Query 017118
Match_columns 377
No_of_seqs 235 out of 374
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 05:46:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017118.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017118hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 3E-118 6E-123 874.0 24.9 298 55-377 43-355 (355)
2 PF01167 Tub: Tub family; Int 100.0 6.1E-81 1.3E-85 593.5 18.6 229 121-371 1-246 (246)
3 KOG2503 Tubby superfamily prot 99.8 1.5E-19 3.3E-24 184.4 4.5 80 283-374 485-564 (565)
4 PF12043 DUF3527: Domain of un 98.3 6E-05 1.3E-09 76.0 20.2 72 283-372 273-344 (346)
5 PF12937 F-box-like: F-box-lik 98.1 1.1E-06 2.4E-11 63.1 1.3 37 57-101 1-37 (47)
6 PF00646 F-box: F-box domain; 97.7 4.9E-06 1.1E-10 59.3 -0.9 39 56-102 2-40 (48)
7 PLN03215 ascorbic acid mannose 97.7 1.8E-05 3.9E-10 80.6 2.1 41 55-102 2-42 (373)
8 smart00256 FBOX A Receptor for 97.6 1.6E-05 3.4E-10 54.2 -0.0 34 60-101 1-34 (41)
9 KOG2997 F-box protein FBX9 [Ge 92.0 0.056 1.2E-06 54.7 0.7 44 54-100 101-147 (366)
10 KOG2120 SCF ubiquitin ligase, 85.6 0.21 4.6E-06 50.8 -0.5 68 56-131 97-167 (419)
11 KOG0274 Cdc4 and related F-box 36.5 8.7 0.00019 41.4 -0.9 42 53-102 104-145 (537)
12 KOG4341 F-box protein containi 36.1 15 0.00033 38.9 0.8 53 58-119 73-125 (483)
13 PF11038 DGF-1_5: Dispersed ge 31.5 68 0.0015 31.1 4.2 99 83-209 20-125 (278)
14 PRK13890 conjugal transfer pro 23.5 74 0.0016 27.5 2.7 35 57-104 84-118 (120)
15 PF14642 FAM47: FAM47 family 22.3 48 0.001 32.9 1.5 37 57-103 138-177 (258)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=2.8e-118 Score=874.01 Aligned_cols=298 Identities=56% Similarity=0.956 Sum_probs=272.0
Q ss_pred CCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHHHhcCCCccCCCCCCccccCCCCCCCceEEEEEe
Q 017118 55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRR 134 (377)
Q Consensus 55 ~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~~v~~p~~~g~~tfp~sL~qPgPrd~~iQC~I~R 134 (377)
+.|++||||+|+|+|+|+|++|+.||+|++||+||+||+.||++++|||++|+.+|++|||+||+||||+|.++||+|+|
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R 122 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR 122 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCceeEEeeecCCCC--CCCCeeEEEEeccccCCceeEEEeccCCCccCCccceeeeecccceecEEEEecCCCCCCC
Q 017118 135 NKKTSTFYLYLALTPSF--SEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNG 212 (377)
Q Consensus 135 ~K~~~tY~LYl~l~~~~--~d~gkfLLaArK~rr~~tSnYiISld~~dlsr~s~~yvGKLRSNflGTkF~IYD~gpp~~~ 212 (377)
||+|.+|+||+.|..++ .|++||||||||+||+|++|||||+|++||||++++||||||||||||||||||+|
T Consensus 123 dks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g----- 197 (355)
T KOG2502|consen 123 DKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNG----- 197 (355)
T ss_pred ccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCC-----
Confidence 99999999999998876 37899999999999999999999999999999999999999999999999999986
Q ss_pred CCCCCCCcccccccccccCCCCCcceeEEEEEEeecccCCCCCceeEEEeeCCC-C---------CCccchhhhhhcc--
Q 017118 213 AKPSSSRGSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPS-S---------GETADDIKMKKAE-- 280 (377)
Q Consensus 213 ~~~~~~r~~r~~~~k~vsp~v~~g~~ela~V~Ye~Nvlg~rGPRrM~v~i~~P~-~---------~e~~~~~~~~~~~-- 280 (377)
.+++ ++++ ++|.+++|||+|+||+||||+||||||+|+|++.. . ++......+.+..
T Consensus 198 ~~~~-----r~~~------~~~~~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~~~~~v~~q~~~~~~~~l~r~~~k 266 (355)
T KOG2502|consen 198 VNPS-----RRFN------KVPSGRQELAAVIYETNVLGFRGPRRMTVIMPGISPSAPGGRVPVQPENDHPSLLFRSQNK 266 (355)
T ss_pred CCcc-----cccc------cCCcccceeeEEEEeeccccccCCceeEEeccCCCCCCCCCcccccccccccchhhhcccc
Confidence 3332 2232 68999999999999999999999999999998721 1 1111111222222
Q ss_pred -cCCeeEeeeCCCccccCCceEEeccCCcccccccceeEEEeccCCCCCCCCCCCCeEEEEeeeecCCeeEEEccCCCCH
Q 017118 281 -NAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSA 359 (377)
Q Consensus 281 -~~~~~~L~nK~P~wne~~~~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~d~~~iiLQFGKv~kd~F~mD~~yPlS~ 359 (377)
.+++++|+||.|+|||++||||||||||||+||||||||||+. +.++|||||||||+|+|||||+||||+
T Consensus 267 ~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~~---------~p~~iiLQFGrV~kD~FTmDYrYPlSa 337 (355)
T KOG2502|consen 267 DKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHAL---------DPEYIILQFGRVGKDVFTMDYRYPLSA 337 (355)
T ss_pred CcccceEeecCCCccccccceEEEecCCeEEEeeecceEEeccC---------CCCEEEEEeeeeccceeeecccCccHH
Confidence 2489999999999999999999999999999999999999986 569999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccC
Q 017118 360 FQAFAICLTSFGTKLACE 377 (377)
Q Consensus 360 ~QAFaI~LssfdtKlACE 377 (377)
||||||||||||+|||||
T Consensus 338 ~QAFaIcLSSFdtKlaCe 355 (355)
T KOG2502|consen 338 FQAFAICLSSFDTKLACE 355 (355)
T ss_pred HHHHHHHHHhccccccCC
Confidence 999999999999999998
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=6.1e-81 Score=593.47 Aligned_cols=229 Identities=53% Similarity=0.839 Sum_probs=180.0
Q ss_pred CCCCCCceEEEEEeeecCceeEEeeecCCCCC-CCCeeEEEEeccccCCceeEEEeccCCCccCCccceeeeecccceec
Q 017118 121 PGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGT 199 (377)
Q Consensus 121 PgPrd~~iQC~I~R~K~~~tY~LYl~l~~~~~-d~gkfLLaArK~rr~~tSnYiISld~~dlsr~s~~yvGKLRSNflGT 199 (377)
|||+|++|||+|+|||+|.+|+||+.|+.++. ++|+|||||||++++++||||||++++|++|++++|||||||||+||
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT 80 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT 80 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence 89999999999999999988777777776654 88999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCcccccccccccCCCCCcceeEEEEEEeecccCCCCCceeEEEeeCCCCCCc-----c--c
Q 017118 200 NFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSSGET-----A--D 272 (377)
Q Consensus 200 kF~IYD~gpp~~~~~~~~~r~~r~~~~k~vsp~v~~g~~ela~V~Ye~Nvlg~rGPRrM~v~i~~P~~~e~-----~--~ 272 (377)
+|+|||+|++.+... ..+|..+.+++|||+|.|++||||++|||+|+|+||.+..... . .
T Consensus 81 ~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~~~~~~~~~~ 147 (246)
T PF01167_consen 81 EFTIYDNGPNPKKSK-------------SISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQESGGRVPFQ 147 (246)
T ss_dssp EEEEEESSB-CCCST-------------CCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-----B----
T ss_pred EEEEECCCCCCcccc-------------ccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCccccccceeeeee
Confidence 999999996554332 1256677889999999999999999999999999998432211 0 0
Q ss_pred ------hhhhhhc---ccCCeeEeeeCCCccccCCceEEeccCCcccccccceeEEEeccCCCCCCCCCCCCeEEEEeee
Q 017118 273 ------DIKMKKA---ENAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGK 343 (377)
Q Consensus 273 ------~~~~~~~---~~~~~~~L~nK~P~wne~~~~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~d~~~iiLQFGK 343 (377)
....... ..++.++|+||.|+||+++++|+|||+||||+|||||||||+++ ++++|||||||
T Consensus 148 p~~~~~~~~~~~~~~~~~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~~---------~~~~~~lqfGk 218 (246)
T PF01167_consen 148 PLNQEKDSLLSRFQNKKKDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNFQLVHPS---------DPDRIVLQFGK 218 (246)
T ss_dssp -SS-CCCSHHHHHHCT-TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEEEEEBTT---------BTTSESEEEEE
T ss_pred ccccccccccccccccCCcceEEEecCCCcEeccCCeEEeccCCeEeccccceeEEEccC---------CCCeEEEEEEE
Confidence 0011111 12389999999999999999999999999999999999999875 57899999999
Q ss_pred ecCCeeEEEccCCCCHHHHHHHHHHhcc
Q 017118 344 VGDDIFTMDYRQPLSAFQAFAICLTSFG 371 (377)
Q Consensus 344 v~kd~F~mD~~yPlS~~QAFaI~Lssfd 371 (377)
|++|+|+|||+|||||+|||||||||||
T Consensus 219 ~~~~~f~~d~~~Pls~~qAF~i~lssfd 246 (246)
T PF01167_consen 219 VGKDVFTMDFRYPLSPLQAFAIALSSFD 246 (246)
T ss_dssp EETTEEEEEEETT-BHHHHHHHHHHHHH
T ss_pred ecCCEEEEEecCCCCHHHHHHHHHhcCC
Confidence 9999999999999999999999999998
No 3
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only]
Probab=99.77 E-value=1.5e-19 Score=184.36 Aligned_cols=80 Identities=41% Similarity=0.767 Sum_probs=73.2
Q ss_pred CeeEeeeCCCccccCCceEEeccCCcccccccceeEEEeccCCCCCCCCCCCCeEEEEeeeecCCeeEEEccCCCCHHHH
Q 017118 283 GCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQA 362 (377)
Q Consensus 283 ~~~~L~nK~P~wne~~~~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~d~~~iiLQFGKv~kd~F~mD~~yPlS~~QA 362 (377)
+..++.||+|.|||+.|-|+|||.||||+.|.||||+-.. .+.|||||+|+.+.|++||+||+|+.||
T Consensus 485 R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~------------gkQvmqFgRidg~aytldfqypfSa~Qa 552 (565)
T KOG2503|consen 485 RCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELF------------GKQVMQFGRIDGPAYTLDFQYPFSAGQA 552 (565)
T ss_pred eEEEeecCCccccccceEEEeccCCccchhhhccceEeec------------chhhheeccccCCcccCCCCCchHHHHH
Confidence 5679999999999999999999999999999999999653 4568999999999999999999999999
Q ss_pred HHHHHHhccccc
Q 017118 363 FAICLTSFGTKL 374 (377)
Q Consensus 363 FaI~LssfdtKl 374 (377)
||+||++.-..|
T Consensus 553 FavalanvtqRL 564 (565)
T KOG2503|consen 553 FAVALANVTQRL 564 (565)
T ss_pred HHHHHhhhhhhc
Confidence 999999875443
No 4
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=98.35 E-value=6e-05 Score=76.01 Aligned_cols=72 Identities=22% Similarity=0.428 Sum_probs=52.7
Q ss_pred CeeEeeeCCCccccCCceEEeccCCcccccccceeEEEeccCCCCCCCCCCCCeEEEEeeeecCCeeEEEccCCCCHHHH
Q 017118 283 GCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQA 362 (377)
Q Consensus 283 ~~~~L~nK~P~wne~~~~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~d~~~iiLQFGKv~kd~F~mD~~yPlS~~QA 362 (377)
...+|.|..-. +=..+.+.+.-+=|.|..... .++.-+|-+--+.++.|.+||+-.||++||
T Consensus 273 ~L~VL~n~~~~----------~~~~~~~~~~~~~feLf~QG~--------~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQA 334 (346)
T PF12043_consen 273 PLRVLSNQSQN----------SKKSSSSKESSHPFELFVQGS--------KEEDPAFSMVNVKEGLYSVEFHSSLSPLQA 334 (346)
T ss_pred CeEEeCCCCcc----------ccccccccccCCceeeeeccc--------ccCCCceEEEEccCCeEEEEecCcchHHHH
Confidence 56777765221 112455556777788875421 233378999999999999999999999999
Q ss_pred HHHHHHhccc
Q 017118 363 FAICLTSFGT 372 (377)
Q Consensus 363 FaI~Lssfdt 372 (377)
|+||++-+++
T Consensus 335 FSiciA~lh~ 344 (346)
T PF12043_consen 335 FSICIAVLHS 344 (346)
T ss_pred HHHhheeeec
Confidence 9999987764
No 5
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.10 E-value=1.1e-06 Score=63.12 Aligned_cols=37 Identities=32% Similarity=0.629 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (377)
Q Consensus 57 wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~ 101 (377)
|..||+|+|.+|+..+ |. +|++.|+.|||+|++++.+
T Consensus 1 i~~LP~Eil~~If~~L-------~~-~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYL-------DP-RDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp CCCS-HHHHHHHHTTS--------H-HHHHHHTTSSHHHHHHHTC
T ss_pred ChHhHHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHCC
Confidence 7899999999999999 33 3899999999999998843
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.72 E-value=4.9e-06 Score=59.33 Aligned_cols=39 Identities=26% Similarity=0.520 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHHH
Q 017118 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI 102 (377)
Q Consensus 56 ~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~~ 102 (377)
.|.+||+|++.+|+.+++- .++++|+.||+.|+.+++..
T Consensus 2 ~~~~LP~~il~~Il~~l~~--------~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDP--------KDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-H--------HHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcH--------HHHHHHHHHhhHHHHHHcCC
Confidence 4789999999999999944 46999999999999998764
No 7
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.67 E-value=1.8e-05 Score=80.59 Aligned_cols=41 Identities=24% Similarity=0.528 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHHH
Q 017118 55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI 102 (377)
Q Consensus 55 ~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~~ 102 (377)
..|+.||+|||+.|..|| |++.|++.-++||++||..+...
T Consensus 2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhcccc
Confidence 359999999999999999 99999999999999999987753
No 8
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.57 E-value=1.6e-05 Score=54.20 Aligned_cols=34 Identities=29% Similarity=0.655 Sum_probs=30.9
Q ss_pred CCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118 60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (377)
Q Consensus 60 lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~ 101 (377)
||+|++.+|+.+| +. +|+.+|+.|||+||.++.+
T Consensus 1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence 7999999999999 55 7999999999999998865
No 9
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=92.04 E-value=0.056 Score=54.67 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=33.3
Q ss_pred CCCCCC---CCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHH
Q 017118 54 SGSWAG---LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (377)
Q Consensus 54 ~~~wa~---lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~ 100 (377)
|++|-+ ||+|+|-.||+++=.+.- .-++.+.||+|||.|+-.++
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~~---d~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSLL---DLRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhhc---chhhHHHhHhhHHHHHHHHc
Confidence 677765 999999999999943221 23678899999999776554
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=85.61 E-value=0.21 Score=50.78 Aligned_cols=68 Identities=24% Similarity=0.395 Sum_probs=52.8
Q ss_pred CCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH--HhcCCCccCCCCCCccccCCCCCCCc-eEEE
Q 017118 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD--IVKSPFLSGKITFPSCLKQPGPREFP-HQCL 131 (377)
Q Consensus 56 ~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~--~v~~p~~~g~~tfp~sL~qPgPrd~~-iQC~ 131 (377)
.|..||.|+|.+|+.-| .-++...-+.||++|..++.+ .-.....-||---|+.|-|=.-|+.. ++|-
T Consensus 97 ~~~slpDEill~IFs~L--------~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rla 167 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCL--------CKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLA 167 (419)
T ss_pred CcccCCHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcc
Confidence 39999999999999876 568999999999999998865 23445566776677777776677754 4664
No 11
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=36.52 E-value=8.7 Score=41.39 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=35.3
Q ss_pred CCCCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHHH
Q 017118 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI 102 (377)
Q Consensus 53 ~~~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~~ 102 (377)
+..-=..||.||.--|+.-| +. ++...|++||+.|+.++..=
T Consensus 104 ~~dfi~~lp~el~~~il~~L-------d~-~~l~~~~~v~~~w~~~~~~~ 145 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFL-------DG-RDLLAVRQVCRNWNKLLDDD 145 (537)
T ss_pred ccchhhcccchhcccccccC-------CH-HHhhhhhhhcchhhhhhhcc
Confidence 55556779999999999999 65 67999999999999987543
No 12
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=36.10 E-value=15 Score=38.94 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHHHhcCCCccCCCCCCcccc
Q 017118 58 AGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119 (377)
Q Consensus 58 a~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~~v~~p~~~g~~tfp~sL~ 119 (377)
-.|||||+..|+.-|.- +...-||.||+.|--.+-+.+-= +.-.-.||+.-+.
T Consensus 73 ~~LPpEl~lkvFS~LDt--------ksl~r~a~~c~~~n~~AlD~~~~-q~idL~t~~rDv~ 125 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDT--------KSLCRAAQCCTMWNKLALDGSCW-QHIDLFTFQRDVD 125 (483)
T ss_pred ccCCHHHHHHHHHHHhH--------HHHHHHHHHHHHhhhhhhccccc-eeeehhcchhcCC
Confidence 36999999999999932 45667999999999988875522 2222356665543
No 13
>PF11038 DGF-1_5: Dispersed gene family protein 1 of Trypanosoma cruzi region 5; InterPro: IPR021282 Dispersed gene family protein 1 of Trypanosoma cruzi is likely to be highly expressed, and is expressed from the sub-telomeric region []. However, its function is not known. This entry represents domain 5 on this protein, found downstream the C-terminal domain.
Probab=31.51 E-value=68 Score=31.05 Aligned_cols=99 Identities=26% Similarity=0.362 Sum_probs=59.3
Q ss_pred cceeeecccchhHHHHHHHHhcCCCccCCCCC-CccccCCC----CCCCce-EEEEEeeecCceeEEeeecCCCCCCCCe
Q 017118 83 QNVVACACVCKRWREITKDIVKSPFLSGKITF-PSCLKQPG----PREFPH-QCLIRRNKKTSTFYLYLALTPSFSEKGK 156 (377)
Q Consensus 83 ~~vv~ca~vc~~Wr~~~~~~v~~p~~~g~~tf-p~sL~qPg----Prd~~i-QC~I~R~K~~~tY~LYl~l~~~~~d~gk 156 (377)
+-.|+|+..|| |. +.|+.---++| |.+++||- |.+.++ .-.-.||+.++. +.
T Consensus 20 ~~~va~~~~~r-w~-------rd~~l~~~l~f~~~s~~q~~~~~~~~ge~lrnatw~rn~tnp~--------------~v 77 (278)
T PF11038_consen 20 KLTVALPPPFR-WA-------RDPQLGTHLTFCRCSRMQPNGYSGPWGEMLRNATWVRNATNPS--------------TV 77 (278)
T ss_pred ceEEecCCCcc-cc-------cCCCcCcceEEEEecccCCccCCCchHhhhccCeeeecCCCCc--------------ee
Confidence 46799999999 75 46888888887 77899984 666544 456667766542 22
Q ss_pred eEEEEeccccCCceeEEEeccCCCccCCc-cceeeeecccceecEEEEecCCCC
Q 017118 157 FLLAARRYRRGAHSEYIISLDAGDLSQGS-NAYVGKLSSDFLGTNFTIYDSRPP 209 (377)
Q Consensus 157 fLLaArK~rr~~tSnYiISld~~dlsr~s-~~yvGKLRSNflGTkF~IYD~gpp 209 (377)
.=|++-+- -.|.|.+|.+.+-+-. ....|--+.-++| .|||-.+-||
T Consensus 78 lelavp~~-----~~yfig~de~ivi~~~~~av~ggc~gvl~g-sfti~sntp~ 125 (278)
T PF11038_consen 78 LELAVPVH-----RGYFIGMDETIVIRCDAHAVFGGCKGVLLG-SFTINSNTPP 125 (278)
T ss_pred EEEEEecc-----CceEEecCceEEEEecchhhcCCcceEEEe-eEEecCCCcH
Confidence 33444332 2477777776544322 1222222223334 5888877654
No 14
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=23.46 E-value=74 Score=27.48 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHHHhc
Q 017118 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVK 104 (377)
Q Consensus 57 wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~~v~ 104 (377)
...+||.+.+ ++.+| |... |.|+|.|.+.++++++
T Consensus 84 ~~~~~~~~~~-lld~L-------~~~P-----A~v~~~~~~~~~~~~~ 118 (120)
T PRK13890 84 PRSLPPGFER-VAAVL-------PEHQ-----AFIVKKWGEATRKKLR 118 (120)
T ss_pred CCCCChHHHH-HHHHc-------CCcc-----HHHHHHHHHHHHHHHc
Confidence 4578998665 88888 3332 5799999999988875
No 15
>PF14642 FAM47: FAM47 family
Probab=22.35 E-value=48 Score=32.92 Aligned_cols=37 Identities=24% Similarity=0.546 Sum_probs=28.1
Q ss_pred CCCCCHHHHHHHHhhhhcc---CCCCCcccceeeecccchhHHHHHHHHh
Q 017118 57 WAGLLPELLGEIIRRVETT---EDSWPHRQNVVACACVCKRWREITKDIV 103 (377)
Q Consensus 57 wa~lppell~~i~~r~e~~---~~~wp~r~~vv~ca~vc~~Wr~~~~~~v 103 (377)
-..||||||.+|+.=|+-. |+.| +-|.-++..+++-.
T Consensus 138 eE~mPpdLll~VLevLDPerkLed~w----------a~cE~~ek~t~ept 177 (258)
T PF14642_consen 138 EEDMPPDLLLKVLEVLDPERKLEDTW----------AYCEGREKTTKEPT 177 (258)
T ss_pred cccCCHHHHHHHHhccCcccchhhhh----------hhhcccccccCCCc
Confidence 3569999999999977533 5667 66788888888743
Done!