Query 017115
Match_columns 377
No_of_seqs 145 out of 1394
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 05:44:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017115.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017115hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 4.8E-83 1E-87 604.6 34.3 371 7-377 5-375 (375)
2 PTZ00281 actin; Provisional 100.0 6.8E-83 1.5E-87 605.3 34.3 376 2-377 1-376 (376)
3 PTZ00466 actin-like protein; P 100.0 8.4E-82 1.8E-86 596.6 35.6 370 6-377 11-380 (380)
4 KOG0676 Actin and related prot 100.0 5.7E-82 1.2E-86 577.5 24.9 369 4-377 4-372 (372)
5 PTZ00004 actin-2; Provisional 100.0 1.3E-80 2.9E-85 590.5 34.6 376 2-377 1-378 (378)
6 PTZ00280 Actin-related protein 100.0 2.3E-74 5E-79 554.5 34.8 369 7-375 4-408 (414)
7 PF00022 Actin: Actin; InterP 100.0 5.9E-75 1.3E-79 558.0 29.4 368 4-377 1-393 (393)
8 smart00268 ACTIN Actin. ACTIN 100.0 1.1E-73 2.4E-78 544.9 34.3 369 8-377 2-373 (373)
9 KOG0679 Actin-related protein 100.0 2.2E-72 4.7E-77 499.6 26.2 368 4-376 8-425 (426)
10 cd00012 ACTIN Actin; An ubiqui 100.0 3.6E-71 7.9E-76 527.0 33.7 367 9-375 1-371 (371)
11 KOG0677 Actin-related protein 100.0 9.9E-71 2.2E-75 465.1 21.5 371 5-375 2-386 (389)
12 COG5277 Actin and related prot 100.0 7.7E-67 1.7E-71 495.5 29.2 374 4-377 3-444 (444)
13 KOG0680 Actin-related protein 100.0 1.4E-63 3.1E-68 433.1 25.4 362 6-377 2-399 (400)
14 KOG0681 Actin-related protein 100.0 6.4E-53 1.4E-57 388.9 22.8 363 7-374 23-637 (645)
15 KOG0678 Actin-related protein 100.0 5.4E-51 1.2E-55 355.2 15.1 367 7-374 4-407 (415)
16 KOG0797 Actin-related protein 100.0 7.2E-40 1.6E-44 300.6 19.7 306 66-377 178-615 (618)
17 PRK13930 rod shape-determining 100.0 7.8E-38 1.7E-42 294.1 16.6 306 10-350 11-327 (335)
18 PRK13927 rod shape-determining 100.0 4.7E-36 1E-40 281.8 16.9 306 9-351 7-324 (334)
19 TIGR00904 mreB cell shape dete 100.0 1.5E-35 3.2E-40 277.9 16.6 310 10-350 5-326 (333)
20 PRK13929 rod-share determining 100.0 2.6E-35 5.7E-40 275.7 16.7 302 9-348 6-323 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 2.5E-33 5.4E-38 256.8 17.4 305 8-350 2-320 (326)
22 PRK13928 rod shape-determining 100.0 5.3E-32 1.1E-36 254.1 15.9 305 10-350 6-322 (336)
23 COG1077 MreB Actin-like ATPase 100.0 6.9E-28 1.5E-32 212.8 14.1 312 7-349 6-329 (342)
24 TIGR02529 EutJ ethanolamine ut 99.9 9E-23 2E-27 181.4 15.4 208 70-347 28-238 (239)
25 PRK15080 ethanolamine utilizat 99.9 3.5E-20 7.7E-25 167.7 19.5 243 5-349 22-267 (267)
26 CHL00094 dnaK heat shock prote 99.8 9E-20 2E-24 183.9 15.2 297 8-351 3-376 (621)
27 TIGR01991 HscA Fe-S protein as 99.8 4.3E-20 9.4E-25 185.2 12.8 300 9-351 1-360 (599)
28 PTZ00400 DnaK-type molecular c 99.8 1.1E-19 2.5E-24 183.8 15.9 216 102-351 174-415 (663)
29 PRK00290 dnaK molecular chaper 99.8 8.3E-20 1.8E-24 184.7 12.9 213 103-351 134-374 (627)
30 PLN03184 chloroplast Hsp70; Pr 99.8 2.1E-19 4.5E-24 182.0 15.6 297 8-351 40-413 (673)
31 TIGR02350 prok_dnaK chaperone 99.8 1.4E-19 3.1E-24 182.3 13.4 213 103-351 131-372 (595)
32 PTZ00186 heat shock 70 kDa pre 99.8 2.9E-19 6.3E-24 179.7 15.0 217 103-351 161-401 (657)
33 PRK01433 hscA chaperone protei 99.8 4.1E-19 8.8E-24 177.1 15.5 205 103-351 142-356 (595)
34 PRK13411 molecular chaperone D 99.8 3.6E-19 7.9E-24 180.0 13.6 214 103-351 134-376 (653)
35 PRK05183 hscA chaperone protei 99.8 3.5E-19 7.5E-24 179.1 13.3 296 7-351 19-376 (616)
36 PRK13410 molecular chaperone D 99.8 3.6E-19 7.8E-24 179.8 13.2 213 103-351 136-376 (668)
37 PTZ00009 heat shock 70 kDa pro 99.8 2.7E-18 5.8E-23 173.9 15.8 214 103-351 141-381 (653)
38 PRK11678 putative chaperone; P 99.7 1.5E-16 3.3E-21 153.5 13.8 180 9-192 2-260 (450)
39 COG0443 DnaK Molecular chapero 99.7 5.7E-16 1.2E-20 153.9 17.4 311 6-351 4-357 (579)
40 PF00012 HSP70: Hsp70 protein; 99.7 5E-17 1.1E-21 164.9 7.4 218 103-351 136-376 (602)
41 TIGR01174 ftsA cell division p 99.6 8.2E-15 1.8E-19 139.6 16.7 181 114-334 156-347 (371)
42 PRK09472 ftsA cell division pr 99.6 4E-14 8.6E-19 136.6 20.3 202 114-351 164-388 (420)
43 COG0849 ftsA Cell division ATP 99.6 3.8E-14 8.2E-19 133.7 15.0 201 114-351 163-380 (418)
44 KOG0100 Molecular chaperones G 99.5 4.8E-13 1E-17 121.5 17.1 214 103-351 173-411 (663)
45 COG4820 EutJ Ethanolamine util 99.5 3.8E-14 8.2E-19 117.0 3.5 236 5-344 27-267 (277)
46 KOG0101 Molecular chaperones H 99.4 1.6E-12 3.5E-17 126.5 13.9 214 103-351 144-383 (620)
47 TIGR01175 pilM type IV pilus a 99.4 4.9E-11 1.1E-15 112.9 19.1 155 114-320 141-307 (348)
48 PRK13917 plasmid segregation p 99.3 6.7E-11 1.5E-15 111.0 16.6 187 7-198 2-233 (344)
49 PF11104 PilM_2: Type IV pilus 99.3 1.4E-10 3.1E-15 109.2 16.4 194 80-334 86-307 (340)
50 TIGR03739 PRTRC_D PRTRC system 99.3 1.9E-10 4.1E-15 107.3 16.4 183 12-198 2-215 (320)
51 KOG0104 Molecular chaperones G 99.2 1.2E-10 2.7E-15 113.3 11.6 94 103-197 159-275 (902)
52 COG4972 PilM Tfp pilus assembl 99.1 1.9E-09 4.1E-14 96.5 14.9 149 121-320 153-312 (354)
53 KOG0103 Molecular chaperones H 99.0 1.1E-08 2.3E-13 99.6 16.6 96 101-197 136-246 (727)
54 KOG0102 Molecular chaperones m 98.7 3.6E-07 7.8E-12 86.8 15.2 211 103-349 161-399 (640)
55 PF06406 StbA: StbA protein; 98.5 2.4E-07 5.2E-12 86.3 8.4 110 87-197 81-212 (318)
56 TIGR00241 CoA_E_activ CoA-subs 98.5 4.5E-06 9.8E-11 75.0 16.1 43 298-348 206-248 (248)
57 PRK10719 eutA reactivating fac 98.3 5E-06 1.1E-10 79.2 10.5 163 1-190 1-184 (475)
58 TIGR03192 benz_CoA_bzdQ benzoy 98.2 8.4E-06 1.8E-10 73.6 9.8 48 295-350 239-287 (293)
59 COG1924 Activator of 2-hydroxy 98.2 9.1E-05 2E-09 68.2 15.7 45 299-351 346-390 (396)
60 TIGR03286 methan_mark_15 putat 98.2 7.9E-06 1.7E-10 76.7 8.7 46 297-350 357-402 (404)
61 TIGR02261 benz_CoA_red_D benzo 98.1 1.8E-05 3.8E-10 70.6 9.7 50 297-349 213-262 (262)
62 PF06277 EutA: Ethanolamine ut 97.3 0.0017 3.7E-08 62.2 10.4 173 7-202 3-204 (473)
63 PRK13317 pantothenate kinase; 97.3 0.011 2.4E-07 53.8 14.4 52 294-350 221-273 (277)
64 PF08841 DDR: Diol dehydratase 96.8 0.0034 7.4E-08 55.7 6.1 187 114-322 93-302 (332)
65 TIGR02259 benz_CoA_red_A benzo 96.4 0.011 2.4E-07 55.5 7.5 51 296-349 382-432 (432)
66 PF01869 BcrAD_BadFG: BadF/Bad 96.2 0.0064 1.4E-07 55.4 4.5 48 299-349 224-271 (271)
67 COG0248 GppA Exopolyphosphatas 95.8 0.038 8.2E-07 54.3 8.4 72 119-192 91-169 (492)
68 TIGR03706 exo_poly_only exopol 95.7 0.045 9.8E-07 50.6 8.2 75 115-192 84-165 (300)
69 PRK11031 guanosine pentaphosph 95.5 0.12 2.5E-06 51.4 10.4 83 106-191 81-171 (496)
70 TIGR00555 panK_eukar pantothen 95.4 0.17 3.7E-06 45.9 10.4 68 275-347 209-278 (279)
71 PRK09557 fructokinase; Reviewe 95.2 1 2.3E-05 41.5 15.3 67 276-349 232-299 (301)
72 PRK10854 exopolyphosphatase; P 94.9 0.13 2.8E-06 51.3 9.0 73 114-189 94-174 (513)
73 TIGR00744 ROK_glcA_fam ROK fam 94.8 1.3 2.7E-05 41.2 14.9 52 121-174 89-147 (318)
74 PRK03011 butyrate kinase; Prov 94.5 2.8 6E-05 39.8 16.3 47 297-347 297-343 (358)
75 PF14450 FtsA: Cell division p 94.3 0.2 4.4E-06 39.4 7.0 58 153-221 2-70 (120)
76 COG4819 EutA Ethanolamine util 92.4 1.8 3.9E-05 39.8 10.5 156 4-187 2-180 (473)
77 PF01968 Hydantoinase_A: Hydan 92.3 0.14 3E-06 47.1 3.6 33 143-175 69-102 (290)
78 PF02541 Ppx-GppA: Ppx/GppA ph 91.6 0.39 8.4E-06 44.0 5.8 74 116-192 71-152 (285)
79 PF07318 DUF1464: Protein of u 91.2 0.97 2.1E-05 42.0 7.7 50 298-351 263-315 (343)
80 COG2441 Predicted butyrate kin 91.1 0.26 5.6E-06 43.9 3.7 47 150-196 163-213 (374)
81 TIGR03123 one_C_unchar_1 proba 89.3 0.41 8.9E-06 44.3 3.7 29 146-174 124-152 (318)
82 TIGR02707 butyr_kinase butyrat 87.2 27 0.00058 33.1 14.5 34 297-334 295-328 (351)
83 PRK13321 pantothenate kinase; 87.0 6.9 0.00015 35.2 10.1 19 9-27 2-20 (256)
84 PRK13324 pantothenate kinase; 86.3 18 0.00039 32.6 12.3 19 9-27 2-20 (258)
85 COG1521 Pantothenate kinase ty 84.9 15 0.00033 32.8 10.9 19 9-27 2-20 (251)
86 PF03309 Pan_kinase: Type III 84.7 9.8 0.00021 32.9 9.6 18 10-27 2-19 (206)
87 PRK13318 pantothenate kinase; 83.1 25 0.00054 31.6 11.9 18 9-26 2-19 (258)
88 COG1548 Predicted transcriptio 82.4 0.92 2E-05 40.1 2.2 23 149-171 129-151 (330)
89 TIGR00671 baf pantothenate kin 82.0 15 0.00032 32.8 9.8 18 10-27 2-19 (243)
90 COG1940 NagC Transcriptional r 81.2 45 0.00098 30.7 14.2 47 127-175 104-157 (314)
91 PRK13329 pantothenate kinase; 78.6 17 0.00038 32.5 9.1 17 9-25 3-19 (249)
92 PF08735 DUF1786: Putative pyr 76.4 19 0.00042 32.1 8.5 65 127-194 138-212 (254)
93 PRK13326 pantothenate kinase; 75.3 38 0.00082 30.6 10.4 20 9-28 8-27 (262)
94 PRK13320 pantothenate kinase; 75.3 41 0.00089 30.0 10.5 19 9-27 4-22 (244)
95 COG0145 HyuA N-methylhydantoin 72.5 3.3 7.2E-05 42.6 3.2 31 143-173 269-301 (674)
96 KOG2708 Predicted metalloprote 71.2 6.8 0.00015 34.2 4.2 52 147-200 121-173 (336)
97 PRK05082 N-acetylmannosamine k 65.4 48 0.001 30.2 9.1 49 124-174 91-145 (291)
98 smart00842 FtsA Cell division 64.7 14 0.00031 31.3 5.1 22 71-92 35-56 (187)
99 PRK12408 glucokinase; Provisio 60.9 40 0.00086 31.7 7.8 48 123-171 102-166 (336)
100 PRK05082 N-acetylmannosamine k 58.4 14 0.00031 33.7 4.3 66 276-349 221-286 (291)
101 PRK13331 pantothenate kinase; 57.2 11 0.00024 33.7 3.2 28 1-28 1-28 (251)
102 KOG1385 Nucleoside phosphatase 56.6 75 0.0016 30.6 8.5 17 149-165 212-228 (453)
103 PRK14101 bifunctional glucokin 56.5 22 0.00048 36.7 5.7 24 123-146 99-122 (638)
104 PF03702 UPF0075: Uncharacteri 56.0 5.6 0.00012 37.7 1.1 26 296-321 285-310 (364)
105 PRK00292 glk glucokinase; Prov 55.2 88 0.0019 28.9 9.1 46 124-170 85-147 (316)
106 PRK13310 N-acetyl-D-glucosamin 53.3 19 0.00041 33.1 4.2 53 121-175 88-147 (303)
107 PRK09698 D-allose kinase; Prov 52.7 27 0.00059 32.0 5.2 53 121-175 96-154 (302)
108 KOG1386 Nucleoside phosphatase 48.5 1.4E+02 0.0031 29.4 9.1 87 82-169 65-181 (501)
109 PRK13310 N-acetyl-D-glucosamin 48.4 1.7E+02 0.0038 26.6 9.8 67 276-349 233-300 (303)
110 PRK13311 N-acetyl-D-glucosamin 46.3 2.1E+02 0.0046 25.4 9.8 53 121-175 88-147 (256)
111 PF02782 FGGY_C: FGGY family o 43.5 19 0.0004 30.6 2.4 47 296-351 150-196 (198)
112 smart00732 YqgFc Likely ribonu 43.3 25 0.00054 25.9 2.8 19 8-26 2-20 (99)
113 smart00732 YqgFc Likely ribonu 40.7 80 0.0017 23.1 5.3 44 152-195 3-47 (99)
114 COG4012 Uncharacterized protei 39.6 1.5E+02 0.0033 26.7 7.3 40 134-173 207-250 (342)
115 PRK09585 anmK anhydro-N-acetyl 37.6 22 0.00048 33.8 2.0 23 297-319 288-310 (365)
116 PF03727 Hexokinase_2: Hexokin 37.2 32 0.00069 30.7 2.9 50 299-351 189-240 (243)
117 TIGR01319 glmL_fam conserved h 37.2 20 0.00043 35.0 1.7 70 104-173 176-272 (463)
118 PRK13322 pantothenate kinase; 36.4 3.1E+02 0.0067 24.4 10.8 18 9-26 2-19 (246)
119 TIGR03367 queuosine_QueD queuo 36.1 33 0.00071 25.4 2.4 49 74-129 42-90 (92)
120 PF13941 MutL: MutL protein 33.9 26 0.00056 34.4 1.9 72 102-173 178-271 (457)
121 PRK00976 hypothetical protein; 32.4 58 0.0013 30.4 3.8 30 143-173 142-171 (326)
122 PF13941 MutL: MutL protein 32.3 29 0.00063 34.0 2.0 23 9-31 2-26 (457)
123 PTZ00340 O-sialoglycoprotein e 31.8 23 0.00051 33.3 1.2 84 82-166 51-140 (345)
124 TIGR03192 benz_CoA_bzdQ benzoy 30.8 86 0.0019 28.8 4.6 46 153-200 35-83 (293)
125 PRK15027 xylulokinase; Provisi 29.0 41 0.00088 33.3 2.4 48 296-351 387-434 (484)
126 PF00370 FGGY_N: FGGY family o 27.0 46 0.001 29.4 2.2 19 9-27 2-20 (245)
127 PLN02666 5-oxoprolinase 26.9 61 0.0013 36.3 3.4 21 150-171 314-334 (1275)
128 PRK00976 hypothetical protein; 26.6 93 0.002 29.0 4.1 43 298-350 266-310 (326)
129 cd08627 PI-PLCc_gamma1 Catalyt 25.7 1.1E+02 0.0024 27.0 4.1 32 100-131 86-117 (229)
130 TIGR01312 XylB D-xylulose kina 24.9 74 0.0016 31.3 3.5 47 296-351 391-437 (481)
131 TIGR03286 methan_mark_15 putat 24.2 1.3E+02 0.0028 29.0 4.7 50 151-200 145-194 (404)
132 KOG2707 Predicted metalloprote 24.1 63 0.0014 30.3 2.5 74 276-351 288-362 (405)
133 TIGR00329 gcp_kae1 metallohydr 23.7 69 0.0015 29.6 2.8 87 82-170 50-145 (305)
134 cd08630 PI-PLCc_delta3 Catalyt 23.5 1.2E+02 0.0026 27.3 4.1 44 82-131 74-117 (258)
135 COG0533 QRI7 Metal-dependent p 23.3 43 0.00094 31.3 1.3 87 82-169 52-145 (342)
136 cd08596 PI-PLCc_epsilon Cataly 23.2 1.2E+02 0.0026 27.2 4.0 43 83-131 75-117 (254)
137 cd08626 PI-PLCc_beta4 Catalyti 23.2 1.2E+02 0.0027 27.2 4.1 45 82-132 76-120 (257)
138 cd08592 PI-PLCc_gamma Catalyti 22.9 1.2E+02 0.0027 26.7 4.0 43 83-131 75-117 (229)
139 cd08595 PI-PLCc_zeta Catalytic 22.8 1.2E+02 0.0027 27.2 4.0 44 82-131 74-117 (257)
140 cd08594 PI-PLCc_eta Catalytic 22.7 1.3E+02 0.0028 26.5 4.0 43 83-131 75-117 (227)
141 cd08632 PI-PLCc_eta1 Catalytic 22.7 1.3E+02 0.0028 26.9 4.1 43 83-131 75-117 (253)
142 PRK13333 pantothenate kinase; 22.6 98 0.0021 26.8 3.3 27 141-170 77-103 (206)
143 cd08631 PI-PLCc_delta4 Catalyt 22.3 1.3E+02 0.0027 27.2 4.0 43 83-131 75-117 (258)
144 PF01968 Hydantoinase_A: Hydan 22.0 50 0.0011 30.3 1.5 27 5-31 75-101 (290)
145 cd08629 PI-PLCc_delta1 Catalyt 22.0 1.3E+02 0.0028 27.0 4.0 43 83-131 75-117 (258)
146 cd08591 PI-PLCc_beta Catalytic 21.7 1.3E+02 0.0029 27.0 4.0 43 83-131 77-119 (257)
147 cd08598 PI-PLC1c_yeast Catalyt 21.7 1.3E+02 0.0029 26.5 4.0 43 83-131 75-117 (231)
148 cd08593 PI-PLCc_delta Catalyti 21.7 1.3E+02 0.0028 27.1 4.0 44 82-131 74-117 (257)
149 PF03612 EIIBC-GUT_N: Sorbitol 21.3 51 0.0011 27.8 1.2 32 3-39 59-90 (183)
150 COG1149 MinD superfamily P-loo 20.8 1.2E+02 0.0026 27.6 3.4 38 102-140 187-224 (284)
151 cd08633 PI-PLCc_eta2 Catalytic 20.6 1.5E+02 0.0032 26.6 4.0 43 83-131 75-117 (254)
152 KOG1794 N-Acetylglucosamine ki 20.4 1.2E+02 0.0026 27.8 3.4 70 276-350 244-315 (336)
153 TIGR01311 glycerol_kin glycero 20.3 86 0.0019 31.1 2.9 47 296-351 400-446 (493)
154 PRK13321 pantothenate kinase; 20.0 3E+02 0.0066 24.5 6.1 47 153-199 3-51 (256)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=4.8e-83 Score=604.57 Aligned_cols=371 Identities=56% Similarity=1.023 Sum_probs=346.9
Q ss_pred CCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHHHHHH
Q 017115 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEK 86 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~~ 86 (377)
.++||||+||+++|+||+|++.|++++||++++++......+...+++++|+++....+...+++|+++|.|.|||.++.
T Consensus 5 ~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e~ 84 (375)
T PTZ00452 5 YPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIEI 84 (375)
T ss_pred CCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHHH
Confidence 45899999999999999999999999999999987653222333456789999887777889999999999999999999
Q ss_pred HHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCceEEEE
Q 017115 87 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 166 (377)
Q Consensus 87 ~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~~ 166 (377)
+|+|+|.+.|+++++++|+++++|+++++..|+++++++||.+++|++++.+++++++|++|+++|+|||+|++.|+|+|
T Consensus 85 iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~P 164 (375)
T PTZ00452 85 IWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVP 164 (375)
T ss_pred HHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEE
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCC
Q 017115 167 IYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPD 246 (377)
Q Consensus 167 v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (377)
|+||+++.++..++++||++++++|.++|.++++++....+.+.++++|+++||++.|++++.............|.+||
T Consensus 165 V~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPD 244 (375)
T PTZ00452 165 VFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPD 244 (375)
T ss_pred EECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCC
Confidence 99999999999999999999999999999988888887777889999999999999998877665444344567899999
Q ss_pred CcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCC
Q 017115 247 GQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSS 326 (377)
Q Consensus 247 ~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~ 326 (377)
|+.|.++.+||.++|+||+|++++.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||++++|..
T Consensus 245 g~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~ 324 (375)
T PTZ00452 245 GNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQ 324 (375)
T ss_pred CCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017115 327 MKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF 377 (377)
Q Consensus 327 ~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
.++++..++++.+++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 325 ~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 325 LKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred ceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 899999999999999999999999999999999999999999999999997
No 2
>PTZ00281 actin; Provisional
Probab=100.00 E-value=6.8e-83 Score=605.32 Aligned_cols=376 Identities=90% Similarity=1.408 Sum_probs=352.8
Q ss_pred CCCCCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCH
Q 017115 2 ADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNW 81 (377)
Q Consensus 2 ~~~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~ 81 (377)
|.+++.++||||+||+++|+||+|++.|+.++||.++++++.....+.++.+.++|+++........+++|+++|.|.||
T Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dw 80 (376)
T PTZ00281 1 MDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 80 (376)
T ss_pred CCCCcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCH
Confidence 67889999999999999999999999999999999999877654444455678899998777777889999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCc
Q 017115 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 161 (377)
++++.+|+++|.+.|+++++++|+++++|+++++..|+++++++||.++++++++.+++++++|++|++||+|||+|++.
T Consensus 81 d~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~ 160 (376)
T PTZ00281 81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGV 160 (376)
T ss_pred HHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCce
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCccee
Q 017115 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKS 241 (377)
Q Consensus 162 t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~ 241 (377)
|+|+||+||+++.++..++++||++++++|+++|.++++++.+..+.+.++++|+++|||+.+++.+.+...........
T Consensus 161 t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (376)
T PTZ00281 161 SHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKS 240 (376)
T ss_pred EEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCccccee
Confidence 99999999999999999999999999999999999888888777778899999999999999987776654444455678
Q ss_pred EEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHh
Q 017115 242 YELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITA 321 (377)
Q Consensus 242 ~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~ 321 (377)
|.+|||+.+.++.+||.++|+||+|++++.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||++
T Consensus 241 y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~ 320 (376)
T PTZ00281 241 YELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTA 320 (376)
T ss_pred EECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017115 322 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF 377 (377)
Q Consensus 322 ~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
++|...+++++.++++.+++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus 321 ~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 321 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred hCCCCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 99988899999999999999999999999999999999999999999999999997
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=8.4e-82 Score=596.57 Aligned_cols=370 Identities=53% Similarity=0.973 Sum_probs=345.6
Q ss_pred CCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHHHHH
Q 017115 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 6 ~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~ 85 (377)
+.++||||+||+++|+||+|++.|++++||++++++......+...++.++|+++....+...+++|+++|.|.|||.++
T Consensus 11 ~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~e 90 (380)
T PTZ00466 11 SNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDME 90 (380)
T ss_pred cCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHHH
Confidence 46789999999999999999999999999999998866544444456788999987777777899999999999999999
Q ss_pred HHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCceEEE
Q 017115 86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 165 (377)
Q Consensus 86 ~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~ 165 (377)
.+|+++| +.|++++.++|+++++|+++++..|+++++++||.+++|++++.+++++|+|++|+++|+|||+|++.|+|+
T Consensus 91 ~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~ 169 (380)
T PTZ00466 91 NIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCV 169 (380)
T ss_pred HHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEE
Confidence 9999998 889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcC
Q 017115 166 PIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELP 245 (377)
Q Consensus 166 ~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 245 (377)
||+||+++.++..++++||++++++|+++|.+++..+.+..+.+.++++|+++||++.|+.++..... .......|.+|
T Consensus 170 PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~-~~~~~~~y~LP 248 (380)
T PTZ00466 170 SIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSE-KALTTLPYILP 248 (380)
T ss_pred EEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhcc-ccccceeEECC
Confidence 99999999999999999999999999999998888777777889999999999999999877665332 22245789999
Q ss_pred CCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCC
Q 017115 246 DGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPS 325 (377)
Q Consensus 246 ~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~ 325 (377)
||..|.++.+||.++|+||+|++++.+..+|+++|.++|.+||.|.|+.|++||+|+||+|++|||.+||++||+++.|.
T Consensus 249 dg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~ 328 (380)
T PTZ00466 249 DGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPK 328 (380)
T ss_pred CCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017115 326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF 377 (377)
Q Consensus 326 ~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
..++++..++++++++|+|||++|++.+|++.||||+||+|+|+++++||||
T Consensus 329 ~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 329 DITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred CceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 8899999999999999999999999999999999999999999999999997
No 4
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=5.7e-82 Score=577.48 Aligned_cols=369 Identities=81% Similarity=1.314 Sum_probs=350.5
Q ss_pred CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHHH
Q 017115 4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 4 ~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~ 83 (377)
..+.++||||+||..+|+||+||+.|+.++||.++++++...+.++.+++.++|+++...+ .+++|+++|.|.|||+
T Consensus 4 ~~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~wd~ 80 (372)
T KOG0676|consen 4 ADDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR---TLKYPIERGIVTDWDD 80 (372)
T ss_pred cCCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccc---cccCccccccccchHH
Confidence 4456899999999999999999999999999999999999998888899999999998776 7799999999999999
Q ss_pred HHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCceE
Q 017115 84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 163 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 163 (377)
++.+|.|+|++.|.++|+++|+++++|+++|...|+++++++||.|++|++++...+++ |++|+++|+|||+|++.|.
T Consensus 81 me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~ 158 (372)
T KOG0676|consen 81 MEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTH 158 (372)
T ss_pred HHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCcee
Confidence 99999999999999999999999999999999999999999999999999999554434 9999999999999999999
Q ss_pred EEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEE
Q 017115 164 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYE 243 (377)
Q Consensus 164 v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
++||++|++++++..+.++||++++++++..|.++++++....+.+.++++|+++||+..|++++++...........|.
T Consensus 159 ~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~ 238 (372)
T KOG0676|consen 159 VVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYE 238 (372)
T ss_pred eeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhccccccccccccc
Confidence 99999999999999999999999999999999999999998889999999999999999999988877444455667799
Q ss_pred cCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcC
Q 017115 244 LPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALA 323 (377)
Q Consensus 244 ~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~ 323 (377)
+|||+.+.++.+||.++|++|+|+.++.+..+|++.+.++|.+||+|+|+.|+.||+|+||++.+|||.+||++||+.+.
T Consensus 239 lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~ 318 (372)
T KOG0676|consen 239 LPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALA 318 (372)
T ss_pred CCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017115 324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF 377 (377)
Q Consensus 324 ~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
|...+++++.+|++.+++|+||||+|++.+|+.+||||+||+|.|+++++||||
T Consensus 319 P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 319 PSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred CCCcceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 999999999999999999999999999999999999999999999999999998
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=1.3e-80 Score=590.52 Aligned_cols=376 Identities=80% Similarity=1.297 Sum_probs=350.2
Q ss_pred CCCCCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCH
Q 017115 2 ADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNW 81 (377)
Q Consensus 2 ~~~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~ 81 (377)
|+-++.++||||+||+++|+||+|++.|++++||+++++++.....+...+..++|+++....+...+++|+++|.|.||
T Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~ 80 (378)
T PTZ00004 1 MSVEETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNW 80 (378)
T ss_pred CCCCCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCH
Confidence 56788999999999999999999999999999999999887554444445678899998776666789999999999999
Q ss_pred HHHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCc
Q 017115 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 161 (377)
|.++.+|+++|.+.|++++.++|+++++|+++++..|+.+++++||.++++++++.+++++|+|++|.+||+|||+|++.
T Consensus 81 d~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~ 160 (378)
T PTZ00004 81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160 (378)
T ss_pred HHHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCc
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCC-Ccce
Q 017115 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSS-AVEK 240 (377)
Q Consensus 162 t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~-~~~~ 240 (377)
|+|+||+||+++.++..++++||++++++|+++|.+++..+....+.+.++++|+++|+++.|++++........ ....
T Consensus 161 t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (378)
T PTZ00004 161 SHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEE 240 (378)
T ss_pred EEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccce
Confidence 999999999999999999999999999999999998888877777788999999999999999987765433222 2367
Q ss_pred eEEcCCCcEEeeCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHH
Q 017115 241 SYELPDGQVITIGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREI 319 (377)
Q Consensus 241 ~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL 319 (377)
.|.+|||..+.++.+||.++|+||+|++++.+ ..+|+++|.++|.+||.|.|+.|++||+|+||+|++|||.+||++||
T Consensus 241 ~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL 320 (378)
T PTZ00004 241 SYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKEL 320 (378)
T ss_pred EEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHH
Confidence 89999999999999999999999999998887 89999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017115 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF 377 (377)
Q Consensus 320 ~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
++++|...++++..++++.+++|+|||++|++.+|+++||||+||+|+|++++.||||
T Consensus 321 ~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 321 TTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred HHhCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 9999988889999999999999999999999999999999999999999999999997
No 6
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=2.3e-74 Score=554.51 Aligned_cols=369 Identities=42% Similarity=0.753 Sum_probs=331.5
Q ss_pred CCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCcc---ccCCCccceeccccccccccceeeceecCCccCCHHH
Q 017115 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM---VGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~---~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~ 83 (377)
.++||||+||+++|+||+|++.|++++||++++++..... .+....++++|+++........+++|+++|.|.|||.
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~ 83 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDL 83 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHH
Confidence 5689999999999999999999999999999987653211 1112336789999988777789999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhc----------CCceEE
Q 017115 84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYAS----------GRTTGI 153 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g~~~~l 153 (377)
++.+|+++|.+.|++++.++|+++++|++++...|+.+++++||.++++++++..++++|+|++ |.++|+
T Consensus 84 ~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tgl 163 (414)
T PTZ00280 84 MEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGT 163 (414)
T ss_pred HHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEE
Confidence 9999999988899999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhc
Q 017115 154 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAK 233 (377)
Q Consensus 154 VVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~ 233 (377)
|||+|++.|+|+||++|+++.++..++++||++++++|.++|.+++..+....+.+.++++|+++||+..++.++.....
T Consensus 164 VVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~ 243 (414)
T PTZ00280 164 VIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYD 243 (414)
T ss_pred EEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998888777666778999999999999999887776543
Q ss_pred cC-CCcceeEEcCC---C--cEEeeCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCChhHHHHhhcCceeccCCc
Q 017115 234 SS-SAVEKSYELPD---G--QVITIGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGST 306 (377)
Q Consensus 234 ~~-~~~~~~~~~~~---~--~~i~v~~~~~~~~e~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s 306 (377)
.. ......|.+|| + ..+.++.+||.++|+||+|++++.. ..+|+++|.++|++||+|.|+.|++||+|+||+|
T Consensus 244 ~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s 323 (414)
T PTZ00280 244 SDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGST 323 (414)
T ss_pred cCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcc
Confidence 21 22345688876 3 3789999999999999999887654 4599999999999999999999999999999999
Q ss_pred CCcChHHHHHHHHHhcC----------------CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCc
Q 017115 307 MFPGIADRMSREITALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPA 370 (377)
Q Consensus 307 ~i~gl~~rl~~eL~~~~----------------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~ 370 (377)
++|||.+||++||++++ |...+++++.++++.+++|+|||++|++.+|+++||||+||+|+|++
T Consensus 324 ~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~ 403 (414)
T PTZ00280 324 MFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPS 403 (414)
T ss_pred cCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhccChH
Confidence 99999999999999986 34567899999989999999999999999999999999999999999
Q ss_pred ccccc
Q 017115 371 IVHRK 375 (377)
Q Consensus 371 ~~~~k 375 (377)
+++||
T Consensus 404 i~~~~ 408 (414)
T PTZ00280 404 ICRYN 408 (414)
T ss_pred heeec
Confidence 99886
No 7
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=5.9e-75 Score=558.00 Aligned_cols=368 Identities=52% Similarity=0.973 Sum_probs=323.1
Q ss_pred CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHHH
Q 017115 4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 4 ~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~ 83 (377)
+++.++||||+||+++|+||+|++.|+.++|++++++..... ..++++|++.........+++|+++|.+.||+.
T Consensus 1 ~d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 75 (393)
T PF00022_consen 1 GDENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNS-----SNDYYVGDEALSPRSNLELRSPIENGVIVDWDA 75 (393)
T ss_dssp -TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSS-----SSSCEETHHHHHTGTGEEEEESEETTEESSHHH
T ss_pred CCCCCEEEEECCCceEEEEECCCCCCCCcCCCcccccccccc-----ceeEEeecccccchhheeeeeeccccccccccc
Confidence 478999999999999999999999999999999998776532 125778988666566678999999999999999
Q ss_pred HHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCceE
Q 017115 84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 163 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 163 (377)
++.+|+++|.+.|..++++++|++++|+++++..|+.+++++||.+++++++++++++||+|++|.++|||||+|++.|+
T Consensus 76 ~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~ 155 (393)
T PF00022_consen 76 LEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTS 155 (393)
T ss_dssp HHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EE
T ss_pred cccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeee
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCC-----------------cchhHHHHHHHHHHhcceeecCHH
Q 017115 164 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSF-----------------TTTAEREIVRDMKEKLAYVALDYE 226 (377)
Q Consensus 164 v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~-----------------~~~~~~~~~~~ik~~~~~v~~~~~ 226 (377)
|+||+||+++.++..++++||++++++|+++|.+++... ....+...++++|++.|+++.++.
T Consensus 156 v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~ 235 (393)
T PF00022_consen 156 VVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPD 235 (393)
T ss_dssp EEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHH
T ss_pred eeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccc
Confidence 999999999999999999999999999999999864332 233467889999999999999887
Q ss_pred HHHHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCccCCCCCC-------ChHHHHHHHHhcCChhHHHHhhcCc
Q 017115 227 QELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAA-------GIHETTYNSIMKCDVDIRKDLYGNI 299 (377)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~-------~l~~~I~~~i~~~~~~~~~~l~~nI 299 (377)
... ...........|.+|||+.+.++.+|+.++|+||+|+..+.+.. +|+++|.++|.+||.|.|+.|++||
T Consensus 236 ~~~-~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nI 314 (393)
T PF00022_consen 236 EEQ-EEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNI 314 (393)
T ss_dssp HHH-HHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTE
T ss_pred ccc-ccccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccce
Confidence 511 11122456788999999999999999999999999999887766 9999999999999999999999999
Q ss_pred eeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCC-CCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017115 300 VLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPP-ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF 377 (377)
Q Consensus 300 vl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~-~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
+||||+|++|||.+||++||.++.|...+++++.++ +|.+++|+|||++|++.+|+++||||+||+|+|+++++||||
T Consensus 315 vl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 315 VLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp EEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred EEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 999999999999999999999999988899999999 999999999999999999999999999999999999999997
No 8
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=1.1e-73 Score=544.92 Aligned_cols=369 Identities=68% Similarity=1.185 Sum_probs=339.3
Q ss_pred CCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHHHHHHH
Q 017115 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKI 87 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~~~ 87 (377)
++||||+||++||+||++++.|++++||+++++++.....+ ....+++|+++....+...+++|+++|.+.||+.++.+
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~-~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i 80 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVG-DAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKI 80 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccC-CCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHH
Confidence 58999999999999999999999999999998865432111 23467899998766666689999999999999999999
Q ss_pred HHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCceEEEEe
Q 017115 88 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 167 (377)
Q Consensus 88 ~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~~v 167 (377)
|+++|.+.|+.++.++|+++++|.+++...|+.+++++||.++++++++++++++|+|++|.++|+|||+|+++|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv 160 (373)
T smart00268 81 WDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPV 160 (373)
T ss_pred HHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEE
Confidence 99999778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhcc---CCCcceeEEc
Q 017115 168 YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKS---SSAVEKSYEL 244 (377)
Q Consensus 168 ~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~ 244 (377)
+||.++.++..++++||++++++|.++|++++..+....+.+.++++|+++|++..++.++++.... .......|.+
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (373)
T smart00268 161 VDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYEL 240 (373)
T ss_pred ECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEEC
Confidence 9999999999999999999999999999886656655667789999999999999998877664432 2345678999
Q ss_pred CCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCC
Q 017115 245 PDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAP 324 (377)
Q Consensus 245 ~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~ 324 (377)
|||..+.++.+|+.++|+||+|+.++.+..+|+++|.++|.+||.|.|+.+++||+||||+|++|||.+||++||+++.|
T Consensus 241 pdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p 320 (373)
T smart00268 241 PDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAP 320 (373)
T ss_pred CCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCC
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017115 325 SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF 377 (377)
Q Consensus 325 ~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
...++++..++++.+++|.|||++|++++|.++||||+||+|+|+++++||||
T Consensus 321 ~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 321 KKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred CCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 88889999999999999999999999999999999999999999999999997
No 9
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=2.2e-72 Score=499.56 Aligned_cols=368 Identities=41% Similarity=0.760 Sum_probs=318.9
Q ss_pred CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceecccccc-ccccceeeceecCCccCCHH
Q 017115 4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWD 82 (377)
Q Consensus 4 ~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~-~~~~~~~~~p~~~g~i~d~~ 82 (377)
++|...||||+||+++|+||+|++.|++++|+.++.....+.-. .+.+.++++.++.. .+....++.|+++|.+.|||
T Consensus 8 gdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~-~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dWD 86 (426)
T KOG0679|consen 8 GDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDA-EDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDWD 86 (426)
T ss_pred ccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCcc-ccccceEeechhccCCCCCCeeccchhcCCcccHH
Confidence 67889999999999999999999999999999998632221111 12334678877754 35556889999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCce
Q 017115 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t 162 (377)
.++.+|+|.|.++|+.+|.++|+++++|+++++..|++++|.+||.+++|+++++..++|++|+.|+.||||||||+++|
T Consensus 87 ~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~~ 166 (426)
T KOG0679|consen 87 LFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATHT 166 (426)
T ss_pred HHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCCc
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchh---------------------------------HHH
Q 017115 163 HTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTA---------------------------------ERE 209 (377)
Q Consensus 163 ~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~---------------------------------~~~ 209 (377)
+|+||+||+++.+++++.++||+.|+..+++.|+.+++++.+.. ...
T Consensus 167 svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~ 246 (426)
T KOG0679|consen 167 SVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQR 246 (426)
T ss_pred eeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877654210 012
Q ss_pred HHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCccCC------------CCCCChH
Q 017115 210 IVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIG------------MEAAGIH 277 (377)
Q Consensus 210 ~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~------------~~~~~l~ 277 (377)
.++++|++.+.+...+-.+.. .....+++|++|||....++.+||+++|.||.|++.. ....|++
T Consensus 247 v~~e~ke~v~qv~dtp~de~~---~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~~ 323 (426)
T KOG0679|consen 247 VYQEFKESVLQVSDTPFDEEV---AAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGLP 323 (426)
T ss_pred HHHHHHHHHHhccCCCCcccc---cccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCch
Confidence 355555555555422211111 1124678999999999999999999999999998752 2356899
Q ss_pred HHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCC---CCccccchhhhhhhccccc
Q 017115 278 ETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTF 354 (377)
Q Consensus 278 ~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~---~~~~~~w~Gasi~a~l~~~ 354 (377)
+++..+|..||+|+|..|+.|||+|||+|.|+||.+||+.||+.+.|.. +++++... ++.+++|+||||+|+|++|
T Consensus 324 ~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgtF 402 (426)
T KOG0679|consen 324 HLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGTF 402 (426)
T ss_pred HHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhccccH
Confidence 9999999999999999999999999999999999999999999999997 89998764 7899999999999999999
Q ss_pred ccccccHHHHhhcCC-ccccccc
Q 017115 355 QQMWISKGEYDESGP-AIVHRKC 376 (377)
Q Consensus 355 ~~~~itr~~y~e~G~-~~~~~k~ 376 (377)
..+|++|+||+|.|. +.+.|||
T Consensus 403 qq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 403 QQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred HHHhhhHHHHHHhhhHHHHhhcC
Confidence 999999999999999 8899998
No 10
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=3.6e-71 Score=527.04 Aligned_cols=367 Identities=71% Similarity=1.206 Sum_probs=335.7
Q ss_pred CEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceecccccccccc-ceeeceecCCccCCHHHHHHH
Q 017115 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDMEKI 87 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~p~~~g~i~d~~~~~~~ 87 (377)
+||||+||+++|+||++++.|++++||++++++......+.+...+++|+++....+. ..+++|+++|.+.||+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 6899999999999999999999999999998876543333345678999998776553 789999999999999999999
Q ss_pred HHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCceEEEEe
Q 017115 88 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 167 (377)
Q Consensus 88 ~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~~v 167 (377)
|+++|.+.|..+++++++++++|+++++..|+.+++++||.++++++++++++++|+|++|.++|+|||+|+++|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv 160 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPV 160 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEE
Confidence 99999888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHH-hccCCCcceeEEcCC
Q 017115 168 YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEA-AKSSSAVEKSYELPD 246 (377)
Q Consensus 168 ~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~ 246 (377)
+||+++.++..++++||+++++++.++|.+++..+....+...++++|+++|+++.++.++... ..........|.+||
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd 240 (371)
T cd00012 161 YDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPD 240 (371)
T ss_pred ECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCC
Confidence 9999999989999999999999999999888876666677889999999999999988766522 222334567899999
Q ss_pred CcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCC-
Q 017115 247 GQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPS- 325 (377)
Q Consensus 247 ~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~- 325 (377)
+..+.++.+|+.++|+||.|+..+....+|++.|.++|..||.+.|+.+++||+||||+|++|||.+||+++|..+.|.
T Consensus 241 ~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~ 320 (371)
T cd00012 241 GRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPS 320 (371)
T ss_pred CeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcc
Confidence 9999999999999999999998888889999999999999999999999999999999999999999999999999987
Q ss_pred -CceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccc
Q 017115 326 -SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRK 375 (377)
Q Consensus 326 -~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k 375 (377)
...+++...++|.+++|.|||++|++.+|+++||||+||+|+|+++++||
T Consensus 321 ~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 321 KDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred cceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 56678888889999999999999999999999999999999999999987
No 11
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=9.9e-71 Score=465.13 Aligned_cols=371 Identities=50% Similarity=0.916 Sum_probs=344.6
Q ss_pred CCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCc-cccC-CCccceeccccccccccceeeceecCCccCCHH
Q 017115 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV-MVGM-GQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD 82 (377)
Q Consensus 5 ~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~-~~~~-~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~ 82 (377)
++.++||.|+||.++|+||+|++-|.+++|+.+++|--... ..+. .-++..||+++.+.++..++.||+++|.+.||+
T Consensus 2 d~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwd 81 (389)
T KOG0677|consen 2 DSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWD 81 (389)
T ss_pred CCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChH
Confidence 45899999999999999999999999999999999743221 1221 236788999999888889999999999999999
Q ss_pred HHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCce
Q 017115 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t 162 (377)
+++++|+|.|.++|++++.+.++++++||++|...|+++++..||+++|..+++.-++++++|+.|..+|+|||.|.+.|
T Consensus 82 dM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVT 161 (389)
T KOG0677|consen 82 DMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVT 161 (389)
T ss_pred HHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeE
Q 017115 163 HTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSY 242 (377)
Q Consensus 163 ~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
.|+||++|..+++-..+.+++|++++++|.++|..+|+.+..+++.+.++.+|+++||++-|++.+.+..........+|
T Consensus 162 Hi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y 241 (389)
T KOG0677|consen 162 HIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESY 241 (389)
T ss_pred EEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999988887777777788999
Q ss_pred EcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhc
Q 017115 243 ELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITAL 322 (377)
Q Consensus 243 ~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~ 322 (377)
.+|||..|.++.+||.+||+||+|.+++.+.+++.+++.++|+..++|.|..+.++|+|+||+++-|||..||++||+++
T Consensus 242 tLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkql 321 (389)
T KOG0677|consen 242 TLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQL 321 (389)
T ss_pred ecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CC-----------CCceEEEECCCCCccccchhhhhhhcc-cccccccccHHHHhhcCCcccccc
Q 017115 323 AP-----------SSMKIKVVAPPERKYSVWIGGSILASL-STFQQMWISKGEYDESGPAIVHRK 375 (377)
Q Consensus 323 ~~-----------~~~~v~v~~~~~~~~~~w~Gasi~a~l-~~~~~~~itr~~y~e~G~~~~~~k 375 (377)
.- ...++++-.+|.+..-+|+||+++|.+ ..-+++|+||+||+|.|++.+.+.
T Consensus 322 yl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 322 YLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred HHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 52 235688888999999999999999986 566799999999999999887653
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=7.7e-67 Score=495.47 Aligned_cols=374 Identities=55% Similarity=1.002 Sum_probs=339.1
Q ss_pred CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecC-CCCccccCCCccceeccccccccc--cceeeceecCCccCC
Q 017115 4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-HTGVMVGMGQKDAYVGDEAQSKRG--ILTLKYPIEHGIVSN 80 (377)
Q Consensus 4 ~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~-~~~~~~~~~~~~~~vg~~~~~~~~--~~~~~~p~~~g~i~d 80 (377)
.++.++||||+||+++|+||+|++.|++++|+++++.+ +...+....+.+.++|+++....+ ...+++|+++|.|.|
T Consensus 3 ~~~~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~ 82 (444)
T COG5277 3 GDNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILN 82 (444)
T ss_pred CCCCCeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCC
Confidence 45555699999999999999999999999999999886 444444555778889999877655 678899999999999
Q ss_pred HHHHHHHHHHhhcc--cccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCc--eEEEEe
Q 017115 81 WDDMEKIWHHTFYN--ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT--TGIVLD 156 (377)
Q Consensus 81 ~~~~~~~~~~~~~~--~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~--~~lVVD 156 (377)
|+.++++|+++|.+ .+...+.++|+++++|++++...|+.+++++||.++++++++..++++++|+.|.. +|+|||
T Consensus 83 W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD 162 (444)
T COG5277 83 WDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVID 162 (444)
T ss_pred cHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEE
Confidence 99999999999988 68888999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHH-----cCCCCcch---hHHHHHHHHHHhcc-------ee
Q 017115 157 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTT---AEREIVRDMKEKLA-------YV 221 (377)
Q Consensus 157 iG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~---~~~~~~~~ik~~~~-------~v 221 (377)
+|++.|+|+||+||.++.++..++++||++++.++.++|.. +++.+... .+.++++.+|.+.| |+
T Consensus 163 ~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~ 242 (444)
T COG5277 163 SGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYV 242 (444)
T ss_pred cCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccch
Confidence 99999999999999999999999999999999999999998 66666665 56889999999999 88
Q ss_pred ecCHHHHHHHhcc----------------CCCcceeEEcCCCcEEeeCCc-cccccccCCCCc--cCCCCCCC-------
Q 017115 222 ALDYEQELEAAKS----------------SSAVEKSYELPDGQVITIGAE-RFRCPEVLFQPS--LIGMEAAG------- 275 (377)
Q Consensus 222 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~i~v~~~-~~~~~e~lf~p~--~~~~~~~~------- 275 (377)
..+..+..+.... .......+..|++..+.++.+ ||.+||.+|.|. ..+.+..+
T Consensus 243 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~ 322 (444)
T COG5277 243 SLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQ 322 (444)
T ss_pred hhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhh
Confidence 7776655443322 233556788999999999998 999999999999 66555555
Q ss_pred --------------------hHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCC
Q 017115 276 --------------------IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPP 335 (377)
Q Consensus 276 --------------------l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~ 335 (377)
|++++.++|+.+|.+.|+.|++||+||||+|++|||.+||+.||+.+.|....+++..++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~ 402 (444)
T COG5277 323 ELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPP 402 (444)
T ss_pred hhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCC
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017115 336 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF 377 (377)
Q Consensus 336 ~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
+|.+.+|+|||++|++.+|..+||||+||+|+|+++++++||
T Consensus 403 ~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 403 DPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred chhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 999999999999999999999999999999999999999986
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=1.4e-63 Score=433.05 Aligned_cols=362 Identities=30% Similarity=0.573 Sum_probs=324.2
Q ss_pred CCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccc--cceeeceecCCccCCHHH
Q 017115 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRG--ILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 6 ~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~--~~~~~~p~~~g~i~d~~~ 83 (377)
+.+|||+|+|++++|+|+++.+.|. ++|+|..+.++. .++.++|++..+..+ ...+++|+++|.+.+|+.
T Consensus 2 ~~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~-------~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~t 73 (400)
T KOG0680|consen 2 ETTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFG-------RRRSFLANEIDECKDISSLFYRRPHERGYLVNWDT 73 (400)
T ss_pred CCceEEEcCCceeEEeccCCCCCce-eccchhhhcccc-------cchhhhhhhhhhccCccceEEeehhhcceeEeehh
Confidence 5689999999999999999998897 669998876653 445778887665543 356788999999999999
Q ss_pred HHHHHHHhhccc-ccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhh-c--C--------Cce
Q 017115 84 MEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA-S--G--------RTT 151 (377)
Q Consensus 84 ~~~~~~~~~~~~-L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~-~--g--------~~~ 151 (377)
..++|+++|.+. .+.+..++.+++++|.++-++..+...+++||+++|.++.=...+.++++- + + ...
T Consensus 74 q~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c 153 (400)
T KOG0680|consen 74 QSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSEC 153 (400)
T ss_pred HHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccce
Confidence 999999999654 456678999999999999888899999999999999999999888888875 1 1 137
Q ss_pred EEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHH
Q 017115 152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEA 231 (377)
Q Consensus 152 ~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~ 231 (377)
++|||.|++.|.|+|+++|.+...++.++++||+.+++.|++.+..++.++.. +...++++|++.|||++|+.+.++.
T Consensus 154 ~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmd--ET~vVNeiKEdvcfVSqnF~~~m~~ 231 (400)
T KOG0680|consen 154 CLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMD--ETYVVNEIKEDVCFVSQNFKEDMDI 231 (400)
T ss_pred EEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccc--hhhhhhhhhhheEEechhhHHHHHH
Confidence 89999999999999999999999999999999999999999999888877744 7789999999999999999998876
Q ss_pred hccC---CCcceeEEcCC-------------------CcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCCh
Q 017115 232 AKSS---SAVEKSYELPD-------------------GQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDV 289 (377)
Q Consensus 232 ~~~~---~~~~~~~~~~~-------------------~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~ 289 (377)
+... +.....|.+|| .+.|.+..+||..||+||+|+.+++...||+++|.++|..||.
T Consensus 232 ~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe 311 (400)
T KOG0680|consen 232 AKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPE 311 (400)
T ss_pred HhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHH
Confidence 6543 23456677765 3678889999999999999999999999999999999999999
Q ss_pred hHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCC
Q 017115 290 DIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 369 (377)
Q Consensus 290 ~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~ 369 (377)
++|+.|+.||+++||.+++|||.+||..||++++|.++.++|..+.+|..-+|.||+-++.+++|...||||+||+|+|+
T Consensus 312 ~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~ 391 (400)
T KOG0680|consen 312 EVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGP 391 (400)
T ss_pred HHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccC
Q 017115 370 AIVHRKCF 377 (377)
Q Consensus 370 ~~~~~k~~ 377 (377)
+.+.+|+|
T Consensus 392 ~~~~~~~~ 399 (400)
T KOG0680|consen 392 SWCTKKRF 399 (400)
T ss_pred hhhhhhcc
Confidence 99988875
No 14
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=6.4e-53 Score=388.89 Aligned_cols=363 Identities=28% Similarity=0.576 Sum_probs=311.2
Q ss_pred CCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceecccccccccc-ceeeceecCCccCCHHHHH
Q 017115 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~p~~~g~i~d~~~~~ 85 (377)
..|||||+||+.+|+||+|+..|+.+|++.++++++.... ..-.+||++.....+. ...++||++.+|+||+.+|
T Consensus 23 ~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~~----~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~E 98 (645)
T KOG0681|consen 23 TIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKLG----ASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELME 98 (645)
T ss_pred CCcEEEeCCceeEeecccCCCCccchhhhhhccccccccc----cccccccchhhhhhhhhccCCCCCcCCccccHHHHH
Confidence 5789999999999999999999999999999999865432 1222577765544332 4568999999999999999
Q ss_pred HHHHHhhcccccCCC--CCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhh-cCC---ceEEEEeCCC
Q 017115 86 KIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA-SGR---TTGIVLDSGD 159 (377)
Q Consensus 86 ~~~~~~~~~~L~~~~--~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~-~g~---~~~lVVDiG~ 159 (377)
++++|+| .+|+.+. -+||+++|++..+|...|..+.+.|||.+|+|+|.+--+++.++|. ++. .+|+||++|+
T Consensus 99 ~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~ 177 (645)
T KOG0681|consen 99 QILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGH 177 (645)
T ss_pred HHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCC
Confidence 9999998 8999987 4799999999999999999999999999999999999999999984 333 3699999999
Q ss_pred CceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhcc-----
Q 017115 160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKS----- 234 (377)
Q Consensus 160 ~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~----- 234 (377)
+.|.|.||.||..+.....++++||++...||..+|+.++.-..+...+..++.++..+|+++.||.++..+...
T Consensus 178 ~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~d 257 (645)
T KOG0681|consen 178 SATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYYD 257 (645)
T ss_pred CcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhhh
Confidence 999999999999999999999999999999999999877666555566788999999999999887753321110
Q ss_pred --------------------------------------------------------------------CCCcceeEE---
Q 017115 235 --------------------------------------------------------------------SSAVEKSYE--- 243 (377)
Q Consensus 235 --------------------------------------------------------------------~~~~~~~~~--- 243 (377)
+.+....|.
T Consensus 258 ~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~ll~ 337 (645)
T KOG0681|consen 258 ENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKFPLLN 337 (645)
T ss_pred ccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhchhhc
Confidence 000000000
Q ss_pred c-------------------------------------------------------------------------------
Q 017115 244 L------------------------------------------------------------------------------- 244 (377)
Q Consensus 244 ~------------------------------------------------------------------------------- 244 (377)
+
T Consensus 338 v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~r 417 (645)
T KOG0681|consen 338 VPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQELKDR 417 (645)
T ss_pred chhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 0
Q ss_pred -----------------------------CC-------------------------------------------------
Q 017115 245 -----------------------------PD------------------------------------------------- 246 (377)
Q Consensus 245 -----------------------------~~------------------------------------------------- 246 (377)
+|
T Consensus 418 ~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~d 497 (645)
T KOG0681|consen 418 KSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTTD 497 (645)
T ss_pred hhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCcccccccccccC
Confidence 00
Q ss_pred ------------CcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHH
Q 017115 247 ------------GQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR 314 (377)
Q Consensus 247 ------------~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~r 314 (377)
...+.++.+++++||++|+|+++|.+..||.+++..++++.|.+.++.+.+||+||||+|++||+++|
T Consensus 498 ~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeR 577 (645)
T KOG0681|consen 498 PRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKER 577 (645)
T ss_pred cccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHH
Confidence 02555788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCccccc
Q 017115 315 MSREITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHR 374 (377)
Q Consensus 315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~ 374 (377)
|+.||.++.|..++|.|+.+.+|.+++|.||+.+|.-.+|..-++||+||+|+|++-++.
T Consensus 578 i~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kE 637 (645)
T KOG0681|consen 578 IKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKE 637 (645)
T ss_pred HHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999987654
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=5.4e-51 Score=355.16 Aligned_cols=367 Identities=39% Similarity=0.678 Sum_probs=311.7
Q ss_pred CCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCcc--------ccCCCccceeccccccccccceeeceecCCcc
Q 017115 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM--------VGMGQKDAYVGDEAQSKRGILTLKYPIEHGIV 78 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~--------~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i 78 (377)
+.++|+|+|+.++|.||+|...|.+++|++++.......+ -+..+.+.++|++++. .+.+.+.+|+++|.+
T Consensus 4 ~~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~~ysl~ypiRhg~v 82 (415)
T KOG0678|consen 4 NLPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-ATTYSLKYPIRHGQV 82 (415)
T ss_pred CCceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hcccccccceecccc
Confidence 4459999999999999999999999999998765322211 1223467889999987 557889999999999
Q ss_pred CCHHHHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcC--------Cc
Q 017115 79 SNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG--------RT 150 (377)
Q Consensus 79 ~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g--------~~ 150 (377)
.|||.++++|...+.+.|...|++|--++++|++++.+.|+.++++.||.++++.+++.-++++|+-+.- .-
T Consensus 83 e~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~l 162 (415)
T KOG0678|consen 83 EDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFL 162 (415)
T ss_pred ccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhhee
Confidence 9999999999999999999999999999999999999999999999999999999999999998876542 25
Q ss_pred eEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHH
Q 017115 151 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELE 230 (377)
Q Consensus 151 ~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~ 230 (377)
+|+|||-|.+.|.|.||.+|+++-++++.+++.|++++..+.+++.+++...+.....+.++.+|+++||+.+|.-.+..
T Consensus 163 tG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef~ 242 (415)
T KOG0678|consen 163 TGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEFA 242 (415)
T ss_pred eeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHHH
Confidence 89999999999999999999999999999999999999999999988888887777789999999999999999877765
Q ss_pred HhccCCCcc-e---eEEcCC--CcEEeeCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCChhHHHHhhcCceecc
Q 017115 231 AAKSSSAVE-K---SYELPD--GQVITIGAERFRCPEVLFQPSLIGME-AAGIHETTYNSIMKCDVDIRKDLYGNIVLSG 303 (377)
Q Consensus 231 ~~~~~~~~~-~---~~~~~~--~~~i~v~~~~~~~~e~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~G 303 (377)
+.......- + ....-. ...+.++.+||..+|++|.|.+...+ ...|++.+...|+.||+|.|+.|++||++.|
T Consensus 243 k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivlsg 322 (415)
T KOG0678|consen 243 KYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLSG 322 (415)
T ss_pred HhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhcc
Confidence 544322110 1 111112 23466788999999999999886544 5678999999999999999999999999999
Q ss_pred CCcCCcChHHHHHHHHHhcCC--------------CCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCC
Q 017115 304 GSTMFPGIADRMSREITALAP--------------SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 369 (377)
Q Consensus 304 G~s~i~gl~~rl~~eL~~~~~--------------~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~ 369 (377)
|.+..++|..|++.+++.+.. ....|+++...-..+++|-|++++|+...|-..+=||++|+|+|+
T Consensus 323 gst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g~ 402 (415)
T KOG0678|consen 323 GSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYGP 402 (415)
T ss_pred chHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhCh
Confidence 999999999999988875442 112356666666679999999999999999999999999999999
Q ss_pred ccccc
Q 017115 370 AIVHR 374 (377)
Q Consensus 370 ~~~~~ 374 (377)
+|++.
T Consensus 403 si~r~ 407 (415)
T KOG0678|consen 403 SICRT 407 (415)
T ss_pred hhhhc
Confidence 99875
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=7.2e-40 Score=300.58 Aligned_cols=306 Identities=20% Similarity=0.410 Sum_probs=240.8
Q ss_pred cceeeceecCCccCC----------HHHHHHHHHHhhcccccCCC---CCCcEEEEeCCCCChHHHHHHhhhhccccCCC
Q 017115 66 ILTLKYPIEHGIVSN----------WDDMEKIWHHTFYNELRVAP---EEHPVLLTEAPLNPKANREKMTQIMFETFNVP 132 (377)
Q Consensus 66 ~~~~~~p~~~g~i~d----------~~~~~~~~~~~~~~~L~~~~---~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
.+.+++||++|.+.- .+++.++|+|++.+.|++.+ ..+.+|+++|....+.+.+.+..++|-+++|.
T Consensus 178 ~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~ 257 (618)
T KOG0797|consen 178 PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFN 257 (618)
T ss_pred cceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccc
Confidence 467899999997742 36789999999999999986 46899999999999999999999999999999
Q ss_pred eEEeeehhhhhhhhcCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCC-----CcchhH
Q 017115 133 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYS-----FTTTAE 207 (377)
Q Consensus 133 ~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~-----~~~~~~ 207 (377)
++.++.+++||+|++|.+++||||||+..|+|+||.||..+.++...+++||.+|++.+..+|++.+.. +....+
T Consensus 258 ~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d 337 (618)
T KOG0797|consen 258 SAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPID 337 (618)
T ss_pred eEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999887664 445568
Q ss_pred HHHHHHHHHhcceeecCHHH-HHHHh--ccCCCcceeEEcCCCcEEeeCCccccccccCCCCccC---------------
Q 017115 208 REIVRDMKEKLAYVALDYEQ-ELEAA--KSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLI--------------- 269 (377)
Q Consensus 208 ~~~~~~ik~~~~~v~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~--------------- 269 (377)
+..++++|+++|........ +...+ ..+......| ++.++.+...+|-.||.|.++
T Consensus 338 ~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~ky------tfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q 411 (618)
T KOG0797|consen 338 WLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPPTLKY------TFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQ 411 (618)
T ss_pred HHHHHHHHHHhccccHhhhhhhhhhhhccCCCCcceee------eeeccchhhccchhhhhhhhhhccccccccccccCC
Confidence 99999999999987532111 00000 0111111111 111122222222222222211
Q ss_pred --------------------------------------------------------------------------------
Q 017115 270 -------------------------------------------------------------------------------- 269 (377)
Q Consensus 270 -------------------------------------------------------------------------------- 269 (377)
T Consensus 412 ~d~~d~fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n 491 (618)
T KOG0797|consen 412 PDREDLFDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMN 491 (618)
T ss_pred CCcccccchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhc
Confidence
Q ss_pred ----CC----CCCChHHHHHHHHhcC-ChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCC----ceEEEECCC-
Q 017115 270 ----GM----EAAGIHETTYNSIMKC-DVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSS----MKIKVVAPP- 335 (377)
Q Consensus 270 ----~~----~~~~l~~~I~~~i~~~-~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~----~~v~v~~~~- 335 (377)
-. -...+.+.|..+|..+ ..|.+++|.+.|.++||....||+.+.|++.+....|.. ..|.|+.+|
T Consensus 492 ~~~~~~~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~pr 571 (618)
T KOG0797|consen 492 KKGLYESFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPR 571 (618)
T ss_pred ccceeccccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCc
Confidence 00 0123455677777776 668899999999999999999999999999998877652 247777665
Q ss_pred --CCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017115 336 --ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPAIVHRKCF 377 (377)
Q Consensus 336 --~~~~~~w~Gasi~a~l~~~~~~~itr~~y~e~G~~~~~~k~~ 377 (377)
+|++-+|+||+|+|.++.-.++||++.||.-+|.++++.||+
T Consensus 572 dMdp~~VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 572 DMDPQFVAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred CCCchheEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 899999999999999998899999999999999999999984
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=7.8e-38 Score=294.13 Aligned_cols=306 Identities=19% Similarity=0.255 Sum_probs=234.3
Q ss_pred EEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceecccccccc----ccceeeceecCCccCCHHHHH
Q 017115 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~~~ 85 (377)
++||+||+++|+|++++. +.+..||+++..... ++..++|+++.... ....+++|+++|.+.||+.++
T Consensus 11 vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~-------~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e 82 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT-------GKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATE 82 (335)
T ss_pred eEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC-------CeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHH
Confidence 999999999999998765 456679998875421 23468999987652 346789999999999999999
Q ss_pred HHHHHhhcccccCC-CCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCC
Q 017115 86 KIWHHTFYNELRVA-PEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGD 159 (377)
Q Consensus 86 ~~~~~~~~~~L~~~-~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~ 159 (377)
.+|++++.+.+... ....++++++|..++..+|+.+.+ +||.+|++.++++++|+||++++|. ++++|||+|+
T Consensus 83 ~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~ 161 (335)
T PRK13930 83 AMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGG 161 (335)
T ss_pred HHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCC
Confidence 99999994444432 336789999999999998887777 6799999999999999999999987 5789999999
Q ss_pred CceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcc
Q 017115 160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVE 239 (377)
Q Consensus 160 ~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~ 239 (377)
++|+++++.+|.++ .....++||+++++.+.+++.++ +.+. ...+.+|++|+++|++..+.+.+. ..... ..
T Consensus 162 gttdvs~v~~g~~~--~~~~~~lGG~~id~~l~~~l~~~-~~~~--~~~~~ae~~K~~~~~~~~~~~~~~--~~~~~-~~ 233 (335)
T PRK13930 162 GTTEVAVISLGGIV--YSESIRVAGDEMDEAIVQYVRRK-YNLL--IGERTAEEIKIEIGSAYPLDEEES--MEVRG-RD 233 (335)
T ss_pred CeEEEEEEEeCCEE--eecCcCchhHHHHHHHHHHHHHH-hCCC--CCHHHHHHHHHHhhcCcCCCCCce--EEEEC-cc
Confidence 99999999999988 45668999999999999998754 2221 134679999999998865432110 00000 00
Q ss_pred eeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcC-ceeccCCcCCcChHHHHHHH
Q 017115 240 KSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMSRE 318 (377)
Q Consensus 240 ~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~n-Ivl~GG~s~i~gl~~rl~~e 318 (377)
..+.+|+ .+.++.+++ .|++|.+ ...+.+.|.+++.+++.+.+..+++| |+||||+|++|||.+||+++
T Consensus 234 ~~~~~~~--~~~i~~~~~--~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~ 303 (335)
T PRK13930 234 LVTGLPK--TIEISSEEV--REALAEP------LQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEE 303 (335)
T ss_pred CCCCCCe--eEEECHHHH--HHHHHHH------HHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHH
Confidence 0111121 334444444 3667655 13588889999999999999999987 99999999999999999999
Q ss_pred HHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017115 319 ITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 319 L~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+. +++....+|..++-.||++++.
T Consensus 304 ~~--------~~v~~~~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 304 TG--------LPVHIAEDPLTCVARGTGKALE 327 (335)
T ss_pred HC--------CCceecCCHHHHHHHHHHHHHh
Confidence 84 2333445678899999999874
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=4.7e-36 Score=281.79 Aligned_cols=306 Identities=19% Similarity=0.242 Sum_probs=228.7
Q ss_pred CEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceecccccccc----ccceeeceecCCccCCHHHH
Q 017115 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDDM 84 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~~ 84 (377)
.|+||+||+++|+|+++++. .+.+||+++.++.. ...+++|+++.... ....+.+|+++|.+.||+..
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~-------~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~ 78 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDT-------KKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVT 78 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCC-------CeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHH
Confidence 59999999999999998866 56789999987542 12468999987652 45678899999999999999
Q ss_pred HHHHHHhhcccccCCCCCC-cEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCC
Q 017115 85 EKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSG 158 (377)
Q Consensus 85 ~~~~~~~~~~~L~~~~~~~-~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG 158 (377)
+.+|++++.+.++. ..++ .+++++|..++..+| +.++.+|+.+|++.+.++++|+||++++|. ++++|||+|
T Consensus 79 ~~ll~~~~~~~~~~-~~~~~~~vi~vP~~~~~~~r-~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiG 156 (334)
T PRK13927 79 EKMLKYFIKKVHKN-FRPSPRVVICVPSGITEVER-RAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIG 156 (334)
T ss_pred HHHHHHHHHHHhhc-cCCCCcEEEEeCCCCCHHHH-HHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeC
Confidence 99999999777766 5445 578888866655555 567777899999999999999999999986 467999999
Q ss_pred CCceEEEEe-eCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCC
Q 017115 159 DGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSA 237 (377)
Q Consensus 159 ~~~t~v~~v-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~ 237 (377)
+++|+++++ .+|....+ ..++||++++++|.+++.++. .+. .+.+.++++|+++|++..+.+.. ..... .
T Consensus 157 ggttdvs~v~~~~~~~~~---~~~lGG~~id~~l~~~l~~~~-~~~--~~~~~ae~iK~~~~~~~~~~~~~--~~~~~-~ 227 (334)
T PRK13927 157 GGTTEVAVISLGGIVYSK---SVRVGGDKFDEAIINYVRRNY-NLL--IGERTAERIKIEIGSAYPGDEVL--EMEVR-G 227 (334)
T ss_pred CCeEEEEEEecCCeEeeC---CcCChHHHHHHHHHHHHHHHh-CcC--cCHHHHHHHHHHhhccCCCCCCc--eEEEe-C
Confidence 999999999 66655433 358999999999999886432 221 13467999999999875432100 00000 0
Q ss_pred cceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChHHHHH
Q 017115 238 VEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMS 316 (377)
Q Consensus 238 ~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~gl~~rl~ 316 (377)
....+.+| ..+.++.+++ .|++|.+ ...+.+.|.++|.+++.+.+..+++ +|+||||+|++||+.++|+
T Consensus 228 ~~~~~~~~--~~~~i~~~~~--~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~ 297 (334)
T PRK13927 228 RDLVTGLP--KTITISSNEI--REALQEP------LSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLS 297 (334)
T ss_pred cccCCCCC--eEEEECHHHH--HHHHHHH------HHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHH
Confidence 00001111 1344555554 3666665 1358889999999999888888887 5999999999999999999
Q ss_pred HHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 317 REITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+++. +++....+|..++-.||++++.-
T Consensus 298 ~~~~--------~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 298 EETG--------LPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHC--------CCcEecCCHHHHHHHHHHHHHhh
Confidence 9983 23344456789999999998743
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=1.5e-35 Score=277.90 Aligned_cols=310 Identities=16% Similarity=0.214 Sum_probs=230.9
Q ss_pred EEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccc----cccceeeceecCCccCCHHHHH
Q 017115 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~~~~ 85 (377)
+.||+||.++++...+ ..-.+..||+++..++.+ +.....++||++|... .....+++|+++|.|.||+..+
T Consensus 5 ~giDlGt~~s~i~~~~-~~~~~~~psvv~~~~~~~---~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~ 80 (333)
T TIGR00904 5 IGIDLGTANTLVYVKG-RGIVLNEPSVVAIRTDRD---AKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTE 80 (333)
T ss_pred eEEecCcceEEEEECC-CCEEEecCCEEEEecCCC---CCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHH
Confidence 9999999999986543 223446788887654321 1112346799998775 2456789999999999999999
Q ss_pred HHHHHhhcccccCCCCC-CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCC
Q 017115 86 KIWHHTFYNELRVAPEE-HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGD 159 (377)
Q Consensus 86 ~~~~~~~~~~L~~~~~~-~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~ 159 (377)
.+|++++.+.+...... .++++++|+.++..+|+. ++.+|+.+|++.+.++++|+||++++|. .+++|||+|+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~ 159 (333)
T TIGR00904 81 KMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGG 159 (333)
T ss_pred HHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCC
Confidence 99999997666542222 369999999999999887 5557799999999999999999999987 6789999999
Q ss_pred CceEEEEe-eCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCc
Q 017115 160 GVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAV 238 (377)
Q Consensus 160 ~~t~v~~v-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 238 (377)
++|+++++ .+|..... ..++||+++++.|.+++.++. .. ..+.+.+|++|+++|++..+..++... .. ...
T Consensus 160 gttdvs~v~~~~~~~~~---~~~lGG~did~~l~~~l~~~~-~~--~~~~~~ae~lK~~l~~~~~~~~~~~~~-~~-~~~ 231 (333)
T TIGR00904 160 GTTEVAVISLGGIVVSR---SIRVGGDEFDEAIINYIRRTY-NL--LIGEQTAERIKIEIGSAYPLNDEPRKM-EV-RGR 231 (333)
T ss_pred CeEEEEEEEeCCEEecC---CccchHHHHHHHHHHHHHHHh-cc--cCCHHHHHHHHHHHhccccccccccce-ee-cCc
Confidence 99999999 66655533 348999999999999886432 11 123467999999999876542211100 00 001
Q ss_pred ceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChHHHHHH
Q 017115 239 EKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSR 317 (377)
Q Consensus 239 ~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~gl~~rl~~ 317 (377)
...+.+|++. .++. ..+.|++|.| ..++.+.|.+++.+++.+.+..+++ +|+||||+|++||+.+||++
T Consensus 232 ~~~~~~~~~~--~i~~--~~~~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~ 301 (333)
T TIGR00904 232 DLVTGLPRTI--EITS--VEVREALQEP------VNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSK 301 (333)
T ss_pred cccCCCCeEE--EECH--HHHHHHHHHH------HHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHH
Confidence 1123344433 3332 2466777776 2358888999999999998888986 79999999999999999999
Q ss_pred HHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017115 318 EITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
++. +.+....+|..++-.||++++.
T Consensus 302 ~~~--------~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 302 ETG--------LPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred HHC--------CCceecCChHHHHHHHHHHHHh
Confidence 993 2445556789999999999864
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=2.6e-35 Score=275.66 Aligned_cols=302 Identities=18% Similarity=0.320 Sum_probs=229.1
Q ss_pred CEEEeCCCCceEEeeeCCCCCC-CCCCcceeecCCCCccccCCCccceecccccccc----ccceeeceecCCccCCHHH
Q 017115 9 PLVCDNGTGMVKAGFAGDDAPR-AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P~-~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~ 83 (377)
.+.||+||.++++ |.. ..+. ...||+++..... ..-.+||++|.... +...+.+|+++|.|.||+.
T Consensus 6 ~~giDlGt~~~~i-~~~-~~~~~~~~ps~va~~~~~-------~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~ 76 (335)
T PRK13929 6 EIGIDLGTANILV-YSK-NKGIILNEPSVVAVDTET-------KAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDM 76 (335)
T ss_pred eEEEEcccccEEE-EEC-CCcEEecCCcEEEEECCC-------CeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHH
Confidence 5999999999998 433 2333 3468888764321 12357999997763 4567789999999999999
Q ss_pred HHHHHHHhhcc---cccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcC-----CceEEEE
Q 017115 84 MEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG-----RTTGIVL 155 (377)
Q Consensus 84 ~~~~~~~~~~~---~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~~~lVV 155 (377)
.+.+|++++.+ .++..+...++++++|+.++..+|+.+.+ +++.+|++.+.++++|+||++++| ..+++||
T Consensus 77 ~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvv 155 (335)
T PRK13929 77 TTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVV 155 (335)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEE
Confidence 99999999863 46665656789999999999999999999 779999999999999999999997 4679999
Q ss_pred eCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccC
Q 017115 156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSS 235 (377)
Q Consensus 156 DiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~ 235 (377)
|+|+++|+++++..|..+ .....++||++++++|.+++.+. +.+.. +...+|++|+++|++..+..++. ....
T Consensus 156 DiG~gtt~v~vi~~~~~~--~~~~~~~GG~~id~~l~~~l~~~-~~~~~--~~~~AE~iK~~l~~~~~~~~~~~--~~v~ 228 (335)
T PRK13929 156 DIGGGTTEVAIISFGGVV--SCHSIRIGGDQLDEDIVSFVRKK-YNLLI--GERTAEQVKMEIGYALIEHEPET--MEVR 228 (335)
T ss_pred EeCCCeEEEEEEEeCCEE--EecCcCCHHHHHHHHHHHHHHHH-hCcCc--CHHHHHHHHHHHcCCCCCCCCce--EEEe
Confidence 999999999999555444 23446899999999999998653 22222 34679999999998754421110 0000
Q ss_pred CCcceeEEcCCCcEEeeCCcccc--ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChH
Q 017115 236 SAVEKSYELPDGQVITIGAERFR--CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIA 312 (377)
Q Consensus 236 ~~~~~~~~~~~~~~i~v~~~~~~--~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~gl~ 312 (377)
.....+.+| ..+.++.+++. +.|.+|+ +.+.|.++|.+++.+.+..+++ +|+||||+|++|||.
T Consensus 229 -g~~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~ 295 (335)
T PRK13929 229 -GRDLVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIK 295 (335)
T ss_pred -CCccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHH
Confidence 000011122 35566666665 4566654 8999999999999999999998 699999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEECCCCCccccchhhhhh
Q 017115 313 DRMSREITALAPSSMKIKVVAPPERKYSVWIGGSIL 348 (377)
Q Consensus 313 ~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 348 (377)
+++++++.- .+....+|..++-.|+..+
T Consensus 296 e~l~~~~~~--------~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 296 EWLSEEIVV--------PVHVAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHHHCC--------CceeCCCHHHHHHHHHHHH
Confidence 999999932 3334567889999998776
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=2.5e-33 Score=256.75 Aligned_cols=305 Identities=18% Similarity=0.269 Sum_probs=218.8
Q ss_pred CCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccc----cccceeeceecCCccCCHHH
Q 017115 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWDD 83 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~~ 83 (377)
+.+.||+||.+|++ |..+..=.+..||+++.++.. ..-..+|++|..+ .....+.+|+++|.|.|++.
T Consensus 2 ~~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~-------~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~ 73 (326)
T PF06723_consen 2 KDIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDT-------GKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEA 73 (326)
T ss_dssp SEEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT---------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHH
T ss_pred CceEEecCcccEEE-EECCCCEEEecCcEEEEECCC-------CeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHH
Confidence 45899999999999 444444445568888876653 2335689999776 34578999999999999999
Q ss_pred HHHHHHHhhcccccC-CCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeC
Q 017115 84 MEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDS 157 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~-~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDi 157 (377)
.+.++++++.+..+. ......++++.|...+..+|+.+.+.+ ..+|+..|+++++|+|||+++|. ...+||||
T Consensus 74 ~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDI 152 (326)
T PF06723_consen 74 AEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDI 152 (326)
T ss_dssp HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEE
Confidence 999999999666664 345667999999999999999999998 56999999999999999999984 47899999
Q ss_pred CCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCC
Q 017115 158 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSA 237 (377)
Q Consensus 158 G~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~ 237 (377)
|+++|+++.+..|.++ ....+++||+++++.+.+++++++ ++. ....++|++|.+++++....++. ..
T Consensus 153 G~GtTdiavislggiv--~s~si~~gG~~~DeaI~~~ir~~y-~l~--Ig~~tAE~iK~~~g~~~~~~~~~--~~----- 220 (326)
T PF06723_consen 153 GGGTTDIAVISLGGIV--ASRSIRIGGDDIDEAIIRYIREKY-NLL--IGERTAEKIKIEIGSASPPEEEE--SM----- 220 (326)
T ss_dssp -SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHHHHHH-SEE----HHHHHHHHHHH-BSS--HHHH--EE-----
T ss_pred CCCeEEEEEEECCCEE--EEEEEEecCcchhHHHHHHHHHhh-Ccc--cCHHHHHHHHHhcceeeccCCCc--eE-----
Confidence 9999999999999998 677889999999999999998654 222 35678999999999875432211 10
Q ss_pred cceeEEcCCCc--EEeeC-CccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChHH
Q 017115 238 VEKSYELPDGQ--VITIG-AERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIAD 313 (377)
Q Consensus 238 ~~~~~~~~~~~--~i~v~-~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~gl~~ 313 (377)
.-....+-+|. .+.++ .+-..+.+..+.+ +.+.|.++|.++|+++...+++ +|+||||+|+++||++
T Consensus 221 ~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~---------I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~ 291 (326)
T PF06723_consen 221 EVRGRDLITGLPKSIEITSSEVREAIEPPVDQ---------IVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDE 291 (326)
T ss_dssp EEEEEETTTTCEEEEEEEHHHHHHHHHHHHHH---------HHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHH
T ss_pred EEECccccCCCcEEEEEcHHHHHHHHHHHHHH---------HHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHH
Confidence 01112233332 22333 2223333334333 8999999999999999998775 5999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017115 314 RMSREITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 314 rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+|++++ .+.|...++|..++..|+..+..
T Consensus 292 ~i~~~~--------~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 292 YISEET--------GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHH--------SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHH--------CCCEEEcCCHHHHHHHHHHHHHh
Confidence 999999 34666677889999999877653
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.98 E-value=5.3e-32 Score=254.09 Aligned_cols=305 Identities=18% Similarity=0.275 Sum_probs=219.4
Q ss_pred EEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceecccccccc----ccceeeceecCCccCCHHHHH
Q 017115 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVSNWDDME 85 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~~~ 85 (377)
+.||+||.++++... +..-.+..||.++...+. +...++|++|.... ....+.+|+++|.|.||+..+
T Consensus 6 ~gIDlGt~~~~i~~~-~~~~v~~~psvv~~~~~~-------~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~ 77 (336)
T PRK13928 6 IGIDLGTANVLVYVK-GKGIVLNEPSVVAIDKNT-------NKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTE 77 (336)
T ss_pred eEEEcccccEEEEEC-CCCEEEccCCEEEEECCC-------CeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHH
Confidence 999999999999655 333334568887765332 12357899987652 345667999999999999999
Q ss_pred HHHHHhhcccccCC-CCCCc-EEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCC
Q 017115 86 KIWHHTFYNELRVA-PEEHP-VLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSG 158 (377)
Q Consensus 86 ~~~~~~~~~~L~~~-~~~~~-vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG 158 (377)
++|++++ +.+... ...+| +++++|..++..+|+ .++.+++.+|++.+.++++|+||++++|. .+++|||+|
T Consensus 78 ~~l~~~~-~~~~~~~~~~~p~~vitvP~~~~~~~r~-~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiG 155 (336)
T PRK13928 78 KMLKYFI-NKACGKRFFSKPRIMICIPTGITSVEKR-AVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIG 155 (336)
T ss_pred HHHHHHH-HHHhccCCCCCCeEEEEeCCCCCHHHHH-HHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeC
Confidence 9999998 444333 34566 899998887776555 55555699999999999999999999986 679999999
Q ss_pred CCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCc
Q 017115 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAV 238 (377)
Q Consensus 159 ~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 238 (377)
+++|+++++..|..+. ....++||+++++.|.+++.++. .+. .....+|++|++++.+..+.... ...... .
T Consensus 156 ggttdvsvv~~g~~~~--~~~~~lGG~did~~i~~~l~~~~-~~~--~~~~~ae~lK~~~~~~~~~~~~~--~~~v~g-~ 227 (336)
T PRK13928 156 GGTTDIAVLSLGGIVT--SSSIKVAGDKFDEAIIRYIRKKY-KLL--IGERTAEEIKIKIGTAFPGAREE--EMEIRG-R 227 (336)
T ss_pred CCeEEEEEEEeCCEEE--eCCcCCHHHHHHHHHHHHHHHHh-chh--cCHHHHHHHHHHhcccccccCCc--EEEEec-c
Confidence 9999999999998773 34679999999999999986432 221 13456999999988764321000 000000 0
Q ss_pred ceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChHHHHHH
Q 017115 239 EKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSR 317 (377)
Q Consensus 239 ~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~gl~~rl~~ 317 (377)
.....+|. .+.++.+++. |+++.+ ...+.+.|.+++.+++.+++...++ +|+||||+|++||+.+++++
T Consensus 228 ~~~~~~~~--~~~i~~~~~~--eii~~~------~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~ 297 (336)
T PRK13928 228 DLVTGLPK--TITVTSEEIR--EALKEP------VSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAE 297 (336)
T ss_pred cccCCCce--EEEECHHHHH--HHHHHH------HHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHH
Confidence 00001111 2334433333 444332 1237888899999998888888888 79999999999999999999
Q ss_pred HHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017115 318 EITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
++.. .+....+|..++..||++++.
T Consensus 298 ~~~~--------~v~~~~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 298 ETKV--------PVYIAEDPISCVALGTGKMLE 322 (336)
T ss_pred HHCC--------CceecCCHHHHHHHHHHHHHh
Confidence 9942 333445789999999999864
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.95 E-value=6.9e-28 Score=212.78 Aligned_cols=312 Identities=16% Similarity=0.193 Sum_probs=228.3
Q ss_pred CCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccc----cccceeeceecCCccCCHH
Q 017115 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVSNWD 82 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~ 82 (377)
.+.+.||+||.+|++- ..+..-....||.++...... ...-..+|++|+.+ .+.....+|+++|+|.|++
T Consensus 6 s~diGIDLGTanTlV~-~k~kgIVl~ePSVVAi~~~~~-----~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~ 79 (342)
T COG1077 6 SNDIGIDLGTANTLVY-VKGKGIVLNEPSVVAIESEGK-----TKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFE 79 (342)
T ss_pred cccceeeecccceEEE-EcCceEEecCceEEEEeecCC-----CceEEEehHHHHHHhccCCCCceEEeecCCcEeecHH
Confidence 3589999999999994 434444456788888765311 12346799999887 3446789999999999999
Q ss_pred HHHHHHHHhhcccccCC--CCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEE
Q 017115 83 DMEKIWHHTFYNELRVA--PEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVL 155 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~--~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVV 155 (377)
..+.+++|.+.+..+-. ...-+++++.|...+...|+.+.+.+ +..|...|+++++|.+|++++|. +..+||
T Consensus 80 ~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvv 158 (342)
T COG1077 80 VTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVV 158 (342)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCEEE
Confidence 99999999985444322 23445899999999999999999998 77899999999999999999985 458999
Q ss_pred eCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccC
Q 017115 156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSS 235 (377)
Q Consensus 156 DiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~ 235 (377)
|||+++|.|..+..|-++ ...+..+||+.+++.+..++.+++.-+. ...++|++|.+.+++..+...+..+...
T Consensus 159 DIGgGTTevaVISlggiv--~~~Sirv~GD~~De~Ii~yvr~~~nl~I---Ge~taE~iK~eiG~a~~~~~~~~~~~eV- 232 (342)
T COG1077 159 DIGGGTTEVAVISLGGIV--SSSSVRVGGDKMDEAIIVYVRKKYNLLI---GERTAEKIKIEIGSAYPEEEDEELEMEV- 232 (342)
T ss_pred EeCCCceeEEEEEecCEE--EEeeEEEecchhhHHHHHHHHHHhCeee---cHHHHHHHHHHhcccccccCCccceeeE-
Confidence 999999999999998888 5667899999999999999976543333 3466999999999986532211000000
Q ss_pred CCcceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcC-ceeccCCcCCcChHHH
Q 017115 236 SAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADR 314 (377)
Q Consensus 236 ~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~n-Ivl~GG~s~i~gl~~r 314 (377)
.......-+|....+.-...+....|.+ ..|.+.|...+.++|+++-...+++ +++|||+|.+.||++.
T Consensus 233 ~Grdl~~GlPk~i~i~s~ev~eal~~~v----------~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~ 302 (342)
T COG1077 233 RGRDLVTGLPKTITINSEEIAEALEEPL----------NGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRL 302 (342)
T ss_pred EeeecccCCCeeEEEcHHHHHHHHHHHH----------HHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHh
Confidence 0000000111111111111111222222 3488888999999999999999988 9999999999999999
Q ss_pred HHHHHHhcCCCCceEEEECCCCCccccchhhhhhh
Q 017115 315 MSREITALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
+.++. .+.++-.++|-..+-+|+....
T Consensus 303 i~~et--------~~pv~ia~~pL~~Va~G~G~~l 329 (342)
T COG1077 303 LSEET--------GVPVIIADDPLTCVAKGTGKAL 329 (342)
T ss_pred HHhcc--------CCeEEECCChHHHHHhccchhh
Confidence 99887 4566777788777777865543
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.90 E-value=9e-23 Score=181.44 Aligned_cols=208 Identities=17% Similarity=0.213 Sum_probs=160.2
Q ss_pred eceecCCccCCHHHHHHHHHHhhc---ccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhh
Q 017115 70 KYPIEHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYA 146 (377)
Q Consensus 70 ~~p~~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~ 146 (377)
..|+.+|.|.|++..+.+++++.. +.++ ..-..+++++|..++..+|+.+.+.+ +..|++.+.++.+|+|++++
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g--~~~~~vvisVP~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~ 104 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLG--IELTHAATAIPPGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAV 104 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhC--CCcCcEEEEECCCCCcccHHHHHHHH-HHcCCceEEEeehHHHHHHH
Confidence 578999999999999999999973 2232 23467999999999999998877766 88999999999999999999
Q ss_pred cCCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHH
Q 017115 147 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYE 226 (377)
Q Consensus 147 ~g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~ 226 (377)
++....+|+|+|+++|+++.+.+|.++ .....++||+++++.+.+.+ + .+.+.+|++|.+.+.-
T Consensus 105 ~~~~~~~vvDiGggtt~i~i~~~G~i~--~~~~~~~GG~~it~~Ia~~~---~------i~~~~AE~~K~~~~~~----- 168 (239)
T TIGR02529 105 LQIKNGAVVDVGGGTTGISILKKGKVI--YSADEPTGGTHMSLVLAGAY---G------ISFEEAEEYKRGHKDE----- 168 (239)
T ss_pred hcCCCcEEEEeCCCcEEEEEEECCeEE--EEEeeecchHHHHHHHHHHh---C------CCHHHHHHHHHhcCCH-----
Confidence 888778999999999999999999888 56678999999999988666 2 2346789998875521
Q ss_pred HHHHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCc
Q 017115 227 QELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGST 306 (377)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s 306 (377)
++.. ...+.+.. .+.+.|.+.+.+.+. +.|+||||+|
T Consensus 169 ~~~~---------------------------~~i~~~~~---------~i~~~i~~~l~~~~~-------~~v~LtGG~a 205 (239)
T TIGR02529 169 EEIF---------------------------PVVKPVYQ---------KMASIVKRHIEGQGV-------KDLYLVGGAC 205 (239)
T ss_pred HHHH---------------------------HHHHHHHH---------HHHHHHHHHHHhCCC-------CEEEEECchh
Confidence 1100 00011111 155555666654443 4799999999
Q ss_pred CCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhh
Q 017115 307 MFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSI 347 (377)
Q Consensus 307 ~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi 347 (377)
++||+.+++++.+. +.+..+.+|.+++-+|+++
T Consensus 206 ~ipgl~e~l~~~lg--------~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 206 SFSGFADVFEKQLG--------LNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred cchhHHHHHHHHhC--------CCcccCCCCCeehhheeec
Confidence 99999999999883 2334567899999999864
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.86 E-value=3.5e-20 Score=167.68 Aligned_cols=243 Identities=15% Similarity=0.151 Sum_probs=174.9
Q ss_pred CCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHHHH
Q 017115 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDM 84 (377)
Q Consensus 5 ~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~ 84 (377)
+..-.++||+||+.+|+=.+ +..+. .++ +|+ ..+.+++.|.+.|++..
T Consensus 22 ~~~~~~~iDiGSssi~~vv~-~~~~~-----~~~-----------------~~~---------~~~~~vr~G~i~di~~a 69 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVL-DEDGQ-----PVA-----------------GAL---------EWADVVRDGIVVDFIGA 69 (267)
T ss_pred CCCEEEEEEccCceEEEEEE-cCCCC-----EEE-----------------EEe---------ccccccCCCEEeeHHHH
Confidence 44566999999999997554 32221 111 221 23578999999999998
Q ss_pred HHHHHHhhc---ccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCCCc
Q 017115 85 EKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (377)
Q Consensus 85 ~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 161 (377)
.+.++++.. +.++.. -..++++.|...+...+..+.+.+ +..|++...++.+|.+++.+++...++|||||+++
T Consensus 70 ~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~~~~-~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggt 146 (267)
T PRK15080 70 VTIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAIINVV-ESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGT 146 (267)
T ss_pred HHHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHHHHH-HHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCc
Confidence 888888863 234443 346788899988777777777554 88999999999999999998877778999999999
Q ss_pred eEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCccee
Q 017115 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKS 241 (377)
Q Consensus 162 t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~ 241 (377)
|+++.+.+|.++ .....++||+++++.+.+.+ +. +.+.+|.+|.+... . ++..
T Consensus 147 t~i~v~~~g~~~--~~~~~~~GG~~it~~Ia~~l---~i------~~~eAE~lK~~~~~----~-~~~~----------- 199 (267)
T PRK15080 147 TGISILKDGKVV--YSADEPTGGTHMSLVLAGAY---GI------SFEEAEQYKRDPKH----H-KEIF----------- 199 (267)
T ss_pred EEEEEEECCeEE--EEecccCchHHHHHHHHHHh---CC------CHHHHHHHHhccCC----H-HHHH-----------
Confidence 999999999887 45678999999999998776 22 34668888876431 0 0000
Q ss_pred EEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHh
Q 017115 242 YELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITA 321 (377)
Q Consensus 242 ~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~ 321 (377)
...+.+++. +.+.|.+.+.+. -.+.|+||||+|++||+.+.+++.+..
T Consensus 200 ----------------~ii~~~~~~---------i~~~i~~~l~~~-------~~~~IvLtGG~s~lpgl~e~l~~~lg~ 247 (267)
T PRK15080 200 ----------------PVVKPVVEK---------MASIVARHIEGQ-------DVEDIYLVGGTCCLPGFEEVFEKQTGL 247 (267)
T ss_pred ----------------HHHHHHHHH---------HHHHHHHHHhcC-------CCCEEEEECCcccchhHHHHHHHHhCC
Confidence 000111111 444455555443 335899999999999999999999832
Q ss_pred cCCCCceEEEECCCCCccccchhhhhhh
Q 017115 322 LAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 322 ~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
.+..+++|.+++-+|+++|+
T Consensus 248 --------~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 248 --------PVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred --------CcccCCCchHHHHHHHHhhC
Confidence 23346788999999998874
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.82 E-value=9e-20 Score=183.92 Aligned_cols=297 Identities=18% Similarity=0.215 Sum_probs=179.7
Q ss_pred CCEEEeCCCCceEEeeeCCCCCC--------CCCCcceeecCCCCccccCCCccceeccccccc------cccceeec--
Q 017115 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKY-- 71 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~-- 71 (377)
..|.||+||+++++++..+..|. ..+||+++... ..+.++|+.|... .....+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~---------~~~~~vG~~A~~~~~~~p~~ti~~~Krli 73 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTK---------KGDLLVGQIAKRQAVINPENTFYSVKRFI 73 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcC---------CCCEEECHHHHHhHHhCccceehhhHHhc
Confidence 58999999999999998666554 23445544322 1234566655421 00011111
Q ss_pred --------------ee----------------cCCccCCHHHHHHHHHHhhc---ccccCCCCCCcEEEEeCCCCChHHH
Q 017115 72 --------------PI----------------EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR 118 (377)
Q Consensus 72 --------------p~----------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~ 118 (377)
|+ ....+...+....+++++.. ..++. .-..+|+++|..++..+|
T Consensus 74 G~~~~~~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~--~v~~~VItVPa~f~~~qR 151 (621)
T CHL00094 74 GRKFSEISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGE--TVTQAVITVPAYFNDSQR 151 (621)
T ss_pred CCChHHHHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHH
Confidence 11 11112223444555555532 22332 235699999999999999
Q ss_pred HHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCeec---CcceEEEcccHHHHHHH
Q 017115 119 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYAL---PHAILRLDLAGRDLTDA 190 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~---~~~~~~~~~GG~~i~~~ 190 (377)
+.+.+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++|+.+..+... ..+....++||+++++.
T Consensus 152 ~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~ 230 (621)
T CHL00094 152 QATKDAG-KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKK 230 (621)
T ss_pred HHHHHHH-HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHH
Confidence 9888776 88999999999999999999874 468999999999999988544221 22233468999999999
Q ss_pred HHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcC------CC-cEEe--
Q 017115 191 LMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELP------DG-QVIT-- 251 (377)
Q Consensus 191 l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~i~-- 251 (377)
|.+++.++ +.++.... -...+|.+|..++... ...+.+| ++ ..+.
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~ 294 (621)
T CHL00094 231 IVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLT----------------QTEINLPFITATQTGPKHIEKT 294 (621)
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------ceEEEEeecccCCCCCeeEEEE
Confidence 99877543 22222111 1234566666655211 1111111 01 1222
Q ss_pred eCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEE
Q 017115 252 IGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIK 330 (377)
Q Consensus 252 v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~ 330 (377)
+..++|. ..+.++.. +...|.+++.+. .+...-++.|+|+||+|++|++++.+++.+.. +
T Consensus 295 itR~~fe~l~~~l~~~---------~~~~i~~~L~~a--~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~ 355 (621)
T CHL00094 295 LTRAKFEELCSDLINR---------CRIPVENALKDA--KLDKSDIDEVVLVGGSTRIPAIQELVKKLLGK--------K 355 (621)
T ss_pred EcHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCChhhCcEEEEECCccCChHHHHHHHHHhCC--------C
Confidence 2222222 11112111 334444555443 23344568999999999999999998877632 2
Q ss_pred EECCCCCccccchhhhhhhcc
Q 017115 331 VVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 331 v~~~~~~~~~~w~Gasi~a~l 351 (377)
+....+|+.++..||+++|..
T Consensus 356 ~~~~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 356 PNQSVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred cCcCCCchhHHHhhhHHHHHH
Confidence 334457889999999999875
No 27
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.82 E-value=4.3e-20 Score=185.15 Aligned_cols=300 Identities=21% Similarity=0.218 Sum_probs=180.8
Q ss_pred CEEEeCCCCceEEeeeCCCCCC--------CCCCcceeecCCCCccccCCCccceeccccccc------cccceee----
Q 017115 9 PLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLK---- 70 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~---- 70 (377)
+|.||+||+++.+++..+..|. ..+||+++...+ ...+||..|... .....++
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG 71 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKD---------GGVEVGKEALAAAAEDPKNTISSVKRLMG 71 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCC---------CCEEecHHHHHhhhhChhhhHHHHHHHhC
Confidence 4789999999999988665444 245666654322 235677666432 0000111
Q ss_pred -----------cee--------------cCCccCCHHHHHHHHHHhh---cccccCCCCCCcEEEEeCCCCChHHHHHHh
Q 017115 71 -----------YPI--------------EHGIVSNWDDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREKMT 122 (377)
Q Consensus 71 -----------~p~--------------~~g~i~d~~~~~~~~~~~~---~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~ 122 (377)
+|+ ..+.+...+....+++++. .+.++.. -..+|+++|..++..+|+.+.
T Consensus 72 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~--v~~~VItVPa~f~~~qR~a~~ 149 (599)
T TIGR01991 72 RSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGD--LVGAVITVPAYFDDAQRQATK 149 (599)
T ss_pred CCccchhhcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCC--cceEEEEECCCCCHHHHHHHH
Confidence 122 1222222334444555443 1334332 357999999999999999888
Q ss_pred hhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-cCcceEEEcccHHHHHHHHHHH
Q 017115 123 QIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKI 194 (377)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~~~ 194 (377)
+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.++
T Consensus 150 ~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 228 (599)
T TIGR01991 150 DAA-RLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKW 228 (599)
T ss_pred HHH-HHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 776 88999999999999999998863 4689999999999998774 3422 1122234589999999999999
Q ss_pred HHHc-CCCCcchhH-----HHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCcc
Q 017115 195 LTER-GYSFTTTAE-----REIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSL 268 (377)
Q Consensus 195 l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~ 268 (377)
+.++ +........ ...++..|+.++.- ......+.. +|..+.+.-.|..+ |.++.|-
T Consensus 229 l~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~--------------~~~~i~i~~-~g~~~~~~itr~ef-e~l~~~l- 291 (599)
T TIGR01991 229 ILKQLGISADLNPEDQRLLLQAARAAKEALTDA--------------ESVEVDFTL-DGKDFKGKLTRDEF-EALIQPL- 291 (599)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHHHhCCCC--------------ceEEEEEEE-CCcEEEEEEeHHHH-HHHHHHH-
Confidence 8654 332211111 12344445443321 111122222 23333322222222 2222220
Q ss_pred CCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhh
Q 017115 269 IGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSIL 348 (377)
Q Consensus 269 ~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 348 (377)
...+.+.|.+++.... +...-++.|+|+||+|++|++++.+++.+.. .+....+|+.++..||+++
T Consensus 292 ----l~~i~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~V~~~l~~~f~~--------~~~~~~npdeaVA~GAai~ 357 (599)
T TIGR01991 292 ----VQKTLSICRRALRDAG--LSVEEIKGVVLVGGSTRMPLVRRAVAELFGQ--------EPLTDIDPDQVVALGAAIQ 357 (599)
T ss_pred ----HHHHHHHHHHHHHHcC--CChhhCCEEEEECCcCCChHHHHHHHHHhCC--------CCCCCCCCcHHHHHHHHHH
Confidence 0114445555555432 2334568899999999999999999877632 1234568899999999999
Q ss_pred hcc
Q 017115 349 ASL 351 (377)
Q Consensus 349 a~l 351 (377)
|..
T Consensus 358 a~~ 360 (599)
T TIGR01991 358 ADL 360 (599)
T ss_pred HHH
Confidence 865
No 28
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.82 E-value=1.1e-19 Score=183.81 Aligned_cols=216 Identities=17% Similarity=0.238 Sum_probs=142.4
Q ss_pred CCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-c
Q 017115 102 EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-L 173 (377)
Q Consensus 102 ~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~ 173 (377)
-..+|+++|.+++..+|+.+.+.+ +.+|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+. +|.. +
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKDAG-KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 357999999999999999888776 88999999999999999999875 4789999999999998774 5533 2
Q ss_pred CcceEEEcccHHHHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEE
Q 017115 174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYE 243 (377)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
..+.....+||.++++.|.+++.++ +.++.... -...+|..|+.++.- ......+.
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~--------------~~~~i~i~ 318 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSK--------------TQTEINLP 318 (663)
T ss_pred EecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCC--------------CceEEEEE
Confidence 2233356899999999999888643 22221110 022355556555421 00111111
Q ss_pred --cCC--C-c--EEeeCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHH
Q 017115 244 --LPD--G-Q--VITIGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRM 315 (377)
Q Consensus 244 --~~~--~-~--~i~v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl 315 (377)
..| | . .+.++.+.|. ..+.+|.. +.+.|.+++.+.. +.+.-++.|+|+||+|++|++++.|
T Consensus 319 ~~~~d~~g~~~~~~~itR~efe~l~~~l~~~---------~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l 387 (663)
T PTZ00400 319 FITADQSGPKHLQIKLSRAKLEELTHDLLKK---------TIEPCEKCIKDAG--VKKDELNDVILVGGMTRMPKVSETV 387 (663)
T ss_pred eeccCCCCceEEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHHHCcEEEEECCccCChHHHHHH
Confidence 111 1 1 2233333332 22223222 4555566665442 3344578999999999999999998
Q ss_pred HHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 316 SREITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 316 ~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++.+.. .+....+|+.++..||+++|..
T Consensus 388 ~~~f~~--------~~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 388 KKIFGK--------EPSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred HHHhCC--------CcccCCCCccceeeccHHHHHh
Confidence 877632 2234457889999999999865
No 29
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.82 E-value=8.3e-20 Score=184.66 Aligned_cols=213 Identities=17% Similarity=0.233 Sum_probs=139.4
Q ss_pred CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCe--e-cC
Q 017115 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGY--A-LP 174 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~--~-~~ 174 (377)
..+|+++|..++..+|+.+.+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++++.+.-+. . +.
T Consensus 134 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vl 212 (627)
T PRK00290 134 TEAVITVPAYFNDAQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVL 212 (627)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEE
Confidence 56999999999999999887776 88999999999999999998863 5689999999999998774432 1 22
Q ss_pred cceEEEcccHHHHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEc
Q 017115 175 HAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYEL 244 (377)
Q Consensus 175 ~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 244 (377)
.+....++||.++++.|.+++.++ +.++.... -...++..|+.++.- ....+.+
T Consensus 213 a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~----------------~~~~i~i 276 (627)
T PRK00290 213 STNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSA----------------QQTEINL 276 (627)
T ss_pred EecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CeEEEEE
Confidence 222345899999999999887542 22222111 022355555554421 1111111
Q ss_pred C----C--C-cE--EeeCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHH
Q 017115 245 P----D--G-QV--ITIGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR 314 (377)
Q Consensus 245 ~----~--~-~~--i~v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~r 314 (377)
+ | | .. +.+..+.|. ..+.++.. +.+.|.+++.... +...-++.|+|+||+|++|.++++
T Consensus 277 ~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~---------~~~~i~~~l~~a~--~~~~~id~ViLvGGssriP~v~~~ 345 (627)
T PRK00290 277 PFITADASGPKHLEIKLTRAKFEELTEDLVER---------TIEPCKQALKDAG--LSVSDIDEVILVGGSTRMPAVQEL 345 (627)
T ss_pred eecccCCCCCeEEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CChhhCcEEEEECCcCCChHHHHH
Confidence 1 1 1 12 233333322 11222222 4555556665443 223446889999999999999999
Q ss_pred HHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 315 MSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|++.+.. .+....+|+.++..||+++|..
T Consensus 346 l~~~fg~--------~~~~~~npdeava~GAa~~aa~ 374 (627)
T PRK00290 346 VKEFFGK--------EPNKGVNPDEVVAIGAAIQGGV 374 (627)
T ss_pred HHHHhCC--------CCCcCcCChHHHHHhHHHHHHH
Confidence 9877632 2334557889999999999864
No 30
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.82 E-value=2.1e-19 Score=182.03 Aligned_cols=297 Identities=16% Similarity=0.199 Sum_probs=180.0
Q ss_pred CCEEEeCCCCceEEeeeCCCCCC--------CCCCcceeecCCCCccccCCCccceeccccccc------cccceeec--
Q 017115 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKY-- 71 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~-- 71 (377)
.+|.||+||+++++++..+..|. ..+||+++...+ .+.++|+.|... +....+++
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Krli 110 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKN---------GDRLVGQIAKRQAVVNPENTFFSVKRFI 110 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCC---------CCEEECHHHHHhhhhCchhhhHHHHHhh
Confidence 57999999999999998766554 234555443221 234566655431 00011111
Q ss_pred --------------ee----------------cCCccCCHHHHHHHHHHhhc---ccccCCCCCCcEEEEeCCCCChHHH
Q 017115 72 --------------PI----------------EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR 118 (377)
Q Consensus 72 --------------p~----------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~ 118 (377)
|+ ....+...+....+++++.. +.++. .-..+||++|.+++..+|
T Consensus 111 G~~~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR 188 (673)
T PLN03184 111 GRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLND--KVTKAVITVPAYFNDSQR 188 (673)
T ss_pred CCCcchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHH
Confidence 11 11122223444555555532 23332 235799999999999999
Q ss_pred HHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCee---cCcceEEEcccHHHHHHH
Q 017115 119 EKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYA---LPHAILRLDLAGRDLTDA 190 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~---~~~~~~~~~~GG~~i~~~ 190 (377)
+.+.+.+ +..|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+.-+.. +..+....++||.++++.
T Consensus 189 ~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~ 267 (673)
T PLN03184 189 TATKDAG-RIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 267 (673)
T ss_pred HHHHHHH-HHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHH
Confidence 9887766 88999999999999999998864 46899999999999987743321 122223468999999999
Q ss_pred HHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcC------CC-cEEe--
Q 017115 191 LMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELP------DG-QVIT-- 251 (377)
Q Consensus 191 l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~i~-- 251 (377)
|.+++.++ +.++.... -...+|+.|..++... ...+.++ ++ ..+.
T Consensus 268 L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~ 331 (673)
T PLN03184 268 IVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLT----------------QTSISLPFITATADGPKHIDTT 331 (673)
T ss_pred HHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------cceEEEEeeeccCCCCceEEEE
Confidence 99887643 22221111 0234555665554311 1111111 11 2232
Q ss_pred eCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEE
Q 017115 252 IGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIK 330 (377)
Q Consensus 252 v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~ 330 (377)
+..+.|. ..+.++.. +.+.|.+++..... ...-++.|+|+||+|++|.++++|++.+.. .
T Consensus 332 itR~~fe~l~~~l~~r---------~~~~i~~~L~~a~~--~~~dId~ViLvGGssriP~V~~~i~~~fg~--------~ 392 (673)
T PLN03184 332 LTRAKFEELCSDLLDR---------CKTPVENALRDAKL--SFKDIDEVILVGGSTRIPAVQELVKKLTGK--------D 392 (673)
T ss_pred ECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCC--ChhHccEEEEECCccccHHHHHHHHHHhCC--------C
Confidence 3333322 11222222 44555556654432 234458999999999999999998877632 1
Q ss_pred EECCCCCccccchhhhhhhcc
Q 017115 331 VVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 331 v~~~~~~~~~~w~Gasi~a~l 351 (377)
+....+|+.++..||+++|..
T Consensus 393 ~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 393 PNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred cccccCcchHHHHHHHHHHHH
Confidence 223457789999999999864
No 31
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.81 E-value=1.4e-19 Score=182.28 Aligned_cols=213 Identities=17% Similarity=0.264 Sum_probs=138.9
Q ss_pred CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC------ceEEEEeCCCCceEEEEee--CCee-c
Q 017115 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-L 173 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~v~--~g~~-~ 173 (377)
..+++++|..++..+|+.+.+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++++.+. +|.. +
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v 209 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKDAG-KIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEV 209 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEE
Confidence 56999999999999999888876 88999999999999999998763 4679999999999998774 2322 2
Q ss_pred CcceEEEcccHHHHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEE
Q 017115 174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYE 243 (377)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
..+.....+||.++++.|.+++.++ +.++.... -...+|..|..++.. ....+.
T Consensus 210 ~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~----------------~~~~i~ 273 (595)
T TIGR02350 210 LSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSV----------------LSTEIN 273 (595)
T ss_pred EEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CceEEE
Confidence 2222345799999999999887532 22222110 023455566555421 111111
Q ss_pred cC----C--C-c--EEeeCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHH
Q 017115 244 LP----D--G-Q--VITIGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAD 313 (377)
Q Consensus 244 ~~----~--~-~--~i~v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~ 313 (377)
++ + | . .+.+..+.|. ..+.++.. +.+.|.+++.+.. +...-++.|+|+||+|++|.+++
T Consensus 274 i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~---------~~~~i~~~l~~a~--~~~~~i~~V~LvGGssriP~v~~ 342 (595)
T TIGR02350 274 LPFITADASGPKHLEMTLTRAKFEELTADLVER---------TKEPVRQALKDAG--LSASDIDEVILVGGSTRIPAVQE 342 (595)
T ss_pred eeecccCCCCCeeEEEEEeHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHhHCcEEEEECCcccChHHHH
Confidence 11 1 1 1 2233333322 11222222 4455555555442 23345688999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 314 RMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 314 rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+++.+.. ++....+|+.++..||+++|..
T Consensus 343 ~i~~~f~~--------~~~~~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 343 LVKDFFGK--------EPNKSVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred HHHHHhCC--------cccCCcCcHHHHHHHHHHHHHH
Confidence 98876631 3445567889999999999864
No 32
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.81 E-value=2.9e-19 Score=179.69 Aligned_cols=217 Identities=17% Similarity=0.209 Sum_probs=141.1
Q ss_pred CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-cC
Q 017115 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LP 174 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~ 174 (377)
..+||++|.+++..+|+.+.+.+ +.+|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+. +|.. +.
T Consensus 161 ~~aVITVPayF~~~qR~at~~Aa-~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~ 239 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQATKDAG-TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVK 239 (657)
T ss_pred ceEEEEECCCCChHHHHHHHHHH-HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEE
Confidence 57999999999999999887776 88999999999999999999874 4689999999999998875 6643 22
Q ss_pred cceEEEcccHHHHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEc
Q 017115 175 HAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYEL 244 (377)
Q Consensus 175 ~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 244 (377)
.+.....+||.++++.|.+++.++ +.++.... -...+|+.|..++.... ......+..
T Consensus 240 at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~------------~~i~i~~i~ 307 (657)
T PTZ00186 240 ATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAME------------TEVNLPFIT 307 (657)
T ss_pred EecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCc------------eEEEEeeec
Confidence 222356899999999999887642 22221110 12345666665543210 000111111
Q ss_pred C--CC---cEEeeCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHH
Q 017115 245 P--DG---QVITIGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSRE 318 (377)
Q Consensus 245 ~--~~---~~i~v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~e 318 (377)
. ++ ..+.++.+.|. ..+.++.. +.+.+.+++.... +...-++.|+|+||+|+||.+++.+++.
T Consensus 308 ~~~~g~~~~~~~ItR~efe~l~~~l~~r---------~~~~v~~~L~~a~--~~~~dId~VvLVGGssriP~V~~~l~~~ 376 (657)
T PTZ00186 308 ANADGAQHIQMHISRSKFEGITQRLIER---------SIAPCKQCMKDAG--VELKEINDVVLVGGMTRMPKVVEEVKKF 376 (657)
T ss_pred cCCCCCcceEEEecHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CChhhCCEEEEECCcccChHHHHHHHHH
Confidence 1 11 12333333332 22223222 3444455554332 3344567899999999999999988877
Q ss_pred HHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 319 ITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 319 L~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+.. ......+|+.++..||+++|..
T Consensus 377 fg~--------~~~~~~nPdeaVA~GAAi~a~~ 401 (657)
T PTZ00186 377 FQK--------DPFRGVNPDEAVALGAATLGGV 401 (657)
T ss_pred hCC--------CccccCCCchHHHHhHHHHHHH
Confidence 632 1123457889999999999874
No 33
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.81 E-value=4.1e-19 Score=177.15 Aligned_cols=205 Identities=17% Similarity=0.223 Sum_probs=140.1
Q ss_pred CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-cC
Q 017115 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LP 174 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~ 174 (377)
..+|+++|..++..+|+.+.+.+ +.+|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+. +|.. +.
T Consensus 142 ~~aVITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~ 220 (595)
T PRK01433 142 TKAVITVPAHFNDAARGEVMLAA-KIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVI 220 (595)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEE
Confidence 57999999999999999888776 88999999999999999999874 3579999999999998774 4422 22
Q ss_pred cceEEEcccHHHHHHHHHHHHHHcCCCCcc-hhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeC
Q 017115 175 HAILRLDLAGRDLTDALMKILTERGYSFTT-TAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIG 253 (377)
Q Consensus 175 ~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~-~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~ 253 (377)
.+.....+||.++++.|.+++.++. .... ....+.++..|+.++.-. .+.. ..+.++
T Consensus 221 at~gd~~lGG~d~D~~l~~~~~~~~-~~~~~~~~~~~~ekaK~~LS~~~------------------~~~~---~~~~it 278 (595)
T PRK01433 221 ATNGDNMLGGNDIDVVITQYLCNKF-DLPNSIDTLQLAKKAKETLTYKD------------------SFNN---DNISIN 278 (595)
T ss_pred EEcCCcccChHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCCc------------------cccc---ceEEEc
Confidence 2223457999999999999987542 1111 112234566665544210 0111 134444
Q ss_pred Ccccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEE
Q 017115 254 AERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVV 332 (377)
Q Consensus 254 ~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~ 332 (377)
.+.|. ..+.+|+. +.+.|.+++.... ..-++.|+|+||+|++|.+++.|++.+. .++.
T Consensus 279 r~efe~l~~~l~~~---------~~~~i~~~L~~a~----~~~Id~ViLvGGssriP~v~~~l~~~f~--------~~~~ 337 (595)
T PRK01433 279 KQTLEQLILPLVER---------TINIAQECLEQAG----NPNIDGVILVGGATRIPLIKDELYKAFK--------VDIL 337 (595)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHhhcC----cccCcEEEEECCcccChhHHHHHHHHhC--------CCce
Confidence 43332 22223322 4555555555443 2236889999999999999888887662 1334
Q ss_pred CCCCCccccchhhhhhhcc
Q 017115 333 APPERKYSVWIGGSILASL 351 (377)
Q Consensus 333 ~~~~~~~~~w~Gasi~a~l 351 (377)
...+|+.++..||+++|..
T Consensus 338 ~~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 338 SDIDPDKAVVWGAALQAEN 356 (595)
T ss_pred ecCCchHHHHHHHHHHHHH
Confidence 4568899999999999875
No 34
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.80 E-value=3.6e-19 Score=180.03 Aligned_cols=214 Identities=17% Similarity=0.255 Sum_probs=138.5
Q ss_pred CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC------ceEEEEeCCCCceEEEEee--CCee-c
Q 017115 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-L 173 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~v~--~g~~-~ 173 (377)
..+||++|..++..+|+.+.+.+ +.+|++.+.++++|+|||+++|. .+.+|+|+|+++++|+.+. +|.. +
T Consensus 134 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V 212 (653)
T PRK13411 134 TQAVITVPAYFTDAQRQATKDAG-TIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEV 212 (653)
T ss_pred ceEEEEECCCCCcHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEE
Confidence 56999999999999999888776 88999999999999999998864 3579999999999998763 2322 2
Q ss_pred CcceEEEcccHHHHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEE
Q 017115 174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYE 243 (377)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
..+.....+||.++++.|.+++.++ +.++.... -...+|+.|+.++.- ....+.
T Consensus 213 ~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~----------------~~~~i~ 276 (653)
T PRK13411 213 KATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSM----------------LTTSIN 276 (653)
T ss_pred EEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCC----------------CceEEE
Confidence 2222345799999999999887542 22222111 023345555544421 111111
Q ss_pred c----CC---Cc--EEeeCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHH
Q 017115 244 L----PD---GQ--VITIGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAD 313 (377)
Q Consensus 244 ~----~~---~~--~i~v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~ 313 (377)
+ .+ +. .+.+..+.|. ..+.++.. +.+.|.+++.+. .+...-++.|+|+||+|++|.+++
T Consensus 277 i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a--~~~~~~id~ViLvGGssriP~v~~ 345 (653)
T PRK13411 277 LPFITADETGPKHLEMELTRAKFEELTKDLVEA---------TIEPMQQALKDA--GLKPEDIDRVILVGGSTRIPAVQE 345 (653)
T ss_pred EeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCCHHHCcEEEEECCCCCcchHHH
Confidence 1 11 11 2233333322 11222222 445555555544 334455789999999999999999
Q ss_pred HHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 314 RMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 314 rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.|++.+... .+....+|+.++..||+++|..
T Consensus 346 ~l~~~f~~~-------~~~~~~npdeaVA~GAAi~aa~ 376 (653)
T PRK13411 346 AIQKFFGGK-------QPDRSVNPDEAVALGAAIQAGV 376 (653)
T ss_pred HHHHHcCCc-------CcCCCCCchHHHHHHHHHHHHh
Confidence 988766321 2334457889999999999864
No 35
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.80 E-value=3.5e-19 Score=179.06 Aligned_cols=296 Identities=19% Similarity=0.171 Sum_probs=176.2
Q ss_pred CCCEEEeCCCCceEEeeeCCCCCC--------CCCCcceeecCCCCccccCCCccceeccccccc------cccceee--
Q 017115 7 IQPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLK-- 70 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~~~~P~--------~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~-- 70 (377)
..+|.||+||+++.+++..+..|. ..+||+++... +...+|.+|... .....++
T Consensus 19 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~----------~~~~vG~~A~~~~~~~p~~ti~~~Krl 88 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLE----------DGIEVGYEARANAAQDPKNTISSVKRF 88 (616)
T ss_pred CeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcC----------CCEEEcHHHHHhhHhCchhhHHHHHHH
Confidence 357999999999999998655553 23455554322 225677665431 0000000
Q ss_pred --------------cee--------------cCCccCCHHHHHHHHHHhhc---ccccCCCCCCcEEEEeCCCCChHHHH
Q 017115 71 --------------YPI--------------EHGIVSNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANRE 119 (377)
Q Consensus 71 --------------~p~--------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~p~~~~~~~~~ 119 (377)
+|+ ..+.+...+....+++++.. +.++. .-..+|+++|.+++..+|+
T Consensus 89 iG~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~ 166 (616)
T PRK05183 89 MGRSLADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGG--ELDGAVITVPAYFDDAQRQ 166 (616)
T ss_pred hCCCchhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHH
Confidence 111 11222222333445555431 23432 2357999999999999999
Q ss_pred HHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-cCcceEEEcccHHHHHHHH
Q 017115 120 KMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDAL 191 (377)
Q Consensus 120 ~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l 191 (377)
.+.+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|
T Consensus 167 a~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l 245 (616)
T PRK05183 167 ATKDAA-RLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLL 245 (616)
T ss_pred HHHHHH-HHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHH
Confidence 887776 88999999999999999988763 3579999999999998774 3322 2222334689999999999
Q ss_pred HHHHHHc-CCCCcchhH-----HHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeCCcccc-ccccCC
Q 017115 192 MKILTER-GYSFTTTAE-----REIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFR-CPEVLF 264 (377)
Q Consensus 192 ~~~l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~-~~e~lf 264 (377)
.+++.++ +........ ...++..|+.++.- ....+.+++.. -.++.+.|. ..+.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~----------------~~~~i~i~~~~-~~itr~efe~l~~~l~ 308 (616)
T PRK05183 246 ADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDA----------------DSVEVSVALWQ-GEITREQFNALIAPLV 308 (616)
T ss_pred HHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCCC----------------ceEEEEEecCC-CeEcHHHHHHHHHHHH
Confidence 9988654 222211100 12344444443321 11222222110 012222221 112222
Q ss_pred CCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchh
Q 017115 265 QPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIG 344 (377)
Q Consensus 265 ~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~G 344 (377)
.. +.+.|.+++.+.. +...-++.|+|+||+|++|.+++.|++.+.. .+....+|+.++..|
T Consensus 309 ~~---------~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~npdeaVA~G 369 (616)
T PRK05183 309 KR---------TLLACRRALRDAG--VEADEVKEVVMVGGSTRVPLVREAVGEFFGR--------TPLTSIDPDKVVAIG 369 (616)
T ss_pred HH---------HHHHHHHHHHHcC--CCcccCCEEEEECCcccChHHHHHHHHHhcc--------CcCcCCCchHHHHHH
Confidence 21 4444455554432 2233467899999999999999998876632 123346788999999
Q ss_pred hhhhhcc
Q 017115 345 GSILASL 351 (377)
Q Consensus 345 asi~a~l 351 (377)
|+++|..
T Consensus 370 AAi~a~~ 376 (616)
T PRK05183 370 AAIQADI 376 (616)
T ss_pred HHHHHHH
Confidence 9999874
No 36
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.80 E-value=3.6e-19 Score=179.77 Aligned_cols=213 Identities=18% Similarity=0.233 Sum_probs=137.2
Q ss_pred CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--CCee-cC
Q 017115 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LP 174 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~ 174 (377)
..+||++|..++..+|+.+.+.+ +.+|++.+.++++|+|||+++|. .+.+|+|+|+++++|+.+. +|.. +.
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~ 214 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVK 214 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEE
Confidence 46999999999999999887776 88999999999999999999874 4689999999999998774 3322 22
Q ss_pred cceEEEcccHHHHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEc
Q 017115 175 HAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYEL 244 (377)
Q Consensus 175 ~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 244 (377)
.+.....+||.++++.|.+++.++ +.++.... -...+++.|..++.. ....+.+
T Consensus 215 at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~----------------~~~~i~i 278 (668)
T PRK13410 215 ATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGV----------------SVTDISL 278 (668)
T ss_pred EeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCC----------------CceEEEE
Confidence 223345899999999999887542 22221110 012345555554321 1111211
Q ss_pred C------CC-cEE--eeCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHH
Q 017115 245 P------DG-QVI--TIGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR 314 (377)
Q Consensus 245 ~------~~-~~i--~v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~r 314 (377)
+ ++ ..+ .+..+.|. ..+.++.. +.+.|.+++... .+.+.-++.|+|+||+|++|.+++.
T Consensus 279 ~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r---------~~~~i~~~L~~a--g~~~~dId~VvLVGGssRiP~V~~~ 347 (668)
T PRK13410 279 PFITATEDGPKHIETRLDRKQFESLCGDLLDR---------LLRPVKRALKDA--GLSPEDIDEVVLVGGSTRMPMVQQL 347 (668)
T ss_pred eeeecCCCCCeeEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCChhhCcEEEEECCccccHHHHHH
Confidence 1 11 122 23322222 11222222 444455555432 2334566789999999999988888
Q ss_pred HHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 315 MSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+++.+.. .+....+|+.++..||+++|..
T Consensus 348 l~~~fg~--------~~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 348 VRTLIPR--------EPNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred HHHHcCC--------CcccCCCCchHHHHhHHHHHHh
Confidence 8765521 2234457789999999999875
No 37
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.78 E-value=2.7e-18 Score=173.94 Aligned_cols=214 Identities=16% Similarity=0.225 Sum_probs=140.9
Q ss_pred CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-------ceEEEEeCCCCceEEEEee--CCee-
Q 017115 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGYA- 172 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~v~~v~--~g~~- 172 (377)
..+||++|.+++..+|+.+.+.+ +.+|++.+.++++|+||+++++. .+.+|+|+|+++++|+.+. +|..
T Consensus 141 ~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~ 219 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFE 219 (653)
T ss_pred ceeEEEeCCCCCHHHHHHHHHHH-HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEE
Confidence 57999999999999999888776 88999999999999999998863 4689999999999998764 4432
Q ss_pred cCcceEEEcccHHHHHHHHHHHHHHc------CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCccee
Q 017115 173 LPHAILRLDLAGRDLTDALMKILTER------GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKS 241 (377)
Q Consensus 173 ~~~~~~~~~~GG~~i~~~l~~~l~~~------~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~ 241 (377)
+..+.....+||.++++.|.+++.++ +.++.... -...+|+.|+.++.. ....
T Consensus 220 v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~----------------~~~~ 283 (653)
T PTZ00009 220 VKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSS----------------TQAT 283 (653)
T ss_pred EEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCC----------------ceEE
Confidence 22222245899999999999888642 12221111 023355555544421 1222
Q ss_pred EEc---CCCcEE--eeCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHH
Q 017115 242 YEL---PDGQVI--TIGAERFR-CPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRM 315 (377)
Q Consensus 242 ~~~---~~~~~i--~v~~~~~~-~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl 315 (377)
+.+ .++..+ .+..+.|. ..+.+|.. +.+.|.+++.....+ ..-++.|+|+||+|++|.+++.|
T Consensus 284 i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~v~~~i 352 (653)
T PTZ00009 284 IEIDSLFEGIDYNVTISRARFEELCGDYFRN---------TLQPVEKVLKDAGMD--KRSVHEVVLVGGSTRIPKVQSLI 352 (653)
T ss_pred EEEEeccCCceEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCCC--HHHCcEEEEECCCCCChhHHHHH
Confidence 222 233333 33333332 22223322 455566666655432 34568899999999999999888
Q ss_pred HHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 316 SREITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 316 ~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++.+... ++....+|+.++..||+++|..
T Consensus 353 ~~~f~~~-------~~~~~~npdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 353 KDFFNGK-------EPCKSINPDEAVAYGAAVQAAI 381 (653)
T ss_pred HHHhCCC-------CCCCCCCcchHHhhhhhhhHHH
Confidence 8766321 2334457889999999999864
No 38
>PRK11678 putative chaperone; Provisional
Probab=99.70 E-value=1.5e-16 Score=153.48 Aligned_cols=180 Identities=18% Similarity=0.204 Sum_probs=111.7
Q ss_pred CEEEeCCCCceEEeeeCCCCC--------CCCCCcceeecCCCCc-------------------------------cccC
Q 017115 9 PLVCDNGTGMVKAGFAGDDAP--------RAVFPSIVGRPRHTGV-------------------------------MVGM 49 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~P--------~~~~p~~~~~~~~~~~-------------------------------~~~~ 49 (377)
.+.||+||+++-+++..+..| ...+||.++.+..... ....
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 489999999999999965433 3466777655321000 0011
Q ss_pred CCccceecccccccc----cc----ceeec-----eecCCccCCHHH-HHHHHHHhh---cccccCCCCCCcEEEEeCCC
Q 017115 50 GQKDAYVGDEAQSKR----GI----LTLKY-----PIEHGIVSNWDD-MEKIWHHTF---YNELRVAPEEHPVLLTEAPL 112 (377)
Q Consensus 50 ~~~~~~vg~~~~~~~----~~----~~~~~-----p~~~g~i~d~~~-~~~~~~~~~---~~~L~~~~~~~~vvl~~p~~ 112 (377)
......+|.+|.+.. .. ..+++ ++..+.+..++. +..+|+++- ...++. .-..+||+.|..
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g~--~v~~~VItvPa~ 159 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQA--AITQAVIGRPVN 159 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhCC--CCCcEEEEECCc
Confidence 234567888875431 11 12222 233333333332 234444432 122332 235799999998
Q ss_pred CC-----hHHHHH--HhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCC----------
Q 017115 113 NP-----KANREK--MTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEG---------- 170 (377)
Q Consensus 113 ~~-----~~~~~~--l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g---------- 170 (377)
++ ..+|+. .+.-+.+..|++.+.++++|+||+++++. .+.+|+|+|+++++++.|.=+
T Consensus 160 F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~ 239 (450)
T PRK11678 160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRS 239 (450)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcc
Confidence 76 555543 24445588999999999999999999873 568999999999999887421
Q ss_pred -eecCcceEEEcccHHHHHHHHH
Q 017115 171 -YALPHAILRLDLAGRDLTDALM 192 (377)
Q Consensus 171 -~~~~~~~~~~~~GG~~i~~~l~ 192 (377)
.++.++ -..+||+++++.|.
T Consensus 240 ~~vla~~--G~~lGG~DfD~~L~ 260 (450)
T PRK11678 240 ASLLGHS--GQRIGGNDLDIALA 260 (450)
T ss_pred eeEEecC--CCCCChHHHHHHHH
Confidence 122111 13799999999996
No 39
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.7e-16 Score=153.90 Aligned_cols=311 Identities=18% Similarity=0.183 Sum_probs=179.7
Q ss_pred CCCCEEEeCCCCceEEeeeCCC-CCCCCCCcceeecCCCCccccCCCccceeccccccc------cccceeeceecCC--
Q 017115 6 DIQPLVCDNGTGMVKAGFAGDD-APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKYPIEHG-- 76 (377)
Q Consensus 6 ~~~~vviD~Gs~~~k~G~~~~~-~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~p~~~g-- 76 (377)
-..+|.||+||+++.+++.... .|. ++++..+.+..++...-....+.++|..+... ...+.+++.+..+
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~-vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~ 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPK-VIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCce-EecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC
Confidence 3467999999999999998765 444 33444333222222211112257788877553 1234455555432
Q ss_pred ----------ccCCHH-HHHHHHHHhh---cccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhh
Q 017115 77 ----------IVSNWD-DMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVL 142 (377)
Q Consensus 77 ----------~i~d~~-~~~~~~~~~~---~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~ 142 (377)
..+..+ ....+++++- ...|+. .-..+++++|.+++..+|+.+.+.+ +..|++.+.++++|+|
T Consensus 83 ~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~--~v~~~VItVPayF~d~qR~at~~A~-~iaGl~vlrlinEPtA 159 (579)
T COG0443 83 GLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGE--KVTDAVITVPAYFNDAQRQATKDAA-RIAGLNVLRLINEPTA 159 (579)
T ss_pred CCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCC--CcceEEEEeCCCCCHHHHHHHHHHH-HHcCCCeEEEecchHH
Confidence 112222 2223333321 123332 2367999999999999988777766 8899999999999999
Q ss_pred hhhhcCC-----ceEEEEeCCCCceEEEEeeC--Ce-ecCcceEEEcccHHHHHHHHHHHHHHc----C-CCCcchhH--
Q 017115 143 SLYASGR-----TTGIVLDSGDGVSHTVPIYE--GY-ALPHAILRLDLAGRDLTDALMKILTER----G-YSFTTTAE-- 207 (377)
Q Consensus 143 a~~~~g~-----~~~lVVDiG~~~t~v~~v~~--g~-~~~~~~~~~~~GG~~i~~~l~~~l~~~----~-~~~~~~~~-- 207 (377)
|++++|. ..-+|+|+|+++++++.|.= |. .+........+||++++..|..++..+ + .++.....
T Consensus 160 AAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~ 239 (579)
T COG0443 160 AALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAAL 239 (579)
T ss_pred HHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHH
Confidence 9999985 47899999999999998743 32 233344566899999999999877643 2 23322111
Q ss_pred ---HHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEee--CCccccccccCCCCccCCCCCCChHHHHHH
Q 017115 208 ---REIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITI--GAERFRCPEVLFQPSLIGMEAAGIHETTYN 282 (377)
Q Consensus 208 ---~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v--~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~ 282 (377)
.+.++..|..++.... ....+..-++. +.+ .-.|-.. |.+..+. ...+.+.+.+
T Consensus 240 ~rL~~~ae~aK~~LS~~~~--------------~~i~~~~~~~~-~~~~~~ltR~~~-E~l~~dl-----l~r~~~~~~~ 298 (579)
T COG0443 240 QRLREAAEKAKIELSSATQ--------------TSINLPSIGGD-IDLLKELTRAKF-EELILDL-----LERTIEPVEQ 298 (579)
T ss_pred HHHHHHHHHHHHHcccccc--------------cccchhhcccc-chhhhhhhHHHH-HHHHHHH-----HHHHHHHHHH
Confidence 1344455554443211 11111111111 111 1111111 1121110 0002222222
Q ss_pred HHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 283 SIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 283 ~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++. +..+...-++-|+++||.++||-+.+.+.+.+. . ......+|+.++..||++.|..
T Consensus 299 al~--~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~----~----~~~~~inpdeava~GAa~qa~~ 357 (579)
T COG0443 299 ALK--DAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG----K----EPEKSINPDEAVALGAAIQAAV 357 (579)
T ss_pred HHH--HcCCChhhCceEEEccceeccHHHHHHHHHHhC----c----cccccCCccHHHHHHHHHHHHh
Confidence 332 233344556779999999999966666665553 1 3445567889999999998865
No 40
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.68 E-value=5e-17 Score=164.91 Aligned_cols=218 Identities=20% Similarity=0.262 Sum_probs=134.4
Q ss_pred CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC------ceEEEEeCCCCceEEEEee--CCee-c
Q 017115 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-L 173 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~v~--~g~~-~ 173 (377)
..+++++|..++..+|+.+.+.+ +.+|++.+.++++|.||+++++. .+-+|+|+|+++++++.+. +|.. +
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 46999999999999999888887 88999999999999999987753 4779999999999888774 4533 2
Q ss_pred CcceEEEcccHHHHHHHHHHHHHHc-----CCCCcchh-----HHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEE
Q 017115 174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYE 243 (377)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
........+||.++++.|.+++.++ +.+..... -...++..|+.++.- ......+.
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~--------------~~~~~~~~ 280 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSN--------------DNTEITIS 280 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTS--------------SSSEEEEE
T ss_pred cccccccccccceecceeeccccccccccccccccccccccccccccccccccccccc--------------cccccccc
Confidence 2233456899999999999988642 22222110 022344445444321 01112221
Q ss_pred ----cCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHH
Q 017115 244 ----LPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREI 319 (377)
Q Consensus 244 ----~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL 319 (377)
..++..+.+.-.|-.+. .++.|- ...+.+.|.+++..... ...-++.|+|+||+|++|.+.+.|++.+
T Consensus 281 ~~~~~~~~~~~~~~itr~~fe-~l~~~~-----~~~~~~~i~~~l~~~~~--~~~~i~~V~lvGG~sr~p~v~~~l~~~f 352 (602)
T PF00012_consen 281 IESLYDDGEDFSITITREEFE-ELCEPL-----LERIIEPIEKALKDAGL--KKEDIDSVLLVGGSSRIPYVQEALKELF 352 (602)
T ss_dssp EEEEETTTEEEEEEEEHHHHH-HHTHHH-----HHHTHHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHHHHT
T ss_pred cccccccccccccccccceec-cccccc-----ccccccccccccccccc--cccccceeEEecCcccchhhhhhhhhcc
Confidence 12244333333332221 122220 01155566666654432 2344578999999999998777776655
Q ss_pred HhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 320 ~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
. . .+....+|..++..||+++|..
T Consensus 353 ~----~----~~~~~~~p~~aVA~GAa~~a~~ 376 (602)
T PF00012_consen 353 G----K----KISKSVNPDEAVARGAALYAAI 376 (602)
T ss_dssp T----S----EEB-SS-TTTHHHHHHHHHHHH
T ss_pred c----c----ccccccccccccccccccchhh
Confidence 3 1 3445567889999999999864
No 41
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.63 E-value=8.2e-15 Score=139.60 Aligned_cols=181 Identities=16% Similarity=0.235 Sum_probs=118.0
Q ss_pred ChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHH
Q 017115 114 PKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~ 188 (377)
++...+.+.+.+ +.+|+..+.++.+|+|+++++.. ...+|||+|+++|+++.+.+|.++ .....++||++++
T Consensus 156 ~~~~v~~~~~~~-~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~--~~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVKCV-ERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIR--YTKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHHHH-HHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEE--EEeeecchHHHHH
Confidence 455566666655 88999999999999999987642 357999999999999999999877 4567899999999
Q ss_pred HHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCC---CcEEeeCCcccc-ccccCC
Q 017115 189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPD---GQVITIGAERFR-CPEVLF 264 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~v~~~~~~-~~e~lf 264 (377)
+.+.+.+. ...+.+|++|.+++....+.. .....+.++. +....++...+. ..+..+
T Consensus 233 ~~i~~~l~---------~~~~~AE~lK~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~is~~~l~~ii~~~~ 293 (371)
T TIGR01174 233 KDIAKALR---------TPLEEAERIKIKYGCASIPLE----------GPDENIEIPSVGERPPRSLSRKELAEIIEARA 293 (371)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHeeEecccCC----------CCCCEEEeccCCCCCCeEEcHHHHHHHHHHHH
Confidence 99987651 235779999999987532210 0011122211 111222111111 111111
Q ss_pred CCccCCCCCCChHHHHH-HHHhcCChhHHHHhhcC-ceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECC
Q 017115 265 QPSLIGMEAAGIHETTY-NSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAP 334 (377)
Q Consensus 265 ~p~~~~~~~~~l~~~I~-~~i~~~~~~~~~~l~~n-Ivl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~ 334 (377)
+ .+.+.|. +.+.+.+.. .-+.+ |+||||+|++||+.+++.+.+.. ++++..|
T Consensus 294 ~---------ei~~~i~~~~L~~~~~~---~~i~~gIvLtGG~S~ipgi~~~l~~~~~~------~vr~~~P 347 (371)
T TIGR01174 294 E---------EILEIVKQKELRKSGFK---EELNGGIVLTGGGAQLEGIVELAEKVFDN------PVRIGLP 347 (371)
T ss_pred H---------HHHHHHHHHHHHhcCCc---ccCCCEEEEeChHHcccCHHHHHHHHhCC------CeEEECC
Confidence 1 1444554 555544332 22344 99999999999999999998843 4555544
No 42
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.62 E-value=4e-14 Score=136.64 Aligned_cols=202 Identities=18% Similarity=0.209 Sum_probs=134.2
Q ss_pred ChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHH
Q 017115 114 PKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~ 188 (377)
+....+.+.+ +++..|+....++.+|+|+++++.. ...+|||+|+++|+++.+.+|.++ .....++||++++
T Consensus 164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it 240 (420)
T PRK09472 164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVT 240 (420)
T ss_pred chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHH
Confidence 3444555666 5589999999999999999998753 358999999999999999999888 7778999999999
Q ss_pred HHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcC--CC-cEEeeCCccccccccCCC
Q 017115 189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELP--DG-QVITIGAERFRCPEVLFQ 265 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~i~v~~~~~~~~e~lf~ 265 (377)
+.+...+. ...+.+|++|.+++....+... ....+.++ ++ ....++ +....+++..
T Consensus 241 ~dIa~~l~---------i~~~~AE~lK~~~g~~~~~~~~----------~~~~i~v~~~~~~~~~~i~--~~~l~~ii~~ 299 (420)
T PRK09472 241 SDIAYAFG---------TPPSDAEAIKVRHGCALGSIVG----------KDESVEVPSVGGRPPRSLQ--RQTLAEVIEP 299 (420)
T ss_pred HHHHHHhC---------cCHHHHHHHHHhcceeccccCC----------CCceeEecCCCCCCCeEEc--HHHHHHHHHH
Confidence 99987662 2346799999988865322100 01112221 11 101111 1111111111
Q ss_pred CccCCCCCCChHHHHHHHHhcCChhHHH-----HhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECC------
Q 017115 266 PSLIGMEAAGIHETTYNSIMKCDVDIRK-----DLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAP------ 334 (377)
Q Consensus 266 p~~~~~~~~~l~~~I~~~i~~~~~~~~~-----~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~------ 334 (377)
....|.+.|.+++..++..++. .+.+.|+||||+|+|||+.+.+++.+.. ++++..|
T Consensus 300 ------r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~ 367 (420)
T PRK09472 300 ------RYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGL 367 (420)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCC
Confidence 0111444555666555544443 3556799999999999999999988842 3455433
Q ss_pred ----CCCccccchhhhhhhcc
Q 017115 335 ----PERKYSVWIGGSILASL 351 (377)
Q Consensus 335 ----~~~~~~~w~Gasi~a~l 351 (377)
.+|.|++-.|...|+.-
T Consensus 368 ~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 368 TDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred hhhcCCcHHHHHHHHHHHhhh
Confidence 36789999999888763
No 43
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.58 E-value=3.8e-14 Score=133.74 Aligned_cols=201 Identities=19% Similarity=0.267 Sum_probs=136.8
Q ss_pred ChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHH
Q 017115 114 PKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~ 188 (377)
+....+.|.+++ |+.|.....++-+|+|++.+.-. -++++||+|+++|+|+.+.+|.+. +...+|+||+++|
T Consensus 163 ~~~~~~Nl~k~v-~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~--~~~~ipvgG~~vT 239 (418)
T COG0849 163 PKNILENLEKCV-ERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALR--YTGVIPVGGDHVT 239 (418)
T ss_pred chHHHHHHHHHH-HHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEE--EEeeEeeCccHHH
Confidence 556667777776 99999999999999999987643 479999999999999999999998 6777899999999
Q ss_pred HHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCC--CcEEeeCCccccccccCCCC
Q 017115 189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPD--GQVITIGAERFRCPEVLFQP 266 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~~~~~~e~lf~p 266 (377)
+.+...| ..+.+.+|++|.+++....+.. .....++.|. +.. ...-.+....+++-
T Consensus 240 ~DIa~~l---------~t~~~~AE~iK~~~g~a~~~~~----------~~~~~i~v~~vg~~~-~~~~t~~~ls~II~-- 297 (418)
T COG0849 240 KDIAKGL---------KTPFEEAERIKIKYGSALISLA----------DDEETIEVPSVGSDI-PRQVTRSELSEIIE-- 297 (418)
T ss_pred HHHHHHh---------CCCHHHHHHHHHHcCccccCcC----------CCcceEecccCCCcc-cchhhHHHHHHHHH--
Confidence 9999888 2356779999999987643321 0111222211 111 00011111111110
Q ss_pred ccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECC----------CC
Q 017115 267 SLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAP----------PE 336 (377)
Q Consensus 267 ~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~----------~~ 336 (377)
.....+.+++...|++.-.. ..+...|+||||++++||+.+-.+.-+.. ++++..| .+
T Consensus 298 ----aR~~Ei~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~------~vRig~P~~~~Gl~d~~~~ 365 (418)
T COG0849 298 ----ARVEEILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGR------PVRLGVPLNIVGLTDIARN 365 (418)
T ss_pred ----hhHHHHHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCC------ceEeCCCccccCchhhccC
Confidence 00111334555555544322 56668899999999999999888766643 3444433 35
Q ss_pred Cccccchhhhhhhcc
Q 017115 337 RKYSVWIGGSILASL 351 (377)
Q Consensus 337 ~~~~~w~Gasi~a~l 351 (377)
|.|++-.|.-.|+..
T Consensus 366 p~fs~avGl~~~~~~ 380 (418)
T COG0849 366 PAFSTAVGLLLYGAL 380 (418)
T ss_pred chhhhhHHHHHHHhh
Confidence 899999999888875
No 44
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.8e-13 Score=121.52 Aligned_cols=214 Identities=18% Similarity=0.237 Sum_probs=129.2
Q ss_pred CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC------ceEEEEeCCCCceEEE--EeeCCee-c
Q 017115 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTV--PIYEGYA-L 173 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~--~v~~g~~-~ 173 (377)
...|+++|.+++..+|+...+ +--..|.+.+.++++|.+|+.++|. .+-+|.|+|+++.+|+ -|-+|.- +
T Consensus 173 ~~AVvTvPAYFNDAQrQATKD-AGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeV 251 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQATKD-AGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEV 251 (663)
T ss_pred cceEEecchhcchHHHhhhcc-cceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEE
Confidence 458999999999999885544 4467899999999999999999974 5789999999997766 5566643 2
Q ss_pred CcceEEEcccHHHHHHHHHHHHHH-----cCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCc
Q 017115 174 PHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQ 248 (377)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (377)
........+||.++++++++++.+ .+.++.. +...+.+++++.- ..+-..++......++
T Consensus 252 laTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~k--dnkA~~KLrRe~E---------kAKRaLSsqhq~riEI---- 316 (663)
T KOG0100|consen 252 LATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRK--DNKAVQKLRREVE---------KAKRALSSQHQVRIEI---- 316 (663)
T ss_pred EecCCCcccCccchHHHHHHHHHHHHhhhcCCccch--hhHHHHHHHHHHH---------HHHhhhccccceEEee----
Confidence 333345689999999998877643 2444432 4444555544211 1111111222233332
Q ss_pred EEeeCCccccccccCCCCccCCCC---------CCChHHHHHHHHhcC--ChhHHHHhhcCceeccCCcCCcChHHHHHH
Q 017115 249 VITIGAERFRCPEVLFQPSLIGME---------AAGIHETTYNSIMKC--DVDIRKDLYGNIVLSGGSTMFPGIADRMSR 317 (377)
Q Consensus 249 ~i~v~~~~~~~~e~lf~p~~~~~~---------~~~l~~~I~~~i~~~--~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~ 317 (377)
|.||....++.. ...|-..-.+-+++. +.++++.-++-|+|+||+++|| .+++
T Consensus 317 ------------eS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIP----KvQq 380 (663)
T KOG0100|consen 317 ------------ESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIP----KVQQ 380 (663)
T ss_pred ------------eeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccCh----hHHH
Confidence 444443222110 001111111112222 5667777888999999999999 4555
Q ss_pred HHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
-|+..+.-. +....-+|+-++..||++-|-.
T Consensus 381 llk~fF~GK---epskGinPdEAVAYGAAVQaGv 411 (663)
T KOG0100|consen 381 LLKDFFNGK---EPSKGINPDEAVAYGAAVQAGV 411 (663)
T ss_pred HHHHHhCCC---CccCCCChHHHHHhhhhhhhcc
Confidence 555544221 1112235677788888776643
No 45
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.45 E-value=3.8e-14 Score=117.05 Aligned_cols=236 Identities=17% Similarity=0.189 Sum_probs=153.7
Q ss_pred CCCCCEEEeCCCCceEEeeeC-CCCCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHH-
Q 017115 5 EDIQPLVCDNGTGMVKAGFAG-DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD- 82 (377)
Q Consensus 5 ~~~~~vviD~Gs~~~k~G~~~-~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~- 82 (377)
+..-.+.+|+||..+..=.-. +..|-.. ..+...-+++|.+.||-
T Consensus 27 ~sk~~vGVDLGT~~iV~~vlD~d~~Pvag---------------------------------~~~~advVRDGiVvdf~e 73 (277)
T COG4820 27 ESKLWVGVDLGTCDIVSMVLDRDGQPVAG---------------------------------CLDWADVVRDGIVVDFFE 73 (277)
T ss_pred cCceEEEeecccceEEEEEEcCCCCeEEE---------------------------------EehhhhhhccceEEehhh
Confidence 345668999999998864443 3344211 01122345778887762
Q ss_pred ---HHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCceEEEEeCCC
Q 017115 83 ---DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGD 159 (377)
Q Consensus 83 ---~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~ 159 (377)
.++++.+.+ .++|++... ..--+.||.......+....+ .|..|...++.+++|.|+++-.+.++|-|||+|+
T Consensus 74 aveiVrrlkd~l-Ek~lGi~~t--ha~taiPPGt~~~~~ri~iNV-iESAGlevl~vlDEPTAaa~vL~l~dg~VVDiGG 149 (277)
T COG4820 74 AVEIVRRLKDTL-EKQLGIRFT--HAATAIPPGTEQGDPRISINV-IESAGLEVLHVLDEPTAAADVLQLDDGGVVDIGG 149 (277)
T ss_pred HHHHHHHHHHHH-HHhhCeEee--eccccCCCCccCCCceEEEEe-ecccCceeeeecCCchhHHHHhccCCCcEEEeCC
Confidence 334444444 577887542 223344555533333434444 4999999999999999999999999999999999
Q ss_pred CceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcc
Q 017115 160 GVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVE 239 (377)
Q Consensus 160 ~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~ 239 (377)
++|-|+.+-+|.++ ....-+.||.|++-.|+... ++ +.+.+|++|+..---.
T Consensus 150 GTTGIsi~kkGkVi--y~ADEpTGGtHmtLvlAG~y---gi------~~EeAE~~Kr~~k~~~----------------- 201 (277)
T COG4820 150 GTTGISIVKKGKVI--YSADEPTGGTHMTLVLAGNY---GI------SLEEAEQYKRGHKKGE----------------- 201 (277)
T ss_pred CcceeEEEEcCcEE--EeccCCCCceeEEEEEeccc---Cc------CHhHHHHhhhccccch-----------------
Confidence 99999999999999 44556999998887665332 33 3456787776431100
Q ss_pred eeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHH
Q 017115 240 KSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREI 319 (377)
Q Consensus 240 ~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL 319 (377)
+-|......++. +.+.+.+-|...++ ..+.|+||.+..||+++-++++|
T Consensus 202 ---------------Eif~~v~PV~eK---------MAeIv~~hie~~~i-------~dl~lvGGac~~~g~e~~Fe~~l 250 (277)
T COG4820 202 ---------------EIFPVVKPVYEK---------MAEIVARHIEGQGI-------TDLWLVGGACMQPGVEELFEKQL 250 (277)
T ss_pred ---------------hcccchhHHHHH---------HHHHHHHHhccCCC-------cceEEecccccCccHHHHHHHHh
Confidence 001110111111 55666666666655 36899999999999999999998
Q ss_pred HhcCCCCceEEEECCCCCccccchh
Q 017115 320 TALAPSSMKIKVVAPPERKYSVWIG 344 (377)
Q Consensus 320 ~~~~~~~~~v~v~~~~~~~~~~w~G 344 (377)
...++.|..|.|-.=+|
T Consensus 251 --------~l~v~~P~~p~y~TPLg 267 (277)
T COG4820 251 --------ALQVHLPQHPLYMTPLG 267 (277)
T ss_pred --------ccccccCCCcceechhh
Confidence 23555555555544444
No 46
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.6e-12 Score=126.48 Aligned_cols=214 Identities=17% Similarity=0.220 Sum_probs=134.3
Q ss_pred CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC-------ceEEEEeCCCCceEEEEe--eCCe-e
Q 017115 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPI--YEGY-A 172 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~v~~v--~~g~-~ 172 (377)
..+++++|..++..+|+..-+.. ..+|++.+.++++|.||++++|. .+-+|.|+|+++.+|+++ -+|. .
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 45899999999999998777766 77999999999999999999873 467999999999888866 3342 2
Q ss_pred cCcceEEEcccHHHHHHHHHHHHHHc-----CCCCcchhH-----HHHHHHHHHhcceeecCHHHHHHHhccCCCcceeE
Q 017115 173 LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSY 242 (377)
Q Consensus 173 ~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
+.......++||.++++.+.+++... +........ ....|..|+.+... .....
T Consensus 223 vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~----------------~~~~i 286 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSS----------------TQASI 286 (620)
T ss_pred hhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhccc----------------cccee
Confidence 33344467999999999998877421 111111000 12233333333211 11111
Q ss_pred ---EcCCCcEEeeCCccccc---cccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHH
Q 017115 243 ---ELPDGQVITIGAERFRC---PEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS 316 (377)
Q Consensus 243 ---~~~~~~~i~v~~~~~~~---~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~ 316 (377)
.+-+|..+...-.|-++ ..-||.. ..+.+..++... .+-+..++.|||+||.+++|.+..-++
T Consensus 287 ~vdsL~~g~d~~~~itrarfe~l~~dlf~~---------~~~~v~~~L~da--~~dk~~i~~vvlVGGstriPk~~~ll~ 355 (620)
T KOG0101|consen 287 EIDSLYEGIDFYTSITRARFEELNADLFRS---------TLEPVEKALKDA--KLDKSDIDEVVLVGGSTRIPKVQKLLE 355 (620)
T ss_pred ccchhhccccccceeehhhhhhhhhHHHHH---------HHHHHHHHHHhh--ccCccCCceeEEecCcccchHHHHHHH
Confidence 12233333333233332 2234433 333444444432 233444678999999999997776666
Q ss_pred HHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 317 REITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+-+.. -++..+-+|+.++..||++.|++
T Consensus 356 d~f~~-------k~~~~sinpDeavA~GAavqaa~ 383 (620)
T KOG0101|consen 356 DFFNG-------KELNKSINPDEAVAYGAAVQAAI 383 (620)
T ss_pred HHhcc-------cccccCCCHHHHHHhhHHHHhhh
Confidence 55522 13345557899999999999876
No 47
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.37 E-value=4.9e-11 Score=112.89 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=109.0
Q ss_pred ChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcC-----------Cc-eEEEEeCCCCceEEEEeeCCeecCcceEEEc
Q 017115 114 PKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG-----------RT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLD 181 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----------~~-~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~ 181 (377)
++...+.+.+.+ +.+|+.-..+..+++|.+-+.. .. +.++||||+++|+++.+.+|.++ ..+.++
T Consensus 141 ~~~~v~~~~~~~-~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~--~~r~i~ 217 (348)
T TIGR01175 141 RKEVVDSRLHAL-KLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML--FTREVP 217 (348)
T ss_pred cHHHHHHHHHHH-HHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE--EEEEee
Confidence 677778888775 8899998888888888754331 12 48999999999999999999998 778899
Q ss_pred ccHHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeCCccccccc
Q 017115 182 LAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPE 261 (377)
Q Consensus 182 ~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e 261 (377)
+||.++++.+.+.+ + .+.+.++++|.+.++... ...+ ..+
T Consensus 218 ~G~~~i~~~i~~~~---~------~~~~~Ae~~k~~~~~~~~-~~~~------------------------------~~~ 257 (348)
T TIGR01175 218 FGTRQLTSELSRAY---G------LNPEEAGEAKQQGGLPLL-YDPE------------------------------VLR 257 (348)
T ss_pred chHHHHHHHHHHHc---C------CCHHHHHHHHhcCCCCCc-hhHH------------------------------HHH
Confidence 99999999998665 2 234668888887654211 0000 000
Q ss_pred cCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHH
Q 017115 262 VLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREIT 320 (377)
Q Consensus 262 ~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~ 320 (377)
..++ .+..-|.+++.-+-........+.|+||||+++++||.+.|+++|.
T Consensus 258 ~~~~---------~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 258 RFKG---------ELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred HHHH---------HHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 0111 1444555565433222223346889999999999999999999994
No 48
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.32 E-value=6.7e-11 Score=111.04 Aligned_cols=187 Identities=14% Similarity=0.188 Sum_probs=108.7
Q ss_pred CCCEEEeCCCCceEEeeeCCCCCCCCCCcceeecCCCC-cccc------------CCCcc---ceeccccccccccceee
Q 017115 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG-VMVG------------MGQKD---AYVGDEAQSKRGILTLK 70 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~~~~~~-~~~~------------~~~~~---~~vg~~~~~~~~~~~~~ 70 (377)
+.++.||+|-.+||+-.... ...+|+.++...... ...+ .++.. |++|+++........-.
T Consensus 2 ~~v~~iDiG~g~tK~~~~~~---~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~~~~~~ 78 (344)
T PRK13917 2 VYVMALDFGNGFVKGKINDE---KFVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTNTGKDT 78 (344)
T ss_pred ceEEEEeccCCeEEEEecCC---CEEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhcccccCCc
Confidence 35899999999999866422 234566654332111 1111 12233 77777653221100000
Q ss_pred ceecCCccCCHHHHHHHHHHhhcccccCC--CCCCcEE--EEeCCCCChHH-HHHHhhhhccc-----------cCCCeE
Q 017115 71 YPIEHGIVSNWDDMEKIWHHTFYNELRVA--PEEHPVL--LTEAPLNPKAN-REKMTQIMFET-----------FNVPAM 134 (377)
Q Consensus 71 ~p~~~g~i~d~~~~~~~~~~~~~~~L~~~--~~~~~vv--l~~p~~~~~~~-~~~l~~~lfe~-----------~~~~~v 134 (377)
+-..... .-+.++.++..++...+... .+...++ +-.|...-... ++.+.+.+-.. ..+..|
T Consensus 79 ~~~~~~y--~~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V 156 (344)
T PRK13917 79 YSTNDRY--DIKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGV 156 (344)
T ss_pred ccccccc--cchhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEE
Confidence 1111111 12456666666653333221 1123333 34554432222 24454443221 446778
Q ss_pred EeeehhhhhhhhcCC-------------ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHc
Q 017115 135 YVAIQAVLSLYASGR-------------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 198 (377)
Q Consensus 135 ~~~~~~~~a~~~~g~-------------~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~ 198 (377)
.++++|++|++.... ...+|||||+.+|+++.+.++.+....+...+.|..++.+.+.+.+..+
T Consensus 157 ~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 233 (344)
T PRK13917 157 KVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKK 233 (344)
T ss_pred EEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhh
Confidence 999999999865421 2569999999999999999999988777778999999999999999543
No 49
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.28 E-value=1.4e-10 Score=109.16 Aligned_cols=194 Identities=21% Similarity=0.323 Sum_probs=114.3
Q ss_pred CHHHHHHHHHHhhcccccCCCCC-----------------CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhh
Q 017115 80 NWDDMEKIWHHTFYNELRVAPEE-----------------HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVL 142 (377)
Q Consensus 80 d~~~~~~~~~~~~~~~L~~~~~~-----------------~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~ 142 (377)
+.+.++..+++=..+.+..+.++ ..|+++.- ++...+..++.+ +.+|.+-..+=-++.|
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa---~k~~v~~~~~~~-~~aGL~~~~vDv~~~A 161 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAA---PKEIVESYVELF-EEAGLKPVAVDVEAFA 161 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEE---EHHHHHHHHHHH-HHTT-EEEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEE---cHHHHHHHHHHH-HHcCCceEEEeehHHH
Confidence 44667777766655666554322 23444432 566667777665 8888887666555554
Q ss_pred h--hhhc---------CCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCCCCcchhHHHHH
Q 017115 143 S--LYAS---------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIV 211 (377)
Q Consensus 143 a--~~~~---------g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~ 211 (377)
. ++.. ...+.++||||++.|+++.+.+|.++ ..+.+++||+++++.+.+.+ ..+.+.+
T Consensus 162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~--f~R~i~~G~~~l~~~i~~~~---------~i~~~~A 230 (340)
T PF11104_consen 162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPI--FSRSIPIGGNDLTEAIAREL---------GIDFEEA 230 (340)
T ss_dssp GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHT---------T--HHHH
T ss_pred HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEE--EEEEEeeCHHHHHHHHHHhc---------CCCHHHH
Confidence 3 2222 12356999999999999999999999 77889999999999999776 2345667
Q ss_pred HHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhH
Q 017115 212 RDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDI 291 (377)
Q Consensus 212 ~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~ 291 (377)
+.+|.+... ..+...+ +.+..++ .|..-|.+++.-+-...
T Consensus 231 e~~k~~~~l-~~~~~~~------------------------------~l~~~~~---------~l~~EI~rsl~~y~~~~ 270 (340)
T PF11104_consen 231 EELKRSGGL-PEEYDQD------------------------------ALRPFLE---------ELAREIRRSLDFYQSQS 270 (340)
T ss_dssp HHHHHHT-------HHH------------------------------HHHHHHH---------HHHHHHHHHHHHHHHH-
T ss_pred HHHHhcCCC-CcchHHH------------------------------HHHHHHH---------HHHHHHHHHHHHHHhcC
Confidence 777776432 1111100 0011111 16666667776554444
Q ss_pred HHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECC
Q 017115 292 RKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAP 334 (377)
Q Consensus 292 ~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~ 334 (377)
...-++.|+||||+|+++||.+.|.++| +.++.+..+
T Consensus 271 ~~~~i~~I~L~Ggga~l~gL~~~l~~~l------~~~v~~~~p 307 (340)
T PF11104_consen 271 GGESIERIYLSGGGARLPGLAEYLSEEL------GIPVEVINP 307 (340)
T ss_dssp -----SEEEEESGGGGSTTHHHHHHHHH------TSEEEE--G
T ss_pred CCCCCCEEEEECCccchhhHHHHHHHHH------CCceEEcCh
Confidence 4556788999999999999999999999 335555443
No 50
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.27 E-value=1.9e-10 Score=107.28 Aligned_cols=183 Identities=13% Similarity=0.065 Sum_probs=117.1
Q ss_pred EeCCCCceEEeeeC-CCCC-CCCCCcceeecCCCC------------ccccCCCccceeccccccccccceeeceecCCc
Q 017115 12 CDNGTGMVKAGFAG-DDAP-RAVFPSIVGRPRHTG------------VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI 77 (377)
Q Consensus 12 iD~Gs~~~k~G~~~-~~~P-~~~~p~~~~~~~~~~------------~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~ 77 (377)
||+|-.++|+-+.+ +..+ ...+|+.++...... .....++..++||+.+..... ....+.+.+..
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~-~~~~~~~~~~~ 80 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAAD-TNRARQLHDEY 80 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhccc-Cccceeccccc
Confidence 89999999987653 2333 346788765422111 011124566788877633221 11122233333
Q ss_pred cCCHHHHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccc--------cCCCeEEeeehhhhhhhhc--
Q 017115 78 VSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET--------FNVPAMYVAIQAVLSLYAS-- 147 (377)
Q Consensus 78 i~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~--------~~~~~v~~~~~~~~a~~~~-- 147 (377)
..+ +....++.+++.. .... ....+++-.|...-..+++.+.+.+-.. ..+..|.++|+|+.|.+..
T Consensus 81 ~~~-~~~~~L~~~Al~~-~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~ 157 (320)
T TIGR03739 81 TET-PEYMALLRGALAL-SKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVA 157 (320)
T ss_pred cCC-HHHHHHHHHHHHH-hcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHh
Confidence 322 3455555555522 2221 2224666677766566777777766432 4678899999999887653
Q ss_pred -------CCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHc
Q 017115 148 -------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 198 (377)
Q Consensus 148 -------g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~ 198 (377)
...+.+|||||+.+|+++.+.++.+....+.+.+.|-..+.+.+.+.+.++
T Consensus 158 ~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 158 QHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred cCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 234679999999999999998888887777778999999999999998654
No 51
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.2e-10 Score=113.31 Aligned_cols=94 Identities=16% Similarity=0.181 Sum_probs=76.4
Q ss_pred CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC----------ceEEEEeCCCCceEEEEeeCCee
Q 017115 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR----------TTGIVLDSGDGVSHTVPIYEGYA 172 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~----------~~~lVVDiG~~~t~v~~v~~g~~ 172 (377)
..+++++|+++.+.+|..+++.+ +.+|.+.++++++..++|+.+|. +.-++.|+|+++|.++.|.--.+
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v 237 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLV 237 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEee
Confidence 46999999999999999999988 88999999999999999999874 46799999999999998842211
Q ss_pred cCc-------------ceEEEcccHHHHHHHHHHHHHH
Q 017115 173 LPH-------------AILRLDLAGRDLTDALMKILTE 197 (377)
Q Consensus 173 ~~~-------------~~~~~~~GG~~i~~~l~~~l~~ 197 (377)
-.. ......+||..++.+|..+|..
T Consensus 238 ~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 238 KTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred ccccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 111 1112368999999999998864
No 52
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=1.9e-09 Score=96.46 Aligned_cols=149 Identities=18% Similarity=0.219 Sum_probs=98.3
Q ss_pred HhhhhccccCCCeEEeeehhhhhhhhc-------C-Cc---eEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHH
Q 017115 121 MTQIMFETFNVPAMYVAIQAVLSLYAS-------G-RT---TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g-~~---~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~ 189 (377)
...-+|+..|.....+--+..+..-++ + .. ..+|+|||++.|.++.+.+|+++ ..+..++||+.++.
T Consensus 153 ~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~l--y~r~~~~g~~Qlt~ 230 (354)
T COG4972 153 SRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKIL--YTREVPVGTDQLTQ 230 (354)
T ss_pred HHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeee--eEeeccCcHHHHHH
Confidence 334455767766554444444432211 1 12 24699999999999999999999 77889999999999
Q ss_pred HHHHHHHHcCCCCcchhHHHHHHHHHHhcceeecCHHHHHHHhccCCCcceeEEcCCCcEEeeCCccccccccCCCCccC
Q 017115 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYVALDYEQELEAAKSSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSLI 269 (377)
Q Consensus 190 ~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~e~lf~p~~~ 269 (377)
.+.+.. ..+.+.++++|...... .+|..+.-. |
T Consensus 231 ~i~r~~---------~L~~~~a~~~k~~~~~P-~~y~~~vl~----------------------------------~--- 263 (354)
T COG4972 231 EIQRAY---------SLTEEKAEEIKRGGTLP-TDYGSEVLR----------------------------------P--- 263 (354)
T ss_pred HHHHHh---------CCChhHhHHHHhCCCCC-CchhHHHHH----------------------------------H---
Confidence 998776 22345577877766542 233221100 0
Q ss_pred CCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHH
Q 017115 270 GMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREIT 320 (377)
Q Consensus 270 ~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~ 320 (377)
....|.+-|.++|+-+-.--.-.-+..|+|+||++.+.|+.+.+.+.|.
T Consensus 264 --f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~ 312 (354)
T COG4972 264 --FLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLS 312 (354)
T ss_pred --HHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhC
Confidence 0112677777777654221122345689999999999999999999994
No 53
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.1e-08 Score=99.63 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=78.4
Q ss_pred CCCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCC------------ceEEEEeCCCCceEEEEe-
Q 017115 101 EEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVSHTVPI- 167 (377)
Q Consensus 101 ~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~~~lVVDiG~~~t~v~~v- 167 (377)
.-.+++|.+|.+++..+|..+++.+ ...|++.+.++++..|+++++|. .+-..||+||+.++++..
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~a 214 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAA 214 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeee
Confidence 3467999999999999999999998 88999999999999999999984 357899999999877754
Q ss_pred -eCCeec-CcceEEEcccHHHHHHHHHHHHHH
Q 017115 168 -YEGYAL-PHAILRLDLAGRDLTDALMKILTE 197 (377)
Q Consensus 168 -~~g~~~-~~~~~~~~~GG~~i~~~l~~~l~~ 197 (377)
-.|..- ..+...-.+||+++++.|.+++..
T Consensus 215 F~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~ 246 (727)
T KOG0103|consen 215 FTKGKLKVLATAFDRKLGGRDFDEALIDHFAK 246 (727)
T ss_pred eccCcceeeeeecccccccchHHHHHHHHHHH
Confidence 444332 222334489999999999998875
No 54
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.6e-07 Score=86.79 Aligned_cols=211 Identities=18% Similarity=0.264 Sum_probs=125.6
Q ss_pred CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCc-----eEEEEeCCCCceEEE--EeeCCeec-C
Q 017115 103 HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTV--PIYEGYAL-P 174 (377)
Q Consensus 103 ~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----~~lVVDiG~~~t~v~--~v~~g~~~-~ 174 (377)
...++++|.+++..+|+...+ +..-+|...+-.+++|.+|++++|.. .-.|.|+|+++..|+ -+.+|.-. .
T Consensus 161 ~~avvtvpAyfndsqRqaTkd-ag~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk 239 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQATKD-AGQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK 239 (640)
T ss_pred hheeeccHHHHhHHHHHHhHh-hhhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence 468999999999999885544 44888999999999999999999853 458999999997766 45677543 2
Q ss_pred cceEEEcccHHHHHHHHHHHHHHc-----CCCCcchhHHHHHHHHHH-------hcceeecCHHHHHHHhccCCCcceeE
Q 017115 175 HAILRLDLAGRDLTDALMKILTER-----GYSFTTTAEREIVRDMKE-------KLAYVALDYEQELEAAKSSSAVEKSY 242 (377)
Q Consensus 175 ~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~~~~~~~ik~-------~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
........||.+++..+..++-.. ++.+. .+...++.+++ .+.... + .....+|
T Consensus 240 sTngdtflggedfd~~~~~~~v~~fk~~~gidl~--kd~~a~qrl~eaaEkaKielSs~~---~---------tei~lp~ 305 (640)
T KOG0102|consen 240 STNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLT--KDRMALQRLREAAEKAKIELSSRQ---Q---------TEINLPF 305 (640)
T ss_pred eccCccccChhHHHHHHHHHHHHhhhcccCcchh--hhHHHHHHHHHHHHhhhhhhhhcc---c---------ceeccce
Confidence 333456789999999998877421 32222 23333333332 222110 0 0111222
Q ss_pred EcCCC---cEEeeCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHH-----HHhhcCceeccCCcCCcChHHH
Q 017115 243 ELPDG---QVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIR-----KDLYGNIVLSGGSTMFPGIADR 314 (377)
Q Consensus 243 ~~~~~---~~i~v~~~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~-----~~l~~nIvl~GG~s~i~gl~~r 314 (377)
...|. +-+++...|-.+.|. +..+|.+.|.-|-.++| ..-++-|+|+||.+++|-..+.
T Consensus 306 iTada~gpkh~~i~~tr~efe~~-------------v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~ 372 (640)
T KOG0102|consen 306 ITADASGPKHLNIELTRGEFEEL-------------VPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQST 372 (640)
T ss_pred eeccCCCCeeEEEeecHHHHHHh-------------hHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHH
Confidence 22222 333444444433222 45566666655533333 3455679999999999966555
Q ss_pred HHHHHHhcCCCCceEEEECCCCCccccchhhhhhh
Q 017115 315 MSREITALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
+++ +-..-|. ..-+|+-++-.||++-+
T Consensus 373 V~e-~fgk~p~-------~~vnPdeava~GAaiqg 399 (640)
T KOG0102|consen 373 VKE-LFGKGPS-------KGVNPDEAVAGGAAIQG 399 (640)
T ss_pred HHH-HhCCCCC-------CCcCCcchhccchhhcc
Confidence 553 3222222 11245555666655544
No 55
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.55 E-value=2.4e-07 Score=86.32 Aligned_cols=110 Identities=16% Similarity=0.237 Sum_probs=65.3
Q ss_pred HHHHhhcccccCCCCCCcEEEEeCCC---CCh--HHHHHHhh---hhc--------cccCCCeEEeeehhhhhhhhc---
Q 017115 87 IWHHTFYNELRVAPEEHPVLLTEAPL---NPK--ANREKMTQ---IMF--------ETFNVPAMYVAIQAVLSLYAS--- 147 (377)
Q Consensus 87 ~~~~~~~~~L~~~~~~~~vvl~~p~~---~~~--~~~~~l~~---~lf--------e~~~~~~v~~~~~~~~a~~~~--- 147 (377)
...|.+ ..-+..+.+..+++..|.- ... ..++.+.+ .+. +.+.+..|.+.|++++|.|..
T Consensus 81 av~haL-~~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~ 159 (318)
T PF06406_consen 81 AVHHAL-LKAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD 159 (318)
T ss_dssp HHHHHH-HHHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHH-HHcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh
Confidence 344555 3345556666678888822 211 11222211 111 234477999999999998864
Q ss_pred --CCceEEEEeCCCCceEEEEeeCCeec-CcceEEEcccHHHHHHHHHHHHHH
Q 017115 148 --GRTTGIVLDSGDGVSHTVPIYEGYAL-PHAILRLDLAGRDLTDALMKILTE 197 (377)
Q Consensus 148 --g~~~~lVVDiG~~~t~v~~v~~g~~~-~~~~~~~~~GG~~i~~~l~~~l~~ 197 (377)
...+.+|||||+.+|+++.|.++... ..+....++|-..+.+.+.+.|..
T Consensus 160 ~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 160 LDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp S-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred hcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 23678999999999999999876543 333344578999999999988854
No 56
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.54 E-value=4.5e-06 Score=75.01 Aligned_cols=43 Identities=28% Similarity=0.607 Sum_probs=36.1
Q ss_pred CceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhh
Q 017115 298 NIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSIL 348 (377)
Q Consensus 298 nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 348 (377)
.|+++||.++.++|.+.+.+.|. ..+..++++.+..-+||+++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg--------~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLG--------MKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhC--------CcEEcCCCccHHHHHHHHhC
Confidence 79999999999999999998882 35666777888889998764
No 57
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.30 E-value=5e-06 Score=79.16 Aligned_cols=163 Identities=15% Similarity=0.164 Sum_probs=97.5
Q ss_pred CCCCCCCCCEEEeCCCCceEEeeeCCC----CCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCC
Q 017115 1 MADAEDIQPLVCDNGTGMVKAGFAGDD----APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHG 76 (377)
Q Consensus 1 ~~~~~~~~~vviD~Gs~~~k~G~~~~~----~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g 76 (377)
||. ++-..|.||+||++|.+=|+.-. .+....|-..-. +++++.-. .-...|+...
T Consensus 1 ~~~-~~i~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~-----------dkev~yrS--------~i~fTPl~~~ 60 (475)
T PRK10719 1 MMT-EELLSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEII-----------DKEIIYRS--------PIYFTPLLKQ 60 (475)
T ss_pred CCc-cEEEEEEEeccCceEEEEEEEEEEecccccccCceEEEe-----------eeEEEEec--------CceecCCCCC
Confidence 554 66778999999999998777422 122222221100 11111111 1245688777
Q ss_pred ccCCHHHHHHHHHHhhcccccCCCCC--CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEee-----------ehhhhh
Q 017115 77 IVSNWDDMEKIWHHTFYNELRVAPEE--HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVA-----------IQAVLS 143 (377)
Q Consensus 77 ~i~d~~~~~~~~~~~~~~~L~~~~~~--~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~-----------~~~~~a 143 (377)
..-|-++++++...=| +.-++.+++ ..+.++.-... .++.+.+++ ++++...=-|+ -.++++
T Consensus 61 ~~ID~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~~~---~~~Nl~~~v-~~~~~~~gdfVVA~AG~~le~iva~~AS 135 (475)
T PRK10719 61 GEIDEAAIKELIEEEY-QKAGIAPESIDSGAVIITGETA---RKENAREVV-MALSGSAGDFVVATAGPDLESIIAGKGA 135 (475)
T ss_pred ccccHHHHHHHHHHHH-HHcCCCHHHccccEEEEEechh---HHHHHHHHH-HHhcccccceeeeccCccHHHhhhHHHh
Confidence 7789999999999886 777777653 33333322222 223333333 33222111122 114433
Q ss_pred hhhc----CCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHH
Q 017115 144 LYAS----GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA 190 (377)
Q Consensus 144 ~~~~----g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~ 190 (377)
+.+. .....++||||+++|+++.+.+|.++ +....++||++++..
T Consensus 136 g~avLseEke~gVa~IDIGgGTT~iaVf~~G~l~--~T~~l~vGG~~IT~D 184 (475)
T PRK10719 136 GAQTLSEERNTRVLNIDIGGGTANYALFDAGKVI--DTACLNVGGRLIETD 184 (475)
T ss_pred hHHHhhhhccCceEEEEeCCCceEEEEEECCEEE--EEEEEecccceEEEC
Confidence 3222 12478999999999999999999999 777889999988765
No 58
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.22 E-value=8.4e-06 Score=73.63 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=39.6
Q ss_pred hhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEE-CCCCCccccchhhhhhhc
Q 017115 295 LYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVV-APPERKYSVWIGGSILAS 350 (377)
Q Consensus 295 l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~-~~~~~~~~~w~Gasi~a~ 350 (377)
+-..|+++||.++-+|+.+.|++.|.. ++. .+++|++...+||+++|.
T Consensus 239 i~~~v~~~GGva~N~~l~~al~~~Lg~--------~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 239 VEEGFFITGGIAKNPGVVKRIERILGI--------KAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCEEEECcccccHHHHHHHHHHhCC--------CceeCCCCccHHHHHHHHHHHH
Confidence 446799999999999999999998842 333 356789999999999984
No 59
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.18 E-value=9.1e-05 Score=68.18 Aligned_cols=45 Identities=27% Similarity=0.430 Sum_probs=40.8
Q ss_pred ceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 299 IVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 299 Ivl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
||++||++...++.+.+.+.| ..+|+.||+|++.-..||+++|+-
T Consensus 346 iv~~GGva~n~av~~ale~~l--------g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL--------GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh--------CCeeecCCccchhhHHHHHHHHhh
Confidence 999999999999999999888 458899999999999999998853
No 60
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.16 E-value=7.9e-06 Score=76.71 Aligned_cols=46 Identities=28% Similarity=0.564 Sum_probs=40.2
Q ss_pred cCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017115 297 GNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 297 ~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+.|+++||.++.+|+.+.+++.|. .+++.|++|++...+||+++|+
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence 559999999999999999998883 3566788999999999999984
No 61
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.13 E-value=1.8e-05 Score=70.59 Aligned_cols=50 Identities=20% Similarity=0.440 Sum_probs=40.7
Q ss_pred cCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhh
Q 017115 297 GNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 297 ~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
++|+++||.++-+++.+.|+++|... ...+.+..+++|++...+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 36999999999999999999998532 124556667889999999999875
No 62
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.33 E-value=0.0017 Score=62.17 Aligned_cols=173 Identities=18% Similarity=0.260 Sum_probs=104.8
Q ss_pred CCCEEEeCCCCceEEeeeC---CC-CCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceecCCccCCHH
Q 017115 7 IQPLVCDNGTGMVKAGFAG---DD-APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWD 82 (377)
Q Consensus 7 ~~~vviD~Gs~~~k~G~~~---~~-~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~ 82 (377)
-..|.||+||++|++=|+. ++ .+.+..|-..- ++.+..=. ..-...|+.+...-|-+
T Consensus 3 i~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I-----------------~dkeViYr--S~I~fTPl~~~~~ID~~ 63 (473)
T PF06277_consen 3 ILSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEI-----------------VDKEVIYR--SPIYFTPLLSQTEIDAE 63 (473)
T ss_pred eEEEEEeecCCceeEEEEEeEEEeccCCCccceEEE-----------------eccEEEec--CCccccCCCCCCccCHH
Confidence 3468999999999987775 21 22223232211 11111100 01235688888888999
Q ss_pred HHHHHHHHhhcccccCCCCC--C-cEEEEeCCCCChHHHHHHhhhhccccCCCeEEe---eehhhhhhhhcCC-------
Q 017115 83 DMEKIWHHTFYNELRVAPEE--H-PVLLTEAPLNPKANREKMTQIMFETFNVPAMYV---AIQAVLSLYASGR------- 149 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~--~-~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~---~~~~~~a~~~~g~------- 149 (377)
+++++++.=| +.-++.+++ . .|++|--.. .++.-+.+.+.+-+.+|==.|.- --+++.|..++|.
T Consensus 64 al~~iv~~eY-~~Agi~p~~I~TGAVIITGETA-rKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~ 141 (473)
T PF06277_consen 64 ALKEIVEEEY-RKAGITPEDIDTGAVIITGETA-RKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEH 141 (473)
T ss_pred HHHHHHHHHH-HHcCCCHHHCccccEEEecchh-hhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhh
Confidence 9999999996 888887754 3 355553332 33333334444434333111100 1256677777662
Q ss_pred -ceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHH-----------HHHHHHHHHHHcCCCC
Q 017115 150 -TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD-----------LTDALMKILTERGYSF 202 (377)
Q Consensus 150 -~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~-----------i~~~l~~~l~~~~~~~ 202 (377)
..-+=+|||+++|.++.+.+|.++ ...-.++||+. +..-++.++.+.+.++
T Consensus 142 ~~~V~NiDIGGGTtN~avf~~G~v~--~T~cl~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 142 HTVVANIDIGGGTTNIAVFDNGEVI--DTACLDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred CCeEEEEEeCCCceeEEEEECCEEE--EEEEEeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 355668999999999999999999 56667999963 3444556666555543
No 63
>PRK13317 pantothenate kinase; Provisional
Probab=97.26 E-value=0.011 Score=53.82 Aligned_cols=52 Identities=23% Similarity=0.166 Sum_probs=41.9
Q ss_pred HhhcCceecc-CCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017115 294 DLYGNIVLSG-GSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 294 ~l~~nIvl~G-G~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
.-.++|+++| |.++.|++.+.+.+.++-. ..++.-+++|++...+||++++.
T Consensus 221 ~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~-----~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 221 KNIENIVYIGSTLTNNPLLQEIIESYTKLR-----NCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred cCCCeEEEECcccccCHHHHHHHHHHHhcC-----CceEEecCCCchhHHHHHHHHhh
Confidence 3447999999 7999999999999877421 24666788899999999998874
No 64
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=96.76 E-value=0.0034 Score=55.66 Aligned_cols=187 Identities=18% Similarity=0.213 Sum_probs=102.6
Q ss_pred ChHHHHHHhhhhccccCCCeEEeeehhhhhhhhcCCc-----eEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHH
Q 017115 114 PKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~ 188 (377)
.+.+-+.+++.+-+.+|++.-.---++-+|..++-.+ .-.|+|+|+++|+.+.+-....+ ...+..=.|+.++
T Consensus 93 ~~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v--~~iHlAGAG~mVT 170 (332)
T PF08841_consen 93 DKLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEV--TAIHLAGAGNMVT 170 (332)
T ss_dssp SS-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-E--EEEEEE-SHHHHH
T ss_pred ccccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcE--EEEEecCCchhhH
Confidence 4444466777787889999888889999998887543 35789999999999888655444 3344566789999
Q ss_pred HHHHHHHHHcCCCCcchhHHHHHHHHHHhc-ceeecCHH----HH----HHHhccCCCcceeEEcCCCcEEeeCC-----
Q 017115 189 DALMKILTERGYSFTTTAEREIVRDMKEKL-AYVALDYE----QE----LEAAKSSSAVEKSYELPDGQVITIGA----- 254 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~-~~v~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~i~v~~----- 254 (377)
-.+..-| |. .+.+.+|+||+-- +.|..-+. +- .++...+..+.+...+.++..+.++.
T Consensus 171 mlI~sEL---Gl-----~d~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~~lE 242 (332)
T PF08841_consen 171 MLINSEL---GL-----EDRELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDLSLE 242 (332)
T ss_dssp HHHHHHC---T------S-HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS-HH
T ss_pred HHHHHhh---CC-----CCHHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCccHH
Confidence 8887666 22 2678899999743 22211000 00 00000001111122222222232211
Q ss_pred ----ccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhc
Q 017115 255 ----ERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITAL 322 (377)
Q Consensus 255 ----~~~~~~e~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~ 322 (377)
.|..+.+-. ...-+.+++.+..+.-.-..+..++|+||++.=--+.+-+.++|+++
T Consensus 243 kir~vRr~AK~kV------------FVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y 302 (332)
T PF08841_consen 243 KIRSVRREAKEKV------------FVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHY 302 (332)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTT
T ss_pred HHHHHHHHhhhhh------------hHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhC
Confidence 000011111 12233455665533222234456999999999888889999999764
No 65
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.42 E-value=0.011 Score=55.47 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=42.4
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhh
Q 017115 296 YGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 296 ~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
-..|+++||.++-+++.+.|++.|....+ ..+++.+++|++...+||+++|
T Consensus 382 ~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 382 TDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 46899999999999999999999965432 2356678899999999999875
No 66
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.15 E-value=0.0064 Score=55.36 Aligned_cols=48 Identities=25% Similarity=0.437 Sum_probs=34.7
Q ss_pred ceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhh
Q 017115 299 IVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 299 Ivl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
|+++||..+-+.+.+.|++.|++..+.. .+..+.+|.+.+..||.++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 9999999988777777766665544442 23344567899999999886
No 67
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.84 E-value=0.038 Score=54.26 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=46.7
Q ss_pred HHHhhhhccccCCCe--EEeeehhhhhhhhc----C-CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHH
Q 017115 119 EKMTQIMFETFNVPA--MYVAIQAVLSLYAS----G-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDAL 191 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~--v~~~~~~~~a~~~~----g-~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l 191 (377)
+.+.+.+-+.+|++. +.=-.++-.+.++. + ...++|+|||+++|.++-+-+..+. .....++|.-.+++.+
T Consensus 91 ~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~G~v~lt~~~ 168 (492)
T COG0248 91 DEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIG--LLISLPLGCVRLTERF 168 (492)
T ss_pred HHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccc--eeEEeecceEEeehhh
Confidence 344444445556552 22233444444432 3 5689999999999999999877776 6667899986666555
Q ss_pred H
Q 017115 192 M 192 (377)
Q Consensus 192 ~ 192 (377)
.
T Consensus 169 ~ 169 (492)
T COG0248 169 F 169 (492)
T ss_pred c
Confidence 3
No 68
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.73 E-value=0.045 Score=50.59 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=49.9
Q ss_pred hHHHHHHhhhhccccCCCeEEeeehh---hhhhhhc----CCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHH
Q 017115 115 KANREKMTQIMFETFNVPAMYVAIQA---VLSLYAS----GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 187 (377)
Q Consensus 115 ~~~~~~l~~~lfe~~~~~~v~~~~~~---~~a~~~~----g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i 187 (377)
-..++.+++.+.+..|++ +.+++.. .+...+. ...+++++|+|+++|.++.+.++.+. .....|+|.-.+
T Consensus 84 A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~--~~~Sl~lG~vrl 160 (300)
T TIGR03706 84 AKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG--EGVSLPLGCVRL 160 (300)
T ss_pred CCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe--EEEEEccceEEh
Confidence 344556666666666654 3444433 3322221 22457999999999999999888877 667789999777
Q ss_pred HHHHH
Q 017115 188 TDALM 192 (377)
Q Consensus 188 ~~~l~ 192 (377)
++.+.
T Consensus 161 ~e~f~ 165 (300)
T TIGR03706 161 TEQFF 165 (300)
T ss_pred HHhhC
Confidence 76653
No 69
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.47 E-value=0.12 Score=51.42 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=52.1
Q ss_pred EEEeCCCCChHHHHHHhhhhccccCCCeEEeee---hhhhhhhhc-----CCceEEEEeCCCCceEEEEeeCCeecCcce
Q 017115 106 LLTEAPLNPKANREKMTQIMFETFNVPAMYVAI---QAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALPHAI 177 (377)
Q Consensus 106 vl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~~-----g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~ 177 (377)
++.....-.-..++.+++.+.+..|++ |-+++ ++.+..++. ...+++|+|||+++|.++.+.+|.+. ..
T Consensus 81 ~vATsAvReA~N~~~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~ 157 (496)
T PRK11031 81 VVATATLRLAVNADEFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT--SL 157 (496)
T ss_pred EEEeHHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee--ee
Confidence 333333333344566666666666765 23333 333333221 12358999999999999999999877 66
Q ss_pred EEEcccHHHHHHHH
Q 017115 178 LRLDLAGRDLTDAL 191 (377)
Q Consensus 178 ~~~~~GG~~i~~~l 191 (377)
...++|.-.+++.+
T Consensus 158 ~Sl~lG~vrl~e~f 171 (496)
T PRK11031 158 FSLSMGCVTWLERY 171 (496)
T ss_pred eEEeccchHHHHHh
Confidence 77899987765443
No 70
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=95.42 E-value=0.17 Score=45.94 Aligned_cols=68 Identities=16% Similarity=0.012 Sum_probs=44.6
Q ss_pred ChHHHHHHHHhcCCh-hHHHHhhcCceeccC-CcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhh
Q 017115 275 GIHETTYNSIMKCDV-DIRKDLYGNIVLSGG-STMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSI 347 (377)
Q Consensus 275 ~l~~~I~~~i~~~~~-~~~~~l~~nIvl~GG-~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi 347 (377)
+|.++|.+.|..+.. --+..-.++|+++|| .+..|.+.+++...+.- . ..+++-+.+..+...+||.+
T Consensus 209 SLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~-~----~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 209 SLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNF-W----SKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhh-c----CceEEEECCcchHHHhhhcc
Confidence 455555555543321 123444788999999 78899999999877642 2 24666666677888888764
No 71
>PRK09557 fructokinase; Reviewed
Probab=95.20 E-value=1 Score=41.50 Aligned_cols=67 Identities=18% Similarity=0.113 Sum_probs=40.8
Q ss_pred hHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCC-CCceEEEECCCCCccccchhhhhhh
Q 017115 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAP-SSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~-~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
|...+...+.-++++ .|+|.||.+..+.+.+.+++.+++... ....+++..+.-...+.-.||+.+.
T Consensus 232 La~~l~~l~~~ldP~-------~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 232 LAKSLAHVINILDPD-------VIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred HHHHHHHHHHHhCCC-------EEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 444555555545543 578888888877788888888876543 2124455544444456677876643
No 72
>PRK10854 exopolyphosphatase; Provisional
Probab=94.94 E-value=0.13 Score=51.31 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=46.3
Q ss_pred ChHHHHHHhhhhccccCCCeEEeee---hhhhhhhhcC-----CceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHH
Q 017115 114 PKANREKMTQIMFETFNVPAMYVAI---QAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 185 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~~g-----~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~ 185 (377)
.-..+..+++.+.+..|++- .+++ ++.+..++.- ..+++|||||+++|.++.+-+|.+. .....++|.-
T Consensus 94 eA~N~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~S~~lG~v 170 (513)
T PRK10854 94 QALNATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--LVESRRMGCV 170 (513)
T ss_pred cCcCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCee--EeEEEeccee
Confidence 33445666666666667652 3333 3333322211 2458999999999999999998766 4445688876
Q ss_pred HHHH
Q 017115 186 DLTD 189 (377)
Q Consensus 186 ~i~~ 189 (377)
.+++
T Consensus 171 rl~e 174 (513)
T PRK10854 171 SFAQ 174 (513)
T ss_pred eHHh
Confidence 5555
No 73
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=94.81 E-value=1.3 Score=41.25 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=38.4
Q ss_pred HhhhhccccCCCeEEeeehhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCCeecC
Q 017115 121 MTQIMFETFNVPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
+.+.+-+.+++| |.+.++.-+++++. +..+.++|.+|.+. ....|.+|+++.
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~ 147 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRH 147 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEee
Confidence 444454667877 77899888887742 35788999999874 777788998765
No 74
>PRK03011 butyrate kinase; Provisional
Probab=94.52 E-value=2.8 Score=39.77 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=33.2
Q ss_pred cCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhh
Q 017115 297 GNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSI 347 (377)
Q Consensus 297 ~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi 347 (377)
+-|||+||.+.-+-|.+++++.+..+. ++.+....+-..+...||..
T Consensus 297 D~IVlgGGI~~~~~l~~~I~~~l~~~~----pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 297 DAIVLTGGLAYSKRLVERIKERVSFIA----PVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CEEEEeCccccCHHHHHHHHHHHHhhC----CeEEEeCCCHHHHHHHHHHH
Confidence 569999999987777788888887653 45776665555555566533
No 75
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=94.29 E-value=0.2 Score=39.38 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=41.4
Q ss_pred EEEeCCCCceEEEEeeCCeecCcceEEEccc--------HHHHH--HHHHHHHHHcCCCCcchhHHHHHHHH-HHhccee
Q 017115 153 IVLDSGDGVSHTVPIYEGYALPHAILRLDLA--------GRDLT--DALMKILTERGYSFTTTAEREIVRDM-KEKLAYV 221 (377)
Q Consensus 153 lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~G--------G~~i~--~~l~~~l~~~~~~~~~~~~~~~~~~i-k~~~~~v 221 (377)
++||||+++|.++....+... .....++| +.+++ +.+.+.++. ..+.+|++ |.++..+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~--~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~---------a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDG--YIRVLGVGEVPSKGIKGGHITDIEDISKAIKI---------AIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEE--EEEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCC--cEEEEEEecccccccCCCEEEEHHHHHHHHHH---------HHHHHHHHhCCeeeEE
Confidence 689999999999999988777 56778999 99999 888877732 34567777 7766544
No 76
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=92.42 E-value=1.8 Score=39.83 Aligned_cols=156 Identities=19% Similarity=0.229 Sum_probs=84.2
Q ss_pred CCCCCCEEEeCCCCceEEeeeCCC---------CCCCCCCcceeecCCCCccccCCCccceeccccccccccceeeceec
Q 017115 4 AEDIQPLVCDNGTGMVKAGFAGDD---------APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIE 74 (377)
Q Consensus 4 ~~~~~~vviD~Gs~~~k~G~~~~~---------~P~~~~p~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~ 74 (377)
.++-..|.||+||+++.+=|+.-+ .||+.+- . ++.. +...-+..|+.
T Consensus 2 te~ilSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii-----~-----------kdi~--------~rS~i~FTPv~ 57 (473)
T COG4819 2 TEQILSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEII-----K-----------KDIS--------WRSPIFFTPVD 57 (473)
T ss_pred cceeeeeeeeccCceeeeeeeeeEEeecccccccceEEEE-----e-----------ccee--------eecceeeeeec
Confidence 566778999999999999887432 2222110 0 0110 11123456776
Q ss_pred CCccCCHHHHHHHHHHhhcccccCCCCC---CcEEEEeCCCCChHHHHHHhhhhccccCCCeEEe---eehhhhhhhhcC
Q 017115 75 HGIVSNWDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNVPAMYV---AIQAVLSLYASG 148 (377)
Q Consensus 75 ~g~i~d~~~~~~~~~~~~~~~L~~~~~~---~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~---~~~~~~a~~~~g 148 (377)
..--.|.++++.+...=| ..-++.++. -.++++-...-.+..|. .+..+-..+|-=.|.- --+++.|--++|
T Consensus 58 ~q~~id~~alk~~v~eeY-~~AGi~pesi~sGAvIITGEtArk~NA~~-vl~alSg~aGDFVVAtAGPdLESiIAGkGaG 135 (473)
T COG4819 58 KQGGIDEAALKKLVLEEY-QAAGIAPESIDSGAVIITGETARKRNARP-VLMALSGSAGDFVVATAGPDLESIIAGKGAG 135 (473)
T ss_pred ccCCccHHHHHHHHHHHH-HHcCCChhccccccEEEeccccccccchH-HHHHhhhcccceEEEecCCCHHHHhccCCcc
Confidence 666667778888776664 556666543 34566643332222222 2222212222111110 012233333333
Q ss_pred -------Cce-EEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHH
Q 017115 149 -------RTT-GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 187 (377)
Q Consensus 149 -------~~~-~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i 187 (377)
+.+ -+=+|||+++|..+-+-.|++. ...-.++||+.+
T Consensus 136 A~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~--dTaCLdiGGRLi 180 (473)
T COG4819 136 AQTLSEQRLTRVLNLDIGGGTTNYSLFDAGKVS--DTACLDIGGRLI 180 (473)
T ss_pred ccchhhhhceEEEEEeccCCccceeeecccccc--cceeeecCcEEE
Confidence 222 3457999999999999999888 444468999744
No 77
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=92.28 E-value=0.14 Score=47.07 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=23.2
Q ss_pred hhh-hcCCceEEEEeCCCCceEEEEeeCCeecCc
Q 017115 143 SLY-ASGRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 143 a~~-~~g~~~~lVVDiG~~~t~v~~v~~g~~~~~ 175 (377)
+++ ..+..+++++|||+++|+|.+|.||.+...
T Consensus 69 a~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~~~ 102 (290)
T PF01968_consen 69 AAARLTGLENAIVVDMGGTTTDIALIKDGRPEIS 102 (290)
T ss_dssp HHH--HT-SSEEEEEE-SS-EEEEEEETTEE---
T ss_pred hhhhcCCCCCEEEEeCCCCEEEEEEEECCeeecc
Confidence 344 557889999999999999999999998633
No 78
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=91.63 E-value=0.39 Score=44.02 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=49.1
Q ss_pred HHHHHHhhhhccccCCCeEEeeeh---hhhhh----hhc-CCceEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHH
Q 017115 116 ANREKMTQIMFETFNVPAMYVAIQ---AVLSL----YAS-GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 187 (377)
Q Consensus 116 ~~~~~l~~~lfe~~~~~~v~~~~~---~~~a~----~~~-g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i 187 (377)
..++.+++.+.+..|++- .+++. +.+.. .+. ...+++|+|+|+++|.++.+.+|.+. .....|+|.-.+
T Consensus 71 ~N~~~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl 147 (285)
T PF02541_consen 71 KNSDEFLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV--FSQSLPLGAVRL 147 (285)
T ss_dssp TTHHHHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE--EEEEES--HHHH
T ss_pred cCHHHHHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee--EeeeeehHHHHH
Confidence 334556666667777653 33432 22222 223 56789999999999999999999988 667889999877
Q ss_pred HHHHH
Q 017115 188 TDALM 192 (377)
Q Consensus 188 ~~~l~ 192 (377)
++.+.
T Consensus 148 ~e~~~ 152 (285)
T PF02541_consen 148 TERFF 152 (285)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 77663
No 79
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=91.19 E-value=0.97 Score=42.03 Aligned_cols=50 Identities=22% Similarity=0.326 Sum_probs=37.2
Q ss_pred CceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCC---CCccccchhhhhhhcc
Q 017115 298 NIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPP---ERKYSVWIGGSILASL 351 (377)
Q Consensus 298 nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~---~~~~~~w~Gasi~a~l 351 (377)
-|+|+|-.+.++.|.+.+...|...++. ++.... -.--.+..|++++|+-
T Consensus 263 ~IilSGr~~~~~~~~~~l~~~l~~~~~~----~v~~l~~~~~~aKeaA~GaAiIA~g 315 (343)
T PF07318_consen 263 EIILSGRFSRIPEFRKKLEDRLEDYFPV----KVRKLEGLARKAKEAAQGAAIIANG 315 (343)
T ss_pred EEEEeccccccHHHHHHHHHHHHhhccc----ceeecccccccchhhhhhHHHHhhh
Confidence 4999999999999999999999888762 332221 1123478999999863
No 80
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=91.09 E-value=0.26 Score=43.93 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=34.9
Q ss_pred ceEEEEeCCCCceEEEEeeCCeecCcceEEE----cccHHHHHHHHHHHHH
Q 017115 150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRL----DLAGRDLTDALMKILT 196 (377)
Q Consensus 150 ~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~----~~GG~~i~~~l~~~l~ 196 (377)
-+-+.|.+|...|.++.|.+|+++.....+. ..||-.++..++-.|.
T Consensus 163 ~nfIavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa 213 (374)
T COG2441 163 VNFIAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALA 213 (374)
T ss_pred hhhHHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHH
Confidence 4568899999999999999999995544433 5666566666665554
No 81
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=89.28 E-value=0.41 Score=44.32 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=25.7
Q ss_pred hcCCceEEEEeCCCCceEEEEeeCCeecC
Q 017115 146 ASGRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 146 ~~g~~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
+....+++.+|+|+++|+|+||.+|.+..
T Consensus 124 a~~~~~~I~~DmGGTTtDi~~i~~G~p~~ 152 (318)
T TIGR03123 124 AKRIPECLFVDMGSTTTDIIPIIDGEVAA 152 (318)
T ss_pred HhcCCCEEEEEcCccceeeEEecCCEeee
Confidence 34478999999999999999999999884
No 82
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=87.17 E-value=27 Score=33.08 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=24.5
Q ss_pred cCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECC
Q 017115 297 GNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAP 334 (377)
Q Consensus 297 ~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~ 334 (377)
+-|||+||.+.-+-+.+++++.|..+. +|.+...
T Consensus 295 D~IV~gGGI~e~~~l~~~I~~~l~~~a----~v~~~pg 328 (351)
T TIGR02707 295 DAIVLTGGLAYSKYFVSEIIKRVSFIA----PVLVYPG 328 (351)
T ss_pred CEEEEcchhhcCHHHHHHHHHHHHhhC----CEEEeCC
Confidence 469999999987777777777777654 3455533
No 83
>PRK13321 pantothenate kinase; Reviewed
Probab=86.97 E-value=6.9 Score=35.20 Aligned_cols=19 Identities=32% Similarity=0.407 Sum_probs=16.5
Q ss_pred CEEEeCCCCceEEeeeCCC
Q 017115 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~ 27 (377)
.+.||+|.+++|+|+..++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 4899999999999998654
No 84
>PRK13324 pantothenate kinase; Reviewed
Probab=86.31 E-value=18 Score=32.60 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=16.2
Q ss_pred CEEEeCCCCceEEeeeCCC
Q 017115 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~ 27 (377)
.+.||+|-+++|.|+..++
T Consensus 2 iL~iDiGNT~ik~gl~~~~ 20 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGD 20 (258)
T ss_pred EEEEEeCCCceEEEEEECC
Confidence 5889999999999988643
No 85
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=84.88 E-value=15 Score=32.79 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=16.4
Q ss_pred CEEEeCCCCceEEeeeCCC
Q 017115 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~ 27 (377)
-++||+|-++++.|+..+.
T Consensus 2 ~L~iDiGNT~~~~a~~~~~ 20 (251)
T COG1521 2 LLLIDIGNTRIVFALYEGG 20 (251)
T ss_pred eEEEEeCCCeEEEEEecCC
Confidence 4899999999999988743
No 86
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=84.69 E-value=9.8 Score=32.92 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.1
Q ss_pred EEEeCCCCceEEeeeCCC
Q 017115 10 LVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~~~ 27 (377)
++||+|-+++|+|+..++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999998665
No 87
>PRK13318 pantothenate kinase; Reviewed
Probab=83.14 E-value=25 Score=31.59 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.9
Q ss_pred CEEEeCCCCceEEeeeCC
Q 017115 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~ 26 (377)
.+.||+|.+++|+|+..+
T Consensus 2 iL~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEEECCCcEEEEEEEC
Confidence 578999999999998863
No 88
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=82.45 E-value=0.92 Score=40.12 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=21.3
Q ss_pred CceEEEEeCCCCceEEEEeeCCe
Q 017115 149 RTTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 149 ~~~~lVVDiG~~~t~v~~v~~g~ 171 (377)
..+++.||+|..+|+|.||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 46799999999999999999997
No 89
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=82.03 E-value=15 Score=32.84 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.7
Q ss_pred EEEeCCCCceEEeeeCCC
Q 017115 10 LVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 10 vviD~Gs~~~k~G~~~~~ 27 (377)
++||+|-+++|+|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999988654
No 90
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=81.15 E-value=45 Score=30.72 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=33.3
Q ss_pred cccCCCeEEeeehhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCCeecCc
Q 017115 127 ETFNVPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~~ 175 (377)
+.+++| |.+-++.-|++++- +..+.+.|-+|.+ +-...|.||++...
T Consensus 104 ~~~~~P-v~veNDan~aalaE~~~g~~~~~~~~~~i~~gtG-IG~giv~~g~l~~G 157 (314)
T COG1940 104 ARLGLP-VFVENDANAAALAEAWFGAGRGIDDVVYITLGTG-IGGGIIVNGKLLRG 157 (314)
T ss_pred HHHCCC-EEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccc-eeEEEEECCEEeec
Confidence 445655 56888888888753 2457888888876 66667888887753
No 91
>PRK13329 pantothenate kinase; Reviewed
Probab=78.59 E-value=17 Score=32.50 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=15.8
Q ss_pred CEEEeCCCCceEEeeeC
Q 017115 9 PLVCDNGTGMVKAGFAG 25 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~ 25 (377)
.++||.|-+.+|.++..
T Consensus 3 ~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYD 19 (249)
T ss_pred EEEEEcCcchheeeEec
Confidence 89999999999999875
No 92
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=76.43 E-value=19 Score=32.13 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=44.0
Q ss_pred cccCCCeEEeeehhhhhhhhcC-------CceEEEEeCCCCceEEEEeeCCeecCcceEEE---cccHHHHHHHHHHH
Q 017115 127 ETFNVPAMYVAIQAVLSLYASG-------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRL---DLAGRDLTDALMKI 194 (377)
Q Consensus 127 e~~~~~~v~~~~~~~~a~~~~g-------~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~---~~GG~~i~~~l~~~ 194 (377)
...+... .+.+...||.++.- ....+|||+|-+.|-...|.+|++. ..... -+....+.+++.++
T Consensus 138 ~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~--GvfEHHT~~l~~~kL~~~l~~l 212 (254)
T PF08735_consen 138 GGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY--GVFEHHTGMLTPEKLEEYLERL 212 (254)
T ss_pred ccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE--EEEecccCCCCHHHHHHHHHHH
Confidence 4444444 78888888877653 4678999999999999999999886 33333 33344444444433
No 93
>PRK13326 pantothenate kinase; Reviewed
Probab=75.26 E-value=38 Score=30.60 Aligned_cols=20 Identities=20% Similarity=0.317 Sum_probs=17.3
Q ss_pred CEEEeCCCCceEEeeeCCCC
Q 017115 9 PLVCDNGTGMVKAGFAGDDA 28 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~~ 28 (377)
.++||+|-+++|+|+..++.
T Consensus 8 ~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 8 QLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEeCCCeEEEEEEECCE
Confidence 48999999999999987653
No 94
>PRK13320 pantothenate kinase; Reviewed
Probab=75.25 E-value=41 Score=29.99 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=16.6
Q ss_pred CEEEeCCCCceEEeeeCCC
Q 017115 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~ 27 (377)
.+.||+|-+++|+|+..++
T Consensus 4 ~L~iDiGNT~ik~~~~~~~ 22 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEGD 22 (244)
T ss_pred EEEEEeCCCcEEEEEEECC
Confidence 7899999999999988643
No 95
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=72.49 E-value=3.3 Score=42.56 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=25.0
Q ss_pred hhhhcCCce--EEEEeCCCCceEEEEeeCCeec
Q 017115 143 SLYASGRTT--GIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 143 a~~~~g~~~--~lVVDiG~~~t~v~~v~~g~~~ 173 (377)
|+|-+|..+ ++++|+|+++|+++-+.+|.+.
T Consensus 269 Aa~ltg~~~g~~i~~DmGGTStDva~i~~G~pe 301 (674)
T COG0145 269 AAYLTGLKAGNAIVFDMGGTSTDVALIIDGEPE 301 (674)
T ss_pred HHHhcccccCCEEEEEcCCcceeeeeeecCcEE
Confidence 344446666 9999999999999999988665
No 96
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=71.18 E-value=6.8 Score=34.18 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=34.5
Q ss_pred cCCceEEEEeCCCCceEEEEeeCCee-cCcceEEEcccHHHHHHHHHHHHHHcCC
Q 017115 147 SGRTTGIVLDSGDGVSHTVPIYEGYA-LPHAILRLDLAGRDLTDALMKILTERGY 200 (377)
Q Consensus 147 ~g~~~~lVVDiG~~~t~v~~v~~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 200 (377)
+|..+..|+-+.++.|+|..+.+.+- + .-.++++.=-.+..++++.+.-.+.
T Consensus 121 TgA~nPvvLYvSGGNTQvIAYse~rYrI--FGETlDIAvGNClDRFAR~lklsN~ 173 (336)
T KOG2708|consen 121 TGAQNPVVLYVSGGNTQVIAYSEKRYRI--FGETLDIAVGNCLDRFARVLKLSND 173 (336)
T ss_pred ccCCCCEEEEEeCCceEEEEEccceeee--ecceehhhhhhhHHHHHHHhcCCCC
Confidence 45678899999999999999988743 3 2344566533455566666654433
No 97
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=65.43 E-value=48 Score=30.21 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=34.7
Q ss_pred hhccccCCCeEEeeehhhhhhhhc------CCceEEEEeCCCCceEEEEeeCCeecC
Q 017115 124 IMFETFNVPAMYVAIQAVLSLYAS------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 124 ~lfe~~~~~~v~~~~~~~~a~~~~------g~~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
.+-+.+++| |++.++.-+++++- +..+.+.|.+|.+ +-...|.||+++.
T Consensus 91 ~l~~~~~~p-v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~G-iG~giv~~G~~~~ 145 (291)
T PRK05082 91 TLEQLTDLP-TIALNDAQAAAWAEYQALPDDIRNMVFITVSTG-VGGGIVLNGKLLT 145 (291)
T ss_pred HHHHHhCCC-EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCC-cceEEEECCEEee
Confidence 333556887 77899888887642 3467889999855 5566677998764
No 98
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=64.72 E-value=14 Score=31.25 Aligned_cols=22 Identities=9% Similarity=0.264 Sum_probs=18.2
Q ss_pred ceecCCccCCHHHHHHHHHHhh
Q 017115 71 YPIEHGIVSNWDDMEKIWHHTF 92 (377)
Q Consensus 71 ~p~~~g~i~d~~~~~~~~~~~~ 92 (377)
.-+++|.|.|.+.+.+.++.++
T Consensus 35 ~gi~~G~I~d~~~~~~~I~~ai 56 (187)
T smart00842 35 RGIRKGVIVDIEAAARAIREAV 56 (187)
T ss_pred CCccCcEEECHHHHHHHHHHHH
Confidence 3478999999999888888776
No 99
>PRK12408 glucokinase; Provisional
Probab=60.90 E-value=40 Score=31.65 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=33.6
Q ss_pred hhhccccCCCeEEeeehhhhhhhhcC----------------C-ceEEEEeCCCCceEEEEeeCCe
Q 017115 123 QIMFETFNVPAMYVAIQAVLSLYASG----------------R-TTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~g----------------~-~~~lVVDiG~~~t~v~~v~~g~ 171 (377)
+.+-+.++++.|.+.++.-|++++-- . .+.++|-+|.+ .-...|++|.
T Consensus 102 ~~l~~~~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTG-iGggivi~g~ 166 (336)
T PRK12408 102 EQIRAQLGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTG-LGAALWIPNG 166 (336)
T ss_pred HHHHHHcCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCc-ceEEEEEcCC
Confidence 33434578888999999999998741 1 35677777754 5566677775
No 100
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=58.35 E-value=14 Score=33.69 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=41.5
Q ss_pred hHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhh
Q 017115 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
|...+.+.+.-++++ .|+|.|+.+..+.|.+++++.+++.. ....+++..+.....++-.||+.++
T Consensus 221 la~~l~~l~~~~dpe-------~IvlgG~~~~~~~~~~~i~~~l~~~~-~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 221 IARLIADLKATLDCQ-------CVVLGGSVGLAEGYLELVQAYLAQEP-AIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred HHHHHHHHHHHhCCC-------EEEEcCccccHHHHHHHHHHHHHhcc-cccCCeEEECccCCchhhhhHHHHh
Confidence 555555555555554 57887777766667777777777642 2124455555445667778988765
No 101
>PRK13331 pantothenate kinase; Reviewed
Probab=57.22 E-value=11 Score=33.74 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=25.4
Q ss_pred CCCCCCCCCEEEeCCCCceEEeeeCCCC
Q 017115 1 MADAEDIQPLVCDNGTGMVKAGFAGDDA 28 (377)
Q Consensus 1 ~~~~~~~~~vviD~Gs~~~k~G~~~~~~ 28 (377)
||+...+..++||+|-+++++|+..++.
T Consensus 1 ~~~~~~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 1 MMFHTSNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCCCCCCcEEEEEeCCCcEEEEEEECCE
Confidence 8999999999999999999999987643
No 102
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=56.58 E-value=75 Score=30.56 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=15.4
Q ss_pred CceEEEEeCCCCceEEE
Q 017115 149 RTTGIVLDSGDGVSHTV 165 (377)
Q Consensus 149 ~~~~lVVDiG~~~t~v~ 165 (377)
..+.-|+|+|+++|+++
T Consensus 212 ~~tvgv~DLGGGSTQi~ 228 (453)
T KOG1385|consen 212 HRTVGVVDLGGGSTQIT 228 (453)
T ss_pred CCceEEEEcCCceEEEE
Confidence 56889999999999998
No 103
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=56.53 E-value=22 Score=36.65 Aligned_cols=24 Identities=8% Similarity=0.007 Sum_probs=19.9
Q ss_pred hhhccccCCCeEEeeehhhhhhhh
Q 017115 123 QIMFETFNVPAMYVAIQAVLSLYA 146 (377)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~ 146 (377)
+.+-+.++++.|.+.++.-|++++
T Consensus 99 ~~l~~~~g~~~v~l~ND~~aaA~g 122 (638)
T PRK14101 99 EATRRALGFDTLLVVNDFTALAMA 122 (638)
T ss_pred HHHHHHcCCCeEEEEchHHHHHcC
Confidence 344456899999999999999999
No 104
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=56.01 E-value=5.6 Score=37.74 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=20.1
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHh
Q 017115 296 YGNIVLSGGSTMFPGIADRMSREITA 321 (377)
Q Consensus 296 ~~nIvl~GG~s~i~gl~~rl~~eL~~ 321 (377)
...|++|||++.=+-|.++|++.|..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 35799999999999999999988744
No 105
>PRK00292 glk glucokinase; Provisional
Probab=55.24 E-value=88 Score=28.90 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=32.4
Q ss_pred hhccccCCCeEEeeehhhhhhhhc-----------C--C----ceEEEEeCCCCceEEEEeeCC
Q 017115 124 IMFETFNVPAMYVAIQAVLSLYAS-----------G--R----TTGIVLDSGDGVSHTVPIYEG 170 (377)
Q Consensus 124 ~lfe~~~~~~v~~~~~~~~a~~~~-----------g--~----~~~lVVDiG~~~t~v~~v~~g 170 (377)
.+-+.+++|.|.+.++.-|++++. | + .+.++|-+|.+ .-...|.+|
T Consensus 85 ~l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG-iG~giv~~g 147 (316)
T PRK00292 85 AMKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG-LGVAGLVPV 147 (316)
T ss_pred HHHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc-ceEEEEEec
Confidence 333567888899999999999874 2 2 46678888855 455555665
No 106
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=53.35 E-value=19 Score=33.11 Aligned_cols=53 Identities=9% Similarity=0.023 Sum_probs=37.2
Q ss_pred HhhhhccccCCCeEEeeehhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCCeecCc
Q 017115 121 MTQIMFETFNVPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~~ 175 (377)
+.+.+-+.+++| |.+.++.-+++++- +..+.+.|.+|.+ +-...|.||+++..
T Consensus 88 l~~~l~~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG-iG~giv~~G~l~~G 147 (303)
T PRK13310 88 LRADLSARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLVFNGKPISG 147 (303)
T ss_pred HHHHHHHHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc-eEEEEEECCEEeeC
Confidence 334444567887 77888888877642 2467888899865 67777889987644
No 107
>PRK09698 D-allose kinase; Provisional
Probab=52.73 E-value=27 Score=32.01 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=35.6
Q ss_pred HhhhhccccCCCeEEeeehhhhhhhhc------CCceEEEEeCCCCceEEEEeeCCeecCc
Q 017115 121 MTQIMFETFNVPAMYVAIQAVLSLYAS------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~------g~~~~lVVDiG~~~t~v~~v~~g~~~~~ 175 (377)
+.+.+-+.+++| |.+.++.-+++++- +..+.+.|.+|.+ +-...|.+|+++..
T Consensus 96 l~~~l~~~~~~p-v~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtG-IG~giv~~G~~~~G 154 (302)
T PRK09698 96 LADKLENTLNCP-VFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTG-MGFAVWMNGAPWTG 154 (302)
T ss_pred HHHHHHHHhCCC-EEEcchHhHHHHHHHHhcCCCCceEEEEEecCc-eEEEEEECCEEeeC
Confidence 333343557887 77888888776532 3457888999866 55666789987643
No 108
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=48.49 E-value=1.4e+02 Score=29.40 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=50.4
Q ss_pred HHHHHHHHHhhcccc-cCCCCCCcEEEEeCCCC---ChHHHHHHhhhhccccC--------CCeEEeee-------hhhh
Q 017115 82 DDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLN---PKANREKMTQIMFETFN--------VPAMYVAI-------QAVL 142 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L-~~~~~~~~vvl~~p~~~---~~~~~~~l~~~lfe~~~--------~~~v~~~~-------~~~~ 142 (377)
+.++.+++.+- +.. +-...+.||.|-.-..+ +....+.+++.+-..+. ...+.++. .-++
T Consensus 65 ~~l~pLlefA~-~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~ 143 (501)
T KOG1386|consen 65 VYLTPLLEFAK-EHIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIA 143 (501)
T ss_pred HHHHHHHHHHH-hhCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHH
Confidence 34566666663 333 22345678877655443 56666777776655444 12333333 3345
Q ss_pred hhhhcC-----------CceEEEEeCCCCceEEEEeeC
Q 017115 143 SLYASG-----------RTTGIVLDSGDGVSHTVPIYE 169 (377)
Q Consensus 143 a~~~~g-----------~~~~lVVDiG~~~t~v~~v~~ 169 (377)
+.|..| ..|.=.+|+|+++|+|+=+..
T Consensus 144 ~NY~LG~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~~ 181 (501)
T KOG1386|consen 144 ANYLLGRFGKKNRWDSRKETFGALDLGGASTQITFEPP 181 (501)
T ss_pred HHHHHHhccccCcccCCcceeeeEecCCceeEEEEecC
Confidence 555544 245567899999999985533
No 109
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=48.37 E-value=1.7e+02 Score=26.65 Aligned_cols=67 Identities=16% Similarity=0.212 Sum_probs=41.7
Q ss_pred hHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcC-CCCceEEEECCCCCccccchhhhhhh
Q 017115 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALA-PSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~-~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
|...|...+.-++++ .|+|-||.+..+-|.+.+++.+.+.. +...++++........+.-+||+.++
T Consensus 233 la~~l~n~~~~ldP~-------~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 233 LAICLGNILTIVDPH-------LVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHHHHHHcCCC-------EEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 555555555556554 57787777776777788888887543 22223455544444566777887765
No 110
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=46.30 E-value=2.1e+02 Score=25.40 Aligned_cols=53 Identities=13% Similarity=0.005 Sum_probs=36.9
Q ss_pred HhhhhccccCCCeEEeeehhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCCeecCc
Q 017115 121 MTQIMFETFNVPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~~ 175 (377)
+.+.+-+.+++| |.+.++.-+++++. +..+.+.|-+|.+ +-...|.||.++..
T Consensus 88 l~~~l~~~~~~p-V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtG-iG~giv~~G~l~~G 147 (256)
T PRK13311 88 LQADLSRLIQRE-VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTG-VGGGLIVNGSIVSG 147 (256)
T ss_pred hHHHHHHHHCCC-EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcC-eEEEEEECCEEecC
Confidence 334443556777 77888888887653 2467888888855 67777889987753
No 111
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=43.46 E-value=19 Score=30.59 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=34.6
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 296 YGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||.++-+-+.+.+.+-+. .+|.+... ..++-+||+++|..
T Consensus 150 ~~~i~~~GG~~~n~~~~q~~Advl~------~~V~~~~~---~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 150 IRRIRVSGGGAKNPLWMQILADVLG------RPVVRPEV---EEASALGAALLAAV 196 (198)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHHT------SEEEEESS---STHHHHHHHHHHHH
T ss_pred ceeeEeccccccChHHHHHHHHHhC------CceEeCCC---CchHHHHHHHHHHh
Confidence 5679999999999878777776663 24555443 46788999988753
No 112
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=43.27 E-value=25 Score=25.90 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=16.2
Q ss_pred CCEEEeCCCCceEEeeeCC
Q 017115 8 QPLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 8 ~~vviD~Gs~~~k~G~~~~ 26 (377)
..+.||+|.+.+++|+..+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 3789999999999998753
No 113
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=40.73 E-value=80 Score=23.09 Aligned_cols=44 Identities=14% Similarity=0.005 Sum_probs=25.8
Q ss_pred EEEEeCCCCceEEEEe-eCCeecCcceEEEcccHHHHHHHHHHHH
Q 017115 152 GIVLDSGDGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKIL 195 (377)
Q Consensus 152 ~lVVDiG~~~t~v~~v-~~g~~~~~~~~~~~~GG~~i~~~l~~~l 195 (377)
.+.+|+|...+.+..+ .+|..+........-+...+-+.+.+++
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i 47 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLI 47 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHH
Confidence 4789999998888877 4666664333222223334444444444
No 114
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.64 E-value=1.5e+02 Score=26.72 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=30.5
Q ss_pred EEeeehhhhhhhhcC----CceEEEEeCCCCceEEEEeeCCeec
Q 017115 134 MYVAIQAVLSLYASG----RTTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 134 v~~~~~~~~a~~~~g----~~~~lVVDiG~~~t~v~~v~~g~~~ 173 (377)
+.++++-.+|..++- ..-++|||+|-+.|....|-++++.
T Consensus 207 av~mDskfaav~gal~dpaa~palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPAADPALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred EEEEcchhHhhhhcccCcccCceEEEEccCCceEEEEecCCeEE
Confidence 456666666666553 2468999999999999999888765
No 115
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=37.59 E-value=22 Score=33.77 Aligned_cols=23 Identities=17% Similarity=0.525 Sum_probs=20.6
Q ss_pred cCceeccCCcCCcChHHHHHHHH
Q 017115 297 GNIVLSGGSTMFPGIADRMSREI 319 (377)
Q Consensus 297 ~nIvl~GG~s~i~gl~~rl~~eL 319 (377)
+.|++|||++.-|-|.+||++.|
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhc
Confidence 35999999999999999998877
No 116
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=37.24 E-value=32 Score=30.65 Aligned_cols=50 Identities=20% Similarity=0.472 Sum_probs=37.2
Q ss_pred ceeccCC-cCCcChHHHHHHHHHhcCCC-CceEEEECCCCCccccchhhhhhhcc
Q 017115 299 IVLSGGS-TMFPGIADRMSREITALAPS-SMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 299 Ivl~GG~-s~i~gl~~rl~~eL~~~~~~-~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|-+-|+. -+.|+|++++++.|..+++. ..+|++... ..++-+||++.|..
T Consensus 189 VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v~~~~~---~dgsg~GAAi~AA~ 240 (243)
T PF03727_consen 189 VAVDGSVYEKYPNFRERLQEALDELLPEEGCKVEFVLS---EDGSGVGAAIAAAV 240 (243)
T ss_dssp EEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEEEEEE----SSTHHHHHHHHHHH
T ss_pred EEEeCcceeeCHHHHHHHHHHHHHhcccccceEEEEEe---cCchHHHHHHHHHH
Confidence 3344444 47899999999999999987 446777665 45689999998864
No 117
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=37.23 E-value=20 Score=34.98 Aligned_cols=70 Identities=20% Similarity=0.228 Sum_probs=42.2
Q ss_pred cEEEEeCCC------CChHHHHHHhhhhcccc-CCC---------eEEeeehhhhhhh-----hcC------CceEEEEe
Q 017115 104 PVLLTEAPL------NPKANREKMTQIMFETF-NVP---------AMYVAIQAVLSLY-----ASG------RTTGIVLD 156 (377)
Q Consensus 104 ~vvl~~p~~------~~~~~~~~l~~~lfe~~-~~~---------~v~~~~~~~~a~~-----~~g------~~~~lVVD 156 (377)
++.++++.+ +....|+.|.+++.+.. +.| .-.+++.|.+... +-+ ....++||
T Consensus 176 ~~~i~eNV~P~i~~ln~epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~VD 255 (463)
T TIGR01319 176 FYRITDNVLPDLDHLNPEAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFILID 255 (463)
T ss_pred eEEecCCcCCCCCCcCchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEEEE
Confidence 444665433 34577777777754432 222 2234444444332 222 24579999
Q ss_pred CCCCceEEEEeeCCeec
Q 017115 157 SGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 157 iG~~~t~v~~v~~g~~~ 173 (377)
||+.+|+|-.+.+|.+-
T Consensus 256 IGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 256 IGGATTDVHSAAAGELS 272 (463)
T ss_pred cCccccchhhccCCCcc
Confidence 99999999999999554
No 118
>PRK13322 pantothenate kinase; Reviewed
Probab=36.42 E-value=3.1e+02 Score=24.41 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=16.1
Q ss_pred CEEEeCCCCceEEeeeCC
Q 017115 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~ 26 (377)
.++||+|-+++|.|+..+
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 589999999999999864
No 119
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=36.11 E-value=33 Score=25.40 Aligned_cols=49 Identities=20% Similarity=0.489 Sum_probs=34.2
Q ss_pred cCCccCCHHHHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhcccc
Q 017115 74 EHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129 (377)
Q Consensus 74 ~~g~i~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~ 129 (377)
..|.+.|+..++..++.+. +.| ++..+.-.+++. ...-+.+++++++.+
T Consensus 42 ~~g~v~Df~~lk~~~~~i~-~~l-----Dh~~Lne~~~~~-~pT~E~ia~~i~~~l 90 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVV-DRL-----DHALLNDVPGLE-NPTAENLARWIYDRL 90 (92)
T ss_pred CccEEEEHHHHHHHHHHHH-HhC-----CCcEeeCCCCCC-CCCHHHHHHHHHHHH
Confidence 4788999999999988875 444 344555455553 446688888888765
No 120
>PF13941 MutL: MutL protein
Probab=33.92 E-value=26 Score=34.36 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=44.7
Q ss_pred CCcEEEEeCCC------CChHHHHHHhhhhcccc-CCC---------eEEeeehhhhhh-----hhc-CCceEEEEeCCC
Q 017115 102 EHPVLLTEAPL------NPKANREKMTQIMFETF-NVP---------AMYVAIQAVLSL-----YAS-GRTTGIVLDSGD 159 (377)
Q Consensus 102 ~~~vvl~~p~~------~~~~~~~~l~~~lfe~~-~~~---------~v~~~~~~~~a~-----~~~-g~~~~lVVDiG~ 159 (377)
..+++++++.+ +...-|+.+.+++.+.. +.| .-.+++.|-+.. ++- +..+-++||||+
T Consensus 178 ~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGG 257 (457)
T PF13941_consen 178 GKEVVITENVMPKIDVLNVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGG 257 (457)
T ss_pred CCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccC
Confidence 45677777543 23455666666554421 222 223455555433 333 567889999999
Q ss_pred CceEEEEeeCCeec
Q 017115 160 GVSHTVPIYEGYAL 173 (377)
Q Consensus 160 ~~t~v~~v~~g~~~ 173 (377)
.+|+|-.+.+|.+.
T Consensus 258 ATTDVhSv~~~~~~ 271 (457)
T PF13941_consen 258 ATTDVHSVAEGSPE 271 (457)
T ss_pred cccchhhhccCCcc
Confidence 99999999866544
No 121
>PRK00976 hypothetical protein; Provisional
Probab=32.39 E-value=58 Score=30.38 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=25.1
Q ss_pred hhhhcCCceEEEEeCCCCceEEEEeeCCeec
Q 017115 143 SLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 143 a~~~~g~~~~lVVDiG~~~t~v~~v~~g~~~ 173 (377)
|.+-++..+-+|+|+|+ .|....|.+|+++
T Consensus 142 a~~~~~~~~fi~~diss-ntv~~~V~~gkIv 171 (326)
T PRK00976 142 AYKLFGFENFIVSDISS-NTVTLLVKDGKIV 171 (326)
T ss_pred HHhhcCCCcEEEEeccc-cEEEEEEECCEEE
Confidence 33456789999999999 7888889999988
No 122
>PF13941 MutL: MutL protein
Probab=32.28 E-value=29 Score=34.01 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=18.8
Q ss_pred CEEEeCCCCceEEeeeC--CCCCCC
Q 017115 9 PLVCDNGTGMVKAGFAG--DDAPRA 31 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~--~~~P~~ 31 (377)
.+++|+||++||+-... ++.+++
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ 26 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRL 26 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEE
Confidence 68999999999998777 556654
No 123
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=31.83 E-value=23 Score=33.32 Aligned_cols=84 Identities=12% Similarity=0.203 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhcccccCCCCC-CcEEEEeCCCCChHHH--HHHhhhhccccCCCeEEee--ehhhhhhhh-cCCceEEEE
Q 017115 82 DDMEKIWHHTFYNELRVAPEE-HPVLLTEAPLNPKANR--EKMTQIMFETFNVPAMYVA--IQAVLSLYA-SGRTTGIVL 155 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~-~~vvl~~p~~~~~~~~--~~l~~~lfe~~~~~~v~~~--~~~~~a~~~-~g~~~~lVV 155 (377)
+.+-.+++.++ +..++..++ ..+.++.-|......| -..++.+-..+++|-+-+- ..++++.+. .+...-+++
T Consensus 51 ~~l~~~i~~~l-~~a~~~~~did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~PligV~HlegHi~a~~l~~~~~~Pl~L 129 (345)
T PTZ00340 51 EHILSLVKEAL-EEAKITPSDISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPLVGVNHCVAHIEMGRLVTGAENPVVL 129 (345)
T ss_pred HHHHHHHHHHH-HHcCCCHHHCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCCEeecchHHHHHHHHhhccCCCCCeEE
Confidence 44555666666 455555554 4566676666544444 4456667677888866443 234444433 222111555
Q ss_pred eCCCCceEEEE
Q 017115 156 DSGDGVSHTVP 166 (377)
Q Consensus 156 DiG~~~t~v~~ 166 (377)
-+-+++|.++.
T Consensus 130 lVSGGhT~l~~ 140 (345)
T PTZ00340 130 YVSGGNTQVIA 140 (345)
T ss_pred EEeCCceEEEE
Confidence 55556666665
No 124
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=30.77 E-value=86 Score=28.81 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=31.2
Q ss_pred EEEeCCCCceEEEEeeCCeecCcceEEEcccHH---HHHHHHHHHHHHcCC
Q 017115 153 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR---DLTDALMKILTERGY 200 (377)
Q Consensus 153 lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~---~i~~~l~~~l~~~~~ 200 (377)
+=||+|+.++-++.+-++.++ .....+.|++ ...+.+.+++.+.+.
T Consensus 35 ~GIDiGStt~K~Vlld~~~i~--~~~~~~tg~~~~~~a~~~l~~~l~~~g~ 83 (293)
T TIGR03192 35 CGIDVGSVSSQAVLVCDGELY--GYNSMRTGNNSPDSAKNALQGIMDKIGM 83 (293)
T ss_pred EEEEeCchhEEEEEEeCCEEE--EEEeecCCCCHHHHHHHHHHHHHHHcCC
Confidence 457999999999999877655 3344566653 555566666655543
No 125
>PRK15027 xylulokinase; Provisional
Probab=29.02 E-value=41 Score=33.34 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=31.5
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 296 YGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||+++-+-+.+.+.+-+. .+|.+ ..+.+.++-.||+++|..
T Consensus 387 ~~~i~~~GGga~s~~w~Qi~Adv~g------~pv~~--~~~~~~~~a~GaA~lA~~ 434 (484)
T PRK15027 387 PQSVTLIGGGARSEYWRQMLADISG------QQLDY--RTGGDVGPALGAARLAQI 434 (484)
T ss_pred ccEEEEeCcccCCHHHHHHHHHHhC------CeEEe--ecCCCcchHHHHHHHHHH
Confidence 4579999999998766555554442 13433 223344678999999865
No 126
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=27.03 E-value=46 Score=29.37 Aligned_cols=19 Identities=42% Similarity=0.316 Sum_probs=15.9
Q ss_pred CEEEeCCCCceEEeeeCCC
Q 017115 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~vviD~Gs~~~k~G~~~~~ 27 (377)
.++||+||+++|+.+..++
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 4799999999999887643
No 127
>PLN02666 5-oxoprolinase
Probab=26.91 E-value=61 Score=36.29 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.2
Q ss_pred ceEEEEeCCCCceEEEEeeCCe
Q 017115 150 TTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 150 ~~~lVVDiG~~~t~v~~v~~g~ 171 (377)
.+.+++|+|+++|+|+.| +|.
T Consensus 314 ~~~I~~DmGGTTtDv~li-~g~ 334 (1275)
T PLN02666 314 KPVIGFDMGGTSTDVSRY-DGS 334 (1275)
T ss_pred CCEEEEecCCceeeeEEE-cCc
Confidence 468999999999999988 554
No 128
>PRK00976 hypothetical protein; Provisional
Probab=26.61 E-value=93 Score=29.04 Aligned_cols=43 Identities=23% Similarity=0.312 Sum_probs=27.9
Q ss_pred CceeccCCcCCc--ChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhc
Q 017115 298 NIVLSGGSTMFP--GIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 298 nIvl~GG~s~i~--gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
.|+|.||.|..+ .|.+++++.+.. . .......+.-+||+.+|.
T Consensus 266 ~IVLGGGVS~~~e~~L~~~I~e~l~~----~------~a~LG~dAGaiGAA~iA~ 310 (326)
T PRK00976 266 NVVLAGSVGEMDEPDVSERIKELLDK----K------VLVLGKESAAIGLALIAR 310 (326)
T ss_pred EEEEcCccccCchhHHHHHHHHHhcc----c------ccccCCchHHHHHHHHHH
Confidence 699999999998 455555555422 1 111224677889888774
No 129
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=25.69 E-value=1.1e+02 Score=26.99 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=28.3
Q ss_pred CCCCcEEEEeCCCCChHHHHHHhhhhccccCC
Q 017115 100 PEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (377)
Q Consensus 100 ~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.+++||||+.-...+.+++..+++++-+.||-
T Consensus 86 ~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (229)
T cd08627 86 TSEYPIILSIEDHCSIVQQRNMAQHFKKVFGD 117 (229)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 56899999999999999999999999888774
No 130
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=24.94 E-value=74 Score=31.33 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=31.9
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 296 YGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||.|+-+-+.+.+.+-+. .+|.+.. ...++-.||+++|..
T Consensus 391 ~~~i~~~GG~s~s~~~~Q~~Adv~g------~pv~~~~---~~e~~a~GaA~~a~~ 437 (481)
T TIGR01312 391 IQSIRLIGGGAKSPAWRQMLADIFG------TPVDVPE---GEEGPALGAAILAAW 437 (481)
T ss_pred cceEEEeccccCCHHHHHHHHHHhC------CceeecC---CCcchHHHHHHHHHH
Confidence 4679999999999877666655542 1343332 234778999999865
No 131
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=24.21 E-value=1.3e+02 Score=29.02 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=31.6
Q ss_pred eEEEEeCCCCceEEEEeeCCeecCcceEEEcccHHHHHHHHHHHHHHcCC
Q 017115 151 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY 200 (377)
Q Consensus 151 ~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 200 (377)
-.+=||+|+++|-++.+.++.++.........--....+.+.+++.+.+.
T Consensus 145 ~~lGIDiGSTttK~Vl~dd~~Ii~~~~~~t~~~~~~a~~~l~~~l~~~Gl 194 (404)
T TIGR03286 145 LTLGIDSGSTTTKAVVMEDNEVIGTGWVPTTKVIESAEEAVERALEEAGV 194 (404)
T ss_pred EEEEEEcChhheeeEEEcCCeEEEEEEeecccHHHHHHHHHHHHHHHcCC
Confidence 45678999999999999888776443332211134455556566655443
No 132
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=24.12 E-value=63 Score=30.33 Aligned_cols=74 Identities=19% Similarity=0.187 Sum_probs=44.3
Q ss_pred hHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhcCCCCceE-EEECCCCCccccchhhhhhhcc
Q 017115 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSREITALAPSSMKI-KVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v-~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|.+-...+|..|+ ++.+..+..|+.||.|.-.-++.+|............++ .-.+.++..+-+|.|--++-+.
T Consensus 288 i~~Kt~~ai~~~~--l~~~~~~~lV~SGGVAsN~yir~~le~l~~~~n~t~i~Pp~~lCsDNgiMIaw~Gie~l~~~ 362 (405)
T KOG2707|consen 288 ISSKTHRAIKSLL--LQPKNVKQLVISGGVASNQYIRGALEKLSAAHNCTSIKPPPSLCSDNGIMIAWTGIEMLRNG 362 (405)
T ss_pred HHHHHHHHHHHhh--hcccCCceEEEcCCccchHHHHHHHHHHHHhhCCccccCChhhcCCcchhhhhHHHHHHhcc
Confidence 4444455555555 455666678999999998877777776544433221110 0122345667789887766443
No 133
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=23.67 E-value=69 Score=29.59 Aligned_cols=87 Identities=11% Similarity=0.110 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhcccccCCCCC-CcEEEEeCCCCChHHH--HHHhhhhccccCCCeEEeeehhhh---hhhh-cC--CceE
Q 017115 82 DDMEKIWHHTFYNELRVAPEE-HPVLLTEAPLNPKANR--EKMTQIMFETFNVPAMYVAIQAVL---SLYA-SG--RTTG 152 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~-~~vvl~~p~~~~~~~~--~~l~~~lfe~~~~~~v~~~~~~~~---a~~~-~g--~~~~ 152 (377)
+.+-.+++.++ +..++++++ ..+.++.-|......| -..++.+-..+++|.+.+ +...+ +++. .+ ....
T Consensus 50 ~~l~~~i~~~l-~~~~~~~~did~iav~~GPG~~tglrvg~~~Ak~la~~~~~p~~~v-~hl~~ha~~a~~~s~~~~~~~ 127 (305)
T TIGR00329 50 ENIPPLLERAL-IESNVDKSEIDLIAYTQGPGLGGSLRVGATFARSLALSLDKPLIGV-NHLLGHIYAPRLDTNILQFPF 127 (305)
T ss_pred HHHHHHHHHHH-HHcCCCHHHCCEEEEecCCCchhhHHHHHHHHHHHHHHhCCCEeec-ccHHHHHHHhhhhcCCCCCCc
Confidence 44556666666 556666655 3466666555444444 345555556678886544 33322 2332 34 3334
Q ss_pred EEEeCCCCceEEEEeeCC
Q 017115 153 IVLDSGDGVSHTVPIYEG 170 (377)
Q Consensus 153 lVVDiG~~~t~v~~v~~g 170 (377)
+|+-+-+++|.+.-+.++
T Consensus 128 l~l~vsGG~t~l~~~~~~ 145 (305)
T TIGR00329 128 VSLLVSGGHTQIIAVKGI 145 (305)
T ss_pred EEEEEcCCceEEEEEeCC
Confidence 433333356767666554
No 134
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=23.49 E-value=1.2e+02 Score=27.27 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCC
Q 017115 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+-+++|. .+++||||+.....+..+++.+++++-+.||-
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd 117 (258)
T cd08630 74 DVIQAVRQHAFT------ASPYPVILSLENHCGLEQQAAMARHLQTILGD 117 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHhh
Confidence 344555555552 57899999999888999999999999887774
No 135
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=23.26 E-value=43 Score=31.31 Aligned_cols=87 Identities=14% Similarity=0.155 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhcccccCCCCCC-cEEEEeCCCCChHHH--HHHhhhhccccCCCeEEe--eehhhhhhhh-cC-CceEEE
Q 017115 82 DDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANR--EKMTQIMFETFNVPAMYV--AIQAVLSLYA-SG-RTTGIV 154 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~-~vvl~~p~~~~~~~~--~~l~~~lfe~~~~~~v~~--~~~~~~a~~~-~g-~~~~lV 154 (377)
+.+-.+++.++ +.-+++..+- -+.+|.-|......+ -..++.+--.++.|-+-+ +..++.+++- .+ ....+.
T Consensus 52 e~i~~li~~al-~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~kPli~VnH~~gHi~a~~l~~~~~~p~v~ 130 (342)
T COG0533 52 ENIPPLIEEAL-AEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNKPLIPVNHLEGHIEAARLETGLAFPPVA 130 (342)
T ss_pred HHHHHHHHHHH-HHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhCCCEeecchHHHHHHHHHhccCCCCCcEE
Confidence 44556666666 5555654443 355666566544433 334555545567775533 2233333332 33 344455
Q ss_pred EeCCCCceEEEEeeC
Q 017115 155 LDSGDGVSHTVPIYE 169 (377)
Q Consensus 155 VDiG~~~t~v~~v~~ 169 (377)
+=+-++.|+++-+.+
T Consensus 131 LlVSGGHTqli~~~~ 145 (342)
T COG0533 131 LLVSGGHTQLIAVRG 145 (342)
T ss_pred EEEecCceEEEEEcC
Confidence 555566788888876
No 136
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=23.23 E-value=1.2e+02 Score=27.19 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=32.9
Q ss_pred HHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCC
Q 017115 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.|-+++| ..+++||||+.-...+.++++.+++++-+.||-
T Consensus 75 v~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 75 VVEAINRSAF------ITSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred HHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 3445545555 246899999999888999999999999887763
No 137
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=23.15 E-value=1.2e+02 Score=27.20 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCCC
Q 017115 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.|-+++|. .+++||||+.-...+..+++.+++++-+.||-.
T Consensus 76 dv~~aI~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 120 (257)
T cd08626 76 DVIQAIKDTAFV------TSDYPVILSFENHCSKPQQYKLAKYCEEIFGDL 120 (257)
T ss_pred HHHHHHHHHhcc------cCCCCEEEEEeccCCHHHHHHHHHHHHHHHhHh
Confidence 345555555552 467999999998889999999999998877643
No 138
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=22.95 E-value=1.2e+02 Score=26.66 Aligned_cols=43 Identities=26% Similarity=0.348 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCC
Q 017115 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.+-+++| ..+++||||+.....+.++++.+++++-+.||-
T Consensus 75 v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 75 VLKTIKEHAF------VTSEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 3444444454 257799999999888999999999998887764
No 139
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=22.75 E-value=1.2e+02 Score=27.19 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCC
Q 017115 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+-+++| ..+++||||+.....+..++..+++++-|.||-
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 74 EVITTVEKYAF------EKSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 34455555555 267899999999888999999999998887764
No 140
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=22.71 E-value=1.3e+02 Score=26.51 Aligned_cols=43 Identities=26% Similarity=0.286 Sum_probs=32.8
Q ss_pred HHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCC
Q 017115 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.+-+++|. .+++||||+.....+.++++.+++++-+.||-
T Consensus 75 v~~aI~~~AF~------~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 75 VIETINKYAFI------KNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHhhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 34555455552 47899999998888999999999998887763
No 141
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=22.69 E-value=1.3e+02 Score=26.95 Aligned_cols=43 Identities=26% Similarity=0.330 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCC
Q 017115 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.+-+++| ..+++||||+.-...+..++..+++++-+.||-
T Consensus 75 v~~aI~~~AF------~~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (253)
T cd08632 75 VIETINKYAF------VKNEFPVILSIENHCSIQQQKKIAQYLKEIFGD 117 (253)
T ss_pred HHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhh
Confidence 3445545554 257899999999888999999999999887763
No 142
>PRK13333 pantothenate kinase; Reviewed
Probab=22.63 E-value=98 Score=26.84 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=17.4
Q ss_pred hhhhhhcCCceEEEEeCCCCceEEEEeeCC
Q 017115 141 VLSLYASGRTTGIVLDSGDGVSHTVPIYEG 170 (377)
Q Consensus 141 ~~a~~~~g~~~~lVVDiG~~~t~v~~v~~g 170 (377)
.+++++. ..++|||+|...|-= .+.+|
T Consensus 77 ~~a~~aa--~~~lVIDaGTAiTiD-vv~~g 103 (206)
T PRK13333 77 IAACYAI--EDGVVVDAGSAITVD-IMSNG 103 (206)
T ss_pred HHHhccC--CCeEEEEcCCceEEE-EEcCC
Confidence 4455543 689999999875533 33555
No 143
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=22.31 E-value=1.3e+02 Score=27.16 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCC
Q 017115 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.+-+++| ..+++||||+.....+..+++.+++++-|.||-
T Consensus 75 v~~~Ik~~AF------~~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 75 VVAAVAQYAF------QVSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 3444444554 257899999999888999999999998887763
No 144
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=22.04 E-value=50 Score=30.27 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=19.7
Q ss_pred CCCCCEEEeCCCCceEEeeeCCCCCCC
Q 017115 5 EDIQPLVCDNGTGMVKAGFAGDDAPRA 31 (377)
Q Consensus 5 ~~~~~vviD~Gs~~~k~G~~~~~~P~~ 31 (377)
...+.|++|+|+++|.+++-.+..|..
T Consensus 75 g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 75 GLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp T-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred CCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 346789999999999999998888863
No 145
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=22.00 E-value=1.3e+02 Score=27.05 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCC
Q 017115 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.+-+++| ..+++||||+.....+..+++.+++++-+.||-
T Consensus 75 v~~~I~~~AF------~~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 75 VLRAIRDYAF------KASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 3455555555 257899999999888999999999999887764
No 146
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=21.71 E-value=1.3e+02 Score=26.97 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCC
Q 017115 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.+=+++| ..+++||||+.-...+..++..+++++-+.||-
T Consensus 77 v~~aIk~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 119 (257)
T cd08591 77 VIEAIAETAF------KTSEYPVILSFENHCSSKQQAKMAEYCREIFGD 119 (257)
T ss_pred HHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 3444444555 257899999999888999999999999887763
No 147
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=21.70 E-value=1.3e+02 Score=26.50 Aligned_cols=43 Identities=26% Similarity=0.302 Sum_probs=32.6
Q ss_pred HHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCC
Q 017115 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.+=+++| ..+++||||+.....+..+++.+++++-+.||-
T Consensus 75 v~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 75 VCRAIKKYAF------VTSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 3444544454 256899999998888999999999998887764
No 148
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=21.69 E-value=1.3e+02 Score=27.06 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCC
Q 017115 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.|-+++| ..+++||||+.....+..++..+++++-+.||-
T Consensus 74 ~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAF------KVSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 34455555554 256899999999888999999999998887764
No 149
>PF03612 EIIBC-GUT_N: Sorbitol phosphotransferase enzyme II N-terminus; InterPro: IPR011618 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This entry represents the N-terminal conserved region of the IIBC component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=21.30 E-value=51 Score=27.76 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=24.9
Q ss_pred CCCCCCCEEEeCCCCceEEeeeCCCCCCCCCCcceee
Q 017115 3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGR 39 (377)
Q Consensus 3 ~~~~~~~vviD~Gs~~~k~G~~~~~~P~~~~p~~~~~ 39 (377)
+++|.-.+|||+|. +.|.|+. |+..|||.--.
T Consensus 59 PdeEi~~vVIDCGG-TlRCGiY----PkK~IpTINi~ 90 (183)
T PF03612_consen 59 PDEEIACVVIDCGG-TLRCGIY----PKKRIPTINIH 90 (183)
T ss_pred ChHHeEEEEEecCC-ceeeccc----cccCCceeeee
Confidence 45677789999995 6888876 88888887443
No 150
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=20.79 E-value=1.2e+02 Score=27.57 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=32.7
Q ss_pred CCcEEEEeCCCCChHHHHHHhhhhccccCCCeEEeeehh
Q 017115 102 EHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQA 140 (377)
Q Consensus 102 ~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~ 140 (377)
+.-+++|+|.-+.....+++.+.+ +.|+++..-+++..
T Consensus 187 D~ai~VTEPTp~glhD~kr~~el~-~~f~ip~~iViNr~ 224 (284)
T COG1149 187 DLAILVTEPTPFGLHDLKRALELV-EHFGIPTGIVINRY 224 (284)
T ss_pred CEEEEEecCCccchhHHHHHHHHH-HHhCCceEEEEecC
Confidence 566899999999999999999988 88999988777764
No 151
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=20.59 E-value=1.5e+02 Score=26.60 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcccccCCCCCCcEEEEeCCCCChHHHHHHhhhhccccCC
Q 017115 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNV 131 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~p~~~~~~~~~~l~~~lfe~~~~ 131 (377)
.++.|-+++| ..+++||||+.....+..++..+++++-|.||-
T Consensus 75 v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08633 75 VIETINKYAF------IKNEYPVILSIENHCSVPQQKKMAQYLTEILGD 117 (254)
T ss_pred HHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 4455555555 247899999999888999999999999887763
No 152
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=20.37 E-value=1.2e+02 Score=27.84 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=0.0
Q ss_pred hHHHHHHHHhcCChhHHHHhhcCceeccCC-cCCcChHHHHHHHHHhc-CCCCceEEEECCCCCccccchhhhhhhc
Q 017115 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGS-TMFPGIADRMSREITAL-APSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~-s~i~gl~~rl~~eL~~~-~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
|...|..++.+++.+.++---=.|+.+||. .....|.+-+..+|+.. .-+ +++.+.+ ..++..||+++|.
T Consensus 244 Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~--~~~l~~~---k~ssAvgAA~laa 315 (336)
T KOG1794|consen 244 LGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTRGFE--RVELYRP---KESSAVGAAILAA 315 (336)
T ss_pred HHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhcccCcc--ceEEEee---cccchHHHHHHhh
No 153
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=20.28 E-value=86 Score=31.12 Aligned_cols=47 Identities=13% Similarity=0.098 Sum_probs=31.8
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhcCCCCceEEEECCCCCccccchhhhhhhcc
Q 017115 296 YGNIVLSGGSTMFPGIADRMSREITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~gl~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|.++||.|+-+-+.+-+.+-+ +.+|.+... .-++-+||+++|..
T Consensus 400 ~~~i~~~GGga~s~~w~Qi~ADv~------g~pv~~~~~---~e~~alGaA~~a~~ 446 (493)
T TIGR01311 400 ITKLRVDGGMTNNNLLMQFQADIL------GVPVVRPKV---TETTALGAAYAAGL 446 (493)
T ss_pred CceEEEecccccCHHHHHHHHHhc------CCeeEecCC---CcchHHHHHHHHHh
Confidence 457999999999887766666555 224444332 24667999998865
No 154
>PRK13321 pantothenate kinase; Reviewed
Probab=20.00 E-value=3e+02 Score=24.52 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=31.2
Q ss_pred EEEeCCCCceEEEEeeCCeecCcceEEE--cccHHHHHHHHHHHHHHcC
Q 017115 153 IVLDSGDGVSHTVPIYEGYALPHAILRL--DLAGRDLTDALMKILTERG 199 (377)
Q Consensus 153 lVVDiG~~~t~v~~v~~g~~~~~~~~~~--~~GG~~i~~~l~~~l~~~~ 199 (377)
+.||+|.+.+.+..+-++..+....... .-+.+.+...+.+++.+.+
T Consensus 3 L~IDIGnT~ik~gl~~~~~i~~~~~~~T~~~~~~~~~~~~l~~l~~~~~ 51 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGDRLLRSFRLPTDKSRTSDELGILLLSLFRHAG 51 (256)
T ss_pred EEEEECCCeEEEEEEECCEEEEEEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 7899999999998777665553222111 2255777777777776543
Done!