Query 017117
Match_columns 377
No_of_seqs 185 out of 1524
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 09:13:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.7 1.2E-16 4.1E-21 161.5 11.0 307 52-374 109-490 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.4 3.1E-12 1.1E-16 127.9 19.2 258 53-342 109-446 (491)
3 1pw4_A Glycerol-3-phosphate tr 98.4 1.1E-05 3.8E-10 78.6 17.9 83 53-141 120-203 (451)
4 3o7q_A L-fucose-proton symport 98.2 0.00023 7.8E-09 69.0 23.3 109 3-142 93-227 (438)
5 2gfp_A EMRD, multidrug resista 97.9 1E-05 3.5E-10 77.3 6.8 82 52-139 88-169 (375)
6 1pw4_A Glycerol-3-phosphate tr 97.0 0.0018 6.3E-08 62.7 8.6 87 52-144 346-433 (451)
7 4gc0_A D-xylose-proton symport 96.9 0.056 1.9E-06 52.9 18.9 81 51-137 125-213 (491)
8 4aps_A DI-OR tripeptide H+ sym 96.8 0.0033 1.1E-07 62.0 8.8 91 51-148 385-475 (491)
9 2xut_A Proton/peptide symporte 95.8 0.012 4E-07 58.6 6.5 92 52-149 405-507 (524)
10 2cfq_A Lactose permease; trans 95.7 0.008 2.7E-07 58.4 4.9 83 55-143 315-398 (417)
11 3o7q_A L-fucose-proton symport 95.1 0.095 3.3E-06 50.2 10.2 80 56-143 351-431 (438)
12 4gc0_A D-xylose-proton symport 91.3 2.9 9.8E-05 40.5 13.7 67 69-141 387-459 (491)
13 2gfp_A EMRD, multidrug resista 87.7 0.18 6E-06 47.4 1.6 78 51-135 290-367 (375)
14 2cfq_A Lactose permease; trans 22.8 1.8E+02 0.0062 27.0 7.2 76 52-135 9-84 (417)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.67 E-value=1.2e-16 Score=161.51 Aligned_cols=307 Identities=22% Similarity=0.290 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++..+.++|.|+..|+..++++|.+++++. .+..+.|++++.+.|+|..+++.+.+++.++.||++.|.+.+
T Consensus 109 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~ 185 (524)
T 2xut_A 109 VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPG 185 (524)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT---THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccchhHHHHHHHHcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 45678888999999999999999999999986442 235788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCchhHHHHHHHHHHHhccccccCcccccccccCCCcccccCCcccccCCCcchhhH
Q 017117 132 IAMGISNMLFFIGTPLYRHRLPGGSPLTRVAQVLVAAFRKRHAAFSSSELIGLYEVPGKHSAIKGSGKIAHTDDFRCLDK 211 (377)
Q Consensus 132 i~m~~~l~~f~~g~~~y~~~~p~gs~l~~~~~vi~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (377)
+..+++.+.++..++.++..+|++++..+..+.+..+.+++..+.+ +... +.+......... ...+.+....+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~ 260 (524)
T 2xut_A 186 VLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIGL-VLALIGGVSAAY---ALVNIPTLGIVAG 260 (524)
T ss_dssp HHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHHH-HHHHHHHHHHHH---TGGGTTTTCSSHH
T ss_pred HHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccch-hhhhhhhhhhhh---hhcccchhhhhhh
Confidence 9998888888777666655555544433333333333333221100 0000 000000000000 0000000000000
Q ss_pred HHhhh--ccccCCCCCc-------ccccchhhhHhhHhhhhhhhhhhHHHHHHHHhhchhHHHHHHHHhhcc----c---
Q 017117 212 AALEL--KEDVINPSPW-------KLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYTMNTH----M--- 275 (377)
Q Consensus 212 a~~~~--~~~~~~~~~w-------~l~~~~~vee~k~~~~~l~l~~~~iif~~~~~Q~~t~~~~qa~~md~~----~--- 275 (377)
+.... ..+...+.|| +.++..++++.|+++..+++++...++|..+.|..+.+..|+.+++.+ .
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (524)
T 2xut_A 261 LCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMM 340 (524)
T ss_dssp HHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCSSSCHHHH
T ss_pred hhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCeeecHHHH
Confidence 00000 0000001233 122334456778888888888888899999999888888887766541 1
Q ss_pred ------------------------CCCCCCCchhHHHHHHHHHHHHHHHH------------------------------
Q 017117 276 ------------------------GHPRGASQLQRVGIGLAVSILSVIWA------------------------------ 301 (377)
Q Consensus 276 ------------------------~~~~~~s~l~ri~iG~~l~~la~~~a------------------------------ 301 (377)
|+++++++.+++.+|+++.+++++..
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 420 (524)
T 2xut_A 341 QALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEV 420 (524)
T ss_dssp HTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHH
Confidence 11223556677888888777765421
Q ss_pred ----HHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCCCC-CCCcCchhHHHHHHhh
Q 017117 302 ----GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIKSVTGNPKKGQPNWLAQ-NINTDTSTGLSRSMAM 374 (377)
Q Consensus 302 ----~~~E~~~~~aP~~m~s~~~gl~~l~~a~G~~l~~~l~~lv~~~t~~~~~~~~~W~~~-~ln~~~ld~~y~~l~~ 374 (377)
....+..+.+|+++|+.++|++.....+|+.++..+...+...+. .+|.++ ++|.+ .+.||+.++
T Consensus 421 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~ 490 (524)
T 2xut_A 421 LVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV------TEQIVQTGMSVT--AFQMFFFAG 490 (524)
T ss_dssp HHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH------HHHHHHHHSCHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc------cccccccccccc--ccHHHHHHH
Confidence 122345789999999999999999999999999999887764332 247654 34433 233565544
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.45 E-value=3.1e-12 Score=127.87 Aligned_cols=258 Identities=18% Similarity=0.195 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAI 132 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i 132 (377)
..++++..+.++|.|+..|+..++++|.+++++. .|...+++++.+.|+|..+++.+.+++.++.||++.|.++++
T Consensus 109 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~----~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~ 184 (491)
T 4aps_A 109 SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDR----RRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAI 184 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTT----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccc----cceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4577888899999999999999999999987553 367899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccC---CCCCC-chhHHHHHHH--------------HHHHhccccccCcccccccccCCCcccc
Q 017117 133 AMGISNMLFFIGTPLYRHR---LPGGS-PLTRVAQVLV--------------AAFRKRHAAFSSSELIGLYEVPGKHSAI 194 (377)
Q Consensus 133 ~m~~~l~~f~~g~~~y~~~---~p~gs-~l~~~~~vi~--------------~a~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (377)
..+++++.++..++++... +|+.. ...+..+... ........+.. .. .
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~--~~---~--------- 250 (491)
T 4aps_A 185 GMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLP--AY---I--------- 250 (491)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTT--HH---H---------
T ss_pred HHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccc--cc---h---------
Confidence 9888888877655544332 12111 1111111000 00000000000 00 0
Q ss_pred cCCcccccCCCcchhhHHHhhhccccCCCCCcccccchhhhHhhHhhhhhhhhhhHHHHHHHHhhchhHHHHHHHH-hhc
Q 017117 195 KGSGKIAHTDDFRCLDKAALELKEDVINPSPWKLCTVTQVEEVKTLVRLVPIPACTIMLNVILTEFLTLSVQQAYT-MNT 273 (377)
Q Consensus 195 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~w~l~~~~~vee~k~~~~~l~l~~~~iif~~~~~Q~~t~~~~qa~~-md~ 273 (377)
.+ .............. ..|+... ...+++|+..+..++++...++|..+.|..+.+..+..+ .+.
T Consensus 251 ----~~-----~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (491)
T 4aps_A 251 ----NL-----LTIVAIAIPVFYFA----WMISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDS 316 (491)
T ss_dssp ----HH-----HHHHHHHHHHHHHH----HHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCC
T ss_pred ----hh-----hhHHHHHHHHHHHH----HHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcc
Confidence 00 00000000000000 0111111 113566777888899999999999999999988887765 444
Q ss_pred cc--------------------------CC-CCCCCchhHHHHHHHHHHHHHHHH-------------------------
Q 017117 274 HM--------------------------GH-PRGASQLQRVGIGLAVSILSVIWA------------------------- 301 (377)
Q Consensus 274 ~~--------------------------~~-~~~~s~l~ri~iG~~l~~la~~~a------------------------- 301 (377)
+. |. ++.+....++.+|+++.++++++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 396 (491)
T 4aps_A 317 SWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALV 396 (491)
T ss_dssp SSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHH
T ss_pred CccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHH
Confidence 41 22 233566778888888877775321
Q ss_pred ---------HHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 017117 302 ---------GLLEFLYEEAPDAMKSIGSAYAALAGGLGCFAASILNSIIK 342 (377)
Q Consensus 302 ---------~~~E~~~~~aP~~m~s~~~gl~~l~~a~G~~l~~~l~~lv~ 342 (377)
....+..+..|++.|+.++|++.....+|+.++..+...+.
T Consensus 397 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~ 446 (491)
T 4aps_A 397 ILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYN 446 (491)
T ss_dssp HHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23445678999999999999999999999999988876654
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.39 E-value=1.1e-05 Score=78.62 Aligned_cols=83 Identities=11% Similarity=0.137 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHH
Q 017117 53 LYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALA 131 (377)
Q Consensus 53 ~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g-~~~gF~i~~ 131 (377)
..++++..+.++|.|..-|...++++|.++++ +|...++++..+.++|..+++.+.+++-+..| |++.|.+.+
T Consensus 120 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~------~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~ 193 (451)
T 1pw4_A 120 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQK------ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPA 193 (451)
T ss_dssp SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTT------HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHCCch------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 35777888999999999999999999999742 26889999999999999999999999888898 999999998
Q ss_pred HHHHHHHHHH
Q 017117 132 IAMGISNMLF 141 (377)
Q Consensus 132 i~m~~~l~~f 141 (377)
+..++..++.
T Consensus 194 ~~~~~~~~~~ 203 (451)
T 1pw4_A 194 FCAILVALFA 203 (451)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8776655443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.25 E-value=0.00023 Score=69.05 Aligned_cols=109 Identities=13% Similarity=0.067 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCccCCCCCCccccccccCCCCCCcchhHHHHHHHHHHHHHhcccccccchhhhhccCC
Q 017117 3 VFFFCCLNFSEGLTGITLCATMKVFMPNQDNCDRISQLLGSCEPAKSWQMLYLYTVLYITGFGAAGIRPCVSSFGADQFD 82 (377)
Q Consensus 3 ~i~~~~~v~~~G~~lL~~sa~~p~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~ 82 (377)
++.++.++..+|.++..+.+..+ +.+.++++..+.++|.|..-|...++++|.++
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~ 147 (438)
T 3o7q_A 93 GIITGLFLYALGAALFWPAAEIM-------------------------NYTLFLVGLFIIAAGLGCLETAANPFVTVLGP 147 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHhccccc-------------------------cHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcC
Confidence 45677777777777765433311 35678889999999999999999999999997
Q ss_pred CCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hccc-------------------------hhhHHHHHHHHHHH
Q 017117 83 ERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQ-MEHG-------------------------WGSAFGALAIAMGI 136 (377)
Q Consensus 83 ~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~-~~~g-------------------------~~~gF~i~~i~m~~ 136 (377)
+++ |...++++..+.++|..+++.+.+++. +..+ |++.|.+.++...+
T Consensus 148 ~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 221 (438)
T 3o7q_A 148 ESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLL 221 (438)
T ss_dssp STT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 543 567789999999999999999999987 5555 99999877766655
Q ss_pred HHHHHH
Q 017117 137 SNMLFF 142 (377)
Q Consensus 137 ~l~~f~ 142 (377)
..+.++
T Consensus 222 ~~~~~~ 227 (438)
T 3o7q_A 222 VALLIM 227 (438)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.95 E-value=1e-05 Score=77.30 Aligned_cols=82 Identities=11% Similarity=0.180 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...++++..+.++|.|...|...++..|.+++++ |...++++..+.++|..+++.+.+++.++.||++.|.+.+
T Consensus 88 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (375)
T 2gfp_A 88 LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLL 161 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHH
Confidence 4567778888999999999999999999997532 6788999999999999999999999999999999999888
Q ss_pred HHHHHHHH
Q 017117 132 IAMGISNM 139 (377)
Q Consensus 132 i~m~~~l~ 139 (377)
+..++..+
T Consensus 162 ~~~~~~~~ 169 (375)
T 2gfp_A 162 VLCAGVTF 169 (375)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 87766554
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=96.97 E-value=0.0018 Score=62.69 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhccchhhHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTV-GAIVAFTLVVYIQMEHGWGSAFGAL 130 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNi-Gsl~a~~~~~yi~~~~g~~~gF~i~ 130 (377)
...+.+.+.+++++.++.-+...++..|.++++ .+...+.++....++ |..+++.+.+++.++.||...|.+.
T Consensus 346 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 419 (451)
T 1pw4_A 346 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKK------AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVM 419 (451)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 455667778888888888888889999998753 268999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 017117 131 AIAMGISNMLFFIG 144 (377)
Q Consensus 131 ~i~m~~~l~~f~~g 144 (377)
++..+++.+.++..
T Consensus 420 ~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 420 IGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99888888776653
No 7
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.90 E-value=0.056 Score=52.88 Aligned_cols=81 Identities=14% Similarity=0.221 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc--------cc
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQME--------HG 122 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~--------~g 122 (377)
....++++-.+.++|.|+.-|....+++|..+++ +|.....++.+++++|.+++..+...+... .+
T Consensus 125 ~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~------~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4gc0_A 125 YVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH------IRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDG 198 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH------hhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchh
Confidence 4677899999999999999999999999988632 367788888999999999887776666543 34
Q ss_pred hhhHHHHHHHHHHHH
Q 017117 123 WGSAFGALAIAMGIS 137 (377)
Q Consensus 123 ~~~gF~i~~i~m~~~ 137 (377)
|++.+.+..+..++.
T Consensus 199 ~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 199 WRYMFASECIPALLF 213 (491)
T ss_dssp HHHHHHTTHHHHHHH
T ss_pred hHHHhhhhhhhhhhh
Confidence 666665555444433
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=96.79 E-value=0.0033 Score=61.97 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~ 130 (377)
....+.++..+.++|.+..-|...++..|.++++. |.....+++...++|+.+++.+.+++.+ .++...|.+.
T Consensus 385 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~ 457 (491)
T 4aps_A 385 SPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYF 457 (491)
T ss_dssp CTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 34566778888999999999999999999998643 5788888999999999999999888876 4777888888
Q ss_pred HHHHHHHHHHHHhccccc
Q 017117 131 AIAMGISNMLFFIGTPLY 148 (377)
Q Consensus 131 ~i~m~~~l~~f~~g~~~y 148 (377)
++..+++.++++...++.
T Consensus 458 ~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 458 GLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888887777766655443
No 9
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=95.81 E-value=0.012 Score=58.56 Aligned_cols=92 Identities=16% Similarity=0.165 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcc--ch------
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEH--GW------ 123 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~--g~------ 123 (377)
...+.++..+.++|.|..-|...++..|..+++. +.....+++...++|+.+++.+.+++.+.. +|
T Consensus 405 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~ 478 (524)
T 2xut_A 405 IFWQILPYALLTFGEVLVSATGLEFAYSQAPKAM------KGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGM 478 (524)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTC------CTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 4456678888999999999999999999998543 678889999999999999999999998742 23
Q ss_pred ---hhHHHHHHHHHHHHHHHHHhcccccc
Q 017117 124 ---GSAFGALAIAMGISNMLFFIGTPLYR 149 (377)
Q Consensus 124 ---~~gF~i~~i~m~~~l~~f~~g~~~y~ 149 (377)
+..|.+.++..+++.++++...++++
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 479 SVTAFQMFFFAGFAILAAIVFALYARSYQ 507 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33477777777777777665555443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=95.75 E-value=0.008 Score=58.37 Aligned_cols=83 Identities=11% Similarity=0.080 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 017117 55 LYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNF-FYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALAIA 133 (377)
Q Consensus 55 ~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~-fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~i~ 133 (377)
+.+...+.+++.+++-+...++..|.+++ + .+.+.+.+ +..+.++|+.+++.+.+++.++.||...|.+.++.
T Consensus 315 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~---~---~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~ 388 (417)
T 2cfq_A 315 VVILKTLHMFEVPFLLVGCFKYITSQFEV---R---FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV 388 (417)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHSCH---H---HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCH---H---HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHH
Confidence 34444455556666666667788888863 2 35666777 46677799999999999999999999999999888
Q ss_pred HHHHHHHHHh
Q 017117 134 MGISNMLFFI 143 (377)
Q Consensus 134 m~~~l~~f~~ 143 (377)
.+++.++.+.
T Consensus 389 ~l~~~~~~~~ 398 (417)
T 2cfq_A 389 ALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 8887776544
No 11
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=95.11 E-value=0.095 Score=50.23 Aligned_cols=80 Identities=11% Similarity=0.083 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-hhhHHHHHHHHH
Q 017117 56 YTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHG-WGSAFGALAIAM 134 (377)
Q Consensus 56 ~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g-~~~gF~i~~i~m 134 (377)
.+.+.++.++.+..-|...+...|.++++ +.....+.. ..++|+.+++.+.+++.|+.| |..+|.+++++.
T Consensus 351 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 422 (438)
T 3o7q_A 351 LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCF 422 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34557788888888899999988888743 122222222 456999999999999999999 999999988777
Q ss_pred HHHHHHHHh
Q 017117 135 GISNMLFFI 143 (377)
Q Consensus 135 ~~~l~~f~~ 143 (377)
++.++..+.
T Consensus 423 ~~~~~~~~~ 431 (438)
T 3o7q_A 423 AVIFIFARF 431 (438)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 665554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=91.26 E-value=2.9 Score=40.46 Aligned_cols=67 Identities=4% Similarity=-0.031 Sum_probs=50.0
Q ss_pred ccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh------ccchhhHHHHHHHHHHHHHHHH
Q 017117 69 IRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQM------EHGWGSAFGALAIAMGISNMLF 141 (377)
Q Consensus 69 ~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~------~~g~~~gF~i~~i~m~~~l~~f 141 (377)
.-|....+.+|.|+.+ .|..+..+-+...++|+++++.+.|++.+ ..++...|.+-++..+++.+..
T Consensus 387 ~~~~~~~~~~E~fPt~------~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNA------IRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp TTHHHHHHHHHSSCTT------THHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3466677889999853 37888999999999999999888888754 3566677777666666665543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=87.69 E-value=0.18 Score=47.43 Aligned_cols=78 Identities=13% Similarity=-0.011 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 017117 51 QMLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGAL 130 (377)
Q Consensus 51 ~~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~ 130 (377)
+...++++..+..+|.|..-|...+...|.++ + ++.+.+..+....++|..+++.+.+++.++.+|...|.+.
T Consensus 290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p--~-----~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP--F-----LAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH--H-----HHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC--c-----ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 34556677888899999999999999999874 1 2688889999999999999999999999988999998886
Q ss_pred HHHHH
Q 017117 131 AIAMG 135 (377)
Q Consensus 131 ~i~m~ 135 (377)
++.++
T Consensus 363 ~~~~~ 367 (375)
T 2gfp_A 363 LMGLL 367 (375)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=22.77 E-value=1.8e+02 Score=26.99 Aligned_cols=76 Identities=9% Similarity=0.047 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhcccccccchhhhhccCCCCChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHH
Q 017117 52 MLYLYTVLYITGFGAAGIRPCVSSFGADQFDERSKDYKTHLDRFFNFFYLSVTVGAIVAFTLVVYIQMEHGWGSAFGALA 131 (377)
Q Consensus 52 ~~~~~~~L~lia~G~G~~Kpnv~~~~~dqf~~~~~~~~~~~~s~F~~fY~~iNiGsl~a~~~~~yi~~~~g~~~gF~i~~ 131 (377)
...+.....+...+.+.+-|-.+.+..++++-++.. . .+......++..++..+.+++.|++|-+-.+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~----~----g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~ 80 (417)
T 2cfq_A 9 FWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD----T----GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWII 80 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTT----S----HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH----H----HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 334444445566667777788888887776543321 2 33344556677777788999999999777666655
Q ss_pred HHHH
Q 017117 132 IAMG 135 (377)
Q Consensus 132 i~m~ 135 (377)
+.+.
T Consensus 81 ~~~~ 84 (417)
T 2cfq_A 81 TGML 84 (417)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 5443
Done!