Query 017118
Match_columns 377
No_of_seqs 235 out of 374
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 09:13:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017118.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017118hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 1.1E-87 3.6E-92 647.9 23.9 235 114-377 25-276 (276)
2 3c5n_A Tubby-related protein 1 100.0 5.2E-85 1.8E-89 620.3 23.4 227 116-371 3-246 (246)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 98.3 2.1E-07 7.3E-12 67.1 2.3 41 53-101 5-45 (53)
4 2ast_B S-phase kinase-associat 97.3 6.8E-05 2.3E-09 69.5 1.9 40 53-100 5-44 (336)
5 2e31_A FBS1, F-box only protei 97.2 0.00013 4.4E-09 70.9 2.5 40 54-101 48-88 (297)
6 2p1m_B Transport inhibitor res 97.1 9.2E-05 3.2E-09 73.7 1.1 42 53-101 2-43 (594)
7 2ovr_B FBW7, F-BOX/WD repeat p 95.8 0.0032 1.1E-07 59.9 2.0 40 53-100 15-54 (445)
8 3v7d_B Cell division control p 95.7 0.0014 4.9E-08 62.3 -0.7 41 53-101 11-51 (464)
9 3l2o_B F-box only protein 4; s 95.2 0.0023 7.9E-08 62.6 -1.2 38 56-101 4-41 (312)
10 3ogk_B Coronatine-insensitive 94.8 0.0068 2.3E-07 60.4 0.9 38 57-101 13-50 (592)
11 1p22_A F-BOX/WD-repeat protein 94.6 0.0064 2.2E-07 58.0 0.2 41 53-101 7-51 (435)
12 1zxu_A AT5G01750 protein; PFAM 21.7 3.4E+02 0.012 23.8 8.4 25 238-262 166-191 (217)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=1.1e-87 Score=647.90 Aligned_cols=235 Identities=41% Similarity=0.681 Sum_probs=183.9
Q ss_pred CCccccCCCCCCCceEEEEEeeecC------ceeEEeeecCCCCCCCCeeEEEEeccccCCceeEEEeccCCCccCCccc
Q 017118 114 FPSCLKQPGPREFPHQCLIRRNKKT------STFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNA 187 (377)
Q Consensus 114 fp~sL~qPgPrd~~iQC~I~R~K~~------~tY~LYl~l~~~~~d~gkfLLaArK~rr~~tSnYiISld~~dlsr~s~~ 187 (377)
+..||+||+|+|++|||+|+|||+| ++|||||+ .++++|||||||+++++++||+||+|++||+|++++
T Consensus 25 ~~~fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~ 99 (276)
T 2fim_A 25 PREFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGEN 99 (276)
T ss_dssp CTTGGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC------C
T ss_pred HHHHhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcccCCce
Confidence 5569999999999999999999987 69999996 477899999999999999999999999999999999
Q ss_pred eeeeecccceecEEEEecCCCCCCCCCCCCCCcccccccccccCCCCCcceeEEEEEEeecccCCCCCceeEEEeeCCCC
Q 017118 188 YVGKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSS 267 (377)
Q Consensus 188 yvGKLRSNflGTkF~IYD~gpp~~~~~~~~~r~~r~~~~k~vsp~v~~g~~ela~V~Ye~Nvlg~rGPRrM~v~i~~P~~ 267 (377)
|||||||||+||+|+|||+|++.+ +..+|+++.+++|||+|.||+|++|++|||+|+|+||....
T Consensus 100 yvGKLrSNflGtkF~iyD~G~~p~---------------~~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~~ 164 (276)
T 2fim_A 100 FIGKLRSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMSA 164 (276)
T ss_dssp EEEEEEECSSSSEEEEECSSBCGG---------------GCTTSCGGGBCCEEEEEEEC---------CCEEEEEECBCT
T ss_pred EEEEEEEccCCCEEEEECCCCCcc---------------cccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCccc
Confidence 999999999999999999984322 12356677889999999999999999999999999986432
Q ss_pred CCc--------cchhhhhhc---ccCCeeEeeeCCCccccCCceEEeccCCcccccccceeEEEeccCCCCCCCCCCCCe
Q 017118 268 GET--------ADDIKMKKA---ENAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEET 336 (377)
Q Consensus 268 ~e~--------~~~~~~~~~---~~~~~~~L~nK~P~wne~~~~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~d~~~ 336 (377)
+.. .++....+. ..++.++|+||+|+|||++|||||||+||||+|||||||||+++ |++.
T Consensus 165 ~~~~~~~~p~~~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~aSvKNFQLv~~~---------d~~~ 235 (276)
T 2fim_A 165 ENERVPIRPRNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHAD---------DPDY 235 (276)
T ss_dssp TSCBCCCCCSSTTCSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSCCTTCEEEECTT---------CTTS
T ss_pred CCCEecccCCCcccccchhhhccCCcceEeeeccCCcccccCCEEEEecCCeeeccccceEEEEecC---------CCCE
Confidence 111 111122221 22378999999999999999999999999999999999999875 5789
Q ss_pred EEEEeeeecCCeeEEEccCCCCHHHHHHHHHHhcccccccC
Q 017118 337 VLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 377 (377)
Q Consensus 337 iiLQFGKv~kd~F~mD~~yPlS~~QAFaI~LssfdtKlACE 377 (377)
||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus 236 ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace 276 (276)
T 2fim_A 236 IVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276 (276)
T ss_dssp CSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred EEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence 99999999999999999999999999999999999999998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=5.2e-85 Score=620.34 Aligned_cols=227 Identities=40% Similarity=0.677 Sum_probs=187.8
Q ss_pred ccccCCCCCCCceEEEEEeeecC------ceeEEeeecCCCCCCCCeeEEEEeccccCCceeEEEeccCCCccCCcccee
Q 017118 116 SCLKQPGPREFPHQCLIRRNKKT------STFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYV 189 (377)
Q Consensus 116 ~sL~qPgPrd~~iQC~I~R~K~~------~tY~LYl~l~~~~~d~gkfLLaArK~rr~~tSnYiISld~~dlsr~s~~yv 189 (377)
.||+||+|+|++|||+|+|||+| ++||||++ .++++|||||||++++++|||+||+|++||+|++++||
T Consensus 3 ~fl~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yv 77 (246)
T 3c5n_A 3 EFVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFI 77 (246)
T ss_dssp TGGGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC------CEE
T ss_pred hHcCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEE
Confidence 58999999999999999999998 58999986 35678999999999999999999999999999999999
Q ss_pred eeecccceecEEEEecCCCCCCCCCCCCCCcccccccccccCCCCCcceeEEEEEEeecccCCCCCceeEEEeeCCCCCC
Q 017118 190 GKLSSDFLGTNFTIYDSRPPHNGAKPSSSRGSRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCTVKCPSSGE 269 (377)
Q Consensus 190 GKLRSNflGTkF~IYD~gpp~~~~~~~~~r~~r~~~~k~vsp~v~~g~~ela~V~Ye~Nvlg~rGPRrM~v~i~~P~~~e 269 (377)
|||||||+||+|+|||+|++.+ +..+|+++.+++|||+|.||+|++|++|||+|+|+||.+..+.
T Consensus 78 GKLrsNf~Gt~F~iyD~g~~p~---------------~~~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~~~~~ 142 (246)
T 3c5n_A 78 GKLRSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMSAEN 142 (246)
T ss_dssp EEEEECSSSSEEEEECSCBCGG---------------GCTTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECBCTTS
T ss_pred EEEEEccCCCEEEEECCCCCcc---------------cccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcccCC
Confidence 9999999999999999984322 1235667788999999999999999999999999998743211
Q ss_pred c--------cchhhhhhc---ccCCeeEeeeCCCccccCCceEEeccCCcccccccceeEEEeccCCCCCCCCCCCCeEE
Q 017118 270 T--------ADDIKMKKA---ENAGCTILRNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVL 338 (377)
Q Consensus 270 ~--------~~~~~~~~~---~~~~~~~L~nK~P~wne~~~~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~d~~~ii 338 (377)
. .++..+.+. ..++.++|+||+|+|||++|||||||+||||+|||||||||+++ |++.||
T Consensus 143 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~aSvKNFqLv~~~---------~~~~iv 213 (246)
T 3c5n_A 143 ERVPIRPRNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHAD---------DPDYIV 213 (246)
T ss_dssp CBCCCCCSSTTSSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTSCCBCCTTCEEEEBTT---------BTTSCS
T ss_pred CEeeccCCCccccchhhhhccCCcceEEEeccCCcccccCCEEEEecCCeeeccccceEEEEecC---------CCCEEE
Confidence 1 111122221 12378999999999999999999999999999999999999875 568999
Q ss_pred EEeeeecCCeeEEEccCCCCHHHHHHHHHHhcc
Q 017118 339 LQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFG 371 (377)
Q Consensus 339 LQFGKv~kd~F~mD~~yPlS~~QAFaI~Lssfd 371 (377)
||||||++|+|||||+|||||||||||||||||
T Consensus 214 lqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfD 246 (246)
T 3c5n_A 214 LQFGRVAEDAFTLDYRYPLCALQAFAIALSSFD 246 (246)
T ss_dssp EEEEEEETTEEEEEEETTCCHHHHHHHHHHTCC
T ss_pred EEEEEecCCeEEEEecCCCCHHHHHHHHHHcCC
Confidence 999999999999999999999999999999998
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.30 E-value=2.1e-07 Score=67.07 Aligned_cols=41 Identities=32% Similarity=0.548 Sum_probs=33.6
Q ss_pred CCCCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (377)
Q Consensus 53 ~~~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~ 101 (377)
++..|+.||+|+|..|+.+| | .++++.|+.|||+|+.++.+
T Consensus 5 ~~~~~~~LP~eil~~I~~~L-------~-~~dl~~~~~Vck~w~~~~~~ 45 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCL-------C-LPELLKVSGVCKRWYRLASD 45 (53)
T ss_dssp ----CCSSCHHHHHHHHTTS-------C-GGGHHHHHTTCHHHHHHHTC
T ss_pred CCCCHHHCCHHHHHHHHHcC-------C-HHHHHHHHHHHHHHHHHhCC
Confidence 45679999999999999999 4 47899999999999998753
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.29 E-value=6.8e-05 Score=69.50 Aligned_cols=40 Identities=30% Similarity=0.519 Sum_probs=34.5
Q ss_pred CCCCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHH
Q 017118 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (377)
Q Consensus 53 ~~~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~ 100 (377)
++..|.+||+|+|..|+.+| |.+ +++.|+.|||+|++++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L-------~~~-d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCL-------CLP-ELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTS-------CHH-HHHHTTSSCHHHHHHHT
T ss_pred ccCChhhCCHHHHHHHHHhC-------CHH-HHHHHHHHHHHHHHHhc
Confidence 46789999999999999999 544 88999999999999884
No 5
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.18 E-value=0.00013 Score=70.93 Aligned_cols=40 Identities=33% Similarity=0.628 Sum_probs=34.7
Q ss_pred CCCCCCCCHHHHHHHHhhhhccCCCCCccccee-eecccchhHHHHHHH
Q 017118 54 SGSWAGLLPELLGEIIRRVETTEDSWPHRQNVV-ACACVCKRWREITKD 101 (377)
Q Consensus 54 ~~~wa~lppell~~i~~r~e~~~~~wp~r~~vv-~ca~vc~~Wr~~~~~ 101 (377)
......||+|||.+|+.|| |.+ +++ .|++|||+||.++.+
T Consensus 48 ~~~~~~LP~ell~~Il~~L-------p~~-~L~~r~~~VCk~Wr~l~~~ 88 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAEL-------PAT-ELVQACRLVCLRWKELVDG 88 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTS-------CHH-HHHHTGGGTCHHHHHHHTS
T ss_pred ccChhhCCHHHHHHHHHcC-------CHH-HHHHHHHHHhHHHHHHhcC
Confidence 3457889999999999999 874 788 999999999998753
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.14 E-value=9.2e-05 Score=73.73 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=31.2
Q ss_pred CCCCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (377)
Q Consensus 53 ~~~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~ 101 (377)
+...|+.||+|+|..|+.+| |..+++++|+.|||+|+++...
T Consensus 2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~ 43 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW 43 (594)
T ss_dssp --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence 56789999999999999999 8778999999999999999443
No 7
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.75 E-value=0.0032 Score=59.94 Aligned_cols=40 Identities=18% Similarity=0.304 Sum_probs=35.0
Q ss_pred CCCCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHH
Q 017118 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK 100 (377)
Q Consensus 53 ~~~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~ 100 (377)
...-.+.||+||+..|+..| + .++++.|+.|||+|++++.
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l-------~-~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFL-------E-PKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTS-------C-HHHHHHHTTSCHHHHHHHT
T ss_pred cCChhHHCCHHHHHHHHHhC-------C-HHHHHHHHHHhHHHHhhcC
Confidence 56678999999999999999 4 3689999999999999874
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=95.69 E-value=0.0014 Score=62.26 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=35.8
Q ss_pred CCCCCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118 53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (377)
Q Consensus 53 ~~~~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~ 101 (377)
+..-++.||+|+|..|+..| |. ++++.|+.|||.|++++.+
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred ccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence 55668889999999999999 54 5899999999999998764
No 9
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.17 E-value=0.0023 Score=62.65 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=33.5
Q ss_pred CCCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118 56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (377)
Q Consensus 56 ~wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~ 101 (377)
-|.+||.|++..|+..| ++ +|+..||.|||.||.++.+
T Consensus 4 ~l~~LP~ei~l~IlsfL-------~p-~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFL-------SP-HDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp HHHHSCHHHHHHHHHTS-------CH-HHHHHHHTTCHHHHHHHTC
T ss_pred hhHhCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHhcc
Confidence 37789999999999999 33 5799999999999999865
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.77 E-value=0.0068 Score=60.37 Aligned_cols=38 Identities=13% Similarity=0.485 Sum_probs=33.6
Q ss_pred CCCCCHHHHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118 57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (377)
Q Consensus 57 wa~lppell~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~ 101 (377)
.+.||+|+|..|+.+| +..+++++|+.|||+|+.+...
T Consensus 13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~~ 50 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDSE 50 (592)
T ss_dssp CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhhc
Confidence 4589999999999999 5678999999999999999543
No 11
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=94.62 E-value=0.0064 Score=57.97 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=34.1
Q ss_pred CCCCCCCCCHH----HHHHHHhhhhccCCCCCcccceeeecccchhHHHHHHH
Q 017118 53 SSGSWAGLLPE----LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101 (377)
Q Consensus 53 ~~~~wa~lppe----ll~~i~~r~e~~~~~wp~r~~vv~ca~vc~~Wr~~~~~ 101 (377)
+..--+.||+| ||..|+..|+. +++..|+.|||+|++++.+
T Consensus 7 ~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 7 QRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred hcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence 44556779999 99999999933 6889999999999988853
No 12
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=21.72 E-value=3.4e+02 Score=23.82 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=11.4
Q ss_pred eeEEEEEEeecccC-CCCCceeEEEe
Q 017118 238 FEVGQVSYKFNLLK-SRGPRRMVCTV 262 (377)
Q Consensus 238 ~ela~V~Ye~Nvlg-~rGPRrM~v~i 262 (377)
..||.|+=+.++-+ ..|--...+.+
T Consensus 166 ~~Va~I~kk~~~~~~~~~~D~y~l~V 191 (217)
T 1zxu_A 166 AIVAQMHRKHTVQSVFLGKDNFSVTV 191 (217)
T ss_dssp CEEEEEEEC--------CBCSEEEEE
T ss_pred EEEEEEEeeeeccccccCCcEEEEEE
Confidence 56888887644210 12334566555
Done!