Query 017117
Match_columns 377
No_of_seqs 185 out of 1524
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:45:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 1.5E-69 3.3E-74 557.4 26.5 360 2-375 105-548 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 9.9E-44 2.1E-48 352.0 17.3 280 3-341 94-453 (498)
3 PF00854 PTR2: POT family; In 100.0 1E-43 2.3E-48 351.0 13.0 266 3-301 3-305 (372)
4 TIGR00926 2A1704 Peptide:H+ sy 100.0 1.5E-41 3.2E-46 355.6 29.5 240 2-301 55-335 (654)
5 PRK15462 dipeptide/tripeptide 100.0 2.9E-31 6.4E-36 269.8 26.4 276 3-343 78-439 (493)
6 PRK10207 dipeptide/tripeptide 100.0 1.2E-28 2.7E-33 252.0 28.6 281 3-342 83-439 (489)
7 TIGR00924 yjdL_sub1_fam amino 100.0 7.7E-27 1.7E-31 238.1 26.5 282 3-342 81-441 (475)
8 PRK09584 tppB putative tripept 99.9 3.6E-26 7.8E-31 234.6 25.8 279 3-342 90-442 (500)
9 TIGR00926 2A1704 Peptide:H+ sy 98.9 1.7E-07 3.6E-12 99.3 20.6 208 5-274 55-271 (654)
10 TIGR00893 2A0114 d-galactonate 98.6 9.3E-06 2E-10 78.6 22.0 85 52-142 82-166 (399)
11 TIGR00900 2A0121 H+ Antiporter 98.6 1.1E-05 2.3E-10 77.8 21.5 86 51-142 91-176 (365)
12 PF07690 MFS_1: Major Facilita 98.4 1.9E-05 4.2E-10 75.8 18.8 83 53-141 86-168 (352)
13 TIGR00895 2A0115 benzoate tran 98.4 5.3E-05 1.1E-09 73.9 21.9 83 52-140 105-187 (398)
14 PRK11646 multidrug resistance 98.4 2.5E-05 5.5E-10 77.9 19.4 83 52-141 99-181 (400)
15 PRK10489 enterobactin exporter 98.3 9.8E-05 2.1E-09 73.7 20.5 84 53-142 111-194 (417)
16 PRK11551 putative 3-hydroxyphe 98.3 5.3E-05 1.1E-09 75.1 18.1 83 52-140 103-185 (406)
17 PRK10054 putative transporter; 98.3 9.7E-05 2.1E-09 73.6 19.7 79 55-140 99-177 (395)
18 TIGR00711 efflux_EmrB drug res 98.2 0.00016 3.4E-09 73.3 21.0 85 52-142 90-174 (485)
19 PRK14995 methyl viologen resis 98.2 0.00021 4.5E-09 73.5 21.7 85 52-141 94-178 (495)
20 cd06174 MFS The Major Facilita 98.2 0.00013 2.9E-09 69.4 19.0 86 52-143 87-172 (352)
21 PRK03545 putative arabinose tr 98.2 0.00035 7.6E-09 69.1 22.0 83 52-140 97-179 (390)
22 TIGR00881 2A0104 phosphoglycer 98.2 0.00028 6.1E-09 68.2 20.0 85 52-142 83-168 (379)
23 PRK09874 drug efflux system pr 98.1 0.00058 1.3E-08 67.4 20.3 83 52-141 107-189 (408)
24 PRK12307 putative sialic acid 98.0 0.00042 9.1E-09 69.1 18.9 78 52-135 106-183 (426)
25 PRK15402 multidrug efflux syst 98.0 0.0012 2.6E-08 65.5 22.0 83 53-141 102-184 (406)
26 TIGR00710 efflux_Bcr_CflA drug 98.0 0.0012 2.6E-08 64.4 21.6 86 52-143 93-178 (385)
27 TIGR00879 SP MFS transporter, 98.0 0.00076 1.6E-08 67.2 20.2 85 52-142 127-214 (481)
28 PF05977 MFS_3: Transmembrane 98.0 0.00098 2.1E-08 69.2 21.2 89 51-145 102-190 (524)
29 PRK10504 putative transporter; 98.0 0.001 2.2E-08 67.5 21.1 89 52-146 98-186 (471)
30 PRK05122 major facilitator sup 98.0 0.0015 3.4E-08 64.5 21.8 79 52-136 112-190 (399)
31 KOG1330 Sugar transporter/spin 98.0 2E-06 4.4E-11 85.8 0.6 87 51-143 120-208 (493)
32 TIGR00891 2A0112 putative sial 98.0 0.0015 3.2E-08 64.0 20.8 82 52-139 100-183 (405)
33 PRK10213 nepI ribonucleoside t 97.9 0.003 6.5E-08 62.9 21.9 81 52-138 108-188 (394)
34 PRK06814 acylglycerophosphoeth 97.9 0.0015 3.3E-08 73.8 21.9 83 51-139 107-189 (1140)
35 TIGR00901 2A0125 AmpG-related 97.9 0.0017 3.7E-08 63.1 19.6 85 52-142 83-175 (356)
36 PRK12382 putative transporter; 97.8 0.0032 7E-08 62.1 21.3 77 51-133 111-187 (392)
37 TIGR00890 2A0111 Oxalate/Forma 97.8 0.0014 3E-08 63.3 18.0 83 52-141 91-173 (377)
38 TIGR00903 2A0129 major facilit 97.8 0.0018 4E-08 64.0 19.0 77 52-135 79-155 (368)
39 PRK08633 2-acyl-glycerophospho 97.8 0.0025 5.4E-08 71.9 22.4 63 52-120 103-165 (1146)
40 PRK11663 regulatory protein Uh 97.8 0.0063 1.4E-07 61.3 23.3 79 53-137 112-190 (434)
41 TIGR00892 2A0113 monocarboxyla 97.8 0.0023 5E-08 65.0 20.2 78 60-144 116-193 (455)
42 TIGR00894 2A0114euk Na(+)-depe 97.8 0.0038 8.3E-08 63.2 21.6 83 53-141 132-215 (465)
43 PRK10473 multidrug efflux syst 97.8 0.0029 6.3E-08 62.4 20.2 82 53-140 92-173 (392)
44 TIGR00898 2A0119 cation transp 97.8 0.0032 7E-08 64.4 21.1 81 52-141 180-260 (505)
45 TIGR00883 2A0106 metabolite-pr 97.8 0.0016 3.4E-08 63.3 17.8 82 53-140 97-186 (394)
46 TIGR00902 2A0127 phenyl propri 97.7 0.0029 6.3E-08 62.5 18.6 79 52-138 94-172 (382)
47 PRK09705 cynX putative cyanate 97.7 0.0071 1.5E-07 60.1 21.4 82 53-141 98-180 (393)
48 TIGR02332 HpaX 4-hydroxyphenyl 97.7 0.017 3.7E-07 57.8 24.2 84 52-141 96-185 (412)
49 PRK10091 MFS transport protein 97.7 0.011 2.3E-07 58.4 22.1 83 52-140 91-173 (382)
50 PRK11652 emrD multidrug resist 97.7 0.0047 1E-07 61.0 19.5 82 52-139 96-177 (394)
51 PRK05122 major facilitator sup 97.7 0.00038 8.3E-09 68.8 11.5 94 54-153 304-397 (399)
52 TIGR00899 2A0120 sugar efflux 97.7 0.0093 2E-07 57.9 21.1 84 55-142 90-173 (375)
53 PRK15011 sugar efflux transpor 97.6 0.007 1.5E-07 60.0 20.1 69 68-141 121-190 (393)
54 PRK10077 xylE D-xylose transpo 97.6 0.016 3.5E-07 58.6 22.7 84 52-141 120-211 (479)
55 PRK11043 putative transporter; 97.6 0.015 3.3E-07 57.5 21.7 84 52-141 94-177 (401)
56 TIGR00880 2_A_01_02 Multidrug 97.6 0.001 2.2E-08 54.3 10.9 85 53-143 52-136 (141)
57 PRK11102 bicyclomycin/multidru 97.6 0.0014 3E-08 64.1 13.5 83 53-141 80-162 (377)
58 PRK11128 putative 3-phenylprop 97.5 0.0062 1.3E-07 60.1 18.0 80 52-139 94-173 (382)
59 PRK15403 multidrug efflux syst 97.5 0.0015 3.2E-08 65.6 13.3 83 52-140 104-186 (413)
60 PRK11273 glpT sn-glycerol-3-ph 97.5 0.033 7.1E-07 56.4 23.1 82 52-139 120-202 (452)
61 TIGR00788 fbt folate/biopterin 97.5 0.0038 8.2E-08 63.9 16.2 81 57-141 125-205 (468)
62 TIGR00805 oat sodium-independe 97.4 0.00081 1.8E-08 71.5 10.6 86 52-143 172-279 (633)
63 PRK11902 ampG muropeptide tran 97.4 0.024 5.3E-07 56.2 20.4 85 51-141 93-178 (402)
64 TIGR00896 CynX cyanate transpo 97.4 0.053 1.1E-06 52.6 22.1 80 53-139 88-169 (355)
65 PRK11195 lysophospholipid tran 97.4 0.044 9.6E-07 54.5 21.8 76 57-139 93-168 (393)
66 PRK03633 putative MFS family t 97.3 0.036 7.9E-07 54.5 20.8 71 52-128 94-164 (381)
67 TIGR00792 gph sugar (Glycoside 97.3 0.023 5E-07 56.7 19.2 87 52-143 99-192 (437)
68 PRK12382 putative transporter; 97.3 0.0017 3.6E-08 64.1 10.6 85 54-144 304-388 (392)
69 TIGR00885 fucP L-fucose:H+ sym 97.3 0.058 1.3E-06 54.1 21.4 108 3-141 70-203 (410)
70 PRK11010 ampG muropeptide tran 97.2 0.047 1E-06 56.2 20.7 85 51-141 106-191 (491)
71 PRK09874 drug efflux system pr 97.2 0.0029 6.2E-08 62.4 10.5 88 53-146 312-399 (408)
72 TIGR00890 2A0111 Oxalate/Forma 97.0 0.0039 8.5E-08 60.1 9.8 79 55-139 298-376 (377)
73 cd06174 MFS The Major Facilita 97.0 0.0062 1.3E-07 57.9 11.0 85 52-142 265-349 (352)
74 COG2814 AraJ Arabinose efflux 97.0 0.27 5.9E-06 49.1 22.3 90 51-146 100-189 (394)
75 TIGR00889 2A0110 nucleoside tr 97.0 0.005 1.1E-07 61.9 10.2 86 52-143 308-400 (418)
76 PRK03893 putative sialic acid 97.0 0.0049 1.1E-07 62.7 10.3 78 52-135 108-185 (496)
77 TIGR00897 2A0118 polyol permea 96.9 0.31 6.7E-06 48.4 22.9 71 53-129 106-177 (402)
78 TIGR00712 glpT glycerol-3-phos 96.9 0.0096 2.1E-07 60.0 11.7 84 52-141 118-202 (438)
79 PRK03699 putative transporter; 96.8 0.016 3.4E-07 57.4 12.4 84 52-141 95-179 (394)
80 KOG2532 Permease of the major 96.8 0.17 3.6E-06 52.0 19.8 84 54-143 130-214 (466)
81 PRK10489 enterobactin exporter 96.7 0.0085 1.9E-07 59.7 10.0 84 54-143 314-397 (417)
82 KOG3764 Vesicular amine transp 96.7 0.0057 1.2E-07 60.6 8.1 108 51-163 158-268 (464)
83 PRK10406 alpha-ketoglutarate t 96.7 0.012 2.6E-07 59.1 10.8 79 53-137 125-211 (432)
84 KOG1237 H+/oligopeptide sympor 96.7 0.024 5.1E-07 59.5 12.8 102 4-143 34-135 (571)
85 TIGR00886 2A0108 nitrite extru 96.6 0.027 5.9E-07 54.5 12.0 76 52-134 91-177 (366)
86 TIGR01301 GPH_sucrose GPH fami 96.5 0.046 1E-06 56.1 13.2 93 52-148 114-221 (477)
87 TIGR00893 2A0114 d-galactonate 96.4 0.028 6E-07 54.2 10.5 79 58-142 317-396 (399)
88 TIGR00879 SP MFS transporter, 96.4 0.042 9.1E-07 54.6 12.1 68 69-142 400-467 (481)
89 PRK03633 putative MFS family t 96.3 0.03 6.6E-07 55.1 10.7 79 58-142 291-369 (381)
90 TIGR00899 2A0120 sugar efflux 96.3 0.04 8.7E-07 53.4 11.1 82 55-143 291-372 (375)
91 PF13347 MFS_2: MFS/sugar tran 96.3 0.16 3.4E-06 51.0 15.5 91 52-147 103-200 (428)
92 PRK09528 lacY galactoside perm 96.2 0.18 4E-06 50.2 15.9 50 93-143 140-189 (420)
93 TIGR00892 2A0113 monocarboxyla 96.2 0.012 2.7E-07 59.7 7.4 86 53-144 334-420 (455)
94 PRK10642 proline/glycine betai 96.2 0.031 6.8E-07 57.2 10.2 76 54-135 120-203 (490)
95 TIGR00924 yjdL_sub1_fam amino 96.1 0.035 7.7E-07 56.9 10.0 121 4-149 352-472 (475)
96 PRK09705 cynX putative cyanate 96.0 0.069 1.5E-06 53.0 11.6 78 61-143 301-379 (393)
97 PRK10133 L-fucose transporter; 96.0 0.11 2.3E-06 52.7 13.1 85 3-118 93-177 (438)
98 PF03209 PUCC: PUCC protein; 96.0 1.9 4.2E-05 43.1 23.0 129 4-150 53-185 (403)
99 PRK09528 lacY galactoside perm 96.0 0.036 7.8E-07 55.3 9.3 83 54-142 317-400 (420)
100 TIGR00887 2A0109 phosphate:H+ 96.0 0.086 1.9E-06 54.1 12.2 82 52-139 115-219 (502)
101 PRK03545 putative arabinose tr 95.8 0.14 3E-06 50.5 12.6 86 53-145 295-380 (390)
102 TIGR00882 2A0105 oligosacchari 95.8 0.54 1.2E-05 46.4 16.6 75 56-139 103-177 (396)
103 TIGR01272 gluP glucose/galacto 95.7 0.049 1.1E-06 52.5 8.6 86 50-141 8-109 (310)
104 TIGR01299 synapt_SV2 synaptic 95.6 0.071 1.5E-06 57.7 10.5 84 52-141 255-351 (742)
105 TIGR00792 gph sugar (Glycoside 95.6 0.11 2.3E-06 51.9 10.9 90 53-142 312-417 (437)
106 PRK09669 putative symporter Ya 95.6 1.2 2.6E-05 44.9 18.6 82 54-140 111-199 (444)
107 PRK15075 citrate-proton sympor 95.3 0.18 3.8E-06 50.7 11.5 73 54-132 119-199 (434)
108 PF03092 BT1: BT1 family; Int 95.3 1.7 3.6E-05 44.1 18.5 83 54-140 88-170 (433)
109 TIGR01299 synapt_SV2 synaptic 95.2 0.11 2.5E-06 56.2 10.2 76 60-142 656-731 (742)
110 PRK09952 shikimate transporter 95.2 0.2 4.4E-06 50.5 11.4 77 54-136 127-211 (438)
111 TIGR02718 sider_RhtX_FptX side 95.1 2.3 5E-05 41.8 18.7 51 93-143 132-182 (390)
112 PRK10054 putative transporter; 95.1 0.26 5.6E-06 49.0 11.7 94 53-157 299-392 (395)
113 PRK09848 glucuronide transport 95.1 1.8 4E-05 43.5 18.1 34 312-345 356-389 (448)
114 PRK03699 putative transporter; 95.0 0.12 2.5E-06 51.2 9.0 77 56-139 298-374 (394)
115 PLN00028 nitrate transmembrane 94.9 0.27 5.9E-06 50.2 11.6 80 54-140 126-214 (476)
116 PRK10077 xylE D-xylose transpo 94.8 0.51 1.1E-05 47.6 13.3 78 58-141 369-453 (479)
117 PRK11273 glpT sn-glycerol-3-ph 94.8 0.15 3.3E-06 51.5 9.5 62 75-142 370-432 (452)
118 PRK15011 sugar efflux transpor 94.7 0.36 7.8E-06 47.7 11.7 73 64-143 317-389 (393)
119 PRK11646 multidrug resistance 94.7 0.17 3.6E-06 50.5 9.2 82 55-142 300-385 (400)
120 PRK09669 putative symporter Ya 94.6 0.31 6.8E-06 49.1 11.0 73 52-124 319-392 (444)
121 PF11700 ATG22: Vacuole efflux 94.6 6.4 0.00014 40.5 22.0 41 306-346 404-444 (477)
122 PRK03893 putative sialic acid 94.5 0.24 5.3E-06 50.3 10.1 64 69-138 383-446 (496)
123 PRK09848 glucuronide transport 94.4 0.32 6.9E-06 49.0 10.6 90 52-141 319-424 (448)
124 PRK11010 ampG muropeptide tran 94.3 0.53 1.2E-05 48.4 12.0 70 71-146 335-404 (491)
125 PRK11551 putative 3-hydroxyphe 94.2 0.37 8E-06 47.5 10.5 80 55-140 311-391 (406)
126 TIGR00902 2A0127 phenyl propri 94.0 0.55 1.2E-05 46.2 11.1 81 53-141 294-375 (382)
127 TIGR00891 2A0112 putative sial 94.0 0.28 6E-06 47.8 9.0 73 54-132 330-403 (405)
128 PRK11462 putative transporter; 93.8 1.3 2.8E-05 45.1 13.7 84 58-146 115-205 (460)
129 PRK09556 uhpT sugar phosphate 93.7 0.25 5.4E-06 50.2 8.2 80 52-137 122-204 (467)
130 COG2271 UhpC Sugar phosphate p 93.5 0.29 6.3E-06 49.1 8.0 70 71-146 136-208 (448)
131 COG0738 FucP Fucose permease [ 93.1 1.2 2.6E-05 44.5 11.5 86 3-119 80-165 (422)
132 PF05977 MFS_3: Transmembrane 93.1 0.56 1.2E-05 48.8 9.7 53 91-143 340-392 (524)
133 PRK10213 nepI ribonucleoside t 93.0 1.3 2.8E-05 43.9 12.0 78 53-137 306-383 (394)
134 TIGR02718 sider_RhtX_FptX side 92.9 1.2 2.6E-05 43.8 11.6 72 64-140 315-386 (390)
135 TIGR00882 2A0105 oligosacchari 92.9 0.52 1.1E-05 46.5 9.0 48 93-140 342-390 (396)
136 PRK09952 shikimate transporter 92.8 1.4 2.9E-05 44.5 12.0 83 56-144 347-432 (438)
137 PRK15402 multidrug efflux syst 92.8 1.3 2.8E-05 43.8 11.6 72 52-130 309-380 (406)
138 PRK11663 regulatory protein Uh 92.5 0.35 7.5E-06 48.6 7.2 52 91-142 370-421 (434)
139 KOG0254 Predicted transporter 92.5 1.2 2.6E-05 46.0 11.2 103 3-140 121-225 (513)
140 PF13347 MFS_2: MFS/sugar tran 92.2 0.85 1.8E-05 45.7 9.6 74 51-124 314-388 (428)
141 PRK09584 tppB putative tripept 92.1 0.84 1.8E-05 47.1 9.5 121 4-149 353-483 (500)
142 TIGR00883 2A0106 metabolite-pr 92.0 0.6 1.3E-05 45.0 8.0 77 53-135 313-391 (394)
143 PF06609 TRI12: Fungal trichot 92.0 0.74 1.6E-05 48.6 9.0 85 52-143 131-215 (599)
144 KOG3626 Organic anion transpor 91.7 2.1 4.6E-05 46.0 12.0 92 52-149 237-347 (735)
145 PF11700 ATG22: Vacuole efflux 91.5 2.6 5.5E-05 43.4 12.2 84 54-143 382-466 (477)
146 PRK10091 MFS transport protein 91.4 2.6 5.7E-05 41.3 11.8 45 99-143 329-374 (382)
147 PRK10429 melibiose:sodium symp 91.2 2 4.3E-05 43.8 11.1 91 52-142 324-430 (473)
148 PRK10642 proline/glycine betai 91.1 3.2 6.9E-05 42.4 12.6 71 53-129 343-414 (490)
149 TIGR01272 gluP glucose/galacto 91.1 1.1 2.4E-05 43.1 8.7 72 57-136 235-306 (310)
150 PTZ00207 hypothetical protein; 90.6 2.9 6.2E-05 44.3 11.8 102 3-135 93-195 (591)
151 PRK11902 ampG muropeptide tran 90.6 2.2 4.7E-05 42.2 10.4 72 62-143 317-388 (402)
152 TIGR00897 2A0118 polyol permea 90.5 1.2 2.6E-05 44.1 8.6 81 54-142 318-398 (402)
153 TIGR00900 2A0121 H+ Antiporter 90.5 0.95 2.1E-05 43.2 7.6 65 52-122 301-365 (365)
154 PRK08633 2-acyl-glycerophospho 90.4 2.2 4.9E-05 48.2 11.6 77 53-135 323-400 (1146)
155 PRK09556 uhpT sugar phosphate 90.3 2.6 5.7E-05 42.7 11.0 63 75-143 372-447 (467)
156 COG2807 CynX Cyanate permease 90.3 2.2 4.7E-05 42.3 9.7 91 51-148 98-189 (395)
157 PRK11128 putative 3-phenylprop 90.1 2.7 5.8E-05 41.3 10.6 79 52-138 293-372 (382)
158 TIGR00887 2A0109 phosphate:H+ 90.0 3.2 6.9E-05 42.5 11.5 64 70-139 410-483 (502)
159 TIGR00881 2A0104 phosphoglycer 89.8 0.93 2E-05 43.4 7.0 62 60-127 318-379 (379)
160 PRK10504 putative transporter; 89.3 2.8 6.1E-05 42.3 10.3 64 55-124 356-419 (471)
161 TIGR00712 glpT glycerol-3-phos 89.1 1.6 3.6E-05 43.8 8.3 63 75-143 368-431 (438)
162 TIGR00898 2A0119 cation transp 89.0 2.6 5.7E-05 42.9 9.9 71 63-141 421-491 (505)
163 PRK10429 melibiose:sodium symp 88.8 6.1 0.00013 40.2 12.4 84 58-146 112-202 (473)
164 PRK12307 putative sialic acid 88.8 4.2 9.1E-05 40.2 10.9 56 68-129 337-392 (426)
165 COG2814 AraJ Arabinose efflux 88.8 8.4 0.00018 38.6 12.8 59 92-150 333-391 (394)
166 TIGR00894 2A0114euk Na(+)-depe 88.4 4 8.8E-05 41.1 10.7 53 91-143 393-448 (465)
167 KOG2533 Permease of the major 87.8 1 2.2E-05 46.5 6.0 84 54-143 136-226 (495)
168 PRK15034 nitrate/nitrite trans 87.6 11 0.00024 38.7 13.1 86 52-144 128-231 (462)
169 PRK10207 dipeptide/tripeptide 87.4 3.3 7.2E-05 42.6 9.4 92 52-149 379-480 (489)
170 PF03137 OATP: Organic Anion T 87.3 0.15 3.2E-06 53.3 -0.6 91 52-148 141-253 (539)
171 PRK11652 emrD multidrug resist 87.2 7.4 0.00016 38.1 11.6 80 53-139 300-379 (394)
172 TIGR02332 HpaX 4-hydroxyphenyl 86.2 2.3 5.1E-05 42.4 7.4 44 91-134 366-410 (412)
173 TIGR00710 efflux_Bcr_CflA drug 86.1 9.6 0.00021 36.7 11.5 75 53-135 301-376 (385)
174 TIGR00896 CynX cyanate transpo 85.0 4.1 8.9E-05 39.3 8.3 59 59-122 292-350 (355)
175 PRK10133 L-fucose transporter; 84.3 5.8 0.00013 40.0 9.3 81 56-144 351-432 (438)
176 PRK06814 acylglycerophosphoeth 84.3 6.8 0.00015 44.5 10.8 79 52-136 334-413 (1140)
177 PLN00028 nitrate transmembrane 83.9 5.9 0.00013 40.4 9.2 82 56-145 352-433 (476)
178 KOG0255 Synaptic vesicle trans 83.7 56 0.0012 33.5 21.8 80 52-140 171-250 (521)
179 PRK15075 citrate-proton sympor 82.9 4.6 0.0001 40.4 7.9 61 58-124 337-398 (434)
180 TIGR00806 rfc RFC reduced fola 82.7 11 0.00024 38.9 10.4 80 52-139 115-197 (511)
181 TIGR00889 2A0110 nucleoside tr 82.3 56 0.0012 32.6 19.4 38 304-341 330-368 (418)
182 KOG2504 Monocarboxylate transp 81.8 7.2 0.00016 40.5 8.9 106 3-143 113-219 (509)
183 PRK11043 putative transporter; 81.2 23 0.00049 34.7 12.0 69 54-129 298-366 (401)
184 KOG4686 Predicted sugar transp 80.5 8.1 0.00018 37.4 7.9 52 91-142 385-439 (459)
185 PRK11462 putative transporter; 80.1 17 0.00037 37.0 10.9 69 55-123 321-390 (460)
186 PF14007 YtpI: YtpI-like prote 78.5 8.1 0.00018 30.2 6.1 70 78-153 17-86 (89)
187 PRK11195 lysophospholipid tran 77.3 31 0.00068 34.0 11.7 81 55-141 296-376 (393)
188 TIGR00903 2A0129 major facilit 76.5 23 0.0005 34.9 10.3 65 68-140 296-360 (368)
189 PRK10406 alpha-ketoglutarate t 76.4 29 0.00063 34.6 11.2 66 71-142 355-421 (432)
190 KOG2504 Monocarboxylate transp 76.1 4.4 9.6E-05 42.1 5.3 87 53-145 389-476 (509)
191 TIGR00895 2A0115 benzoate tran 75.3 9 0.0002 36.8 7.0 59 53-117 339-397 (398)
192 COG2211 MelB Na+/melibiose sym 74.5 27 0.00058 35.9 10.3 94 4-123 305-399 (467)
193 PF03825 Nuc_H_symport: Nucleo 73.8 37 0.00081 34.0 11.1 81 61-146 310-396 (400)
194 PF06645 SPC12: Microsomal sig 73.2 14 0.00031 27.9 6.0 56 94-152 8-63 (76)
195 PTZ00207 hypothetical protein; 73.0 24 0.00051 37.5 9.8 81 54-141 454-548 (591)
196 KOG0252 Inorganic phosphate tr 71.6 14 0.0003 38.0 7.3 89 60-150 42-138 (538)
197 PRK14995 methyl viologen resis 71.4 16 0.00034 37.4 8.0 60 55-120 354-413 (495)
198 TIGR00711 efflux_EmrB drug res 71.2 11 0.00024 37.8 6.8 64 53-122 349-412 (485)
199 KOG3764 Vesicular amine transp 70.9 9.8 0.00021 38.3 5.9 96 53-148 362-457 (464)
200 PF01306 LacY_symp: LacY proto 70.7 1.2E+02 0.0027 30.6 15.9 50 93-143 137-186 (412)
201 PF03209 PUCC: PUCC protein; 69.8 67 0.0015 32.3 11.6 109 3-142 277-395 (403)
202 TIGR00885 fucP L-fucose:H+ sym 68.8 23 0.0005 35.3 8.4 74 57-138 326-405 (410)
203 COG2223 NarK Nitrate/nitrite t 68.4 59 0.0013 32.9 10.8 83 60-150 113-198 (417)
204 KOG0254 Predicted transporter 67.5 44 0.00095 34.4 10.4 95 50-145 43-140 (513)
205 TIGR00769 AAA ADP/ATP carrier 65.7 27 0.00058 36.0 8.2 38 75-118 152-189 (472)
206 TIGR00769 AAA ADP/ATP carrier 63.0 21 0.00046 36.7 6.9 63 75-142 289-351 (472)
207 PRK10473 multidrug efflux syst 60.0 1.4E+02 0.003 29.0 12.0 37 102-138 331-367 (392)
208 KOG2533 Permease of the major 54.9 93 0.002 32.3 10.0 34 310-343 162-195 (495)
209 PF10762 DUF2583: Protein of u 54.4 61 0.0013 25.0 6.2 9 363-371 68-76 (89)
210 PF03825 Nuc_H_symport: Nucleo 54.2 31 0.00066 34.6 6.2 39 302-340 321-360 (400)
211 PRK15403 multidrug efflux syst 53.4 1.6E+02 0.0036 29.1 11.4 76 54-137 314-389 (413)
212 PF07690 MFS_1: Major Facilita 52.7 62 0.0013 30.3 7.9 77 56-140 2-78 (352)
213 KOG1330 Sugar transporter/spin 51.8 5.9 0.00013 40.5 0.6 40 306-345 145-184 (493)
214 TIGR00880 2_A_01_02 Multidrug 51.2 72 0.0016 24.9 7.0 37 306-342 75-111 (141)
215 PRK10692 hypothetical protein; 50.2 83 0.0018 24.4 6.4 46 288-333 8-56 (92)
216 KOG0569 Permease of the major 49.3 3.2E+02 0.007 28.3 18.5 86 52-143 116-203 (485)
217 COG2270 Permeases of the major 49.1 94 0.002 31.6 8.5 79 60-144 349-428 (438)
218 COG0477 ProP Permeases of the 46.7 94 0.002 27.5 7.8 79 53-136 95-176 (338)
219 PF03219 TLC: TLC ATP/ADP tran 45.5 68 0.0015 33.2 7.2 81 56-141 282-366 (491)
220 PF00854 PTR2: POT family; In 43.2 15 0.00032 36.1 1.9 29 92-121 97-125 (372)
221 PRK11102 bicyclomycin/multidru 42.7 3.1E+02 0.0066 26.1 11.6 81 55-144 290-371 (377)
222 KOG2532 Permease of the major 40.3 38 0.00082 34.8 4.4 52 93-144 392-446 (466)
223 COG2211 MelB Na+/melibiose sym 37.9 4.7E+02 0.01 26.9 13.2 79 56-139 116-201 (467)
224 KOG2927 Membrane component of 37.5 35 0.00075 33.5 3.4 55 279-341 183-237 (372)
225 KOG4112 Signal peptidase subun 37.4 1E+02 0.0022 24.4 5.2 51 97-150 26-76 (101)
226 PF05631 DUF791: Protein of un 35.4 4.5E+02 0.0098 26.0 12.4 94 51-145 120-216 (354)
227 COG2270 Permeases of the major 33.5 5.4E+02 0.012 26.3 19.3 42 305-346 364-405 (438)
228 TIGR00788 fbt folate/biopterin 33.4 1.4E+02 0.003 30.4 7.3 71 61-137 360-435 (468)
229 PF03219 TLC: TLC ATP/ADP tran 32.7 75 0.0016 32.9 5.1 28 92-119 178-205 (491)
230 PF00083 Sugar_tr: Sugar (and 32.1 0.98 2.1E-05 45.2 -8.6 80 52-137 102-184 (451)
231 TIGR00886 2A0108 nitrite extru 31.9 2.2E+02 0.0047 27.0 8.1 60 76-143 27-86 (366)
232 PRK15462 dipeptide/tripeptide 31.1 3.4E+02 0.0075 28.1 9.7 89 4-117 348-437 (493)
233 COG2807 CynX Cyanate permease 30.9 3.5E+02 0.0075 27.2 9.1 84 59-150 303-391 (395)
234 TIGR00806 rfc RFC reduced fola 30.4 1.7E+02 0.0037 30.4 7.2 38 304-341 136-173 (511)
235 PF12670 DUF3792: Protein of u 27.5 3E+02 0.0065 22.3 7.0 51 93-143 36-87 (116)
236 PRK15034 nitrate/nitrite trans 27.4 6.9E+02 0.015 25.6 11.1 93 51-143 344-452 (462)
237 PF07332 DUF1469: Protein of u 25.4 3.3E+02 0.0072 21.8 7.0 27 124-150 72-99 (121)
238 PF03839 Sec62: Translocation 23.6 1.1E+02 0.0023 28.3 3.9 48 281-338 106-155 (224)
239 COG2271 UhpC Sugar phosphate p 23.6 39 0.00084 34.3 1.1 39 105-143 394-432 (448)
240 KOG0252 Inorganic phosphate tr 22.9 1.9E+02 0.0041 30.1 5.8 88 51-143 143-241 (538)
241 TIGR00901 2A0125 AmpG-related 22.6 2.1E+02 0.0045 27.2 6.1 46 53-104 310-355 (356)
242 PF00083 Sugar_tr: Sugar (and 21.6 11 0.00025 37.5 -3.1 67 68-140 365-431 (451)
243 PF09515 Thia_YuaJ: Thiamine t 21.5 4.9E+02 0.011 23.0 7.6 41 279-319 101-144 (177)
244 KOG3762 Predicted transporter 21.1 1.5E+02 0.0032 31.4 4.7 38 302-339 479-521 (618)
245 PF11027 DUF2615: Protein of u 20.9 1.4E+02 0.003 24.1 3.6 28 125-152 54-81 (103)
246 COG1575 MenA 1,4-dihydroxy-2-n 20.8 7.7E+02 0.017 23.9 9.8 20 3-22 96-115 (303)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-69 Score=557.37 Aligned_cols=360 Identities=41% Similarity=0.657 Sum_probs=323.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccC
Q 017117 2 LVFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 81 (377)
Q Consensus 2 ~~i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf 81 (377)
.||.+++++|++|+.+|++++.+|.++|+ +| ........|++++..|...||.+|+++++|+||+|||+.++++|||
T Consensus 105 ~tI~~~s~i~~~G~~~lt~~a~~~~l~p~--~~-~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQf 181 (571)
T KOG1237|consen 105 FTINIGSLISLLGLFGLTLSAMIPALLPF--MC-KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQF 181 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCc--cc-cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhccccc
Confidence 48999999999999999999999999988 76 1111244799999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhcccccccCCCCCCchhHH
Q 017117 82 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV 161 (377)
Q Consensus 82 ~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~g~~~y~~~~p~gs~l~~~ 161 (377)
|+.+++++..+.++|||||+.+|+|++++.++.+|+|++.||.+||++|+++|++++++|+.|++.|++++|.|+|++++
T Consensus 182 d~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i 261 (571)
T KOG1237|consen 182 DELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRI 261 (571)
T ss_pred CccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHH
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccCcccccccccCCCcccccCCcccccCCCcchhhHHHhhhcccc---CCCCCcccccchhhhHhh
Q 017117 162 AQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDV---INPSPWKLCTVTQVEEVK 238 (377)
Q Consensus 162 ~~vi~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~---~~~~~w~l~~~~~vee~k 238 (377)
.+|++++++|++...+.++++ + +. .........+++.++++|+|+++...+. ...+||++|+++||||+|
T Consensus 262 ~~Vlvaa~~k~~~~~~~~~~~-~-~~-----~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K 334 (571)
T KOG1237|consen 262 GQVLVAAAFKRKAVVSLDPEE-L-YY-----DCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVK 334 (571)
T ss_pred HHHHHHHHHHHhccCCCcchh-c-cc-----cccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhh
Confidence 999999999998877766433 2 11 1112223456788999999998754422 235899999999999999
Q ss_pred HhhhhhhhhhhHHHHHHHHhhchhHHHHHHHHhhccc--------------------------------------CCCCC
Q 017117 239 TLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM--------------------------------------GHPRG 280 (377)
Q Consensus 239 ~~~~~l~l~~~~iif~~~~~Q~~t~~~~qa~~md~~~--------------------------------------~~~~~ 280 (377)
+++|++|+|.+.++||+++.|+.|.++.||.+|||++ +++++
T Consensus 335 ~~lr~~Pi~~~~i~~~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~ 414 (571)
T KOG1237|consen 335 AVLRLLPIWLTTIIYSTVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFG 414 (571)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCC
Confidence 9999999999999999999999999999999999987 33457
Q ss_pred CCchhHHHHHHHHHHHHHHHH------------------------------------------HHHHHHhhccCchhhHH
Q 017117 281 ASQLQRVGIGLAVSILSVIWA------------------------------------------GLLEFLYEEAPDAMKSI 318 (377)
Q Consensus 281 ~s~l~ri~iG~~l~~la~~~a------------------------------------------~~~E~~~~~aP~~m~s~ 318 (377)
++++|||++|+++++++|+++ |++||+|+|||++|||+
T Consensus 415 ~t~lqrig~G~~~si~sm~~aa~vE~krl~~~~~~~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~ 494 (571)
T KOG1237|consen 415 ITPLQRIGIGLVLSILSMAVAGIVEAKRLKTAVSLLVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSV 494 (571)
T ss_pred CChhheeeccchHHHHHHHHHHHHHHHHhhhhhhccCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHH
Confidence 899999999999999999887 78999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCC-CCCCcCchhHHHHHHhhc
Q 017117 319 GSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLA-QNINTDTSTGLSRSMAMT 375 (377)
Q Consensus 319 ~~gl~~l~~a~G~~l~~~l~~lv~~~t~~~~~~~~~W~~-~~ln~~~ld~~y~~l~~~ 375 (377)
++++|+++.|+||+++.+|++++++.|+ + ..+|++ +|+|++|+|||||+++.+
T Consensus 495 ~~al~l~t~a~G~~lss~Lv~~v~~~t~--~--~~~w~~~~~ln~~~ld~Fy~lla~~ 548 (571)
T KOG1237|consen 495 ATALWLLTVAVGNYLSSVLVSLVQFSTG--K--AAEWLGFANLNKGRLDYFYWLLAVY 548 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--C--CcccCChhHhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999885 3 468999 999999999999999875
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=9.9e-44 Score=351.98 Aligned_cols=280 Identities=16% Similarity=0.222 Sum_probs=219.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCC
Q 017117 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (377)
Q Consensus 3 ~i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~ 82 (377)
||+.|++++.+||++|+.++. .....+|+||.+|++|+|++|||+++++||||+
T Consensus 94 tI~lGail~~iGh~~L~~~~~--------------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~ 147 (498)
T COG3104 94 TIVLGAILMAIGHLVLAISSV--------------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYP 147 (498)
T ss_pred HHHHHHHHHHHHHHHHhcccc--------------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcC
Confidence 799999999999999998651 124579999999999999999999999999999
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhcccccccCC--CCCCchhH
Q 017117 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL--PGGSPLTR 160 (377)
Q Consensus 83 ~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~g~~~y~~~~--p~gs~l~~ 160 (377)
++||| ||.+|+.||+++|+|+++++++++|+++++|||.||++++++|.+++++|+++++++...+ |+.+|+..
T Consensus 148 ~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~ 223 (498)
T COG3104 148 KDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSF 223 (498)
T ss_pred CCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhh
Confidence 99996 9999999999999999999999999999999999999999999999999999999988763 33344322
Q ss_pred ------HHHHHHHHHHh--ccccccCcccccccccCCCcccccCCcccccCCCcchh-hHHHhhhccccCCCCCcccccc
Q 017117 161 ------VAQVLVAAFRK--RHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL-DKAALELKEDVINPSPWKLCTV 231 (377)
Q Consensus 161 ------~~~vi~~a~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~a~~~~~~~~~~~~~w~l~~~ 231 (377)
...+++..+.. ... ...+ .+.. . ..-. -...+.+..+ ...| ++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~-l~~~----~~~~-----------~------~~~~~i~~~~~~~~~---~~~~---~~ 275 (498)
T COG3104 224 NFLLPVLGGLVVMILAALLTLL-LNQN----TFSG-----------V------LLVISILIAIIYFAE---AFRS---PK 275 (498)
T ss_pred hhhhhhHHHHHHHHHHHHHHHH-HHHH----HHHH-----------H------HHHHHHHHHHHHHHH---Hhcc---Cc
Confidence 11111111110 000 0000 0000 0 0000 0001111111 0122 23
Q ss_pred hhhhHhhHhhhhhhhhhhHHHHHHHHhhchhHHHHHHHH-hhccc---------------------------------CC
Q 017117 232 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM---------------------------------GH 277 (377)
Q Consensus 232 ~~vee~k~~~~~l~l~~~~iif~~~~~Q~~t~~~~qa~~-md~~~---------------------------------~~ 277 (377)
++ ||+||+++++|+|++.++||++|+|++|++++||++ .||+. ++
T Consensus 276 ~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~ 354 (498)
T COG3104 276 VF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRG 354 (498)
T ss_pred cH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcC
Confidence 45 999999999999999999999999999999999987 68882 44
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHH-----------------------------------HHHHHHhhccCchhhHHHHHH
Q 017117 278 PRGASQLQRVGIGLAVSILSVIWA-----------------------------------GLLEFLYEEAPDAMKSIGSAY 322 (377)
Q Consensus 278 ~~~~s~l~ri~iG~~l~~la~~~a-----------------------------------~~~E~~~~~aP~~m~s~~~gl 322 (377)
++.|+++.||++|++++++++++. +++|+.+++||++|+|++||+
T Consensus 355 ~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~ 434 (498)
T COG3104 355 NKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAM 434 (498)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHH
Confidence 577999999999999999999875 689999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 017117 323 AALAGGLGCFAASILNSII 341 (377)
Q Consensus 323 ~~l~~a~G~~l~~~l~~lv 341 (377)
|+++++.|+.+++.+.++.
T Consensus 435 wfLt~a~~~~l~g~va~~~ 453 (498)
T COG3104 435 WFLTVAAGQTLGGQVAGLT 453 (498)
T ss_pred HHHHHHHHHHhhceecccc
Confidence 9999999999999998853
No 3
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=100.00 E-value=1e-43 Score=351.03 Aligned_cols=266 Identities=32% Similarity=0.495 Sum_probs=185.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCC
Q 017117 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (377)
Q Consensus 3 ~i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~ 82 (377)
||++|+++|++||++|++++. |...+ ++.+.+.+|+||++|++|+|++|||+++|+|||||
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~-~~~~~------------------~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~ 63 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAI-PPSLP------------------SGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYD 63 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHT-SSSC------------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSS
T ss_pred hhhHHHHHHHHHHHHhHHHHh-cchhh------------------hhHHHHHHHHHHHHHHhccccccccHHHHHHHHhc
Confidence 899999999999999999998 43321 34568899999999999999999999999999999
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhcccccccC-CCCCCchhH-
Q 017117 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR-LPGGSPLTR- 160 (377)
Q Consensus 83 ~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~g~~~y~~~-~p~gs~l~~- 160 (377)
++++ +++|++|+||||++|+|++++.++++|+|+++||+++|++|+++|++++++|+.++++|+++ +|.|+++.+
T Consensus 64 ~~~~---~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~ 140 (372)
T PF00854_consen 64 EDDD---SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNF 140 (372)
T ss_dssp TTTT---THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--
T ss_pred ccch---hhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchh
Confidence 8752 35999999999999999999999999999999999999999999999999999999999999 889999888
Q ss_pred HHHHHHHHHHhccccccCcccccccccCCCcccccCCcccccCCCcchhhHHHhhhccccCCCCCcc-cccchhhhHhhH
Q 017117 161 VAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWK-LCTVTQVEEVKT 239 (377)
Q Consensus 161 ~~~vi~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~w~-l~~~~~vee~k~ 239 (377)
...++.++.+++....|.+... +++..... .... ........+.+...... ...|. .|+++++|++|.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~k~ 209 (372)
T PF00854_consen 141 IKLVLVAAFKKRKLAVPKGSSW-LDWALFQY----SERS--IFGIIVFIRAAVIFFPE----IFFWALFCQVQRVEELKA 209 (372)
T ss_dssp SHHHHHHHHHHHCCCH-HHHHH-HHHHHHHH----CCCC--CCCCCCHHHHHHHHCCC----HHHHTTTSSTTTHHHCCH
T ss_pred HHHHHHHHHHHhhcccccchHH-HHHhhhhh----hhhh--hhhhhhhccchhhhhhh----hhhcccCCccceeeeeee
Confidence 5555666666665544322111 11110000 0000 00111111211111111 01222 266788999999
Q ss_pred hhhhhhhhhhHHHHHHHHhhchhHHHHHHHHhhccc----------------------------------CCCCCCCchh
Q 017117 240 LVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM----------------------------------GHPRGASQLQ 285 (377)
Q Consensus 240 ~~~~l~l~~~~iif~~~~~Q~~t~~~~qa~~md~~~----------------------------------~~~~~~s~l~ 285 (377)
+.+.+|++.+.++|+..+.|.++....|+.+||+.+ ++++++++++
T Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~~~~~~~~~ 289 (372)
T PF00854_consen 210 LIRFLPIFLFWIFYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRRGIQPSPPQ 289 (372)
T ss_dssp HHCHHHCCCHHHHHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT------HH
T ss_pred eeeccccCeEEEEeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhhhcccchhhh
Confidence 999999999999999999999999999999997654 6667899999
Q ss_pred HHHHHHHHHHHHHHHH
Q 017117 286 RVGIGLAVSILSVIWA 301 (377)
Q Consensus 286 ri~iG~~l~~la~~~a 301 (377)
|+++|+++++++++++
T Consensus 290 k~~~G~~~~~~~~~~~ 305 (372)
T PF00854_consen 290 KFGIGMVFAILAMFVA 305 (372)
T ss_dssp HHHHH-HHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHH
Confidence 9999999999999865
No 4
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=100.00 E-value=1.5e-41 Score=355.63 Aligned_cols=240 Identities=25% Similarity=0.405 Sum_probs=203.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccC
Q 017117 2 LVFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQF 81 (377)
Q Consensus 2 ~~i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf 81 (377)
.||++++++|.+|++++++++. |.... ..+...++++|+++++|+|++|||++++++|||
T Consensus 55 ~tIl~~~ii~~lG~~llai~a~-~~~~~-------------------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf 114 (654)
T TIGR00926 55 KTILYLSIVYVVGHALLSFGAI-PSSGH-------------------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQF 114 (654)
T ss_pred HHHHHHHHHHHHHHHHHHhccC-ccccc-------------------chHHHHHHHHHHHHHhhccccccCchhhhHhhc
Confidence 4799999999999999999776 32211 124567889999999999999999999999999
Q ss_pred CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chhhHHHHHHHHHHHHHHHHHhcccccccCCCC
Q 017117 82 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-------GWGSAFGALAIAMGISNMLFFIGTPLYRHRLPG 154 (377)
Q Consensus 82 ~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~-------g~~~gF~i~~i~m~~~l~~f~~g~~~y~~~~p~ 154 (377)
+++++ ++++++|+||||++|+|+++++++++|+++++ ||+++|++|+++|++++++|+.++++|++.||.
T Consensus 115 ~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~ 191 (654)
T TIGR00926 115 EERQL---SLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPK 191 (654)
T ss_pred Cccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Confidence 87544 35899999999999999999999999999664 699999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHhccccccCcccccccccCCCcccccCCcccccCCCcchhhHHHhhhccccCCCCCcccccchhh
Q 017117 155 GSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQV 234 (377)
Q Consensus 155 gs~l~~~~~vi~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~w~l~~~~~v 234 (377)
|+++.++.++++.+++++....+. + ...+|+|+++.. ..+++|
T Consensus 192 gs~l~~v~~vi~~a~~~~~~~~~~-----------------------~-~~~~~ld~a~~~-------------~~~~~V 234 (654)
T TIGR00926 192 GNIVSKVIKCIVTALRKRFSTRSE-----------------------H-WPLHWLDYAKDK-------------HDIRMI 234 (654)
T ss_pred ccHHHHHHHHHHHHHHHhhccCCc-----------------------c-cchhHHHHhccc-------------cccchH
Confidence 999999999988888765321110 0 113577776542 135679
Q ss_pred hHhhHhhhhhhhhhhHHHHHHHHhhchhHHHHHHHHhhccc----------------------------------CCCCC
Q 017117 235 EEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTHM----------------------------------GHPRG 280 (377)
Q Consensus 235 ee~k~~~~~l~l~~~~iif~~~~~Q~~t~~~~qa~~md~~~----------------------------------~~~~~ 280 (377)
||+|++++++++++..++||++++|++|++++||++||+++ |++.+
T Consensus 235 ~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~ 314 (654)
T TIGR00926 235 RSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR 314 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999874 44567
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 017117 281 ASQLQRVGIGLAVSILSVIWA 301 (377)
Q Consensus 281 ~s~l~ri~iG~~l~~la~~~a 301 (377)
+++++|+++|+++++++++++
T Consensus 315 ls~l~k~~iG~~la~la~~va 335 (654)
T TIGR00926 315 FTSLRKMAVGGLLAALSFFVA 335 (654)
T ss_pred CChHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999887
No 5
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=2.9e-31 Score=269.81 Aligned_cols=276 Identities=15% Similarity=0.152 Sum_probs=205.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCC
Q 017117 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (377)
Q Consensus 3 ~i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~ 82 (377)
++++|.++..+|+.++..... ....+++++.++++|+|++|||.+++++|+|+
T Consensus 78 ~iliG~il~~lg~lll~~~~~---------------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp 130 (493)
T PRK15462 78 AVMLGALLMAIGHVVLGASEI---------------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYE 130 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhc---------------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCC
Confidence 567888888888876653211 11246778889999999999999999999999
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhcccccccCCC-CCCchh--
Q 017117 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP-GGSPLT-- 159 (377)
Q Consensus 83 ~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~g~~~y~~~~p-~gs~l~-- 159 (377)
++|++ |+++|+++|+++|+|+++++++++++++++||+++|++++++|++++++|+.+++++.+..+ +.+|..
T Consensus 131 ~~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~ 206 (493)
T PRK15462 131 PTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRAT 206 (493)
T ss_pred CCCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhh
Confidence 88764 89999999999999999999999999999999999999999999999999999888755311 112221
Q ss_pred HHHHHH-----HHH-----HHhccccccCcccccccccCCCcccccCCcccccCCCcchh-hHHH---hhhccccCCCCC
Q 017117 160 RVAQVL-----VAA-----FRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCL-DKAA---LELKEDVINPSP 225 (377)
Q Consensus 160 ~~~~vi-----~~a-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~a~---~~~~~~~~~~~~ 225 (377)
+....+ ... ...... .+ .....+ -... ..+.... ...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-----------------~~~~~~~~~~~~~~~~~~~~~-~~~- 257 (493)
T PRK15462 207 NFLLPNWGWLLVLLVATPALITVLF----------WK-----------------EWSVYALIVATIIGLGVLAKI-YRK- 257 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH----------HH-----------------HHHHHHHHHHHHHHHHHHHHH-HHh-
Confidence 110000 000 000000 00 000000 0000 0000000 000
Q ss_pred cccccchhhhHhhHhhhhhhhhhhHHHHHHHHhhchhHHHHHHHH-hhccc-----------------------------
Q 017117 226 WKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM----------------------------- 275 (377)
Q Consensus 226 w~l~~~~~vee~k~~~~~l~l~~~~iif~~~~~Q~~t~~~~qa~~-md~~~----------------------------- 275 (377)
. ...||+||+..++++++..++||+.|+|++|+++++|++ +||++
T Consensus 258 ----~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw 332 (493)
T PRK15462 258 ----A-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVV 332 (493)
T ss_pred ----c-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHH
Confidence 1 124889999999999999999999999999999999986 99996
Q ss_pred ----CCCCCCCchhHHHHHHHHHHHHHHHH----------------------------------HHHHHHhhccCchhhH
Q 017117 276 ----GHPRGASQLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKS 317 (377)
Q Consensus 276 ----~~~~~~s~l~ri~iG~~l~~la~~~a----------------------------------~~~E~~~~~aP~~m~s 317 (377)
|++++|+.+.|+++|++++++++++. .++++.+|.||++++|
T Consensus 333 ~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g 412 (493)
T PRK15462 333 KESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTG 412 (493)
T ss_pred HHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHH
Confidence 35668999999999999999998654 4666789999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHhhhhhhcc
Q 017117 318 IGSAYAALAG-GLGCFAASILNSIIKS 343 (377)
Q Consensus 318 ~~~gl~~l~~-a~G~~l~~~l~~lv~~ 343 (377)
++||+|+++. ++|+.+++.+.++...
T Consensus 413 ~~mg~w~l~~~~~~~~~~g~~~~~~~~ 439 (493)
T PRK15462 413 VLTGIYMLLSGAIANYLAGVIADQTSQ 439 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999965 8999999999998753
No 6
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.97 E-value=1.2e-28 Score=252.04 Aligned_cols=281 Identities=11% Similarity=0.151 Sum_probs=205.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCC
Q 017117 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (377)
Q Consensus 3 ~i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~ 82 (377)
++++|.+++.+|++++.++.. ....+++++.++++|+|++|||.+++++|||+
T Consensus 83 ~~~~g~~~~~~g~~~~~~~~~---------------------------~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p 135 (489)
T PRK10207 83 TIVLGAIVLAIGYFMTGMSLL---------------------------KPDLIFIALGTIAVGNGLFKANPASLLSKCYP 135 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---------------------------chhHHHHHHHHHHhccccccCCHHHHHHHhcC
Confidence 578889999999988876422 01246789999999999999999999999998
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhcccccccC--CCCCCchh-
Q 017117 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLT- 159 (377)
Q Consensus 83 ~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~g~~~y~~~--~p~gs~l~- 159 (377)
++++| |++.|++||+++|+|+++++++++++.+++||+++|.++++++.++++.+..+++++++. +|+++++.
T Consensus 136 ~~~~~----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 211 (489)
T PRK10207 136 PKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSF 211 (489)
T ss_pred CCchh----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhh
Confidence 76643 688999999999999999999999999999999999999999999999999998887664 34444431
Q ss_pred -HHHHHHHH---HHHhccccccCcccccccccCCCcccccCCcccccCCCcchhhHHHhhhccccCCCCCcccccchhhh
Q 017117 160 -RVAQVLVA---AFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVE 235 (377)
Q Consensus 160 -~~~~vi~~---a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~w~l~~~~~ve 235 (377)
....+... ..-... ...++.. . .. ..+..+....... .-++..+.+ .+
T Consensus 212 ~~~~l~~~~~~~~~~~~~-~~~~~~~--~------------------~~--~~~~~~~~i~~~~----f~~~~~~~~-~~ 263 (489)
T PRK10207 212 SKLLLVLLGSVVMIFVCA-WLMHNVE--V------------------AN--LVLIVLSIVVTII----FFREAFKLD-KT 263 (489)
T ss_pred hhHHHHHHHHHHHHHHHH-HHHhhhh--H------------------HH--HHHHHHHHHHHHH----HHHHHhcCC-HH
Confidence 11111100 000000 0000000 0 00 0000000000000 000001112 35
Q ss_pred HhhHhhhhhhhhhhHHHHHHHHhhchhHHHHHHHH-hhccc---------------------------------CCCCCC
Q 017117 236 EVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM---------------------------------GHPRGA 281 (377)
Q Consensus 236 e~k~~~~~l~l~~~~iif~~~~~Q~~t~~~~qa~~-md~~~---------------------------------~~~~~~ 281 (377)
++++.+..+++++..++||++++|+.+++++|+++ +|++. +|+.++
T Consensus 264 ~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~ 343 (489)
T PRK10207 264 GRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDL 343 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 57778888999999999999999999999999985 77643 456689
Q ss_pred CchhHHHHHHHHHHHHHHHH-----------------------------------HHHHHHhhccCchhhHHHHHHHHHH
Q 017117 282 SQLQRVGIGLAVSILSVIWA-----------------------------------GLLEFLYEEAPDAMKSIGSAYAALA 326 (377)
Q Consensus 282 s~l~ri~iG~~l~~la~~~a-----------------------------------~~~E~~~~~aP~~m~s~~~gl~~l~ 326 (377)
++++|+++|+++++++++++ +++|++++.+|++++|++||+|+++
T Consensus 344 ~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~ 423 (489)
T PRK10207 344 SMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLT 423 (489)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 99999999999999888531 5688899999999999999999999
Q ss_pred HHHHHHHHHhhhhhhc
Q 017117 327 GGLGCFAASILNSIIK 342 (377)
Q Consensus 327 ~a~G~~l~~~l~~lv~ 342 (377)
.++|+.+++.+.+++.
T Consensus 424 ~~ig~~lg~~l~~~~~ 439 (489)
T PRK10207 424 QAAAFLLGGYVATFTA 439 (489)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998875
No 7
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.96 E-value=7.7e-27 Score=238.09 Aligned_cols=282 Identities=15% Similarity=0.150 Sum_probs=204.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCC
Q 017117 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (377)
Q Consensus 3 ~i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~ 82 (377)
++.++.+++.+|++++.++. +...+++++.++++|+|++|||.+++++|+|+
T Consensus 81 ~l~~~~~~~~~g~~~~~~~~----------------------------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~ 132 (475)
T TIGR00924 81 TMVLGGIVLMLGHFMLAMSI----------------------------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYE 132 (475)
T ss_pred HHHHHHHHHHHHHHHHHhcc----------------------------cHhHHHHHHHHHHhccccccCCHHHHHHHhcC
Confidence 57788888888887776531 12457788999999999999999999999998
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhcccccccCCCCCCchhHH-
Q 017117 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLPGGSPLTRV- 161 (377)
Q Consensus 83 ~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~g~~~y~~~~p~gs~l~~~- 161 (377)
+++++ +|+++|+++|+++|+|+++++.+.+++++++||+++|.++++.+++++++|+.+++.|++.|+++++..+.
T Consensus 133 ~~~~~---~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 209 (475)
T TIGR00924 133 RGDMP---RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQG 209 (475)
T ss_pred CCCcc---cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhh
Confidence 76532 37889999999999999999999999999999999999999999999999999998887666544433210
Q ss_pred ----H--HHH----HHHHHhccccccCcccccccccCCCcccccCCcccccCCCcchhhHHHhhhccccCCCCCcccccc
Q 017117 162 ----A--QVL----VAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTV 231 (377)
Q Consensus 162 ----~--~vi----~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~w~l~~~ 231 (377)
. +.+ ...++.... ..++.. . ..+.+ ....+..++.... ..+| +.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~-----------~~~~~-----~~~~~~~~~~~~~-~~~~----~~ 263 (475)
T TIGR00924 210 KTYGKLLLALLAALALVFFCAWL-MHHVVI----A-----------NILLM-----TVTLAVIIFFFRL-AFKP----RL 263 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HhccHH----H-----------HHHHH-----HHHHHHHHHHHHH-HHhc----cC
Confidence 0 000 011111100 000000 0 00000 0011111111000 0011 12
Q ss_pred hhhhHhhHhhhhhhhhhhHHHHHHHHhhchhHHHHHHHH-hhccc---------------------------------CC
Q 017117 232 TQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM---------------------------------GH 277 (377)
Q Consensus 232 ~~vee~k~~~~~l~l~~~~iif~~~~~Q~~t~~~~qa~~-md~~~---------------------------------~~ 277 (377)
++ +|+++..+++++++..++||++|+|+.+++.+|+++ ||+++ +|
T Consensus 264 ~~-~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~ 342 (475)
T TIGR00924 264 DA-VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK 342 (475)
T ss_pred CH-HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 33 344556779999999999999999999999988764 88773 44
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHH----------------------------------HHHHHHhhccCchhhHHHHHHH
Q 017117 278 PRGASQLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYA 323 (377)
Q Consensus 278 ~~~~s~l~ri~iG~~l~~la~~~a----------------------------------~~~E~~~~~aP~~m~s~~~gl~ 323 (377)
++++++..||++|+++.+++++++ ++.|+.++++|+++||.++|+|
T Consensus 343 ~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~ 422 (475)
T TIGR00924 343 GKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMW 422 (475)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHH
Confidence 467899999999999999988653 4677889999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhc
Q 017117 324 ALAGGLGCFAASILNSIIK 342 (377)
Q Consensus 324 ~l~~a~G~~l~~~l~~lv~ 342 (377)
.++.++|+++++.+.+...
T Consensus 423 ~l~~~~g~~l~~~~~~~~~ 441 (475)
T TIGR00924 423 FLAQAMGSLLGGYLATFGA 441 (475)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 8
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.95 E-value=3.6e-26 Score=234.57 Aligned_cols=279 Identities=11% Similarity=0.155 Sum_probs=201.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCC
Q 017117 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (377)
Q Consensus 3 ~i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~ 82 (377)
+++++.+++.+|+.++.+++. ....+++++.++++|+|+++|+..++++|+|+
T Consensus 90 ~~~~g~~~~~ig~~l~~~~~~---------------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~ 142 (500)
T PRK09584 90 VIMLGAIVLAIGYALVAWSGH---------------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYE 142 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---------------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcC
Confidence 567778888888777765321 12457788999999999999999999999998
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhcccccccC--CCCCCchhH
Q 017117 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHR--LPGGSPLTR 160 (377)
Q Consensus 83 ~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~g~~~y~~~--~p~gs~l~~ 160 (377)
+++++ +++.|+++|+++|+|+++++++.+++.+++||+++|.++++.++++++.|+..++.+++. +|+++|+..
T Consensus 143 ~~~~~----~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~ 218 (500)
T PRK09584 143 KDDPR----LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINY 218 (500)
T ss_pred CCchh----hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccch
Confidence 76543 678999999999999999999999999999999999999999999999998887766654 344443321
Q ss_pred --H----HHHHHHHH-HhccccccCcccccccccCCCcccccCCcccccCCCcchhhHHHhhhccccCCCCCcccccchh
Q 017117 161 --V----AQVLVAAF-RKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQ 233 (377)
Q Consensus 161 --~----~~vi~~a~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~w~l~~~~~ 233 (377)
. ..+..... .......++ ... . ...+.......... .+.+..++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------------~-----~~~~~~~~~~~~~~-------~~~~~~~~ 269 (500)
T PRK09584 219 RKLLLTIVGVVALIAIATWLLHNQE-----IAR------------M-----ALGVVALGIVVIFG-------KEAFAMKG 269 (500)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcch-----HHH------------H-----HHHHHHHHHHHHHH-------HHHhhcCH
Confidence 1 11111111 111000000 000 0 00000000000000 00012233
Q ss_pred hhHhhHhhhhhhhhhhHHHHHHHHhhchhHHHHHHHH-hhccc------------------------------CCCCCCC
Q 017117 234 VEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNTHM------------------------------GHPRGAS 282 (377)
Q Consensus 234 vee~k~~~~~l~l~~~~iif~~~~~Q~~t~~~~qa~~-md~~~------------------------------~~~~~~s 282 (377)
+|+|+++..+++++..++||++++|+++.++.|+.+ +|+++ |.+++++
T Consensus 270 -~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~ 348 (500)
T PRK09584 270 -AARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLP 348 (500)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCC
Confidence 566777888999999999999999999999999976 67653 3344577
Q ss_pred chhHHHHHHHHHHHHHHHH----------------------------------HHHHHHhhccCchhhHHHHHHHHHHHH
Q 017117 283 QLQRVGIGLAVSILSVIWA----------------------------------GLLEFLYEEAPDAMKSIGSAYAALAGG 328 (377)
Q Consensus 283 ~l~ri~iG~~l~~la~~~a----------------------------------~~~E~~~~~aP~~m~s~~~gl~~l~~a 328 (377)
+.+|+++|+++.++++++. .++|+.++++|+++||++||+|+++.+
T Consensus 349 ~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a 428 (500)
T PRK09584 349 MPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTA 428 (500)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 8999999999999998762 467888999999999999999999999
Q ss_pred HHHHHHHhhhhhhc
Q 017117 329 LGCFAASILNSIIK 342 (377)
Q Consensus 329 ~G~~l~~~l~~lv~ 342 (377)
+|+++++.+.+.+.
T Consensus 429 ~g~~~~g~~~~~~~ 442 (500)
T PRK09584 429 GAALIAGYVANLMA 442 (500)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
No 9
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.88 E-value=1.7e-07 Score=99.28 Aligned_cols=208 Identities=11% Similarity=-0.027 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCCCC
Q 017117 5 FFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER 84 (377)
Q Consensus 5 ~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~ 84 (377)
..-++.++++.+.+++.++ +.. +...+.....++++.++++++|.+++.+++.++|.|..
T Consensus 55 ~tIl~~~ii~~lG~~llai-~a~-------------------~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf 114 (654)
T TIGR00926 55 KTILYLSIVYVVGHALLSF-GAI-------------------PSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQF 114 (654)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccC-------------------cccccchHHHHHHHHHHHHHhhccccccCchhhhHhhc
Confidence 3445666666676766654 221 12444566778899999999999999999999999976
Q ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH-------HHHHHHHHHHHHHHHHhcccccccCCCCCCc
Q 017117 85 SKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSA-------FGALAIAMGISNMLFFIGTPLYRHRLPGGSP 157 (377)
Q Consensus 85 ~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~g-------F~i~~i~m~~~l~~f~~g~~~y~~~~p~gs~ 157 (377)
++ +++++.+++|||..+.+.+.+.+....+.....+..+ ++..++.+++.++.++.+...++..++.+.+
T Consensus 115 ~~---~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~ 191 (654)
T TIGR00926 115 EE---RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPK 191 (654)
T ss_pred Cc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCC
Confidence 63 5566899999999999998765444444433346543 3489999999999999999888887887665
Q ss_pred hhHHHHHHHHHHHhccccccCcccccccccCCCcccccCCcccccCCCcchhhHHHhhhccccCCCCCccc--ccchhhh
Q 017117 158 LTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDKAALELKEDVINPSPWKL--CTVTQVE 235 (377)
Q Consensus 158 l~~~~~vi~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~w~l--~~~~~ve 235 (377)
-..+.+++..+....+. +..+. +... ...|-. ....+++
T Consensus 192 gs~l~~v~~vi~~a~~~------------------------~~~~~------~~~~---------~~~~ld~a~~~~~~~ 232 (654)
T TIGR00926 192 GNIVSKVIKCIVTALRK------------------------RFSTR------SEHW---------PLHWLDYAKDKHDIR 232 (654)
T ss_pred ccHHHHHHHHHHHHHHH------------------------hhccC------Cccc---------chhHHHHhccccccc
Confidence 55555665444332210 00000 0000 012322 2333457
Q ss_pred HhhHhhhhhhhhhhHHHHHHHHhhchhHHHHHHHHhhcc
Q 017117 236 EVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH 274 (377)
Q Consensus 236 e~k~~~~~l~l~~~~iif~~~~~Q~~t~~~~qa~~md~~ 274 (377)
+++.+.++++++...+.+|+.+.|....++.|+.++++.
T Consensus 233 ~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m 271 (654)
T TIGR00926 233 MIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRM 271 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHh
Confidence 789999999999999999999999999999999999976
No 10
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.61 E-value=9.3e-06 Score=78.62 Aligned_cols=85 Identities=21% Similarity=0.259 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++..+.++|.|..-|...+...|.++++ +|...++++....++|.++++.+.+++.++.||++.|.+.+
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPAS------ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEG 155 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH------HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 456778888999999999999999999998742 36789999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH
Q 017117 132 IAMGISNMLFF 142 (377)
Q Consensus 132 i~m~~~l~~f~ 142 (377)
+..++..+...
T Consensus 156 ~~~~~~~~~~~ 166 (399)
T TIGR00893 156 VLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHHHhh
Confidence 77666555443
No 11
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.59 E-value=1.1e-05 Score=77.84 Aligned_cols=86 Identities=17% Similarity=0.112 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~ 130 (377)
+.+.++++..+.++|.|...|...++..|.++++ +|.+.++++..+.++|.++++.+.+++.++.||++.|.+.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEE------QLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3567788888999999999999999999999743 3788999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHH
Q 017117 131 AIAMGISNMLFF 142 (377)
Q Consensus 131 ~i~m~~~l~~f~ 142 (377)
++..+++.+...
T Consensus 165 ~~~~~~~~~~~~ 176 (365)
T TIGR00900 165 AVGFAISALLIV 176 (365)
T ss_pred HHHHHHHHHHHH
Confidence 887776655443
No 12
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.44 E-value=1.9e-05 Score=75.76 Aligned_cols=83 Identities=25% Similarity=0.370 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i 132 (377)
+.++++..+.++|.|...|...++..|.+++++ |...++++..+.++|..+++.+.+++.++.||++.|.+.++
T Consensus 86 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~ 159 (352)
T PF07690_consen 86 WLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAI 159 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHH
T ss_pred HHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhccccccccccccc
Confidence 468888999999999999999999999999743 67899999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 017117 133 AMGISNMLF 141 (377)
Q Consensus 133 ~m~~~l~~f 141 (377)
..+++.++.
T Consensus 160 ~~~~~~il~ 168 (352)
T PF07690_consen 160 LSLIAAILF 168 (352)
T ss_dssp HHHHHHHHH
T ss_pred hhhhhhhhH
Confidence 999887753
No 13
>TIGR00895 2A0115 benzoate transport.
Probab=98.42 E-value=5.3e-05 Score=73.90 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++..+.++|.|+.-|...+...|.++++ +|...++++..+.++|..+++.+.+++.++.||+..|.+.+
T Consensus 105 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~ 178 (398)
T TIGR00895 105 VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKR------FRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGG 178 (398)
T ss_pred hHHHHHHHHHHhcccccchhhHHHHHHHHcCHH------hhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhh
Confidence 345777888999999999999999999998742 36788899999999999999999999999999999999986
Q ss_pred HHHHHHHHH
Q 017117 132 IAMGISNML 140 (377)
Q Consensus 132 i~m~~~l~~ 140 (377)
+...+..++
T Consensus 179 ~~~~~~~~~ 187 (398)
T TIGR00895 179 IAPLLLLLL 187 (398)
T ss_pred hHHHHHHHH
Confidence 554444443
No 14
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.41 E-value=2.5e-05 Score=77.94 Aligned_cols=83 Identities=13% Similarity=0.250 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
.+.+++...+.++|.|.+.|...+...|.++++ ++...+++++...++|..+++.+.+++. ++||++.|.+.+
T Consensus 99 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~ 171 (400)
T PRK11646 99 PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH------QRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGA 171 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence 345677777888899999999999998888642 3688999999999999999999999998 789999999988
Q ss_pred HHHHHHHHHH
Q 017117 132 IAMGISNMLF 141 (377)
Q Consensus 132 i~m~~~l~~f 141 (377)
+..++..++.
T Consensus 172 ~~~~~~~i~~ 181 (400)
T PRK11646 172 VLFVLAAAFN 181 (400)
T ss_pred HHHHHHHHHH
Confidence 7766655443
No 15
>PRK10489 enterobactin exporter EntS; Provisional
Probab=98.29 E-value=9.8e-05 Score=73.72 Aligned_cols=84 Identities=15% Similarity=0.120 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i 132 (377)
..+++...+.+++.|..-|...+...|.++++ ++.+...+++++.++|..+++.+.+++.+..||++.|.+.++
T Consensus 111 ~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~ 184 (417)
T PRK10489 111 LAIYLLGLWDGFFGSLGVTALLAATPALVGRE------NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAA 184 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCHH------HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44555566667777777788888888887642 256778889999999999999999999999999999999888
Q ss_pred HHHHHHHHHH
Q 017117 133 AMGISNMLFF 142 (377)
Q Consensus 133 ~m~~~l~~f~ 142 (377)
..+++.+..+
T Consensus 185 ~~~~~~~~~~ 194 (417)
T PRK10489 185 GTFITLLPLL 194 (417)
T ss_pred HHHHHHHHHH
Confidence 8777665543
No 16
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.27 E-value=5.3e-05 Score=75.07 Aligned_cols=83 Identities=18% Similarity=0.250 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...+++...+.++|.|..-|...+...|.++++ +|...+++++.+.++|.++++.+..++.+..+|++.|.+.+
T Consensus 103 ~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (406)
T PRK11551 103 FPSLLVARLLTGVGLGGALPNLIALTSEAVGPR------LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGG 176 (406)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence 345667778889999999999999999999642 36888999999999999999999989999999999999988
Q ss_pred HHHHHHHHH
Q 017117 132 IAMGISNML 140 (377)
Q Consensus 132 i~m~~~l~~ 140 (377)
+..++..++
T Consensus 177 ~~~~~~~~~ 185 (406)
T PRK11551 177 VGPLLLVPL 185 (406)
T ss_pred HHHHHHHHH
Confidence 766555443
No 17
>PRK10054 putative transporter; Provisional
Probab=98.26 E-value=9.7e-05 Score=73.60 Aligned_cols=79 Identities=14% Similarity=0.189 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q 017117 55 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 134 (377)
Q Consensus 55 ~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m 134 (377)
+++...++..+.+.+.|...+...|.++++ +|.+.++++|...|+|..+++.+.+++.+ .||+..|.+.++..
T Consensus 99 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~ 171 (395)
T PRK10054 99 VVLFFALINCAYSVFSTVLKAWFADNLSST------SKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICS 171 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHH
Confidence 444444556666777888888888888632 26789999999999999999999999885 79999999998888
Q ss_pred HHHHHH
Q 017117 135 GISNML 140 (377)
Q Consensus 135 ~~~l~~ 140 (377)
+++++.
T Consensus 172 ~i~~i~ 177 (395)
T PRK10054 172 AFPLVF 177 (395)
T ss_pred HHHHHH
Confidence 777543
No 18
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.24 E-value=0.00016 Score=73.28 Aligned_cols=85 Identities=20% Similarity=0.170 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++-.+.++|.|+.-|...+++.|.++++ +|...+.+++.+.++|..+++.+.+++.+++||++.|.+.+
T Consensus 90 ~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~ 163 (485)
T TIGR00711 90 LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE------KRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINV 163 (485)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhh
Confidence 456777888899999999999999999999732 36788999999999999999999999999999999999877
Q ss_pred HHHHHHHHHHH
Q 017117 132 IAMGISNMLFF 142 (377)
Q Consensus 132 i~m~~~l~~f~ 142 (377)
+..+++.+...
T Consensus 164 ~~~~~~~~~~~ 174 (485)
T TIGR00711 164 PIGIIVVVVAF 174 (485)
T ss_pred HHHHHHHHHHH
Confidence 66555554433
No 19
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.23 E-value=0.00021 Score=73.48 Aligned_cols=85 Identities=18% Similarity=0.092 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++-.+.++|.|++-|...+...+.|.+++ +|..++.++....++|+.+++.+.+++.++.||++.|.+..
T Consensus 94 ~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~ 168 (495)
T PRK14995 94 ASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINV 168 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHH
Confidence 4567778888999999999988888888875422 37889999999999999999999999999999999999877
Q ss_pred HHHHHHHHHH
Q 017117 132 IAMGISNMLF 141 (377)
Q Consensus 132 i~m~~~l~~f 141 (377)
...++.+++.
T Consensus 169 ~~~~~~~~l~ 178 (495)
T PRK14995 169 PIVLVVMGLT 178 (495)
T ss_pred HHHHHHHHHH
Confidence 6555554443
No 20
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=98.22 E-value=0.00013 Score=69.41 Aligned_cols=86 Identities=21% Similarity=0.349 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++..+.+++.|...|...++..|.++++ +|...+++++...++|..+++.+.+++.++.+|++.|.+.+
T Consensus 87 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (352)
T cd06174 87 LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK------ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILA 160 (352)
T ss_pred HHHHHHHHHHHHcccccccHhHHHHHHHhCCcc------chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456778888899999999999999999999863 26789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 017117 132 IAMGISNMLFFI 143 (377)
Q Consensus 132 i~m~~~l~~f~~ 143 (377)
+.++++.+....
T Consensus 161 ~~~~~~~~~~~~ 172 (352)
T cd06174 161 ILGLLLALLLLF 172 (352)
T ss_pred HHHHHHHHHHHH
Confidence 888877766544
No 21
>PRK03545 putative arabinose transporter; Provisional
Probab=98.20 E-value=0.00035 Score=69.06 Aligned_cols=83 Identities=14% Similarity=0.134 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++-.+.++|.|.+-|...++..|.++++ +|...++++..+.++|..+++.+..++.+++||++.|.+.+
T Consensus 97 ~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~ 170 (390)
T PRK03545 97 FTVLLISRIGIAFAHAIFWSITASLAIRVAPAG------KKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIG 170 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChh------hhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHH
Confidence 345666677888888888888899999999742 26788899999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 017117 132 IAMGISNML 140 (377)
Q Consensus 132 i~m~~~l~~ 140 (377)
+..++..+.
T Consensus 171 ~~~~l~~~~ 179 (390)
T PRK03545 171 GGALITLLL 179 (390)
T ss_pred HHHHHHHHH
Confidence 776655444
No 22
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.16 E-value=0.00028 Score=68.17 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHhccchhhHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLVVYIQMEHGWGSAFGAL 130 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~-~~~~yi~~~~g~~~gF~i~ 130 (377)
...++++..+.++|.|..-|...++..|.++++ +|...++++..+.++|..+++ ++...+.++.||++.|.+.
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (379)
T TIGR00881 83 LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS------ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVP 156 (379)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHhcCHh------hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence 456777888889999999999999999999753 256788889999999999998 5777788889999999988
Q ss_pred HHHHHHHHHHHH
Q 017117 131 AIAMGISNMLFF 142 (377)
Q Consensus 131 ~i~m~~~l~~f~ 142 (377)
++..++..++.+
T Consensus 157 ~~~~~~~~~~~~ 168 (379)
T TIGR00881 157 GIIAIIVSLICF 168 (379)
T ss_pred HHHHHHHHHHHh
Confidence 877665544443
No 23
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=98.06 E-value=0.00058 Score=67.42 Aligned_cols=83 Identities=11% Similarity=0.015 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
.+.++++..+.+++.|. -|...+...|+++++ +|.....++..+.++|.++++.+.+++.+..||++.|.+.+
T Consensus 107 ~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 179 (408)
T PRK09874 107 IWQFLILRALLGLLGGF-VPNANALIATQVPRN------KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITA 179 (408)
T ss_pred HHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 34566666677777554 466777778877532 25677888999999999999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 017117 132 IAMGISNMLF 141 (377)
Q Consensus 132 i~m~~~l~~f 141 (377)
+..+++.+..
T Consensus 180 ~~~~~~~~~~ 189 (408)
T PRK09874 180 SVLFLCFLVT 189 (408)
T ss_pred HHHHHHHHHH
Confidence 8777665543
No 24
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.03 E-value=0.00042 Score=69.07 Aligned_cols=78 Identities=21% Similarity=0.379 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++-.+.++|.|+.-|...++..|.++++ +|....+++..+.++|.++++.+.+++.+.+||++.|.+..
T Consensus 106 ~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~ 179 (426)
T PRK12307 106 VIMLTLSRFIVGMGMAGEYACASTYAVESWPKH------LKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL 179 (426)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHh------HhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 456777788899999999999999999998743 25677888999999999999999999999999999999865
Q ss_pred HHHH
Q 017117 132 IAMG 135 (377)
Q Consensus 132 i~m~ 135 (377)
+..+
T Consensus 180 ~~~~ 183 (426)
T PRK12307 180 LPVL 183 (426)
T ss_pred HHHH
Confidence 5433
No 25
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.02 E-value=0.0012 Score=65.54 Aligned_cols=83 Identities=11% Similarity=0.093 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i 132 (377)
..+++.-.+.+++.|..-|...+...|.+++++ +.+..++++...++|..+++.+.+++.++.||++.|.+.++
T Consensus 102 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~ 175 (406)
T PRK15402 102 EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAA 175 (406)
T ss_pred HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHH
Confidence 456666777788888888888888899987432 45667788888889999999999999999999999999888
Q ss_pred HHHHHHHHH
Q 017117 133 AMGISNMLF 141 (377)
Q Consensus 133 ~m~~~l~~f 141 (377)
..+++.+..
T Consensus 176 ~~~~~~~~~ 184 (406)
T PRK15402 176 LAALSFFGL 184 (406)
T ss_pred HHHHHHHHH
Confidence 777666543
No 26
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.02 E-value=0.0012 Score=64.36 Aligned_cols=86 Identities=21% Similarity=0.328 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++..+.++|.|..-+...++..|.++++ +|...+.+++...++|..+++.+.+++.++.||+..|.+.+
T Consensus 93 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~ 166 (385)
T TIGR00710 93 IETLLVLRFVQAFGASAGSVISQALVRDIYPGE------ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLS 166 (385)
T ss_pred HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 345677788899999999999999999998732 36788999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHh
Q 017117 132 IAMGISNMLFFI 143 (377)
Q Consensus 132 i~m~~~l~~f~~ 143 (377)
+..++..+....
T Consensus 167 ~~~~~~~~~~~~ 178 (385)
T TIGR00710 167 LAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHH
Confidence 877766655543
No 27
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=98.00 E-value=0.00076 Score=67.18 Aligned_cols=85 Identities=19% Similarity=0.298 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHhccchhhHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV---VYIQMEHGWGSAFG 128 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~---~yi~~~~g~~~gF~ 128 (377)
.+.++++..+.++|.|..-+...++.+|.+++++ |...+.+++++.++|.++++.+. ..+.+..||++.|.
T Consensus 127 ~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~ 200 (481)
T TIGR00879 127 VEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLG 200 (481)
T ss_pred hHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHH
Confidence 3567888899999999999999999999997432 67888999999999999999988 66667899999999
Q ss_pred HHHHHHHHHHHHHH
Q 017117 129 ALAIAMGISNMLFF 142 (377)
Q Consensus 129 i~~i~m~~~l~~f~ 142 (377)
+.++..++.++..+
T Consensus 201 ~~~~~~~~~~~~~~ 214 (481)
T TIGR00879 201 LQLIPAGLLFLGLF 214 (481)
T ss_pred HHHHHHHHHHHHHh
Confidence 97776666554443
No 28
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=97.99 E-value=0.00098 Score=69.21 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~ 130 (377)
+.+.+++-..++++|+....|.-.+++.+..++++ ..++-++.-...|+..++||.+.+.+-...|-.+.|.+.
T Consensus 102 ~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~in 175 (524)
T PF05977_consen 102 SPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLIN 175 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence 45677878889999999999999999999998644 567778889999999999999999998889999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 017117 131 AIAMGISNMLFFIGT 145 (377)
Q Consensus 131 ~i~m~~~l~~f~~g~ 145 (377)
++..+++++.+..-+
T Consensus 176 alsfl~~i~~l~~~~ 190 (524)
T PF05977_consen 176 ALSFLISILALLRWK 190 (524)
T ss_pred HHHHHHHHHHHHHcc
Confidence 999888776655433
No 29
>PRK10504 putative transporter; Provisional
Probab=97.99 E-value=0.001 Score=67.48 Aligned_cols=89 Identities=16% Similarity=0.089 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++..+.++|.|..-|...+.+.|.++++ ++...+.++....++|..+++.+.+++.++.||++.|.+..
T Consensus 98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~ 171 (471)
T PRK10504 98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPRE------QYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINI 171 (471)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHH
Confidence 345677788899999999999888889888631 35678899999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHhccc
Q 017117 132 IAMGISNMLFFIGTP 146 (377)
Q Consensus 132 i~m~~~l~~f~~g~~ 146 (377)
....++.+......+
T Consensus 172 ~~~~l~~~~~~~~~~ 186 (471)
T PRK10504 172 PVGIIGAIATLMLMP 186 (471)
T ss_pred HHHHHHHHHHHHhCC
Confidence 766666555444333
No 30
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.99 E-value=0.0015 Score=64.47 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...+++.-.+.++|.|..-|+..+...|.+++++ |...+.++..+.++|..+++.+.+++-++.||+..|.+++
T Consensus 112 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~ 185 (399)
T PRK05122 112 LLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIM 185 (399)
T ss_pred HHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4567777788999999999999999999986432 5677888889999999999999999999999999888776
Q ss_pred HHHHH
Q 017117 132 IAMGI 136 (377)
Q Consensus 132 i~m~~ 136 (377)
+..++
T Consensus 186 ~~~~~ 190 (399)
T PRK05122 186 LLALL 190 (399)
T ss_pred HHHHH
Confidence 65443
No 31
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=97.96 E-value=2e-06 Score=85.84 Aligned_cols=87 Identities=22% Similarity=0.379 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHH
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA 129 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g-~~~gF~i 129 (377)
+.+.+.+.=.++++|-..+-|-.+++++|.|+++ +|.+.|.||||+|++|+-+|..+..++.+.-+ |+++|.+
T Consensus 120 ~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~------~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~ 193 (493)
T KOG1330|consen 120 HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD------KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRG 193 (493)
T ss_pred HHHHHHHHHHHhccchhhhcccchhHhhhcCcch------hhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEe
Confidence 5666777778999999999999999999999864 37999999999999999999998999988777 9999999
Q ss_pred HHHHHHHHHH-HHHh
Q 017117 130 LAIAMGISNM-LFFI 143 (377)
Q Consensus 130 ~~i~m~~~l~-~f~~ 143 (377)
.++.+++..+ +|+.
T Consensus 194 ~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 194 SAVLGVIVGLLVFLF 208 (493)
T ss_pred ehHHHHHHHHHHHhh
Confidence 8888775544 4443
No 32
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=97.95 E-value=0.0015 Score=64.03 Aligned_cols=82 Identities=13% Similarity=0.254 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc--hhhHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--WGSAFGA 129 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g--~~~gF~i 129 (377)
...++++..+.++|.|+.-|...++..|.++++ +|...+.++..+.++|..+++.+.+.+.+..| |++.|.+
T Consensus 100 ~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~ 173 (405)
T TIGR00891 100 YITMFIARLVIGIGMGGEYGSSAAYVIESWPKH------LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFI 173 (405)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 445677888899999999999999999999753 26788999999999999999999999888776 9999988
Q ss_pred HHHHHHHHHH
Q 017117 130 LAIAMGISNM 139 (377)
Q Consensus 130 ~~i~m~~~l~ 139 (377)
.++..++.++
T Consensus 174 ~~~~~~~~~~ 183 (405)
T TIGR00891 174 SILPIIFALW 183 (405)
T ss_pred HHHHHHHHHH
Confidence 7665555443
No 33
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=97.89 E-value=0.003 Score=62.88 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
.+.+++.-.+.+++.|..-|...++..|.++++ +|.....+++.+.|+|..+++.+.+++.++.||++.|.+.+
T Consensus 108 ~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~------~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~ 181 (394)
T PRK10213 108 FSLLLIGRACLGLALGGFWAMSASLTMRLVPPR------TVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAA 181 (394)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 456777788899999999999999999999642 26788999999999999999999999999999999999887
Q ss_pred HHHHHHH
Q 017117 132 IAMGISN 138 (377)
Q Consensus 132 i~m~~~l 138 (377)
+..++.+
T Consensus 182 ~l~~~~~ 188 (394)
T PRK10213 182 VMGVLCI 188 (394)
T ss_pred HHHHHHH
Confidence 6555443
No 34
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.88 E-value=0.0015 Score=73.82 Aligned_cols=83 Identities=11% Similarity=0.099 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~ 130 (377)
+.+.+++...+.++|++.+.|...+++.|.+++++ +..+.+++.++.++|.++++.+.+++.+..||++.|.+.
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~ 180 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALL 180 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 35678889999999999999999999999998642 678999999999999999999999999999999999444
Q ss_pred HHHHHHHHH
Q 017117 131 AIAMGISNM 139 (377)
Q Consensus 131 ~i~m~~~l~ 139 (377)
++..+++++
T Consensus 181 ~~~~~~~~~ 189 (1140)
T PRK06814 181 MGIAVLGWL 189 (1140)
T ss_pred HHHHHHHHH
Confidence 444443333
No 35
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.87 E-value=0.0017 Score=63.14 Aligned_cols=85 Identities=12% Similarity=0.187 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc--------h
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG--------W 123 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g--------~ 123 (377)
...++....+.+++.+...|...+++.|.++++ +|..+.++...+.++|.++++.+..++.++.| |
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~w 156 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDE------ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLW 156 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHh------hhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence 344444444566777888899999999999642 26788899999999999999999999988888 9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 017117 124 GSAFGALAIAMGISNMLFF 142 (377)
Q Consensus 124 ~~gF~i~~i~m~~~l~~f~ 142 (377)
+..|.+.++..+++.++-+
T Consensus 157 r~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 157 GYIFFWTALLILPGLLVTL 175 (356)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998777665433
No 36
>PRK12382 putative transporter; Provisional
Probab=97.85 E-value=0.0032 Score=62.07 Aligned_cols=77 Identities=12% Similarity=0.189 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~ 130 (377)
....++++-.+.++|.+..-|...+.+.|.++++ +|...++++..+.++|..+++.+.+++.+.+||++.+.+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLTGALTWGLGLVGPK------HSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc------ccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 3556777778889999888888888888888642 2677888999999999999999999999999999877765
Q ss_pred HHH
Q 017117 131 AIA 133 (377)
Q Consensus 131 ~i~ 133 (377)
.+.
T Consensus 185 ~~~ 187 (392)
T PRK12382 185 MVL 187 (392)
T ss_pred HHH
Confidence 544
No 37
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.83 E-value=0.0014 Score=63.28 Aligned_cols=83 Identities=13% Similarity=0.068 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++..+.++|.|..-+...+...+.+++ +|.....++..+.++|++++..+...+.+..||++.|.+.+
T Consensus 91 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~ 163 (377)
T TIGR00890 91 LAALYLTYGLASAGVGIAYGIALNTAVKWFPD-------KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMG 163 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-------ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHH
Confidence 44566677788888888777777777777752 25678899999999999887777777778899999999988
Q ss_pred HHHHHHHHHH
Q 017117 132 IAMGISNMLF 141 (377)
Q Consensus 132 i~m~~~l~~f 141 (377)
+..++..+..
T Consensus 164 ~~~~~~~~~~ 173 (377)
T TIGR00890 164 IIFLLVIVLG 173 (377)
T ss_pred HHHHHHHHHH
Confidence 8766655443
No 38
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.82 E-value=0.0018 Score=64.02 Aligned_cols=77 Identities=16% Similarity=0.178 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++-.+.++|.|.. ++..+..+|.+++ + +|....+++..+.++|..+++.+.+++.++.||++.|.+.+
T Consensus 79 ~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~---~---~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~ 151 (368)
T TIGR00903 79 YEWLLACQLLAALGQPFL-LNAFAPAASQIRE---E---RRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIA 151 (368)
T ss_pred HHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 456777777888888865 4444555777763 2 37888999999999999999999999999999999998855
Q ss_pred HHHH
Q 017117 132 IAMG 135 (377)
Q Consensus 132 i~m~ 135 (377)
+.-+
T Consensus 152 ~l~~ 155 (368)
T TIGR00903 152 AVAA 155 (368)
T ss_pred HHHH
Confidence 5433
No 39
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.82 E-value=0.0025 Score=71.87 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 120 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~ 120 (377)
...++++..+.+++.|.+-|...+++.|.+++++ |...++++..+.++|.++++.+.+++.+.
T Consensus 103 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 103 FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667888888999999999999999999997532 67899999999999999999999998765
No 40
>PRK11663 regulatory protein UhpC; Provisional
Probab=97.82 E-value=0.0063 Score=61.27 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i 132 (377)
..+++...+.+++.|..-|...+...|.|+++ +|.....+++.+.++|+.+++.+.+++.+++||++.|.+.++
T Consensus 112 ~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i 185 (434)
T PRK11663 112 WAFALLWVLNAFFQGWGWPVCAKLLTAWYSRT------ERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGI 185 (434)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 34455555667788877788889999999742 367899999999999999999999999999999999998877
Q ss_pred HHHHH
Q 017117 133 AMGIS 137 (377)
Q Consensus 133 ~m~~~ 137 (377)
..++.
T Consensus 186 ~~~~~ 190 (434)
T PRK11663 186 IAIVV 190 (434)
T ss_pred HHHHH
Confidence 65544
No 41
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.82 E-value=0.0023 Score=65.01 Aligned_cols=78 Identities=17% Similarity=0.045 Sum_probs=58.9
Q ss_pred HHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Q 017117 60 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 139 (377)
Q Consensus 60 ~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~ 139 (377)
.+.++|.|..-+-..+...+-|+ + +|.....+++.+.++|..+++.+.+++.+.+||++.|.+.++..+++.+
T Consensus 116 ~l~G~~~~~~~~~~~~~~~~~~~---~----~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v 188 (455)
T TIGR00892 116 FITGLGLAFNFQPSLTMLGKYFY---R----RRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCV 188 (455)
T ss_pred HHHHhcchhhhhHHHHHHHHHHH---h----hHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 44577777543333456667663 1 2678889999999999999999999999999999999999988877665
Q ss_pred HHHhc
Q 017117 140 LFFIG 144 (377)
Q Consensus 140 ~f~~g 144 (377)
..+..
T Consensus 189 ~~~~~ 193 (455)
T TIGR00892 189 CGALM 193 (455)
T ss_pred HHHHh
Confidence 54443
No 42
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.81 E-value=0.0038 Score=63.22 Aligned_cols=83 Identities=12% Similarity=0.231 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhhHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALA 131 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~-g~~~gF~i~~ 131 (377)
..+++.-.+.++|.|..-|.......|-++++ +|..+..+++.+.++|..+++.+.+++.+.. ||++.|.+.+
T Consensus 132 ~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~ 205 (465)
T TIGR00894 132 ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPK------ERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFG 205 (465)
T ss_pred hHHHHHHHHHHHhcccchhhHHHHHHhcCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhh
Confidence 45677777889999999999999999988742 3678999999999999999999999999984 9999999988
Q ss_pred HHHHHHHHHH
Q 017117 132 IAMGISNMLF 141 (377)
Q Consensus 132 i~m~~~l~~f 141 (377)
+..++..+++
T Consensus 206 ~~~~~~~~~~ 215 (465)
T TIGR00894 206 IVGCAWSLLW 215 (465)
T ss_pred HHHHHHHHHH
Confidence 8665544433
No 43
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.81 E-value=0.0029 Score=62.44 Aligned_cols=82 Identities=17% Similarity=0.212 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i 132 (377)
..++++..+.++|.|..-+...+...|.++++ +|...+++++...++|..+++.+..++.+..||++.|.+.++
T Consensus 92 ~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~ 165 (392)
T PRK10473 92 SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR------RRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAA 165 (392)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHH
Confidence 44566667788888888888888999988742 267888999999999999999998888888999999999887
Q ss_pred HHHHHHHH
Q 017117 133 AMGISNML 140 (377)
Q Consensus 133 ~m~~~l~~ 140 (377)
..++..+.
T Consensus 166 ~~~i~~~~ 173 (392)
T PRK10473 166 MGILVLLL 173 (392)
T ss_pred HHHHHHHH
Confidence 76655544
No 44
>TIGR00898 2A0119 cation transport protein.
Probab=97.80 E-value=0.0032 Score=64.37 Aligned_cols=81 Identities=11% Similarity=0.151 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...+++...+.++|.|+.-|...++..|.+++++ |.....++.++.++|.++++.+..++.+ |++.|.+.+
T Consensus 180 ~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~ 250 (505)
T TIGR00898 180 YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVS 250 (505)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHH
Confidence 4567778889999999999999999999997532 4566777788889999988877766664 999999888
Q ss_pred HHHHHHHHHH
Q 017117 132 IAMGISNMLF 141 (377)
Q Consensus 132 i~m~~~l~~f 141 (377)
+..++..+..
T Consensus 251 i~~~~~~~~~ 260 (505)
T TIGR00898 251 LPTFLFFLLS 260 (505)
T ss_pred HHHHHHHHHH
Confidence 8776665544
No 45
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=97.79 E-value=0.0016 Score=63.26 Aligned_cols=82 Identities=22% Similarity=0.282 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hccchh
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWG 124 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~--------~~~g~~ 124 (377)
..++++..+.++|.|+.-|...++..|.+++++ |.....++..+.++|.++++.+...+. +.+||+
T Consensus 97 ~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~ 170 (394)
T TIGR00883 97 ILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWR 170 (394)
T ss_pred HHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchH
Confidence 356777788899999999999999999887432 567888899999999999988776654 367999
Q ss_pred hHHHHHHHHHHHHHHH
Q 017117 125 SAFGALAIAMGISNML 140 (377)
Q Consensus 125 ~gF~i~~i~m~~~l~~ 140 (377)
+.|.+.++..+++..+
T Consensus 171 ~~~~~~~~~~~~~~~~ 186 (394)
T TIGR00883 171 IPFLVSAVLVLIGLYL 186 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887766655443
No 46
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=97.72 E-value=0.0029 Score=62.51 Aligned_cols=79 Identities=8% Similarity=0.014 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
.+.+++...+.+.+.+..-|...++..+ ++ +++...+.+.....++|..+++.+.+++.+++||+..|.+.+
T Consensus 94 ~~~l~~~~~l~~~~~~~~~p~~~al~~~-~~-------~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~ 165 (382)
T TIGR00902 94 AWLLFIAIGLFALFFSAGMPIGDALANT-WQ-------KQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILT 165 (382)
T ss_pred HHHHHHHHHHHHHHHccchhHHHHHHHH-HH-------HHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 4556666666677777777776666432 21 124567899999999999999999999999999999999877
Q ss_pred HHHHHHH
Q 017117 132 IAMGISN 138 (377)
Q Consensus 132 i~m~~~l 138 (377)
+...+.+
T Consensus 166 ~~~~~~~ 172 (382)
T TIGR00902 166 AGLAFML 172 (382)
T ss_pred HHHHHHH
Confidence 6544333
No 47
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.71 E-value=0.0071 Score=60.07 Aligned_cols=82 Identities=11% Similarity=0.213 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhhHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALA 131 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~-g~~~gF~i~~ 131 (377)
..++++-.+.++|.|..-+.......|.|++ +|......+..+.++|..++..+.+++.++. ||+..|.+-+
T Consensus 98 ~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~ 170 (393)
T PRK09705 98 ALLLSSALLGGVGIGIIQAVMPSVIKRRFQQ-------RTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWA 170 (393)
T ss_pred HHHHHHHHHHHhHHHHHhhhhhHHHHHHccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3567788889999999999999998888852 1467888888999999999999999998886 8999887655
Q ss_pred HHHHHHHHHH
Q 017117 132 IAMGISNMLF 141 (377)
Q Consensus 132 i~m~~~l~~f 141 (377)
+..++.+..+
T Consensus 171 ~~~~~~~~~~ 180 (393)
T PRK09705 171 LPAVVALFAW 180 (393)
T ss_pred HHHHHHHHHH
Confidence 5544444333
No 48
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=97.71 E-value=0.017 Score=57.81 Aligned_cols=84 Identities=20% Similarity=0.247 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh------ccchhh
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGS 125 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~------~~g~~~ 125 (377)
...++++-.+.++|.|+.-|.......|-|+++ +|.....++..+.++|..+++.+.+++.+ ..||++
T Consensus 96 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~ 169 (412)
T TIGR02332 96 PESLYLLRILVGIAEAGFLPGILLYLTFWFPAY------FRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQW 169 (412)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhH
Confidence 345677778899999999888888888988732 26678889999999999999999888864 479999
Q ss_pred HHHHHHHHHHHHHHHH
Q 017117 126 AFGALAIAMGISNMLF 141 (377)
Q Consensus 126 gF~i~~i~m~~~l~~f 141 (377)
.|.+.++..++..++.
T Consensus 170 ~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 170 LFLLEGFPSVILGVMT 185 (412)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999877665544433
No 49
>PRK10091 MFS transport protein AraJ; Provisional
Probab=97.69 E-value=0.011 Score=58.38 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
.+.++++-.+.++|.|..-|.......|.++++ +|.+.+..+..+.++|..+++.+..++.++.||++.|.+.+
T Consensus 91 ~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~ 164 (382)
T PRK10091 91 YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG------KVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIA 164 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH------HhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHH
Confidence 456777788888988888887777777777642 24567888889999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 017117 132 IAMGISNML 140 (377)
Q Consensus 132 i~m~~~l~~ 140 (377)
+..++..+.
T Consensus 165 ~~~~~~~~~ 173 (382)
T PRK10091 165 VFNIAVLAS 173 (382)
T ss_pred HHHHHHHHH
Confidence 866655443
No 50
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.68 E-value=0.0047 Score=60.96 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++..+.++|.|...+....+..|.++++ ++....+++..+.++|.++++.+.+++.++.||++.|.+.+
T Consensus 96 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~ 169 (394)
T PRK11652 96 LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT------QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLL 169 (394)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 345666777788888887777777888877642 25667788889999999999999999999999999999987
Q ss_pred HHHHHHHH
Q 017117 132 IAMGISNM 139 (377)
Q Consensus 132 i~m~~~l~ 139 (377)
+..++..+
T Consensus 170 ~~~~~~~~ 177 (394)
T PRK11652 170 LLGAGVTF 177 (394)
T ss_pred HHHHHHHH
Confidence 76554433
No 51
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.67 E-value=0.00038 Score=68.82 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~ 133 (377)
.++++..+.++|.|..-|.......|.+++ +++.+.+.+++...++|..+++.+.+++.++.||+..|.+.++.
T Consensus 304 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~------~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 377 (399)
T PRK05122 304 MALIGAALTGFGFSLVFPALGVEAVKRVPP------QNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALA 377 (399)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 455667778888888777777777765542 13678999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhcccccccCCC
Q 017117 134 MGISNMLFFIGTPLYRHRLP 153 (377)
Q Consensus 134 m~~~l~~f~~g~~~y~~~~p 153 (377)
.+++++.....+++.++..|
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~ 397 (399)
T PRK05122 378 ALLGLALTWLLYRRAPRAVP 397 (399)
T ss_pred HHHHHHHHHHhcccccccCC
Confidence 88888776666665555444
No 52
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.67 E-value=0.0093 Score=57.90 Aligned_cols=84 Identities=13% Similarity=0.222 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q 017117 55 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 134 (377)
Q Consensus 55 ~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m 134 (377)
+++.-.+++.+.+..-|...++..|..++++ +.+.....+.+.+.++|..+++.+.+++.++.||++.|.+.++..
T Consensus 90 l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~ 165 (375)
T TIGR00899 90 LLVLGVLLSSFASTANPQLFALAREHADRTG----REAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAF 165 (375)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc----hhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHH
Confidence 4444344455555566666666666554221 112233677888899999999999999999999999999998877
Q ss_pred HHHHHHHH
Q 017117 135 GISNMLFF 142 (377)
Q Consensus 135 ~~~l~~f~ 142 (377)
++..+..+
T Consensus 166 ~~~~~~~~ 173 (375)
T TIGR00899 166 VLCGVLVW 173 (375)
T ss_pred HHHHHHHH
Confidence 66655443
No 53
>PRK15011 sugar efflux transporter B; Provisional
Probab=97.64 E-value=0.007 Score=60.00 Aligned_cols=69 Identities=13% Similarity=0.251 Sum_probs=49.2
Q ss_pred cccccchhhhhccCCCCChhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Q 017117 68 GIRPCVSSFGADQFDERSKDYKTHLDRFF-NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 141 (377)
Q Consensus 68 ~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F-~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f 141 (377)
..-|...+...|..++++ | ....+ +++..+.++|..+++.+.+++.++.||+..|.+.++..++..+..
T Consensus 121 ~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~ 190 (393)
T PRK15011 121 TANPQMFALAREHADKTG-R----EAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMV 190 (393)
T ss_pred hhHHHHHHHHHHHhhhcc-c----hHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 445666666666554221 1 12234 588889999999999999999999999999999887655554443
No 54
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.62 E-value=0.016 Score=58.64 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hccch
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGW 123 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~--------~~~g~ 123 (377)
...++++-.+.++|.|+.-|...++++|.++++. |.....++-.+..+|.++++.+..++. ++.||
T Consensus 120 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW 193 (479)
T PRK10077 120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193 (479)
T ss_pred HHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCh
Confidence 4566778888999999999999999999998532 567778888888999998876655443 46799
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 017117 124 GSAFGALAIAMGISNMLF 141 (377)
Q Consensus 124 ~~gF~i~~i~m~~~l~~f 141 (377)
++.|.+.++..++.++..
T Consensus 194 r~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 194 RYMFASEAIPALLFLMLL 211 (479)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999887776655443
No 55
>PRK11043 putative transporter; Provisional
Probab=97.60 E-value=0.015 Score=57.50 Aligned_cols=84 Identities=14% Similarity=0.224 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++..+.++|.|..-+...++..|.|++++ +.+.++......++|..+++.+.+++.+++||++.|.+.+
T Consensus 94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~ 167 (401)
T PRK11043 94 AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLF 167 (401)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 3456666777788888777877888889887432 4567788888899999999999999999999999999888
Q ss_pred HHHHHHHHHH
Q 017117 132 IAMGISNMLF 141 (377)
Q Consensus 132 i~m~~~l~~f 141 (377)
+..++..+..
T Consensus 168 ~~~~~~~~~~ 177 (401)
T PRK11043 168 AITLLLILPT 177 (401)
T ss_pred HHHHHHHHHH
Confidence 7776655543
No 56
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.56 E-value=0.001 Score=54.32 Aligned_cols=85 Identities=20% Similarity=0.239 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i 132 (377)
..+++...+.+++.|..-|...+...|.+++++ +....++++...++|..+++.+.+++.+..||+..|.+.++
T Consensus 52 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (141)
T TIGR00880 52 TVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAI 125 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHH
Confidence 456667788888888888999999999987542 67888999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHh
Q 017117 133 AMGISNMLFFI 143 (377)
Q Consensus 133 ~m~~~l~~f~~ 143 (377)
..+++.+....
T Consensus 126 ~~~~~~~~~~~ 136 (141)
T TIGR00880 126 LALAAFILLAF 136 (141)
T ss_pred HHHHHHHHHhh
Confidence 77766665543
No 57
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.56 E-value=0.0014 Score=64.11 Aligned_cols=83 Identities=20% Similarity=0.355 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i 132 (377)
..+++...+.+++.|...+...++..|.++++ +|...+++++...++|..+++.+.+++.+..||++.|.+.++
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 153 (377)
T PRK11102 80 DQLIYMRFLHGLAAAAASVVINALMRDMFPKE------EFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLAL 153 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 45667777888999999999999999988643 267889999999999999999999999999999999998877
Q ss_pred HHHHHHHHH
Q 017117 133 AMGISNMLF 141 (377)
Q Consensus 133 ~m~~~l~~f 141 (377)
..++..+..
T Consensus 154 ~~~~~~~~~ 162 (377)
T PRK11102 154 AAILAAALV 162 (377)
T ss_pred HHHHHHHHH
Confidence 766665443
No 58
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=97.54 E-value=0.0062 Score=60.08 Aligned_cols=80 Identities=8% Similarity=0.054 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
.+.+++...+++++.+...|-..+...|. ++ ++...+++..+..++|..+++.+.+++.+++||+..|.+.+
T Consensus 94 ~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-~~-------~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~ 165 (382)
T PRK11128 94 FWLLFVAIGLFNLFFSPLVPLTDALANTW-QK-------QIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILT 165 (382)
T ss_pred HHHHHHHHHHHHHHHcccccHHHHHHHHH-Hh-------hccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 45566666777888888888777776664 21 13455677788889999999999999999999999999888
Q ss_pred HHHHHHHH
Q 017117 132 IAMGISNM 139 (377)
Q Consensus 132 i~m~~~l~ 139 (377)
+..++..+
T Consensus 166 ~~~~~~~~ 173 (382)
T PRK11128 166 AGVASMLL 173 (382)
T ss_pred HHHHHHHH
Confidence 76555443
No 59
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.51 E-value=0.0015 Score=65.60 Aligned_cols=83 Identities=14% Similarity=0.070 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++-.+.++|.|..-+.......|.|++++ +.+..+++..+.++|..+++.+.+++.++.||++.|.+.+
T Consensus 104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~ 177 (413)
T PRK15403 104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIA 177 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4456777788888887665555667778887432 4677899999999999999999999999999999999988
Q ss_pred HHHHHHHHH
Q 017117 132 IAMGISNML 140 (377)
Q Consensus 132 i~m~~~l~~ 140 (377)
+..+++.+.
T Consensus 178 ~~~~i~~~~ 186 (413)
T PRK15403 178 VMGLIAFVG 186 (413)
T ss_pred HHHHHHHHH
Confidence 877766654
No 60
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.50 E-value=0.033 Score=56.39 Aligned_cols=82 Identities=11% Similarity=0.209 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHhccchhhHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGAL 130 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGs-l~a~~~~~yi~~~~g~~~gF~i~ 130 (377)
...+++...+.+++.|..-|.......|.++++ +|....++++.+.++|. +.+++....+....||+++|.+.
T Consensus 120 ~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~ 193 (452)
T PRK11273 120 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMP 193 (452)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHhCChH------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 445666677788888888888888888888642 26778899999999986 55555444444445999999998
Q ss_pred HHHHHHHHH
Q 017117 131 AIAMGISNM 139 (377)
Q Consensus 131 ~i~m~~~l~ 139 (377)
++..++..+
T Consensus 194 ~~~~~~~~~ 202 (452)
T PRK11273 194 AFAAILVAL 202 (452)
T ss_pred HHHHHHHHH
Confidence 876665433
No 61
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.49 E-value=0.0038 Score=63.87 Aligned_cols=81 Identities=10% Similarity=0.063 Sum_probs=68.3
Q ss_pred HHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Q 017117 57 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 136 (377)
Q Consensus 57 ~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~ 136 (377)
+.+.+++++.+......-++..|+.+ ++++ ......++.|.+.++|.+++..+.+++.+++||+..|.+.++.+++
T Consensus 125 ~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll 200 (468)
T TIGR00788 125 AFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLL 200 (468)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 46788999999999999999999998 3322 3456778999999999999999999999999999999999888887
Q ss_pred HHHHH
Q 017117 137 SNMLF 141 (377)
Q Consensus 137 ~l~~f 141 (377)
..+..
T Consensus 201 ~~~~~ 205 (468)
T TIGR00788 201 QLFVS 205 (468)
T ss_pred HHHHH
Confidence 75443
No 62
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.42 E-value=0.00081 Score=71.47 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc----------
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---------- 121 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~---------- 121 (377)
..+++++-.+.++|.|.+-|...+++.|-+++++ +..++.+++.+.++|..+++++.+++.+.+
T Consensus 172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~ 245 (633)
T TIGR00805 172 WLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTED 245 (633)
T ss_pred ehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCC
Confidence 4567889999999999999999999999887543 678899999999999999999998887543
Q ss_pred ------------chhhHHHHHHHHHHHHHHHHHh
Q 017117 122 ------------GWGSAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 122 ------------g~~~gF~i~~i~m~~~l~~f~~ 143 (377)
+|+.+|.+.++..++..+.++.
T Consensus 246 ~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 246 VILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999988877765554433
No 63
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.41 E-value=0.024 Score=56.24 Aligned_cols=85 Identities=14% Similarity=0.170 Sum_probs=65.7
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHH
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGA 129 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~-~g~~~gF~i 129 (377)
+.+.+++...+.++......|...++..|.+++++ |.++..+..++.++|.+++..+..++.+. .||+..|.+
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i 166 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL 166 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence 34445545455677788899999999999986432 56777888889999999999888888876 599999999
Q ss_pred HHHHHHHHHHHH
Q 017117 130 LAIAMGISNMLF 141 (377)
Q Consensus 130 ~~i~m~~~l~~f 141 (377)
.++.+++..+..
T Consensus 167 ~a~~~l~~~l~~ 178 (402)
T PRK11902 167 MAGLMLAGALTT 178 (402)
T ss_pred HHHHHHHHHHHH
Confidence 888776655543
No 64
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=97.38 E-value=0.053 Score=52.64 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhhHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GWGSAFGAL 130 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~--g~~~gF~i~ 130 (377)
..++++-.+.++|.|...+...+...|.+++ +|....+++..+.++|..+++.+.+++.++. +|++.|.+.
T Consensus 88 ~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~ 160 (355)
T TIGR00896 88 ALLFAGTALIGVGIAIINVLLPSLIKRDFPQ-------RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWW 160 (355)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 4566777788899998888888888877742 1567888999999999999999988887765 399999877
Q ss_pred HHHHHHHHH
Q 017117 131 AIAMGISNM 139 (377)
Q Consensus 131 ~i~m~~~l~ 139 (377)
++..+++..
T Consensus 161 ~~~~~~~~~ 169 (355)
T TIGR00896 161 ALPALLALL 169 (355)
T ss_pred HHHHHHHHH
Confidence 765554433
No 65
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.37 E-value=0.044 Score=54.45 Aligned_cols=76 Identities=13% Similarity=0.096 Sum_probs=61.6
Q ss_pred HHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Q 017117 57 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 136 (377)
Q Consensus 57 ~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~ 136 (377)
+...+.++|.|++-|...+++.|.++++ ++.+..++.....++|..+++.+.+++.+. .|...|.+.++..++
T Consensus 93 ~~r~l~G~~~a~~~pa~~a~i~~~~~~~------~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~ 165 (393)
T PRK11195 93 LAYGLVGIGAAAYSPAKYGILTELLPGE------KLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLL 165 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4455789999999999999999999853 267888999999999999999999999875 488888777766555
Q ss_pred HHH
Q 017117 137 SNM 139 (377)
Q Consensus 137 ~l~ 139 (377)
+.+
T Consensus 166 ~~~ 168 (393)
T PRK11195 166 AAL 168 (393)
T ss_pred HHH
Confidence 543
No 66
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.35 E-value=0.036 Score=54.51 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFG 128 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~ 128 (377)
...++++..+.++|.|.+.|...+...|.++++ +|.+.+++++.+.|+|..+++.+.+++.+...++..+.
T Consensus 94 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 164 (381)
T PRK03633 94 FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSR------NRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWV 164 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHH
Confidence 456777788889999988888777777776532 26788999999999999999999999887654444443
No 67
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=97.32 E-value=0.023 Score=56.66 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------hccchh
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-------MEHGWG 124 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~-------~~~g~~ 124 (377)
...+++...+..++.+.+.....++.+|..++ ++ +|.+..++-..+.++|++++..+.+.+. +..||+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~---~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~ 173 (437)
T TIGR00792 99 LVYAYITYILLGLFYSFVNIPYWSLVPAITLD--PR---ERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF 173 (437)
T ss_pred HHHHHHHHHHHHHHHHhhcccHhhCcccccCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence 34444445556777777777778888887654 32 2567788888888998877766554443 356899
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 017117 125 SAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 125 ~gF~i~~i~m~~~l~~f~~ 143 (377)
+.|.+.++...+..++...
T Consensus 174 ~~~~i~~~l~~~~~~~~~~ 192 (437)
T TIGR00792 174 MFALVLALIGVVSLIICFF 192 (437)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9988888776666554433
No 68
>PRK12382 putative transporter; Provisional
Probab=97.30 E-value=0.0017 Score=64.14 Aligned_cols=85 Identities=15% Similarity=0.082 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~ 133 (377)
.++++..+..+|.|..-|...+...|.++++ +|.+.+.+++...++|..+++.+.+++.|++||+..|.+.++.
T Consensus 304 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~ 377 (392)
T PRK12382 304 VALAGAALTGAGCSLIFPALGVEVVKRVPSQ------VRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAIS 377 (392)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 4455666777888877787777777776532 3688999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHhc
Q 017117 134 MGISNMLFFIG 144 (377)
Q Consensus 134 m~~~l~~f~~g 144 (377)
.++++++.+..
T Consensus 378 ~~~~~~~~~~~ 388 (392)
T PRK12382 378 AVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHhh
Confidence 88888776543
No 69
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.27 E-value=0.058 Score=54.10 Aligned_cols=108 Identities=10% Similarity=0.043 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCC
Q 017117 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (377)
Q Consensus 3 ~i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~ 82 (377)
++.++.++..+|.++...++. ..+...++++..+.++|.|...+...+...+.-+
T Consensus 70 ~~~~g~~l~~~g~~l~~~~~~-------------------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~ 124 (410)
T TIGR00885 70 GILLGLFLYALGAFLFWPAAE-------------------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGP 124 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------------------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCC
Confidence 466777777777655443321 0135678888999999999999999999888765
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------------------------hccchhhHHHHHHHHHHH
Q 017117 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------------------------MEHGWGSAFGALAIAMGI 136 (377)
Q Consensus 83 ~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~--------------------------~~~g~~~gF~i~~i~m~~ 136 (377)
+++ +.+..++.....++|+.+++.+.+++. +..+|++.|.+.++..++
T Consensus 125 ~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~ 198 (410)
T TIGR00885 125 EST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLA 198 (410)
T ss_pred HhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 345577888889999999988887763 235799999877775554
Q ss_pred HHHHH
Q 017117 137 SNMLF 141 (377)
Q Consensus 137 ~l~~f 141 (377)
..+++
T Consensus 199 ~~~~~ 203 (410)
T TIGR00885 199 VALLI 203 (410)
T ss_pred HHHHH
Confidence 44333
No 70
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.23 E-value=0.047 Score=56.18 Aligned_cols=85 Identities=13% Similarity=0.152 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhHHHH
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGA 129 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~-~~g~~~gF~i 129 (377)
+...++....+.+++.+...+...++..|.+++++ |.....+.-++.++|.++++.+..++.+ ..||+..|.+
T Consensus 106 ~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i 179 (491)
T PRK11010 106 QLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWL 179 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 35566666777888888999999999999987422 5677788889999999999999999988 5799999999
Q ss_pred HHHHHHHHHHHH
Q 017117 130 LAIAMGISNMLF 141 (377)
Q Consensus 130 ~~i~m~~~l~~f 141 (377)
.++.+++..+..
T Consensus 180 ~a~l~ll~~l~~ 191 (491)
T PRK11010 180 MAALLIPCIIAT 191 (491)
T ss_pred HHHHHHHHHHHH
Confidence 888777665543
No 71
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.15 E-value=0.0029 Score=62.44 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i 132 (377)
..+++...+.+++.|..-|...+...+..+++ ++.+.+.+++...++|..+++.+.+++.++.||+..|.+.++
T Consensus 312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~ 385 (408)
T PRK09874 312 LQLGILRFLLGAADGALLPAVQTLLVYNSSNQ------IAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAG 385 (408)
T ss_pred HHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcc------cceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHH
Confidence 34556666778888888888888776654432 367888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q 017117 133 AMGISNMLFFIGTP 146 (377)
Q Consensus 133 ~m~~~l~~f~~g~~ 146 (377)
..+++.+......+
T Consensus 386 ~~l~~~~~~~~~~~ 399 (408)
T PRK09874 386 VVLFNAVYSWNSLR 399 (408)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888776654333
No 72
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.02 E-value=0.0039 Score=60.05 Aligned_cols=79 Identities=16% Similarity=0.139 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q 017117 55 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 134 (377)
Q Consensus 55 ~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m 134 (377)
++....+..++.|..-+...++..|.+++++ +.+.+.+++...++|..+++.+.+++.++.||++.|.+.++..
T Consensus 298 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~ 371 (377)
T TIGR00890 298 FLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFA 371 (377)
T ss_pred HHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH
Confidence 3444556677777777777888888887432 5788899999999999999999999999999999999999888
Q ss_pred HHHHH
Q 017117 135 GISNM 139 (377)
Q Consensus 135 ~~~l~ 139 (377)
+++++
T Consensus 372 ~~~~~ 376 (377)
T TIGR00890 372 LTSLA 376 (377)
T ss_pred HHhcc
Confidence 77654
No 73
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.01 E-value=0.0062 Score=57.85 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...+++...+.+++.++..|...+...|.++++ +|...++.+.+..++|..+++.+.+++.|+.||+..|.+.+
T Consensus 265 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~ 338 (352)
T cd06174 265 LALLLVALLLLGFGLGFAFPALLTLASELAPPE------ARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILA 338 (352)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHH
Confidence 345677888999999999999999999998752 36899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 017117 132 IAMGISNMLFF 142 (377)
Q Consensus 132 i~m~~~l~~f~ 142 (377)
+..+++.+.+.
T Consensus 339 ~~~~i~~i~~~ 349 (352)
T cd06174 339 ALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHhe
Confidence 99988887664
No 74
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=96.97 E-value=0.27 Score=49.14 Aligned_cols=90 Identities=14% Similarity=0.280 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~ 130 (377)
+...+.++=.+.++..|.+=+-..+..+|.-++++ |.+.-..-+.+..++-.++.-+..++.|.+||+..|.+-
T Consensus 100 ~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~i 173 (394)
T COG2814 100 SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAI 173 (394)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHH
Confidence 35678888889999999999999999999998643 678899999999999999988999999999999999988
Q ss_pred HHHHHHHHHHHHhccc
Q 017117 131 AIAMGISNMLFFIGTP 146 (377)
Q Consensus 131 ~i~m~~~l~~f~~g~~ 146 (377)
++.-.++++..+..-+
T Consensus 174 a~l~ll~~~~~~~~lP 189 (394)
T COG2814 174 AVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 7766666665554444
No 75
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=96.96 E-value=0.005 Score=61.92 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhc------cchh
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQME------HGWG 124 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY-~~iNiGsl~a~~~~~yi~~~------~g~~ 124 (377)
...+++...+.+++.|..-|+...++.|.++++ .+.+.+.+++ +..++|+.+++.+.+++.|+ +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~------~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVH------IRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 345667777888888888899999999998843 3678899997 56789999999999999987 4699
Q ss_pred hHHHHHHHHHHHHHHHHHh
Q 017117 125 SAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 125 ~gF~i~~i~m~~~l~~f~~ 143 (377)
..|.++++...++.+.+..
T Consensus 382 ~~f~~~~~~~~i~~~l~~~ 400 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMI 400 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999887776666555443
No 76
>PRK03893 putative sialic acid transporter; Provisional
Probab=96.95 E-value=0.0049 Score=62.75 Aligned_cols=78 Identities=17% Similarity=0.297 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++..+.+++.|+..+...++..|.++++ +|...+.+++.+.++|.++++.+.+++.+++||++.|.+.+
T Consensus 108 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~ 181 (496)
T PRK03893 108 YWTLFIARLVIGMGMAGEYGSSATYVIESWPKH------LRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGI 181 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 456777788899999999999999999999742 35778889999999999999999999999999999998865
Q ss_pred HHHH
Q 017117 132 IAMG 135 (377)
Q Consensus 132 i~m~ 135 (377)
+..+
T Consensus 182 ~~~~ 185 (496)
T PRK03893 182 LPII 185 (496)
T ss_pred HHHH
Confidence 5443
No 77
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=96.93 E-value=0.31 Score=48.35 Aligned_cols=71 Identities=11% Similarity=0.119 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHhccchhhHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGA 129 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGs-l~a~~~~~yi~~~~g~~~gF~i 129 (377)
..+++.-.+.++|.+..-+...+...+.++++ +|.....++..+.++|. .+++.+.+++.++.||...+..
T Consensus 106 ~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 106 PLILLFYGIRGLGYPLFAYSFLVWVVYNTKQD------NLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred HHHHHHHHHHHcchHHHHhHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 34445555567777766666666677776532 36788889999999996 6788888898888886544443
No 78
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=96.89 E-value=0.0096 Score=59.98 Aligned_cols=84 Identities=13% Similarity=0.202 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHhccchhhHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVY-IQMEHGWGSAFGAL 130 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~y-i~~~~g~~~gF~i~ 130 (377)
...+++...+.+++.|..-|.......|.+++++ |...+++++.+.++|..+++.+.++ +.++.||+.+|.+.
T Consensus 118 ~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~ 191 (438)
T TIGR00712 118 IAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFP 191 (438)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3455666777888888888888888899887432 6789999999999999988777665 55568999999998
Q ss_pred HHHHHHHHHHH
Q 017117 131 AIAMGISNMLF 141 (377)
Q Consensus 131 ~i~m~~~l~~f 141 (377)
++..++..++.
T Consensus 192 ~~~~~i~~~~~ 202 (438)
T TIGR00712 192 AICAIIVALFA 202 (438)
T ss_pred HHHHHHHHHHH
Confidence 88776654433
No 79
>PRK03699 putative transporter; Provisional
Probab=96.81 E-value=0.016 Score=57.44 Aligned_cols=84 Identities=6% Similarity=0.110 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHGWGSAFGAL 130 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~-~~~g~~~gF~i~ 130 (377)
...+++...+.+++.|..-++..+...|.++++ +|.......+...++|+.+++.+.+++- ++.||++.|.+.
T Consensus 95 ~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~ 168 (394)
T PRK03699 95 LALFSIAMFVLGVVSGITMSIGTFLITHVYEGK------QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACI 168 (394)
T ss_pred HHHHHHHHHHHHHhhHhhccchhHHhhhhcccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 445677778888899988899999999999642 1456667778888999999988888764 567999999988
Q ss_pred HHHHHHHHHHH
Q 017117 131 AIAMGISNMLF 141 (377)
Q Consensus 131 ~i~m~~~l~~f 141 (377)
++..++..+..
T Consensus 169 ~~~~~~~~~~~ 179 (394)
T PRK03699 169 GLVYVAIFILT 179 (394)
T ss_pred HHHHHHHHHHH
Confidence 87666554443
No 80
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.17 Score=51.95 Aligned_cols=84 Identities=20% Similarity=0.352 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHH
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAI 132 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~-~g~~~gF~i~~i 132 (377)
.+.+.-.+.+++.|..-|++..+.+.=.+.++ |..+.+..|.+..+|..+++-+.+++-+. .||...|-+.++
T Consensus 130 ~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~ 203 (466)
T KOG2532|consen 130 LLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGI 203 (466)
T ss_pred hhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHH
Confidence 45666777888999999999988888777432 68999999999999999999999999988 999999998887
Q ss_pred HHHHHHHHHHh
Q 017117 133 AMGISNMLFFI 143 (377)
Q Consensus 133 ~m~~~l~~f~~ 143 (377)
.-++-.+++..
T Consensus 204 ~g~i~~~~w~~ 214 (466)
T KOG2532|consen 204 VGLIWFILWFL 214 (466)
T ss_pred HHHHHHHHHHH
Confidence 65555555443
No 81
>PRK10489 enterobactin exporter EntS; Provisional
Probab=96.75 E-value=0.0085 Score=59.72 Aligned_cols=84 Identities=13% Similarity=0.059 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~ 133 (377)
...+++.+.++|.|...+...++..|+.+++ .|.+.+.+++...++|..+++.+.+++.|.+|+...|.+.+++
T Consensus 314 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~ 387 (417)
T PRK10489 314 LAVLCLALFGYLSAISSLLQYTLLQTQTPDE------MLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFG 387 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------HHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHH
Confidence 3455566677777777677777777777632 3678899999999999999999999999999998888877766
Q ss_pred HHHHHHHHHh
Q 017117 134 MGISNMLFFI 143 (377)
Q Consensus 134 m~~~l~~f~~ 143 (377)
..+..++...
T Consensus 388 ~~~~~~~~~~ 397 (417)
T PRK10489 388 LLIIGVLLLL 397 (417)
T ss_pred HHHHHHHHHH
Confidence 5554444433
No 82
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.0057 Score=60.60 Aligned_cols=108 Identities=18% Similarity=0.193 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~ 130 (377)
..++++++=.+=++|......+-.++.+|-|.++.. |.+...+---++.+|.++|+-..+.+-|-.|+.+-|++.
T Consensus 158 sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL 232 (464)
T KOG3764|consen 158 SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVL 232 (464)
T ss_pred hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHH
Confidence 456899999999999999999999999999997654 577778888899999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhcccccccC--CCCCCchhHHHH
Q 017117 131 AIAMGISNML-FFIGTPLYRHR--LPGGSPLTRVAQ 163 (377)
Q Consensus 131 ~i~m~~~l~~-f~~g~~~y~~~--~p~gs~l~~~~~ 163 (377)
++.+++..++ |+.-.++-.+. .+++.|+.++.+
T Consensus 233 ~~v~Lld~~L~l~vi~p~~~~~~~~~~~~~~~~Ll~ 268 (464)
T KOG3764|consen 233 AIVLLLDGALQLLVIEPTEMDPDSTEQGTPMWSLLM 268 (464)
T ss_pred HHHHHHHHHHHHheeCccccCccccccCccHHHHHh
Confidence 9998876654 55555433222 466777777553
No 83
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=96.72 E-value=0.012 Score=59.15 Aligned_cols=79 Identities=20% Similarity=0.328 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hccchh
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWG 124 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~--------~~~g~~ 124 (377)
..+.+.-.+.++|.|+.-|...++++|.+++++ |..+.++.+.+.++|.+++..+...+. +.+||+
T Consensus 125 ~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr 198 (432)
T PRK10406 125 ALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWR 198 (432)
T ss_pred HHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchH
Confidence 456677778999999999999999999987532 456788889999999998887766654 268999
Q ss_pred hHHHHHHHHHHHH
Q 017117 125 SAFGALAIAMGIS 137 (377)
Q Consensus 125 ~gF~i~~i~m~~~ 137 (377)
+.|.+.++..++.
T Consensus 199 ~~F~i~~~~~ll~ 211 (432)
T PRK10406 199 IPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHH
Confidence 9999877755443
No 84
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=96.66 E-value=0.024 Score=59.53 Aligned_cols=102 Identities=22% Similarity=0.185 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCCC
Q 017117 4 FFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 83 (377)
Q Consensus 4 i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~ 83 (377)
+-+-++.+.+|..++-..++ ..+ .+-.+.|+...+..-+ +..++|++.+.|+||..
T Consensus 34 g~~~s~~~il~~e~~e~~a~-~g~----------------------~~nlv~ylt~~~~~~~-~~aa~~v~~f~G~~~~~ 89 (571)
T KOG1237|consen 34 GGWLSAPFILGNEVLERLAF-FGL----------------------VSNLVTYLTLELHASG-GGAANNVNAFGGTQFLL 89 (571)
T ss_pred chhHhHHHHHHHHHHHHHhH-hcc----------------------hhHHHHHHHHHhccch-HHHHHHHHHHhhHHHHH
Confidence 44557788889988888877 222 1235678888888888 99999999999999986
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHh
Q 017117 84 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 84 ~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~ 143 (377)
. -....+.-.|..+|+.||+++++..+. .|+++...|+.++..+-+
T Consensus 90 ~--l~g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~~a~~~~l~p~~~ 135 (571)
T KOG1237|consen 90 P--LLGAFLADSFLGRYFTINIGSLISLLG------------LFGLTLSAMIPALLPFMC 135 (571)
T ss_pred H--HHHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHHHHHhhhcCCccc
Confidence 3 223457889999999999999988654 888888888888776655
No 85
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=96.59 E-value=0.027 Score=54.48 Aligned_cols=76 Identities=16% Similarity=0.073 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----------cc
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EH 121 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~----------~~ 121 (377)
...++++-.+.++|.|.+- ...+..+|.++++ +|....+++....|+|..+++.+.+.+.+ +.
T Consensus 91 ~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~ 163 (366)
T TIGR00886 91 YSVLLLLRLFIGIAGGSFA-SCMPWISFFFPKK------IQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHL 163 (366)
T ss_pred HHHHHHHHHHHHHhchhhH-hHHHHHHHhcCHh------hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 3456667777788877664 4567888888643 25677888888888888888777766543 34
Q ss_pred chhhHH-HHHHHHH
Q 017117 122 GWGSAF-GALAIAM 134 (377)
Q Consensus 122 g~~~gF-~i~~i~m 134 (377)
+|++.| .+.++..
T Consensus 164 ~w~~~~~~~~~~~~ 177 (366)
T TIGR00886 164 AWGWAFVIVPAGIL 177 (366)
T ss_pred cccchhHHHHHHHH
Confidence 899999 5434433
No 86
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=96.46 E-value=0.046 Score=56.13 Aligned_cols=93 Identities=12% Similarity=0.133 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--Hhc---------
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--QME--------- 120 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi--~~~--------- 120 (377)
...+.+++.+.-+......+...++++|..++++.+ .+.++.|+.+.+|+|+.++..+.++. .+.
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~ 189 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC 189 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence 356677777778888888888899999999876532 46899999999999999998877765 221
Q ss_pred ----cchhhHHHHHHHHHHHHHHHHHhccccc
Q 017117 121 ----HGWGSAFGALAIAMGISNMLFFIGTPLY 148 (377)
Q Consensus 121 ----~g~~~gF~i~~i~m~~~l~~f~~g~~~y 148 (377)
.+++..|.+.++.++++.++-+...|.+
T Consensus 190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~ 221 (477)
T TIGR01301 190 GVSCANLKSCFLIDIILLAILTYIALSAVKEN 221 (477)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHeeeeecc
Confidence 1678999999999998888776665554
No 87
>TIGR00893 2A0114 d-galactonate transporter.
Probab=96.37 E-value=0.028 Score=54.19 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=63.9
Q ss_pred HHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHHHH
Q 017117 58 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGI 136 (377)
Q Consensus 58 ~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g-~~~gF~i~~i~m~~ 136 (377)
.+.++..+..+.-|...++..|.+++++ |...+.++....++|+.+++.+.+++.|..| |...|.+.++..++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~ 390 (399)
T TIGR00893 317 ALVALGFFGLGAGAIGWALISDNAPGNI------AGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALI 390 (399)
T ss_pred HHHHHHHhchhhhhHHHHHHHhhcChhH------HHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHH
Confidence 3344444444478899999999987432 6789999999999999999999999999999 99999999888887
Q ss_pred HHHHHH
Q 017117 137 SNMLFF 142 (377)
Q Consensus 137 ~l~~f~ 142 (377)
+.+.++
T Consensus 391 ~~~~~~ 396 (399)
T TIGR00893 391 GALSYL 396 (399)
T ss_pred HHHHHH
Confidence 777654
No 88
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=96.36 E-value=0.042 Score=54.58 Aligned_cols=68 Identities=9% Similarity=-0.014 Sum_probs=55.3
Q ss_pred ccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Q 017117 69 IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 142 (377)
Q Consensus 69 ~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~ 142 (377)
.-|+...+..|.++++ .|.......++..|+|+++++.+.+++.++.||.+.|.+.++..+++.++.+
T Consensus 400 ~~~~~~~~~~~~~p~~------~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~ 467 (481)
T TIGR00879 400 WGPVPWVIVSEIFPLS------LRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVY 467 (481)
T ss_pred ccCeehhhhhccCChH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHh
Confidence 4477777888888743 2577888899999999999999999999999999999988877766665543
No 89
>PRK03633 putative MFS family transporter protein; Provisional
Probab=96.33 E-value=0.03 Score=55.07 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=59.3
Q ss_pred HHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Q 017117 58 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGIS 137 (377)
Q Consensus 58 ~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~ 137 (377)
.+.+..++.+..-|...+...|+.++++ +.+....+..+.++|..+++.+.+++.|++||.+.|.+.+....++
T Consensus 291 ~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~ 364 (381)
T PRK03633 291 ALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIY 364 (381)
T ss_pred HHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555666677888888887775422 3456667778889999999999999999999999999987777655
Q ss_pred HHHHH
Q 017117 138 NMLFF 142 (377)
Q Consensus 138 l~~f~ 142 (377)
.+..+
T Consensus 365 ~~~~~ 369 (381)
T PRK03633 365 LLMLL 369 (381)
T ss_pred HHHHH
Confidence 44433
No 90
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=96.27 E-value=0.04 Score=53.42 Aligned_cols=82 Identities=7% Similarity=0.026 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q 017117 55 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 134 (377)
Q Consensus 55 ~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m 134 (377)
++....+.+++.|..-|...+...|..++ ++.+.++.+++..++|..+++.+.+++.+..||+..|.+.++..
T Consensus 291 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~ 363 (375)
T TIGR00899 291 LLMLQLLNAIFIGILAGIGMLYFQDLMPG-------RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVML 363 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34444455666676666666666676542 13488999999999999999999999999999999999999988
Q ss_pred HHHHHHHHh
Q 017117 135 GISNMLFFI 143 (377)
Q Consensus 135 ~~~l~~f~~ 143 (377)
+++.+..+.
T Consensus 364 ~~~~~~~~~ 372 (375)
T TIGR00899 364 IVALFCLLL 372 (375)
T ss_pred HHHHHHHhe
Confidence 888776643
No 91
>PF13347 MFS_2: MFS/sugar transport protein
Probab=96.25 E-value=0.16 Score=51.00 Aligned_cols=91 Identities=11% Similarity=0.104 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----Hhc---cchh
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI----QME---HGWG 124 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi----~~~---~g~~ 124 (377)
...+++...+..++.-.+.-+-.+++.|.-++.|+ |.+..++=-+..++|.++...+.+.+ ++. .||.
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~ 177 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYR 177 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHH
Confidence 34446666667888888888888999999876553 45555665566667775444444443 332 2688
Q ss_pred hHHHHHHHHHHHHHHHHHhcccc
Q 017117 125 SAFGALAIAMGISNMLFFIGTPL 147 (377)
Q Consensus 125 ~gF~i~~i~m~~~l~~f~~g~~~ 147 (377)
+.+.+.++...+..++.....|.
T Consensus 178 ~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 178 WMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHhhhhhheeee
Confidence 88888888777777776666554
No 92
>PRK09528 lacY galactoside permease; Reviewed
Probab=96.23 E-value=0.18 Score=50.21 Aligned_cols=50 Identities=10% Similarity=-0.116 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHh
Q 017117 93 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 93 ~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~ 143 (377)
...+.......++|..+++.+.+++.+ .+|+..|.+.++..++.++.++.
T Consensus 140 g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~ 189 (420)
T PRK09528 140 GFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFF 189 (420)
T ss_pred cccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhc
Confidence 345677788889999999999999976 58999999888777666655543
No 93
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=96.21 E-value=0.012 Score=59.72 Aligned_cols=86 Identities=9% Similarity=0.064 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhhHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALA 131 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~-g~~~gF~i~~ 131 (377)
..+++...+.+++.|..-++..++..|.++++ ++...+.++....++|..+++.+.+++.|.. +|...|.+++
T Consensus 334 ~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~ 407 (455)
T TIGR00892 334 TGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQ------RFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASG 407 (455)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhhHH------HHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhh
Confidence 44566677788899999999999999988642 2578889999999999999999999999887 5999999999
Q ss_pred HHHHHHHHHHHhc
Q 017117 132 IAMGISNMLFFIG 144 (377)
Q Consensus 132 i~m~~~l~~f~~g 144 (377)
+.++++.+....+
T Consensus 408 ~~~li~~~~~~~~ 420 (455)
T TIGR00892 408 SIVVSAGLFLAIG 420 (455)
T ss_pred HHHHHHHHHHHHH
Confidence 9888776654443
No 94
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=96.17 E-value=0.031 Score=57.23 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hccchhh
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGS 125 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~--------~~~g~~~ 125 (377)
.+.+.-.+.++|.|+.-|+..++..|.++++. |.....++..+.++|..++..+...+. .++||++
T Consensus 120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~ 193 (490)
T PRK10642 120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRI 193 (490)
T ss_pred HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHH
Confidence 46677778899999999999999999997532 445667777788888887776554443 2689999
Q ss_pred HHHHHHHHHH
Q 017117 126 AFGALAIAMG 135 (377)
Q Consensus 126 gF~i~~i~m~ 135 (377)
.|.+.++..+
T Consensus 194 ~f~i~~~~~l 203 (490)
T PRK10642 194 PFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHH
Confidence 9999765433
No 95
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=96.08 E-value=0.035 Score=56.85 Aligned_cols=121 Identities=12% Similarity=0.211 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCCC
Q 017117 4 FFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 83 (377)
Q Consensus 4 i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~ 83 (377)
+.+|.+++.+|.+.+.+.... . .. ....+.+.+.+...++.+|....-|...++..++-++
T Consensus 352 ~~~G~~l~~~~~~~~~~~~~~-~-~~-----------------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~ 412 (475)
T TIGR00924 352 FTLGMLFCGASFLTFAASIWF-A-DA-----------------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ 412 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-c-CC-----------------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence 367778888887777664321 0 00 0123456788899999999999999999999987764
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhcccccc
Q 017117 84 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYR 149 (377)
Q Consensus 84 ~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~g~~~y~ 149 (377)
+ .|..++..++.+..+|..++..+.....+..||..-|+..++.+++..++++..+|+.+
T Consensus 413 ~------~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (475)
T TIGR00924 413 R------LMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVPWLN 472 (475)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 37899999999999999999888888877788999999999999888888877666543
No 96
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=96.03 E-value=0.069 Score=52.98 Aligned_cols=78 Identities=13% Similarity=0.061 Sum_probs=62.9
Q ss_pred HHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHH
Q 017117 61 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAMGISNM 139 (377)
Q Consensus 61 lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g-~~~gF~i~~i~m~~~l~ 139 (377)
+..+|.|+.-|+......|++++++ .+.+.++..+...++++.+++.+.+++.|+.| |..+|.+.++.++++.+
T Consensus 301 l~g~g~g~~~~~~~~~~~~~~~~~~-----~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK09705 301 VCGLGLGGAFPLCLLLALDHSVQPA-----IAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMI 375 (393)
T ss_pred HHHHhccchHHHHHHHHHhhcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 4567777877877777777775322 35788999999999999999999999999886 89999999888887777
Q ss_pred HHHh
Q 017117 140 LFFI 143 (377)
Q Consensus 140 ~f~~ 143 (377)
..+.
T Consensus 376 ~~~~ 379 (393)
T PRK09705 376 ITLR 379 (393)
T ss_pred HHHH
Confidence 6544
No 97
>PRK10133 L-fucose transporter; Provisional
Probab=96.02 E-value=0.11 Score=52.68 Aligned_cols=85 Identities=15% Similarity=0.071 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCC
Q 017117 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (377)
Q Consensus 3 ~i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~ 82 (377)
++.++..++.+|.++...++.. .+...++++..+.++|.|...+...+++.|..+
T Consensus 93 ~l~~g~~~~~~~~~l~~~~~~a-------------------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~ 147 (438)
T PRK10133 93 GIITGLFLYALGAALFWPAAEI-------------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGP 147 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-------------------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC
Confidence 4667777777777665433221 135678889999999999999999999997543
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017117 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 118 (377)
Q Consensus 83 ~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~ 118 (377)
+ +. +....+.+.....+|..+++.+.+.+.
T Consensus 148 ~-~~-----~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 148 E-SS-----GHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred h-hh-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 21 233466677777788888877766543
No 98
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.02 E-value=1.9 Score=43.13 Aligned_cols=129 Identities=14% Similarity=0.100 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCCC
Q 017117 4 FFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 83 (377)
Q Consensus 4 i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~ 83 (377)
|+.|..+.+.|..+....... +... . .+. ..+.........++..++.+|.+.-...-.++..|.=+|
T Consensus 53 I~~G~~~~~~g~~~ap~a~~~--l~~~----~-----~~~-~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e 120 (403)
T PF03209_consen 53 IWGGTLLQAGGLAIAPFALLL--LAES----G-----QQS-SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPE 120 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--Hccc----c-----ccc-ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCH
Confidence 677888888887776665542 1100 0 000 111122233344444455555555666666777777664
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc----hhhHHHHHHHHHHHHHHHHHhccccccc
Q 017117 84 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG----WGSAFGALAIAMGISNMLFFIGTPLYRH 150 (377)
Q Consensus 84 ~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g----~~~gF~i~~i~m~~~l~~f~~g~~~y~~ 150 (377)
++ |.+.-++-|...=+|-.++.++.+.+-+.+. ...--.++.+.+.+.++-.+--.+++.+
T Consensus 121 ~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~ 185 (403)
T PF03209_consen 121 ER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALWGQEPRRSR 185 (403)
T ss_pred hh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcc
Confidence 32 5666677777777888888888887776655 3344445555555555555444444443
No 99
>PRK09528 lacY galactoside permease; Reviewed
Probab=95.97 E-value=0.036 Score=55.34 Aligned_cols=83 Identities=14% Similarity=0.137 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~-fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i 132 (377)
.++....+.+++.+..-+.....+.+.++++. +...+.. +-+..++|+.+++.+.+++.|..||+..|.+.++
T Consensus 317 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~ 390 (420)
T PRK09528 317 EVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGG 390 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHH
Confidence 34455556677777777777777788876432 3344444 5567889999999999999999999999999888
Q ss_pred HHHHHHHHHH
Q 017117 133 AMGISNMLFF 142 (377)
Q Consensus 133 ~m~~~l~~f~ 142 (377)
..+++.++.+
T Consensus 391 ~~~i~~~~~~ 400 (420)
T PRK09528 391 IVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHH
Confidence 7766655444
No 100
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=95.95 E-value=0.086 Score=54.13 Aligned_cols=82 Identities=12% Similarity=0.155 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh------------
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------------ 119 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~------------ 119 (377)
...++++..+.++|.|+.-|....+..|.++++ .|....+++++..++|.+++..+...+..
T Consensus 115 ~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~------~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 188 (502)
T TIGR00887 115 MATLCFWRFWLGVGIGGDYPLSAIITSEFATKK------WRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE 188 (502)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 467888999999999999999999999999853 26788889999999999888777655421
Q ss_pred -----------ccchhhHHHHHHHHHHHHHH
Q 017117 120 -----------EHGWGSAFGALAIAMGISNM 139 (377)
Q Consensus 120 -----------~~g~~~gF~i~~i~m~~~l~ 139 (377)
+.+|++.|.+.++..++..+
T Consensus 189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 189 ASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred ccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 24799999887776655443
No 101
>PRK03545 putative arabinose transporter; Provisional
Probab=95.81 E-value=0.14 Score=50.51 Aligned_cols=86 Identities=12% Similarity=-0.079 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i 132 (377)
..+++...+.++|.+++-+...+.+.+..++ .+.++..++....++|..+++.+.+++.|+.|+...|.+.++
T Consensus 295 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~ 367 (390)
T PRK03545 295 WHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-------ATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAA 367 (390)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHhCCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHH
Confidence 3455556666777777767666666665431 256788888888999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 017117 133 AMGISNMLFFIGT 145 (377)
Q Consensus 133 ~m~~~l~~f~~g~ 145 (377)
..+++++.+....
T Consensus 368 ~~~~~~~~~~~~~ 380 (390)
T PRK03545 368 LALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHc
Confidence 9888888876544
No 102
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=95.76 E-value=0.54 Score=46.37 Aligned_cols=75 Identities=8% Similarity=-0.133 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 017117 56 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 135 (377)
Q Consensus 56 ~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~ 135 (377)
.++-.+.+++.+...|....+..|.- + ++...|++.....|+|..+++.+.+.+.+ .||++.|.+.++..+
T Consensus 103 ~~~~~~~g~~~~~~~~~~~~~~~~~~----~----~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~ 173 (396)
T TIGR00882 103 IVGGLYLGFVFSAGAGAIEAYIEKVS----R----NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFAL 173 (396)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHhh----h----hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHH
Confidence 34445566667777777666554421 1 12346778888999999999999988865 699999999877666
Q ss_pred HHHH
Q 017117 136 ISNM 139 (377)
Q Consensus 136 ~~l~ 139 (377)
+..+
T Consensus 174 ~~~~ 177 (396)
T TIGR00882 174 ILML 177 (396)
T ss_pred HHHH
Confidence 5543
No 103
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=95.67 E-value=0.049 Score=52.53 Aligned_cols=86 Identities=10% Similarity=0.064 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc---------
Q 017117 50 WQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------- 120 (377)
Q Consensus 50 ~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~--------- 120 (377)
.+...+.+++.+++.|.+...+...+++++.-++++ +.+..|+--.+..+|++++|++...+-.+
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 467889999999999999999999999999987543 45677888888999999999999876631
Q ss_pred -------cchhhHHHHHHHHHHHHHHHH
Q 017117 121 -------HGWGSAFGALAIAMGISNMLF 141 (377)
Q Consensus 121 -------~g~~~gF~i~~i~m~~~l~~f 141 (377)
..|++.|.+-++...+..+++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999995555544444444
No 104
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=95.64 E-value=0.071 Score=57.72 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-----------
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------- 120 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~----------- 120 (377)
...++++..+.++|.|+.-|...+++.|.++.+ .|...++++.++..+|.++++.+...+-.+
T Consensus 255 ~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~------~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~ 328 (742)
T TIGR01299 255 YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE------KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAY 328 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccc
Confidence 456777888999999999999999999999732 356778888888888888887766554433
Q ss_pred --cchhhHHHHHHHHHHHHHHHH
Q 017117 121 --HGWGSAFGALAIAMGISNMLF 141 (377)
Q Consensus 121 --~g~~~gF~i~~i~m~~~l~~f 141 (377)
.+|++.|.++++..+++++.+
T Consensus 329 ~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 329 QFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred ccccHHHHHHHHHHHHHHHHHHH
Confidence 368888888887766665544
No 105
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=95.60 E-value=0.11 Score=51.90 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhh------
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGS------ 125 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~-~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~------ 125 (377)
..+++...+.++|.|..-+...++.+|..|.++-+ .++++..++..+-+..++|..+++.+.+++-+..||..
T Consensus 312 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~~~~~~~~ 391 (437)
T TIGR00792 312 PLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYVANAAQSP 391 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcCCH
Confidence 34555667778888888899999999988754321 12235778899999999999999999999988887742
Q ss_pred ---------HHHHHHHHHHHHHHHHH
Q 017117 126 ---------AFGALAIAMGISNMLFF 142 (377)
Q Consensus 126 ---------gF~i~~i~m~~~l~~f~ 142 (377)
-..+|+++++++++++.
T Consensus 392 ~~~~~~~~~~~~~p~i~~~~~~~~~~ 417 (437)
T TIGR00792 392 ITLNGIKILMFAVPALFLLLAAIIIG 417 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456666666665543
No 106
>PRK09669 putative symporter YagG; Provisional
Probab=95.59 E-value=1.2 Score=44.85 Aligned_cols=82 Identities=6% Similarity=0.078 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-------ccchhhH
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSA 126 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~-------~~g~~~g 126 (377)
.+++...+..++...+...-.++++|.-++.++ |.+..++.....|+|..++..+.+.+.. ..||...
T Consensus 111 ~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e-----R~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~ 185 (444)
T PRK09669 111 YACVTYILLSLVYTAINVPYCAMPGAITNDPRE-----RHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYA 185 (444)
T ss_pred HHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence 333333344444446666677888887765332 5678888899999998887654432221 3578877
Q ss_pred HHHHHHHHHHHHHH
Q 017117 127 FGALAIAMGISNML 140 (377)
Q Consensus 127 F~i~~i~m~~~l~~ 140 (377)
+.+.++...+..++
T Consensus 186 ~~i~~ii~~v~~~~ 199 (444)
T PRK09669 186 MMVMGLLGVVLFFC 199 (444)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666555443
No 107
>PRK15075 citrate-proton symporter; Provisional
Probab=95.31 E-value=0.18 Score=50.73 Aligned_cols=73 Identities=19% Similarity=0.153 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH--------Hhccchhh
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI--------QMEHGWGS 125 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi--------~~~~g~~~ 125 (377)
.++++-.+.++|.|+.-|+...+..|.+++++ |.....++..+.|+|..+++.+...+ .+++||++
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 45667778899999999999999999997532 56677777777777766665555444 35789999
Q ss_pred HHHHHHH
Q 017117 126 AFGALAI 132 (377)
Q Consensus 126 gF~i~~i 132 (377)
.|.+..+
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9998654
No 108
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=95.27 E-value=1.7 Score=44.08 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~ 133 (377)
...+.+.+..+|.....-..-++..|.-++++.. +...=++.|...++|++++..+.+++.++.+++..|.++++.
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~ 163 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAAL 163 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHH
Confidence 3445566777887776666666776665544332 445557889999999999999999999999999999998877
Q ss_pred HHHHHHH
Q 017117 134 MGISNML 140 (377)
Q Consensus 134 m~~~l~~ 140 (377)
..+.++.
T Consensus 164 ~~l~~~~ 170 (433)
T PF03092_consen 164 PLLMLIV 170 (433)
T ss_pred HHHHHHH
Confidence 6666543
No 109
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=95.20 E-value=0.11 Score=56.20 Aligned_cols=76 Identities=8% Similarity=0.055 Sum_probs=57.9
Q ss_pred HHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Q 017117 60 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNM 139 (377)
Q Consensus 60 ~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~ 139 (377)
.+..+..++.-+.+.+..+|.|+.+ .|..++.+.+...++|+++++.+.+++.+. +....|.++++.++++.+
T Consensus 656 ~l~g~~~~~~~~~~~a~~aEl~Pt~------~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~l 728 (742)
T TIGR01299 656 CLFGGLSIAAWNALDVLTVELYPSD------KRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGL 728 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 3444444455567778889999742 378999999999999999999999888763 567788888888877666
Q ss_pred HHH
Q 017117 140 LFF 142 (377)
Q Consensus 140 ~f~ 142 (377)
+.+
T Consensus 729 l~~ 731 (742)
T TIGR01299 729 LAL 731 (742)
T ss_pred HHH
Confidence 544
No 110
>PRK09952 shikimate transporter; Provisional
Probab=95.17 E-value=0.2 Score=50.48 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--------hccchhh
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ--------MEHGWGS 125 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~--------~~~g~~~ 125 (377)
.+++.-.+.++|.|+.-|...++..|.++++. |....+....+.++|.+++..+..++. +++||++
T Consensus 127 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~ 200 (438)
T PRK09952 127 LLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRI 200 (438)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHH
Confidence 45566678899999999999999999887532 455667778888999988877666654 3589999
Q ss_pred HHHHHHHHHHH
Q 017117 126 AFGALAIAMGI 136 (377)
Q Consensus 126 gF~i~~i~m~~ 136 (377)
.|.+.++..++
T Consensus 201 ~f~~~~~~~l~ 211 (438)
T PRK09952 201 PFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHHH
Confidence 99998775443
No 111
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=95.14 E-value=2.3 Score=41.79 Aligned_cols=51 Identities=14% Similarity=-0.063 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHh
Q 017117 93 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 93 ~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~ 143 (377)
..+-..+.++..+|.+++..+..++.+++||+..|.+.++.+++..+..+.
T Consensus 132 ~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 132 AKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667779999999998999999999999999999888766655433
No 112
>PRK10054 putative transporter; Provisional
Probab=95.08 E-value=0.26 Score=49.01 Aligned_cols=94 Identities=18% Similarity=0.037 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i 132 (377)
+.+.++..+..+|.+..-|+..+.+.+.-+++ ++..+|+. +...++|+.+++.+.+++.|+.|+...|.+-++
T Consensus 299 ~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~------~~~~~~~~-~~~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~ 371 (395)
T PRK10054 299 LLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPG------MKASYFSA-QSLGWLGAAINPLVSGVILTTLPPWSLFVILAL 371 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcc------cceehHhH-HHHHHHHHHHHHHHHHHHHHHcChhhHHHHHHH
Confidence 34555677788888877787777777765532 24556654 345668999999999999999999999987555
Q ss_pred HHHHHHHHHHhcccccccCCCCCCc
Q 017117 133 AMGISNMLFFIGTPLYRHRLPGGSP 157 (377)
Q Consensus 133 ~m~~~l~~f~~g~~~y~~~~p~gs~ 157 (377)
.+.++.+.-. ++-+ .||-|.|
T Consensus 372 ~~~~~~~~~~---~~~~-~~~~~~~ 392 (395)
T PRK10054 372 AIVAAWLLML---KGMR-ARPWGQP 392 (395)
T ss_pred HHHHHHHHHH---hccc-cCcccCC
Confidence 4444433322 2232 3555554
No 113
>PRK09848 glucuronide transporter; Provisional
Probab=95.07 E-value=1.8 Score=43.51 Aligned_cols=34 Identities=6% Similarity=0.076 Sum_probs=26.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 017117 312 PDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT 345 (377)
Q Consensus 312 P~~m~s~~~gl~~l~~a~G~~l~~~l~~lv~~~t 345 (377)
+++..|..+|++.+..-+|..++..+...+=...
T Consensus 356 g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 356 GVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456799999999999999999888877654334
No 114
>PRK03699 putative transporter; Provisional
Probab=95.02 E-value=0.12 Score=51.24 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 017117 56 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 135 (377)
Q Consensus 56 ~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~ 135 (377)
.+...+.+++.|+.=|...+.+.++.+++++ ...++.+++.++|+.+++.+.+++.|..||..+|.+.++.++
T Consensus 298 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~ 370 (394)
T PRK03699 298 LYAILGLGFFSSAIYTTIITLGSQQTKVASP-------KLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYA 370 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHH
Confidence 3344555666666667777777877764332 345677888899999999999999999999999987777777
Q ss_pred HHHH
Q 017117 136 ISNM 139 (377)
Q Consensus 136 ~~l~ 139 (377)
++.+
T Consensus 371 ~~~~ 374 (394)
T PRK03699 371 VVFV 374 (394)
T ss_pred HHHH
Confidence 6654
No 115
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=94.88 E-value=0.27 Score=50.23 Aligned_cols=80 Identities=16% Similarity=0.125 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----h-----ccchh
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ----M-----EHGWG 124 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~----~-----~~g~~ 124 (377)
.+++.-.+.++|.|..-+ ....+++.|+++ +|.....+++...|+|+.++..+.+.+. + ..||+
T Consensus 126 ~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~------~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr 198 (476)
T PLN00028 126 GFIAVRFFIGFSLATFVS-CQYWMSTMFNGK------IVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWR 198 (476)
T ss_pred HHHHHHHHHHHHHHhhHH-HHHHHHHhcChh------heeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhH
Confidence 445555666777766533 344677878632 2567778888788888887766666553 2 25899
Q ss_pred hHHHHHHHHHHHHHHH
Q 017117 125 SAFGALAIAMGISNML 140 (377)
Q Consensus 125 ~gF~i~~i~m~~~l~~ 140 (377)
+.|.+.++..++..+.
T Consensus 199 ~~f~i~g~l~l~~~l~ 214 (476)
T PLN00028 199 IAFFVPGLLHIIMGIL 214 (476)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999988776654433
No 116
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=94.83 E-value=0.51 Score=47.64 Aligned_cols=78 Identities=5% Similarity=-0.060 Sum_probs=54.2
Q ss_pred HHHHHHHhccc-ccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH------HhccchhhHHHHH
Q 017117 58 VLYITGFGAAG-IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI------QMEHGWGSAFGAL 130 (377)
Q Consensus 58 ~L~lia~G~G~-~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi------~~~~g~~~gF~i~ 130 (377)
++.+...|.+. .-|+..+...|.|+++ +|.....+.+..-++|+.+++.+.+.+ .+++||...|.+-
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~------~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 442 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNA------IRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIY 442 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChh------HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHH
Confidence 44444444432 4588888999998632 368888888888888888886666544 4688999999887
Q ss_pred HHHHHHHHHHH
Q 017117 131 AIAMGISNMLF 141 (377)
Q Consensus 131 ~i~m~~~l~~f 141 (377)
++..+++.+..
T Consensus 443 ~~~~~~~~~~~ 453 (479)
T PRK10077 443 GCMGVLAALFM 453 (479)
T ss_pred HHHHHHHHHHH
Confidence 76666555543
No 117
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=94.81 E-value=0.15 Score=51.49 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=47.5
Q ss_pred hhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Q 017117 75 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAI-VAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 142 (377)
Q Consensus 75 ~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl-~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~ 142 (377)
.+..|.++++ ++.+.+.++.+..++|+. +++.+.+++.|+.||+.+|.++++..+++++...
T Consensus 370 ~~~~~~~p~~------~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 370 LHALELAPKK------AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHHHHcChh------hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3445655432 367888888888899865 4789999999999999999988887777755444
No 118
>PRK15011 sugar efflux transporter B; Provisional
Probab=94.72 E-value=0.36 Score=47.72 Aligned_cols=73 Identities=10% Similarity=-0.007 Sum_probs=53.7
Q ss_pred HhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHh
Q 017117 64 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 64 ~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~ 143 (377)
++.|..-+...+...|.+++ ++....+++....|+|..+++.+.+++.|+.||+..|.++++..++++++.+.
T Consensus 317 ~~~g~~~~~~~~~~~~~~p~-------~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 317 IYIGILGGIGMLYFQDLMPG-------QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred HHHHHHHHHHHHHHHHhCCC-------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 33333333344445555542 14567777888899999999999999999999999999998888888776654
No 119
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=94.69 E-value=0.17 Score=50.47 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc---c-hhhHHHHH
Q 017117 55 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---G-WGSAFGAL 130 (377)
Q Consensus 55 ~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~---g-~~~gF~i~ 130 (377)
+.+...+..+|.+...|...+...+..++++ +.+.+.++.+..++|..+++.+.+++-|+. + ....|.+.
T Consensus 300 ~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~ 373 (400)
T PRK11646 300 LFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMML 373 (400)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHH
Confidence 4445566778888888999999998887533 567888888999999999999999998764 2 34566665
Q ss_pred HHHHHHHHHHHH
Q 017117 131 AIAMGISNMLFF 142 (377)
Q Consensus 131 ~i~m~~~l~~f~ 142 (377)
++..+++.+++.
T Consensus 374 ~~~~~~~~~~~~ 385 (400)
T PRK11646 374 GIIGLITLLALY 385 (400)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 120
>PRK09669 putative symporter YagG; Provisional
Probab=94.58 E-value=0.31 Score=49.07 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG 124 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~-~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~ 124 (377)
...+++...+.++|.|..-|...++.+|..|.++.+. +++...+|+.+.++.++|..+++.+.+++-+..||.
T Consensus 319 ~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 319 VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4456777788999999999999999999988544322 223456788999999999999999999998888874
No 121
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=94.57 E-value=6.4 Score=40.50 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=37.7
Q ss_pred HHhhccCchhhHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 017117 306 FLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG 346 (377)
Q Consensus 306 ~~~~~aP~~m~s~~~gl~~l~~a~G~~l~~~l~~lv~~~t~ 346 (377)
++.+..|++..+...|+|-++.=..+.++..+..++...|+
T Consensus 404 ~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 404 LFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56799999999999999999999999999999999988775
No 122
>PRK03893 putative sialic acid transporter; Provisional
Probab=94.49 E-value=0.24 Score=50.28 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=49.3
Q ss_pred ccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q 017117 69 IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 138 (377)
Q Consensus 69 ~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l 138 (377)
.-+...+...|.++++ ++.+.+++++...++|+.+++.+.+++.|+.||+..|.+.++++.+..
T Consensus 383 ~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~ 446 (496)
T PRK03893 383 ISGLLPKLIGGYFDTE------QRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVV 446 (496)
T ss_pred cchhhHHHHHhhCCHH------HhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 3455666777777632 368889999999999999999999999999999988866555444433
No 123
>PRK09848 glucuronide transporter; Provisional
Probab=94.40 E-value=0.32 Score=49.04 Aligned_cols=90 Identities=11% Similarity=0.079 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh------
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG------ 124 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~-~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~------ 124 (377)
.+.+++++.+.++|.|...+...++.+|.-|+++-+. +++...+++.+-+..++|..+++.+.+.+-+..||.
T Consensus 319 ~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~~~~~~~~ 398 (448)
T PRK09848 319 LPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQT 398 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCC
Confidence 3456677888999999999999999998877544221 223466678899999999999998888876665552
Q ss_pred --------hHH-HHHHHHHHHHHHHH
Q 017117 125 --------SAF-GALAIAMGISNMLF 141 (377)
Q Consensus 125 --------~gF-~i~~i~m~~~l~~f 141 (377)
..+ .+|+++++++++++
T Consensus 399 ~~~~~~i~~~~~~~p~~~~~~~~~~~ 424 (448)
T PRK09848 399 PEVIMGIRTSIALVPCGFMLLAFVII 424 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 56666666666655
No 124
>PRK11010 ampG muropeptide transporter; Validated
Probab=94.26 E-value=0.53 Score=48.37 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=53.8
Q ss_pred ccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhccc
Q 017117 71 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTP 146 (377)
Q Consensus 71 pnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~g~~ 146 (377)
+...++..+..+++- ....+.+++...++|..+++.+.+++.|..||...|.+.++..+++++.....++
T Consensus 335 ~~~~a~~~~l~~~~~------~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 335 AAFVALLMTLCNKSF------SATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHcCCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555556655432 2455778888889999888889999999999999999999999988887765544
No 125
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=94.25 E-value=0.37 Score=47.52 Aligned_cols=80 Identities=8% Similarity=-0.004 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhhHHHHHHHH
Q 017117 55 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGALAIA 133 (377)
Q Consensus 55 ~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~-g~~~gF~i~~i~ 133 (377)
+++...+.+++.++..+...++..|.+++++ +.....+++...++|+.+++.+.+++-++. +|...|.+....
T Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~ 384 (406)
T PRK11551 311 MLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPV 384 (406)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHH
Confidence 4445555666666777888888888886432 678889999999999999999999998764 455666666555
Q ss_pred HHHHHHH
Q 017117 134 MGISNML 140 (377)
Q Consensus 134 m~~~l~~ 140 (377)
.+++.+.
T Consensus 385 ~~~~~~~ 391 (406)
T PRK11551 385 ILVAALA 391 (406)
T ss_pred HHHHHHH
Confidence 5554443
No 126
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=94.00 E-value=0.55 Score=46.24 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY-~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
+.++..-.+-++..|.+-+....++.++ ++++ +..+...|. .+..+|..+++.+.+++.|++|+ ..|.+.+
T Consensus 294 ~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~ 365 (382)
T TIGR00902 294 PLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMA 365 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHH
Confidence 4455566777778888888888888765 4322 344455554 36679999999999999999997 6677777
Q ss_pred HHHHHHHHHH
Q 017117 132 IAMGISNMLF 141 (377)
Q Consensus 132 i~m~~~l~~f 141 (377)
+..++++++.
T Consensus 366 ~~~~~~~~~~ 375 (382)
T TIGR00902 366 IIAAAAFFLI 375 (382)
T ss_pred HHHHHHHHHH
Confidence 7666665543
No 127
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=93.99 E-value=0.28 Score=47.83 Aligned_cols=73 Identities=16% Similarity=0.209 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHH
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAI 132 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g-~~~gF~i~~i 132 (377)
.+.+++.+..+..++.-+...++..|.++++ ++.+.+.+++...++|+.+++.+.+++.|+.| |..+|....+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~~~~ 403 (405)
T TIGR00891 330 VLGLGLFFQQMLVQGIWGILPKHLGEYFPTD------QRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALASLSF 403 (405)
T ss_pred HHHHHHHHHHHHHccchhhHHHHHhhhCCcc------hhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHhhcc
Confidence 3444444555555555666777888877642 26788999999999999999999999999999 8888776544
No 128
>PRK11462 putative transporter; Provisional
Probab=93.81 E-value=1.3 Score=45.15 Aligned_cols=84 Identities=10% Similarity=0.123 Sum_probs=51.5
Q ss_pred HHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------cchhhHHHHH
Q 017117 58 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-------HGWGSAFGAL 130 (377)
Q Consensus 58 ~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~-------~g~~~gF~i~ 130 (377)
...+..++--.+.-.-.+++++.=+|.++ |.+..+|.-++-++|.++++.+.+.+-+. .||.....+.
T Consensus 115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~ 189 (460)
T PRK11462 115 TYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVL 189 (460)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 33334555555666666777777765332 67888888889999887776664333222 3677766666
Q ss_pred HHHHHHHHHHHHhccc
Q 017117 131 AIAMGISNMLFFIGTP 146 (377)
Q Consensus 131 ~i~m~~~l~~f~~g~~ 146 (377)
++..++...+...+.|
T Consensus 190 ~ii~~i~~~i~~~~~k 205 (460)
T PRK11462 190 SVVAFMMLAFCFFTTK 205 (460)
T ss_pred HHHHHHHHHHHHhcce
Confidence 6665555544444443
No 129
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=93.66 E-value=0.25 Score=50.21 Aligned_cols=80 Identities=19% Similarity=0.139 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc---chhhHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH---GWGSAFG 128 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~---g~~~gF~ 128 (377)
...+++.-.+..+|.|..-|...+...|-|++++ |...+.++-.+.++|..+++.+..++.+.. +|+..|.
T Consensus 122 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~ 195 (467)
T PRK09556 122 LGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFI 195 (467)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHH
Confidence 4566667777888888888999999999998643 567778888899999999988888776653 6888888
Q ss_pred HHHHHHHHH
Q 017117 129 ALAIAMGIS 137 (377)
Q Consensus 129 i~~i~m~~~ 137 (377)
++++..++.
T Consensus 196 ~~g~~~~~~ 204 (467)
T PRK09556 196 FPSIIALII 204 (467)
T ss_pred HHHHHHHHH
Confidence 877655543
No 130
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=93.51 E-value=0.29 Score=49.11 Aligned_cols=70 Identities=17% Similarity=0.339 Sum_probs=55.2
Q ss_pred ccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHhccchhhHHHHHHHH-HHHHHHHHHhccc
Q 017117 71 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLV--VYIQMEHGWGSAFGALAIA-MGISNMLFFIGTP 146 (377)
Q Consensus 71 pnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~--~yi~~~~g~~~gF~i~~i~-m~~~l~~f~~g~~ 146 (377)
|.....++.=|..+ +|.+..+++-.+-|+|+.+.+.++ .++.++.+|+.+|.+|++. ++++++.+..++.
T Consensus 136 pp~~~~i~~Wfsr~------eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 136 PPCARTITHWFSRK------ERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred cHHHHHHHHHcCcc------ccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55555566666532 278888999999999999999999 9999999999999999876 5567777766654
No 131
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=93.10 E-value=1.2 Score=44.54 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCC
Q 017117 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (377)
Q Consensus 3 ~i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~ 82 (377)
+|+.|..+|.+|..+..=.+. .....+|..+|.+++.|-|..+....|++++..+
T Consensus 80 gi~lgL~l~avg~~lF~pAa~-------------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~ 134 (422)
T COG0738 80 GIVLGLLLYAVGAALFWPAAS-------------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLGK 134 (422)
T ss_pred HHHHHHHHHHHHHHHHhhhhh-------------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCC
Confidence 577888888888766553222 1246788999999999999999999999999999
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017117 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM 119 (377)
Q Consensus 83 ~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~ 119 (377)
++...+|- |.-=-...+|+.++|.+..++-.
T Consensus 135 ~~~a~~rl------nl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 135 PESAAFRL------NLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred chhHHHHH------HHHHHhhhhHHHHHHHHHHHHHH
Confidence 75432221 11122236899999888887754
No 132
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=93.06 E-value=0.56 Score=48.83 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=48.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHh
Q 017117 91 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 91 ~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~ 143 (377)
.+.+.++.|.+..+.|.-+|..+.+++.+.+|-..++.+++++++++.++...
T Consensus 340 ~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 340 VRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR 392 (524)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999998888887654
No 133
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=92.98 E-value=1.3 Score=43.93 Aligned_cols=78 Identities=12% Similarity=0.030 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i 132 (377)
+.++.+..+.++|.+..-+...++..+..+++ ..+..++++...++|..+++.+.+++.|.+|+...|..+++
T Consensus 306 ~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~ 378 (394)
T PRK10213 306 IVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGT 378 (394)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHH
Confidence 44555677778888888888888888776532 23445667778899999999999999999999999988877
Q ss_pred HHHHH
Q 017117 133 AMGIS 137 (377)
Q Consensus 133 ~m~~~ 137 (377)
...+.
T Consensus 379 ~~~~~ 383 (394)
T PRK10213 379 LMLLT 383 (394)
T ss_pred HHHHH
Confidence 65443
No 134
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=92.93 E-value=1.2 Score=43.75 Aligned_cols=72 Identities=8% Similarity=0.066 Sum_probs=53.4
Q ss_pred HhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Q 017117 64 FGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 140 (377)
Q Consensus 64 ~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~ 140 (377)
++.|..-+...+...+..++++ .+.+.+.++....++|..+++.+.+++.|..||...|.++++..+++.+.
T Consensus 315 ~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 315 LITGITSVAIYTAFMRFAGDGD-----QAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 3345544555556555554322 25678888888889999999999999999999999999988877766543
No 135
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=92.91 E-value=0.52 Score=46.49 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=39.3
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Q 017117 93 DRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 140 (377)
Q Consensus 93 ~s~F~~-fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~ 140 (377)
...+.. +.+..++|+.+++.+.+++-|..||+..|.+.++..+++.++
T Consensus 342 at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 342 ATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred EEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 344444 557899999999999999999999999999988887766554
No 136
>PRK09952 shikimate transporter; Provisional
Probab=92.85 E-value=1.4 Score=44.47 Aligned_cols=83 Identities=12% Similarity=0.021 Sum_probs=59.5
Q ss_pred HHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHhcc--chhhHHHHHHH
Q 017117 56 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSV-TVGAIVAFTLVVYIQMEH--GWGSAFGALAI 132 (377)
Q Consensus 56 ~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~i-NiGsl~a~~~~~yi~~~~--g~~~gF~i~~i 132 (377)
.+.+.+..++.|..-+...++..|.|+.+ .|.++..+-|... .+|+.+++.+++++.+.. +|...|...++
T Consensus 347 ~~~~~l~~~~~~~~~~~~~~~~~e~~p~~------~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~ 420 (438)
T PRK09952 347 FFSIMLANIAHDMVVCVQQPMFTEMFGAS------YRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLA 420 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcc------hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 34455556777777777888999999752 2556777756544 488889999999997743 48888888888
Q ss_pred HHHHHHHHHHhc
Q 017117 133 AMGISNMLFFIG 144 (377)
Q Consensus 133 ~m~~~l~~f~~g 144 (377)
..+++.+..+..
T Consensus 421 ~~~i~~v~~~~~ 432 (438)
T PRK09952 421 GCLISAMTALLM 432 (438)
T ss_pred HHHHHHHHHHHc
Confidence 777777665543
No 137
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=92.81 E-value=1.3 Score=43.77 Aligned_cols=72 Identities=14% Similarity=-0.038 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~ 130 (377)
...+++++.+.++|.|..-|...+..-+.-+ + ++.+.+..+++..++|..+++.+.+++-+..++.....++
T Consensus 309 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~--~-----~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~ 380 (406)
T PRK15402 309 YLWLTAGLSLYAFGIGLANAGLYRLTLFSSD--V-----SKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFN 380 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc--c-----cccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHH
Confidence 3446778888889998887766655433221 1 2678888889999999999999999998887765544443
No 138
>PRK11663 regulatory protein UhpC; Provisional
Probab=92.52 E-value=0.35 Score=48.62 Aligned_cols=52 Identities=23% Similarity=0.269 Sum_probs=45.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Q 017117 91 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 142 (377)
Q Consensus 91 ~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~ 142 (377)
++.....+.++..++|+.+++.+.+++.|..||...|.+.++..+++.++.+
T Consensus 370 ~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 370 AAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred hHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 3678888999999999999999999999999999999999888777665444
No 139
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=92.47 E-value=1.2 Score=46.02 Aligned_cols=103 Identities=17% Similarity=0.293 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCC
Q 017117 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (377)
Q Consensus 3 ~i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~ 82 (377)
+++++.+++.+|.++...+. ....+++|=.+..+|.|+.--.++.+++|-=+
T Consensus 121 ~l~~~~~~~~iG~ii~~~a~----------------------------~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap 172 (513)
T KOG0254|consen 121 TLLLAVVLFLIGAIIIALAP----------------------------SWYQLIVGRILTGLGVGGASVLAPVYISEIAP 172 (513)
T ss_pred HHHHHHHHHHHHHHHHHHhh----------------------------hHHHHHHHHHHhccchhhhhhcchhhHhhcCC
Confidence 67888899999988887752 24678999999999999997555555554432
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc--cchhhHHHHHHHHHHHHHHH
Q 017117 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--HGWGSAFGALAIAMGISNML 140 (377)
Q Consensus 83 ~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~--~g~~~gF~i~~i~m~~~l~~ 140 (377)
+ +.|...-+.+...+++|.+++.. +.+.-++ ++|+..+++..+.-++-.+.
T Consensus 173 ~------~~RG~l~~~~~l~~~~Gi~~~~~-~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 173 A------HIRGTLVSLYQLFITIGILLGYC-INYGTSKVYAGWRIPLGLALIPAVILALG 225 (513)
T ss_pred h------hhhHHHHHHHHHHHHHHHHHHHH-HhhhhccCCccHHHHHHHHHHHHHHHHHH
Confidence 1 24677888899999999999944 4444444 49998877665554443333
No 140
>PF13347 MFS_2: MFS/sugar transport protein
Probab=92.24 E-value=0.85 Score=45.66 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDY-KTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG 124 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~-~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~ 124 (377)
+.+.+++...+..+|.|..-+...++.+|.-|.++-|. +++....++.+-+...+|..++..+.+.+-+..||.
T Consensus 314 ~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 314 SPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred hHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 35678888999999999999999999999998765332 233467788899999999999999988886665554
No 141
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=92.11 E-value=0.84 Score=47.11 Aligned_cols=121 Identities=14% Similarity=0.171 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCCC
Q 017117 4 FFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 83 (377)
Q Consensus 4 i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~ 83 (377)
+.+|.++..+|++++.+....+. ++ ...+...+.....++++|.+++-|...++..++-++
T Consensus 353 ~~~G~~l~~l~f~~l~~~~~~~~------~~-------------~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~ 413 (500)
T PRK09584 353 FAIGMVLCSGAFLVLPLGAKFAN------DA-------------GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQ 413 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC------CC-------------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcH
Confidence 56677777788777766533111 11 123444677788899999999999999998888543
Q ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----------ccchhhHHHHHHHHHHHHHHHHHhcccccc
Q 017117 84 RSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EHGWGSAFGALAIAMGISNMLFFIGTPLYR 149 (377)
Q Consensus 84 ~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~----------~~g~~~gF~i~~i~m~~~l~~f~~g~~~y~ 149 (377)
+.|......|+++.-+|++++..+..+... +.+++..|..-++..++..++++.-.++.+
T Consensus 414 ------~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~ 483 (500)
T PRK09584 414 ------RLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLN 483 (500)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 247888889999999999888777654431 224788888887776655555554444443
No 142
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=92.05 E-value=0.6 Score=45.03 Aligned_cols=77 Identities=13% Similarity=-0.006 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhccc-hhhHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEHG-WGSAFGAL 130 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY-~~iNiGsl~a~~~~~yi~~~~g-~~~gF~i~ 130 (377)
..++..+.+..++.|..-+...++..|.+++++ |.+.+...| ++..+|+.+++.+.+++.|+.| |+..+...
T Consensus 313 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~ 386 (394)
T TIGR00883 313 TLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYL 386 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHH
Confidence 345566677778888888999999999997543 345555544 5556899899999999999988 77666655
Q ss_pred HHHHH
Q 017117 131 AIAMG 135 (377)
Q Consensus 131 ~i~m~ 135 (377)
++..+
T Consensus 387 ~~~~l 391 (394)
T TIGR00883 387 AALAL 391 (394)
T ss_pred HHHHH
Confidence 55443
No 143
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=92.03 E-value=0.74 Score=48.60 Aligned_cols=85 Identities=14% Similarity=0.177 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...+..|..+..+|+|... .....++|..+. |. |--++.+..+..-+....++.+...+..+-+|+|+|.+.+
T Consensus 131 ~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~---k~---R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~ 203 (599)
T PF06609_consen 131 MNTFIAGMVLYGVGAGVQE-LAALAISELVPN---KW---RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFI 203 (599)
T ss_pred HHHHHHHHHHHHHhhHHHH-HHHHHHHHhccc---ch---hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHH
Confidence 4568889999999988765 455567888753 21 2222222222211222233444444445679999999999
Q ss_pred HHHHHHHHHHHh
Q 017117 132 IAMGISNMLFFI 143 (377)
Q Consensus 132 i~m~~~l~~f~~ 143 (377)
+...++++...+
T Consensus 204 i~~~i~~vl~~~ 215 (599)
T PF06609_consen 204 IWSGIALVLIFF 215 (599)
T ss_pred HHHHHHHHHHHH
Confidence 988887765443
No 144
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.68 E-value=2.1 Score=46.03 Aligned_cols=92 Identities=17% Similarity=0.286 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh------------
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------------ 119 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~------------ 119 (377)
..+|++|..+.++|.-- +.++|---.||...++ +...++.++|..--+|-.+|.++.++.-+
T Consensus 237 ~llff~~q~l~GIG~Tp----i~tlGisYiDDnvk~~--~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~i 310 (735)
T KOG3626|consen 237 FLLFFLGQLLLGIGATP----IFTLGISYIDDNVKKK--NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGI 310 (735)
T ss_pred HHHHHHHHHHhhcCCCC----CccCCCcccccccccc--CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCC
Confidence 45778888888888644 4566666666655432 35678888888888898888888877632
Q ss_pred ------ccc-hhhHHHHHHHHHHHHHHHHHhcccccc
Q 017117 120 ------EHG-WGSAFGALAIAMGISNMLFFIGTPLYR 149 (377)
Q Consensus 120 ------~~g-~~~gF~i~~i~m~~~l~~f~~g~~~y~ 149 (377)
.+| ||+||++++..++++.+.++.-=+.+.
T Consensus 311 t~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp 347 (735)
T KOG3626|consen 311 TPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP 347 (735)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc
Confidence 133 999999999999988887766444443
No 145
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=91.51 E-value=2.6 Score=43.43 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHH
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAI 132 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g-~~~gF~i~~i 132 (377)
-||+-=.++++..|+..+..-++.++.-++++ ...+|..|-+.--..++++|++.+.+.+..| -++||..-.+
T Consensus 382 ~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~ 455 (477)
T PF11700_consen 382 EFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLV 455 (477)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 35555557899999999999999999998754 3799999999999999999999999998876 8999999999
Q ss_pred HHHHHHHHHHh
Q 017117 133 AMGISNMLFFI 143 (377)
Q Consensus 133 ~m~~~l~~f~~ 143 (377)
.++++++++..
T Consensus 456 lf~~gl~ll~~ 466 (477)
T PF11700_consen 456 LFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHhh
Confidence 99999888753
No 146
>PRK10091 MFS transport protein AraJ; Provisional
Probab=91.35 E-value=2.6 Score=41.34 Aligned_cols=45 Identities=4% Similarity=-0.091 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHHHHh
Q 017117 99 FYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 99 fY~~iNiGsl~a~~~~~yi~~~-~g~~~gF~i~~i~m~~~l~~f~~ 143 (377)
.....++|..+++.+.+++-|+ .||+..|.+.++...+++.....
T Consensus 329 ~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 329 GQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence 3566789999999999998885 78999999998887777665544
No 147
>PRK10429 melibiose:sodium symporter; Provisional
Probab=91.18 E-value=2 Score=43.76 Aligned_cols=91 Identities=15% Similarity=0.077 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh------
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKD-YKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG------ 124 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~-~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~------ 124 (377)
...+++...+..+|.|..-+...++.+|.-|.++-+ .+++...+|+.+-+...+|..+++.+.+++-+..||.
T Consensus 324 ~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy~~~~~q~ 403 (473)
T PRK10429 324 ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGYVPNVEQS 403 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCC
Confidence 345566667788899998899999999998765322 1223355788999999999999999999987766652
Q ss_pred ---------hHHHHHHHHHHHHHHHHH
Q 017117 125 ---------SAFGALAIAMGISNMLFF 142 (377)
Q Consensus 125 ---------~gF~i~~i~m~~~l~~f~ 142 (377)
.-..+|+++++++.+++.
T Consensus 404 ~~~~~~i~~~~~~~p~~~~~~~~~~~~ 430 (473)
T PRK10429 404 AQTLLGMQFIMIGLPTLFFMITLVLYF 430 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222356666666665543
No 148
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=91.14 E-value=3.2 Score=42.45 Aligned_cols=71 Identities=8% Similarity=-0.097 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGA 129 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g-~~~gF~i 129 (377)
..++++..+.+++.|+.-+...+...+.|+++ .|.....+.|-..++++.+++.+.+++.+..+ |...+.+
T Consensus 343 ~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~------~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~ 414 (490)
T PRK10642 343 GLIFAGLLMLAVILNCFTGVMASTLPAMFPTH------IRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYY 414 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 34455555555555555555667777877643 25677887666667777788889999887654 5544433
No 149
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=91.10 E-value=1.1 Score=43.07 Aligned_cols=72 Identities=13% Similarity=0.019 Sum_probs=56.6
Q ss_pred HHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Q 017117 57 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGI 136 (377)
Q Consensus 57 ~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~ 136 (377)
.++.++++|.+.+-|++.+...+.++++.. ..+.. ...-.+|+.+.|.+.+++.|..|.+.+|.++.++.+.
T Consensus 235 ~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~-----~asai---~~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~~~~ 306 (310)
T TIGR01272 235 WFVLALGLFNSIMFPTIFSLALNALGRHTS-----QGSGI---LCLAIVGGAIVPLLQGSLADCLGIQLAFALPVPCYLY 306 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----hhHHH---HHHHHhcchHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 366688999999999999999999875432 23333 2456689999999999999999999999987776553
No 150
>PTZ00207 hypothetical protein; Provisional
Probab=90.64 E-value=2.9 Score=44.27 Aligned_cols=102 Identities=11% Similarity=0.019 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCC
Q 017117 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (377)
Q Consensus 3 ~i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~ 82 (377)
++.++.++..+|+++..++.. ... + .+.+.+++...+.++|.|.+-+.......+-|+
T Consensus 93 vllig~ll~~iG~ll~ala~~-~~i-~--------------------~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp 150 (591)
T PTZ00207 93 IFVLSMTVFCLGTLLFALTFQ-EVI-E--------------------GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP 150 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-ccc-c--------------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 567888899999988887532 111 1 135667778888889998888877788888885
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhccchhhHHHHHHHHHH
Q 017117 83 ERSKDYKTHLDRFFNFFYLSVTVGAI-VAFTLVVYIQMEHGWGSAFGALAIAMG 135 (377)
Q Consensus 83 ~~~~~~~~~~~s~F~~fY~~iNiGsl-~a~~~~~yi~~~~g~~~gF~i~~i~m~ 135 (377)
+ +|.....+...+.++|+. ++++...++.++ |+..|.+.++..+
T Consensus 151 ~-------~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~--~~~~fl~l~vl~~ 195 (591)
T PTZ00207 151 S-------NRGAVVAIMKTFTGLGSAILGSIQLAFFSDN--TSAYFFFLMSFAL 195 (591)
T ss_pred h-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 2 257889999999999996 466666676654 5555555444433
No 151
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=90.57 E-value=2.2 Score=42.25 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=50.3
Q ss_pred HHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Q 017117 62 TGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 141 (377)
Q Consensus 62 ia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f 141 (377)
.+++.+..-+....+..+.++.+ -+.++....++|..++..+.+++.|..||...|.+.++..+++.++.
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 317 GGMGTAAFVALLMALCNRSFSAT----------QYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHHHHHHHHHhcCCCCcHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666665521 23555555578887777789999999999999999998888877665
Q ss_pred Hh
Q 017117 142 FI 143 (377)
Q Consensus 142 ~~ 143 (377)
..
T Consensus 387 ~~ 388 (402)
T PRK11902 387 WL 388 (402)
T ss_pred HH
Confidence 43
No 152
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=90.49 E-value=1.2 Score=44.10 Aligned_cols=81 Identities=17% Similarity=0.078 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~ 133 (377)
..++...+.+++.++.-|. .+...+. + |+ ++...+.+++...++|+.+++.+.+++-|..||...|.+.++.
T Consensus 318 ~~~~~~~~~G~~~~~~~~~-~~~~~~~-~---~~---~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~ 389 (402)
T TIGR00897 318 VALIIAIALGIFLAGYVPL-AAVFPTL-A---PK---HKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAAL 389 (402)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHhh-C---cc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 3444455556666655443 3344332 2 21 3689999999999999999999999999999999999998888
Q ss_pred HHHHHHHHH
Q 017117 134 MGISNMLFF 142 (377)
Q Consensus 134 m~~~l~~f~ 142 (377)
.+++.++..
T Consensus 390 ~~i~~~~~~ 398 (402)
T TIGR00897 390 YVVSAFLTA 398 (402)
T ss_pred HHHHHHHHH
Confidence 777665543
No 153
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=90.47 E-value=0.95 Score=43.18 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 122 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g 122 (377)
...+++...+.++|.|..-|...++..|.++++ ++.+.++.++...++|..+++.+.+++.|+.|
T Consensus 301 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 301 FPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAE------LLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455677788889999999899899999988742 36899999999999999999999999998765
No 154
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=90.45 E-value=2.2 Score=48.18 Aligned_cols=77 Identities=13% Similarity=0.131 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGALA 131 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~-~~g~~~gF~i~~ 131 (377)
..+.+++.+++++.|++-+...+++.+..+++. +.++++++.+..++|.++++.+...+.. .+++...|.+.+
T Consensus 323 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~ 396 (1146)
T PRK08633 323 ASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIA 396 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 445666777888889888888888887776432 6788888899999999877766665543 345555666555
Q ss_pred HHHH
Q 017117 132 IAMG 135 (377)
Q Consensus 132 i~m~ 135 (377)
+..+
T Consensus 397 ~~~~ 400 (1146)
T PRK08633 397 LVTL 400 (1146)
T ss_pred HHHH
Confidence 4433
No 155
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=90.35 E-value=2.6 Score=42.70 Aligned_cols=63 Identities=19% Similarity=0.078 Sum_probs=49.1
Q ss_pred hhhhccCCCCChhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHh------------ccchhhHHHHHHHHHHHHHHHH
Q 017117 75 SFGADQFDERSKDYKTHLDRFFNFFYLSVTV-GAIVAFTLVVYIQM------------EHGWGSAFGALAIAMGISNMLF 141 (377)
Q Consensus 75 ~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNi-Gsl~a~~~~~yi~~------------~~g~~~gF~i~~i~m~~~l~~f 141 (377)
....|.++++ .+.......-...|+ |..+++.+.+++.| ..||..+|.+..++++++.+..
T Consensus 372 ~~~~~~~p~~------~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 445 (467)
T PRK09556 372 VAAVGFVPKK------AIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM 445 (467)
T ss_pred HHHHhhcchh------hHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence 4455666532 256777888888886 77899999999999 6789999999999888887766
Q ss_pred Hh
Q 017117 142 FI 143 (377)
Q Consensus 142 ~~ 143 (377)
+.
T Consensus 446 ~~ 447 (467)
T PRK09556 446 AI 447 (467)
T ss_pred HH
Confidence 53
No 156
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=90.31 E-value=2.2 Score=42.25 Aligned_cols=91 Identities=21% Similarity=0.305 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhhHHHH
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH-GWGSAFGA 129 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~-g~~~gF~i 129 (377)
+...++.|-.++.+|-+..+--+++++-+-|+++ ....-..|-++.++|+.++..+++.+.++. ||+.+.+.
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 4567888999999999988888899988888743 456778899999999999999998888877 79999999
Q ss_pred HHHHHHHHHHHHHhccccc
Q 017117 130 LAIAMGISNMLFFIGTPLY 148 (377)
Q Consensus 130 ~~i~m~~~l~~f~~g~~~y 148 (377)
=++--++++++++-...++
T Consensus 171 WAl~allAl~~WlPq~~r~ 189 (395)
T COG2807 171 WALLALLALLIWLPQALRE 189 (395)
T ss_pred HHHHHHHHHHHHhhhcccc
Confidence 8888888888887764333
No 157
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=90.12 E-value=2.7 Score=41.28 Aligned_cols=79 Identities=11% Similarity=0.086 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY-~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~ 130 (377)
.+.+++...+.+++.|..-|.......++ ++++ +.+....+. +..++|..+++.+.+++.|..|+. .|.+.
T Consensus 293 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~-~~~~~ 364 (382)
T PRK11128 293 LPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAG-VFWVM 364 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHH
Confidence 34456666777777777767666665554 2211 234555554 455678789999999999999984 55554
Q ss_pred HHHHHHHH
Q 017117 131 AIAMGISN 138 (377)
Q Consensus 131 ~i~m~~~l 138 (377)
++.-++++
T Consensus 365 ~~~~~~~~ 372 (382)
T PRK11128 365 ALVALPAL 372 (382)
T ss_pred HHHHHHHH
Confidence 44444443
No 158
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=90.03 E-value=3.2 Score=42.54 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=48.1
Q ss_pred cccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------cchhhHHHHHHHHHHHHHH
Q 017117 70 RPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME----------HGWGSAFGALAIAMGISNM 139 (377)
Q Consensus 70 Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~----------~g~~~gF~i~~i~m~~~l~ 139 (377)
-|....+.+|.|+.+ .|..+..+.+...++|+++++.+.+++.+. .|+...|.+.++..+++.+
T Consensus 410 ~~~~~~~~~E~~p~~------~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i 483 (502)
T TIGR00887 410 NATTFIVPGEVFPTR------YRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL 483 (502)
T ss_pred CchhhhhhhccCchh------HHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH
Confidence 344555667888743 378999999999999999999999999873 4556677777766666644
No 159
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=89.84 E-value=0.93 Score=43.41 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=45.8
Q ss_pred HHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHH
Q 017117 60 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAF 127 (377)
Q Consensus 60 ~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF 127 (377)
.+++...++.-+...+...|.++++ .+...+.++....++|..+++.+.+++.|++||..+|
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 318 FALGFLVYGPQMLIGVIASELAPKK------AAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHHhhhhHHHHHHHHHhcCcc------hhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 3333333444444556667777542 3678899999999999999999999999999998765
No 160
>PRK10504 putative transporter; Provisional
Probab=89.31 E-value=2.8 Score=42.27 Aligned_cols=64 Identities=9% Similarity=0.109 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 017117 55 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWG 124 (377)
Q Consensus 55 ~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~ 124 (377)
+.+.+.+.++|.|..-+...++..+..+++ .+...+.++.+..++|..+++.+.+.+-+..|+.
T Consensus 356 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 356 LPFVLFLQGMVNSTRFSSMNTLTLKDLPDN------LASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHH------hccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344555666777777777777777776643 3578899999999999999999998887766653
No 161
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=89.06 E-value=1.6 Score=43.75 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=48.2
Q ss_pred hhhhccCCCCChhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHh
Q 017117 75 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGA-IVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 75 ~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGs-l~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~ 143 (377)
....|.++++ .+..+..+++...++|+ ++++.+.+++.|+.||..+|.+.++..+++++..+.
T Consensus 368 ~~~~~~~~~~------~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T TIGR00712 368 LHALELAPKK------AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 431 (438)
T ss_pred HHHHHhcChh------heeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 3455666532 25678888888888875 678999999999999999999888877777766553
No 162
>TIGR00898 2A0119 cation transport protein.
Probab=88.95 E-value=2.6 Score=42.89 Aligned_cols=71 Identities=15% Similarity=0.069 Sum_probs=49.3
Q ss_pred HHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Q 017117 63 GFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLF 141 (377)
Q Consensus 63 a~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f 141 (377)
..+.++.-+....+.+|.|+.+ .|..+..+..+...+|+.+++.+.. +. +.++...|.+.++..+++.+..
T Consensus 421 ~~~~~~~~~~~~~~~~e~~p~~------~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
T TIGR00898 421 KFGITSAFQMVYLYTAELYPTV------VRNLGVGVCSTMARVGSIISPFLVY-LG-EKWLFLPLVLFGGLALLAGILT 491 (505)
T ss_pred HHHHHHHHHHHHHHhcccccHH------HHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHHHhhHHHHHHHHHHHHHHHH
Confidence 3344444466777888888632 3678899999999999999998887 44 4566677776666655554433
No 163
>PRK10429 melibiose:sodium symporter; Provisional
Probab=88.81 E-value=6.1 Score=40.22 Aligned_cols=84 Identities=7% Similarity=0.061 Sum_probs=48.6
Q ss_pred HHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHH------hccchhhHHHHH
Q 017117 58 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVV-YIQ------MEHGWGSAFGAL 130 (377)
Q Consensus 58 ~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~-yi~------~~~g~~~gF~i~ 130 (377)
...+..++.-.+...-.++++|.=++.++ |.+.++|=.+..|+|+++...+.. .++ +..||.....+.
T Consensus 112 ~~~l~~~~~t~~~ip~~al~~~lt~~~~e-----R~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~ 186 (473)
T PRK10429 112 TYILWGMTYTIMDIPFWSLVPTLTLDKRE-----REQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVL 186 (473)
T ss_pred HHHHHHHHHHHHcchHHhhhHHhCCCHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 33344566666777778888877654332 556667656677887666544433 321 123576666666
Q ss_pred HHHHHHHHHHHHhccc
Q 017117 131 AIAMGISNMLFFIGTP 146 (377)
Q Consensus 131 ~i~m~~~l~~f~~g~~ 146 (377)
++.+.+...+-+.+.|
T Consensus 187 ~~~~~~~~~~~~~~~~ 202 (473)
T PRK10429 187 IAFFIVSTIITLRNVH 202 (473)
T ss_pred HHHHHHHHHHHHcCce
Confidence 6666655444444333
No 164
>PRK12307 putative sialic acid transporter; Provisional
Probab=88.77 E-value=4.2 Score=40.24 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=42.4
Q ss_pred cccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHH
Q 017117 68 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 129 (377)
Q Consensus 68 ~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i 129 (377)
+.-+...++..|.++++ ++.+...+.+...++|+.+++.+.+++.++.|+..+..+
T Consensus 337 ~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~ 392 (426)
T PRK12307 337 GVGGLVPKFLYDYFPLE------VRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF 392 (426)
T ss_pred cHhHHHHHHHHHhCcHH------HHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 33455566777777642 357788889999999999999999999999987654333
No 165
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=88.77 E-value=8.4 Score=38.62 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=46.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhccccccc
Q 017117 92 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 150 (377)
Q Consensus 92 ~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~g~~~y~~ 150 (377)
.|..-+++--..|+|-.+|..+-+.+-|++||..-..++++.+++++++.+...++.++
T Consensus 333 ~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 333 ADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45566666666777777776777777888999999999999999999998887776544
No 166
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=88.44 E-value=4 Score=41.13 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchhhHHHHHHHHHHHHHHHHHh
Q 017117 91 HLDRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 91 ~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~---~g~~~gF~i~~i~m~~~l~~f~~ 143 (377)
..........+..++|+++++.+++++.++ .+|..+|.+.++.++++.+.+..
T Consensus 393 ~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 393 FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence 367778888888899999999999988764 34999999999999988877654
No 167
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=87.85 E-value=1 Score=46.52 Aligned_cols=84 Identities=17% Similarity=0.243 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh------ccchhhHH
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAF 127 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~------~~g~~~gF 127 (377)
.+..-=.+.++=.++.=|+.....+.=|++++ +..-+.+||.+.++|+.+|.++...+.+ ..||+|-|
T Consensus 136 ~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~F 209 (495)
T KOG2533|consen 136 GLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLF 209 (495)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeeh
Confidence 34444456667777778999999999998643 5677888999999999999998888743 57999999
Q ss_pred HHHHHHHHHH-HHHHHh
Q 017117 128 GALAIAMGIS-NMLFFI 143 (377)
Q Consensus 128 ~i~~i~m~~~-l~~f~~ 143 (377)
.++++.+++. +++|+.
T Consensus 210 iI~G~i~~~~gi~~f~~ 226 (495)
T KOG2533|consen 210 IIEGVITLVLGIVVFFF 226 (495)
T ss_pred hHHHHHHHHHHheEEEE
Confidence 9999887754 444443
No 168
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=87.55 E-value=11 Score=38.71 Aligned_cols=86 Identities=10% Similarity=0.001 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-----h-------
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-----M------- 119 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~-----~------- 119 (377)
...+++.-.++++|.+ .=+.....+.+.|+++ ++.....++-..-|+|..++..+.+.+- +
T Consensus 128 ~~~lli~r~l~Gigg~-~f~~~~~~vs~wfp~~------~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~ 200 (462)
T PRK15034 128 FGIFIVIALLCGFAGA-NFASSMGNISFFFPKA------KQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGV 200 (462)
T ss_pred HHHHHHHHHHHHHHHH-hHHHHHHHHHHHCCHh------HhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4566666677777744 4466777888999743 2567777776677777766655554432 2
Q ss_pred ------ccchhhHHHHHHHHHHHHHHHHHhc
Q 017117 120 ------EHGWGSAFGALAIAMGISNMLFFIG 144 (377)
Q Consensus 120 ------~~g~~~gF~i~~i~m~~~l~~f~~g 144 (377)
..||+.++.+=.+..+++.+.++..
T Consensus 201 ~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 201 PQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555555555555555554443
No 169
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=87.36 E-value=3.3 Score=42.62 Aligned_cols=92 Identities=9% Similarity=0.153 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----------cc
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM----------EH 121 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~----------~~ 121 (377)
.+.+.....+.++|.+++-|...++..+.-+++ .+...-..+++..++|+.++..+..+... +-
T Consensus 379 ~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~------~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~ 452 (489)
T PRK10207 379 PWFIVLVYLFQSLGELFISALGLAMIAALVPQH------LMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLP 452 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhh
Confidence 445667788899999999999888888876532 36778888999999999999877755521 11
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcccccc
Q 017117 122 GWGSAFGALAIAMGISNMLFFIGTPLYR 149 (377)
Q Consensus 122 g~~~gF~i~~i~m~~~l~~f~~g~~~y~ 149 (377)
.+..-|...++..++..++++...++++
T Consensus 453 ~~~~~f~~~~~~~~~~~v~~~~~~~~~~ 480 (489)
T PRK10207 453 VYTNVFGKIGLVTLGVAVVMALMVPWLN 480 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777766666666655455443
No 170
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=87.34 E-value=0.15 Score=53.31 Aligned_cols=91 Identities=16% Similarity=0.261 Sum_probs=2.3
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh------------
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------------ 119 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~------------ 119 (377)
..+|++|-.+.++|+.-+ .++|-.-.||+-+++ +-.-+..++|..-.+|..+|.++.++.-+
T Consensus 141 ~~~f~~gq~l~GiG~~pl----~tLG~tYiDDnv~~~--~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~ 214 (539)
T PF03137_consen 141 FYVFILGQLLIGIGATPL----YTLGITYIDDNVSKK--NSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDG 214 (539)
T ss_dssp -----------SSS------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhccccCC----ccceeeeeccccccc--cCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccC
Confidence 566777777777776554 455555556554432 23567777888888888777666654421
Q ss_pred ---------ccc-hhhHHHHHHHHHHHHHHHHHhccccc
Q 017117 120 ---------EHG-WGSAFGALAIAMGISNMLFFIGTPLY 148 (377)
Q Consensus 120 ---------~~g-~~~gF~i~~i~m~~~l~~f~~g~~~y 148 (377)
.+| ||+||.++++..++..+-++.--|++
T Consensus 215 ~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l 253 (539)
T PF03137_consen 215 VGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL 253 (539)
T ss_dssp ---------------------------------------
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 144 99999999998887776666544433
No 171
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=87.23 E-value=7.4 Score=38.08 Aligned_cols=80 Identities=14% Similarity=0.007 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i 132 (377)
..+..+..+..+|.|..-|...+...|.++++ +......+....|+|+.+++.+..++.++.++..+..+..+
T Consensus 300 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (394)
T PRK11652 300 WTLLVPAALFFFGAGMLFPLATSGAMEPFPYL-------AGTAGALLGGLQNIGSGLAALLSAMLPQTGQFSLGLLMTLM 372 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence 44666777888899998899999888877521 34556777778899999999999999887777766665555
Q ss_pred HHHHHHH
Q 017117 133 AMGISNM 139 (377)
Q Consensus 133 ~m~~~l~ 139 (377)
..+....
T Consensus 373 ~~~~~~~ 379 (394)
T PRK11652 373 GLLILLC 379 (394)
T ss_pred HHHHHHH
Confidence 4444333
No 172
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=86.22 E-value=2.3 Score=42.37 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=38.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHH
Q 017117 91 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM 134 (377)
Q Consensus 91 ~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g-~~~gF~i~~i~m 134 (377)
++...+.+.+...|+|+.+++.+.+.+.|..| |..+|.++++..
T Consensus 366 ~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 366 ARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 47788999999999999999999999999875 999998877643
No 173
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=86.11 E-value=9.6 Score=36.71 Aligned_cols=75 Identities=21% Similarity=0.346 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNi-Gsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
..++....+.++|.+..-+.......|.+++ ++.+..+.+....+. |++.++ +.+.+.++.+|...|....
T Consensus 301 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~g~~~~~~~~~~~~~g~i~~~-~~~~~~~~~~~~~~~~~~~ 372 (385)
T TIGR00710 301 AMIIGPMMFVGIGNSMISSIAMAYALEDFPH-------VAGTASALFGTLRLVLGAIVGY-LVSLIHGNTAWPMSLSCLV 372 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-------cchHHHHHHHHHHHHHHHHHHH-HHHhccccChHHHHHHHHH
Confidence 3445556677788888888887777776642 134556666655554 555554 4556666666665555544
Q ss_pred HHHH
Q 017117 132 IAMG 135 (377)
Q Consensus 132 i~m~ 135 (377)
....
T Consensus 373 ~~~~ 376 (385)
T TIGR00710 373 LAVV 376 (385)
T ss_pred HHHH
Confidence 4333
No 174
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=85.02 E-value=4.1 Score=39.28 Aligned_cols=59 Identities=12% Similarity=0.044 Sum_probs=44.4
Q ss_pred HHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 017117 59 LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 122 (377)
Q Consensus 59 L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g 122 (377)
..+..+|.|..-|...+...+..++.+ ++...+...+...++|..+++.+.+++.|+.|
T Consensus 292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 292 ALVLGLGQGGAFPLALTLIGLRSRQAA-----QAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHhhhhHhHHHHHHHHHhccCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788888888887777776554321 24566677777788899999999999999876
No 175
>PRK10133 L-fucose transporter; Provisional
Probab=84.32 E-value=5.8 Score=40.05 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHH
Q 017117 56 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM 134 (377)
Q Consensus 56 ~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g-~~~gF~i~~i~m 134 (377)
+.++.++.+|.|.+-|++.+...+.++++.. ..+.... +.. +|+.+.+.+.+++.|.+| -+.+|.++.++.
T Consensus 351 ~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~-----~as~l~~--~~~-~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~ 422 (438)
T PRK10133 351 LIALTLCSAFMSIQYPTIFSLGIKNLGQDTK-----YGSSFIV--MTI-IGGGIVTPVMGFVSDAAGNIPTAELIPALCF 422 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchhhc-----cchhHHh--HHh-ccchHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 4567789999999999999999999876422 2233322 222 466677788999999998 789999988877
Q ss_pred HHHHHHHHhc
Q 017117 135 GISNMLFFIG 144 (377)
Q Consensus 135 ~~~l~~f~~g 144 (377)
+...+.=..+
T Consensus 423 ~~~~~~~~~~ 432 (438)
T PRK10133 423 AVIFIFARFR 432 (438)
T ss_pred HHHHHHHHHh
Confidence 7555543333
No 176
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=84.30 E-value=6.8 Score=44.51 Aligned_cols=79 Identities=8% Similarity=-0.142 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-EHGWGSAFGAL 130 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~-~~g~~~gF~i~ 130 (377)
.+.+++++.++++|.|.+-+...+++.+..+++. +.+.+..+.+..++|..+++.+.+++.+ ..++...|.+.
T Consensus 334 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~ 407 (1140)
T PRK06814 334 GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFI 407 (1140)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 3456677888899999998888898888887543 5677888888889999999888888874 45777776665
Q ss_pred HHHHHH
Q 017117 131 AIAMGI 136 (377)
Q Consensus 131 ~i~m~~ 136 (377)
++..++
T Consensus 408 ~~~~~~ 413 (1140)
T PRK06814 408 ALANLI 413 (1140)
T ss_pred HHHHHH
Confidence 554443
No 177
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=83.87 E-value=5.9 Score=40.39 Aligned_cols=82 Identities=7% Similarity=-0.041 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 017117 56 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 135 (377)
Q Consensus 56 ~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~ 135 (377)
.+.+.+.+++.++..+...+...+.. ++ .+.....+...+-|+|+.+++.+.. .++..+|..+|.+.++.++
T Consensus 352 ~~~~~l~~~~~~~~~~~~~~~~~~~~----~~---~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~ 423 (476)
T PLN00028 352 IVVMILFSIFVQAACGATFGIVPFVS----RR---SLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMII 423 (476)
T ss_pred HHHHHHHHHHHHHhhhhhcccCcccC----hh---hchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHH
Confidence 33444455554444444444443332 22 2455666656666667666655432 2345679999999999999
Q ss_pred HHHHHHHhcc
Q 017117 136 ISNMLFFIGT 145 (377)
Q Consensus 136 ~~l~~f~~g~ 145 (377)
++.++.+..+
T Consensus 424 i~~~~~~~~~ 433 (476)
T PLN00028 424 ACTLPVAFIH 433 (476)
T ss_pred HHHHHHHhee
Confidence 9888877664
No 178
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=83.65 E-value=56 Score=33.48 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...+.+.-.+.+++.++.-.+...+++|.+.+++ |...-++ +.....|+.+++....|+-+ +|++-+.+..
T Consensus 171 ~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~ 241 (521)
T KOG0255|consen 171 YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIIS 241 (521)
T ss_pred HHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 5567777788889999999999999999998543 4555566 77777888888888888887 9999999988
Q ss_pred HHHHHHHHH
Q 017117 132 IAMGISNML 140 (377)
Q Consensus 132 i~m~~~l~~ 140 (377)
+.-++.++.
T Consensus 242 ~~~~~~~~~ 250 (521)
T KOG0255|consen 242 IPSGLFLLL 250 (521)
T ss_pred HHHHHHHHH
Confidence 877766555
No 179
>PRK15075 citrate-proton symporter; Provisional
Probab=82.93 E-value=4.6 Score=40.42 Aligned_cols=61 Identities=10% Similarity=-0.049 Sum_probs=42.1
Q ss_pred HHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhccchh
Q 017117 58 VLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWG 124 (377)
Q Consensus 58 ~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNi-Gsl~a~~~~~yi~~~~g~~ 124 (377)
.+.++.++.|...+...+...|.++++. |...+.+.|-..+. ++.+++.+.+++.|+.|+.
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 337 VELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 3444556667777766778888886432 56677776655554 4667899999999988853
No 180
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=82.74 E-value=11 Score=38.94 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHH--
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA-- 129 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i-- 129 (377)
...+.+.-++.++|.|..= .....+..-|++ + +|.+..+++-.+.++|.++++.+.+++. .+||+.=+-+
T Consensus 115 l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~---k---ER~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~Ln~ 186 (511)
T TIGR00806 115 VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP---S---RYQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTLNI 186 (511)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHHHH
Confidence 4567777788899998876 778888888873 2 3788889999999999999999999954 6788765543
Q ss_pred -HHHHHHHHHH
Q 017117 130 -LAIAMGISNM 139 (377)
Q Consensus 130 -~~i~m~~~l~ 139 (377)
+...+.++++
T Consensus 187 Isl~s~~~a~~ 197 (511)
T TIGR00806 187 ISLVFMTFSVF 197 (511)
T ss_pred HHHHHHHHHHH
Confidence 3444444444
No 181
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=82.33 E-value=56 Score=32.57 Aligned_cols=38 Identities=18% Similarity=0.424 Sum_probs=28.4
Q ss_pred HHHHhhccCchhhHHHHHHHH-HHHHHHHHHHHhhhhhh
Q 017117 304 LEFLYEEAPDAMKSIGSAYAA-LAGGLGCFAASILNSII 341 (377)
Q Consensus 304 ~E~~~~~aP~~m~s~~~gl~~-l~~a~G~~l~~~l~~lv 341 (377)
..+..+.+|++.|+.++|+.. ...++|+.++..+...+
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l 368 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVM 368 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345678999999999999996 55677777766666544
No 182
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=81.78 E-value=7.2 Score=40.53 Aligned_cols=106 Identities=17% Similarity=0.125 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHH-HHHhcccccccchhhhhccC
Q 017117 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYI-TGFGAAGIRPCVSSFGADQF 81 (377)
Q Consensus 3 ~i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~l-ia~G~G~~Kpnv~~~~~dqf 81 (377)
+++.|++++.+|+++-..++. .+.+++...+ .++|.|.+-.-....++.-|
T Consensus 113 v~i~G~~v~~~g~~lssF~~~----------------------------i~~l~lt~gvi~G~G~~~~~~paiviv~~YF 164 (509)
T KOG2504|consen 113 VMIAGGLVAALGLLLSSFATS----------------------------LWQLYLTFGVIGGLGLGLIYLPAVVILGTYF 164 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----------------------------HHHHHHHHHHHhhccchhhhcchhhhhhhHh
Confidence 578899999999877766532 3445555554 67888888777777777666
Q ss_pred CCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHh
Q 017117 82 DERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 82 ~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~ 143 (377)
+++ |..+=.+=-.+-.+|.++=+.+.-++-+++||+.++.+=+..++-.++.-..
T Consensus 165 ~kk-------R~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~ 219 (509)
T KOG2504|consen 165 EKK-------RALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGAL 219 (509)
T ss_pred HHH-------HHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 632 2222222334555666666777888899999999999887777444433333
No 183
>PRK11043 putative transporter; Provisional
Probab=81.16 E-value=23 Score=34.71 Aligned_cols=69 Identities=12% Similarity=-0.039 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHH
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGA 129 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i 129 (377)
.+.++..+++++.|..-|.+.+...++.++ ++.+...++....+.++..++.+.+.+-++.....++.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 366 (401)
T PRK11043 298 PLLIPFCVMAAANGAIYPIVVAQALRPFPQ-------ATGKAAALQNTLQLGLCFLASLLVSALISTPLLTTGSVM 366 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-------cChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHHHH
Confidence 445566778888888888887777777642 145667777766677777888888888776555555444
No 184
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=80.54 E-value=8.1 Score=37.35 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=40.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHHHHHH
Q 017117 91 HLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGISNMLFF 142 (377)
Q Consensus 91 ~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g---~~~gF~i~~i~m~~~l~~f~ 142 (377)
+...+|..-|-.-|+|-.+.+++++.|.|+-| |--+|.+....|.+-.+..+
T Consensus 385 qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil 439 (459)
T KOG4686|consen 385 QLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGIL 439 (459)
T ss_pred HhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999988644 77777777777765554433
No 185
>PRK11462 putative transporter; Provisional
Probab=80.05 E-value=17 Score=36.97 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhccch
Q 017117 55 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRF-FNFFYLSVTVGAIVAFTLVVYIQMEHGW 123 (377)
Q Consensus 55 ~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~-F~~fY~~iNiGsl~a~~~~~yi~~~~g~ 123 (377)
+++.+.+..+|.|+.-+...++.+|--|.++-+..++++.. |+.+=++.++|..++..+.+++-+..||
T Consensus 321 ~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 321 MFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34445556667777777777888888876543333334444 6777788889988888888777655555
No 186
>PF14007 YtpI: YtpI-like protein
Probab=78.51 E-value=8.1 Score=30.25 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=48.4
Q ss_pred hccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhcccccccCCC
Q 017117 78 ADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRLP 153 (377)
Q Consensus 78 ~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~g~~~y~~~~p 153 (377)
-+++...||.||. ..-==+.|.+|.++.....--.-- .+=...+.++++.+++|+...+.|.|.|++-.|
T Consensus 17 ~k~~Rs~~p~~k~-----~~~aka~ialG~fl~~fgiNQ~~~-~~st~~~iV~~ifl~lG~~n~~~G~r~y~hy~p 86 (89)
T PF14007_consen 17 IKYFRSKDPMEKK-----WYSAKANIALGIFLILFGINQMFL-FGSTVRLIVGAIFLVLGLFNLFAGIRAYRHYRP 86 (89)
T ss_pred HHHhhcCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh
Confidence 4667777775442 211234678888876554433222 344588999999999999999999999987655
No 187
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=77.32 E-value=31 Score=33.98 Aligned_cols=81 Identities=6% Similarity=0.031 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q 017117 55 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAM 134 (377)
Q Consensus 55 ~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m 134 (377)
..+.+.+.++|.|.+-+...+..-+. .+++ ..+.+.+....+..|+|..++..+...+ +.+|=+..+.+.+++.
T Consensus 296 ~~~~~~~~G~~~g~~~~~~~~~~q~~-~~~~----~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 369 (393)
T PRK11195 296 AYPLLILIGALGGFFVVPMNALLQHR-GHVL----VGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGL 369 (393)
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHHhh-Cccc----ccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHH
Confidence 44455577788888888888776442 2111 1256788888999999999998777755 5677666666666665
Q ss_pred HHHHHHH
Q 017117 135 GISNMLF 141 (377)
Q Consensus 135 ~~~l~~f 141 (377)
+++..+-
T Consensus 370 ~~~~~~~ 376 (393)
T PRK11195 370 LVALAMA 376 (393)
T ss_pred HHHHHHH
Confidence 5554443
No 188
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=76.47 E-value=23 Score=34.85 Aligned_cols=65 Identities=9% Similarity=-0.005 Sum_probs=48.1
Q ss_pred cccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Q 017117 68 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 140 (377)
Q Consensus 68 ~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~ 140 (377)
+.-|...++.+|.|+++ .|.+...+.+..-|+|+.+++.+.+.+.. |.+..|.+-++..+++.+.
T Consensus 296 ~~~~~~~~~~~~~~p~~------~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~ 360 (368)
T TIGR00903 296 PAYAIIMDWIGKFCDKE------LHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAI 360 (368)
T ss_pred hhHHHHHHHHHHhcchh------hcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHH
Confidence 33345667888999743 37899999999999999999888887774 6666666666666655554
No 189
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=76.43 E-value=29 Score=34.60 Aligned_cols=66 Identities=8% Similarity=-0.063 Sum_probs=42.6
Q ss_pred ccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Q 017117 71 PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 142 (377)
Q Consensus 71 pnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNi-Gsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~ 142 (377)
+...+...|.|+++ .|..++.+-|..-|+ ++..++.+..++.+...|...|...++..+++.+..+
T Consensus 355 ~~~~~~~~e~fp~~------~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 355 SISGILKAEMFPAQ------VRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred HHHHHHHHHHCCCC------ccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 45567788999853 267888888877665 2334777777775443366666666666666655543
No 190
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=76.15 E-value=4.4 Score=42.07 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALA 131 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g-~~~gF~i~~ 131 (377)
..+..--.+.++..|.+-.+.+....|..+.++ ..+.|.+..+...+++++++-+.+++.|..| |...|-.++
T Consensus 389 ~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g 462 (509)
T KOG2504|consen 389 VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCG 462 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcC
Confidence 344444555666677777777777778877533 6899999999999999999999999999888 999999999
Q ss_pred HHHHHHHHHHHhcc
Q 017117 132 IAMGISNMLFFIGT 145 (377)
Q Consensus 132 i~m~~~l~~f~~g~ 145 (377)
+.++++.++++.-+
T Consensus 463 ~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 463 LCFLLSAVLLLILR 476 (509)
T ss_pred hHHHHHHHHHHHhH
Confidence 99999997776655
No 191
>TIGR00895 2A0115 benzoate transport.
Probab=75.29 E-value=9 Score=36.83 Aligned_cols=59 Identities=19% Similarity=0.099 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYI 117 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi 117 (377)
..+++...+..++.|+.-|...+...|.++++ .|...+.+++...++|..+++.+.+++
T Consensus 339 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 339 TLLLLLGAIAGFFVNGGQSGLYALMALFYPTA------IRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHH------HHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 34556677788888888899999999998642 367889999999999999999888765
No 192
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=74.49 E-value=27 Score=35.91 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCCC
Q 017117 4 FFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 83 (377)
Q Consensus 4 i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~ 83 (377)
..++.++.++|.+++.+.. + .+..++++...+..+|.|..-+-.-++.+|--|-
T Consensus 305 ~~~~~~~~~i~~~~~~f~~-------~-------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDy 358 (467)
T COG2211 305 FLIGLLLLAVGYLLLYFTP-------A-------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDY 358 (467)
T ss_pred HHHHHHHHHHHHHHHHhhc-------C-------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhH
Confidence 4566777777777777642 1 1467788888889999999999999999999886
Q ss_pred CChhhhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 017117 84 RSKDYKTHL-DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGW 123 (377)
Q Consensus 84 ~~~~~~~~~-~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~ 123 (377)
++-+...++ .-.|+.+=+..=+|..++..+.+++-...||
T Consensus 359 ge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 359 GEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 553322223 4566777777788888887777777555444
No 193
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=73.75 E-value=37 Score=33.98 Aligned_cols=81 Identities=11% Similarity=0.182 Sum_probs=54.0
Q ss_pred HHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc------hhhHHHHHHHHH
Q 017117 61 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG------WGSAFGALAIAM 134 (377)
Q Consensus 61 lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g------~~~gF~i~~i~m 134 (377)
+=++--|.+=.....++.++.+++.. .+-++.|+..+ ..+|..++.++.+++-|++| |...|.++++..
T Consensus 310 lhG~tf~~~~~a~~~yi~~~~p~~~~---at~Q~l~~~~~--~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~ 384 (400)
T PF03825_consen 310 LHGLTFGLFHAASVRYIDRIAPPELR---ATAQGLYSALS--FGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMA 384 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCccch---HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 34555556666666677777764431 22344444433 35788889999999998765 667788888888
Q ss_pred HHHHHHHHhccc
Q 017117 135 GISNMLFFIGTP 146 (377)
Q Consensus 135 ~~~l~~f~~g~~ 146 (377)
++..++|+...|
T Consensus 385 ~~~~~~f~~~fk 396 (400)
T PF03825_consen 385 LVILVLFVILFK 396 (400)
T ss_pred HHHHHHHHhhcc
Confidence 888888877533
No 194
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=73.17 E-value=14 Score=27.95 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhcccccccCC
Q 017117 94 RFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRHRL 152 (377)
Q Consensus 94 s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~g~~~y~~~~ 152 (377)
..-.++...+-+++++| .+++|+.++ ++..+.+-+++.++++++.+=-.+.|++.|
T Consensus 8 ~ae~l~~~il~~~~iis-fi~Gy~~q~--~~~~~~~~~~g~~~~~lv~vP~Wp~y~r~p 63 (76)
T PF06645_consen 8 LAEKLMQYILIISAIIS-FIVGYITQS--FSYTFYIYGAGVVLTLLVVVPPWPFYNRHP 63 (76)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHhheeCCcHhhcCCc
Confidence 44466777888888888 678888874 467888888888888888887777776544
No 195
>PTZ00207 hypothetical protein; Provisional
Probab=72.97 E-value=24 Score=37.45 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhc------------
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVA-FTLVVYIQME------------ 120 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a-~~~~~yi~~~------------ 120 (377)
.+|++-.++++++|..=+...+...+.|. +|. ..-||.-+.+.=+|+++= ..+.+++-|+
T Consensus 454 ~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~------g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G 526 (591)
T PTZ00207 454 ALPLPYFIAAFANGFMAATIALVTRTIFA-KDP------AKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTE 526 (591)
T ss_pred HhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cch------HHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCC
Confidence 58999999999999999999999999999 554 577888899999999653 5666776432
Q ss_pred -cchhhHHHHHHHHHHHHHHHH
Q 017117 121 -HGWGSAFGALAIAMGISNMLF 141 (377)
Q Consensus 121 -~g~~~gF~i~~i~m~~~l~~f 141 (377)
.+++..|.+.++.-++|.++=
T Consensus 527 ~~C~~~~~~v~~~~~~~g~~~s 548 (591)
T PTZ00207 527 RVCVVMPLAFLLGLSFLAFITS 548 (591)
T ss_pred ceeeHhHHHHHHHHHHHHHHHH
Confidence 469999987777666666543
No 196
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=71.59 E-value=14 Score=37.96 Aligned_cols=89 Identities=13% Similarity=0.091 Sum_probs=63.7
Q ss_pred HHHHHhccccc--------ccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 60 YITGFGAAGIR--------PCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 60 ~lia~G~G~~K--------pnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
.++.-|.|++- .-++++.+..|-+.+.+....-+..=..-+.+-|+|.+++.+.-+|+.|.+|=.-.|+...
T Consensus 42 ~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~l 121 (538)
T KOG0252|consen 42 AIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKEL 121 (538)
T ss_pred HHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHH
Confidence 34455555542 2355666777765553222223344456688999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccc
Q 017117 132 IAMGISNMLFFIGTPLYRH 150 (377)
Q Consensus 132 i~m~~~l~~f~~g~~~y~~ 150 (377)
+.|+++.+ .++.+....
T Consensus 122 iImIi~t~--~~~~s~~~~ 138 (538)
T KOG0252|consen 122 IIMIICSA--LSGLSVGTT 138 (538)
T ss_pred HHHHHHHH--HhccCCCCC
Confidence 99999998 666666544
No 197
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=71.42 E-value=16 Score=37.40 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017117 55 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME 120 (377)
Q Consensus 55 ~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~ 120 (377)
.+..+.+.++|.|..-+.......+..++++ +......+.+.-|+|..++..+.+.+-++
T Consensus 354 ~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 354 AWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778889988887777776666554322 56777888999999999998888877653
No 198
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=71.18 E-value=11 Score=37.80 Aligned_cols=64 Identities=14% Similarity=0.207 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG 122 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g 122 (377)
..++..+.+.++|.|..-+.......+.++++ ++......+.+..++|+.+++.+.+.+.++..
T Consensus 349 ~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~~ 412 (485)
T TIGR00711 349 LAIALPQFIRGFGMGCFFMPLTTIALSGLPPH------KIARGSSLSNFTRQLGGSIGTALITTILTNRT 412 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677888888887776666666665421 36788888899999999999888888776543
No 199
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.88 E-value=9.8 Score=38.33 Aligned_cols=96 Identities=11% Similarity=0.044 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i 132 (377)
.-+.+-...+++|.|.....+.+..+...|..+..+-+--.+.+.++=.+..+|.++||++.+.+.++.||.|.=.+-++
T Consensus 362 ~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~ 441 (464)
T KOG3764|consen 362 AQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGI 441 (464)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHH
Confidence 34666666778888888888888888888865543222235667778888899999999999999999998876555444
Q ss_pred HHHHHHHHHHhccccc
Q 017117 133 AMGISNMLFFIGTPLY 148 (377)
Q Consensus 133 ~m~~~l~~f~~g~~~y 148 (377)
.-++..-++...+..|
T Consensus 442 ~n~iyapvl~ll~~v~ 457 (464)
T KOG3764|consen 442 LNLIYAPVLLLLRIVY 457 (464)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4444444444444444
No 200
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=70.68 E-value=1.2e+02 Score=30.56 Aligned_cols=50 Identities=14% Similarity=-0.018 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHh
Q 017117 93 DRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 93 ~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~ 143 (377)
.-=|.-==+.-.+|-.++..+++++-+ .+-+..|.++.++..+.+++.+.
T Consensus 137 ~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~ 186 (412)
T PF01306_consen 137 GFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLL 186 (412)
T ss_dssp SS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHH
Confidence 333444556778888888888888875 56667777766554444444333
No 201
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=69.83 E-value=67 Score=32.35 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCC
Q 017117 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (377)
Q Consensus 3 ~i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~ 82 (377)
+..+|+.+..++..++.+++... +.+.|..++.++.+|+|.+--...+..-|.=.
T Consensus 277 ~a~~G~~~~~~~f~lii~a~~~~-------------------------~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~ 331 (403)
T PF03209_consen 277 TAALGCLLGALAFALIILAGPLG-------------------------SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTS 331 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-------------------------cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Confidence 34578888888888888877521 24678999999999999987766666666665
Q ss_pred CCChhhhhhhhhHHHHHHHH----HHHHHHHHHHHHHHH----H--hccchhhHHHHHHHHHHHHHHHHH
Q 017117 83 ERSKDYKTHLDRFFNFFYLS----VTVGAIVAFTLVVYI----Q--MEHGWGSAFGALAIAMGISNMLFF 142 (377)
Q Consensus 83 ~~~~~~~~~~~s~F~~fY~~----iNiGsl~a~~~~~yi----~--~~~g~~~gF~i~~i~m~~~l~~f~ 142 (377)
+++. .-+...|=.+ ..+|.+++..+.-.. . ...+|...|.+-++.|++++++..
T Consensus 332 ~~~a------G~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 332 AGRA------GLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred Ccch------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 1222222222 233333333222211 2 235799999999999998887653
No 202
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=68.79 E-value=23 Score=35.32 Aligned_cols=74 Identities=8% Similarity=0.035 Sum_probs=53.0
Q ss_pred HHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHHH
Q 017117 57 TVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH------GWGSAFGAL 130 (377)
Q Consensus 57 ~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~------g~~~gF~i~ 130 (377)
..+.++.+..+++=|.+.+.+-+..+++. ...-...-+++ +|..+.|.+.+++.|++ |++.+|.+|
T Consensus 326 ~~l~~~glf~s~~fp~i~sl~~~~~g~~~-------~~~s~~l~~~~-~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~ 397 (410)
T TIGR00885 326 YCLTLCSAFMSLMFPTIYGIALKGLGQDT-------KYGAAGLVMAI-IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP 397 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHHHHHH-hccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence 34444545555545999999999997543 22333445566 99999999999999965 599999999
Q ss_pred HHHHHHHH
Q 017117 131 AIAMGISN 138 (377)
Q Consensus 131 ~i~m~~~l 138 (377)
.+++..-+
T Consensus 398 ~~~~~~~~ 405 (410)
T TIGR00885 398 LLCFAVIF 405 (410)
T ss_pred HHHHHHHH
Confidence 99887543
No 203
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=68.38 E-value=59 Score=32.85 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=62.0
Q ss_pred HHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc---hhhHHHHHHHHHHH
Q 017117 60 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG---WGSAFGALAIAMGI 136 (377)
Q Consensus 60 ~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g---~~~gF~i~~i~m~~ 136 (377)
.++.+|.|-|- .-.+....-|++++ +.....++= .-|+|..+...+.|.+....| |+..-.+..+.+++
T Consensus 113 ll~G~~GasFa-v~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v 184 (417)
T COG2223 113 LLLGLAGASFA-VGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAI 184 (417)
T ss_pred HHHhcccceeh-cccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34555555443 33346677777543 455666666 889999999999999999999 99999999999999
Q ss_pred HHHHHHhccccccc
Q 017117 137 SNMLFFIGTPLYRH 150 (377)
Q Consensus 137 ~l~~f~~g~~~y~~ 150 (377)
+.+.++.+.+.-..
T Consensus 185 ~~v~~~~~~~d~p~ 198 (417)
T COG2223 185 AAVLAWLGMNDVPE 198 (417)
T ss_pred HHHHHHHHhCCChh
Confidence 88888887765433
No 204
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=67.51 E-value=44 Score=34.37 Aligned_cols=95 Identities=14% Similarity=0.015 Sum_probs=68.2
Q ss_pred hhHHHHHHHHHHHHHhcc---cccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH
Q 017117 50 WQMLYLYTVLYITGFGAA---GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSA 126 (377)
Q Consensus 50 ~~~~~~~~~L~lia~G~G---~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~g 126 (377)
.....+...+.....|.. +.-.++..+.-+.....+.+... ..+-++|+=-..++|++++.++.+.+.|.+|....
T Consensus 43 ~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~-~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~ 121 (513)
T KOG0254|consen 43 VILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGE-YSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT 121 (513)
T ss_pred hHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 445667777777888873 45555555555554433332110 01456899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 017117 127 FGALAIAMGISNMLFFIGT 145 (377)
Q Consensus 127 F~i~~i~m~~~l~~f~~g~ 145 (377)
+.++.+...++.++....+
T Consensus 122 l~~~~~~~~iG~ii~~~a~ 140 (513)
T KOG0254|consen 122 LLLAVVLFLIGAIIIALAP 140 (513)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999888887766543
No 205
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=65.74 E-value=27 Score=35.99 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=31.3
Q ss_pred hhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017117 75 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ 118 (377)
Q Consensus 75 ~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~ 118 (377)
++..|.++.++ -.++|..+..+-|+|.++|+.++.++.
T Consensus 152 ~fandi~t~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 152 GFANQITTIDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677776443 469999999999999999999988876
No 206
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=62.99 E-value=21 Score=36.70 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=47.9
Q ss_pred hhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Q 017117 75 SFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFF 142 (377)
Q Consensus 75 ~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~ 142 (377)
..+.++|++ +. ++.+++.-|...+|+.+++..+..+.+-++.||..+-.+.-+.+.+..+.|+
T Consensus 289 ~~v~~~~p~--~~---~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~lit~~~Ff 351 (472)
T TIGR00769 289 SKLKAQYPS--PN---EYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLLTGVAFF 351 (472)
T ss_pred HHHHHHCCC--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 556777753 22 3689999999999999987877779999999999888777666666444443
No 207
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=59.95 E-value=1.4e+02 Score=28.95 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q 017117 102 SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISN 138 (377)
Q Consensus 102 ~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l 138 (377)
..+++..+++.+.+++.++.|+...+.+.+.......
T Consensus 331 ~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 367 (392)
T PRK10473 331 TLGIAQVCGSSLWIWLAAVLGISAWNMLIGILIACSI 367 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 3456777777778888888888765555554443333
No 208
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=54.87 E-value=93 Score=32.26 Aligned_cols=34 Identities=6% Similarity=-0.027 Sum_probs=29.7
Q ss_pred ccCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 017117 310 EAPDAMKSIGSAYAALAGGLGCFAASILNSIIKS 343 (377)
Q Consensus 310 ~aP~~m~s~~~gl~~l~~a~G~~l~~~l~~lv~~ 343 (377)
--.++-++..+|+|+...++|+.+++.+..-+.+
T Consensus 162 wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~ 195 (495)
T KOG2533|consen 162 WYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK 195 (495)
T ss_pred hcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence 3367889999999999999999999999998654
No 209
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=54.41 E-value=61 Score=25.02 Aligned_cols=9 Identities=0% Similarity=-0.193 Sum_probs=6.6
Q ss_pred CchhHHHHH
Q 017117 363 DTSTGLSRS 371 (377)
Q Consensus 363 ~~ld~~y~~ 371 (377)
.=.|+|||+
T Consensus 68 ~VaDRYwWv 76 (89)
T PF10762_consen 68 KVADRYWWV 76 (89)
T ss_pred hhhhhHHHH
Confidence 456888886
No 210
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=54.19 E-value=31 Score=34.61 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=30.3
Q ss_pred HHHHHHhhccCchhhHHHHHHHHHH-HHHHHHHHHhhhhh
Q 017117 302 GLLEFLYEEAPDAMKSIGSAYAALA-GGLGCFAASILNSI 340 (377)
Q Consensus 302 ~~~E~~~~~aP~~m~s~~~gl~~l~-~a~G~~l~~~l~~l 340 (377)
+...+..+.+|+++|+.++|++... .++|..+++.+...
T Consensus 321 a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~ 360 (400)
T PF03825_consen 321 ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGW 360 (400)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 6677889999999999999998754 56777776665543
No 211
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=53.40 E-value=1.6e+02 Score=29.08 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 017117 54 YLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133 (377)
Q Consensus 54 ~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~ 133 (377)
.+++++.+..+|.|..-|++.+..-.|.+..+ .+.-..+......+..++..+.+|+.++ +=.++|.+..+.
T Consensus 314 ~~~~~~~l~~~G~~~~~p~~~~~al~~~~~~~-------G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~ 385 (413)
T PRK15403 314 WSVLGTSLYAFGIGLIFPTLFRFTLFSNNLPK-------GTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVV 385 (413)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhccCCCCC-------cHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHH
Confidence 35678888899999999999865444444322 2222333444445555666667777654 334555544444
Q ss_pred HHHH
Q 017117 134 MGIS 137 (377)
Q Consensus 134 m~~~ 137 (377)
..+.
T Consensus 386 ~~~~ 389 (413)
T PRK15403 386 AGVI 389 (413)
T ss_pred HHHH
Confidence 3333
No 212
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=52.74 E-value=62 Score=30.34 Aligned_cols=77 Identities=13% Similarity=0.329 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 017117 56 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMG 135 (377)
Q Consensus 56 ~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~ 135 (377)
+++..+..++.+.+-|..+....++++-++. -.++......++..++....+++.|++|-+..+.++.+.+.
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--------~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~ 73 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPS--------QIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFA 73 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSH--------CHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhh
Confidence 3455566667667667666566777764332 24555556666777777888999999999988888888888
Q ss_pred HHHHH
Q 017117 136 ISNML 140 (377)
Q Consensus 136 ~~l~~ 140 (377)
++..+
T Consensus 74 ~~~~~ 78 (352)
T PF07690_consen 74 LGSLL 78 (352)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 88333
No 213
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=51.79 E-value=5.9 Score=40.45 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=35.5
Q ss_pred HHhhccCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Q 017117 306 FLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVT 345 (377)
Q Consensus 306 ~~~~~aP~~m~s~~~gl~~l~~a~G~~l~~~l~~lv~~~t 345 (377)
+..+..|+..||.++++|+++.-+|+.+|....+.+...+
T Consensus 145 ~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~ 184 (493)
T KOG1330|consen 145 LIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT 184 (493)
T ss_pred HhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence 4678899999999999999999999999988888887655
No 214
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=51.22 E-value=72 Score=24.94 Aligned_cols=37 Identities=11% Similarity=0.209 Sum_probs=31.3
Q ss_pred HHhhccCchhhHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 017117 306 FLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 342 (377)
Q Consensus 306 ~~~~~aP~~m~s~~~gl~~l~~a~G~~l~~~l~~lv~ 342 (377)
+..+..|++.|+..++++.....+|..++..+.....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 75 LIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred HHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 4568889999999999999999999998887776653
No 215
>PRK10692 hypothetical protein; Provisional
Probab=50.19 E-value=83 Score=24.44 Aligned_cols=46 Identities=13% Similarity=-0.029 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHH---HHHHHHhhccCchhhHHHHHHHHHHHHHHHHH
Q 017117 288 GIGLAVSILSVIWA---GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFA 333 (377)
Q Consensus 288 ~iG~~l~~la~~~a---~~~E~~~~~aP~~m~s~~~gl~~l~~a~G~~l 333 (377)
.+|-++++++|++. .++.++....+-++-....-.-+++..+|.++
T Consensus 8 ~~GN~lMglGmv~Mv~gigysi~~~i~~L~Lp~~~~~gal~~IFiGAll 56 (92)
T PRK10692 8 LLGNVLMGLGLVVMVVGVGYSILNQLPQLNLPQFFAHGALLSIFVGALL 56 (92)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHhhHHHHHHHHHHH
Confidence 34555555555443 33444444443344444444444444444433
No 216
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=49.33 E-value=3.2e+02 Score=28.29 Aligned_cols=86 Identities=12% Similarity=0.057 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHH-HhccchhhHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAF-TLVVYI-QMEHGWGSAFGA 129 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~-~~~~yi-~~~~g~~~gF~i 129 (377)
.-++.+|=.++++..|..-..++-+..|.= |++ .|...=+.-=+++++|.+++. +..+.+ +++-.|++.+++
T Consensus 116 ~e~li~GR~i~Gl~~gl~~~~~pmyl~E~s----P~~--~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~ 189 (485)
T KOG0569|consen 116 FEMLILGRLIVGLACGLSTGLVPMYLTEIS----PKN--LRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAF 189 (485)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhcC----hhh--hccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHH
Confidence 346788888999999988877777777543 332 234444445678889999884 334555 456679999999
Q ss_pred HHHHHHHHHHHHHh
Q 017117 130 LAIAMGISNMLFFI 143 (377)
Q Consensus 130 ~~i~m~~~l~~f~~ 143 (377)
+.+-.++.++....
T Consensus 190 ~~i~~~~~l~~l~~ 203 (485)
T KOG0569|consen 190 PLIPALLQLALLPF 203 (485)
T ss_pred HHHHHHHHHHHHhc
Confidence 99987777766543
No 217
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=49.06 E-value=94 Score=31.57 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=65.6
Q ss_pred HHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHH
Q 017117 60 YITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME-HGWGSAFGALAIAMGISN 138 (377)
Q Consensus 60 ~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~-~g~~~gF~i~~i~m~~~l 138 (377)
.++++-.|+..+..=+..++..+++++ ..+|..|=..--..+++++...+.+-+. ..-+.|+..-.+.+.+++
T Consensus 349 ll~g~s~G~~qA~SRSy~~~lvp~~k~------~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl 422 (438)
T COG2270 349 LLVGTSLGGAQASSRSYLARLVPKGKE------GRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL 422 (438)
T ss_pred HHHHHhcchHHHHHHHHHHHhCCCccc------cceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH
Confidence 568888899999999999999987654 6899999999999999999988877654 457888888888888888
Q ss_pred HHHHhc
Q 017117 139 MLFFIG 144 (377)
Q Consensus 139 ~~f~~g 144 (377)
++++.-
T Consensus 423 ~~L~~v 428 (438)
T COG2270 423 LLLLRV 428 (438)
T ss_pred hhEEee
Confidence 877643
No 218
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=46.66 E-value=94 Score=27.46 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHh--ccchhhHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQM--EHGWGSAFGA 129 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~-~iNiGsl~a~~~~~yi~~--~~g~~~gF~i 129 (377)
..+.+.-.+.+++.|..-|...+...|.+++ . ..+...+.++.. ..++|..+++.+..++.+ ..+|+..|.+
T Consensus 95 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (338)
T COG0477 95 ALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLL 169 (338)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 3444444557888888999999999999886 2 235666777777 577777777766555554 3678886666
Q ss_pred HHHHHHH
Q 017117 130 LAIAMGI 136 (377)
Q Consensus 130 ~~i~m~~ 136 (377)
..+....
T Consensus 170 ~~~~~~~ 176 (338)
T COG0477 170 AALLGLL 176 (338)
T ss_pred HHHHHHH
Confidence 6554443
No 219
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=45.54 E-value=68 Score=33.22 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=54.0
Q ss_pred HHHHHHHHHhccc----ccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 56 YTVLYITGFGAAG----IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 56 ~~~L~lia~G~G~----~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...|.++.+..|. +.-.-...+.++|++.+ ...++++-|....|+-+++-.++.+.+-++.||..+-.+.=
T Consensus 282 L~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~-----~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitP 356 (491)
T PF03219_consen 282 LLCIALLVIAYGISINLVEVVWKSQLKQLYPDPN-----DYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITP 356 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhH
Confidence 3344554444443 23333345567776543 26899999999999999888888899999999998877754
Q ss_pred HHHHHHHHHH
Q 017117 132 IAMGISNMLF 141 (377)
Q Consensus 132 i~m~~~l~~f 141 (377)
+.+++..+.|
T Consensus 357 iv~lit~~~F 366 (491)
T PF03219_consen 357 IVILITGLLF 366 (491)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 220
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=43.24 E-value=15 Score=36.06 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017117 92 LDRFFNFFYLSVTVGAIVAFTLVVYIQMEH 121 (377)
Q Consensus 92 ~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~ 121 (377)
.+..|.+.|...++|.+++. ++-+.+.+.
T Consensus 97 ~~~~~~~~f~i~~~~~~~~~-~~f~~~~~~ 125 (372)
T PF00854_consen 97 QNYGWFLGFGIPAIGMLLAL-IVFLSGRKR 125 (372)
T ss_dssp HCS-HHHHHHHHHHHHHHHH-HHHHCCCCT
T ss_pred cccchhhhhhHHHHHHHHHH-HHHHhCCcC
Confidence 35788999999999999885 345555443
No 221
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=42.69 E-value=3.1e+02 Score=26.14 Aligned_cols=81 Identities=14% Similarity=0.016 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 017117 55 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYL-SVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133 (377)
Q Consensus 55 ~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~-~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~ 133 (377)
+.++..+...+.+..-++......|++++. +.+..+.+.. ...+|+.++..+. ...+. ++...+.+.++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~~~~~~~~~~~~~g~~~g~~~~-~~~~~-~~~~~~~~~~~~ 360 (377)
T PRK11102 290 LVVGVAAFVGCVSMISSNAMAVILDEFPHM-------AGTASSLAGTLRFGIGAIVGALLS-LAPFT-SAWPMVWSMAFC 360 (377)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhcccccc-------chHHHHHHHHHHHHHHHHHHHHHH-hccCC-ChHHHHHHHHHH
Confidence 334444455555555566555555555421 2333333222 1235666665443 22222 333334444555
Q ss_pred HHHHHHHHHhc
Q 017117 134 MGISNMLFFIG 144 (377)
Q Consensus 134 m~~~l~~f~~g 144 (377)
.+++++.++..
T Consensus 361 ~~~~~~~~~~~ 371 (377)
T PRK11102 361 SILSILFYLYA 371 (377)
T ss_pred HHHHHHHHHHh
Confidence 55555555443
No 222
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=40.31 E-value=38 Score=34.78 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc---cchhhHHHHHHHHHHHHHHHHHhc
Q 017117 93 DRFFNFFYLSVTVGAIVAFTLVVYIQME---HGWGSAFGALAIAMGISNMLFFIG 144 (377)
Q Consensus 93 ~s~F~~fY~~iNiGsl~a~~~~~yi~~~---~g~~~gF~i~~i~m~~~l~~f~~g 144 (377)
.-....--+..++..+++|.+++++-++ -.|+..|.+.++.++++.++|.+-
T Consensus 392 ~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 392 GFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 4555555667777888888888777633 379999999999999999988764
No 223
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=37.88 E-value=4.7e+02 Score=26.95 Aligned_cols=79 Identities=10% Similarity=0.121 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh-------ccchhhHHH
Q 017117 56 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM-------EHGWGSAFG 128 (377)
Q Consensus 56 ~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~-------~~g~~~gF~ 128 (377)
++-..+..++--.+.---.++.++.=+ |++| |.+..+|-.++-|+|.++...+.+.+.. ..||...=.
T Consensus 116 ~vtY~l~~l~YT~vniPy~al~~~iT~--d~~E---R~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~ 190 (467)
T COG2211 116 LVTYMLLGLGYTLVNIPYGALGPEITQ--DPQE---RASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTAL 190 (467)
T ss_pred HHHHHHHHHHHHheeCchhhcchhhcC--CHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 333444445555555445556666544 3543 6788899999999998888777655533 235555544
Q ss_pred HHHHHHHHHHH
Q 017117 129 ALAIAMGISNM 139 (377)
Q Consensus 129 i~~i~m~~~l~ 139 (377)
+-++...++++
T Consensus 191 ~~~vi~~i~~l 201 (467)
T COG2211 191 VLGVIGVILLL 201 (467)
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 224
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.52 E-value=35 Score=33.45 Aligned_cols=55 Identities=24% Similarity=0.259 Sum_probs=36.5
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 017117 279 RGASQLQRVGIGLAVSILSVIWAGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 341 (377)
Q Consensus 279 ~~~s~l~ri~iG~~l~~la~~~a~~~E~~~~~aP~~m~s~~~gl~~l~~a~G~~l~~~l~~lv 341 (377)
.+|+|+..+.+|.++..+.+++ ..+-+=|.+|| .|+||++.+.|+++++.++-++
T Consensus 183 yep~~~~~~vl~~~fvl~tlai-----vLFPLWP~~mR---~gvyY~sig~~gfl~~IlvLaI 237 (372)
T KOG2927|consen 183 YEPRPLMWQVLGVLFVLVTLAI-----VLFPLWPRRMR---QGVYYLSIGAGGFLAFILVLAI 237 (372)
T ss_pred ccCCchhHHHHHHHHHHHHHHH-----HhcccCcHHHh---cceeeeecchhHHHHHHHHHHH
Confidence 3567777777777664333221 24566688777 6889999988888887665533
No 225
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.43 E-value=1e+02 Score=24.38 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhccccccc
Q 017117 97 NFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFIGTPLYRH 150 (377)
Q Consensus 97 ~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~g~~~y~~ 150 (377)
-|+-..+.+|+++| .+.++.++..+| ..|.+ +++.++.+++-+--.++|++
T Consensus 26 r~~q~ilti~aiVg-~i~Gf~~Qqls~-tvy~v-g~~~v~t~li~LPpwP~y~r 76 (101)
T KOG4112|consen 26 RFQQLILTIGAIVG-FIYGFAQQQLSV-TVYIV-GAGFVFTLLITLPPWPWYRR 76 (101)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHH-HHHHHHHHHhcCCCchhhhc
Confidence 45577899999988 567888887777 33433 33444555555555666765
No 226
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=35.45 E-value=4.5e+02 Score=26.02 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHhccch--hhHH
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFY-LSVTVGAIVAFTLVVYIQMEHGW--GSAF 127 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY-~~iNiGsl~a~~~~~yi~~~~g~--~~gF 127 (377)
....+++|=++-+++|-.+-+.--+=...+.++.+-++ +....-|+.-- +...+-+..+..+.-++.+..|. ...|
T Consensus 120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~-~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF 198 (354)
T PF05631_consen 120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ-EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPF 198 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchH
Confidence 45678888888888888777666664444444443211 12344444333 33334556666666677777665 8889
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 017117 128 GALAIAMGISNMLFFIGT 145 (377)
Q Consensus 128 ~i~~i~m~~~l~~f~~g~ 145 (377)
..+.+..+++.++-....
T Consensus 199 ~~a~~~l~~~~~~I~~~W 216 (354)
T PF05631_consen 199 DAAIVLLAVAAVLILKTW 216 (354)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999998888777654433
No 227
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=33.47 E-value=5.4e+02 Score=26.28 Aligned_cols=42 Identities=24% Similarity=0.348 Sum_probs=38.9
Q ss_pred HHHhhccCchhhHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Q 017117 305 EFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTG 346 (377)
Q Consensus 305 E~~~~~aP~~m~s~~~gl~~l~~a~G~~l~~~l~~lv~~~t~ 346 (377)
+++.+.+|++-.+.-.|+|-++--.++.++..++.++..+|+
T Consensus 364 Sy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 364 SYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred HHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999999999988886
No 228
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=33.37 E-value=1.4e+02 Score=30.43 Aligned_cols=71 Identities=13% Similarity=-0.086 Sum_probs=45.8
Q ss_pred HHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hhhHHHHHHHHHH
Q 017117 61 ITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-----WGSAFGALAIAMG 135 (377)
Q Consensus 61 lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g-----~~~gF~i~~i~m~ 135 (377)
+..++.|..-.....+..+.-+++. +...|.++....|+|..++..+.+++.++.| |..-+.+-.+...
T Consensus 360 l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~ 433 (468)
T TIGR00788 360 IAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSL 433 (468)
T ss_pred HHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHH
Confidence 3344444333333445555444332 5789999999999999999999999999888 5555554444443
Q ss_pred HH
Q 017117 136 IS 137 (377)
Q Consensus 136 ~~ 137 (377)
..
T Consensus 434 ~~ 435 (468)
T TIGR00788 434 AP 435 (468)
T ss_pred HH
Confidence 33
No 229
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=32.65 E-value=75 Score=32.93 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017117 92 LDRFFNFFYLSVTVGAIVAFTLVVYIQM 119 (377)
Q Consensus 92 ~~s~F~~fY~~iNiGsl~a~~~~~yi~~ 119 (377)
-.++|..|..+-|+|.++|..++.++.+
T Consensus 178 AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 178 AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999887
No 230
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=32.13 E-value=0.98 Score=45.21 Aligned_cols=80 Identities=18% Similarity=0.225 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---hccchhhHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ---MEHGWGSAFG 128 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~---~~~g~~~gF~ 128 (377)
...+.++-.+.++|.|+.-+....+..|.-+++ .|...-.++..+.++|.+++..+...+. ++.+|++.+.
T Consensus 102 ~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~------~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~ 175 (451)
T PF00083_consen 102 FWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPK------HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLI 175 (451)
T ss_pred ccccccccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccc
Confidence 456777888899999999888888887776532 2556667777788888888866554443 3456999998
Q ss_pred HHHHHHHHH
Q 017117 129 ALAIAMGIS 137 (377)
Q Consensus 129 i~~i~m~~~ 137 (377)
++++..++.
T Consensus 176 ~~~~~~l~~ 184 (451)
T PF00083_consen 176 FGAIPSLLV 184 (451)
T ss_pred ccccccccc
Confidence 887765543
No 231
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=31.89 E-value=2.2e+02 Score=26.98 Aligned_cols=60 Identities=7% Similarity=-0.006 Sum_probs=43.1
Q ss_pred hhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHh
Q 017117 76 FGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 76 ~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~ 143 (377)
...+.++-++ .-.++.+....++..++..+.+++.|++|.+..+.+..+.+.++.+.+..
T Consensus 27 ~~~~~~~~s~--------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~ 86 (366)
T TIGR00886 27 MIKDDLGLST--------AQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGL 86 (366)
T ss_pred HHHHHhCCCH--------HHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 4556665432 23466677778888888888999999999888888877777776665543
No 232
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=31.14 E-value=3.4e+02 Score=28.06 Aligned_cols=89 Identities=16% Similarity=0.047 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCCC
Q 017117 4 FFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFDE 83 (377)
Q Consensus 4 i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~ 83 (377)
+.+|.++..+|.+++.+.+.... + ....+...+.++..+..+|.=++.|--.+++++.-++
T Consensus 348 fa~g~~~~g~~f~~l~~~~~~~~---~----------------~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~ 408 (493)
T PRK15462 348 FALGLGLMSAGFCILTLSARWSA---M----------------YGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIP 408 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC---C----------------CCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChH
Confidence 45677788888888877654210 0 0113344567777788999888888888888877542
Q ss_pred CChhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHH
Q 017117 84 RSKDYKTHLDRFFNFFYLSV-TVGAIVAFTLVVYI 117 (377)
Q Consensus 84 ~~~~~~~~~~s~F~~fY~~i-NiGsl~a~~~~~yi 117 (377)
+ .+......|+... -+|..++..+..+.
T Consensus 409 ---~---~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 409 ---G---VTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred ---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 3455666665533 46666665555544
No 233
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=30.85 E-value=3.5e+02 Score=27.16 Aligned_cols=84 Identities=14% Similarity=0.180 Sum_probs=52.2
Q ss_pred HHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHH---HHHHHHHHHhcc-chhhHHHHH-HHH
Q 017117 59 LYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIV---AFTLVVYIQMEH-GWGSAFGAL-AIA 133 (377)
Q Consensus 59 L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~---a~~~~~yi~~~~-g~~~gF~i~-~i~ 133 (377)
..++.+|.|+-=|-.-.+..+--++ +++..+.+ +| +-.+|.++ +|.+.+++.|.. +|+.....- .+.
T Consensus 303 ~~llG~G~G~~F~laL~li~~rs~~--a~~Aa~LS-gm-----aQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~ 374 (395)
T COG2807 303 ALLLGLGQGGAFPLALTLILLRSSD--AAIAAALS-GM-----AQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALAT 374 (395)
T ss_pred HHHHhCccchHHHHHHHHHHhhcCC--hHHHHHHH-HH-----hhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHH
Confidence 5888999999888888888887764 44433333 33 44555544 588889998865 466544332 222
Q ss_pred HHHHHHHHHhccccccc
Q 017117 134 MGISNMLFFIGTPLYRH 150 (377)
Q Consensus 134 m~~~l~~f~~g~~~y~~ 150 (377)
.+..+.-+..++++|.+
T Consensus 375 i~m~i~Gl~a~r~~~i~ 391 (395)
T COG2807 375 LLMLIFGLRAGRNRYIR 391 (395)
T ss_pred HHHHHHHhhcchhHHhH
Confidence 33334456667777654
No 234
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=30.41 E-value=1.7e+02 Score=30.43 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=34.0
Q ss_pred HHHHhhccCchhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 017117 304 LEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSII 341 (377)
Q Consensus 304 ~E~~~~~aP~~m~s~~~gl~~l~~a~G~~l~~~l~~lv 341 (377)
..+.++-.|++.|+.++|++..+..+|..+++.++.++
T Consensus 136 ~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 136 SSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999883
No 235
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=27.51 E-value=3e+02 Score=22.32 Aligned_cols=51 Identities=8% Similarity=0.127 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHh
Q 017117 93 DRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 93 ~s~F~~fY~~iNi-Gsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~ 143 (377)
++..+++...+++ +.+++...++.-.++-||-+|..+..+-+.+-.++=..
T Consensus 36 e~~~~~~~~~i~~ls~~~GG~~a~~~~~~kG~l~G~~~Gl~y~~il~lis~~ 87 (116)
T PF12670_consen 36 ESILPWLVVIIYILSVFIGGFYAGRKAGSKGWLHGLLVGLLYFLILLLISFL 87 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4555665555554 66777888888888999999999887776665554333
No 236
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=27.41 E-value=6.9e+02 Score=25.64 Aligned_cols=93 Identities=13% Similarity=0.011 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCC----------Chhh---hhhhh--hHHHHHHHHHHHHHHHHHHHHH
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDER----------SKDY---KTHLD--RFFNFFYLSVTVGAIVAFTLVV 115 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~----------~~~~---~~~~~--s~F~~fY~~iNiGsl~a~~~~~ 115 (377)
....+..+...+.+.+|.=+..+--++.+-|+++ ++++ +.+++ +.-.+==..--+|+++-|.+.+
T Consensus 344 ~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g 423 (462)
T PRK15034 344 NFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFG 423 (462)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHH
Confidence 4566777776677777777777777777777631 1111 01112 2222222333445555555555
Q ss_pred HHHhc-cchhhHHHHHHHHHHHHHHHHHh
Q 017117 116 YIQME-HGWGSAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 116 yi~~~-~g~~~gF~i~~i~m~~~l~~f~~ 143 (377)
+.-+. -+|..+|.+..+..++.+++=++
T Consensus 424 ~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 424 MSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 55443 45888888888887777766544
No 237
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=25.35 E-value=3.3e+02 Score=21.85 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=18.4
Q ss_pred hhHH-HHHHHHHHHHHHHHHhccccccc
Q 017117 124 GSAF-GALAIAMGISNMLFFIGTPLYRH 150 (377)
Q Consensus 124 ~~gF-~i~~i~m~~~l~~f~~g~~~y~~ 150 (377)
++++ .++++..+++.+.++.++++.++
T Consensus 72 ~~a~liv~~~~l~la~i~~~~~~~~l~~ 99 (121)
T PF07332_consen 72 WLAFLIVAGLYLLLALILLLIGRRRLRR 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555 45555566777788888888864
No 238
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=23.64 E-value=1.1e+02 Score=28.31 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=29.7
Q ss_pred CCchhHH--HHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 017117 281 ASQLQRV--GIGLAVSILSVIWAGLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILN 338 (377)
Q Consensus 281 ~s~l~ri--~iG~~l~~la~~~a~~~E~~~~~aP~~m~s~~~gl~~l~~a~G~~l~~~l~ 338 (377)
++++... ++++++++++++ .+-.-|..|| .|+||++.++..+++..++
T Consensus 106 ~~~~~~~l~~~~~~~~v~a~~-------lFPlWP~~~r---~gv~YlS~~~lgll~~~~~ 155 (224)
T PF03839_consen 106 PSPLMQYLIGALLLVGVIAIC-------LFPLWPRWMR---QGVYYLSVGALGLLGLFFA 155 (224)
T ss_pred CCcHHHHHHHHHHHHHHHHHH-------hhhcChHHHh---heeehhHHHHHHHHHHHHH
Confidence 4444443 344444444443 4667788777 5779999887777766654
No 239
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=23.59 E-value=39 Score=34.31 Aligned_cols=39 Identities=31% Similarity=0.454 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHh
Q 017117 105 VGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 105 iGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~f~~ 143 (377)
+|+.++....+++.|++||..+|.+-.++-+++.+.++.
T Consensus 394 ~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~ 432 (448)
T COG2271 394 IGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLP 432 (448)
T ss_pred hhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHH
Confidence 388888888999999999999999888877777766654
No 240
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=22.86 E-value=1.9e+02 Score=30.05 Aligned_cols=88 Identities=17% Similarity=0.356 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME---------- 120 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~---------- 120 (377)
-...+..==.++.+|-||==|+.++...|+=.+... -......|..-=+++=.|+.++.++....+..
T Consensus 143 ~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~R--Ga~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~l 220 (538)
T KOG0252|consen 143 VMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTR--GAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHL 220 (538)
T ss_pred hhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccc--cceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHH
Confidence 344455556789999999989888877766543221 01235556666667777777776666655432
Q ss_pred -cchhhHHHHHHHHHHHHHHHHHh
Q 017117 121 -HGWGSAFGALAIAMGISNMLFFI 143 (377)
Q Consensus 121 -~g~~~gF~i~~i~m~~~l~~f~~ 143 (377)
.=|++-|++.++ .++++|..
T Consensus 221 d~vWRl~~glg~v---pa~~~ly~ 241 (538)
T KOG0252|consen 221 DGVWRIIFGLGAV---PALLVLYF 241 (538)
T ss_pred HHHHHHHHHHHHH---HHHHHHHh
Confidence 339998887655 45555554
No 241
>TIGR00901 2A0125 AmpG-related permease.
Probab=22.60 E-value=2.1e+02 Score=27.22 Aligned_cols=46 Identities=7% Similarity=-0.010 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVT 104 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iN 104 (377)
..+.....+..++.|..-+...++..+.++++. +.+.|..++...|
T Consensus 310 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~ 355 (356)
T TIGR00901 310 LMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHHHHh
Confidence 445556666788889999999999999988643 5677777776655
No 242
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=21.55 E-value=11 Score=37.45 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=50.5
Q ss_pred cccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Q 017117 68 GIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIAMGISNML 140 (377)
Q Consensus 68 ~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~m~~~l~~ 140 (377)
+.-|....+.+|.|+.+. |..+..+-+..-++|+++++.+.+++.++.+-...|.+-++.++++.++
T Consensus 365 g~~~~~~~~~~ElfPt~~------R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~ 431 (451)
T PF00083_consen 365 GWGPLPWIYTAELFPTKV------RSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIF 431 (451)
T ss_pred cccccccccccccccccc------cccccccccccccccccccccccccccccccccccchhhHHHHHHHHhh
Confidence 455777788899998543 6888899999999999999999999998888445566655555555543
No 243
>PF09515 Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ); InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Streptococcus mutans and Streptococcus pyogenes), YuaJ is the only THI-regulated gene. The thiamine transporter YuaJ, also known as ThiT, is a member of the energy coupling factor (ECF) transporters, a new class of transport proteins that shares some resemblance with ABC transporters [, ]. ; PDB: 3RLB_B.
Probab=21.50 E-value=4.9e+02 Score=22.98 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=24.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHH---HHHHHHhhccCchhhHHH
Q 017117 279 RGASQLQRVGIGLAVSILSVIWA---GLLEFLYEEAPDAMKSIG 319 (377)
Q Consensus 279 ~~~s~l~ri~iG~~l~~la~~~a---~~~E~~~~~aP~~m~s~~ 319 (377)
+.-+...++..|.+++.+.-.+. ++.=|+.+.||+++....
T Consensus 101 ~~~~~~~~i~~g~~i~~~~r~~~h~isGvif~~~yAp~g~~~~~ 144 (177)
T PF09515_consen 101 RYKKSYLNIILGTFIAVFLRYFCHFISGVIFFGSYAPEGMNPWL 144 (177)
T ss_dssp SSS--HHHHHHHHHHHHHHHHHHHHHHHHHH-GGG--TT--HHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccHHH
Confidence 33456778888988888775544 667778899999985443
No 244
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=21.07 E-value=1.5e+02 Score=31.39 Aligned_cols=38 Identities=13% Similarity=0.331 Sum_probs=29.1
Q ss_pred HHHHHHhhccCchhhHHHHHHHHH-----HHHHHHHHHHhhhh
Q 017117 302 GLLEFLYEEAPDAMKSIGSAYAAL-----AGGLGCFAASILNS 339 (377)
Q Consensus 302 ~~~E~~~~~aP~~m~s~~~gl~~l-----~~a~G~~l~~~l~~ 339 (377)
+...++...+|++++..++|+.-. .-++|+++||.++.
T Consensus 479 a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~ 521 (618)
T KOG3762|consen 479 AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVE 521 (618)
T ss_pred HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhe
Confidence 667788999999998888776543 34788888887654
No 245
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=20.90 E-value=1.4e+02 Score=24.07 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccccCC
Q 017117 125 SAFGALAIAMGISNMLFFIGTPLYRHRL 152 (377)
Q Consensus 125 ~gF~i~~i~m~~~l~~f~~g~~~y~~~~ 152 (377)
-.|.+..+.|+++++.|++.=+..+..+
T Consensus 54 ~~~~~~~~w~~~A~~ly~~RP~s~R~~~ 81 (103)
T PF11027_consen 54 SMFMMMMLWMVLAMALYLLRPSSLRSRS 81 (103)
T ss_pred cHHHHHHHHHHHHHHHHHcCchhhcCCC
Confidence 4577778889999999998777776653
No 246
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=20.82 E-value=7.7e+02 Score=23.86 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 017117 3 VFFFCCLNFSEGLTGITLCA 22 (377)
Q Consensus 3 ~i~~~~~v~~~G~~lL~~sa 22 (377)
+++...+.+..|.+++-+..
T Consensus 96 ~~l~l~l~~~~g~~llg~~~ 115 (303)
T COG1575 96 LILSLALFLLAGLALLGVIL 115 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666766666653
Done!