ..++.++++.||++++.. .. .-++...++.|.-
T Consensus 171 gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~ 250 (340)
T 4dgs_A 171 GKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGP 250 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTTSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCC
Confidence 346777777766655555544432 33322111 246888999999988742 22 2345567888887
Q ss_pred CCCeEEecCC
Q 017114 266 GIPVVGVRAG 275 (377)
Q Consensus 266 G~PvI~~~~~ 275 (377)
|.-+|-...|
T Consensus 251 gailIN~aRG 260 (340)
T 4dgs_A 251 EGIVVNVARG 260 (340)
T ss_dssp TCEEEECSCC
T ss_pred CCEEEECCCC
Confidence 8777754433
No 299
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=21.81 E-value=1.5e+02 Score=24.95 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=29.4
Q ss_pred ccchHHHHHHHHhc--CCC-EEEeCCCchhHHHHHHHHH---hhCCCEEEEec
Q 017114 41 LALSPRIISEVARF--KPD-IIHASSPGIMVFGALIIAK---LLCVPIVMSYH 87 (377)
Q Consensus 41 ~~~~~~~~~~i~~~--~pD-ii~~~~~~~~~~~~~~~~~---~~~~~~i~~~h 87 (377)
...+..+.+.+++. ++| +|+.|+...+..-+.++.. ..++|+|++--
T Consensus 57 ~~~w~~la~~I~~~~~~~dG~VItHGTDTmeeTA~~Ls~ll~~~~kPVVlTGA 109 (328)
T 1wls_A 57 PSDWERLAKEIEKEVWEYDGIVITHGTDTMAYSASMLSFMLRNPPIPIVLTGS 109 (328)
T ss_dssp HHHHHHHHHHHHHHTTTCSEEEEECCGGGHHHHHHHHHHHEESCSSEEEEECC
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEcCCchHHHHHHHHHHHHhCCCCCEEEECC
Confidence 44455666666654 677 5556776666655555553 46789988643
No 300
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=21.73 E-value=57 Score=22.30 Aligned_cols=18 Identities=6% Similarity=0.115 Sum_probs=12.0
Q ss_pred hhHHHHHhcCCEEEeccC
Q 017114 234 EELSQAYASGDVFVMPSE 251 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~ 251 (377)
.++...+..+|+++....
T Consensus 61 ~~~~~~~~~~DlIist~~ 78 (113)
T 1tvm_A 61 NEIETYMDGVHLICTTAR 78 (113)
T ss_dssp TTTTTSTTSCSEEEESSC
T ss_pred HHHhhccCCCCEEEECCc
Confidence 455445678999887654
No 301
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=21.69 E-value=1.3e+02 Score=23.70 Aligned_cols=31 Identities=13% Similarity=0.033 Sum_probs=22.6
Q ss_pred hcCCEEEeccCCcccchHHHHHHhcCCCeEEec
Q 017114 241 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 273 (377)
Q Consensus 241 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~~ 273 (377)
..|.-+|.+.. .-..+++.|++.|++||..+
T Consensus 44 ~~~THlV~~~~--~RT~K~l~aia~G~wIvs~~ 74 (235)
T 3al2_A 44 PTCTHIVVGHP--LRNEKYLASVAAGKWVLHRS 74 (235)
T ss_dssp TTCCEEEESSC--CCSHHHHHHHHTTCEEECTH
T ss_pred CCCcEEEECCC--CCCHHHHHHHHcCCcCccHH
Confidence 35566666542 22779999999999999764
No 302
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=21.22 E-value=2.5e+02 Score=24.21 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=24.3
Q ss_pred hhHHHHHhcCCEEEeccCCcccchHHHHHHhcCCCeE
Q 017114 234 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 270 (377)
Q Consensus 234 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 270 (377)
.++.+.+..+|+++-.|...-+.--+++.|+ ..|||
T Consensus 255 ~~L~eav~~ADVlIG~Sap~l~t~emVk~Ma-~~pII 290 (388)
T 1vl6_A 255 GDLETALEGADFFIGVSRGNILKPEWIKKMS-RKPVI 290 (388)
T ss_dssp SCHHHHHTTCSEEEECSCSSCSCHHHHTTSC-SSCEE
T ss_pred hhHHHHHccCCEEEEeCCCCccCHHHHHhcC-CCCEE
Confidence 4588999999999987753334445666665 34554
No 303
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=21.13 E-value=68 Score=28.27 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Q 017114 295 PGDLDDCLSKLEPLLYNQELRETMGQAARQE 325 (377)
Q Consensus 295 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~ 325 (377)
-.+..+.+++|.. +.+|+.+.++.+.+++.
T Consensus 403 G~~~~Era~~li~-iAhpdfr~~L~~~a~~~ 432 (434)
T 3eh7_A 403 GKSLRQRAEALIA-IAHPDFREELTKHLRKR 432 (434)
T ss_dssp TCCHHHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhc-CCCCCcHHHHHHHHHHh
Confidence 4578888898887 78999999998877654
No 304
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=21.05 E-value=72 Score=24.91 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=17.8
Q ss_pred hHHHHHHHHhcCCCEEEeCCCc
Q 017114 44 SPRIISEVARFKPDIIHASSPG 65 (377)
Q Consensus 44 ~~~~~~~i~~~~pDii~~~~~~ 65 (377)
-..+.+.+++.+||+|++.++.
T Consensus 78 d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 78 DVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp HHHHHHHHHTTCCSEEEEEECC
T ss_pred hHHHHHHHHhhCCCEEEEcCch
Confidence 3567889999999999987654
No 305
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=20.72 E-value=2e+02 Score=24.75 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=33.2
Q ss_pred cHHHHHHhhcCCCEEEccccCchhHHHHHhc--CCEEEeccCCcccchHHHHHHh-cCCCeEEec
Q 017114 212 YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMS-SGIPVVGVR 273 (377)
Q Consensus 212 ~~~~l~~~~~~~~v~~~g~~~~~~~~~~~~~--adi~v~ps~~e~~~~~~~Ea~a-~G~PvI~~~ 273 (377)
....+.+..++.++.|.-.+-+.+-.+++.. +|++=.+|. +-....++++++ .|+|||.+.
T Consensus 102 ~~~~L~~~~~~~Gi~~~stpfD~~svd~l~~~~vd~~KIgS~-~~~N~pLL~~va~~gKPViLSt 165 (385)
T 1vli_A 102 WILPLLDYCREKQVIFLSTVCDEGSADLLQSTSPSAFKIASY-EINHLPLLKYVARLNRPMIFST 165 (385)
T ss_dssp GHHHHHHHHHHTTCEEECBCCSHHHHHHHHTTCCSCEEECGG-GTTCHHHHHHHHTTCSCEEEEC
T ss_pred HHHHHHHHHHHcCCcEEEccCCHHHHHHHHhcCCCEEEECcc-cccCHHHHHHHHhcCCeEEEEC
Confidence 3445555555556655544433333344433 466655664 334455666554 688888764
No 306
>2i9n_A MHB4A peptide; beta-hairpin, alpha-helix, de novo protein; NMR {Synthetic}
Probab=20.71 E-value=34 Score=16.47 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=7.4
Q ss_pred ccchHHHHHHhcC
Q 017114 254 TLGLVVLEAMSSG 266 (377)
Q Consensus 254 ~~~~~~~Ea~a~G 266 (377)
.+.-.+.|||+-|
T Consensus 21 ayakriaeamakg 33 (33)
T 2i9n_A 21 AYAKRIAEAMAKG 33 (33)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhCC
Confidence 3344566777654
No 307
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=20.67 E-value=3e+02 Score=21.30 Aligned_cols=94 Identities=20% Similarity=0.276 Sum_probs=50.4
Q ss_pred cccHHHHHHHHH---hCCCceEEEEecCccHH-HHHHhhcCCC---E--EE-ccccCchhHHHHHhcCCEEEeccCCccc
Q 017114 186 EKSLDFLKRVMD---RLPEARIAFIGDGPYRE-ELEKMFTGMP---A--VF-TGMLLGEELSQAYASGDVFVMPSESETL 255 (377)
Q Consensus 186 ~k~~~~l~~a~~---~l~~~~l~i~G~g~~~~-~l~~~~~~~~---v--~~-~g~~~~~~~~~~~~~adi~v~ps~~e~~ 255 (377)
.|-.+.+.+|++ ...+-++.++|.....+ .+++.+...+ | .| -|.+++..+.. +..=|++++... ..-
T Consensus 50 ~kT~~~L~~A~~~i~~i~~~~iLfVgTk~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~-f~~PdlliV~Dp-~~e 127 (208)
T 1vi6_A 50 RKLDERIRVAAKFLSRYEPSKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSE-YREPEVVFVNDP-AID 127 (208)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTT-CCCCSEEEESCT-TTT
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhCCeeecCEECCCcccChhhHh-hCCCCEEEEECC-Ccc
Confidence 344444544443 33456788888665443 3333333222 1 12 34444433322 345666665432 122
Q ss_pred chHHHHHHhcCCCeEEe-cCCCCCccc
Q 017114 256 GLVVLEAMSSGIPVVGV-RAGGIPDII 281 (377)
Q Consensus 256 ~~~~~Ea~a~G~PvI~~-~~~~~~~~~ 281 (377)
...+.||...|+|+|+- |....++.+
T Consensus 128 ~~ai~EA~~l~IPvIalvDTn~~p~~V 154 (208)
T 1vi6_A 128 KQAVSEATAVGIPVVALCDSNNSSADV 154 (208)
T ss_dssp HHHHHHHHHTTCCEEEEECTTCCCTTC
T ss_pred hhHHHHHHHhCCCEEEEeCCCCCcccc
Confidence 46799999999999976 444445544
No 308
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.43 E-value=69 Score=26.03 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred EeCCCCHHHHHHHHHHHhhCHHHH
Q 017114 292 LFNPGDLDDCLSKLEPLLYNQELR 315 (377)
Q Consensus 292 ~~~~~~~~~l~~~i~~~~~~~~~~ 315 (377)
=++|....+|+-+|+--++....|
T Consensus 219 ~~dp~~dpela~alr~s~eee~~r 242 (268)
T 4b4t_W 219 GVDPSMDPELAMALRLSMEEEQQR 242 (268)
T ss_dssp ------------------------
T ss_pred CCCCCCCHHHHHHHHHhHHHHHHH
Confidence 357777778999998766644333
No 309
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=20.43 E-value=1.8e+02 Score=23.53 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=26.7
Q ss_pred chHHHHHHHHhcCCCEEEeCCCch-----h--HHHHHHHHHhhCCCEEE
Q 017114 43 LSPRIISEVARFKPDIIHASSPGI-----M--VFGALIIAKLLCVPIVM 84 (377)
Q Consensus 43 ~~~~~~~~i~~~~pDii~~~~~~~-----~--~~~~~~~~~~~~~~~i~ 84 (377)
....+.++|++.+||+|+++.... . ..+...+++..+.++++
T Consensus 136 l~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~ 184 (273)
T 3dff_A 136 VADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRL 184 (273)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHHHHHHHHcCCCEEE
Confidence 345677889999999999975321 1 12233345667777654
No 310
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=20.39 E-value=2.9e+02 Score=22.53 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=37.8
Q ss_pred HHHHHHhC----CCceEEEEecCcc-HHHHHHhhcCC----CEEEccccCchhHHHHHhcCCEEEeccC
Q 017114 192 LKRVMDRL----PEARIAFIGDGPY-REELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSE 251 (377)
Q Consensus 192 l~~a~~~l----~~~~l~i~G~g~~-~~~l~~~~~~~----~v~~~g~~~~~~~~~~~~~adi~v~ps~ 251 (377)
++++++.. .+-+.+++|.+.. -.-+..+.... .|...-.. ..++.+.+++||++|....
T Consensus 145 i~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~-t~~L~~~~~~ADIVI~Avg 212 (281)
T 2c2x_A 145 IVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTG-TRDLPALTRQADIVVAAVG 212 (281)
T ss_dssp HHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTT-CSCHHHHHTTCSEEEECSC
T ss_pred HHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECc-hhHHHHHHhhCCEEEECCC
Confidence 44444443 5678999998753 34444444333 35555433 2789999999999997653
No 311
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=20.31 E-value=1.4e+02 Score=24.73 Aligned_cols=128 Identities=15% Similarity=0.179 Sum_probs=74.0
Q ss_pred HHHHHHHhcCCeeEec--ChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchH---HHHHhhCCCCCCCeEEEeec
Q 017114 108 LVIKFLHRAADLTLVP--SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVGR 182 (377)
Q Consensus 108 ~~~~~~~~~~d~ii~~--s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G~ 182 (377)
-..+.+-+.+|.++.= .+...+.+.++. .+-||. +=+.+..+|...-.+ .+... +.-+...|.|+|-
T Consensus 86 DTarvls~~~D~iviR~~~~~~~~~la~~~-----~vPVIN-aG~g~~~HPtQ~LaDl~Ti~e~~--g~l~gl~va~vGD 157 (299)
T 1pg5_A 86 DTIRMLNNYSDGIVMRHKYDGASRFASEIS-----DIPVIN-AGDGKHEHPTQAVIDIYTINKHF--NTIDGLVFALLGD 157 (299)
T ss_dssp HHHHHHHHHCSEEEEEESSBTHHHHHHHHC-----SSCEEE-EEETTTBCHHHHHHHHHHHHHHH--SCSTTCEEEEEEC
T ss_pred HHHHHHHHhCCEEEEeCCChhHHHHHHHhC-----CCCEEe-CCCCCCcCcHHHHHHHHHHHHHh--CCcCCcEEEEECC
Confidence 3455666778987763 444555555543 233554 323334444321111 11222 2335678999998
Q ss_pred ccccccHHHHHHHHHhCCCceEEEEecCcc--HHHHHHhhcCCC--EEEccccCchhHHHHHhcCCEEEeccC
Q 017114 183 LGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSE 251 (377)
Q Consensus 183 ~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~--~~~l~~~~~~~~--v~~~g~~~~~~~~~~~~~adi~v~ps~ 251 (377)
.....-...++.++..++++++.++|...+ .+.+ +++.+ +.+. .++.+.+..||++.....
T Consensus 158 ~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~---~~~~g~~~~~~-----~d~~eav~~aDvvyt~~~ 222 (299)
T 1pg5_A 158 LKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEI---LDELNYPVKEV-----ENPFEVINEVDVLYVTRI 222 (299)
T ss_dssp CSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHH---HTTCCSCEEEE-----SCGGGTGGGCSEEEEECC
T ss_pred CCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHH---HHHcCCeEEEe-----CCHHHHhcCCCEEEeCCc
Confidence 744455788899999998999999995332 1222 22222 2222 466778899999888765
No 312
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=20.13 E-value=96 Score=26.54 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=29.7
Q ss_pred hhHHHHHhc--CCEEEeccCCcccchHHHHHHhcCCCeEEe
Q 017114 234 EELSQAYAS--GDVFVMPSESETLGLVVLEAMSSGIPVVGV 272 (377)
Q Consensus 234 ~~~~~~~~~--adi~v~ps~~e~~~~~~~Ea~a~G~PvI~~ 272 (377)
.++.++++. .|+++..+......-.+.+|+..|++|++-
T Consensus 73 ~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~E 113 (383)
T 3oqb_A 73 TDLDAALADKNDTMFFDAATTQARPGLLTQAINAGKHVYCE 113 (383)
T ss_dssp SCHHHHHHCSSCCEEEECSCSSSSHHHHHHHHTTTCEEEEC
T ss_pred CCHHHHhcCCCCCEEEECCCchHHHHHHHHHHHCCCeEEEc
Confidence 566677766 788887766555566788999999999964
No 313
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A
Probab=20.11 E-value=3.8e+02 Score=22.35 Aligned_cols=126 Identities=14% Similarity=0.165 Sum_probs=71.9
Q ss_pred HHHHHHHhcCCeeEe--cChhHHHHHHHhcccCCCcEEEecCCCCCCCCCCccCchH---HHHHhhCCCCCCCeEEEeec
Q 017114 108 LVIKFLHRAADLTLV--PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVGR 182 (377)
Q Consensus 108 ~~~~~~~~~~d~ii~--~s~~~~~~~~~~~~~~~~~i~~i~~gv~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G~ 182 (377)
-..+.+-+.+|.++. .++...+.+.++. .+-||. +-+ +..+|...-.+ .+... +.-+...|.|+|-
T Consensus 93 DTarvls~~~D~iviR~~~~~~~~~lA~~~-----~vPVIN-a~~-~~~HPtQaLaDl~Ti~e~~--g~l~gl~va~vGD 163 (321)
T 1oth_A 93 DTARVLSSMADAVLARVYKQSDLDTLAKEA-----SIPIIN-GLS-DLYHPIQILADYLTLQEHY--SSLKGLTLSWIGD 163 (321)
T ss_dssp HHHHHHHHHCSEEEEECSCHHHHHHHHHHC-----SSCEEE-SCC-SSCCHHHHHHHHHHHHHHH--SCCTTCEEEEESC
T ss_pred HHHHHHHHhCCEEEEeCCChhHHHHHHHhC-----CCCEEc-CCC-CCCCcHHHHHHHHHHHHHh--CCcCCcEEEEECC
Confidence 455666677898887 4555556665543 344665 444 44444321111 11222 2335678999998
Q ss_pred ccccccHHHHHHHHHhCCCceEEEEecCcc--HHHH----HHhhcCC--CEEEccccCchhHHHHHhcCCEEEecc
Q 017114 183 LGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REEL----EKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPS 250 (377)
Q Consensus 183 ~~~~k~~~~l~~a~~~l~~~~l~i~G~g~~--~~~l----~~~~~~~--~v~~~g~~~~~~~~~~~~~adi~v~ps 250 (377)
.. .-...++.++..+ ++++.++|...+ .+.+ ++.+++. .+.+. .++.+.+..||++..-.
T Consensus 164 ~~--~va~Sl~~~~~~~-G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~-----~d~~eav~~aDvvy~d~ 231 (321)
T 1oth_A 164 GN--NILHSIMMSAAKF-GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLT-----NDPLEAAHGGNVLITDT 231 (321)
T ss_dssp SS--HHHHHHHTTTGGG-TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEE-----SCHHHHHTTCSEEEECC
T ss_pred ch--hhHHHHHHHHHHc-CCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEE-----ECHHHHhccCCEEEEec
Confidence 53 2355667777777 889999995432 1222 2222221 23322 56778899999988744
Done!