Your job contains 1 sequence.
>017119
MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDR
VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC
NRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTV
GGPVPPRPYANGAASGPISAVRPPPPPPQAAAFPPMQVAGQAAWQGQPQHIGQGVPQPVM
PPPMQFRPPPNMPPPPPPQLASAMQRPPPQPMGMGAQPPVWRQPPPPPQQLLGRPPMPHM
SMPPPPPPQAPPPPPSG
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 017119
(377 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2046298 - symbol:emb2444 "embryo defective 244... 1148 1.6e-116 1
UNIPROTKB|H9L019 - symbol:SF3B4 "Uncharacterized protein"... 892 3.0e-91 2
UNIPROTKB|E2R5T2 - symbol:SF3B4 "Uncharacterized protein"... 895 1.1e-89 1
MGI|MGI:109580 - symbol:Sf3b4 "splicing factor 3b, subuni... 895 1.1e-89 1
RGD|1309667 - symbol:Sf3b4 "splicing factor 3b, subunit 4... 895 1.1e-89 1
UNIPROTKB|F1SDG0 - symbol:SF3B4 "Uncharacterized protein"... 895 1.1e-89 1
UNIPROTKB|F1MWR2 - symbol:SF3B4 "Uncharacterized protein"... 895 1.1e-89 1
UNIPROTKB|Q15427 - symbol:SF3B4 "Splicing factor 3B subun... 895 1.1e-89 1
ZFIN|ZDB-GENE-020419-22 - symbol:sf3b4 "splicing factor 3... 884 1.6e-88 1
FB|FBgn0015818 - symbol:Spx "Spliceosomal protein on the ... 725 1.4e-86 3
WB|WBGene00004723 - symbol:sap-49 species:6239 "Caenorhab... 817 1.2e-83 2
UNIPROTKB|Q09442 - symbol:sap-49 "Splicing factor 3B subu... 817 1.2e-83 2
UNIPROTKB|Q5SZ64 - symbol:SF3B4 "Splicing factor 3B subun... 742 1.7e-73 1
UNIPROTKB|F1MN26 - symbol:F1MN26 "Uncharacterized protein... 708 5.3e-73 2
ASPGD|ASPL0000000406 - symbol:AN6501 species:162425 "Emer... 666 2.0e-65 1
POMBASE|SPAC31G5.01 - symbol:sap49 "U2 snRNP-associated R... 654 3.7e-64 1
UNIPROTKB|G4NH06 - symbol:MGG_03973 "Splicing factor 3B s... 646 2.6e-63 1
GENEDB_PFALCIPARUM|PF14_0194 - symbol:PF14_0194 "spliceos... 638 1.8e-62 1
UNIPROTKB|Q8ILQ0 - symbol:PF14_0194 "Spliceosome-associat... 638 1.8e-62 1
DICTYBASE|DDB_G0267714 - symbol:sf3b4 "splicing factor 3B... 604 7.3e-59 1
CGD|CAL0006311 - symbol:orf19.2261 species:5476 "Candida ... 271 1.1e-48 2
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 345 3.9e-33 2
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 328 2.2e-32 2
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 331 1.2e-31 2
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 331 1.9e-31 2
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 331 1.9e-31 2
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 331 1.9e-31 2
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 331 1.9e-31 2
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 331 1.9e-31 2
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 327 5.2e-31 2
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 325 6.9e-31 2
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 331 7.0e-31 2
SGD|S000005846 - symbol:HSH49 "U2-snRNP associated splici... 338 1.1e-30 1
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 322 4.2e-30 2
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 339 5.6e-30 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 334 1.6e-29 1
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 312 1.8e-29 2
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 317 2.6e-29 2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 331 3.5e-29 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 331 3.6e-29 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 310 6.1e-29 2
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 328 7.3e-29 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 327 9.2e-29 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 317 1.9e-28 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 326 2.0e-28 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 322 3.0e-28 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 322 3.2e-28 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 322 3.2e-28 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 322 3.5e-28 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 322 3.5e-28 1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 287 4.7e-28 2
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 312 6.4e-28 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 318 7.8e-28 1
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 310 1.0e-27 1
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 310 1.0e-27 1
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 317 1.0e-27 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 317 1.1e-27 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 317 1.1e-27 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 317 1.1e-27 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 317 1.3e-27 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 316 1.4e-27 1
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 315 2.4e-27 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 314 2.6e-27 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 306 2.8e-27 1
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 312 4.0e-27 1
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 286 4.0e-27 2
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 312 4.0e-27 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 311 5.1e-27 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 311 5.8e-27 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 311 5.9e-27 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 310 6.2e-27 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 302 7.3e-27 1
UNIPROTKB|G3MZ94 - symbol:PABPC1L2A "Uncharacterized prot... 302 7.3e-27 1
UNIPROTKB|F1RPL9 - symbol:LOC100623240 "Uncharacterized p... 302 7.3e-27 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 308 8.1e-27 1
UNIPROTKB|G3MYW4 - symbol:PABPC1L2A "Uncharacterized prot... 300 1.2e-26 1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 298 1.9e-26 1
UNIPROTKB|Q5JQF8 - symbol:PABPC1L2A "Polyadenylate-bindin... 298 1.9e-26 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 297 2.5e-26 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 297 2.5e-26 1
RGD|1566367 - symbol:Pabpc1l2a "poly(A) binding protein, ... 297 2.5e-26 1
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 304 2.8e-26 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 295 4.0e-26 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 304 4.3e-26 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 293 6.6e-26 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 293 6.6e-26 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 300 7.2e-26 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 264 3.5e-25 2
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 286 3.6e-25 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 285 6.8e-24 1
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 285 6.8e-24 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 274 2.1e-23 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 269 2.3e-23 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 269 2.3e-23 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 269 2.3e-23 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 268 3.9e-23 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 263 1.0e-22 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 263 1.0e-22 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 261 1.6e-22 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 240 3.6e-22 2
WARNING: Descriptions of 1230 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 1148 (409.2 bits), Expect = 1.6e-116, P = 1.6e-116
Identities = 225/263 (85%), Positives = 238/263 (90%)
Query: 1 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDR 60
MTTRIAPGVGANLLGQHSAERNQDAT YVG LD Q++EELLWELFVQAGPVVNVYVPKDR
Sbjct: 1 MTTRIAPGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDR 60
Query: 61 VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
VTNLHQ YGF+E+RSEEDADYAIKVLNMIKL+GKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61 VTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLD 120
Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
PDVDEKLLYDTFSAFGVI +NPKIMRDPDTGNSRGFGFISYDSFEASDAAIE+M GQYL
Sbjct: 121 PDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLS 180
Query: 181 NRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTV 240
NRQITVSYAYKKDTKGERHGTPAER+LAA NP++QKSRPHTLFA GPPS +APQ NG
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPS--SAPQVNGL- 237
Query: 241 GGPVPPRPYANGAASG-PISAVR 262
PRP+ANG+ PI A R
Sbjct: 238 -----PRPFANGSMQPVPIPAPR 255
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 892 (319.1 bits), Expect = 3.0e-91, Sum P(2) = 3.0e-91
Identities = 172/242 (71%), Positives = 197/242 (81%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
+ERNQDAT YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGP--VPPRPYANGAASG 256
HG+ AER+LAA NP SQ RPH LFA PP + P T GP PP G+
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPP-PSVPTPVVTALGPGVTPPGLPPPGSFPP 245
Query: 257 PI 258
P+
Sbjct: 246 PV 247
Score = 136 (52.9 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 31/100 (31%), Positives = 54/100 (54%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQG 67
+ N H+ + A ++GNLDP++ E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-SQDKK 106
Y F+ F S + +D AI+ +N L +PI V+ A +D K
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 54 (24.1 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 226 GPPSL-QNAPQANGTVGGPVPPRPYANGAASGP 257
GPP + Q+ P G+ GG PPRP GP
Sbjct: 310 GPPGMGQHHPGPPGS-GGQPPPRPPPGMPHPGP 341
Score = 40 (19.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 219 PHTLFASGPPSLQNAPQANGTVGGPVPPRP 248
PH +GPP P G P+PPRP
Sbjct: 377 PHGY--NGPPR----PPPYGYQRVPLPPRP 400
Score = 37 (18.1 bits), Expect = 3.0e-91, Sum P(2) = 3.0e-91
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 243 PVPPRPYANGAASGPISA 260
P PP P GA P A
Sbjct: 262 PPPPMPPGAGAPGPPTGA 279
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 169/229 (73%), Positives = 195/229 (85%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
+ERNQDAT YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQ-ANGTVGGPVPP 246
HG+ AER+LAA NP SQ RPH LFA PP +AP ++G +PP
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPP 234
Score = 136 (52.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 31/100 (31%), Positives = 54/100 (54%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQG 67
+ N H+ + A ++GNLDP++ E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-SQDKK 106
Y F+ F S + +D AI+ +N L +PI V+ A +D K
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 51 (23.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 219 PHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISAVR 262
PH + GPP L P +G G P PP PY G GP+ R
Sbjct: 370 PHGM--RGPPPLM--PP-HGYTGPPRPP-PY--GYQRGPLPPPR 405
Score = 51 (23.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 24/75 (32%), Positives = 28/75 (37%)
Query: 199 HGTPAERILAANNPSSQKSRPHTLFASGPP-----SLQNA---------PQAN--GTVGG 242
HG P+ A +P S PH SG P +Q A P A G+ GG
Sbjct: 273 HGPPSAGTPGAGHPGHGHSHPHPFPPSGMPHPGMSQMQLAHHGPHGLGHPHAGPPGS-GG 331
Query: 243 PVPPRPYANGAASGP 257
PPRP GP
Sbjct: 332 QPPPRPPPGMPHPGP 346
Score = 41 (19.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 18/71 (25%), Positives = 24/71 (33%)
Query: 187 SYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 246
S+ + G H ++ LA + P PH +GPP P G P P
Sbjct: 291 SHPHPFPPSGMPHPGMSQMQLAHHGPHGL-GHPH----AGPPGSGGQPPPRPPPGMPHPG 345
Query: 247 RPYANGAASGP 257
P GP
Sbjct: 346 PPPMGLPPRGP 356
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 169/229 (73%), Positives = 195/229 (85%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
+ERNQDAT YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQ-ANGTVGGPVPP 246
HG+ AER+LAA NP SQ RPH LFA PP +AP ++G +PP
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPP 234
Score = 136 (52.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 31/100 (31%), Positives = 54/100 (54%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQG 67
+ N H+ + A ++GNLDP++ E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-SQDKK 106
Y F+ F S + +D AI+ +N L +PI V+ A +D K
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 51 (23.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 219 PHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISAVR 262
PH + GPP L P +G G P PP PY G GP+ R
Sbjct: 370 PHGM--RGPPPLM--PP-HGYTGPPRPP-PY--GYQRGPLPPPR 405
Score = 50 (22.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 24/75 (32%), Positives = 27/75 (36%)
Query: 199 HGTPAERILAANNPSSQKSRPHTLFASGPP-----SLQNA---------PQAN--GTVGG 242
HG PA A +P S PH G P +Q A P A G+ GG
Sbjct: 273 HGPPAAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGS-GG 331
Query: 243 PVPPRPYANGAASGP 257
PPRP GP
Sbjct: 332 QPPPRPPPGMPHPGP 346
Score = 41 (19.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/62 (27%), Positives = 21/62 (33%)
Query: 196 GERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAAS 255
G H ++ LA + P PH +GPP P G P P P
Sbjct: 300 GMPHPGMSQMQLAHHGPHGL-GHPH----AGPPGSGGQPPPRPPPGMPHPGPPPMGMPPR 354
Query: 256 GP 257
GP
Sbjct: 355 GP 356
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 169/229 (73%), Positives = 195/229 (85%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
+ERNQDAT YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQ-ANGTVGGPVPP 246
HG+ AER+LAA NP SQ RPH LFA PP +AP ++G +PP
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPP 234
Score = 136 (52.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 31/100 (31%), Positives = 54/100 (54%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQG 67
+ N H+ + A ++GNLDP++ E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-SQDKK 106
Y F+ F S + +D AI+ +N L +PI V+ A +D K
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 51 (23.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 219 PHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISAVR 262
PH + GPP L P +G G P PP PY G GP+ R
Sbjct: 370 PHGM--RGPPPLM--PP-HGYTGPPRPP-PY--GYQRGPLPPPR 405
Score = 50 (22.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 24/75 (32%), Positives = 27/75 (36%)
Query: 199 HGTPAERILAANNPSSQKSRPHTLFASGPP-----SLQNA---------PQAN--GTVGG 242
HG PA A +P S PH G P +Q A P A G+ GG
Sbjct: 273 HGPPAAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGS-GG 331
Query: 243 PVPPRPYANGAASGP 257
PPRP GP
Sbjct: 332 QPPPRPPPGMPHPGP 346
Score = 41 (19.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/62 (27%), Positives = 21/62 (33%)
Query: 196 GERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAAS 255
G H ++ LA + P PH +GPP P G P P P
Sbjct: 300 GMPHPGMSQMQLAHHGPHGL-GHPH----AGPPGSGGQPPPRPPPGMPHPGPPPMGMPPR 354
Query: 256 GP 257
GP
Sbjct: 355 GP 356
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 169/229 (73%), Positives = 195/229 (85%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
+ERNQDAT YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQ-ANGTVGGPVPP 246
HG+ AER+LAA NP SQ RPH LFA PP +AP ++G +PP
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPP 234
Score = 136 (52.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 31/100 (31%), Positives = 54/100 (54%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQG 67
+ N H+ + A ++GNLDP++ E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-SQDKK 106
Y F+ F S + +D AI+ +N L +PI V+ A +D K
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 51 (23.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 219 PHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISAVR 262
PH + GPP L P +G G P PP PY G GP+ R
Sbjct: 370 PHGM--RGPPPLM--PP-HGYTGPPRPP-PY--GYQRGPLPPPR 405
Score = 48 (22.0 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 23/75 (30%), Positives = 28/75 (37%)
Query: 199 HGTPAERILAANNPSSQKSRPHTLFASGPP-----SLQNA---------PQAN--GTVGG 242
HG P+ A +P+ S PH G P +Q A P A G+ GG
Sbjct: 273 HGPPSAGTPGAGHPAHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGS-GG 331
Query: 243 PVPPRPYANGAASGP 257
PPRP GP
Sbjct: 332 QPPPRPPPGMPHPGP 346
Score = 41 (19.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/62 (27%), Positives = 21/62 (33%)
Query: 196 GERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAAS 255
G H ++ LA + P PH +GPP P G P P P
Sbjct: 300 GMPHPGMSQMQLAHHGPHGL-GHPH----AGPPGSGGQPPPRPPPGMPHPGPPPMGMPPR 354
Query: 256 GP 257
GP
Sbjct: 355 GP 356
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 169/229 (73%), Positives = 195/229 (85%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
+ERNQDAT YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQ-ANGTVGGPVPP 246
HG+ AER+LAA NP SQ RPH LFA PP +AP ++G +PP
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPP 234
Score = 136 (52.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 31/100 (31%), Positives = 54/100 (54%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQG 67
+ N H+ + A ++GNLDP++ E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-SQDKK 106
Y F+ F S + +D AI+ +N L +PI V+ A +D K
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 51 (23.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 219 PHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISAVR 262
PH + GPP L P +G G P PP PY G GP+ R
Sbjct: 370 PHGM--RGPPPLM--PP-HGYTGPPRPP-PY--GYQRGPLPPPR 405
Score = 47 (21.6 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 23/75 (30%), Positives = 27/75 (36%)
Query: 199 HGTPAERILAANNPSSQKSRPHTLFASGPP-----SLQNA---------PQAN--GTVGG 242
HG P+ A +P S PH G P +Q A P A G+ GG
Sbjct: 273 HGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGS-GG 331
Query: 243 PVPPRPYANGAASGP 257
PPRP GP
Sbjct: 332 QPPPRPPPGMPHPGP 346
Score = 41 (19.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/62 (27%), Positives = 21/62 (33%)
Query: 196 GERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAAS 255
G H ++ LA + P PH +GPP P G P P P
Sbjct: 300 GMPHPGMSQMQLAHHGPHGL-GHPH----AGPPGSGGQPPPRPPPGMPHPGPPPMGMPPR 354
Query: 256 GP 257
GP
Sbjct: 355 GP 356
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 169/229 (73%), Positives = 195/229 (85%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
+ERNQDAT YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQ-ANGTVGGPVPP 246
HG+ AER+LAA NP SQ RPH LFA PP +AP ++G +PP
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPP 234
Score = 136 (52.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 31/100 (31%), Positives = 54/100 (54%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQG 67
+ N H+ + A ++GNLDP++ E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-SQDKK 106
Y F+ F S + +D AI+ +N L +PI V+ A +D K
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 51 (23.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 18/44 (40%), Positives = 21/44 (47%)
Query: 219 PHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISAVR 262
PH + GPP L P +G G P PP PY G GP+ R
Sbjct: 370 PHGM--RGPPPLM--PP-HGYTGPPRPP-PY--GYQRGPLPPPR 405
Score = 47 (21.6 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 23/75 (30%), Positives = 27/75 (36%)
Query: 199 HGTPAERILAANNPSSQKSRPHTLFASGPP-----SLQNA---------PQAN--GTVGG 242
HG P+ A +P S PH G P +Q A P A G+ GG
Sbjct: 273 HGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHPHAGPPGS-GG 331
Query: 243 PVPPRPYANGAASGP 257
PPRP GP
Sbjct: 332 QPPPRPPPGMPHPGP 346
Score = 41 (19.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 17/62 (27%), Positives = 21/62 (33%)
Query: 196 GERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAAS 255
G H ++ LA + P PH +GPP P G P P P
Sbjct: 300 GMPHPGMSQMQLAHHGPHGL-GHPH----AGPPGSGGQPPPRPPPGMPHPGPPPMGMPPR 354
Query: 256 GP 257
GP
Sbjct: 355 GP 356
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 884 (316.2 bits), Expect = 1.6e-88, P = 1.6e-88
Identities = 167/232 (71%), Positives = 191/232 (82%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
+ERNQDA YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEED
Sbjct: 7 SERNQDAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGG--PVPPRP 248
HG+ AER+LAA NP SQ RPH LFA PP +G P+P P
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPPPSMPTPVMTALGAAMPIPGMP 238
Score = 136 (52.9 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 31/100 (31%), Positives = 54/100 (54%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQG 67
+ N H+ + A ++GNLDP++ E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-SQDKK 106
Y F+ F S + +D AI+ +N L +PI V+ A +D K
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Score = 49 (22.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 223 FASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISA 260
+ +GPP P G P+PPRP A GP+ A
Sbjct: 365 YGAGPP---RPPPFGFQRGPPMPPRP---PAPRGPMRA 396
Score = 46 (21.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 16/58 (27%), Positives = 20/58 (34%)
Query: 200 GTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGP 257
G P A P P + GP P + + GP PP P G +GP
Sbjct: 313 GPPGSNQPRAPPPPQMPPPPMGVPPRGPFGPPMGPPMHPGMRGPPPPMP-PPGYGAGP 369
Score = 41 (19.5 bits), Expect = 8.6e-07, Sum P(2) = 8.6e-07
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 223 FASGPPSLQNAPQANGTVGGPVP 245
F GPP P G + P P
Sbjct: 377 FQRGPPMPPRPPAPRGPMRAPAP 399
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 15/54 (27%), Positives = 20/54 (37%)
Query: 200 GTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGA 253
GTPA + P P + PP + + P G VPP P G+
Sbjct: 267 GTPAPQGGGGPPPGHPPFPPAGMH---PPGMPHMPMPPTGPPGMVPPPPGPPGS 317
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 725 (260.3 bits), Expect = 1.4e-86, Sum P(3) = 1.4e-86
Identities = 137/194 (70%), Positives = 160/194 (82%)
Query: 52 VNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG 111
VNV++PKDRVT +HQGYGFVEF SEEDADY IK++NMIKLYGKPIRVNKAS +K+LDVG
Sbjct: 59 VNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASAHQKNLDVG 118
Query: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
AN+FIGNLD +VDEKLLYDTFSAFGVI+ PKIMRDP+TG S+ F FI++ SFEASDAA+
Sbjct: 119 ANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAM 178
Query: 172 EAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQ 231
+AMNGQYLCNR I+VSYA+KKD KGERHG+ AER+LAA NPS+ RPH LFA P
Sbjct: 179 DAMNGQYLCNRPISVSYAFKKDHKGERHGSAAERLLAAQNPSTHADRPHQLFADAPVQTM 238
Query: 232 NAPQANGTVGGPVP 245
PQ G + +P
Sbjct: 239 -MPQMPGQIPAQMP 251
Score = 135 (52.6 bits), Expect = 1.4e-86, Sum P(3) = 1.4e-86
Identities = 26/33 (78%), Positives = 28/33 (84%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPV 51
AERNQDAT Y G LD +V+E LLWELFVQAGPV
Sbjct: 7 AERNQDATIYAGGLDDKVSETLLWELFVQAGPV 39
Score = 116 (45.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 29/100 (29%), Positives = 50/100 (50%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQG 67
+ N H + A ++GNLD +V E+LL++ F G ++ + +D T +
Sbjct: 103 IRVNKASAHQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKS 162
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-SQDKK 106
+ F+ F S E +D A+ +N L +PI V+ A +D K
Sbjct: 163 FAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKDHK 202
Score = 61 (26.5 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189
++ N + +D T +G+GF+ + S E +D I+ MN L + I V+ A
Sbjct: 56 MLAVNVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKA 108
Score = 39 (18.8 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 212 PSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVP--PRPYA 250
P + +P+ G P+ P PVP P PYA
Sbjct: 316 PPPRMMQPNAWAPPGMPAPPPRPPPTNWRPPPVPFPPTPYA 356
Score = 38 (18.4 bits), Expect = 1.4e-86, Sum P(3) = 1.4e-86
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 227 PPSLQNAPQANGTVGGPVPPRPYANGAASGP 257
PP P +G P PPR A + P
Sbjct: 299 PPMTGGQPPLPPAMGIPPPPRMMQPNAWAPP 329
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 817 (292.7 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 155/218 (71%), Positives = 183/218 (83%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
ERNQDAT YVG LD +V+E +LWEL VQAGPVV+V +PKDRVT HQG+GFVEF EEDA
Sbjct: 8 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
DYAIK+LNMIKLYGKPI+VNKAS +K++DVGAN+F+GNLDP+VDEKLLYDTFSAFGVI+
Sbjct: 68 DYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVIL 127
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
PKIMRD D+G S+GF FI++ SFEASD A+EAMNGQ+LCNR ITVSYA+K+D+KGERH
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERH 187
Query: 200 GTPAERILAANNPSSQKSRPHTLFASGPPSLQ-NAPQA 236
GT AER+LAA NP K RPH +F+ P + N P A
Sbjct: 188 GTAAERMLAAQNPLFPKDRPHQVFSDVPLGVPANTPLA 225
Score = 40 (19.1 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 227 PPSLQNAPQANGTVGGPVPPRP 248
PP P G G P PP P
Sbjct: 301 PPPPGRTPGPPGMPGMPPPPPP 322
Score = 40 (19.1 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 222 LFASGPPSLQNAPQA-NGTVGGPVPP 246
++ PPS AP + +G + P PP
Sbjct: 362 MYPPPPPSRPPAPPSGHGMIPPPPPP 387
Score = 37 (18.1 bits), Expect = 2.5e-83, Sum P(2) = 2.5e-83
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 227 PPSLQNAPQANGTVGGPVPPRP 248
PP + P A + G +PP P
Sbjct: 364 PPPPPSRPPAPPSGHGMIPPPP 385
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 817 (292.7 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 155/218 (71%), Positives = 183/218 (83%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
ERNQDAT YVG LD +V+E +LWEL VQAGPVV+V +PKDRVT HQG+GFVEF EEDA
Sbjct: 8 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
DYAIK+LNMIKLYGKPI+VNKAS +K++DVGAN+F+GNLDP+VDEKLLYDTFSAFGVI+
Sbjct: 68 DYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVIL 127
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
PKIMRD D+G S+GF FI++ SFEASD A+EAMNGQ+LCNR ITVSYA+K+D+KGERH
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERH 187
Query: 200 GTPAERILAANNPSSQKSRPHTLFASGPPSLQ-NAPQA 236
GT AER+LAA NP K RPH +F+ P + N P A
Sbjct: 188 GTAAERMLAAQNPLFPKDRPHQVFSDVPLGVPANTPLA 225
Score = 40 (19.1 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 227 PPSLQNAPQANGTVGGPVPPRP 248
PP P G G P PP P
Sbjct: 301 PPPPGRTPGPPGMPGMPPPPPP 322
Score = 40 (19.1 bits), Expect = 1.2e-83, Sum P(2) = 1.2e-83
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 222 LFASGPPSLQNAPQA-NGTVGGPVPP 246
++ PPS AP + +G + P PP
Sbjct: 362 MYPPPPPSRPPAPPSGHGMIPPPPPP 387
Score = 37 (18.1 bits), Expect = 2.5e-83, Sum P(2) = 2.5e-83
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 227 PPSLQNAPQANGTVGGPVPPRP 248
PP + P A + G +PP P
Sbjct: 364 PPPPPSRPPAPPSGHGMIPPPP 385
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 141/191 (73%), Positives = 162/191 (84%)
Query: 56 VPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLF 115
+PKDRVT HQGYGFVEF SEEDADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+F
Sbjct: 1 MPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIF 60
Query: 116 IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175
IGNLDP++DEKLLYDTFSAFGVI+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMN
Sbjct: 61 IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 120
Query: 176 GQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQ 235
GQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP SQ RPH LFA PP +AP
Sbjct: 121 GQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPN 179
Query: 236 -ANGTVGGPVP 245
++G +P
Sbjct: 180 PVVSSLGSGLP 190
Score = 136 (52.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 31/100 (31%), Positives = 54/100 (54%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQG 67
+ N H+ + A ++GNLDP++ E+LL++ F G ++ + +D T +G
Sbjct: 41 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 100
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-SQDKK 106
Y F+ F S + +D AI+ +N L +PI V+ A +D K
Sbjct: 101 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 140
>UNIPROTKB|F1MN26 [details] [associations]
symbol:F1MN26 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 EMBL:DAAA02057528
IPI:IPI00686039 Ensembl:ENSBTAT00000013961 OMA:ITVSHAF
Uniprot:F1MN26
Length = 398
Score = 708 (254.3 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 142/233 (60%), Positives = 170/233 (72%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVT-NLHQGYGFVEF 73
G+ +E NQDA YVG D +V E LLWELF+QAG VVN + KD VT HQGYGFVEF
Sbjct: 3 GRPISEWNQDAAVYVGGPDEKVREPLLWELFLQAGLVVNTNMAKDSVTVGQHQGYGFVEF 62
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFS 133
S ++ADYAIK++NMIK YGKP RVNKAS K LDVGAN+FIGNLDP + KLLYDTFS
Sbjct: 63 LSGKNADYAIKIMNMIKRYGKPTRVNKASAHSKKLDVGANIFIGNLDPQIG-KLLYDTFS 121
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
FGVI+ P+IMR+PDTGNS+G+ FI + S + DAAI+AMN QYLCN ITVS+A+KKD
Sbjct: 122 TFGVILQTPRIMRNPDTGNSKGYAFIHFVSCDVVDAAIKAMNRQYLCNHLITVSHAFKKD 181
Query: 194 TKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 246
+KGERHG+ E++LAA NP SQ RP LFA P L ++G +PP
Sbjct: 182 SKGERHGSGTEQLLAAQNPLSQADRPRQLFADATPPLSAPNPVILSLGSGLPP 234
Score = 113 (44.8 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 33/108 (30%), Positives = 52/108 (48%)
Query: 1 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKD 59
M R N HS + + A ++GNLDPQ+ + LL++ F G ++ + ++
Sbjct: 77 MIKRYGKPTRVNKASAHSKKLDVGANIFIGNLDPQIGK-LLYDTFSTFGVILQTPRIMRN 135
Query: 60 RVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-SQDKK 106
T +GY F+ F S + D AIK +N L I V+ A +D K
Sbjct: 136 PDTGNSKGYAFIHFVSCDVVDAAIKAMNRQYLCNHLITVSHAFKKDSK 183
Score = 51 (23.0 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 15/54 (27%), Positives = 19/54 (35%)
Query: 199 HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANG 252
HG + A P + S PH G P Q A +G P P + G
Sbjct: 268 HGPQSAGTPGAGYPGHRHSHPHPFLLGGMPHPQLAHHGPHGLGHPHAGPPGSGG 321
Score = 48 (22.0 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 225 SGPPSLQN--APQANGTVGGPVPPRPYA 250
SGP L P +G +G P PP PY+
Sbjct: 348 SGPMPLHGMRGPPPDGYIGPPRPP-PYS 374
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 134/244 (54%), Positives = 176/244 (72%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
G E++++AT Y+GNLD +V++ L+WEL +QAG +VNV++PKDRVT HQGYGFVEF
Sbjct: 3 GARHWEQDKEATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFN 62
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDK-KSLDVGANLFIGNLDPDVDEKLLYDTFS 133
SEEDA+YA +++N I+LYGKPIRVNKAS DK KS+++GA LF+GNLDP V E++LYDTFS
Sbjct: 63 SEEDAEYASRIMNGIRLYGKPIRVNKASADKQKSVEIGAELFVGNLDPMVTEQVLYDTFS 122
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
FG +V PK+ RD D+ S+G+GF+S+ FE+SDAAI MNGQYL N+Q++V YAYKKD
Sbjct: 123 RFGNLVNLPKVARD-DSNLSKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAYKKD 181
Query: 194 TKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGA 253
KGERHG AER+LAA ++K + PP AP A P P +
Sbjct: 182 GKGERHGDQAERMLAAQ---ARKHNVQVPTQALPPQF-TAPAA------PAMPADMSRPM 231
Query: 254 ASGP 257
++GP
Sbjct: 232 STGP 235
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 133/249 (53%), Positives = 180/249 (72%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
+RNQDAT Y+GNLD +VT+ +L+EL +QAGPVVN+++P+DRV N H G+GF EF E+D
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDKK-SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
+YA ++LN +KL+GKPIRVN+ASQD+ + +GANLF+GNLDP VDE++LYDTFSA G +
Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQL 125
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
V P++ RD + G S+G+GF+SYDSFE +DAAIEAMN Q+L N+ ITVSYA+K++ KGER
Sbjct: 126 VKAPQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGER 184
Query: 199 HGTPAERILAANNPSSQKS-RPH-TL---FASGPPSLQNAPQANGTVGGP-VPPRPYANG 252
HG AER LAA ++ + P TL F+ P+ +A T+ +PP P N
Sbjct: 185 HGDIAERKLAAAAKKNKVAVTPQSTLPPGFSPATPAPTSAANTPATIAATSIPPVP--NV 242
Query: 253 AASGPISAV 261
G +AV
Sbjct: 243 PLVGATTAV 251
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 133/247 (53%), Positives = 169/247 (68%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
E+N++AT YVGNLD + E L+WE+ Q GPVVN+++P DRV+ HQGYGFVEF + E A
Sbjct: 7 EQNKEATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESA 66
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDK-KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
DYA + LN I+++GK IRVNKAS DK K+ ++GA LF+ NLDP VDEK+L+DTFS FG +
Sbjct: 67 DYAARALNGIRVFGKVIRVNKASADKQKTAEIGAELFVNNLDPQVDEKILFDTFSRFGQL 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
VT P ++RD + S+G+GF+++DSFEASD A + MNGQYL ++QITV YAYKKD KGER
Sbjct: 127 VTPPNVVRDANN-ISKGYGFVNFDSFEASDTARDTMNGQYLLSKQITVEYAYKKDGKGER 185
Query: 199 HGTPAERILAA-----NNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPV--PPRPYAN 251
HG AER LAA N Q+ P S P S A T GP PP +
Sbjct: 186 HGDEAERKLAAEGKKHNIVPEQQPLPPAYLMSAPASTP-AGATPATPTGPAAGPPPGFDP 244
Query: 252 GAASGPI 258
A +GPI
Sbjct: 245 AAPNGPI 251
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 123/228 (53%), Positives = 165/228 (72%)
Query: 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
H ERN +AT Y+ NLD QV EE+L ELF+Q G V NV++P+D++ H GYGFVE+ E
Sbjct: 12 HIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYE 71
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
+ +YA +LNM KL+GK +R NKA+QDK+S DVGANLFIGNLD +VDEK+L+D FS+FG
Sbjct: 72 YECEYAANILNMTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFG 131
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 196
I+T K+MR+ D S+G GFISYD+FE+SD AIE MN Q++CN+++ +SYA+KKD+KG
Sbjct: 132 QIMT-VKVMRNEDD-TSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKG 189
Query: 197 ERHGTPAERILAANN-----PSSQKSRPHTLFASGPPSLQNAPQANGT 239
ERHGT AER +AAN P ++ + + + S S + P N T
Sbjct: 190 ERHGTAAERFIAANKALNLYPLNENNNNNNVNPSPFTSSNDIPLTNNT 237
Score = 119 (46.9 bits), Expect = 0.00022, P = 0.00022
Identities = 28/107 (26%), Positives = 56/107 (52%)
Query: 1 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDR 60
MT + N Q + A ++GNLD +V E++L+++F G ++ V V ++
Sbjct: 83 MTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNE 142
Query: 61 VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-SQDKK 106
+ +G+GF+ + + E +D AI+ +N + K + ++ A +D K
Sbjct: 143 -DDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSK 188
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 123/228 (53%), Positives = 165/228 (72%)
Query: 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
H ERN +AT Y+ NLD QV EE+L ELF+Q G V NV++P+D++ H GYGFVE+ E
Sbjct: 12 HIYERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYE 71
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
+ +YA +LNM KL+GK +R NKA+QDK+S DVGANLFIGNLD +VDEK+L+D FS+FG
Sbjct: 72 YECEYAANILNMTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFG 131
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 196
I+T K+MR+ D S+G GFISYD+FE+SD AIE MN Q++CN+++ +SYA+KKD+KG
Sbjct: 132 QIMT-VKVMRNEDD-TSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSKG 189
Query: 197 ERHGTPAERILAANN-----PSSQKSRPHTLFASGPPSLQNAPQANGT 239
ERHGT AER +AAN P ++ + + + S S + P N T
Sbjct: 190 ERHGTAAERFIAANKALNLYPLNENNNNNNVNPSPFTSSNDIPLTNNT 237
Score = 119 (46.9 bits), Expect = 0.00022, P = 0.00022
Identities = 28/107 (26%), Positives = 56/107 (52%)
Query: 1 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDR 60
MT + N Q + A ++GNLD +V E++L+++F G ++ V V ++
Sbjct: 83 MTKLFGKALRCNKATQDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSFGQIMTVKVMRNE 142
Query: 61 VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-SQDKK 106
+ +G+GF+ + + E +D AI+ +N + K + ++ A +D K
Sbjct: 143 -DDTSKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKKDSK 188
>DICTYBASE|DDB_G0267714 [details] [associations]
symbol:sf3b4 "splicing factor 3B subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0267714 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AAFI02000003
GO:GO:0005681 GO:GO:0003723 HSSP:Q15427 eggNOG:NOG282907 KO:K12831
RefSeq:XP_647248.1 ProteinModelPortal:Q55GD6 SMR:Q55GD6
STRING:Q55GD6 EnsemblProtists:DDB0233172 GeneID:8616053
KEGG:ddi:DDB_G0267714 OMA:ERNHEAC Uniprot:Q55GD6
Length = 359
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 119/232 (51%), Positives = 167/232 (71%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
ERN +A + +LDP VTE LL ELF+QA PVV V++PKD++T H G +VEF+S DA
Sbjct: 8 ERNHEACLLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDA 67
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
+YA+KV+ ++L+ K I++ K ++DK +D+GANLFIGNLD DVDE++L+DTFS FG I+
Sbjct: 68 EYALKVMKFVRLFNKEIKIKKENKDK--VDIGANLFIGNLDADVDERILHDTFSRFGTII 125
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
PK+MRD + G S+GF FI++DSFEASDAAIEAMN Q+LCN+ I+V+YA KKD+ ERH
Sbjct: 126 FTPKVMRD-ENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDSN-ERH 183
Query: 200 GTPAERILAANNPS---SQKSRPHTLFASGPPSLQNA-PQANGTVGG-PVPP 246
G+ AERI+AA+ + +Q+ + + S ++ + PQ P+PP
Sbjct: 184 GSSAERIIAASRNTGYLNQQQQQQSSSTSSTSTISTSTPQQQQQQQSQPLPP 235
>CGD|CAL0006311 [details] [associations]
symbol:orf19.2261 species:5476 "Candida albicans" [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 CGD:CAL0006311 GO:GO:0000166
EMBL:AACQ01000095 EMBL:AACQ01000096 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG282907 KO:K12831 RefSeq:XP_714789.1
RefSeq:XP_714851.1 ProteinModelPortal:Q59Z39 STRING:Q59Z39
GeneID:3643500 GeneID:3643580 KEGG:cal:CaO19.2261
KEGG:cal:CaO19.9801 Uniprot:Q59Z39
Length = 259
Score = 271 (100.5 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 56/104 (53%), Positives = 70/104 (67%)
Query: 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEAS 167
+DVGA LFI NL+P VDE L DTFS FG ++ NP I RD + G+S G+GF++YD FE+S
Sbjct: 123 IDVGAKLFINNLNPLVDESFLMDTFSKFGTLIRNPIIRRDSE-GHSLGYGFLTYDDFESS 181
Query: 168 DAAIEAMNGQYLCNRQITVSYAYKK---DTKGERHGTPAERILA 208
D I+ MN L N +IT+SYA+K D K RHG ER LA
Sbjct: 182 DLCIQKMNNTILMNNKITISYAFKDLSVDGKKSRHGDQVERKLA 225
Score = 254 (94.5 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 46/89 (51%), Positives = 67/89 (75%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
++RN DA+ Y GN+DPQVTE L++ELF+Q GPV ++ +PKDR+ HQGYGFVEF++ D
Sbjct: 11 SDRNIDASLYFGNIDPQVTELLMYELFIQFGPVKSINMPKDRILKTHQGYGFVEFKNSAD 70
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKS 107
A Y +++L I+LYGK +++ + D KS
Sbjct: 71 AKYTMEILRGIRLYGKALKLKRI--DAKS 97
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 345 (126.5 bits), Expect = 3.9e-33, Sum P(2) = 3.9e-33
Identities = 71/165 (43%), Positives = 108/165 (65%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG LDP VTE +L+ELF GPV ++ V +D VT GY +V F + ED + A+
Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + G+P R+ + +D +G N+FI NLDP +D K L+DTFSAFG I++ K
Sbjct: 140 ELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSC-K 198
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188
+ D + GN++G+GF+ +DS E+++AAIE +NG L ++++ V +
Sbjct: 199 VAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 242
Score = 251 (93.4 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 79/250 (31%), Positives = 125/250 (50%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Y+ NLD ++TE+ +LF Q G + ++ + KD+ + +G+GFV + + E A A+ LN
Sbjct: 264 YIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-NDKPRGFGFVNYANHECAQKAVDELN 322
Query: 88 MIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYD 130
+ GK + V +A + +K + G NLFI NL +VD++ L
Sbjct: 323 DKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKA 382
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FSAFG I T+ KIM D + G S+GFGF+ Y + E ++ A+ MN + L + + V+ A
Sbjct: 383 EFSAFGTI-TSAKIMTD-EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
Query: 191 KKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQ---NAPQANGTVGGPVPPR 247
+K+ + R A+ I A N Q+ A+G P++Q P G G P+P
Sbjct: 441 RKEVR--RSQLEAQ-IQARNQFRLQQQ---VAAAAGIPAVQYGATGPLIYGPGGYPIPAA 494
Query: 248 PYANGAASGP 257
G P
Sbjct: 495 VNGRGMPMVP 504
Score = 209 (78.6 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 55/177 (31%), Positives = 96/177 (54%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLDP + + L + F G +++ V D + N +GYGFV F S E A+ AI+ +N
Sbjct: 171 FIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNA-KGYGFVHFDSVESANAAIEHVN 229
Query: 88 MIKLYGKPIRV-NKASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L K + V + S+ ++ V A N++I NLD ++ E+ D F FG I T
Sbjct: 230 GMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEI-T 288
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
+ +++D + RGFGF++Y + E + A++ +N + +++ V A KK + E
Sbjct: 289 SLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREE 344
Score = 126 (49.4 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 29/132 (21%), Positives = 65/132 (49%)
Query: 95 PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 154
P + + + A+L++G LDP V E +L++ F++ G V + ++ RD T S
Sbjct: 63 PTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGP-VASIRVCRDAVTRRSL 121
Query: 155 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAAN-NPS 213
G+ ++++ + E + A++ +N + R + ++ ++D + GT + N +P+
Sbjct: 122 GYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS-QRDPSLRKMGTG--NVFIKNLDPA 178
Query: 214 SQKSRPHTLFAS 225
H F++
Sbjct: 179 IDNKALHDTFSA 190
Score = 46 (21.3 bits), Expect = 3.9e-33, Sum P(2) = 3.9e-33
Identities = 27/98 (27%), Positives = 38/98 (38%)
Query: 168 DAAIEAMNGQYLCNRQITVSY---AYKKDTKGER-HGTPAERILAANNPSSQKSRP-HTL 222
+A I+A N Q+ +Q+ + A + G +G I AA N P H
Sbjct: 450 EAQIQARN-QFRLQQQVAAAAGIPAVQYGATGPLIYGPGGYPIPAAVNGRGMPMVPGH-- 506
Query: 223 FASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISA 260
+GP + GGP P P N A GP+ A
Sbjct: 507 --NGPMPMYPGMPTQFPAGGPAPGYPGMN--ARGPVPA 540
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 328 (120.5 bits), Expect = 2.2e-32, Sum P(2) = 2.2e-32
Identities = 69/175 (39%), Positives = 112/175 (64%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + G+P+R+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 235 (87.8 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
Identities = 70/239 (29%), Positives = 116/239 (48%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L E+F + GP +++ V D + +G+GFV F ED
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDD-SGKSKGFGFVSFERHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N ++ GK + V +A QD+ + G NL++ NLD
Sbjct: 244 AQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 304 GLDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 182 RQITVSYAYKKDTKGERHGTPA--ER---ILAANNP---SSQKSRPHTLFASGPPSLQN 232
+ + V+ A +K+ + + H T +R + A NP Q + P F + P QN
Sbjct: 361 KPLYVALAQRKEER-QAHLTSQYMQRMASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQN 418
Score = 227 (85.0 bits), Expect = 2.4e-21, Sum P(2) = 2.4e-21
Identities = 56/178 (31%), Positives = 102/178 (57%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F + E A+ AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETHEAAERAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L + F +G ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
++M D D+G S+GFGF+S++ E + A++ MNG+ + +Q+ V A KK GER
Sbjct: 220 I-RVMTD-DSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKK---GER 272
Score = 56 (24.8 bits), Expect = 2.2e-32, Sum P(2) = 2.2e-32
Identities = 19/51 (37%), Positives = 24/51 (47%)
Query: 208 AANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGP-VPPRPYANGAASGP 257
AA PS+ RP T P S + +G + PRP A GAA+GP
Sbjct: 453 AAVRPSAP--RPQTFNPVRPASQVPRMMTSQRMGSQAMGPRPAAAGAATGP 501
Score = 47 (21.6 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 18/60 (30%), Positives = 22/60 (36%)
Query: 198 RHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGP-----VPPRPYANG 252
R P + P+SQ R T G ++ P A G GP VP YA G
Sbjct: 456 RPSAPRPQTFNPVRPASQVPRMMTSQRMGSQAMGPRPAAAGAATGPAQVRGVPQYKYAPG 515
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 331 (121.6 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 70/175 (40%), Positives = 112/175 (64%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 237 (88.5 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 57/172 (33%), Positives = 100/172 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L D F FG ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 133 (51.9 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 69/251 (27%), Positives = 107/251 (42%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQ-GY-GFVEFRSE 76
A + Y+ N + +E L +LF + GP ++V V D G+ F
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 77 EDA--DYAIKVLNMIKLY-G---KPI--------RVNKASQDKKSLDVGANLFIGNLDPD 122
+ A + K LN ++Y G K + + + QD+ + G NL++ NLD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDG 304
Query: 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNR 182
+D++ L FS FG I T+ K+M + G S+GFGF+ + S+ A++ A+ +
Sbjct: 305 IDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCF-SYMQRMASVRAVPNPVINPY 360
Query: 183 QITVSYAYKKDTKGERHGTPAERILAANNPSSQ--KSRPHTLF-ASG--PPSLQNAPQAN 237
Q Y P + AA P SQ + RP + A G P QN P
Sbjct: 361 QPAPPSGYFMAA------IPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMP--- 411
Query: 238 GTVGGPVPPRP 248
G + P PRP
Sbjct: 412 GAIR-PAAPRP 421
Score = 44 (20.5 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 208 AANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISAVR 262
AA P RP + S P + + + T + PRP A AA+ P AVR
Sbjct: 417 AAPRPPFSTMRPAS---SQVPRVMSTQRVANTSTQTMGPRPAAAAAAATP--AVR 466
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 331 (121.6 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 70/175 (40%), Positives = 112/175 (64%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 238 (88.8 bits), Expect = 4.2e-19, P = 4.2e-19
Identities = 81/267 (30%), Positives = 125/267 (46%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L +LF + GP ++V V D + +G+GFV F ED
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N +L GK I V +A QD+ + G NL++ NLD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 304 GIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 182 RQITVSYAYKKDTKGERHGTPA--ER---ILAANNP---SSQKSRPHTLFASGPPSLQN- 232
+ + V+ A +K+ + + H T +R + A NP Q + P F + P QN
Sbjct: 361 KPLYVALAQRKEER-QAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNR 419
Query: 233 -APQANGTVGGPVP-PRPYANGAASGP 257
A + P PR A GA P
Sbjct: 420 AAYYPPSQIAQLRPSPRWTAQGARPHP 446
Score = 237 (88.5 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 57/172 (33%), Positives = 100/172 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L D F FG ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 44 (20.5 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 208 AANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISAVR 262
AA P RP + S P + + + T + PRP A AA+ P AVR
Sbjct: 457 AAPRPPFSTMRPAS---SQVPRVMSTQRVANTSTQTMGPRPAAAAAAATP--AVR 506
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 331 (121.6 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 70/175 (40%), Positives = 112/175 (64%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 238 (88.8 bits), Expect = 4.2e-19, P = 4.2e-19
Identities = 81/267 (30%), Positives = 125/267 (46%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L +LF + GP ++V V D + +G+GFV F ED
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N +L GK I V +A QD+ + G NL++ NLD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 304 GIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 182 RQITVSYAYKKDTKGERHGTPA--ER---ILAANNP---SSQKSRPHTLFASGPPSLQN- 232
+ + V+ A +K+ + + H T +R + A NP Q + P F + P QN
Sbjct: 361 KPLYVALAQRKEER-QAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNR 419
Query: 233 -APQANGTVGGPVP-PRPYANGAASGP 257
A + P PR A GA P
Sbjct: 420 AAYYPPSQIAQLRPSPRWTAQGARPHP 446
Score = 237 (88.5 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 57/172 (33%), Positives = 100/172 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L D F FG ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 44 (20.5 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 208 AANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISAVR 262
AA P RP + S P + + + T + PRP A AA+ P AVR
Sbjct: 457 AAPRPPFSTMRPAS---SQVPRVMSTQRVANTSTQTMGPRPAAAAAAATP--AVR 506
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 331 (121.6 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 70/175 (40%), Positives = 112/175 (64%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 238 (88.8 bits), Expect = 4.2e-19, P = 4.2e-19
Identities = 81/267 (30%), Positives = 125/267 (46%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L +LF + GP ++V V D + +G+GFV F ED
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N +L GK I V +A QD+ + G NL++ NLD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 304 GIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 182 RQITVSYAYKKDTKGERHGTPA--ER---ILAANNP---SSQKSRPHTLFASGPPSLQN- 232
+ + V+ A +K+ + + H T +R + A NP Q + P F + P QN
Sbjct: 361 KPLYVALAQRKEER-QAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNR 419
Query: 233 -APQANGTVGGPVP-PRPYANGAASGP 257
A + P PR A GA P
Sbjct: 420 AAYYPPSQIAQLRPSPRWTAQGARPHP 446
Score = 237 (88.5 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 57/172 (33%), Positives = 100/172 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L D F FG ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 44 (20.5 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 208 AANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISAVR 262
AA P RP + S P + + + T + PRP A AA+ P AVR
Sbjct: 457 AAPRPPFSTMRPAS---SQVPRVMSTQRVANTSTQTMGPRPAAAAAAATP--AVR 506
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 331 (121.6 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 70/175 (40%), Positives = 112/175 (64%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 238 (88.8 bits), Expect = 4.2e-19, P = 4.2e-19
Identities = 81/267 (30%), Positives = 125/267 (46%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L +LF + GP ++V V D + +G+GFV F ED
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N +L GK I V +A QD+ + G NL++ NLD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 304 GIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 182 RQITVSYAYKKDTKGERHGTPA--ER---ILAANNP---SSQKSRPHTLFASGPPSLQN- 232
+ + V+ A +K+ + + H T +R + A NP Q + P F + P QN
Sbjct: 361 KPLYVALAQRKEER-QAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNR 419
Query: 233 -APQANGTVGGPVP-PRPYANGAASGP 257
A + P PR A GA P
Sbjct: 420 AAYYPPSQIAQLRPSPRWTAQGARPHP 446
Score = 237 (88.5 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 57/172 (33%), Positives = 100/172 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L D F FG ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 44 (20.5 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 208 AANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISAVR 262
AA P RP + S P + + + T + PRP A AA+ P AVR
Sbjct: 457 AAPRPPFSTMRPAS---SQVPRVMSTQRVANTSTQTMGPRPAAAAAAATP--AVR 506
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 331 (121.6 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 70/175 (40%), Positives = 112/175 (64%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 241 (89.9 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 82/267 (30%), Positives = 125/267 (46%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L ELF + GP ++V V D + +G+GFV F ED
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N +L GK I V +A QD+ + G NL++ NLD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 304 GIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 182 RQITVSYAYKKDTKGERHGTPA--ER---ILAANNP---SSQKSRPHTLFASGPPSLQN- 232
+ + V+ A +K+ + + H T +R + A NP Q + P F + P QN
Sbjct: 361 KPLYVALAQRKEER-QAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNR 419
Query: 233 -APQANGTVGGPVP-PRPYANGAASGP 257
A + P PR A GA P
Sbjct: 420 AAYYPPSQIAQLRPSPRWTAQGARPHP 446
Score = 233 (87.1 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 56/172 (32%), Positives = 100/172 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L + F FG ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 44 (20.5 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 208 AANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISAVR 262
AA P RP + S P + + + T + PRP A AA+ P AVR
Sbjct: 457 AAPRPPFSTMRPAS---SQVPRVMSTQRVANTSTQTMGPRPAAAAAAATP--AVR 506
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 327 (120.2 bits), Expect = 5.2e-31, Sum P(2) = 5.2e-31
Identities = 69/175 (39%), Positives = 111/175 (63%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P TE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 238 (88.8 bits), Expect = 4.2e-19, P = 4.2e-19
Identities = 81/267 (30%), Positives = 125/267 (46%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L +LF + GP ++V V D + +G+GFV F ED
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N +L GK I V +A QD+ + G NL++ NLD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 304 GIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 182 RQITVSYAYKKDTKGERHGTPA--ER---ILAANNP---SSQKSRPHTLFASGPPSLQN- 232
+ + V+ A +K+ + + H T +R + A NP Q + P F + P QN
Sbjct: 361 KPLYVALAQRKEER-QAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNR 419
Query: 233 -APQANGTVGGPVP-PRPYANGAASGP 257
A + P PR A GA P
Sbjct: 420 AAYYPPSQIAQLRPSPRWTAQGARPHP 446
Score = 237 (88.5 bits), Expect = 3.5e-21, Sum P(2) = 3.5e-21
Identities = 57/172 (33%), Positives = 100/172 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L D F FG ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 44 (20.5 bits), Expect = 5.2e-31, Sum P(2) = 5.2e-31
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 208 AANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISAVR 262
AA P RP + S P + + + T + PRP A AA+ P AVR
Sbjct: 457 AAPRPPFSTMRPAS---SQVPRVMSTQRVANTSTQTMGPRPAAAAAAATP--AVR 506
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 325 (119.5 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 70/175 (40%), Positives = 111/175 (63%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P +TE +L+E F AGPV+++ V +D +T GY +V F+ DA+ A+
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKPIR+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC-K 130
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+ F+ +++ +A+D AIE MNG L +R++ V + +K+ + E
Sbjct: 131 VVCD-ENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAE 183
Score = 238 (88.8 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 58/182 (31%), Positives = 101/182 (55%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S ++ ++ NLD + + L++ F G +++ V D N +GY FV F +++
Sbjct: 93 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQD 150
Query: 78 DADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYD 130
AD AI+ +N + L + + V + S+ ++ ++GA N++I N D+D++ L +
Sbjct: 151 AADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKE 210
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
F +G ++ K+M DP TG SRGFGF+SY+ E ++ A+E MNG L + + V A
Sbjct: 211 LFDKYGKTLS-VKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQ 268
Query: 191 KK 192
KK
Sbjct: 269 KK 270
Score = 222 (83.2 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 60/194 (30%), Positives = 102/194 (52%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ + Y+ N + ++ L ELF + G ++V V D T +G+GFV + ED
Sbjct: 186 AKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHED 244
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A+ A++ +N +L GK + V +A Q++ S G NL+I NLD
Sbjct: 245 ANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 304
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + +
Sbjct: 305 TIDDEKLRKEFSPFGSI-TSAKVMLEE--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 361
Query: 182 RQITVSYAYKKDTK 195
+ + V+ A +K+ +
Sbjct: 362 KPLYVALAQRKEER 375
Score = 45 (20.9 bits), Expect = 6.9e-31, Sum P(2) = 6.9e-31
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 226 GPPSLQNAPQANGTVGGPVPPRP 248
GP + Q G G P+ PRP
Sbjct: 475 GPRGMPTGAQRVGGTGQPMGPRP 497
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 331 (121.6 bits), Expect = 7.0e-31, Sum P(2) = 7.0e-31
Identities = 70/175 (40%), Positives = 112/175 (64%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 238 (88.8 bits), Expect = 4.3e-19, P = 4.3e-19
Identities = 81/267 (30%), Positives = 125/267 (46%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L +LF + GP ++V V D + +G+GFV F ED
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N +L GK I V +A QD+ + G NL++ NLD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 304 GIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 182 RQITVSYAYKKDTKGERHGTPA--ER---ILAANNP---SSQKSRPHTLFASGPPSLQN- 232
+ + V+ A +K+ + + H T +R + A NP Q + P F + P QN
Sbjct: 361 KPLYVALAQRKEER-QAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNR 419
Query: 233 -APQANGTVGGPVP-PRPYANGAASGP 257
A + P PR A GA P
Sbjct: 420 AAYYPPSQIAQLRPSPRWTAQGARPHP 446
Score = 237 (88.5 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 57/172 (33%), Positives = 100/172 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L D F FG ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 39 (18.8 bits), Expect = 7.0e-31, Sum P(2) = 7.0e-31
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 206 ILAANNPSSQKS--RPHTLFASGPPSLQNAPQANGTVG 241
I ++ N S+Q RP A+ P+++ PQ G
Sbjct: 490 ITSSANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAG 527
>SGD|S000005846 [details] [associations]
symbol:HSH49 "U2-snRNP associated splicing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP;IPI] [GO:0071004 "U2-type
prespliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000005846 EMBL:BK006948 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 GO:GO:0005686 GO:GO:0071004 EMBL:X90565
GeneTree:ENSGT00690000101901 EMBL:Z75227 EMBL:AY558437 PIR:S58329
RefSeq:NP_014964.1 ProteinModelPortal:Q99181 SMR:Q99181
DIP:DIP-930N IntAct:Q99181 MINT:MINT-391267 STRING:Q99181
PaxDb:Q99181 PeptideAtlas:Q99181 EnsemblFungi:YOR319W GeneID:854497
KEGG:sce:YOR319W CYGD:YOR319w eggNOG:NOG282907 HOGENOM:HOG000200535
KO:K12831 OMA:QEATVYL OrthoDB:EOG4Q886Z NextBio:976831
Genevestigator:Q99181 GermOnline:YOR319W Uniprot:Q99181
Length = 213
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 70/195 (35%), Positives = 118/195 (60%)
Query: 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKV 85
T YVGN+DP++T+E L+ELF+Q PV+ + PKD+V +QGY F+EF ++ DA YAIK+
Sbjct: 10 TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKI 69
Query: 86 LN-MIKLYGKPIRVNKASQDKKSLDVGAN-----------LFIGNLDPDVDEKLLYDTFS 133
+N ++LY + I+V + + + ++ +N LFI NL +D L F+
Sbjct: 70 MNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLADSIDSDQLVKIFN 129
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
FG ++ P+I G + ++ ++ FE +D AI+++N Q + N +ITV YA+K++
Sbjct: 130 KFGKLIREPEIFY-LSNGKLK-CAYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFKEN 187
Query: 194 TKGE-RHGTPAERIL 207
KG ++G +R+L
Sbjct: 188 GKGNAKYGDDVDRLL 202
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 322 (118.4 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 73/200 (36%), Positives = 115/200 (57%)
Query: 8 GVGANLLGQHSAERNQD-ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQ 66
G A GQ+ + A+ YVG+L P V E +L+E F AGPV+++ V +D T L
Sbjct: 14 GAAAPQPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSL 73
Query: 67 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDE 125
GY +V F+ DA+ A+ +N L+GKP+R+ + +D GA N+FI NLD +D
Sbjct: 74 GYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDN 133
Query: 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185
K +YDTFS FG I++ K+ D D G S+G+GF+ +++ EA+ AI+ +NG L +++
Sbjct: 134 KSIYDTFSLFGNILSC-KVAIDED-GFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVF 191
Query: 186 VSYAYKKDTKGERHGTPAER 205
V + + G A++
Sbjct: 192 VGKFQPRAQRNRELGETAKQ 211
Score = 175 (66.7 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 48/186 (25%), Positives = 97/186 (52%)
Query: 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDAD 80
R+ ++ NLD + + +++ F G +++ V D +GYGFV F +EE A
Sbjct: 116 RSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDE-DGFSKGYGFVHFETEEAAQ 174
Query: 81 YAIKVLNMIKLYGKPIRVNKAS-QDKKSLDVG------ANLFIGNLDPDVDEKLLYDTFS 133
AI+ +N + L GK + V K + +++ ++G N+++ N +++ L F+
Sbjct: 175 NAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFA 234
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
FG I T+ ++M G S+GFGF+++ + E ++ A++A++ + + + + +
Sbjct: 235 KFGNI-TSCEVMTVE--GKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKL-HVCRAQ 290
Query: 194 TKGERH 199
K ERH
Sbjct: 291 KKSERH 296
Score = 154 (59.3 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 30/85 (35%), Positives = 54/85 (63%)
Query: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
G NL++ NLD VD+ L F ++G I T+ K+M D + G S+GFGF+ ++ E + +A
Sbjct: 316 GVNLYVKNLDETVDDDGLKKQFESYGNI-TSAKVMTD-ENGRSKGFGFVCFEKPEEATSA 373
Query: 171 IEAMNGQYLCNRQITVSYAYKKDTK 195
+ MN + +C++ + V+ A +K+ +
Sbjct: 374 VTEMNSKMVCSKPLYVAIAQRKEDR 398
Score = 41 (19.5 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 227 PPSLQNAPQANGTVGGPVPPRPY 249
PP Q Q G PP+PY
Sbjct: 530 PPQ-QQQQQRPAPTGPKAPPQPY 551
Score = 37 (18.1 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 226 GPPSLQNAPQANGTVGGPVPPRPYANGAASGP 257
GPP QN V P + A +GP
Sbjct: 513 GPPRTQNPGVQQQNVPRPPQQQQQQRPAPTGP 544
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 339 (124.4 bits), Expect = 5.6e-30, P = 5.6e-30
Identities = 78/197 (39%), Positives = 118/197 (59%)
Query: 6 APGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLH 65
A GA +A++ + YVG+LD VT+ L+E F QAG VV+V V +D T
Sbjct: 27 AAAAGAAAAAAGAAQQGT-TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRS 85
Query: 66 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVD 124
GYG+V + + +DA A+ LN + L G+ IRV + +D G N+FI NLD +D
Sbjct: 86 LGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSID 145
Query: 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQI 184
K L++TFSAFG I++ K+ DP +G S+G+GF+ YD+ EA+ AI+ +NG L ++Q+
Sbjct: 146 HKALHETFSAFGPILSC-KVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV 203
Query: 185 TVS-YAYK--KDTKGER 198
V + +K +D GE+
Sbjct: 204 YVGPFVHKLQRDPSGEK 220
Score = 222 (83.2 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 67/228 (29%), Positives = 111/228 (48%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S E+ + YV NL +++E L ++F + G + + +D +G+GFV F + +
Sbjct: 217 SGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSD 275
Query: 78 DADYAIKVLNMIKLYGKPIRVNKASQD---------------KKSLDV--GANLFIGNLD 120
DA A+ LN K V KA + K++ D G+NL++ NLD
Sbjct: 276 DAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLD 335
Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
V + L + F+ FG I T+ K+MRDP +G SRG GF+++ + E + AI MNG+ +
Sbjct: 336 ESVTDDKLREHFAPFGTI-TSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIV 393
Query: 181 NRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPP 228
+ + V+ A +K+ + R ++ N P + R GPP
Sbjct: 394 TKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPP 441
Score = 121 (47.7 bits), Expect = 0.00021, P = 0.00021
Identities = 31/94 (32%), Positives = 53/94 (56%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
+ +A+++Q + YV NLD VT++ L E F G + + V +D + + +G GFV F +
Sbjct: 318 KEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDP-SGVSRGSGFVAFST 376
Query: 76 EEDADYAIKVLNMIKLYGKPIRVNKAS--QDKKS 107
E+A AI +N + KP+ V A +D+K+
Sbjct: 377 PEEATRAITEMNGKMIVTKPLYVALAQRKEDRKA 410
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 334 (122.6 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 77/173 (44%), Positives = 109/173 (63%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
G +A + + + YVG+LD VT+ L++ F Q G VV V V +D VT GYG+V F
Sbjct: 26 GGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFT 85
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFS 133
+ +DA AI+ LN I LYGKPIRV + +D GA N+FI NLD +D K L+DTFS
Sbjct: 86 NPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFS 145
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186
+FG IV+ K+ D +G S+G+GF+ Y + E++ AIE +NG L ++Q+ V
Sbjct: 146 SFGNIVSC-KVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 197 (74.4 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 52/183 (28%), Positives = 95/183 (51%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S R+ ++ NLD + + L + F G +V+ V D + +GYGFV++ +EE
Sbjct: 117 SVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEE 175
Query: 78 DADYAIKVLNMIKLYGKPIRVNK--ASQDKKSL---DVGANLFIGNLDPDVDEKLLYDTF 132
A AI+ LN + L K + V Q++ S N+++ NL + L + F
Sbjct: 176 SAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAF 235
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
+G I T+ +M+D + G S+GFGF+++++ + + A+E++NG +++ V A KK
Sbjct: 236 GEYGKI-TSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK 293
Query: 193 DTK 195
+
Sbjct: 294 SER 296
Score = 166 (63.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 59/248 (23%), Positives = 110/248 (44%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKD-----------RVTNLHQ 66
+A + + YV NL T++ L F + G + + V KD N
Sbjct: 208 TANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADD 267
Query: 67 GYGFVEFRSE---EDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV--GANLFIGNLDP 121
VE + +D ++ + +RV K++ D +NL++ NLDP
Sbjct: 268 AARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDP 327
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+ ++ L + FS FG VT+ K+MRDP+ G S+G GF+++ + E + A+ ++G+ + +
Sbjct: 328 SISDEKLKEIFSPFGT-VTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIES 385
Query: 182 RQITVSYAYKKDTKGERHGTPAERIL-AANNPSSQKSRPHTLFASGPPSLQNAPQANGTV 240
+ + V+ A +K+ + R ++ A PS P ++ G P +
Sbjct: 386 KPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMP--VYPPGGPGIGQQMFYGQAP 443
Query: 241 GGPVPPRP 248
+PP+P
Sbjct: 444 PAMIPPQP 451
Score = 122 (48.0 bits), Expect = 0.00015, P = 0.00015
Identities = 34/114 (29%), Positives = 60/114 (52%)
Query: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172
+L++G+LD +V + L+D F G +VT ++ RD T S G+G++++ + + + AI+
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVT-VRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 173 AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAAN-NPSSQKSRPHTLFAS 225
+N L + I V Y+++ D R G A I N + S H F+S
Sbjct: 96 ELNYIPLYGKPIRVMYSHR-DPSVRRSG--AGNIFIKNLDESIDHKALHDTFSS 146
Score = 115 (45.5 bits), Expect = 0.00089, P = 0.00089
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
+ +A++ Q + YV NLDP +++E L E+F G V + V +D +G GFV F +
Sbjct: 309 KEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFAT 367
Query: 76 EEDADYAIKVLNMIKLYGKPIRV 98
E+A A+ L+ + KP+ V
Sbjct: 368 PEEATEAMSQLSGKMIESKPLYV 390
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 312 (114.9 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 68/167 (40%), Positives = 109/167 (65%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ Y+G+L P VTE +L+E F AGP++++ V +D T Y ++ F+ DA+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N + G+PIR+ + +D +KS VG N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKS-GVG-NVFIKNLDESIDNKALYDTFSAFGNILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188
K++ D + G SRG+GF+ +++ EA++ AI+ MNG L +R++ V +
Sbjct: 129 -KVVCD-EHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGH 172
Score = 236 (88.1 bits), Expect = 3.4e-21, Sum P(2) = 3.4e-21
Identities = 59/172 (34%), Positives = 98/172 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D + +GYGFV F + E A+ AI+ +N
Sbjct: 102 FIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS--RGYGFVHFETHEAANRAIQTMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V S+ ++ L+ GA N++I N D+D+K L + FSAFG ++
Sbjct: 160 GMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D D+G SRGFGF++Y + E + A+ MNG+ + R I V A K+
Sbjct: 220 -VKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Score = 192 (72.6 bits), Expect = 9.5e-13, P = 9.5e-13
Identities = 66/255 (25%), Positives = 121/255 (47%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
++ A+ + Y+ N + ++ L E+F G ++V V D + +G+GFV + +
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGN 240
Query: 76 EEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDV----------GANLFIGN 118
E+A A+ +N ++ G+ I R+ + S+ K+ + G NL++ N
Sbjct: 241 HEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKN 300
Query: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 178
LD +D+ L F +G I T+ K+M + G+S+GFGF+ + S E + A+ MNG+
Sbjct: 301 LDDGIDDDRLRKEFLPYGTI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 179 LCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFAS-GPPS---LQNAP 234
+ + + V+ A +K+ ER + + ++ ++ P L S P+ L P
Sbjct: 358 VSTKPLYVALAQRKE---ERKAILTNQYM--QRLATMRAMPGPLLGSFQQPANYFLSAMP 412
Query: 235 QA-NGTVGGPVPPRP 248
Q N T P P P
Sbjct: 413 QPPNRTFYSPNPVAP 427
Score = 118 (46.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 25/80 (31%), Positives = 48/80 (60%)
Query: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
A+L+IG+L PDV E +LY+ FS G I++ ++ RD T S + +I++ ++ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSI-RVCRDIATRRSLSYAYINFQQPADAERAL 69
Query: 172 EAMNGQYLCNRQITVSYAYK 191
+ MN + + R I + ++ +
Sbjct: 70 DTMNFEVIKGRPIRIMWSQR 89
Score = 45 (20.9 bits), Expect = 1.8e-29, Sum P(2) = 1.8e-29
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 200 GTPAERILAANNPSSQKSRPHTLFASGPPSLQ 231
GT A NPS ++ PH ++ G ++Q
Sbjct: 487 GTQTAGARAQVNPSMMRTMPHYKYSCGVRNVQ 518
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 317 (116.6 bits), Expect = 2.6e-29, Sum P(2) = 2.6e-29
Identities = 70/167 (41%), Positives = 110/167 (65%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D T GY ++ F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N + G+PIR+ + +D +KS VG N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKS-GVG-NVFIKNLDESIDNKALYDTFSAFGNILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188
K++ D + G SRG+GF+ +++ EA++ AI+ MNG L +R++ V +
Sbjct: 129 -KVVCD-EHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH 172
Score = 246 (91.7 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 62/178 (34%), Positives = 103/178 (57%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D + +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS--RGYGFVHFETQEAANRAIQTMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V S+ ++ L+ GA N++I N D+D+K L + FSAFG ++
Sbjct: 160 GMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGE 197
K+M D DTG SRGFGF++Y + E + A+ MNG+ + R I V A K+ + +GE
Sbjct: 220 -VKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGE 275
Score = 198 (74.8 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
Identities = 54/197 (27%), Positives = 101/197 (51%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
++ A+ + Y+ N + ++ L E+F G ++V V D T +G+GFV + +
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGN 240
Query: 76 EEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGN 118
E+A A+ +N ++ G+ I V +A Q++ + G NL++ N
Sbjct: 241 HEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKN 300
Query: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 178
LD +D+ L FS +G I T+ K+M + G+S+GFGF+ + S E + A+ MNG+
Sbjct: 301 LDDGIDDDRLRKEFSPYGTI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 179 LCNRQITVSYAYKKDTK 195
+ + + V+ A +K+ +
Sbjct: 358 VSTKPLYVALAQRKEER 374
Score = 123 (48.4 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 25/80 (31%), Positives = 49/80 (61%)
Query: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
A+L++G+L PDV E +LY+ FS G I++ ++ RD T S G+ +I++ ++ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSI-RVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 172 EAMNGQYLCNRQITVSYAYK 191
+ MN + + R I + ++ +
Sbjct: 70 DTMNFEVIKGRPIRIMWSQR 89
Score = 38 (18.4 bits), Expect = 2.6e-29, Sum P(2) = 2.6e-29
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 200 GTPAERILAANNPSSQKSRPHTLFASGPPSLQ 231
GT A NPS ++ PH ++ ++Q
Sbjct: 487 GTQTAGARAQVNPSIMRTMPHYKYSCAVRNVQ 518
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 331 (121.6 bits), Expect = 3.5e-29, P = 3.5e-29
Identities = 70/175 (40%), Positives = 112/175 (64%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 241 (89.9 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 82/267 (30%), Positives = 125/267 (46%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L ELF + GP ++V V D + +G+GFV F ED
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N +L GK I V +A QD+ + G NL++ NLD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 304 GIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 182 RQITVSYAYKKDTKGERHGTPA--ER---ILAANNP---SSQKSRPHTLFASGPPSLQN- 232
+ + V+ A +K+ + + H T +R + A NP Q + P F + P QN
Sbjct: 361 KPLYVALAQRKEER-QAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNR 419
Query: 233 -APQANGTVGGPVP-PRPYANGAASGP 257
A + P PR A GA P
Sbjct: 420 AAYYPPSQIAQLRPSPRWTAQGARPHP 446
Score = 233 (87.1 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 56/172 (32%), Positives = 100/172 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L + F FG ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 331 (121.6 bits), Expect = 3.6e-29, P = 3.6e-29
Identities = 70/175 (40%), Positives = 112/175 (64%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +DR T GY V F+ EDA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+F+ NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+GF+ +++ E ++ AIE MNG +L +R++ V + ++D + E
Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAE 182
Score = 244 (91.0 bits), Expect = 9.6e-20, P = 9.6e-20
Identities = 61/173 (35%), Positives = 105/173 (60%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NLD + + L++ F G +++ V D N +GYGFV F ++E+A+ AI+ +N
Sbjct: 102 FVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEEAERAIEKMN 159
Query: 88 MIKLYGKPIRVN--KASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIV 139
+ L + + V K+ +D+++ ++GA N++I NL D+D++ L D FS FG +
Sbjct: 160 GMFLNDRKVFVGRFKSRRDRQA-ELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPAL 218
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
+ K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 219 S-VKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKK 269
Score = 167 (63.8 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 52/172 (30%), Positives = 84/172 (48%)
Query: 94 KPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNS 153
KP ++ + QD+ G NL++ NLD +D++ L FS FG I T+ K+ + G S
Sbjct: 287 KP-KIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTI-TSAKVTMEG--GRS 342
Query: 154 RGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH--GTPAERILAAN- 210
+GFGF+ + S E + A+ MNG+ + + + V+ A +K+ + + H +R+ + +
Sbjct: 343 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER-QAHLSNQYMQRMASTSA 401
Query: 211 --NPSSQKSRPHTLFASGPPSLQNAPQAN-GTVGGP---VPPRPYANGAASG 256
NP +P SG AP N GT P P A G+A G
Sbjct: 402 VPNPGINPFQP-AQGLSGYFMTATAPTQNRGTYYAPNQTTQQGPSARGSAQG 452
Score = 119 (46.9 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ NL + +E L +LF + GP ++V V D + +G+GFV F ED
Sbjct: 185 ARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQ 103
A A+ +N L GK I V +A +
Sbjct: 244 ARKAVDEMNGKDLNGKQIYVGRAQK 268
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 310 (114.2 bits), Expect = 6.1e-29, Sum P(2) = 6.1e-29
Identities = 62/175 (35%), Positives = 108/175 (61%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ + +D +T+ Y +V F+ +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+F+ NLD ++ K LYDT SAFG I++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
+ D S+G+GF+ +++ EA++ AI+ MNG L R++ V + +K+ + E
Sbjct: 131 VC---DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
Score = 240 (89.5 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 59/172 (34%), Positives = 99/172 (57%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NLD + + L++ G +++ V D N +GYGFV F + E A+ AIK +N
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L G+ + V + S+ ++ ++GA N++I N D+D++ L D F FG ++
Sbjct: 160 GMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 238 (88.8 bits), Expect = 4.1e-19, P = 4.1e-19
Identities = 79/270 (29%), Positives = 128/270 (47%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L +LF + GP ++V V D + +G+GFV F ED
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N +L GK I V +A QD+ + NL++ NLD
Sbjct: 244 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 304 GIDDERLRKAFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 182 RQITVSYAYKKDTKGERHGTPA--ERILAANNPSSQKSRPHTLFASGPPSLQN--APQAN 237
+ + V+ A +K+ + + + T +R+ + +Q++ P F + P QN A
Sbjct: 361 KPLYVALAQRKEER-QAYLTNEYMQRMASVRAVPNQRAPPSGYFMTAVPQTQNHAAYYPP 419
Query: 238 GTVGGPVP-PRPYANGAASGPI----SAVR 262
+ P PR A GA P SA+R
Sbjct: 420 SQIARLRPSPRWTAQGARPHPFQNKPSAIR 449
Score = 42 (19.8 bits), Expect = 6.1e-29, Sum P(2) = 6.1e-29
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 210 NNPSS-QKSRPHTLFASGPPSLQNAPQANGT--VGGP----VPPRPYANGAASGPISAVR 262
N PS+ + P F++ P+ P+ T V V PRP A AA+ AVR
Sbjct: 443 NKPSAIRPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQTVGPRPAA-AAAAAATPAVR 501
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 328 (120.5 bits), Expect = 7.3e-29, P = 7.3e-29
Identities = 69/175 (39%), Positives = 112/175 (64%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+GF+ +++ EA++ AI+ MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 225 (84.3 bits), Expect = 1.0e-17, P = 1.0e-17
Identities = 56/172 (32%), Positives = 97/172 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L + F +G ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D D G SRGFGF+S++ E + A++ MNG+ L + I V A KK
Sbjct: 220 -VKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269
Score = 224 (83.9 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 79/265 (29%), Positives = 123/265 (46%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L E F Q G ++V V D +G+GFV F ED
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD-HGKSRGFGFVSFERHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N L GK I V +A QD+ + G NL++ NLD
Sbjct: 244 AQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L F+ FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 304 GIDDERLRKEFTPFGSI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 182 RQITVSYAYKKDTKGERHGTPA--ERILAAN--NP--SSQKSRPHTLFASGPPSLQN--A 233
+ + V+ A +K+ + + H T +R+ + NP + + P + F + P QN A
Sbjct: 361 KPLYVALAQRKEER-QAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAA 419
Query: 234 PQANGTVGGPVP-PRPYANGAASGP 257
G + P PR A GA P
Sbjct: 420 YYPPGQIAQLRPSPRWTAQGARPHP 444
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 327 (120.2 bits), Expect = 9.2e-29, P = 9.2e-29
Identities = 71/175 (40%), Positives = 111/175 (63%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGPV+++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKPIR+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+ F+ +++ +A+D AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 235 (87.8 bits), Expect = 8.6e-19, P = 8.6e-19
Identities = 56/182 (30%), Positives = 103/182 (56%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S ++ ++ NLD + + L++ F G +++ V D N +GY FV F +++
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQD 149
Query: 78 DADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYD 130
AD AI+ +N + L + + V + S+ ++ ++GA N++I N D+D++ L +
Sbjct: 150 AADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKE 209
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS +G ++ K+M DP TG S+GFGF+S++ E ++ A+E MNG+ + + + V A
Sbjct: 210 LFSKYGKTLS-VKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQ 267
Query: 191 KK 192
KK
Sbjct: 268 KK 269
Score = 222 (83.2 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 61/194 (31%), Positives = 101/194 (52%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ + Y+ N + +E L ELF + G ++V V D T +G+GFV F ED
Sbjct: 185 AKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A+ A++ +N + GK + V +A Q++ S G NL+I NLD
Sbjct: 244 ANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + +
Sbjct: 304 TIDDEKLRKEFSPFGSI-TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 182 RQITVSYAYKKDTK 195
+ + V+ A +K+ +
Sbjct: 361 KPLYVALAQRKEER 374
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 76/190 (40%), Positives = 115/190 (60%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D T GY ++ F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N L G+PIR+ + +D +KS VG N+FI NL+ +D K LYDTFS FG I++
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKS-GVG-NIFIKNLEDSIDNKALYDTFSTFGNILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGT 201
K+ D + G SRGFGF+ +++ EA+ AI MNG L +R++ V + +K ++ ER
Sbjct: 129 -KVACD-EHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAE 182
Query: 202 PAERILAANN 211
R L N
Sbjct: 183 LGARALEFTN 192
Score = 213 (80.0 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 53/172 (30%), Positives = 97/172 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL+ + + L++ F G +++ V D + +G+GFV F + E A AI +N
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGS--RGFGFVHFETHEAAQQAINTMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V S+ ++ ++GA N+++ NL DVDE+ L D FS FG +++
Sbjct: 160 GMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+MRD ++G+SR FGF++++ E + A+ MNG+ + R + A K+
Sbjct: 220 -VKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 326 (119.8 bits), Expect = 2.0e-28, P = 2.0e-28
Identities = 77/204 (37%), Positives = 117/204 (57%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG LDP VTE +L+ELF Q G V ++ V +D VT GY +V + + D + A++
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 120
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + G+P R+ + +D G N+FI NLD +D K L+DTF+AFG I++ K
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC-K 179
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY-KKDTKGERHGTP 202
+ +D + GNS+G+GF+ Y++ EA+ AI+ +NG L +++ V + KKD + +
Sbjct: 180 VAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMK 238
Query: 203 AE--RILAAN-NPSSQKSRPHTLF 223
A I N NP TLF
Sbjct: 239 ANFTNIYVKNINPEVTDDEFRTLF 262
Score = 213 (80.0 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 53/177 (29%), Positives = 94/177 (53%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L + F G +++ V +D N +GYGFV + ++E A AIK +N
Sbjct: 152 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAASQAIKHVN 210
Query: 88 MIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L K + V K + K ++ AN +++ N++P+V + F +G VT
Sbjct: 211 GMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGD-VT 269
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
+ + RD +TG SRGFGF+++ S E + A++ +N + + + V A KK + E
Sbjct: 270 SSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREE 326
Score = 105 (42.0 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 101 ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDT 150
A Q+K S G NL+I NLD +VD++ L FS FG I T+ K+MRD T
Sbjct: 335 ARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPI-TSAKVMRDSIT 383
Score = 88 (36.0 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVT 62
Q A + Q Y+ NLD +V +E L +LF + GP+ + V +D +T
Sbjct: 337 QEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
Score = 83 (34.3 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 30/110 (27%), Positives = 50/110 (45%)
Query: 151 GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAAN 210
G S+GFGF+ + + + + A+ MN + + N+ + V+ A +KD + + E+ + A
Sbjct: 430 GKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQ----LEQSIQAR 485
Query: 211 NPSSQKSRPHTLFASG-PPSLQNAP--QANGTVGGPVPPR-----PYANG 252
N Q A+G P AP G+ G +PP PY G
Sbjct: 486 N---QLRMQQAAAAAGMPQQYMQAPVFYGPGSQPGFMPPAGGRGMPYPQG 532
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 322 (118.4 bits), Expect = 3.0e-28, P = 3.0e-28
Identities = 71/175 (40%), Positives = 110/175 (62%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L VTE +L+E F AGPV+++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKPIR+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+ F+ +++ EA+D AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 247 (92.0 bits), Expect = 4.1e-20, P = 4.1e-20
Identities = 60/182 (32%), Positives = 104/182 (57%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S ++ ++ NLD + + L++ F G +++ V D N +GY FV F ++E
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQE 149
Query: 78 DADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYD 130
AD AI+ +N + L + + V + S+ ++ ++GA N++I N +VD++ L +
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKE 209
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS FG ++ K+MRDP+ G S+GFGF+SY+ E ++ A+E MNG+ + + I V A
Sbjct: 210 LFSQFGKTLS-VKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
Query: 191 KK 192
KK
Sbjct: 268 KK 269
Score = 228 (85.3 bits), Expect = 4.7e-18, P = 4.7e-18
Identities = 62/194 (31%), Positives = 103/194 (53%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ + Y+ N +V +E L ELF Q G ++V V +D +G+GFV + ED
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A+ A++ +N ++ GK I V +A Q++ S G NL+I NLD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + +
Sbjct: 304 TIDDEKLRKEFSPFGSI-TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 182 RQITVSYAYKKDTK 195
+ + V+ A +K+ +
Sbjct: 361 KPLYVALAQRKEER 374
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 322 (118.4 bits), Expect = 3.2e-28, P = 3.2e-28
Identities = 71/175 (40%), Positives = 110/175 (62%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L VTE +L+E F AGPV+++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKPIR+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+ F+ +++ EA+D AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 248 (92.4 bits), Expect = 3.4e-20, P = 3.4e-20
Identities = 60/182 (32%), Positives = 104/182 (57%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S ++ ++ NLD + + L++ F G +++ V D N +GY FV F ++E
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQE 149
Query: 78 DADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYD 130
AD AI+ +N + L + + V + S+ ++ ++GA N++I N +VD++ L +
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKE 209
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS FG ++ K+MRDP +G S+GFGF+SY+ E ++ A+E MNG+ + + I V A
Sbjct: 210 LFSQFGKTLS-VKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
Query: 191 KK 192
KK
Sbjct: 268 KK 269
Score = 230 (86.0 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 62/194 (31%), Positives = 104/194 (53%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ + Y+ N +V +E L ELF Q G ++V V +D + +G+GFV + ED
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A+ A++ +N ++ GK I V +A Q++ S G NL+I NLD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + +
Sbjct: 304 TIDDEKLRKEFSPFGSI-TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 182 RQITVSYAYKKDTK 195
+ + V+ A +K+ +
Sbjct: 361 KPLYVALAQRKEER 374
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 322 (118.4 bits), Expect = 3.2e-28, P = 3.2e-28
Identities = 71/175 (40%), Positives = 110/175 (62%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L VTE +L+E F AGPV+++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKPIR+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+ F+ +++ EA+D AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 247 (92.0 bits), Expect = 4.4e-20, P = 4.4e-20
Identities = 60/182 (32%), Positives = 104/182 (57%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S ++ ++ NLD + + L++ F G +++ V D N +GY FV F ++E
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQE 149
Query: 78 DADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYD 130
AD AI+ +N + L + + V + S+ ++ ++GA N++I N +VD++ L +
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKE 209
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS FG ++ K+MRDP +G S+GFGF+SY+ E ++ A+E MNG+ + + I V A
Sbjct: 210 LFSQFGKTLS-VKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
Query: 191 KK 192
KK
Sbjct: 268 KK 269
Score = 229 (85.7 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 62/194 (31%), Positives = 104/194 (53%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ + Y+ N +V +E L ELF Q G ++V V +D + +G+GFV + ED
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A+ A++ +N ++ GK I V +A Q++ S G NL+I NLD
Sbjct: 244 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + +
Sbjct: 304 TIDDEKLRKEFSPFGSI-TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 182 RQITVSYAYKKDTK 195
+ + V+ A +K+ +
Sbjct: 361 KPLYVALAQRKEER 374
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 322 (118.4 bits), Expect = 3.5e-28, P = 3.5e-28
Identities = 71/175 (40%), Positives = 110/175 (62%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L VTE +L+E F AGPV+++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKPIR+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+ F+ +++ EA+D AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 247 (92.0 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 60/182 (32%), Positives = 104/182 (57%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S ++ ++ NLD + + L++ F G +++ V D N +GY FV F ++E
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQE 149
Query: 78 DADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYD 130
AD AI+ +N + L + + V + S+ ++ ++GA N++I N +VD++ L +
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKE 209
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS FG ++ K+MRDP+ G S+GFGF+SY+ E ++ A+E MNG+ + + I V A
Sbjct: 210 LFSQFGKTLS-VKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
Query: 191 KK 192
KK
Sbjct: 268 KK 269
Score = 228 (85.3 bits), Expect = 5.1e-18, P = 5.1e-18
Identities = 62/194 (31%), Positives = 103/194 (53%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ + Y+ N +V +E L ELF Q G ++V V +D +G+GFV + ED
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A+ A++ +N ++ GK I V +A Q++ S G NL+I NLD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + +
Sbjct: 304 TIDDEKLRKEFSPFGSI-TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 182 RQITVSYAYKKDTK 195
+ + V+ A +K+ +
Sbjct: 361 KPLYVALAQRKEER 374
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 322 (118.4 bits), Expect = 3.5e-28, P = 3.5e-28
Identities = 71/175 (40%), Positives = 110/175 (62%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L VTE +L+E F AGPV+++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKPIR+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+ F+ +++ EA+D AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 247 (92.0 bits), Expect = 4.6e-20, P = 4.6e-20
Identities = 60/182 (32%), Positives = 104/182 (57%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S ++ ++ NLD + + L++ F G +++ V D N +GY FV F ++E
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQE 149
Query: 78 DADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYD 130
AD AI+ +N + L + + V + S+ ++ ++GA N++I N +VD++ L +
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKE 209
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS FG ++ K+MRDP +G S+GFGF+SY+ E ++ A+E MNG+ + + I V A
Sbjct: 210 LFSQFGKTLS-VKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQ 267
Query: 191 KK 192
KK
Sbjct: 268 KK 269
Score = 229 (85.7 bits), Expect = 4.0e-18, P = 4.0e-18
Identities = 62/194 (31%), Positives = 104/194 (53%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ + Y+ N +V +E L ELF Q G ++V V +D + +G+GFV + ED
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A+ A++ +N ++ GK I V +A Q++ S G NL+I NLD
Sbjct: 244 ANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + +
Sbjct: 304 TIDDEKLRKEFSPFGSI-TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 182 RQITVSYAYKKDTK 195
+ + V+ A +K+ +
Sbjct: 361 KPLYVALAQRKEER 374
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 287 (106.1 bits), Expect = 4.7e-28, Sum P(2) = 4.7e-28
Identities = 70/181 (38%), Positives = 108/181 (59%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
++ YVG+L P+V+E+ L+E+F Q G V N+ V +D T Y +V + + DA+ A+
Sbjct: 10 SSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALD 69
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + GK R+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 70 TLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSC-K 128
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPA 203
++ D D +S+GFGF+ Y++ E++D AI +NG + +++ V K +K ER G P
Sbjct: 129 VVTD-DGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPF--KSSK-ER-GQPT 183
Query: 204 E 204
E
Sbjct: 184 E 184
Score = 219 (82.2 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
Identities = 67/237 (28%), Positives = 110/237 (46%)
Query: 31 NLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK 90
NL V + L EL Q G + N+ + D +G+GF F S E A ++ N
Sbjct: 194 NLSEDVGPDQLKELLQQYGEITNITIMADD-KGKSKGFGFANFESAEAAKNVVENENGKI 252
Query: 91 LYGKPI-------RVNKASQDKKSLDV---GANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+GKPI ++ + ++ K + + G NL+I N+D +D L + FS FG I T
Sbjct: 253 FHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTI-T 311
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHG 200
+ +M+D S+GFGF+ Y + + + A+ MNG+ + + + V+ A +KD + +
Sbjct: 312 SAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLE 371
Query: 201 TPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYA-NGAASG 256
++ ++ P T + SGP AP V + PRP NG G
Sbjct: 372 MQHQQKFKTG---IRQQMPPT-YGSGPVFFTPAPVNPQVVYQQMMPRPRNWNGQPVG 424
Score = 207 (77.9 bits), Expect = 9.4e-18, Sum P(2) = 9.4e-18
Identities = 56/179 (31%), Positives = 94/179 (52%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S ++ ++ NLD + + L++ F G +++ V D N +G+GFV + ++E
Sbjct: 91 SLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDD-GNSSKGFGFVHYETQE 149
Query: 78 DADYAIKVLNMIKLYGKPIRVN--KASQDK-KSLDVG-ANLFIGNLDPDVDEKLLYDTFS 133
AD AI +N + + G+ + V K+S+++ + +V N+F NL DV L +
Sbjct: 150 SADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQ 209
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
+G I TN IM D D G S+GFGF +++S EA+ +E NG+ + I A KK
Sbjct: 210 QYGEI-TNITIMAD-DKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKK 266
Score = 107 (42.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 16 QHSAE-RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
+H+ E + Q Y+ N+D + + L E+F Q G + + V KD +G+GFV +
Sbjct: 274 KHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYT 333
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQ 103
+ ++A A+ +N + KP+ V A +
Sbjct: 334 APDEATRAVTEMNGRMIGTKPLYVALAQR 362
Score = 106 (42.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 20/91 (21%), Positives = 54/91 (59%)
Query: 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDA 169
+ ++L++G+L P+V E+ L++ F+ G +V+N ++ RD +T S + +++Y + ++
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVG-LVSNIRVCRDTNTRRSLSYAYVNYYNGADAER 66
Query: 170 AIEAMNGQYLCNRQITVSYAYKKDTKGERHG 200
A++ +N + + + ++ ++D + G
Sbjct: 67 ALDTLNNTPIRGKACRIMWS-QRDPSLRKSG 96
Score = 55 (24.4 bits), Expect = 4.7e-28, Sum P(2) = 4.7e-28
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 223 FASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPI 258
+A G P QN P+ NG PRP +GA P+
Sbjct: 435 YARGQPR-QNGPRQNGGQPRQNGPRPDVSGAQPIPV 469
Score = 37 (18.1 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 284 WQGQPQHIGQG 294
W GQP + QG
Sbjct: 418 WNGQPVGVPQG 428
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 77/228 (33%), Positives = 123/228 (53%)
Query: 26 TAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
+ Y GN+ QVTE LL E+F GP+ + + KD+ YGFV + A AI
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDK-----SSYGFVHYFDRRCASMAIM 118
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVT-- 140
LN ++G+P++VN A + D + N+F+G+L P+V + L+D+FSAF +
Sbjct: 119 TLNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYY 178
Query: 141 -NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE-R 198
+ ++M D TG SRGFGF+S+ + + + AI MNG+++ +RQI ++A K T GE +
Sbjct: 179 RDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDK 238
Query: 199 HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 246
H + + ++ N SS+ R S + +N PQ G + P
Sbjct: 239 HSSDGKSVVELTNGSSEDGRE----LSNEDAPENNPQFTTVYVGNLSP 282
Score = 115 (45.5 bits), Expect = 0.00052, P = 0.00052
Identities = 33/133 (24%), Positives = 62/133 (46%)
Query: 66 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDE 125
+G F E + D +++ N G+ + A ++ +++GNL P+V +
Sbjct: 230 KGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQF---TTVYVGNLSPEVTQ 286
Query: 126 KLLYDTFSAFGV-IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ-YLCNRQ 183
L+ F G ++ ++ RD +GFGF+ Y++ + + AI+ N Q +L +RQ
Sbjct: 287 LDLHRLFYTLGAGVIEEVRVQRD------KGFGFVRYNTHDEAALAIQMGNAQPFLFSRQ 340
Query: 184 ITVSYAYKKDTKG 196
I S+ K G
Sbjct: 341 IRCSWGNKPTPSG 353
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 318 (117.0 bits), Expect = 7.8e-28, P = 7.8e-28
Identities = 76/190 (40%), Positives = 116/190 (61%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D T GY ++ F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N + G+PIR+ + +D +KS VG N+FI NL+ +D K LYDTFS FG I++
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKS-GVG-NVFIKNLEDSIDNKALYDTFSTFGNILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGT 201
K++ D D G SRGFGF+ +++ EA+ AI MNG L +R++ V + +K ++ ER
Sbjct: 129 -KVVCD-DHG-SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGH-FK--SRREREAE 182
Query: 202 PAERILAANN 211
R L N
Sbjct: 183 LGARALEFTN 192
Score = 237 (88.5 bits), Expect = 4.9e-19, P = 4.9e-19
Identities = 57/172 (33%), Positives = 100/172 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL+ + + L++ F G +++ V D + +G+GFV F + E A AI+ +N
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEAAQNAIRTMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V S+ ++ ++GA N+++ NL DVDE+ L D FS FG I++
Sbjct: 160 GMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+MRD D+G+SRGFGF++++ E + A+ MNG+ + R + V A K+
Sbjct: 220 -VKVMRD-DSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKR 269
Score = 228 (85.3 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 76/259 (29%), Positives = 126/259 (48%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YV NL V E L +LF Q G +++V V +D + +G+GFV F EDA A+ +N
Sbjct: 194 YVKNLHVDVDERCLQDLFSQFGKILSVKVMRDD-SGHSRGFGFVNFEKHEDAQKAVTDMN 252
Query: 88 MIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYD 130
++ G+ + V +A QD+ + G NL++ NLD +D++ L
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
F+ +G+I T+ K+M + G+S+GFGF+ + S E + A+ MNG+ + + + V+ A
Sbjct: 313 EFAPYGMI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 191 KKDTKG----ERHGTPAERILAANNP---SSQKSRPHTLFASGPPSLQNAPQANGTVGGP 243
+K+ + ++ + A +P S Q+ + L A P Q+ A+G P
Sbjct: 370 RKEERKAILTNQYIQRLSTMRALGSPLLGSLQQPTSYFLPAVPQPPAQSPYYASGPPVQP 429
Query: 244 VPPRPYANGAASGPISAVR 262
PPR A S VR
Sbjct: 430 -PPRWTAQPPRPSSASVVR 447
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 62/175 (35%), Positives = 108/175 (61%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ + +D +T+ Y +V F+ +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+F+ NLD ++ K LYDT SAFG I++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
+ D S+G+GF+ +++ EA++ AI+ MNG L R++ V + +K+ + E
Sbjct: 131 VC---DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 59/172 (34%), Positives = 99/172 (57%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NLD + + L++ G +++ V D N +GYGFV F + E A+ AIK +N
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L G+ + V + S+ ++ ++GA N++I N D+D++ L D F FG ++
Sbjct: 160 GMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 45/163 (27%), Positives = 77/163 (47%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQ-GY-GFVEFRSE 76
A + Y+ N + +E L +LF + GP ++V V D G+ F
Sbjct: 185 ARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDA 244
Query: 77 EDA--DYAIKVLNMIKLY-GKPIR-VNKASQDKKSLDVG----------ANLFIGNLDPD 122
+ A + K LN ++Y G+ + V + ++ K++ + NL++ NLD
Sbjct: 245 QKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDG 304
Query: 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFE 165
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E
Sbjct: 305 IDDERLRKAFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPE 344
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 62/175 (35%), Positives = 108/175 (61%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ + +D +T+ Y +V F+ +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+F+ NLD ++ K LYDT SAFG I++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
+ D S+G+GF+ +++ EA++ AI+ MNG L R++ V + +K+ + E
Sbjct: 131 VC---DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 52/157 (33%), Positives = 91/157 (57%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NLD + + L++ G +++ V D N +GYGFV F + E A+ AIK +N
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L G+ + V + S+ ++ ++GA N++I N D+D++ L D F FG ++
Sbjct: 160 GMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 177
K+M D ++G S+GFGF+S++ E + A++ MNG+
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 317 (116.6 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 76/190 (40%), Positives = 115/190 (60%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D T GY ++ F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N L G+PIR+ + +D +KS VG N+FI NL+ +D K LYDTFS FG I++
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKS-GVG-NIFIKNLEDSIDNKALYDTFSTFGNILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGT 201
K+ D + G SRGFGF+ +++ EA+ AI MNG L +R++ V + +K ++ ER
Sbjct: 129 -KVACD-EHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAE 182
Query: 202 PAERILAANN 211
R L N
Sbjct: 183 LGARALEFTN 192
Score = 213 (80.0 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 53/172 (30%), Positives = 97/172 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL+ + + L++ F G +++ V D + +G+GFV F + E A AI +N
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGS--RGFGFVHFETHEAAQQAINTMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V S+ ++ ++GA N+++ NL DVDE+ L D FS FG +++
Sbjct: 160 GMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+MRD ++G+SR FGF++++ E + A+ MNG+ + R + A K+
Sbjct: 220 -VKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR 269
Score = 208 (78.3 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 71/245 (28%), Positives = 120/245 (48%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YV NL V E+ L +LF Q G +++V V +D + + +GFV F E+A A+ +N
Sbjct: 194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 88 MIKLYGKPI-------RVNKASQDKKSLDV----------GANLFIGNLDPDVDEKLLYD 130
++ G+ + RV + ++ K+ + G NL++ NLD +D+ L
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS +GVI T+ K+M + G+S+GFGF+ + S E + A+ MNG+ + + + V+ A
Sbjct: 313 EFSPYGVI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 191 KKDTKG----ERHGTPAERILAANNP---SSQKSRPHTLFASGPPSLQNAPQANGTVGGP 243
+K+ + ++ + +NP S Q+ + L A P Q A G V P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAYYGCGPVT-P 428
Query: 244 VPPRP 248
P P
Sbjct: 429 TQPAP 433
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 317 (116.6 bits), Expect = 1.1e-27, P = 1.1e-27
Identities = 71/185 (38%), Positives = 110/185 (59%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
G+ S A+ YVG L+P V E L+E+F G V ++ V +D V+ GY +V +
Sbjct: 42 GESSGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYH 101
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFS 133
ED + AI+ LN + G+P R+ + +D + G N+FI NL P +D K L+DTFS
Sbjct: 102 KYEDGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFS 161
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKK 192
AFG I++ K+ D + G S+ FGF+ Y++ EA++AAIE +NG L +R++ V + KK
Sbjct: 162 AFGKILSC-KVATD-EFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKK 219
Query: 193 DTKGE 197
D + +
Sbjct: 220 DRESK 224
Score = 242 (90.2 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 75/247 (30%), Positives = 116/247 (46%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YV N+D +EE +LF G + ++Y+ KD+ +G+GFV F E A A++ LN
Sbjct: 236 YVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQ-DGKSKGFGFVNFEDHESAVKAVEELN 294
Query: 88 MIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYD 130
++ G+ I V +A + ++ L+ G NLF+ NLD +D + L +
Sbjct: 295 DKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEE 354
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
F FG I T+ K+M D + G S+GFGF+ + + E + AI MN + + + + V+ A
Sbjct: 355 EFKPFGTI-TSAKVMVD-EAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQ 412
Query: 191 KKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYA 250
+KD R ++I A N Q + A G P P G G PP
Sbjct: 413 RKDV---RRSQLEQQIQARNQMRMQNAA-----AGGLPGQFIPPMFYGQQGF-FPPNGRG 463
Query: 251 NGAASGP 257
N GP
Sbjct: 464 NAPYPGP 470
Score = 198 (74.8 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 53/182 (29%), Positives = 100/182 (54%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
SA R+ D ++ NL P + + L + F G +++ V D + +GFV + + E
Sbjct: 133 SARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQ-SKCFGFVHYETAE 191
Query: 78 DADYAIKVLNMIKLYGKPIRVNK--ASQDKKSL--DVGAN---LFIGNLDPDVDEKLLYD 130
A+ AI+ +N + L + + V K + +D++S ++ AN +++ N+D + E+
Sbjct: 192 AAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEK 251
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS FG I T+ + +D D G S+GFGF++++ E++ A+E +N + + ++I V A
Sbjct: 252 LFSPFGKI-TSIYLEKDQD-GKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQ 309
Query: 191 KK 192
KK
Sbjct: 310 KK 311
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 317 (116.6 bits), Expect = 1.1e-27, P = 1.1e-27
Identities = 70/175 (40%), Positives = 110/175 (62%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L VTE +L+E F AGPV+++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKPIR+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+ F+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 234 (87.4 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 58/182 (31%), Positives = 103/182 (56%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S ++ ++ NLD + + L++ F G +++ V D N +GY FV F ++E
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQE 149
Query: 78 DADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYD 130
A+ AI+ +N + L + + V + S+ ++ ++GA N++I N +VD++ L +
Sbjct: 150 AANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRE 209
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS FG ++ K+MRD +G S+GFGF+SY+ E ++ A+E MNG+ + + I V A
Sbjct: 210 LFSQFGKTLS-VKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQ 267
Query: 191 KK 192
KK
Sbjct: 268 KK 269
Score = 231 (86.4 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 62/194 (31%), Positives = 104/194 (53%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ + Y+ N +V +E L ELF Q G ++V V +D + +G+GFV + ED
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A+ A++ +N ++ GK I V +A Q++ S G NL+I NLD
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + +
Sbjct: 304 TIDDEKLRKEFSPFGSI-TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 182 RQITVSYAYKKDTK 195
+ + V+ A +K+ +
Sbjct: 361 KPLYVALAQRKEER 374
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 317 (116.6 bits), Expect = 1.1e-27, P = 1.1e-27
Identities = 67/175 (38%), Positives = 111/175 (63%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + G+P+R+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+GF+ +++ EA++ AI+ MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 230 (86.0 bits), Expect = 3.0e-18, P = 3.0e-18
Identities = 77/265 (29%), Positives = 124/265 (46%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L E+F + GP ++V V D +G+GFV F ED
Sbjct: 185 ARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N + GK + V +A QD+ + G NL++ NLD
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L F FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 304 GIDDERLRKEFLPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 182 RQITVSYAYKKDTKGERHGTPA--ERILAAN--NP--SSQKSRPHTLFASGPPSLQN--A 233
+ + V+ A +K+ + + H T +R+ + NP + + P + F + P QN A
Sbjct: 361 KPLYVALAQRKEER-QAHLTNQYMQRMASVRVPNPVINPYQPPPSSYFMAAIPPAQNRAA 419
Query: 234 PQANGTVGGPVP-PRPYANGAASGP 257
G + P PR A GA P
Sbjct: 420 YYPPGQIAQLRPSPRWTAQGARPHP 444
Score = 215 (80.7 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 52/172 (30%), Positives = 97/172 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D++++ L + F +G ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D D G S+GFGF+S++ E + A++ MNG+ + + + V A KK
Sbjct: 220 -VKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 317 (116.6 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 70/175 (40%), Positives = 110/175 (62%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L VTE +L+E F AGPV+++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKPIR+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+ F+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 234 (87.4 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 58/182 (31%), Positives = 103/182 (56%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S ++ ++ NLD + + L++ F G +++ V D N +GY FV F ++E
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQE 149
Query: 78 DADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYD 130
A+ AI+ +N + L + + V + S+ ++ ++GA N++I N +VD++ L +
Sbjct: 150 AANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRE 209
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS FG ++ K+MRD +G S+GFGF+SY+ E ++ A+E MNG+ + + I V A
Sbjct: 210 LFSQFGKTLS-VKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQ 267
Query: 191 KK 192
KK
Sbjct: 268 KK 269
Score = 231 (86.4 bits), Expect = 2.5e-18, P = 2.5e-18
Identities = 62/194 (31%), Positives = 104/194 (53%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ + Y+ N +V +E L ELF Q G ++V V +D + +G+GFV + ED
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A+ A++ +N ++ GK I V +A Q++ S G NL+I NLD
Sbjct: 244 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + +
Sbjct: 304 TIDDEKLRKEFSPFGSI-TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 182 RQITVSYAYKKDTK 195
+ + V+ A +K+ +
Sbjct: 361 KPLYVALAQRKEER 374
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 316 (116.3 bits), Expect = 1.4e-27, P = 1.4e-27
Identities = 69/167 (41%), Positives = 110/167 (65%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ Y+G+L P VTE +L+E F AGP++++ V +D T GY ++ F+ DA+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N + G+PIR+ + +D +KS VG N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKS-GVG-NVFIKNLDDSIDNKALYDTFSAFGDILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188
K++ D + G SRG+GF+ +++ EA++ AI+ MNG L +R++ V +
Sbjct: 129 -KVVCD-EYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH 172
Score = 238 (88.8 bits), Expect = 4.1e-19, P = 4.1e-19
Identities = 59/178 (33%), Positives = 103/178 (57%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D + +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGS--RGYGFVHFETQEAANRAIQTMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V S+ ++ L+ GA N++I N D+D+K L + FSAFG ++
Sbjct: 160 GMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGE 197
K+M D ++G SRGFGF++Y + E + A+ MNG+ + R + V A K+ + +GE
Sbjct: 220 -VKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGE 275
Score = 194 (73.4 bits), Expect = 5.4e-13, P = 5.4e-13
Identities = 52/197 (26%), Positives = 101/197 (51%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
++ A+ + Y+ N + ++ L E+F G ++V V D + +G+GFV + +
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGN 240
Query: 76 EEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGN 118
E+A A+ +N ++ G+ + V +A Q++ + G NL++ N
Sbjct: 241 HEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKN 300
Query: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 178
LD +D+ L FS +G I T+ K+M + G+S+GFGF+ + S E + A+ MNG+
Sbjct: 301 LDDGIDDDRLRKEFSPYGTI-TSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 179 LCNRQITVSYAYKKDTK 195
+ + + V+ A +K+ +
Sbjct: 358 VSTKPLYVALAQRKEER 374
Score = 124 (48.7 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
A+L+IG+L PDV E +LY+ FS G I++ ++ RD T S G+ +I++ ++ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSI-RVCRDIATRRSLGYAYINFQQPADAERAL 69
Query: 172 EAMNGQYLCNRQITVSYAYK 191
+ MN + + R I + ++ +
Sbjct: 70 DTMNFEVIKGRPIRIMWSQR 89
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 315 (115.9 bits), Expect = 2.4e-27, P = 2.4e-27
Identities = 62/163 (38%), Positives = 105/163 (64%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ Y+G+L P V+E +L+E F AGPV+++ V +D + L GY +V F+ DA+ A+
Sbjct: 57 ASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALD 116
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N ++G+P+R+ + +D + G N+FI NLD +D K +YDTFS FG I++ K
Sbjct: 117 TMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSC-K 175
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186
+ D D GNS+G+GF+ +++ ++ AIE +NG L ++++ V
Sbjct: 176 VATD-DEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
Score = 190 (71.9 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 56/187 (29%), Positives = 96/187 (51%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
+A R + ++ NLD + + +++ F G +++ V D N +GYGFV F +E
Sbjct: 138 AARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGN-SKGYGFVHFETEH 196
Query: 78 DADYAIKVLNMIKLYGKPIRVNK---ASQDKKSL-DVG---ANLFIGNLDPDVDEKLLYD 130
A AI+ +N + L K + V K +Q K L + G N+F+ N +D++ L
Sbjct: 197 SAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSA 256
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSY 188
FS FG I T+ +M D G +GFGF+++ +A+ A+E +N L + +++V
Sbjct: 257 MFSKFGEI-TSAVVMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCR 314
Query: 189 AYKKDTK 195
A KK +
Sbjct: 315 AQKKSER 321
Score = 150 (57.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 44/142 (30%), Positives = 74/142 (52%)
Query: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
G NL++ N++ D+++ L D FS+FG I T+ K+M D + G S+GFGF+ ++ E + AA
Sbjct: 342 GVNLYVKNIEEDLNDDGLRDHFSSFGTI-TSAKVMVD-ENGRSKGFGFVCFEKPEEATAA 399
Query: 171 IEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSL 230
+ MN + + + + V+ A +K+ + + + + LA Q ASG P++
Sbjct: 400 VTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQ--------ASGVPAM 451
Query: 231 QNAPQANGTVGGPVPPRPYANG 252
Q G G VP A G
Sbjct: 452 TQLYQP-GQQGYFVPNPMNAQG 472
Score = 117 (46.2 bits), Expect = 0.00060, P = 0.00060
Identities = 24/89 (26%), Positives = 53/89 (59%)
Query: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
A+L+IG+L PDV E +L++ FS G +++ ++ RD + S G+ ++++ ++ A+
Sbjct: 57 ASLYIGDLHPDVSEAMLFEKFSMAGPVLSI-RVCRDNTSRLSLGYAYVNFQQPADAERAL 115
Query: 172 EAMNGQYLCNRQITVSYAYKKDTKGERHG 200
+ MN + + R + + ++ ++D R G
Sbjct: 116 DTMNFEVIHGRPMRIMWS-QRDPAARRAG 143
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 314 (115.6 bits), Expect = 2.6e-27, P = 2.6e-27
Identities = 70/167 (41%), Positives = 107/167 (64%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D T GY ++ F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N + G+PIR+ + +D +KS VG N+FI NL+ +D K LYDTFS FG I++
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKS-GVG-NIFIKNLEDSIDNKALYDTFSTFGNILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188
K++ D D G SRGFGF+ +++ EA+ AI MNG L +R++ V +
Sbjct: 129 -KVVCD-DHG-SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGH 172
Score = 228 (85.3 bits), Expect = 5.1e-18, P = 5.1e-18
Identities = 56/172 (32%), Positives = 99/172 (57%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL+ + + L++ F G +++ V D + +G+GFV F + E A AI +N
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCD--DHGSRGFGFVHFETHEAAQQAITTMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V S+ ++ +++GA N+++ NL DVDE+ L D FS FG +++
Sbjct: 160 GMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+MRD D+G+SRGFGF+++ E + A+ MNG+ + R + V A K+
Sbjct: 220 -VKVMRD-DSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKR 269
Score = 219 (82.2 bits), Expect = 4.8e-17, P = 4.8e-17
Identities = 59/185 (31%), Positives = 102/185 (55%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YV NL V E+ L +LF + G +++V V +D + +G+GFV F+ E+A A+ +N
Sbjct: 194 YVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDD-SGHSRGFGFVNFQKHEEAQKAVMDMN 252
Query: 88 MIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYD 130
++ G+ + V +A QD+ + G NL++ NLD +D++ L
Sbjct: 253 GKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS +GVI T+ K+M + G+S+GFGF+ + S E + A+ MNG+ L + + V+ A
Sbjct: 313 EFSPYGVI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQ 369
Query: 191 KKDTK 195
+K+ +
Sbjct: 370 RKEER 374
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 24/80 (30%), Positives = 49/80 (61%)
Query: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
A+L++G+L PDV E +LY+ FS G I++ ++ RD T S G+ +I++ ++ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSI-RVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 172 EAMNGQYLCNRQITVSYAYK 191
+ MN + + + I + ++ +
Sbjct: 70 DTMNFEVIKGQPIRIMWSQR 89
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 71/184 (38%), Positives = 112/184 (60%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L VTE+LL+ F GPV+++ + +D +++ GYG+V F DA A++
Sbjct: 10 ASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALE 69
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N + GK IR+ + +D +KS +G N+FI NLD +D K LY+ FS FG I+++
Sbjct: 70 TMNFDLIKGKSIRLMWSQRDACLRKS-GIG-NVFIKNLDKSIDNKTLYEHFSPFGKIMSS 127
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGERHG 200
K+M D + S+G+GF+ Y A+D AIE MNG+ L + + V+ + +KD + E
Sbjct: 128 -KVMTDEE--GSKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELRE 184
Query: 201 TPAE 204
PAE
Sbjct: 185 KPAE 188
Score = 201 (75.8 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 55/172 (31%), Positives = 97/172 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L+E F G +++ V D + +GYGFV ++ + AD AI+ +N
Sbjct: 101 FIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGS--KGYGFVHYQDQRAADRAIEEMN 158
Query: 88 MIKLYGKPIRVN--KASQDKKS--LDVGA---NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
L + V K+ +D+++ + A N++I N D+D++ L FS +G ++
Sbjct: 159 GKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLS 218
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M+D +G S+ FGF+S+DS +A+ A+E MNG+ + + I V A KK
Sbjct: 219 -VKVMKDA-SGKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKK 268
Score = 168 (64.2 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 55/181 (30%), Positives = 89/181 (49%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Y+ N + +E L +F + G ++V V KD + + +GFV F S + A A++ +N
Sbjct: 193 YIKNFGDDMDDESLRSVFSKYGQTLSVKVMKD-ASGKSKRFGFVSFDSHKAAKNAVEDMN 251
Query: 88 MIKLYGKPIRVNKAS--------------QDKKS---LDVGANLFIGNLDPDVDEKLLYD 130
+ G+ I V +A Q KK A L+I NLD +D++ L
Sbjct: 252 GRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRK 311
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS FG I K+M++ G S+GFG I + S EA+ A+ MNG+ L ++ + ++
Sbjct: 312 EFSVFGSIC-RVKVMQE--AGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIALGQ 368
Query: 191 K 191
K
Sbjct: 369 K 369
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 312 (114.9 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 69/175 (39%), Positives = 109/175 (62%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY V F DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NL+ +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAE 182
Score = 224 (83.9 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 79/268 (29%), Positives = 127/268 (47%)
Query: 21 RNQDAT-AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
R ++ T Y+ N ++ ++ L LF + G V++V V D +G+GFV F EDA
Sbjct: 186 RTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDE-GGKSKGFGFVSFERHEDA 244
Query: 80 DYAIKVLNMIKLYGKPIRVNKA-----------------SQDKKSLDVGANLFIGNLDPD 122
A+ +N +L GK I V A +QD+ G NL++ NLD
Sbjct: 245 QKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDG 304
Query: 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNR 182
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + +
Sbjct: 305 IDDERLQKEFSPFGTI-TSTKVMTEG--GRSKGFGFVCFSSPEEATKAVSEMNGRIVATK 361
Query: 183 QITVSYAYKKDTKGERHGTPA--ERILAANN-PSS----QKSRPHTLFASGPPSLQN-AP 234
+ V+ A +K+ + + H T +R+ + + P+S + P + P QN AP
Sbjct: 362 PLYVALAQRKEER-QAHLTNQYIQRMASVRSGPNSLINAYQPAPSGYSVAAVPQTQNCAP 420
Query: 235 QANGTVGGPVPPRPY-ANGAASGPISAV 261
+ P P + A GA P V
Sbjct: 421 CCPSQIVQPSPSTRWTAQGARPHPFPNV 448
Score = 213 (80.0 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 55/182 (30%), Positives = 99/182 (54%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S R+ ++ NL+ + + L++ F G +++ V D N +G+GFV F +EE
Sbjct: 92 SLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDE--NGSKGHGFVHFETEE 149
Query: 78 DADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYD 130
A+ AI+ +N + L + + V + S+ ++ ++G N++I N +D+K L
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNG 209
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
F FG +++ K+M D + G S+GFGF+S++ E + A++ MNG+ L + I V A
Sbjct: 210 LFGRFGQVLS-VKVMTD-EGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQ 267
Query: 191 KK 192
KK
Sbjct: 268 KK 269
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 286 (105.7 bits), Expect = 4.0e-27, Sum P(2) = 4.0e-27
Identities = 60/177 (33%), Positives = 105/177 (59%)
Query: 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
D YVGNLD +TE++L + F GP+ N+ + D+ N + Y FVE+ DA+ A+
Sbjct: 74 DRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIAL 132
Query: 84 KVLNMIKLYGKPIRVNKASQDKKSL-DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 142
+ LN ++ +++N A Q ++S D NLF+G+L+ +VD++ L + F F ++
Sbjct: 133 QTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSG- 191
Query: 143 KIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
+M D TG+SRG+GF+S+ S + + A+++M GQ L R + +++A K+D +
Sbjct: 192 HVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNN 248
Score = 115 (45.5 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 29/88 (32%), Positives = 48/88 (54%)
Query: 18 SAERNQDAT--AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
S + + D T +VG+L+ V +E L F ++ +V D T +GYGFV F S
Sbjct: 153 SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTS 212
Query: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQ 103
++DA A+ + L G+P+R+N A++
Sbjct: 213 QDDAQNAMDSMQGQDLNGRPLRINWAAK 240
Score = 49 (22.3 bits), Expect = 5.6e-05, Sum P(2) = 5.6e-05
Identities = 23/85 (27%), Positives = 35/85 (41%)
Query: 93 GKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD 149
G P +VN + D + + +IGN+ E L F FG I+ P+
Sbjct: 319 GLPPQVNPQAVDHIIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILD---FKHYPE 375
Query: 150 TGNSRGFGFISYDSFEASDAAIEAM 174
+G FI YD+ E + I A+
Sbjct: 376 ----KGCCFIKYDTHEQAAVCIVAL 396
Score = 39 (18.8 bits), Expect = 4.0e-27, Sum P(2) = 4.0e-27
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 212 PSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYA 250
P S P + A PS Q PQ + T+G P P A
Sbjct: 293 PPSSMGMP--IGAMPLPS-QGQPQQSQTIGLPPQVNPQA 328
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 312 (114.9 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 67/175 (38%), Positives = 110/175 (62%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L VTE +L+E F AG ++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + G+P+R+ + +D G N+FI NLD +D K LYDTFSAFG I++ K
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D + G S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 130 VVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 224 (83.9 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 55/172 (31%), Positives = 98/172 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D+ L D FS +G ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
++M D + G SRGFGF+S++ E + A++ MNG+ + + I V A KK
Sbjct: 220 I-RVMTD-ENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKK 269
Score = 224 (83.9 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 69/239 (28%), Positives = 114/239 (47%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + ++ L ++F + G +++ V D +G+GFV F ED
Sbjct: 185 ARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDE-NGKSRGFGFVSFERHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N ++ GK I V +A QD+ + G NL++ NLD
Sbjct: 244 AQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M D G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 304 GIDDERLRKEFSPFGTI-TSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 182 RQITVSYAYKKDTKGERHGTPA--ER---ILAANNP---SSQKSRPHTLFASGPPSLQN 232
+ + V+ A +K+ + + H T +R + A NP Q + P F + P QN
Sbjct: 361 KPLYVALAQRKEER-QAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQAQN 418
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 311 (114.5 bits), Expect = 5.1e-27, P = 5.1e-27
Identities = 70/177 (39%), Positives = 113/177 (63%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D + GY ++ F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N + G+P+R+ + +D +KS VG N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKS-GVG-NVFIKNLDDSIDNKALYDTFSAFGNILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
K++ D + G SRG GF+ +++ EA+ AI+ MNG L +R++ V + +K+ + E
Sbjct: 129 -KVVCD-ENG-SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAE 182
Score = 213 (80.0 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 53/172 (30%), Positives = 94/172 (54%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +G+GFV F ++E A AI+ +N
Sbjct: 102 FIKNLDDSIDNKALYDTFSAFGNILSCKVVCDE--NGSRGHGFVHFETQEAATRAIQTMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V S+ ++ + GA N++I N D+D+ L + FS FG ++
Sbjct: 160 GMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D TG S+GFGF++++ E + A+ MNG+ + R + V A K+
Sbjct: 220 -VKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKR 269
Score = 208 (78.3 bits), Expect = 3.5e-15, P = 3.5e-15
Identities = 55/197 (27%), Positives = 99/197 (50%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
+ A + Y+ N + + L E+F + G ++V V D T +G+GFV F
Sbjct: 182 EFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDH-TGRSKGFGFVNFEK 240
Query: 76 EEDADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGN 118
E+A A+ +N ++ G+ + V +A Q++ S G NL++ N
Sbjct: 241 HEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKN 300
Query: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 178
LD +D++ L FS +G I T+ K+M + G+S+GFGF+ + S E + A+ MNG+
Sbjct: 301 LDDGIDDERLRKEFSPYGTI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 179 LCNRQITVSYAYKKDTK 195
+ + + V+ A +K+ +
Sbjct: 358 VSTKPLYVALAQRKEER 374
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 311 (114.5 bits), Expect = 5.8e-27, P = 5.8e-27
Identities = 64/187 (34%), Positives = 113/187 (60%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
+ + +++ Y G+LDP+VTE L++LF VV+V V +D+ GY ++ F + DA
Sbjct: 44 QTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDA 102
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
A++ LN L+ +PIR+ +++D + L N+FI NLD +D K L++TFS+FG I
Sbjct: 103 YRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTI 162
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
++ K+ D TG S+G+GF+ ++ E++ AAI+ +NG + ++Q+ V + ++ +
Sbjct: 163 LSC-KVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARD 220
Query: 199 HGTPAER 205
TP R
Sbjct: 221 ENTPTPR 227
Score = 239 (89.2 bits), Expect = 3.5e-19, P = 3.5e-19
Identities = 65/188 (34%), Positives = 99/188 (52%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L+E F G +++ V D VT +GYGFV+F EE A AI LN
Sbjct: 139 FIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 88 MIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ + K + R +A + N+++ NL ++ E L TF FGVI +
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI-S 256
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE--R 198
+ +MRD +GNSR FGF++++ EA+ +A+E MNG L + + V A KK + E R
Sbjct: 257 SAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELR 315
Query: 199 HGTPAERI 206
ERI
Sbjct: 316 RKFEQERI 323
Score = 216 (81.1 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 74/243 (30%), Positives = 117/243 (48%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YV NL ++ E+ L + F + G + + V +D+ N + +GFV F E A A++ +N
Sbjct: 232 YVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKMN 290
Query: 88 MIKLYGKPI----RVNKASQDKKSL--------------DVGANLFIGNLDPDVDEKLLY 129
I L G + R K S+ ++ L GANL++ NLD VD++ L
Sbjct: 291 GISL-GDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189
+ FS +G VT+ K+M +P G SRGFGF++Y + E + A+ MNG+ + + + ++ A
Sbjct: 350 EMFSEYGN-VTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 190 YKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPY 249
+K+ + H + A P S P GPP Q NG VP +P
Sbjct: 408 QRKEDR-RAHLQALFSQIRAPGPMSGFHHPPGGPMPGPPQHMYVGQ-NGA--SMVPSQPI 463
Query: 250 ANG 252
G
Sbjct: 464 GYG 466
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 311 (114.5 bits), Expect = 5.9e-27, P = 5.9e-27
Identities = 72/195 (36%), Positives = 111/195 (56%)
Query: 2 TTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRV 61
T PG+G G + YVG+LD VT+ L++ F + VV+V V +D
Sbjct: 24 TASATPGIGVGG-GGDGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAA 82
Query: 62 TNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLD 120
TN GYG+V + + +DA+ A++ LN L GK IR+ +S+D + G NLF+ NLD
Sbjct: 83 TNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLD 142
Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180
VD K L++ FS G IV+ K+ D G SRG+GF+ +D+ +++ AIE +NG+ L
Sbjct: 143 KSVDNKTLHEAFSGCGTIVSC-KVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLN 200
Query: 181 NRQITVSYAYKKDTK 195
++QI V +K+ +
Sbjct: 201 DKQIFVGPFLRKEER 215
Score = 212 (79.7 bits), Expect = 2.8e-16, P = 2.8e-16
Identities = 71/259 (27%), Positives = 120/259 (46%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
+ +A++ + YV NL T++ L F Q G + + V +D + +GFV F +
Sbjct: 216 ESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFEN 274
Query: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQ-DKKSLDV----------------GANLFIGN 118
EDA A++ LN K K V KA + ++ L++ G NL++ N
Sbjct: 275 PEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKN 334
Query: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 178
LD V ++ L + F+ FG I T+ K+MRDP +G S+G GF+++ + + + MNG+
Sbjct: 335 LDDTVTDEKLRELFAEFGTI-TSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKM 392
Query: 179 LCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANG 238
+ + + V+ A +K+ + + ++ A P P +F G P L Q
Sbjct: 393 VGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGVGPRMP--IFTGGAPGLG---QQIF 447
Query: 239 TVGGPVPPRPYANGAASGP 257
GP P P+ G P
Sbjct: 448 YGQGPPPIIPHQPGFGYQP 466
Score = 209 (78.6 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 60/183 (32%), Positives = 96/183 (52%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
SA R+ +V NLD V + L E F G +V+ V D + +GYGFV+F +E+
Sbjct: 127 SARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQ-SRGYGFVQFDTED 185
Query: 78 DADYAIKVLNMIKLYGKPIRVN---KASQDKKSLDVG--ANLFIGNLDPDVDEKLLYDTF 132
A AI+ LN L K I V + + + + D N+++ NL + L TF
Sbjct: 186 SAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTF 245
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
+G I ++ +MRD D G SR FGF+++++ E + A+EA+NG+ +++ V A KK
Sbjct: 246 GQYGSI-SSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKK 303
Query: 193 DTK 195
+
Sbjct: 304 SER 306
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 310 (114.2 bits), Expect = 6.2e-27, P = 6.2e-27
Identities = 69/167 (41%), Positives = 107/167 (64%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D T GY ++ F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N + G+PIR+ + +D +KS VG N+FI NL+ +D K LYDTFS FG I++
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKS-GVG-NIFIKNLEDSIDNKALYDTFSTFGNILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188
K++ D + G SRGFGF+ +++ EA+ AI MNG L +R++ V +
Sbjct: 129 -KVVCD-EHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGH 172
Score = 233 (87.1 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 56/172 (32%), Positives = 100/172 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL+ + + L++ F G +++ V D + +G+GFV F + E A AI +N
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGS--RGFGFVHFETHEAAQNAISTMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V S+ ++ +++GA N+++ NL DVDE+ L D FS FG +++
Sbjct: 160 GMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+MRD D+G+SRGFGF++++ E + A+ MNG+ + R + V A K+
Sbjct: 220 -VKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKR 269
Score = 225 (84.3 bits), Expect = 9.9e-18, P = 9.9e-18
Identities = 76/257 (29%), Positives = 124/257 (48%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YV NL V E+ L +LF Q G +++V V +D + +G+GFV F E+A A+ +N
Sbjct: 194 YVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDD-SGHSRGFGFVNFEKHEEAQKAVVNMN 252
Query: 88 MIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYD 130
++ G+ + V +A QD+ + G NL++ NLD +D++ L
Sbjct: 253 GREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS +GVI T+ K+M + G+S+GFGF+ + S E + A+ MNG+ + + + V+ A
Sbjct: 313 EFSPYGVI-TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 191 KKDTKG----ERHGTPAERILAANNP---SSQKSRPHTLFASGPPSLQNAPQANGTVGGP 243
+K+ + ++ + A P S Q+ + L A P Q AP G P
Sbjct: 370 RKEERKAILTNQYMQRLSTMRALGGPILGSFQQPASYFLPAVPQPPAQ-APYYGS--GPP 426
Query: 244 VPPRPYANGAASGPISA 260
+ P P P SA
Sbjct: 427 IQPAPRWTAQPPRPSSA 443
Score = 120 (47.3 bits), Expect = 0.00024, P = 0.00024
Identities = 24/80 (30%), Positives = 49/80 (61%)
Query: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
A+L++G+L PDV E +LY+ FS G I++ ++ RD T S G+ +I++ ++ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSI-RVCRDVATRRSLGYAYINFQQPADAERAL 69
Query: 172 EAMNGQYLCNRQITVSYAYK 191
+ MN + + + I + ++ +
Sbjct: 70 DTMNFEVIKGQPIRIMWSQR 89
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 78/224 (34%), Positives = 120/224 (53%)
Query: 26 TAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
+ YVGN+ QVTE LL E+F GPV + + KD+ YGFV + A AI
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDK-----SSYGFVHYFDRRSAALAIL 114
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 142
LN L+G+PI+VN A + D + N+F+G+L P+V + LY +FS F ++
Sbjct: 115 SLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSC-SDA 173
Query: 143 KIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE-RHGT 201
++M D TG SRGFGF+S+ + + + AI MNG++L +RQI ++A K T G+ + +
Sbjct: 174 RVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSS 233
Query: 202 PAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVP 245
+ ++ SS+ + TL P + N+ VG P
Sbjct: 234 DGKSVVELTTGSSEDGK-ETLNEETPEN--NSQFTTVYVGNLAP 274
Score = 113 (44.8 bits), Expect = 0.00085, P = 0.00085
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGV-IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172
+++GNL P+V + L+ F A G ++ ++ RD +GFGF+ Y++ + AI+
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD------KGFGFVRYNTHPEAALAIQ 320
Query: 173 AMNGQ-YLCNRQITVSYAYKKDTKG 196
N Q YL NRQI S+ K G
Sbjct: 321 MGNTQPYLFNRQIKCSWGNKPTPPG 345
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 68/188 (36%), Positives = 115/188 (61%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P+VTE +L+E F AGP++++ + +D++T GY +V ++ DA A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + G+P+R+ + +D G N+FI NL +D K LY+ FSAFG I++ K
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSC-K 120
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGERHGTP 202
+ D + G +G+GF+ + E+++ AI+AMNG +L R+I V + K+ + ER G
Sbjct: 121 VACD-EKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER-GAW 177
Query: 203 AERILAAN 210
A + +A+
Sbjct: 178 ARQSTSAD 185
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 68/188 (36%), Positives = 115/188 (61%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P+VTE +L+E F AGP++++ + +D++T GY +V ++ DA A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + G+P+R+ + +D G N+FI NL +D K LY+ FSAFG I++ K
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSC-K 120
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGERHGTP 202
+ D + G +G+GF+ + E+++ AI+AMNG +L R+I V + K+ + ER G
Sbjct: 121 VACD-EKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER-GAW 177
Query: 203 AERILAAN 210
A + +A+
Sbjct: 178 ARQSTSAD 185
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 308 (113.5 bits), Expect = 8.1e-27, P = 8.1e-27
Identities = 79/228 (34%), Positives = 123/228 (53%)
Query: 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADY 81
N A+ YVG+L+P V+E L+++F G V ++ V +D +T GY +V F E
Sbjct: 35 NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRK 94
Query: 82 AIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
AI+ LN + G+ R+ + +D G+ N+FI NL PD+D K LYDTFS FG I++
Sbjct: 95 AIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILS 154
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGERH 199
+ KI D + G S+GFGF+ ++ A+ AI+A+NG L ++I V+ + +K+ +
Sbjct: 155 S-KIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLE 212
Query: 200 GTPAE--RILAAN-NPSSQKSRPHTLFAS-GP-PSLQNAPQANGTVGG 242
T A + N N + + LFA GP S A+G + G
Sbjct: 213 ETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG 260
Score = 264 (98.0 bits), Expect = 5.1e-22, P = 5.1e-22
Identities = 78/245 (31%), Positives = 124/245 (50%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YV N++ + T+E ELF + GP+V+ + KD L +G+GFV + EDA A++ LN
Sbjct: 222 YVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEALN 280
Query: 88 MIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYD 130
+L G+ + V +A + + + V G NLF+ NLD VD++ L +
Sbjct: 281 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEE 340
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
F+ +G I T+ K+MR + G S+GFGF+ + + E + AI N Q + + + V+ A
Sbjct: 341 EFAPYGTI-TSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 191 KKDTKGERHGTPAERILAANNPSSQKSRPHTLFAS-GPPSLQNAPQANGTVGGPVPPR-- 247
+KD R A++I A N Q++ A+ G P P G + PPR
Sbjct: 399 RKDV---RRSQLAQQIQARNQMRYQQATAAAAAAAAGMPGQFMPPMFYGVM----PPRGV 451
Query: 248 PYANG 252
P+ NG
Sbjct: 452 PF-NG 455
Score = 199 (75.1 bits), Expect = 9.4e-14, P = 9.4e-14
Identities = 51/185 (27%), Positives = 94/185 (50%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S + ++ NL P + + L++ F G +++ + D +G+GFV F E
Sbjct: 119 SLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEG 177
Query: 78 DADYAIKVLNMIKLYGKPIRV----NKASQDKKSLDVGA---NLFIGNLDPDVDEKLLYD 130
A AI LN + L G+ I V ++ +D + + A NL++ N++ + ++ +
Sbjct: 178 AAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQE 237
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
F+ FG IV+ + +D D G +GFGF++Y+ E + A+EA+N L ++ V A
Sbjct: 238 LFAKFGPIVS-ASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQ 295
Query: 191 KKDTK 195
KK+ +
Sbjct: 296 KKNER 300
Score = 126 (49.4 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 29/100 (29%), Positives = 56/100 (56%)
Query: 102 SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY 161
S+ + + A+L++G+L+P V E LYD FS G V++ ++ RD T S G+ ++++
Sbjct: 28 SESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGS-VSSIRVCRDAITKTSLGYAYVNF 86
Query: 162 DSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGT 201
+ EA AIE +N + R + ++ ++D + G+
Sbjct: 87 NDHEAGRKAIEQLNYTPIKGRLCRIMWS-QRDPSLRKKGS 125
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 68/188 (36%), Positives = 115/188 (61%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P+VTE +L+E F AGP++++ + +D++T GY +V ++ DA A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + G+P+R+ + +D G N+FI NL +D K LY+ FSAFG I++ K
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSC-K 120
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGERHGTP 202
+ D + G +G+GF+ + E+++ AI+AMNG +L R+I V + K+ + ER G
Sbjct: 121 VACD-EKG-PKGYGFVHFQKQESAERAIDAMNGMFLNYRKIFVGRFKSHKEREAER-GAW 177
Query: 203 AERILAAN 210
A + +A+
Sbjct: 178 ARQSTSAD 185
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 68/175 (38%), Positives = 105/175 (60%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A YVG+LDP VTE++L++ F AGP+ + +D VT GYG+V FR DA++A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP R+ + D + G N+FI NLD +D + L+ FSAFG I++ K
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSC-K 136
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D D G S+G+ ++ +DS A++ AI MNG L NRQ+ V + + ++ E
Sbjct: 137 VVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE 189
Score = 188 (71.2 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 54/184 (29%), Positives = 96/184 (52%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V N + ++ L ELF + GP +V V +D + +G+GFV + + E A A+ L+
Sbjct: 202 FVKNFGDDMDDDKLKELFSEYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 88 MIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPDVDEKLLYD 130
+ GK + V +A + +KS G ++I NLD +D++ L +
Sbjct: 261 GKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETIDDEKLKE 320
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNR--QITVSY 188
FS+FG I + K+M + G +GFG I + SFE + A++ MNG+ + ++ Q+T+
Sbjct: 321 EFSSFGSI-SRAKVM--VEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Query: 189 AYKK 192
A ++
Sbjct: 378 ARRR 381
Score = 183 (69.5 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 49/173 (28%), Positives = 92/173 (53%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + L+ LF G +++ V D N +GY +V F S A+ AI +N
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGSILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 88 MIKLYGKPIRVNKAS-QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIV 139
++L + + V + ++++ +V N+F+ N D+D+ L + FS +G
Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGP-T 225
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
+ K++RD +G S+GFGF+ Y++ EA+ A+ ++G+ + + + V A KK
Sbjct: 226 ESVKVIRD-SSGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277
Score = 118 (46.6 bits), Expect = 0.00020, P = 0.00020
Identities = 33/102 (32%), Positives = 55/102 (53%)
Query: 93 GKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN 152
G+P N A + KK L A L++G+LDPDV E +LY F G + +I RDP T +
Sbjct: 4 GEP---NPAGKKKKYLK--AALYVGDLDPDVTEDMLYKKFRPAGPLRFT-RICRDPVTRS 57
Query: 153 SRGFGFISYDSFEA-SDAAIEAMNGQYLCNRQITVSYAYKKD 193
G+G++++ F A ++ A+ MN + + + ++ D
Sbjct: 58 PLGYGYVNF-RFPADAEWALNTMNFDLINGKPFRLMWSQPDD 98
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 67/188 (35%), Positives = 114/188 (60%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P+VTE +L+E F AGP++++ + +D++T GY +V ++ DA A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + G+P+R+ + +D G N+FI NL +D K LY+ FSAFG I++ K
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSC-K 120
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGERHGTP 202
+ D + G +G+GF+ + E+++ AI+ MNG +L R+I V + K+ + ER G
Sbjct: 121 VACD-EKG-PKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER-GAW 177
Query: 203 AERILAAN 210
A + +A+
Sbjct: 178 ARQSTSAD 185
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 68/175 (38%), Positives = 105/175 (60%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A YVG+LDP VTE++L++ F AGP+ + +D VT GYG+V FR DA++A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP R+ + D + G N+FI NLD +D + L+ FSAFG I++ K
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC-K 136
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D D G S+G+ ++ +DS A++ AI MNG L NRQ+ V + + ++ E
Sbjct: 137 VVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE 189
Score = 189 (71.6 bits), Expect = 7.8e-13, P = 7.8e-13
Identities = 52/185 (28%), Positives = 95/185 (51%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
+R +V N+ + +E L ELF + GP +V V +D + +G+GFV + + E A
Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAA 252
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPD 122
A+ L+ + GK + V +A + +KS G ++I NLD
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDET 312
Query: 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNR 182
++++ L + FS+FG I + K+M + G +GFG + + SFE + A++ MNG+ + ++
Sbjct: 313 INDEKLKEEFSSFGSI-SRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSK 369
Query: 183 QITVS 187
+ V+
Sbjct: 370 PLHVT 374
Score = 182 (69.1 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 48/173 (27%), Positives = 93/173 (53%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + L+ LF G +++ V D N +GY +V F S A+ AI +N
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 88 MIKLYGKPIRVNKAS-QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIV 139
++L + + V + ++++ +V N+F+ N+ D+D++ L + F +G
Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP-T 225
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
+ K++RD +G S+GFGF+ Y++ EA+ A+ ++G+ + + + V A KK
Sbjct: 226 ESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKK 277
Score = 118 (46.6 bits), Expect = 0.00020, P = 0.00020
Identities = 33/102 (32%), Positives = 55/102 (53%)
Query: 93 GKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN 152
G+P N A + KK L A L++G+LDPDV E +LY F G + +I RDP T +
Sbjct: 4 GEP---NPAGKKKKYLK--AALYVGDLDPDVTEDMLYKKFRPAGPLRFT-RICRDPVTRS 57
Query: 153 SRGFGFISYDSFEA-SDAAIEAMNGQYLCNRQITVSYAYKKD 193
G+G++++ F A ++ A+ MN + + + ++ D
Sbjct: 58 PLGYGYVNF-RFPADAEWALNTMNFDLINGKPFRLMWSQPDD 98
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 68/175 (38%), Positives = 105/175 (60%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A YVG+LDP VTE++L++ F AGP+ + +D VT GYG+V FR DA++A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP R+ + D + G N+FI NLD +D + L+ FSAFG I++ K
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSC-K 136
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
++ D D G S+G+ ++ +DS A++ AI MNG L NRQ+ V + + ++ E
Sbjct: 137 VVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE 189
Score = 183 (69.5 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 49/173 (28%), Positives = 93/173 (53%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + L+ LF G +++ V D N +GY +V F S A+ AI +N
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 88 MIKLYGKPIRVNKAS-QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIV 139
++L + + V + ++++ +V N+F+ N D+D++ L + FS +G
Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGP-T 225
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
+ K++RD +G S+GFGF+ Y++ EA+ A+ ++G+ + + + V A KK
Sbjct: 226 ESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKK 277
Score = 180 (68.4 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 52/185 (28%), Positives = 93/185 (50%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
+R +V N + +E L E+F GP +V V +D + +G+GFV + + E A
Sbjct: 194 DRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRD-ASGKSKGFGFVRYETHEAA 252
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPD 122
A+ L+ + GK + V +A + +KS G ++I NLD
Sbjct: 253 QKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDET 312
Query: 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNR 182
+D++ L + FS+FG I + K+M + G +GFG + + SFE + A++ MNG+ + ++
Sbjct: 313 IDDEKLKEEFSSFGSI-SRAKVM--VEVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSK 369
Query: 183 QITVS 187
+ V+
Sbjct: 370 PLHVT 374
Score = 118 (46.6 bits), Expect = 0.00020, P = 0.00020
Identities = 33/102 (32%), Positives = 55/102 (53%)
Query: 93 GKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN 152
G+P N A + KK L A L++G+LDPDV E +LY F G + +I RDP T +
Sbjct: 4 GEP---NPAGKKKKYLK--AALYVGDLDPDVTEDMLYKKFRPAGPLRFT-RICRDPVTRS 57
Query: 153 SRGFGFISYDSFEA-SDAAIEAMNGQYLCNRQITVSYAYKKD 193
G+G++++ F A ++ A+ MN + + + ++ D
Sbjct: 58 PLGYGYVNF-RFPADAEWALNTMNFDLINGKPFRLMWSQPDD 98
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 67/188 (35%), Positives = 115/188 (61%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P+VTE +L+E F AGP++++ + +D+VT GY +V ++ DA A++
Sbjct: 2 ASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALE 61
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + G+P+R+ + +D G N+FI NL +D K LY+ FSAFG I++ K
Sbjct: 62 TMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSC-K 120
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGERHGTP 202
+ D + G +G+GF+ + E+++ AI+A+NG +L R+I V + K+ + ER G
Sbjct: 121 VACD-EKG-PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFVGRFKSHKEREAER-GAW 177
Query: 203 AERILAAN 210
A + +A+
Sbjct: 178 ARQSTSAD 185
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 304 (112.1 bits), Expect = 2.8e-26, P = 2.8e-26
Identities = 68/177 (38%), Positives = 114/177 (64%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L VTE +L++ F AG ++++ V +D +T GY ++ F+ DA+ A+
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N + G+PIR+ + +D +KS VG N+FI N+D +D K LYDTFSAFG I++
Sbjct: 71 TMNYEVIKGRPIRIMWSQRDPGLRKS-GVG-NIFIKNMDESIDNKALYDTFSAFGNILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
K++ D + G S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 129 -KVVCD-ENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAE 182
Score = 199 (75.1 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 53/178 (29%), Positives = 98/178 (55%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ N+D + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNMDESIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAANRAIETMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V S+ ++ ++GA N++I N D+D + L + F+ FG ++
Sbjct: 160 GMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGE 197
+M D + G SRGFGF+++ + + A+ MNG+ L R + V A K+ + +GE
Sbjct: 220 -VCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGE 275
Score = 199 (75.1 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 54/185 (29%), Positives = 94/185 (50%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Y+ N + E L +F + G ++V V D +G+GFV F + DA A+ +N
Sbjct: 194 YIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDE-RGRSRGFGFVNFVNHGDARRAVTEMN 252
Query: 88 MIKLYGKPIRVNKASQD-------KKSLDV----------GANLFIGNLDPDVDEKLLYD 130
+L G+ + V +A + K+ + G NL++ NLD +D++ L
Sbjct: 253 GKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKLRK 312
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
F+ +G I T+ K+M D G+SRGFGF+ + S E + A+ MNG+ + + + V+ A
Sbjct: 313 EFAPYGTI-TSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQ 369
Query: 191 KKDTK 195
+K+ +
Sbjct: 370 RKEER 374
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 71/177 (40%), Positives = 108/177 (61%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A YVG+LDP VTE++L++ F AGP+ + +D VT GYG+V FR DA++A+
Sbjct: 18 AALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALN 77
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N + GKP R+ + D +KS VG N+FI NLD +D + L+ FSAFG I++
Sbjct: 78 TMNFDLINGKPFRLMWSQPDDHLRKS-GVG-NIFIKNLDKSIDNRALFYLFSAFGNILSC 135
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
K++ D D G S+G+ ++ +DS A++ AI MNG L NRQ+ V + + ++ E
Sbjct: 136 -KVVCD-DNG-SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAE 189
Score = 188 (71.2 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 50/173 (28%), Positives = 92/173 (53%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + L+ LF G +++ V D N +GY +V F S A+ AI +N
Sbjct: 109 FIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMN 166
Query: 88 MIKLYGKPIRVNKAS-QDKKSLDVGA-------NLFIGNLDPDVDEKLLYDTFSAFGVIV 139
++L + + V + ++++ +V N+F+ N D+D++ L FS +G
Sbjct: 167 GVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGP-T 225
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
+ K++RD TG S+GFGF+ Y++ EA+ A+ ++G+ + + + V A KK
Sbjct: 226 ESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKK 277
Score = 178 (67.7 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 51/185 (27%), Positives = 91/185 (49%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
+R +V N + +E L +LF + GP +V V +D T +G+GFV + + E A
Sbjct: 194 DRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRD-ATGKSKGFGFVRYETHEAA 252
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQD-----------------KKSLDVGANLFIGNLDPD 122
A+ L+ + GK + V +A + K+ G ++I NLD
Sbjct: 253 QKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDET 312
Query: 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNR 182
++++ L + FS FG I + K+M + G +GFG + + SFE + A+ MNG+ + ++
Sbjct: 313 INDEKLKEEFSLFGSI-SRAKVMME--VGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSK 369
Query: 183 QITVS 187
+ V+
Sbjct: 370 TLHVT 374
Score = 118 (46.6 bits), Expect = 0.00020, P = 0.00020
Identities = 33/102 (32%), Positives = 55/102 (53%)
Query: 93 GKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN 152
G+P N A + KK L A L++G+LDPDV E +LY F G + +I RDP T +
Sbjct: 4 GEP---NTAGKKKKYLK--AALYVGDLDPDVTEDMLYKKFRPAGPLRFT-RICRDPVTRS 57
Query: 153 SRGFGFISYDSFEA-SDAAIEAMNGQYLCNRQITVSYAYKKD 193
G+G++++ F A ++ A+ MN + + + ++ D
Sbjct: 58 PLGYGYVNF-RFPADAEWALNTMNFDLINGKPFRLMWSQPDD 98
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 304 (112.1 bits), Expect = 4.3e-26, P = 4.3e-26
Identities = 71/194 (36%), Positives = 113/194 (58%)
Query: 6 APGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLH 65
AP V A + + + A+ YVG LDP VTE +L+ELF G V ++ V +D VT
Sbjct: 24 APEVTA-VEAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRS 82
Query: 66 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVD 124
GY +V + + A+ LN + GKP R+ + +D G N+FI NLD +D
Sbjct: 83 LGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAID 142
Query: 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQI 184
K L+DTF+AFG I++ K+ +D + G S+G+GF+ Y++ EA++ AI+ +NG L ++++
Sbjct: 143 NKALHDTFAAFGNILSC-KVAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 200
Query: 185 TVSYAY-KKDTKGE 197
V + KKD + +
Sbjct: 201 FVGHHISKKDRQSK 214
Score = 230 (86.0 bits), Expect = 3.9e-18, P = 3.9e-18
Identities = 55/177 (31%), Positives = 101/177 (57%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L + F G +++ V +D + +GYGFV + + E A+ AIK +N
Sbjct: 133 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVN 191
Query: 88 MIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L K + ++K + K ++ AN ++I N+DP+V+++ F FG I T
Sbjct: 192 GMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEI-T 250
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
+ + RD + G SRGFGF+++ + E++ AA+E MN + + ++++ V A KK + E
Sbjct: 251 SATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREE 306
Score = 108 (43.1 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 39/136 (28%), Positives = 65/136 (47%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQ-GY-GFVEFRSEEDA--DYAI 83
Y+ N+DP+V +E +LF + G + + + +D G+ F S + A +
Sbjct: 226 YIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMND 285
Query: 84 KVLNMIKLY-GKPIRVNK-----------ASQDKKSLDVGANLFIGNLDPDVDEKLLYDT 131
K + KLY G+ + ++ A +K S G NL++ NL DVD+ L +
Sbjct: 286 KEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLREL 345
Query: 132 FSAFGVIVTNPKIMRD 147
F +G I T+ K+MRD
Sbjct: 346 FGPYGTI-TSAKVMRD 360
Score = 90 (36.7 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 29/105 (27%), Positives = 48/105 (45%)
Query: 151 GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAAN 210
G S+GFGF+ + S + + A+ MN + + + + V+ A +KD + R A I A N
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR--RSQLEAS-IQARN 470
Query: 211 NPSSQKSRPHTLFASG--PPSLQNAPQANGTV-----GGPVPPRP 248
N Q++ P++ P G + GG PP+P
Sbjct: 471 NIRQQQAAAAAGMGQAYMAPAVFYGPGQQGFIPGAQRGGMFPPQP 515
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 70/188 (37%), Positives = 109/188 (57%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + + A+ YVG+L VTE+LL+ F GPV+++ + +D+VT GY +V F D
Sbjct: 62 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 121
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGV 137
A A+ +N + GK IR+ + +D G N+FI NLD +D K LY+ FSAFG
Sbjct: 122 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 181
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKG 196
I+++ K+M D D G S+G+ F+ + + A+D AIE MNG+ L ++ V + +KD +
Sbjct: 182 ILSS-KVMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREA 238
Query: 197 ERHGTPAE 204
E +E
Sbjct: 239 ELRSKASE 246
Score = 222 (83.2 bits), Expect = 8.4e-18, P = 8.4e-18
Identities = 67/202 (33%), Positives = 107/202 (52%)
Query: 1 MTTRIAPGVGANLL-GQHSA--ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVP 57
M I G L+ Q A R+ ++ NLD + + L+E F G +++ V
Sbjct: 129 MNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 188
Query: 58 KDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN--KASQDKKS-LDVGA-- 112
D + +GY FV F+++ AD AI+ +N L G + V K +D+++ L A
Sbjct: 189 SDDQGS--KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 246
Query: 113 --NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
N++I N D+D++ L D FS +G ++ K+M D +G S+GFGF+S+DS EA+ A
Sbjct: 247 FTNVYIKNFGGDMDDERLKDVFSKYGKTLS-VKVMTD-SSGKSKGFGFVSFDSHEAAKKA 304
Query: 171 IEAMNGQYLCNRQITVSYAYKK 192
+E MNG+ + + I V A KK
Sbjct: 305 VEEMNGRDINGQLIFVGRAQKK 326
Score = 177 (67.4 bits), Expect = 3.4e-11, P = 3.4e-11
Identities = 52/190 (27%), Positives = 100/190 (52%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
++ ++ Y+ N + +E L ++F + G ++V V D + +G+GFV F S E
Sbjct: 242 SKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEA 300
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQD-KKSLDV----------------GANLFIGNLDP 121
A A++ +N + G+ I V +A + ++ ++ G L+I NLD
Sbjct: 301 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 360
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L + FS+FG I + K+M++ G S+GFG I + S E + A+ MNG+ L +
Sbjct: 361 TIDDEKLRNEFSSFGSI-SRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGS 417
Query: 182 RQITVSYAYK 191
+ ++++ A +
Sbjct: 418 KPLSIALAQR 427
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 70/188 (37%), Positives = 109/188 (57%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + + A+ YVG+L VTE+LL+ F GPV+++ + +D+VT GY +V F D
Sbjct: 4 AAKYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLAD 63
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGV 137
A A+ +N + GK IR+ + +D G N+FI NLD +D K LY+ FSAFG
Sbjct: 64 AQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK 123
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKG 196
I+++ K+M D D G S+G+ F+ + + A+D AIE MNG+ L ++ V + +KD +
Sbjct: 124 ILSS-KVMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREA 180
Query: 197 ERHGTPAE 204
E +E
Sbjct: 181 ELRSKASE 188
Score = 222 (83.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 67/202 (33%), Positives = 107/202 (52%)
Query: 1 MTTRIAPGVGANLL-GQHSA--ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVP 57
M I G L+ Q A R+ ++ NLD + + L+E F G +++ V
Sbjct: 71 MNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVM 130
Query: 58 KDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN--KASQDKKS-LDVGA-- 112
D + +GY FV F+++ AD AI+ +N L G + V K +D+++ L A
Sbjct: 131 SDDQGS--KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE 188
Query: 113 --NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
N++I N D+D++ L D FS +G ++ K+M D +G S+GFGF+S+DS EA+ A
Sbjct: 189 FTNVYIKNFGGDMDDERLKDVFSKYGKTLS-VKVMTD-SSGKSKGFGFVSFDSHEAAKKA 246
Query: 171 IEAMNGQYLCNRQITVSYAYKK 192
+E MNG+ + + I V A KK
Sbjct: 247 VEEMNGRDINGQLIFVGRAQKK 268
Score = 177 (67.4 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 52/190 (27%), Positives = 100/190 (52%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
++ ++ Y+ N + +E L ++F + G ++V V D + +G+GFV F S E
Sbjct: 184 SKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEA 242
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQD-KKSLDV----------------GANLFIGNLDP 121
A A++ +N + G+ I V +A + ++ ++ G L+I NLD
Sbjct: 243 AKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDD 302
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L + FS+FG I + K+M++ G S+GFG I + S E + A+ MNG+ L +
Sbjct: 303 TIDDEKLRNEFSSFGSI-SRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGS 359
Query: 182 RQITVSYAYK 191
+ ++++ A +
Sbjct: 360 KPLSIALAQR 369
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 300 (110.7 bits), Expect = 7.2e-26, P = 7.2e-26
Identities = 65/174 (37%), Positives = 107/174 (61%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
++ YVG+L P VTE +L+E+F G ++++ V +D T GY ++ F+ DA+ A+
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + G+PIR+ + +D G N+FI NL+ +D K LYDTFS FG I+++ K
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSS-K 129
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
++ + + G SRGFGF+ +++ EA+ AI MNG L +R++ V + +K K E
Sbjct: 130 VVYN-EHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGH-FKSRQKRE 180
Score = 221 (82.9 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 57/174 (32%), Positives = 97/174 (55%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLH--QGYGFVEFRSEEDADYAIKV 85
++ NL+ + + L++ F G +++ V V N H +G+GFV F + E A AI
Sbjct: 102 FIKNLENSIDNKALYDTFSTFGSILSSKV----VYNEHGSRGFGFVHFETHEAAQKAINT 157
Query: 86 LNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVI 138
+N + L + + V S+ K+ ++GA N+++ NL D+DE+ L D FS FG
Sbjct: 158 MNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGK- 216
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
+ K+MRD + G SRGFGFI+++ E + A++ MNG+ + + + V A K+
Sbjct: 217 TQSVKVMRDSN-GQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKR 269
Score = 215 (80.7 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 68/250 (27%), Positives = 123/250 (49%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YV NL + E+ L +LF Q G +V V +D +G+GF+ F E+A A+ +N
Sbjct: 194 YVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS-NGQSRGFGFINFEKHEEAQKAVDHMN 252
Query: 88 MIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYD 130
++ G+ + V +A Q++++ G NL++ NLD +++ L +
Sbjct: 253 GKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRLKE 312
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS +GVI T+ K+M + + +S+GFGF+ + S E + A+ MNG+ + + + V+ A
Sbjct: 313 VFSTYGVI-TSAKVMTE--SSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 191 KKDTKGERHGTPAERILAANNPSS-QKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPY 249
+K+ + R L+ + SS Q+ + L A + Q ++ ++ P+ P P
Sbjct: 370 RKEERKAILTNQYRRRLSRSVLSSFQQPTSYLLPAVHQSTTQTMYYSSASIA-PMQPDPR 428
Query: 250 ANGAASGPIS 259
GP S
Sbjct: 429 WTAQPHGPSS 438
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 264 (98.0 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 70/214 (32%), Positives = 112/214 (52%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
E T YVGNL VTE L+ +LF Q GP N + D N Y FVEF A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHA 59
Query: 80 DYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
A+ +N K+ GK ++VN A S KK ++F+G+L P++ + + F+ FG
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFG 119
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 196
I ++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI ++A +K
Sbjct: 120 RI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAP 178
Query: 197 ERHGTPAERILAANNPSSQKSRPH-TLFASGPPS 229
+ + L+ + SQ S + T++ G S
Sbjct: 179 KSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTS 212
Score = 151 (58.2 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 51/170 (30%), Positives = 83/170 (48%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+VG+L P++T E + F G + + V KD T +GYGFV F ++ DA+ AI+ +
Sbjct: 98 FVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 157
Query: 88 MIKLYGKPIRVNKASQ-----------DKKSLDV----------GANLFIGNLDPDVDEK 126
L G+ IR N A++ + K L ++ G + + E+
Sbjct: 158 GQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQ 217
Query: 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176
L+ TFS FG I+ +I PD +G+ FI + S E++ AI ++NG
Sbjct: 218 LMRQTFSPFGQIM---EIRVFPD----KGYSFIRFSSHESAAHAIVSVNG 260
Score = 37 (18.1 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 280 GQ-AAWQGQPQHIGQGV 295
GQ W G Q IGQ V
Sbjct: 296 GQWGQWYGNAQQIGQYV 312
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 73/224 (32%), Positives = 120/224 (53%)
Query: 26 TAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
+ YVGN+ QVTE LL E+F GPV + + K++ YGFV + A AI
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEK-----SSYGFVHYFDRRSAGLAIL 109
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 142
LN L+G+PI+VN A + D + N+F+G+L P+V + +L+ FS + ++
Sbjct: 110 SLNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTC-SDA 168
Query: 143 KIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE-RHGT 201
++M D TG SRGFGF+S+ + + + AI+ + G++L +RQI ++A K T GE + +
Sbjct: 169 RVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSS 228
Query: 202 PAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVP 245
++ ++ + S+ + T +G NA VG P
Sbjct: 229 DSKSVVELTSGVSEDGKDTT---NGEAPENNAQYTTVYVGNLAP 269
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 285 (105.4 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 66/191 (34%), Positives = 106/191 (55%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L+ VTE +L+E+F G V ++ V +D VT GY +V + + DA+ A+
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + G+P R+ + +D G N+F+ NLD +D K L+DTFS FG I++ K
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSC-K 134
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPA 203
+ D + G S+ +GF+ Y+ E++ AIE +NG L ++ + V KK + + T
Sbjct: 135 VATD-EFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERAT-NDTKF 192
Query: 204 ERILAANNPSS 214
+ N P S
Sbjct: 193 TNLYVKNFPDS 203
Score = 165 (63.1 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 54/193 (27%), Positives = 92/193 (47%)
Query: 8 GVGANLLGQH---SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNL 64
G A L+ H S ++ +V NLD + + L++ F G +++ V D
Sbjct: 84 GQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGK- 142
Query: 65 HQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN---KASQDKKSLDVGANLFIGNLDP 121
+ YGFV + EE A AI+ +N ++L K + V K S+ + NL++ N
Sbjct: 143 SKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPD 202
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
V E L F+ +G I T+ + D +R F FI+Y E++ A++ +NG+ + +
Sbjct: 203 SVTETHLRQLFNPYGEI-TSMIVKMD---NKNRKFCFINYADAESAKNAMDNLNGKKITD 258
Query: 182 R-QITVSYAYKKD 193
QI +Y KK+
Sbjct: 259 DGQIDETYDPKKE 271
Score = 144 (55.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 32/95 (33%), Positives = 56/95 (58%)
Query: 104 DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDS 163
+ K+ G NL+I NLD +D+ +L + F FG I T+ K+MRD + S+GFGF+ + S
Sbjct: 442 ENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTI-TSAKVMRD-EKEQSKGFGFVCFAS 499
Query: 164 FEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
E ++ A+ M+ + + + + V A K++ + R
Sbjct: 500 QEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSR 534
Score = 121 (47.7 bits), Expect = 0.00029, P = 0.00029
Identities = 28/95 (29%), Positives = 52/95 (54%)
Query: 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEF 73
L + ++Q Y+ NLD + + +L ELF G + + V +D +G+GFV F
Sbjct: 439 LNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQ-SKGFGFVCF 497
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSL 108
S+E+A+ A+ +++ + GKP+ V A + ++ L
Sbjct: 498 ASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRL 532
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 285 (105.4 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 66/191 (34%), Positives = 106/191 (55%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L+ VTE +L+E+F G V ++ V +D VT GY +V + + DA+ A+
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + G+P R+ + +D G N+F+ NLD +D K L+DTFS FG I++ K
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSC-K 134
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPA 203
+ D + G S+ +GF+ Y+ E++ AIE +NG L ++ + V KK + + T
Sbjct: 135 VATD-EFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERAT-NDTKF 192
Query: 204 ERILAANNPSS 214
+ N P S
Sbjct: 193 TNLYVKNFPDS 203
Score = 165 (63.1 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 54/193 (27%), Positives = 92/193 (47%)
Query: 8 GVGANLLGQH---SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNL 64
G A L+ H S ++ +V NLD + + L++ F G +++ V D
Sbjct: 84 GQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGK- 142
Query: 65 HQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN---KASQDKKSLDVGANLFIGNLDP 121
+ YGFV + EE A AI+ +N ++L K + V K S+ + NL++ N
Sbjct: 143 SKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPD 202
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
V E L F+ +G I T+ + D +R F FI+Y E++ A++ +NG+ + +
Sbjct: 203 SVTETHLRQLFNPYGEI-TSMIVKMD---NKNRKFCFINYADAESAKNAMDNLNGKKITD 258
Query: 182 R-QITVSYAYKKD 193
QI +Y KK+
Sbjct: 259 DGQIDETYDPKKE 271
Score = 144 (55.7 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 32/95 (33%), Positives = 56/95 (58%)
Query: 104 DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDS 163
+ K+ G NL+I NLD +D+ +L + F FG I T+ K+MRD + S+GFGF+ + S
Sbjct: 442 ENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTI-TSAKVMRD-EKEQSKGFGFVCFAS 499
Query: 164 FEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
E ++ A+ M+ + + + + V A K++ + R
Sbjct: 500 QEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSR 534
Score = 121 (47.7 bits), Expect = 0.00029, P = 0.00029
Identities = 28/95 (29%), Positives = 52/95 (54%)
Query: 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEF 73
L + ++Q Y+ NLD + + +L ELF G + + V +D +G+GFV F
Sbjct: 439 LNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKEQ-SKGFGFVCF 497
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSL 108
S+E+A+ A+ +++ + GKP+ V A + ++ L
Sbjct: 498 ASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRL 532
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 274 (101.5 bits), Expect = 2.1e-23, P = 2.1e-23
Identities = 65/193 (33%), Positives = 115/193 (59%)
Query: 5 IAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNL 64
++P + + + E N+ A YVG LDP+VTE++L ++F G V++V + D+ N
Sbjct: 71 VSPTSAGGYVRRAAPEPNKRAL-YVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNS 129
Query: 65 H-QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ----DKKSLDVGANLFIGNL 119
YGFVEF A+ A++ LN +++ IRVN A Q +K+ ++F+G+L
Sbjct: 130 KGANYGFVEFDDPGAAERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDL 189
Query: 120 DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 179
+V++++L FSAFG V+ ++M D TG SRG+GF+++ ++ A+ +M+G++L
Sbjct: 190 SNEVNDEVLLQAFSAFGS-VSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWL 248
Query: 180 CNRQITVSYAYKK 192
+R I ++A +K
Sbjct: 249 GSRAIRCNWANQK 261
Score = 129 (50.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 28/83 (33%), Positives = 52/83 (62%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRG--FGFISYDSFEASDAAI 171
L++G LDP V E +L F G +++ KI+ D + NS+G +GF+ +D A++ A+
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVIS-VKIIPDKNF-NSKGANYGFVEFDDPGAAERAM 149
Query: 172 EAMNGQYLCNRQITVSYAYKKDT 194
+ +NG+ + +I V++AY+ +T
Sbjct: 150 QTLNGRRIHQSEIRVNWAYQSNT 172
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 71/211 (33%), Positives = 113/211 (53%)
Query: 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYA 82
Q T YVGNL VTE L+ +LF Q GP + + + +N Y FVEF DA A
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAA 64
Query: 83 IKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
+ +N K+ GK ++VN A S KK ++F+G+L P++ + + F+ FG I
Sbjct: 65 LAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI- 123
Query: 140 TNPKIMRDPDTGNSRGFGFIS-YDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDT---K 195
++ ++++D TG S+G+GF+S Y+ +A +A + M GQ+L RQI ++A +K
Sbjct: 124 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQIRTNWATRKPPAPKS 182
Query: 196 GERHGTPAERILAANNPSSQKSRPHTLFASG 226
+ + T R N SS K+ T++ G
Sbjct: 183 TQENNTKQLRFEDVVNQSSPKNC--TVYCGG 211
Score = 147 (56.8 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 50/170 (29%), Positives = 85/170 (50%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+VG+L P++T E + F G + + V KD T +GYGFV F ++ DA+ AI +
Sbjct: 100 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 159
Query: 88 MIKLYGKPIRVN---------KASQDK--KSL---DV-------GANLFIGNLDPDVDEK 126
L G+ IR N K++Q+ K L DV ++ G + + ++
Sbjct: 160 GQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 219
Query: 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176
L+ TFS FG I+ +I P+ +G+ F+ + + E++ AI ++NG
Sbjct: 220 LMRQTFSPFGQIM---EIRVFPE----KGYSFVRFSTHESAAHAIVSVNG 262
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 71/211 (33%), Positives = 113/211 (53%)
Query: 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYA 82
Q T YVGNL VTE L+ +LF Q GP + + + +N Y FVEF DA A
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSN--DPYCFVEFYEHRDAAAA 64
Query: 83 IKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
+ +N K+ GK ++VN A S KK ++F+G+L P++ + + F+ FG I
Sbjct: 65 LAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI- 123
Query: 140 TNPKIMRDPDTGNSRGFGFIS-YDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDT---K 195
++ ++++D TG S+G+GF+S Y+ +A +A + M GQ+L RQI ++A +K
Sbjct: 124 SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQIRTNWATRKPPAPKS 182
Query: 196 GERHGTPAERILAANNPSSQKSRPHTLFASG 226
+ + T R N SS K+ T++ G
Sbjct: 183 TQENNTKQLRFEDVVNQSSPKNC--TVYCGG 211
Score = 147 (56.8 bits), Expect = 8.9e-08, P = 8.9e-08
Identities = 50/170 (29%), Positives = 85/170 (50%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+VG+L P++T E + F G + + V KD T +GYGFV F ++ DA+ AI +
Sbjct: 100 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 159
Query: 88 MIKLYGKPIRVN---------KASQDK--KSL---DV-------GANLFIGNLDPDVDEK 126
L G+ IR N K++Q+ K L DV ++ G + + ++
Sbjct: 160 GQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 219
Query: 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176
L+ TFS FG I+ +I P+ +G+ F+ + + E++ AI ++NG
Sbjct: 220 LMRQTFSPFGQIM---EIRVFPE----KGYSFVRFSTHESAAHAIVSVNG 262
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 69/205 (33%), Positives = 113/205 (55%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
+ +Q T YVGNL VTE L+ ++F Q GP + + D N Y FVEF A
Sbjct: 4 DEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGN--DPYCFVEFYENRHA 61
Query: 80 DYAIKVLNMIKLYGKPIRVNKAS---QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
A+ +N K+ GK ++VN AS KK ++F+G+L P++ + F+ FG
Sbjct: 62 AAALAAMNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFG 121
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDT-- 194
I ++ ++++D TG S+G+GFIS+ + +++AI+ MNGQ+L RQI ++A +K +
Sbjct: 122 KI-SDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAP 180
Query: 195 KGERHGTPA-----ERILAANNPSS 214
K G + E +L ++PS+
Sbjct: 181 KSNNEGASSKHLSYEEVLNQSSPSN 205
Score = 133 (51.9 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 50/186 (26%), Positives = 91/186 (48%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+VG+L P+++ + + F G + + V KD T +GYGF+ F ++ DA+ AI+ +N
Sbjct: 100 FVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMN 159
Query: 88 MIKLYGKPIRVNKASQDK---KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVT--NP 142
L G+ IR N A++ KS + GA+ + + +++ + G I + +
Sbjct: 160 GQWLGGRQIRTNWATRKPSAPKSNNEGASSKHLSYEEVLNQSSPSNCTVYCGGIASGLSD 219
Query: 143 KIMRDPDT--GN--------SRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
++MR + G +G+ F+ +DS E + AI ++NG C TV + K
Sbjct: 220 QLMRQTFSPFGQIMEIRVFPEKGYSFVRFDSHEGAAHAIVSVNGT--CIEGHTVKCYWGK 277
Query: 193 DTKGER 198
+T R
Sbjct: 278 ETADMR 283
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 268 (99.4 bits), Expect = 3.9e-23, P = 3.9e-23
Identities = 72/203 (35%), Positives = 109/203 (53%)
Query: 1 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDR 60
M +++A G +L G S E T YVGNLD VTE+ + LF Q G V V D
Sbjct: 26 MHSKLAEREGFHL-GNGSDEPR---TLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD- 80
Query: 61 VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGAN--LF 115
+ Y FVEF A A++ +N L + ++VN A Q + +D + +F
Sbjct: 81 --GSNDPYAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVF 138
Query: 116 IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175
+G+L +VD + L + F FG V++ K++RD +T S+G+GF+SY E ++ AIE MN
Sbjct: 139 VGDLSSEVDNQKLREAFQPFGD-VSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMN 197
Query: 176 GQYLCNRQITVSYAYKKDTKGER 198
GQ+L R I ++A +K E+
Sbjct: 198 GQWLGRRTIRTNWATRKPGDQEK 220
Score = 166 (63.5 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 69/243 (28%), Positives = 113/243 (46%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+VG+L +V + L E F G V + V +D T +GYGFV + E+A+ AI+ +N
Sbjct: 138 FVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMN 197
Query: 88 MIKLYGKPIRVNKAS-----QDK------KSLDV------GAN--LFIGNLDPDVDEKLL 128
L + IR N A+ Q+K KS D G N +++GN+ + E +
Sbjct: 198 GQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNI-ASLTEDEI 256
Query: 129 YDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188
F++FG I T +I + +G+ F+ +D+ +A+ AI MN Q + + + S+
Sbjct: 257 RQGFASFGRI-TEVRIFK------MQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSW 309
Query: 189 AYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRP 248
DT G+ G + N+ S S+P++ + G Q G GGP +
Sbjct: 310 GKTGDT-GKTPGG-SYGYGYGNSSSGGNSQPYSGYGGG--GAYGGGQGGGGHGGPGQQQS 365
Query: 249 YAN 251
AN
Sbjct: 366 NAN 368
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 63/176 (35%), Positives = 98/176 (55%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
E T YVGNL VTE L+ +LF Q GP N + D N Y FVEF A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHA 59
Query: 80 DYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
A+ +N K+ GK ++VN A S KK ++F+G+L P++ + + F+ FG
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFG 119
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
I ++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI ++A +K
Sbjct: 120 RI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 69/208 (33%), Positives = 111/208 (53%)
Query: 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKV 85
T YVGNL VTE L+ +LF Q GP N + D N Y FVEF A A+
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAA 61
Query: 86 LNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 142
+N K+ GK ++VN A S KK ++F+G+L P++ + + F+ FG I ++
Sbjct: 62 MNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDA 120
Query: 143 KIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTP 202
++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI ++A +K +
Sbjct: 121 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYES 180
Query: 203 AERILAANNPSSQKSRPH-TLFASGPPS 229
+ L+ + SQ S + T++ G S
Sbjct: 181 NTKQLSYDEVVSQSSPGNCTVYCGGVTS 208
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 63/176 (35%), Positives = 98/176 (55%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
E T YVGNL VTE L+ +LF Q GP N + D N Y FVEF A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFYEHRHA 59
Query: 80 DYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
A+ +N K+ GK ++VN A S KK ++F+G+L P++ + + F+ FG
Sbjct: 60 ASALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFG 119
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
I ++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI ++A +K
Sbjct: 120 RI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 174
Score = 155 (59.6 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 52/170 (30%), Positives = 86/170 (50%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+VG+L P++T E + F G + + V KD T +GYGFV F ++ DA+ AI+ +
Sbjct: 98 FVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 157
Query: 88 MIKLYGKPIRVNKASQ-----------DKKSL---DV-------GANLFIGNLDPDVDEK 126
L G+ IR N A++ + K L DV ++ G + + E+
Sbjct: 158 GQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQ 217
Query: 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176
L+ TFS FG I+ +I PD +G+ F+ ++S E++ AI ++NG
Sbjct: 218 LMRQTFSPFGQIM---EIRVFPD----KGYSFVRFNSHESAAHAIVSVNG 260
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 240 (89.5 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 70/225 (31%), Positives = 112/225 (49%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
E T YVGNL VTE L+ +LF Q GP N + D N Y FVEF A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHA 59
Query: 80 DYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDE 125
A+ +N K+ GK ++VN A S KK ++F+G+L P++
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185
+ + F+ FG I ++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI
Sbjct: 120 EDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 186 VSYAYKKDTKGERHGTPAERILAANNPSSQKSRPH-TLFASGPPS 229
++A +K + + L+ + SQ S + T++ G S
Sbjct: 179 TNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTS 223
Score = 160 (61.4 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 54/181 (29%), Positives = 89/181 (49%)
Query: 18 SAERNQDAT-AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S +R+QD +VG+L P++T E + F G + + V KD T +GYGFV F ++
Sbjct: 98 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKASQ-----------DKKSLDV----------GANLF 115
DA+ AI+ + L G+ IR N A++ + K L ++
Sbjct: 158 WDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVY 217
Query: 116 IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175
G + + E+L+ TFS FG I+ +I PD +G+ F+ + S E++ AI ++N
Sbjct: 218 CGGVTSGLTEQLMRQTFSPFGQIM---EIRVFPD----KGYSFVRFSSHESAAHAIVSVN 270
Query: 176 G 176
G
Sbjct: 271 G 271
Score = 37 (18.1 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 280 GQ-AAWQGQPQHIGQGV 295
GQ W G Q IGQ V
Sbjct: 307 GQWGQWYGNAQQIGQYV 323
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 239 (89.2 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 69/219 (31%), Positives = 111/219 (50%)
Query: 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKV 85
T YVGNL VTE L+ +LF Q GP N + D N Y FVEF A A+
Sbjct: 4 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAA 61
Query: 86 LNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDEKLLYDT 131
+N K+ GK ++VN A S KK ++F+G+L P++ + +
Sbjct: 62 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 121
Query: 132 FSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 191
F+ FG I ++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI ++A +
Sbjct: 122 FAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 180
Query: 192 KDTKGERHGTPAERILAANNPSSQKSRPH-TLFASGPPS 229
K + + L+ + SQ S + T++ G S
Sbjct: 181 KPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTS 219
Score = 161 (61.7 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 55/181 (30%), Positives = 89/181 (49%)
Query: 18 SAERNQDAT-AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S +R+QD +VG+L P++T E + F G + + V KD T +GYGFV F ++
Sbjct: 94 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 153
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKASQ-----------DKKSLDV----------GANLF 115
DA+ AI+ + L G+ IR N A++ + K L ++
Sbjct: 154 WDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPGNCTVY 213
Query: 116 IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175
G + + E+L+ TFS FG I+ +I PD +G+ FI + S E++ AI ++N
Sbjct: 214 CGGVTSGLTEQLMRQTFSPFGQIM---EIRVFPD----KGYSFIRFSSHESAAHAIVSVN 266
Query: 176 G 176
G
Sbjct: 267 G 267
Score = 37 (18.1 bits), Expect = 4.2e-22, Sum P(2) = 4.2e-22
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 280 GQ-AAWQGQPQHIGQGV 295
GQ W G Q IGQ V
Sbjct: 303 GQWGQWYGNAQQIGQYV 319
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 239 (89.2 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 63/187 (33%), Positives = 98/187 (52%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
E T YVGNL VTE L+ +LF Q GP N + D N Y FVEF A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHA 59
Query: 80 DYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDE 125
A+ +N K+ GK ++VN A S KK ++F+G+L P++
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185
+ + F+ FG I ++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI
Sbjct: 120 EDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 186 VSYAYKK 192
++A +K
Sbjct: 179 TNWATRK 185
Score = 163 (62.4 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 57/181 (31%), Positives = 91/181 (50%)
Query: 18 SAERNQDAT-AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S +R+QD +VG+L P++T E + F G + + V KD T +GYGFV F ++
Sbjct: 98 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKA------------SQDKK-SLDVGAN--------LF 115
DA+ AI+ + L G+ IR N A S K+ S D N ++
Sbjct: 158 WDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVY 217
Query: 116 IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175
G + + E+L+ TFS FG I+ +I PD +G+ F+ ++S E++ AI ++N
Sbjct: 218 CGGVTSGLTEQLMRQTFSPFGQIM---EIRVFPD----KGYSFVRFNSHESAAHAIVSVN 270
Query: 176 G 176
G
Sbjct: 271 G 271
Score = 37 (18.1 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 277 QVAGQ-AAWQGQPQHIGQ 293
Q GQ W G Q IGQ
Sbjct: 303 QPYGQWGQWYGNAQQIGQ 320
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 239 (89.2 bits), Expect = 4.8e-22, Sum P(2) = 4.8e-22
Identities = 63/187 (33%), Positives = 98/187 (52%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
E T YVGNL VTE L+ +LF Q GP N + D N Y FVEF A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHA 59
Query: 80 DYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDE 125
A+ +N K+ GK ++VN A S KK ++F+G+L P++
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185
+ + F+ FG I ++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI
Sbjct: 120 EDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 186 VSYAYKK 192
++A +K
Sbjct: 179 TNWATRK 185
Score = 163 (62.4 bits), Expect = 9.6e-10, Sum P(2) = 9.6e-10
Identities = 57/181 (31%), Positives = 91/181 (50%)
Query: 18 SAERNQDAT-AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S +R+QD +VG+L P++T E + F G + + V KD T +GYGFV F ++
Sbjct: 98 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKA------------SQDKK-SLDVGAN--------LF 115
DA+ AI+ + L G+ IR N A S K+ S D N ++
Sbjct: 158 WDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVY 217
Query: 116 IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175
G + + E+L+ TFS FG I+ +I PD +G+ F+ ++S E++ AI ++N
Sbjct: 218 CGGVTSGLTEQLMRQTFSPFGQIM---EIRVFPD----KGYSFVRFNSHESAAHAIVSVN 270
Query: 176 G 176
G
Sbjct: 271 G 271
Score = 37 (18.1 bits), Expect = 4.8e-22, Sum P(2) = 4.8e-22
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 277 QVAGQ-AAWQGQPQHIGQ 293
Q GQ W G Q IGQ
Sbjct: 304 QPYGQWGQWYGNAQQIGQ 321
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 237 (88.5 bits), Expect = 4.8e-22, Sum P(2) = 4.8e-22
Identities = 63/187 (33%), Positives = 98/187 (52%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
E T YVGNL VTE L+ +LF Q GP N + D N Y FVEF A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFYEHRHA 59
Query: 80 DYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDE 125
A+ +N K+ GK ++VN A S KK ++F+G+L P++
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185
+ + F+ FG I ++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI
Sbjct: 120 EDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 186 VSYAYKK 192
++A +K
Sbjct: 179 TNWATRK 185
Score = 163 (62.4 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 57/181 (31%), Positives = 91/181 (50%)
Query: 18 SAERNQDAT-AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S +R+QD +VG+L P++T E + F G + + V KD T +GYGFV F ++
Sbjct: 98 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKA------------SQDKK-SLDVGAN--------LF 115
DA+ AI+ + L G+ IR N A S K+ S D N ++
Sbjct: 158 WDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVY 217
Query: 116 IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175
G + + E+L+ TFS FG I+ +I PD +G+ F+ ++S E++ AI ++N
Sbjct: 218 CGGVTSGLTEQLMRQTFSPFGQIM---EIRVFPD----KGYSFVRFNSHESAAHAIVSVN 270
Query: 176 G 176
G
Sbjct: 271 G 271
Score = 39 (18.8 bits), Expect = 4.8e-22, Sum P(2) = 4.8e-22
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 277 QVAGQ-AAWQGQPQHIGQ 293
Q GQ W G Q IGQ
Sbjct: 304 QAYGQWGQWYGNAQQIGQ 321
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 259 (96.2 bits), Expect = 5.8e-22, P = 5.8e-22
Identities = 65/218 (29%), Positives = 109/218 (50%)
Query: 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
H + T ++G+L V E L F Q G +V+V V ++++T +GYGF+EF S
Sbjct: 16 HPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISH 75
Query: 77 EDADYAIKVLNMIKLYGKPI--RVNKASQDK-KSLDVGAN--LFIGNLDPDVDEKLLYDT 131
A+ ++ N ++ G + R+N AS + +D G + +F+G+L PDV + LL +T
Sbjct: 76 AAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQET 135
Query: 132 FSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 191
F V K++ DP TG S+G+GF+ + + A+ MNG Y R + +S A
Sbjct: 136 FRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATP 195
Query: 192 KDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPS 229
K G + + + PS+ + P + + P S
Sbjct: 196 KKNVGVQQQYVTKAVYPVTVPSAVAA-PVQAYVAPPES 232
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 237 (88.5 bits), Expect = 6.3e-22, Sum P(2) = 6.3e-22
Identities = 63/187 (33%), Positives = 98/187 (52%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
E T YVGNL VTE L+ +LF Q GP N + D N Y FVEF A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFYEHRHA 59
Query: 80 DYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDE 125
A+ +N K+ GK ++VN A S KK ++F+G+L P++
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185
+ + F+ FG I ++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI
Sbjct: 120 EDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 186 VSYAYKK 192
++A +K
Sbjct: 179 TNWATRK 185
Score = 163 (62.4 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
Identities = 57/181 (31%), Positives = 91/181 (50%)
Query: 18 SAERNQDAT-AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S +R+QD +VG+L P++T E + F G + + V KD T +GYGFV F ++
Sbjct: 98 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKA------------SQDKK-SLDVGAN--------LF 115
DA+ AI+ + L G+ IR N A S K+ S D N ++
Sbjct: 158 WDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVY 217
Query: 116 IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175
G + + E+L+ TFS FG I+ +I PD +G+ F+ ++S E++ AI ++N
Sbjct: 218 CGGVTSGLTEQLMRQTFSPFGQIM---EIRVFPD----KGYSFVRFNSHESAAHAIVSVN 270
Query: 176 G 176
G
Sbjct: 271 G 271
Score = 39 (18.8 bits), Expect = 6.3e-22, Sum P(2) = 6.3e-22
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 277 QVAGQ-AAWQGQPQHIGQ 293
Q GQ W G Q IGQ
Sbjct: 304 QAYGQWGQWYGNAQQIGQ 321
Score = 39 (18.8 bits), Expect = 6.3e-22, Sum P(2) = 6.3e-22
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 226 GPP-SLQNAPQANGTVGGPVPPRPYANGAASG 256
GP +Q P GT+ V P P G +G
Sbjct: 355 GPNYGVQPPPGPGGTMTQSVEPGPREKGVFTG 386
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 260 (96.6 bits), Expect = 7.3e-22, P = 7.3e-22
Identities = 59/177 (33%), Positives = 104/177 (58%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
+ +Q T YVGNLD V+E+LL LF GPV + + ++ + Y F+E+ + + A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND---PYAFIEYSNYQAA 58
Query: 80 DYAIKVLNMIKLYGKPIRVNKAS----QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
A+ +N K I+VN A+ Q K + ++F+G+L P+++ + L + F+ F
Sbjct: 59 TTALTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPF 118
Query: 136 GVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
G I +N +I+RDP T S+G+ F+S+ ++ AI+AMNGQ++ +R I +++ +K
Sbjct: 119 GEI-SNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRK 174
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 241 (89.9 bits), Expect = 9.6e-22, Sum P(2) = 9.6e-22
Identities = 53/139 (38%), Positives = 86/139 (61%)
Query: 61 VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNL 119
+T GY +V F+ DA+ A+ +N + GKP+R+ + +D G N+FI NL
Sbjct: 2 ITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNL 61
Query: 120 DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 179
D +D K LYDTFSAFG I++ K++ D + G S+G+GF+ +++ EA++ AIE MNG L
Sbjct: 62 DKSIDNKALYDTFSAFGNILSC-KVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLL 118
Query: 180 CNRQITVS-YAYKKDTKGE 197
+R++ V + +K+ + E
Sbjct: 119 NDRKVFVGRFKSRKEREAE 137
Score = 238 (88.8 bits), Expect = 3.6e-19, P = 3.6e-19
Identities = 81/267 (30%), Positives = 125/267 (46%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L +LF + GP ++V V D + +G+GFV F ED
Sbjct: 140 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 198
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N +L GK I V +A QD+ + G NL++ NLD
Sbjct: 199 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 258
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 259 GIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 315
Query: 182 RQITVSYAYKKDTKGERHGTPA--ER---ILAANNP---SSQKSRPHTLFASGPPSLQN- 232
+ + V+ A +K+ + + H T +R + A NP Q + P F + P QN
Sbjct: 316 KPLYVALAQRKEER-QAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNR 374
Query: 233 -APQANGTVGGPVP-PRPYANGAASGP 257
A + P PR A GA P
Sbjct: 375 AAYYPPSQIAQLRPSPRWTAQGARPHP 401
Score = 237 (88.5 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 57/172 (33%), Positives = 100/172 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 57 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 114
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L D F FG ++
Sbjct: 115 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 174
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 175 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 224
Score = 44 (20.5 bits), Expect = 9.6e-22, Sum P(2) = 9.6e-22
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 208 AANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISAVR 262
AA P RP + S P + + + T + PRP A AA+ P AVR
Sbjct: 412 AAPRPPFSTMRPAS---SQVPRVMSTQRVANTSTQTMGPRPAAAAAAATP--AVR 461
>UNIPROTKB|E5RJB9 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI01013146
ProteinModelPortal:E5RJB9 SMR:E5RJB9 Ensembl:ENST00000521865
ArrayExpress:E5RJB9 Bgee:E5RJB9 Uniprot:E5RJB9
Length = 129
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 50/117 (42%), Positives = 74/117 (63%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILS 127
Score = 117 (46.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/89 (26%), Positives = 52/89 (58%)
Query: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
A+L++G+L PDV E +LY+ FS G I++ ++ RD T S G+ ++++ ++ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSI-RVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 172 EAMNGQYLCNRQITVSYAYKKDTKGERHG 200
+ MN + + + + ++ ++D + G
Sbjct: 70 DTMNFDVIKGKPVRIMWS-QRDPSLRKSG 97
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 251 (93.4 bits), Expect = 2.5e-21, P = 2.5e-21
Identities = 61/173 (35%), Positives = 97/173 (56%)
Query: 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYA 82
Q T YVGNL VTE L+ +LF Q GP + + D N Y FVEF A +
Sbjct: 6 QPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGN--DPYCFVEFFEHRHAAAS 63
Query: 83 IKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
+ +N K+ GK ++VN A S KK ++F+G+L P++ + F+ FG I
Sbjct: 64 LAAMNGRKIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGRI- 122
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI ++A +K
Sbjct: 123 SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 175
Score = 122 (48.0 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 48/181 (26%), Positives = 84/181 (46%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+VG+L P++T + + F G + + V KD T +GYGFV F ++ DA+ AI+ +
Sbjct: 99 FVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 158
Query: 88 MIKLYGKPIRVNKASQDKKS--LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN--PK 143
L G+ IR N A++ + N + D V++ + G + T +
Sbjct: 159 GQWLGGRQIRTNWATRKPPAPKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQ 218
Query: 144 IMRDPDT--GN--------SRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
+MR + G +G+ F+ ++S E++ AI ++NG L I Y K+
Sbjct: 219 LMRQTFSPFGQIMEVRVFPDKGYSFVRFNSHESAAHAIVSVNGTSL-EGHIVKCYWGKET 277
Query: 194 T 194
T
Sbjct: 278 T 278
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 254 (94.5 bits), Expect = 3.6e-21, P = 3.6e-21
Identities = 63/188 (33%), Positives = 108/188 (57%)
Query: 10 GANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYG 69
G + + E N+ A YVG LD +VTE++L ++F G V NV + D+ + YG
Sbjct: 71 GGTFTRRTAPEPNKRAL-YVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYN-YG 128
Query: 70 FVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----DKKSLDVGANLFIGNLDPDVD 124
FVE+ AD A++ LN +++ IRVN A Q K+ ++F+G+L +V+
Sbjct: 129 FVEYDDPGAADRAMQTLNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVN 188
Query: 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQI 184
+++L FS FG V+ ++M D TG SRG+GF+++ ++ A+ +M+G++L +R I
Sbjct: 189 DEVLTQAFSVFGS-VSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAI 247
Query: 185 TVSYAYKK 192
++A +K
Sbjct: 248 RCNWANQK 255
Score = 126 (49.4 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 32/90 (35%), Positives = 51/90 (56%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGF--GFISYDSFEASDAAI 171
L++G LD V E +L F G V N KI+ PD N++G+ GF+ YD A+D A+
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGH-VQNVKII--PDK-NAKGYNYGFVEYDDPGAADRAM 142
Query: 172 EAMNGQYLCNRQITVSYAYKKDTKGERHGT 201
+ +NG+ + +I V++AY+ T + T
Sbjct: 143 QTLNGRRVHQSEIRVNWAYQAATSATKEDT 172
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 240 (89.5 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 61/170 (35%), Positives = 95/170 (55%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L++ F + + +V + KD + YG+ F S +DA+ AI+
Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query: 85 VLNMIKLYGKPIRV--NKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 142
N L GK IRV + + D + VG N+F+ NL V +L D F FG IV+
Sbjct: 84 KKNNSLLNGKMIRVMWSVRAPDARRNGVG-NVFVKNLPESVTNAVLQDMFKKFGNIVSC- 141
Query: 143 KIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+ D G SRG+GF+ ++ +A+ AAI+ +N + +++I V KK
Sbjct: 142 KVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK 190
Score = 214 (80.4 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 65/212 (30%), Positives = 107/212 (50%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Y+ NLD V+E+LL E F + G +V++ + KD L +GY FV F + EDA A + +N
Sbjct: 204 YMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 88 MIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYD 130
K K + V +A +++K + +N+++ N++ V E+ L
Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRK 322
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS G I T+ K+M D + G S+GFGF+ + + E + A++ +GQ + + V+ A
Sbjct: 323 HFSQCGTI-TSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Query: 191 KK-DTKGERHGTPAERILAANNPSSQKSRPHT 221
KK D K + R+ A + SS P T
Sbjct: 381 KKEDRKMQLQVQFGNRVEARKSSSSASVNPGT 412
Score = 209 (78.6 bits), Expect = 9.0e-17, Sum P(2) = 9.0e-17
Identities = 61/177 (34%), Positives = 93/177 (52%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A RN +V NL VT +L ++F + G +V+ V +GYGFV+F E+
Sbjct: 106 ARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQEDA 164
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQ--DK-KSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
A AI+ LN + K I V K + D+ K + NL++ NLD DV E LL + F+ F
Sbjct: 165 AHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEF 224
Query: 136 GVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
G IV+ I +D + RG+ F+++D+ E + A E +NG ++ + V A KK
Sbjct: 225 GKIVSLA-IAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK 279
Score = 132 (51.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 34/114 (29%), Positives = 59/114 (51%)
Query: 101 ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFIS 160
AS S V A+L++G+L P V E +LYD F+ F + T+ ++ +D +G S +G+ +
Sbjct: 13 ASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSL-TSVRLCKDASSGRSLCYGYAN 71
Query: 161 YDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSS 214
+ S + ++ AIE N L + I V ++ + R+G + N P S
Sbjct: 72 FLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPD-ARRNGVG--NVFVKNLPES 122
Score = 39 (18.8 bits), Expect = 4.7e-21, Sum P(2) = 4.7e-21
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 217 SRPHTLFASGPPSLQNAPQAN 237
S P++ + PP + NAP N
Sbjct: 443 SYPNSEAVTYPPMVANAPSKN 463
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 257 (95.5 bits), Expect = 6.0e-21, P = 6.0e-21
Identities = 59/169 (34%), Positives = 104/169 (61%)
Query: 22 NQDATAYVGNLDPQVTEELLWELFVQAG--PVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
+Q + YVG+L V E +L ELF + G + +++V +D T GY +V F + DA
Sbjct: 181 HQLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDA 240
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQD--KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGV 137
+ A+ LN ++GKP R+ + +D K+ +VG N+F+ NL+ VD +LYDTFS+FG
Sbjct: 241 ERALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVG-NIFVKNLEKGVDNAMLYDTFSSFGN 299
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186
I++ K+ + + G S+G+G++ +++ ++++ AIE +NG + + I V
Sbjct: 300 ILSC-KV--EFEKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINV 345
Score = 152 (58.6 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 36/115 (31%), Positives = 67/115 (58%)
Query: 89 IKLYGKPIRVNKASQD--------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
I++ GKPI +++ KK+ D+ +LFI N+D +D L+ + F+ G I+
Sbjct: 441 IEINGKPITIDRIKSKVERFTEYRKKTTDL--SLFINNIDESIDRDLIKEEFAKHGTII- 497
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
KI++D + N +GFGFIS+ + + A++++NG ++QI VS++ K + +
Sbjct: 498 GIKIVQDENARN-KGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDNNQ 551
Score = 145 (56.1 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 37/139 (26%), Positives = 70/139 (50%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL+ V +L++ F G +++ V ++ + +GYG+V F + + A+ AI+ +N
Sbjct: 277 FVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEK--GISKGYGYVHFETNDSAEKAIEKVN 334
Query: 88 MIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFS-AFGVIVTNPKIMR 146
+ GKPI V + + V +F N D + ++L S FG I + I++
Sbjct: 335 GTLILGKPINVERFVSKVERYKVENKVFFRNADESITIEILQQELSNRFGEIESC--ILK 392
Query: 147 DPDTGNSRGFGFISYDSFE 165
+ G S+G G + + + E
Sbjct: 393 NDANGKSKGLGLVEFKNQE 411
Score = 64 (27.6 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 31 NLDPQVTEELLW-ELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
N D +T E+L EL + G + + + D +G G VEF+++EDA
Sbjct: 365 NADESITIEILQQELSNRFGEIESCILKND-ANGKSKGLGLVEFKNQEDA 413
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 250 (93.1 bits), Expect = 6.8e-21, P = 6.8e-21
Identities = 75/213 (35%), Positives = 119/213 (55%)
Query: 16 QHSA-ERNQ--DA-TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFV 71
QH A +R D T +VG+L + E L F G V +V V ++++T+ +GYGFV
Sbjct: 95 QHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFV 154
Query: 72 EFRSEEDADYAIKVLN--MIKLYGKPIRVNKAS---QDKKSLDVGANL--FIGNLDPDVD 124
EF S A+ ++ + ++ +P R+N AS +K++++ G +L F+G+L PDV
Sbjct: 155 EFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVT 214
Query: 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLCNRQ 183
+ LL++TFS V + K++ D +TG S+G+GF+ + D E S A E MNG Y NRQ
Sbjct: 215 DVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE-MNGAYCSNRQ 273
Query: 184 ITVSYAYKKDT--KGERHGTPAERILAANNPSS 214
+ V A K ++H + A ILA + S+
Sbjct: 274 MRVGIATPKRAIANQQQHSSQAV-ILAGGHGSN 305
Score = 113 (44.8 bits), Expect = 0.00088, P = 0.00088
Identities = 32/86 (37%), Positives = 48/86 (55%)
Query: 5 IAPGVGANL---LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRV 61
+A G G+N G S + +AT +VG +DP V +E L + F Q G VV+V +P
Sbjct: 298 LAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP---- 353
Query: 62 TNLHQGYGFVEFRSEEDADYAIKVLN 87
+ +G GFV+F + A+ AI+ LN
Sbjct: 354 --VGKGCGFVQFADRKSAEDAIESLN 377
>UNIPROTKB|B1ANR1 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000217922 EMBL:AL845289 UniGene:Hs.169900 HGNC:HGNC:8557
ChiTaRS:PABPC4 IPI:IPI00644016 SMR:B1ANR1 STRING:B1ANR1
Ensembl:ENST00000451091 Uniprot:B1ANR1
Length = 129
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 51/117 (43%), Positives = 73/117 (62%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L VTE +L+E F AGPV+++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+N + GKPIR+ + +D G N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Score = 109 (43.4 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 23/89 (25%), Positives = 51/89 (57%)
Query: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
A+L++G+L DV E +LY+ FS G +++ ++ RD T S G+ ++++ ++ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSI-RVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 172 EAMNGQYLCNRQITVSYAYKKDTKGERHG 200
+ MN + + I + ++ ++D + G
Sbjct: 70 DTMNFDVIKGKPIRIMWS-QRDPSLRKSG 97
>UNIPROTKB|F1NGK7 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 OMA:DRHYSRE EMBL:AADN02041798
EMBL:AADN02041799 IPI:IPI00586092 ProteinModelPortal:F1NGK7
Ensembl:ENSGALT00000011352 Uniprot:F1NGK7
Length = 279
Score = 219 (82.2 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
Identities = 49/100 (49%), Positives = 65/100 (65%)
Query: 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEF 73
+G +AE D T +VGNLDP+VTEEL++ELF QAGPV+ V +PKD+ Q + FV F
Sbjct: 1 MGGTAAEA--DRTLFVGNLDPKVTEELIFELFHQAGPVIKVKIPKDKDGKQKQ-FAFVSF 57
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRV------NKASQDKKS 107
+ EE Y + +LN IKLYG+PI + + ASQD S
Sbjct: 58 KHEESVPYGMNLLNGIKLYGRPINIQFRSGSSHASQDSNS 97
Score = 121 (47.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
LF+GNLDP V E+L+++ F G ++ KI +D D G + F F+S+ E+ +
Sbjct: 12 LFVGNLDPKVTEELIFELFHQAGPVI-KVKIPKDKD-GKQKQFAFVSFKHEESVPYGMNL 69
Query: 174 MNGQYLCNRQITVSY 188
+NG L R I + +
Sbjct: 70 LNGIKLYGRPINIQF 84
Score = 40 (19.1 bits), Expect = 8.4e-21, Sum P(2) = 8.4e-21
Identities = 17/63 (26%), Positives = 24/63 (38%)
Query: 198 RHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGP 257
RH + ++AA PS +S P + A G VP Y +G + G
Sbjct: 118 RHDRNTDSMVAAGFPSMHRSLPSHDNLQRQAGMHGAVWQQSQPGFAVPG--YQHGHSLGH 175
Query: 258 ISA 260
SA
Sbjct: 176 PSA 178
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 243 (90.6 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 62/185 (33%), Positives = 94/185 (50%)
Query: 13 LLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVE 72
LLG + A + V L +T++ LF G + + + +D++T GYGFV
Sbjct: 27 LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVN 86
Query: 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTF 132
+ DAD AI LN +KL K I+V+ A S+ ANL++ L + +K + F
Sbjct: 87 YSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMSQKEMEQLF 145
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAY 190
S +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 146 SQYGRIITS-RILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFAN 204
Query: 191 KKDTK 195
K
Sbjct: 205 NPSQK 209
Score = 155 (59.6 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 31/82 (37%), Positives = 49/82 (59%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL P+ DE +L+ F FG VTN K++RD T +GFGF++ +++ + AI +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA-VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L R + VS+ K K
Sbjct: 345 LNGYRLGERVLQVSFKTSKQHK 366
Score = 132 (51.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P+ E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 287 FVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 346
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K S+ K+
Sbjct: 347 GYRLGERVLQVSFKTSKQHKA 367
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 243 (90.6 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 62/185 (33%), Positives = 94/185 (50%)
Query: 13 LLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVE 72
LLG + A + V L +T++ LF G + + + +D++T GYGFV
Sbjct: 27 LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVN 86
Query: 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTF 132
+ DAD AI LN +KL K I+V+ A S+ ANL++ L + +K + F
Sbjct: 87 YSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMSQKEMEQLF 145
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAY 190
S +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 146 SQYGRIITS-RILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFAN 204
Query: 191 KKDTK 195
K
Sbjct: 205 NPSQK 209
Score = 155 (59.6 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 31/82 (37%), Positives = 49/82 (59%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL P+ DE +L+ F FG VTN K++RD T +GFGF++ +++ + AI +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA-VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L R + VS+ K K
Sbjct: 345 LNGYRLGERVLQVSFKTSKQHK 366
Score = 132 (51.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P+ E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 287 FVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 346
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K S+ K+
Sbjct: 347 GYRLGERVLQVSFKTSKQHKA 367
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 245 (91.3 bits), Expect = 2.3e-20, P = 2.3e-20
Identities = 68/222 (30%), Positives = 121/222 (54%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Q S+E N+ T ++G+L + E L F QAG V++V + +++ T + YGFVEF +
Sbjct: 77 QSSSEDNK--TIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNT 134
Query: 76 EEDADYAIKVLN--MIKLYGKPIRVNKA--SQDKKSLDVGAN--LFIGNLDPDVDEKLLY 129
A+ ++ N M+ +P R+N A S +K + G++ +F+G+L DV + +L
Sbjct: 135 HAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLR 194
Query: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLCNRQITVSY 188
DTF++ + K++ D +TG+S+G+GF+ + D E S A E MNG Y +R + +
Sbjct: 195 DTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTE-MNGVYCSSRAMRIGV 253
Query: 189 AY-KKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPS 229
A KK + E++ + A ++ + +S + H + G S
Sbjct: 254 ATPKKPSAHEQYSSQA--VILSGGYASNGAATHGSQSDGDSS 293
Score = 132 (51.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 37/147 (25%), Positives = 75/147 (51%)
Query: 90 KLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD 149
K+ P ++ +S+D K++ +IG+L +DE L+ FS G +++ KI+R+
Sbjct: 68 KMQQSPTQIQSSSEDNKTI------WIGDLQQWMDESYLHSCFSQAGEVIS-VKIIRNKQ 120
Query: 150 TGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHG-TPAERILA 208
TG S +GF+ +++ A++ +++ NG + N + + + GE+ T ++ +
Sbjct: 121 TGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIF 180
Query: 209 ANNPSSQKSRP--HTLFASGPPSLQNA 233
+ +S + FAS PSL+ A
Sbjct: 181 VGDLASDVTDTMLRDTFASRYPSLKGA 207
Score = 109 (43.4 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 28/94 (29%), Positives = 45/94 (47%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVN-VYVPKDRVTNLHQGYGFVEF 73
G+ AE D + +VG+L VT+ +L + F P + V D T +GYGFV F
Sbjct: 167 GEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRF 226
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS 107
E + A+ +N + + +R+ A+ K S
Sbjct: 227 GDESERSRAMTEMNGVYCSSRAMRIGVATPKKPS 260
Score = 83 (34.3 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+G LD +V ++ L +F+ FG +V+ KI P G +G GF+ + ++ AI+
Sbjct: 297 IFVGGLDSEVTDEELRQSFNQFGEVVS-VKI---P-AG--KGCGFVQFSDRSSAQEAIQK 349
Query: 174 MNGQYLCNRQITVSYAYKKDTKGER 198
++G + + + +S+ K R
Sbjct: 350 LSGAIIGKQAVRLSWGRSPANKQMR 374
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 241 (89.9 bits), Expect = 2.6e-20, P = 2.6e-20
Identities = 62/185 (33%), Positives = 94/185 (50%)
Query: 13 LLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVE 72
LLG + A + V L +T++ LF G + + + +D++T GYGFV
Sbjct: 27 LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVN 86
Query: 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTF 132
+ DAD AI LN +KL K I+V+ A S+ ANL++ L + +K + F
Sbjct: 87 YSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMSQKEMEQLF 145
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAY 190
S +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 146 SQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFAN 204
Query: 191 KKDTK 195
K
Sbjct: 205 NPSQK 209
Score = 155 (59.6 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 31/82 (37%), Positives = 49/82 (59%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL P+ DE +L+ F FG VTN K++RD T +GFGF++ +++ + AI +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA-VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L R + VS+ K K
Sbjct: 345 LNGYRLGERVLQVSFKTSKQHK 366
Score = 132 (51.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P+ E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 287 FVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 346
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K S+ K+
Sbjct: 347 GYRLGERVLQVSFKTSKQHKA 367
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 241 (89.9 bits), Expect = 2.6e-20, P = 2.6e-20
Identities = 62/185 (33%), Positives = 94/185 (50%)
Query: 13 LLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVE 72
LLG + A + V L +T++ LF G + + + +D++T GYGFV
Sbjct: 27 LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVN 86
Query: 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTF 132
+ DAD AI LN +KL K I+V+ A S+ ANL++ L + +K + F
Sbjct: 87 YSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMSQKEMEQLF 145
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAY 190
S +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 146 SQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFAN 204
Query: 191 KKDTK 195
K
Sbjct: 205 NPSQK 209
Score = 155 (59.6 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 31/82 (37%), Positives = 49/82 (59%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL P+ DE +L+ F FG VTN K++RD T +GFGF++ +++ + AI +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA-VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L R + VS+ K K
Sbjct: 345 LNGYRLGERVLQVSFKTSKQHK 366
Score = 132 (51.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P+ E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 287 FVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 346
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K S+ K+
Sbjct: 347 GYRLGERVLQVSFKTSKQHKA 367
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 241 (89.9 bits), Expect = 2.6e-20, P = 2.6e-20
Identities = 62/185 (33%), Positives = 94/185 (50%)
Query: 13 LLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVE 72
LLG + A + V L +T++ LF G + + + +D++T GYGFV
Sbjct: 27 LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVN 86
Query: 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTF 132
+ DAD AI LN +KL K I+V+ A S+ ANL++ L + +K + F
Sbjct: 87 YSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMSQKEMEQLF 145
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAY 190
S +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 146 SQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFAN 204
Query: 191 KKDTK 195
K
Sbjct: 205 NPSQK 209
Score = 155 (59.6 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 31/82 (37%), Positives = 49/82 (59%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL P+ DE +L+ F FG VTN K++RD T +GFGF++ +++ + AI +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGA-VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 344
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L R + VS+ K K
Sbjct: 345 LNGYRLGERVLQVSFKTSKQHK 366
Score = 132 (51.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P+ E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 287 FVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 346
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K S+ K+
Sbjct: 347 GYRLGERVLQVSFKTSKQHKA 367
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 241 (89.9 bits), Expect = 2.6e-20, P = 2.6e-20
Identities = 62/185 (33%), Positives = 94/185 (50%)
Query: 13 LLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVE 72
LLG + A + V L +T++ LF G + + + +D++T GYGFV
Sbjct: 27 LLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVN 86
Query: 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTF 132
+ DAD AI LN +KL K I+V+ A S+ ANL++ L + +K + F
Sbjct: 87 YSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMSQKEMEQLF 145
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAY 190
S +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 146 SQYGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFAN 204
Query: 191 KKDTK 195
K
Sbjct: 205 NPSQK 209
Score = 155 (59.6 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 31/82 (37%), Positives = 49/82 (59%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL P+ DE +L+ F FG VTN K++RD T +GFGF++ +++ + AI +
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGA-VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 345
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L R + VS+ K K
Sbjct: 346 LNGYRLGERVLQVSFKTSKQHK 367
Score = 132 (51.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P+ E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 288 FVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 347
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K S+ K+
Sbjct: 348 GYRLGERVLQVSFKTSKQHKA 368
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 73/235 (31%), Positives = 113/235 (48%)
Query: 16 QHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
Q A + T + N PQ +T+E LF G + + + +D++T GYGFV +
Sbjct: 34 QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 93
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS
Sbjct: 94 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQ 152
Query: 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKK 192
+G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 153 YGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 211
Query: 193 DTKGER------HGTPAERILAANNPSSQKSRPHTLFASGPPSL--QNAPQANGT 239
K + + +P R + +Q+ R + G SL N P GT
Sbjct: 212 SQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRFSPITIDGMTSLVGMNIPGHTGT 266
Score = 153 (58.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG V N K++RD +T +GFGF++ +++ + AI +
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGA-VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 328
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 329 LNGYRLGDRVLQVSFKTNKAHK 350
Score = 121 (47.7 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 271 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 330
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ KS
Sbjct: 331 GYRLGDRVLQVSFKTNKAHKS 351
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 63/180 (35%), Positives = 100/180 (55%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
E +++A +VGNL V + L LF QAG V V +R T+ +G+GFV S ++A
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 80 DYAIKVLNMIKLYGKPIRVNKA----SQDKKSLDV---GANLFIGNLDPDVDEKLLYDTF 132
+ A++ N L G+ + VNKA S+ +++ V +++GNL DVD L F
Sbjct: 205 ETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF 264
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
S G +V +++ D +TG SRGFGF++ + + AI A++GQ L R I V+ A ++
Sbjct: 265 SEHGKVV-EARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
Score = 133 (51.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 37/117 (31%), Positives = 59/117 (50%)
Query: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
A LF+GNL DV+ + L F G + +++ + +T SRGFGF++ S + ++ A+
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEI-AEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 172 EAMNGQYLCNRQITVSYAYKKDTKGERHGT---PAERILAANNP-SSQKSRPHTLFA 224
E N L R +TV+ A + ++ ER PA R+ N P R LF+
Sbjct: 209 EKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFS 265
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
Identities = 63/187 (33%), Positives = 98/187 (52%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
E T YVGNL VTE L+ +LF Q GP N + D N Y FVEF A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHA 59
Query: 80 DYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGA-----------NLFIGNLDPDVDE 125
A+ +N K+ GK ++VN A S KK ++F+G+L P++
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITT 119
Query: 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185
+ + F+ FG I ++ ++++D TG S+G+GF+S+ + ++ AI+ M GQ+L RQI
Sbjct: 120 EDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 178
Query: 186 VSYAYKK 192
++A +K
Sbjct: 179 TNWATRK 185
Score = 131 (51.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 32/87 (36%), Positives = 50/87 (57%)
Query: 18 SAERNQDAT-AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S +R+QD +VG+L P++T E + F G + + V KD T +GYGFV F ++
Sbjct: 98 STQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNK 157
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKASQ 103
DA+ AI+ + L G+ IR N A++
Sbjct: 158 WDAENAIQQMGGQWLGGRQIRTNWATR 184
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 246 (91.7 bits), Expect = 4.1e-20, P = 4.1e-20
Identities = 59/172 (34%), Positives = 101/172 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GY FV F ++E AD AI+ +N
Sbjct: 4 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMN 61
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N +VD++ L + FS FG ++
Sbjct: 62 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS 121
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+MRDP+ G S+GFGF+SY+ E ++ A+E MNG+ + + I V A KK
Sbjct: 122 -VKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 171
Score = 228 (85.3 bits), Expect = 3.7e-18, P = 3.7e-18
Identities = 62/194 (31%), Positives = 103/194 (53%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ + Y+ N +V +E L ELF Q G ++V V +D +G+GFV + ED
Sbjct: 87 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHED 145
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A+ A++ +N ++ GK I V +A Q++ S G NL+I NLD
Sbjct: 146 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 205
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + +
Sbjct: 206 TIDDEKLRKEFSPFGSI-TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 262
Query: 182 RQITVSYAYKKDTK 195
+ + V+ A +K+ +
Sbjct: 263 KPLYVALAQRKEER 276
Score = 171 (65.3 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 38/86 (44%), Positives = 59/86 (68%)
Query: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172
N+FI NLD +D K LYDTFSAFG I++ K++ D + G S+G+ F+ +++ EA+D AIE
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSC-KVVCD-ENG-SKGYAFVHFETQEAADKAIE 58
Query: 173 AMNGQYLCNRQITVS-YAYKKDTKGE 197
MNG L +R++ V + +K+ + E
Sbjct: 59 KMNGMLLNDRKVFVGRFKSRKEREAE 84
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 248 (92.4 bits), Expect = 4.2e-20, P = 4.2e-20
Identities = 60/182 (32%), Positives = 104/182 (57%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S ++ ++ NLD + + L++ F G +++ V D N +GY FV F ++E
Sbjct: 132 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQE 189
Query: 78 DADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYD 130
AD AI+ +N + L + + V + S+ ++ ++GA N++I N +VD++ L +
Sbjct: 190 AADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKE 249
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS FG ++ K+MRDP +G S+GFGF+SY+ E ++ A+E MNG+ + + I V A
Sbjct: 250 LFSQFGKTLS-VKVMRDP-SGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 307
Query: 191 KK 192
KK
Sbjct: 308 KK 309
Score = 230 (86.0 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 62/194 (31%), Positives = 104/194 (53%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ + Y+ N +V +E L ELF Q G ++V V +D + +G+GFV + ED
Sbjct: 225 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKGFGFVSYEKHED 283
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A+ A++ +N ++ GK I V +A Q++ S G NL+I NLD
Sbjct: 284 ANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 343
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + +
Sbjct: 344 TIDDEKLRKEFSPFGSI-TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 400
Query: 182 RQITVSYAYKKDTK 195
+ + V+ A +K+ +
Sbjct: 401 KPLYVALAQRKEER 414
Score = 205 (77.2 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 48/121 (39%), Positives = 76/121 (62%)
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGV 137
A+ A+ +N + GKPIR+ + +D G N+FI NLD +D K LYDTFSAFG
Sbjct: 105 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGN 164
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKG 196
I++ K++ D + G S+G+ F+ +++ EA+D AIE MNG L +R++ V + +K+ +
Sbjct: 165 ILSC-KVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 221
Query: 197 E 197
E
Sbjct: 222 E 222
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 242 (90.2 bits), Expect = 5.3e-20, P = 5.3e-20
Identities = 67/201 (33%), Positives = 103/201 (51%)
Query: 15 GQHSAERNQDA-TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEF 73
G A ++D T +V NLDP +T+E L LF Q G V+ + + L+ Y FVEF
Sbjct: 29 GFQLASGSEDPRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFE---GLNDPYAFVEF 85
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRVNKA--------SQDKKSLDVGANLFIGNLDPDVDE 125
A A++ N +L K + V A ++ K ++F+G+L ++D
Sbjct: 86 SDHNQATLALQSHNGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDS 145
Query: 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185
L + F FG V+ KI+RD +T +G+GF+SY E ++ AI+ MNG +L R I
Sbjct: 146 TKLREAFVKFGE-VSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIR 204
Query: 186 VSYAYKK-DTKGERHGTPAER 205
++A +K D GER G +R
Sbjct: 205 TNWATRKPDEDGERGGDRGDR 225
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 238 (88.8 bits), Expect = 8.7e-20, P = 8.7e-20
Identities = 63/181 (34%), Positives = 98/181 (54%)
Query: 22 NQDA-TAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
++D+ T + N PQ +T+E L LF G + + + +D++T GYGFV + +DA
Sbjct: 63 SEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDA 122
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS FG I+
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQFGRII 181
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTKGE 197
T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K
Sbjct: 182 TS-RILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITVKFANNPSQKSS 240
Query: 198 R 198
+
Sbjct: 241 Q 241
Score = 160 (61.4 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG VTN K++RD +T +GFGF++ +++ + AI +
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIAS 365
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 366 LNGYRLGDRVLQVSFKTNKTHK 387
Score = 120 (47.3 bits), Expect = 0.00012, P = 0.00012
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW++F G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 308 FVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASLN 367
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ K+
Sbjct: 368 GYRLGDRVLQVSFKTNKTHKA 388
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 235 (87.8 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 62/181 (34%), Positives = 94/181 (51%)
Query: 18 SAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S T + N PQ +T+E L LF G + + + +D++T GYGFV +
Sbjct: 31 SGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDT 194
I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 150 RIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQ 208
Query: 195 K 195
K
Sbjct: 209 K 209
Score = 160 (61.4 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG VTN K++RD +T +GFGF++ +++ + AI +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 337 LNGYRLGDRVLQVSFKTNKTHK 358
Score = 121 (47.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW++F G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 279 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ K+
Sbjct: 339 GYRLGDRVLQVSFKTNKTHKA 359
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 235 (87.8 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 62/181 (34%), Positives = 94/181 (51%)
Query: 18 SAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S T + N PQ +T+E L LF G + + + +D++T GYGFV +
Sbjct: 31 SGNTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDT 194
I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 150 RIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQ 208
Query: 195 K 195
K
Sbjct: 209 K 209
Score = 160 (61.4 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG VTN K++RD +T +GFGF++ +++ + AI +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 337 LNGYRLGDRVLQVSFKTNKTHK 358
Score = 121 (47.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW++F G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 279 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ K+
Sbjct: 339 GYRLGDRVLQVSFKTNKTHKA 359
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 236 (88.1 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 74/240 (30%), Positives = 114/240 (47%)
Query: 16 QHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
Q A + T + N PQ +T+E LF G + + + +D++T GYGFV +
Sbjct: 29 QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQ 147
Query: 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKK 192
+G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 148 YGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 206
Query: 193 DTKGER------HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 246
K + + +P R + +Q+ R L L A + GPVPP
Sbjct: 207 SQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL-------LNMAYGVKRLMSGPVPP 259
Score = 153 (58.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG V N K++RD +T +GFGF++ +++ + AI +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGA-VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 350
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 351 LNGYRLGDRVLQVSFKTNKAHK 372
Score = 121 (47.7 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 293 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 352
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ KS
Sbjct: 353 GYRLGDRVLQVSFKTNKAHKS 373
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 236 (88.1 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 74/240 (30%), Positives = 114/240 (47%)
Query: 16 QHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
Q A + T + N PQ +T+E LF G + + + +D++T GYGFV +
Sbjct: 29 QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 88
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS
Sbjct: 89 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQ 147
Query: 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKK 192
+G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 148 YGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 206
Query: 193 DTKGER------HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 246
K + + +P R + +Q+ R L L A + GPVPP
Sbjct: 207 SQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL-------LNMAYGVKRLMSGPVPP 259
Score = 153 (58.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG V N K++RD +T +GFGF++ +++ + AI +
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGA-VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 350
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 351 LNGYRLGDRVLQVSFKTNKAHK 372
Score = 121 (47.7 bits), Expect = 8.5e-05, P = 8.5e-05
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 293 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 352
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ KS
Sbjct: 353 GYRLGDRVLQVSFKTNKAHKS 373
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 240 (89.5 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 74/239 (30%), Positives = 116/239 (48%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L ELF + GP ++V V D + +G+GFV F ED
Sbjct: 17 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 75
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N +L GK I V +A QD+ + G NL++ NLD
Sbjct: 76 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 135
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 136 GIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 192
Query: 182 RQITVSYAYKKDTKGERHGTPA--ER---ILAANNP---SSQKSRPHTLFASGPPSLQN 232
+ + V+ A +K+ + + H T +R + A NP Q + P F + P QN
Sbjct: 193 KPLYVALAQRKEER-QAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 250
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 73/233 (31%), Positives = 111/233 (47%)
Query: 18 SAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S T + N PQ +T+E L LF G + + + +D++T GYGFV +
Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDT 194
I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 150 RIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQ 208
Query: 195 K------GERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQ--NAPQANGT 239
K + + +P R +Q+ R + G SL N P GT
Sbjct: 209 KTNQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGT 261
Score = 160 (61.4 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG VTN K++RD +T +GFGF++ +++ + AI +
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 323
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 324 LNGYRLGDRVLQVSFKTNKTHK 345
Score = 121 (47.7 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW++F G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 266 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 325
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ K+
Sbjct: 326 GYRLGDRVLQVSFKTNKTHKA 346
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 60/180 (33%), Positives = 98/180 (54%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
E ++A +VGNL V + L LF QAG V V +R T+ +G+GFV + E+A
Sbjct: 108 EPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEA 167
Query: 80 DYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTF 132
+ A++ N ++ G+ + VN+A+ + + D +++GNL DVD L F
Sbjct: 168 EKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF 227
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
S G +V + +++ D +TG SRGFGF+ + + AI A++GQ L R I V+ A ++
Sbjct: 228 SEHGKVV-DARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEER 286
Score = 140 (54.3 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 39/117 (33%), Positives = 61/117 (52%)
Query: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
A LF+GNL DVD + L F G + + +++ + DT SRGFGF++ + E ++ A+
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEIS-EVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 172 EAMNGQYLCNRQITVSYAYKKDTKGERHGT---PAERILAANNPSSQKS-RPHTLFA 224
E N + R++TV+ A + ++ ER A RI N P S R LF+
Sbjct: 172 EKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFS 228
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 236 (88.1 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 74/240 (30%), Positives = 114/240 (47%)
Query: 16 QHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
Q A + T + N PQ +T+E LF G + + + +D++T GYGFV +
Sbjct: 36 QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 95
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS
Sbjct: 96 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQ 154
Query: 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKK 192
+G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 155 YGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 213
Query: 193 DTKGER------HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 246
K + + +P R + +Q+ R L L A + GPVPP
Sbjct: 214 SQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL-------LNMAYGVKRLMSGPVPP 266
Score = 153 (58.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG V N K++RD +T +GFGF++ +++ + AI +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGA-VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 357
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 358 LNGYRLGDRVLQVSFKTNKAHK 379
Score = 121 (47.7 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 300 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 359
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ KS
Sbjct: 360 GYRLGDRVLQVSFKTNKAHKS 380
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 236 (88.1 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 74/240 (30%), Positives = 114/240 (47%)
Query: 16 QHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
Q A + T + N PQ +T+E LF G + + + +D++T GYGFV +
Sbjct: 36 QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 95
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS
Sbjct: 96 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQ 154
Query: 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKK 192
+G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 155 YGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 213
Query: 193 DTKGER------HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 246
K + + +P R + +Q+ R L L A + GPVPP
Sbjct: 214 SQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL-------LNMAYGVKRLMSGPVPP 266
Score = 153 (58.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG V N K++RD +T +GFGF++ +++ + AI +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGA-VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 357
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 358 LNGYRLGDRVLQVSFKTNKAHK 379
Score = 121 (47.7 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 300 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 359
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ KS
Sbjct: 360 GYRLGDRVLQVSFKTNKAHKS 380
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 236 (88.1 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 74/240 (30%), Positives = 114/240 (47%)
Query: 16 QHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
Q A + T + N PQ +T+E LF G + + + +D++T GYGFV +
Sbjct: 40 QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 99
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS
Sbjct: 100 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQ 158
Query: 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKK 192
+G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 159 YGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 217
Query: 193 DTKGER------HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 246
K + + +P R + +Q+ R L L A + GPVPP
Sbjct: 218 SQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL-------LNMAYGVKRLMSGPVPP 270
Score = 153 (58.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG V N K++RD +T +GFGF++ +++ + AI +
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGA-VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 361
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 362 LNGYRLGDRVLQVSFKTNKAHK 383
Score = 121 (47.7 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 304 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 363
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ KS
Sbjct: 364 GYRLGDRVLQVSFKTNKAHKS 384
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 236 (88.1 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 74/240 (30%), Positives = 114/240 (47%)
Query: 16 QHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
Q A + T + N PQ +T+E LF G + + + +D++T GYGFV +
Sbjct: 41 QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 100
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS
Sbjct: 101 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQ 159
Query: 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKK 192
+G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 160 YGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 218
Query: 193 DTKGER------HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 246
K + + +P R + +Q+ R L L A + GPVPP
Sbjct: 219 SQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL-------LNMAYGVKRLMSGPVPP 271
Score = 153 (58.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG V N K++RD +T +GFGF++ +++ + AI +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGA-VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 362
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 363 LNGYRLGDRVLQVSFKTNKAHK 384
Score = 121 (47.7 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 305 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 364
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ KS
Sbjct: 365 GYRLGDRVLQVSFKTNKAHKS 385
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 236 (88.1 bits), Expect = 1.4e-19, P = 1.4e-19
Identities = 74/240 (30%), Positives = 114/240 (47%)
Query: 16 QHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
Q A + T + N PQ +T+E LF G + + + +D++T GYGFV +
Sbjct: 41 QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 100
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS
Sbjct: 101 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQ 159
Query: 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKK 192
+G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 160 YGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 218
Query: 193 DTKGER------HGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPP 246
K + + +P R + +Q+ R L L A + GPVPP
Sbjct: 219 SQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNL-------LNMAYGVKRLMSGPVPP 271
Score = 153 (58.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG V N K++RD +T +GFGF++ +++ + AI +
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGA-VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 362
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 363 LNGYRLGDRVLQVSFKTNKAHK 384
Score = 121 (47.7 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 305 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 364
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ KS
Sbjct: 365 GYRLGDRVLQVSFKTNKAHKS 385
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 236 (88.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 62/181 (34%), Positives = 94/181 (51%)
Query: 18 SAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S T + N PQ +T+E L LF G + + + +D++T GYGFV +
Sbjct: 59 SGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDP 118
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G
Sbjct: 119 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYG 177
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY--LCNRQITVSYAYKKDT 194
I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 178 RIITS-RILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEPITVKFANNPSQ 236
Query: 195 K 195
K
Sbjct: 237 K 237
Score = 160 (61.4 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG VTN K++RD +T +GFGF++ +++ + AI +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 365
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 366 LNGYRLGDRVLQVSFKTNKTHK 387
Score = 121 (47.7 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW++F G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 308 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 367
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ K+
Sbjct: 368 GYRLGDRVLQVSFKTNKTHKA 388
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 233 (87.1 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 62/181 (34%), Positives = 94/181 (51%)
Query: 18 SAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S T + N PQ +T+E L LF G + + + +D++T GYGFV +
Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDT 194
I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 150 RIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQ 208
Query: 195 K 195
K
Sbjct: 209 K 209
Score = 160 (61.4 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG VTN K++RD +T +GFGF++ +++ + AI +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 337 LNGYRLGDRVLQVSFKTNKTHK 358
Score = 121 (47.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW++F G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 279 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 338
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ K+
Sbjct: 339 GYRLGDRVLQVSFKTNKTHKA 359
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 233 (87.1 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 62/181 (34%), Positives = 94/181 (51%)
Query: 18 SAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S T + N PQ +T+E L LF G + + + +D++T GYGFV +
Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDT 194
I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 150 RIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQ 208
Query: 195 K 195
K
Sbjct: 209 K 209
Score = 160 (61.4 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG VTN K++RD +T +GFGF++ +++ + AI +
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 337
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 338 LNGYRLGDRVLQVSFKTNKTHK 359
Score = 121 (47.7 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW++F G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 280 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 339
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ K+
Sbjct: 340 GYRLGDRVLQVSFKTNKTHKA 360
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 240 (89.5 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 74/239 (30%), Positives = 116/239 (48%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L ELF + GP ++V V D + +G+GFV F ED
Sbjct: 121 ARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 179
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N +L GK I V +A QD+ + G NL++ NLD
Sbjct: 180 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 239
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 240 GIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 296
Query: 182 RQITVSYAYKKDTKGERHGTPA--ER---ILAANNP---SSQKSRPHTLFASGPPSLQN 232
+ + V+ A +K+ + + H T +R + A NP Q + P F + P QN
Sbjct: 297 KPLYVALAQRKEER-QAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 354
Score = 233 (87.1 bits), Expect = 1.2e-18, P = 1.2e-18
Identities = 56/172 (32%), Positives = 100/172 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 38 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 95
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L + F FG ++
Sbjct: 96 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS 155
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 156 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 205
Score = 207 (77.9 bits), Expect = 4.5e-15, P = 4.5e-15
Identities = 47/121 (38%), Positives = 77/121 (63%)
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGV 137
A+ A+ +N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKG 196
I++ K++ D + G S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ +
Sbjct: 61 ILSC-KVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 117
Query: 197 E 197
E
Sbjct: 118 E 118
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 233 (87.1 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 62/186 (33%), Positives = 96/186 (51%)
Query: 16 QHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
Q A + T + N PQ +T+E LF G + + + +D++T GYGFV +
Sbjct: 36 QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 95
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS
Sbjct: 96 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQ 154
Query: 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKK 192
+G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 155 YGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 213
Query: 193 DTKGER 198
K +
Sbjct: 214 SQKSSQ 219
Score = 153 (58.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG V N K++RD +T +GFGF++ +++ + AI +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGA-VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 343
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 344 LNGYRLGDRVLQVSFKTNKAHK 365
Score = 121 (47.7 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 286 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 345
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ KS
Sbjct: 346 GYRLGDRVLQVSFKTNKAHKS 366
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 233 (87.1 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 62/186 (33%), Positives = 96/186 (51%)
Query: 16 QHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
Q A + T + N PQ +T+E LF G + + + +D++T GYGFV +
Sbjct: 36 QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 95
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS
Sbjct: 96 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQ 154
Query: 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKK 192
+G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 155 YGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 213
Query: 193 DTKGER 198
K +
Sbjct: 214 SQKSSQ 219
Score = 153 (58.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG V N K++RD +T +GFGF++ +++ + AI +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGA-VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 343
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 344 LNGYRLGDRVLQVSFKTNKAHK 365
Score = 121 (47.7 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 286 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 345
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ KS
Sbjct: 346 GYRLGDRVLQVSFKTNKAHKS 366
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 237 (88.5 bits), Expect = 2.3e-19, P = 2.3e-19
Identities = 71/242 (29%), Positives = 119/242 (49%)
Query: 23 QDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADY 81
+ T + N PQ +T+E + LF G + + + +D+VT GYGFV + EEDA
Sbjct: 39 ESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDALR 98
Query: 82 AIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
A+ N ++L K I+V+ A + G+NL++ + + L F FG I+T+
Sbjct: 99 AVSSFNGLRLQNKTIKVSYARPSNDQIK-GSNLYVSGIPKSMTLHELESIFRPFGQIITS 157
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDTKGERH 199
+I+ D TG S+G GF+ +D + +D AI+ +NG C+ QITV +A + +
Sbjct: 158 -RILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQITVKFANNPASNNPK- 215
Query: 200 GTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPIS 259
G ++ L A ++ P + G P+L+ A G GP+ P + P+
Sbjct: 216 GLLSD--LEAVQQAATTLVPLSTIL-GAPTLRAT--AGGI--GPMHHAPITSKYRYSPMG 268
Query: 260 AV 261
A+
Sbjct: 269 AI 270
Score = 126 (49.4 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
G LF+ NL D D+ LL+ FS FG IV N KI+RD T +G+ F+S ++ + A
Sbjct: 373 GYCLFVYNLSSDTDDTLLWQLFSQFGAIV-NVKILRDL-TQQCKGYAFVSMSNYTEAYNA 430
Query: 171 IEAMNGQYLCNRQITVSYAYKKDT 194
+ ++NG L + T+ +K T
Sbjct: 431 MLSLNGTNLAGK--TLQVVFKSST 452
Score = 113 (44.8 bits), Expect = 0.00094, P = 0.00094
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL + LLW+LF Q G +VNV + +D +T +GY FV + +A A+ LN
Sbjct: 377 FVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD-LTQQCKGYAFVSMSNYTEAYNAMLSLN 435
Query: 88 MIKLYGKPIRV 98
L GK ++V
Sbjct: 436 GTNLAGKTLQV 446
Score = 104 (41.7 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S ++ + + YV + +T L +F G ++ + D VT L +G GFV F ++
Sbjct: 121 SNDQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKD 180
Query: 78 DADYAIKVLN 87
+AD AIK LN
Sbjct: 181 EADVAIKTLN 190
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 63/200 (31%), Positives = 102/200 (51%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L +LF + GP ++V V D + +G+GFV F ED
Sbjct: 18 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 76
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N +L GK I V +A QD+ + G NL++ NLD
Sbjct: 77 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 136
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 137 GIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 193
Query: 182 RQITVSYAYKKDTKGERHGT 201
+ + V+ A +K+ + + H T
Sbjct: 194 KPLYVALAQRKEER-QAHLT 212
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 233 (87.1 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 62/186 (33%), Positives = 96/186 (51%)
Query: 16 QHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
Q A + T + N PQ +T+E LF G + + + +D++T GYGFV +
Sbjct: 41 QTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 100
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS
Sbjct: 101 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQ 159
Query: 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKK 192
+G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 160 YGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 218
Query: 193 DTKGER 198
K +
Sbjct: 219 SQKSSQ 224
Score = 153 (58.9 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG V N K++RD +T +GFGF++ +++ + AI +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGA-VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 348
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 349 LNGYRLGDRVLQVSFKTNKAHK 370
Score = 121 (47.7 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 291 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 350
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ KS
Sbjct: 351 GYRLGDRVLQVSFKTNKAHKS 371
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 200 (75.5 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 46/129 (35%), Positives = 76/129 (58%)
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVD 124
Y FVEF DA A+ +N K+ GK ++VN A S KK ++F+G+L P++
Sbjct: 68 YCFVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 127
Query: 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFIS-YDSFEASDAAIEAMNGQYLCNRQ 183
+ F+ FG I ++ ++++D TG S+G+GF+S Y+ +A +A + M GQ+L RQ
Sbjct: 128 TDDIRAAFAPFGKI-SDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQ 185
Query: 184 ITVSYAYKK 192
I ++A +K
Sbjct: 186 IRTNWATRK 194
Score = 148 (57.2 bits), Expect = 7.4e-08, P = 7.4e-08
Identities = 53/170 (31%), Positives = 83/170 (48%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+VG+L P++T + + F G + + V KD T +GYGFV F ++ DA+ AI +
Sbjct: 118 FVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMG 177
Query: 88 MIKLYGKPIRVN---------KASQDK--KSL--DVGAN--------LFIGNLDPDVDEK 126
L G+ IR N K+ QD K L D N ++ G + + E
Sbjct: 178 GQWLGGRQIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQSGLTEH 237
Query: 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176
L+ TFS FG I+ +I P+ +G+ FI + S E++ AI ++NG
Sbjct: 238 LMRQTFSPFGQIM---EIRVFPE----KGYSFIRFSSHESAAHAIVSVNG 280
Score = 77 (32.2 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGP 50
+ + T YVGNL VTE L+ +LF Q GP
Sbjct: 3 DESHPKTLYVGNLSRDVTENLILQLFTQIGP 33
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 233 (87.1 bits), Expect = 3.0e-19, P = 3.0e-19
Identities = 62/186 (33%), Positives = 96/186 (51%)
Query: 16 QHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
Q A + T + N PQ +T+E LF G + + + +D++T GYGFV +
Sbjct: 52 QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 111
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS
Sbjct: 112 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQ 170
Query: 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKK 192
+G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 171 YGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 229
Query: 193 DTKGER 198
K +
Sbjct: 230 SQKSSQ 235
Score = 153 (58.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG V N K++RD +T +GFGF++ +++ + AI +
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGA-VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 359
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 360 LNGYRLGDRVLQVSFKTNKAHK 381
Score = 121 (47.7 bits), Expect = 8.8e-05, P = 8.8e-05
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 302 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 361
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ KS
Sbjct: 362 GYRLGDRVLQVSFKTNKAHKS 382
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 233 (87.1 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 62/181 (34%), Positives = 94/181 (51%)
Query: 18 SAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S T + N PQ +T+E L LF G + + + +D++T GYGFV +
Sbjct: 59 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 118
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G
Sbjct: 119 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYG 177
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDT 194
I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 178 RIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQ 236
Query: 195 K 195
K
Sbjct: 237 K 237
Score = 160 (61.4 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG VTN K++RD +T +GFGF++ +++ + AI +
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 364
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 365 LNGYRLGDRVLQVSFKTNKTHK 386
Score = 121 (47.7 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW++F G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 307 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 366
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ K+
Sbjct: 367 GYRLGDRVLQVSFKTNKTHKA 387
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 232 (86.7 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 62/183 (33%), Positives = 95/183 (51%)
Query: 16 QHSAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
Q A + T + N PQ +T+E LF G + + + +D++T GYGFV +
Sbjct: 41 QTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 100
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS
Sbjct: 101 DPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQ 159
Query: 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKK 192
+G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 160 YGRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNP 218
Query: 193 DTK 195
K
Sbjct: 219 SQK 221
Score = 154 (59.3 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG V N K++RD +T +GFGF++ +++ + AI +
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGA-VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 348
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 349 LNGYRLGDRVLQVSFKTNKTHK 370
Score = 122 (48.0 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 291 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 350
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ KS
Sbjct: 351 GYRLGDRVLQVSFKTNKTHKS 371
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 233 (87.1 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 62/181 (34%), Positives = 94/181 (51%)
Query: 18 SAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S T + N PQ +T+E L LF G + + + +D++T GYGFV +
Sbjct: 60 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 119
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYG 178
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDT 194
I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 179 RIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQ 237
Query: 195 K 195
K
Sbjct: 238 K 238
Score = 160 (61.4 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG VTN K++RD +T +GFGF++ +++ + AI +
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 365
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 366 LNGYRLGDRVLQVSFKTNKTHK 387
Score = 121 (47.7 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW++F G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 308 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 367
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ K+
Sbjct: 368 GYRLGDRVLQVSFKTNKTHKA 388
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 233 (87.1 bits), Expect = 3.2e-19, P = 3.2e-19
Identities = 62/181 (34%), Positives = 94/181 (51%)
Query: 18 SAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S T + N PQ +T+E L LF G + + + +D++T GYGFV +
Sbjct: 60 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 119
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G
Sbjct: 120 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYG 178
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKDT 194
I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 179 RIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQ 237
Query: 195 K 195
K
Sbjct: 238 K 238
Score = 149 (57.5 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 29/73 (39%), Positives = 47/73 (64%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG VTN K++RD +T +GFGF++ +++ + AI +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 366
Query: 174 MNGQYLCNRQITV 186
+NG L +R + V
Sbjct: 367 LNGYRLGDRVLQV 379
Score = 126 (49.4 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW++F G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 309 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 368
Query: 88 MIKLYGKPIRVNKASQDKKS 107
+L + ++V K ++ K+
Sbjct: 369 GYRLGDRVLQVFKTNKTHKA 388
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 238 (88.8 bits), Expect = 3.7e-19, P = 3.7e-19
Identities = 81/267 (30%), Positives = 125/267 (46%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L +LF + GP ++V V D + +G+GFV F ED
Sbjct: 153 ARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHED 211
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N +L GK I V +A QD+ + G NL++ NLD
Sbjct: 212 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 271
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 272 GIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 328
Query: 182 RQITVSYAYKKDTKGERHGTPA--ER---ILAANNP---SSQKSRPHTLFASGPPSLQN- 232
+ + V+ A +K+ + + H T +R + A NP Q + P F + P QN
Sbjct: 329 KPLYVALAQRKEER-QAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNR 387
Query: 233 -APQANGTVGGPVP-PRPYANGAASGP 257
A + P PR A GA P
Sbjct: 388 AAYYPPSQIAQLRPSPRWTAQGARPHP 414
Score = 208 (78.3 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
Identities = 49/137 (35%), Positives = 83/137 (60%)
Query: 63 NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLF 115
N +GYGFV F ++E A+ AI+ +N + L + + V + S+ ++ ++GA N++
Sbjct: 103 NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 162
Query: 116 IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175
I N D+D++ L D F FG ++ K+M D ++G S+GFGF+S++ E + A++ MN
Sbjct: 163 IKNFGEDMDDERLKDLFGKFGPALS-VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 220
Query: 176 GQYLCNRQITVSYAYKK 192
G+ L +QI V A KK
Sbjct: 221 GKELNGKQIYVGRAQKK 237
Score = 168 (64.2 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 31/80 (38%), Positives = 51/80 (63%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD 104
+N + GKP+R+ + +D
Sbjct: 71 TMNFDVIKGKPVRIMWSQRD 90
Score = 117 (46.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 24/89 (26%), Positives = 52/89 (58%)
Query: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
A+L++G+L PDV E +LY+ FS G I++ ++ RD T S G+ ++++ ++ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSI-RVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 172 EAMNGQYLCNRQITVSYAYKKDTKGERHG 200
+ MN + + + + ++ ++D + G
Sbjct: 70 DTMNFDVIKGKPVRIMWS-QRDPSLRKSG 97
Score = 44 (20.5 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 208 AANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPISAVR 262
AA P RP + S P + + + T + PRP A AA+ P AVR
Sbjct: 425 AAPRPPFSTMRPAS---SQVPRVMSTQRVANTSTQTMGPRPAAAAAAATP--AVR 474
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 57/161 (35%), Positives = 88/161 (54%)
Query: 18 SAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE 76
S T + N PQ +T+E L LF G + + + +D++T GYGFV +
Sbjct: 31 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYG 149
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 177
I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ
Sbjct: 150 RIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 116 (45.9 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 28/81 (34%), Positives = 45/81 (55%)
Query: 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 168
D NL + L ++ ++ L F + G I + K++RD TG S G+GF++Y + ++
Sbjct: 36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEI-ESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 169 AAIEAMNGQYLCNRQITVSYA 189
AI +NG L + I VSYA
Sbjct: 95 KAINTLNGLRLQTKTIKVSYA 115
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 233 (87.1 bits), Expect = 4.2e-19, P = 4.2e-19
Identities = 62/178 (34%), Positives = 95/178 (53%)
Query: 22 NQDA-TAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
N D+ T + N PQ +T+E LF G + + + +D++T GYGFV + +DA
Sbjct: 83 NDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 142
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +G I+
Sbjct: 143 EKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQYGRII 201
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAYKKDTK 195
T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A K
Sbjct: 202 TS-RILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQK 258
Score = 154 (59.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG V N K++RD +T +GFGF++ +++ + AI +
Sbjct: 327 IFVYNLSPDSDESVLWQLFGPFGA-VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 385
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 386 LNGYRLGDRVLQVSFKTNKTHK 407
Score = 122 (48.0 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW+LF G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 328 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 387
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ KS
Sbjct: 388 GYRLGDRVLQVSFKTNKTHKS 408
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 216 (81.1 bits), Expect = 6.9e-19, Sum P(2) = 6.9e-19
Identities = 51/167 (30%), Positives = 92/167 (55%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N
Sbjct: 96 YVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQMN 155
Query: 88 MIKLYGKPIRVNKASQ--------DKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGV 137
+ L G+ I+V + S D+ + + A +++ ++ PD+ + + F AFG
Sbjct: 156 SVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGR 215
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 179
I + + RDP TG +G+GFI YD +++ A+ +MN GQYL
Sbjct: 216 I-KSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSSMNLFDLGGQYL 261
Score = 120 (47.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 25/94 (26%), Positives = 49/94 (52%)
Query: 8 GVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQG 67
G ++ Q + E YV ++ P ++++ + +F G + + + +D T H+G
Sbjct: 173 GQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKG 232
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
YGF+E+ + A A+ +N+ L G+ +RV KA
Sbjct: 233 YGFIEYDKAQSAQDAVSSMNLFDLGGQYLRVGKA 266
Score = 42 (19.8 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 7/36 (19%), Positives = 21/36 (58%)
Query: 158 FISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
F+ + + + AI+A+N ++ R++ ++ Y ++
Sbjct: 495 FVEFSAASEMNKAIQALNNRWFGGRKV-IAEVYDQE 529
Score = 41 (19.5 bits), Expect = 6.9e-19, Sum P(2) = 6.9e-19
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 228 PSLQNAPQANGTVGGPVPPRP 248
P A QA G + G P RP
Sbjct: 343 PQAVMAAQAPGVITGVTPARP 363
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 232 (86.7 bits), Expect = 7.4e-19, P = 7.4e-19
Identities = 68/203 (33%), Positives = 107/203 (52%)
Query: 26 TAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
T + N PQ ++++ + LFV G V + + +D+VT GYGFV + +EDA+ AI
Sbjct: 110 TNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQEDAEKAIN 169
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
LN ++L K I+V+ A +S+ GANL++ L ++ + L FS +G I+T+ +I
Sbjct: 170 ALNGLRLQNKTIKVSIARPSSESIK-GANLYVSGLPKNMTQSDLESLFSPYGKIITS-RI 227
Query: 145 MRDPDTGN-----SRGFGFISYDS-FEASDAAIEAMNGQYLCN--RQITVSYAYKKDTKG 196
+ D TG S+G GFI +D FEA D AI+ +NG N ITV +A +
Sbjct: 228 LCDNITGEHAAGLSKGVGFIRFDQRFEA-DRAIKELNGTTPKNSTEPITVKFA-NNPSSN 285
Query: 197 ERHGTPAERILAANNPSSQKSRP 219
+ P +A N ++ P
Sbjct: 286 KNSMQPLAAYIAPQNTRGGRAFP 308
Score = 149 (57.5 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD +E +L+ F FG V + K++RD + +GFGF++ ++E + AI++
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGA-VQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQS 421
Query: 174 MNGQYLCNRQITVSYAYKKD 193
+NG L NR + VS+ K+
Sbjct: 422 LNGYTLGNRVLQVSFKTNKN 441
Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW+LF G V +V V +D +N +G+GFV + E+A AI+ LN
Sbjct: 364 FVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLN 423
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
L + ++V+ K +++K++
Sbjct: 424 GYTLGNRVLQVSFKTNKNKQT 444
Score = 98 (39.6 bits), Expect = 4.5e-14, Sum P(2) = 4.5e-14
Identities = 33/105 (31%), Positives = 49/105 (46%)
Query: 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLH-----QGY 68
+ + S+E + A YV L +T+ L LF G ++ + D +T H +G
Sbjct: 185 IARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILCDNITGEHAAGLSKGV 244
Query: 69 GFVEFRSEEDADYAIKVLNMI--KLYGKPIRV---NKASQDKKSL 108
GF+ F +AD AIK LN K +PI V N S +K S+
Sbjct: 245 GFIRFDQRFEADRAIKELNGTTPKNSTEPITVKFANNPSSNKNSM 289
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 233 (87.1 bits), Expect = 8.8e-19, P = 8.8e-19
Identities = 70/239 (29%), Positives = 115/239 (48%)
Query: 28 YVGNLDPQVTEELLWELFVQAG-PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL 86
YVGNL +EE + ELF G PV + + D+ Y F+E+ + E AD A+ L
Sbjct: 82 YVGNLPKSASEETIQELFSVGGNPVKTIKILNDK-NKAGFNYAFIEYDTNEVADMALNTL 140
Query: 87 NMIKLYGKPIRVNKASQD-------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
N + I+VN A Q + + N+F+G+L P+V+++ L + FS F +
Sbjct: 141 NGRLVDDVEIKVNWAFQSAAIAGNPNNTEEPLFNIFVGDLSPEVNDEGLRNAFSKFESL- 199
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
+M D T SRG+GF+++ + ++ A++ MNG++LC R I ++A K + ++H
Sbjct: 200 KQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQQQQQQH 259
Query: 200 -----GTPAERILAANNPSSQKSRPHTLFAS---GPPSLQNAPQANGTVG--GPVPPRP 248
G R NN + +R F + G + + P N G PP+P
Sbjct: 260 YNNQHGGGYSRGYRNNNGGNNNNRQFRQFNNINNGNNNGFSQPLVNNNPQFIGQQPPQP 318
Score = 123 (48.4 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 97 RVNKASQDKKSLDVGAN-LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRG 155
+VN AS + +V L++GNL E+ + + FS G V KI+ D N G
Sbjct: 63 QVNAASAKEGGREVSNKILYVGNLPKSASEETIQELFSVGGNPVKTIKILNDK---NKAG 119
Query: 156 FG--FISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 191
F FI YD+ E +D A+ +NG+ + + +I V++A++
Sbjct: 120 FNYAFIEYDTNEVADMALNTLNGRLVDDVEIKVNWAFQ 157
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 234 (87.4 bits), Expect = 9.5e-19, P = 9.5e-19
Identities = 58/182 (31%), Positives = 103/182 (56%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S ++ ++ NLD + + L++ F G +++ V D N +GY FV F ++E
Sbjct: 21 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQE 78
Query: 78 DADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYD 130
A+ AI+ +N + L + + V + S+ ++ ++GA N++I N +VD++ L +
Sbjct: 79 AANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRE 138
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS FG ++ K+MRD +G S+GFGF+SY+ E ++ A+E MNG+ + + I V A
Sbjct: 139 LFSQFGKTLS-VKVMRDC-SGKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQ 196
Query: 191 KK 192
KK
Sbjct: 197 KK 198
Score = 231 (86.4 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 62/194 (31%), Positives = 104/194 (53%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ + Y+ N +V +E L ELF Q G ++V V +D + +G+GFV + ED
Sbjct: 114 AKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHED 172
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A+ A++ +N ++ GK I V +A Q++ S G NL+I NLD
Sbjct: 173 ANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 232
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + +
Sbjct: 233 TIDDEKLRKEFSPFGSI-TSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 289
Query: 182 RQITVSYAYKKDTK 195
+ + V+ A +K+ +
Sbjct: 290 KPLYVALAQRKEER 303
Score = 191 (72.3 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 45/114 (39%), Positives = 72/114 (63%)
Query: 86 LNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
+N + GKPIR+ + +D G N+FI NLD +D K LYDTFSAFG I++ K+
Sbjct: 1 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSC-KV 59
Query: 145 MRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGE 197
+ D + G S+G+ F+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 60 VCD-ENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 111
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 63/179 (35%), Positives = 95/179 (53%)
Query: 17 HSAERNQD---ATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVE 72
H AE +D T + N PQ +T+E L LF G V + + +D+V GYGFV
Sbjct: 8 HMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 67
Query: 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTF 132
+ + +DA+ AI LN ++L K I+V+ A + + ANL+I L + +K + D F
Sbjct: 68 YVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMF 126
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 189
S FG I+ N +++ D TG SRG FI +D ++ AI + NG + ITV +A
Sbjct: 127 SRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+FI NL D DE +L+ F FG VTN K++RD +T +GFGF++ ++E + AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L ++ + VS+ K K
Sbjct: 305 LNGYRLGDKILQVSFKTNKSHK 326
Score = 116 (45.9 bits), Expect = 0.00024, P = 0.00024
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL E +LW++F G V NV V +D TN +G+GFV + E+A AI LN
Sbjct: 247 FIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLN 306
Query: 88 MIKLYGKPIRVN-KASQDKK 106
+L K ++V+ K ++ K
Sbjct: 307 GYRLGDKILQVSFKTNKSHK 326
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 63/179 (35%), Positives = 95/179 (53%)
Query: 17 HSAERNQD---ATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVE 72
H AE +D T + N PQ +T+E L LF G V + + +D+V GYGFV
Sbjct: 8 HMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 67
Query: 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTF 132
+ + +DA+ AI LN ++L K I+V+ A + + ANL+I L + +K + D F
Sbjct: 68 YVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMF 126
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 189
S FG I+ N +++ D TG SRG FI +D ++ AI + NG + ITV +A
Sbjct: 127 SRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+FI NL D DE +L+ F FG VTN K++RD +T +GFGF++ ++E + AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L ++ + VS+ K K
Sbjct: 305 LNGYRLGDKILQVSFKTNKSHK 326
Score = 116 (45.9 bits), Expect = 0.00024, P = 0.00024
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL E +LW++F G V NV V +D TN +G+GFV + E+A AI LN
Sbjct: 247 FIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLN 306
Query: 88 MIKLYGKPIRVN-KASQDKK 106
+L K ++V+ K ++ K
Sbjct: 307 GYRLGDKILQVSFKTNKSHK 326
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 214 (80.4 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 59/196 (30%), Positives = 102/196 (52%)
Query: 5 IAPGVGANLLG-QHSAERNQDATA-----YVGNLDPQVTEELLWELFVQAGPVVNVYVPK 58
+ G G LL Q A + Q A A YVG++ ++ E+ + + F GP+ ++ +
Sbjct: 104 VTMGFGKPLLPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSW 163
Query: 59 DRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ--------DKKSLDV 110
D VT H+G+ FVE+ E A A++ +N + L G+ I+V + S D+ + +
Sbjct: 164 DSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEA 223
Query: 111 GA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 168
A +++ ++ D+ + + F AFG I + + RDP TG +G+GFI Y+ ++S
Sbjct: 224 RAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSCTLARDPTTGKHKGYGFIEYEKAQSSQ 282
Query: 169 AAIEAMN-----GQYL 179
A+ +MN GQYL
Sbjct: 283 DAVSSMNLFDLGGQYL 298
Score = 112 (44.5 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 8 GVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQG 67
G ++ Q + E YV ++ ++++ + +F G + + + +D T H+G
Sbjct: 210 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKG 269
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
YGF+E+ + + A+ +N+ L G+ +RV KA
Sbjct: 270 YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 303
Score = 49 (22.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 158 FISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
F+ + + AI+A+NG++ R++ V+ Y ++
Sbjct: 517 FVEFSIASETHKAIQALNGRWFAGRKV-VAEVYDQE 551
Score = 41 (19.5 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 228 PSLQNAPQANGTVGGPVPPRP 248
P A QA G + G P RP
Sbjct: 369 PQAVMAAQAPGVITGVTPARP 389
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 62/179 (34%), Positives = 95/179 (53%)
Query: 17 HSAERNQD---ATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVE 72
H AE +D T + N PQ +T+E L LF G + + + +D+V GYGFV
Sbjct: 8 HMAEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVN 67
Query: 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTF 132
+ + +DA+ AI LN ++L K I+V+ A + + ANL+I L + +K + D F
Sbjct: 68 YVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMF 126
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 189
S FG I+ N +++ D TG SRG FI +D ++ AI + NG + ITV +A
Sbjct: 127 SPFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 154 (59.3 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+FI NL D DE +L+ F FG VTN K++RD +T +GFGF++ ++E + AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIAS 304
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L ++ + VS+ K K
Sbjct: 305 LNGYRLGDKILQVSFKTNKSHK 326
Score = 118 (46.6 bits), Expect = 0.00015, P = 0.00015
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL E +LW++F G V NV V +D TN +G+GFV + E+A AI LN
Sbjct: 247 FIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASLN 306
Query: 88 MIKLYGKPIRVN-KASQDKK 106
+L K ++V+ K ++ K
Sbjct: 307 GYRLGDKILQVSFKTNKSHK 326
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 62/179 (34%), Positives = 96/179 (53%)
Query: 17 HSAERNQD---ATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVE 72
H AE +D T + N PQ +T++ L LF G V + + +D+V GYGFV
Sbjct: 8 HMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 67
Query: 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTF 132
+ + +DA+ AI LN ++L K I+V+ A + + ANL+I L ++ +K + D F
Sbjct: 68 YVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRNMTQKDVEDMF 126
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 189
S FG I+ N +++ D TG SRG FI +D ++ AI + NG + ITV +A
Sbjct: 127 SRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+FI NL D DE +L+ F FG VTN K++RD +T +GFGF++ ++E + AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L ++ + VS+ K K
Sbjct: 305 LNGYRLGDKILQVSFKTNKSHK 326
Score = 116 (45.9 bits), Expect = 0.00024, P = 0.00024
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL E +LW++F G V NV V +D TN +G+GFV + E+A AI LN
Sbjct: 247 FIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLN 306
Query: 88 MIKLYGKPIRVN-KASQDKK 106
+L K ++V+ K ++ K
Sbjct: 307 GYRLGDKILQVSFKTNKSHK 326
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 229 (85.7 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 68/215 (31%), Positives = 114/215 (53%)
Query: 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKV 85
T +VG+L + E L F V +V V +++ T +GYGFVEF S A+ A++
Sbjct: 120 TLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQS 179
Query: 86 LNMIKLYG--KPIRVNKAS---QDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFGVI 138
+ + + +P R+N AS +K++ + G +L F+G+L PDV + +L +TF+
Sbjct: 180 FSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPS 239
Query: 139 VTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK-- 195
V K++ D +TG S+G+GF+ + D E S A E MNG + +RQ+ V A K
Sbjct: 240 VKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE-MNGAFCSSRQMRVGIATPKRAAAY 298
Query: 196 GERHGTPAERILAAN----NPSSQKSRPHTLFASG 226
G+++G+ A + + + S +S T+F G
Sbjct: 299 GQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGG 333
Score = 114 (45.2 bits), Expect = 0.00070, P = 0.00070
Identities = 32/83 (38%), Positives = 46/83 (55%)
Query: 5 IAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNL 64
+A G G N G S + ++T +VG LD VTEE L + F G VV+V +P +
Sbjct: 309 LAGGHGGN--GSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKIP------V 360
Query: 65 HQGYGFVEFRSEEDADYAIKVLN 87
+G GFV+F + + A+ AI LN
Sbjct: 361 GKGCGFVQFANRQSAEEAIGNLN 383
Score = 100 (40.3 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVN-VYVPKDRVTNLHQGYGFVEFR 74
+ ++E D + +VG+L P V++ +L E F P V V D T +GYGFV F
Sbjct: 204 KRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFG 263
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKAS 102
E + A+ +N + +RV A+
Sbjct: 264 DENERSRAMTEMNGAFCSSRQMRVGIAT 291
Score = 92 (37.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
+ +F+G LD DV E+ L FS FG +V+ KI P G +G GF+ + + ++++ AI
Sbjct: 327 STIFVGGLDADVTEEDLMQPFSDFGEVVS-VKI---P-VG--KGCGFVQFANRQSAEEAI 379
Query: 172 EAMNGQYLCNRQITVSY 188
+NG + + +S+
Sbjct: 380 GNLNGTVIGKNTVRLSW 396
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 44/108 (40%), Positives = 66/108 (61%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDT 131
+N + GKP+R+ + +D G N+FI NLD +D K LYDT
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDT 118
Score = 117 (46.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/89 (26%), Positives = 52/89 (58%)
Query: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171
A+L++G+L PDV E +LY+ FS G I++ ++ RD T S G+ ++++ ++ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSI-RVCRDMITRRSLGYAYVNFQQPADAERAL 69
Query: 172 EAMNGQYLCNRQITVSYAYKKDTKGERHG 200
+ MN + + + + ++ ++D + G
Sbjct: 70 DTMNFDVIKGKPVRIMWS-QRDPSLRKSG 97
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 62/179 (34%), Positives = 95/179 (53%)
Query: 17 HSAERNQD---ATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVE 72
H AE +D T + N PQ +T++ L LF G V + + +D+V GYGFV
Sbjct: 16 HMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 75
Query: 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTF 132
+ + +DA+ AI LN ++L K I+V+ A + + ANL+I L + +K + D F
Sbjct: 76 YVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMF 134
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 189
S FG I+ N +++ D TG SRG FI +D ++ AI + NG + ITV +A
Sbjct: 135 SRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 192
Score = 152 (58.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+FI NL D DE +L+ F FG VTN K++RD +T +GFGF++ ++E + AI +
Sbjct: 254 IFIYNLGQDADEGILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 312
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L ++ + VS+ K K
Sbjct: 313 LNGYRLGDKILQVSFKTNKSHK 334
Score = 116 (45.9 bits), Expect = 0.00026, P = 0.00026
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL E +LW++F G V NV V +D TN +G+GFV + E+A AI LN
Sbjct: 255 FIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLN 314
Query: 88 MIKLYGKPIRVN-KASQDKK 106
+L K ++V+ K ++ K
Sbjct: 315 GYRLGDKILQVSFKTNKSHK 334
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 63/200 (31%), Positives = 101/200 (50%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A + Y+ N + +E L +LF GP ++V V D + +G+GFV F ED
Sbjct: 57 ARAKEFTNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDE-SGKSKGFGFVSFERHED 112
Query: 79 ADYAIKVLNMIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDP 121
A A+ +N +L GK I V +A QD+ + G NL++ NLD
Sbjct: 113 AQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 172
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ +
Sbjct: 173 GIDDERLRKEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 229
Query: 182 RQITVSYAYKKDTKGERHGT 201
+ + V+ A +K+ + + H T
Sbjct: 230 KPLYVALAQRKEER-QAHLT 248
Score = 191 (72.3 bits), Expect = 8.9e-14, P = 8.9e-14
Identities = 47/137 (34%), Positives = 80/137 (58%)
Query: 63 NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLF 115
N +GYGFV F ++E A+ AI+ +N + L + + V + S+ ++ ++GA N++
Sbjct: 7 NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVY 66
Query: 116 IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175
I N D+D++ L D F + K+M D ++G S+GFGF+S++ E + A++ MN
Sbjct: 67 IKNFGEDMDDERLKDLFGP----ALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMN 121
Query: 176 GQYLCNRQITVSYAYKK 192
G+ L +QI V A KK
Sbjct: 122 GKELNGKQIYVGRAQKK 138
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 224 (83.9 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 61/174 (35%), Positives = 91/174 (52%)
Query: 26 TAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
T + N PQ +T+E LF G + + + +D++T GYGFV + DAD AI
Sbjct: 38 TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAIN 97
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
LN +KL K I+V+ A S+ ANL++ L + +K + FS +G I+T+ +I
Sbjct: 98 TLNGLKLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMSQKDMEQLFSQYGRIITS-RI 155
Query: 145 MRDPDT-GNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAYKKDTK 195
+ D T G SRG GFI +D ++ AI+ +NGQ ITV +A K
Sbjct: 156 LVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPITVKFANNPSQK 209
Score = 156 (60.0 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL P+ DE +L+ F FG VTN K++RD T +GFGF++ +++ + AI +
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGA-VTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIAS 336
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 337 LNGYRLGDRVLQVSFKTSKQHK 358
Score = 134 (52.2 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 36/99 (36%), Positives = 53/99 (53%)
Query: 10 GANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYG 69
G NL G A +V NL P+ E +LW+LF G V NV V +D TN +G+G
Sbjct: 265 GVNLTGPTGA----GWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFG 320
Query: 70 FVEFRSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKS 107
FV + ++A AI LN +L + ++V+ K S+ K+
Sbjct: 321 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSKQHKA 359
Score = 105 (42.0 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVT-NLHQGYGFVEFRSEEDADY 81
+DA YV L ++++ + +LF Q G ++ + D+VT + +G GF+ F +A+
Sbjct: 122 RDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKRNEAEE 181
Query: 82 AIKVLNMIKLYG--KPIRVNKAS 102
AIK LN K G +PI V A+
Sbjct: 182 AIKGLNGQKPLGAAEPITVKFAN 204
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 216 (81.1 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 64/199 (32%), Positives = 104/199 (52%)
Query: 15 GQHSAE--RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVE 72
G HS RN ++G++ TE+ + LF + G VV V + KDR T QG FV+
Sbjct: 110 GDHSDHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVK 169
Query: 73 FRSEEDADYAIKVL-NMIKLYGK--PIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLL 128
+ + E+A+ AI+ L N L G PI+V A +++ + LF+ +L+ K +
Sbjct: 170 YATSEEAERAIRALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEI 229
Query: 129 YDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL---CNRQIT 185
+ F+ +G V + IM+D SRG GF+ + S E + AA+ A++G Y+ C + +
Sbjct: 230 EEIFAPYGH-VEDVYIMKD-GMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLI 287
Query: 186 VSYAY-KKDTKGERHGTPA 203
+ +A K+ GE G PA
Sbjct: 288 IRFADPKRPRPGESRGGPA 306
Score = 40 (19.1 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 211 NPSSQKSRPHTL--FASGPPSLQNAPQANGTVG-GPVPPRPYA-NGAAS 255
+PSS +S PH F S P T P+ ++ NG+ S
Sbjct: 342 HPSSPRSAPHQFNNFGSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLS 390
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 216 (81.1 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 64/199 (32%), Positives = 104/199 (52%)
Query: 15 GQHSAE--RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVE 72
G HS RN ++G++ TE+ + LF + G VV V + KDR T QG FV+
Sbjct: 110 GDHSDHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVK 169
Query: 73 FRSEEDADYAIKVL-NMIKLYGK--PIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLL 128
+ + E+A+ AI+ L N L G PI+V A +++ + LF+ +L+ K +
Sbjct: 170 YATSEEAERAIRALHNQYTLPGAMGPIQVRYADGERERHGAIEHKLFVASLNKQATAKEI 229
Query: 129 YDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL---CNRQIT 185
+ F+ +G V + IM+D SRG GF+ + S E + AA+ A++G Y+ C + +
Sbjct: 230 EEIFAPYGH-VEDVYIMKD-GMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQPLI 287
Query: 186 VSYAY-KKDTKGERHGTPA 203
+ +A K+ GE G PA
Sbjct: 288 IRFADPKRPRPGESRGGPA 306
Score = 40 (19.1 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 211 NPSSQKSRPHTL--FASGPPSLQNAPQANGTVG-GPVPPRPYA-NGAAS 255
+PSS +S PH F S P T P+ ++ NG+ S
Sbjct: 342 HPSSPRSAPHQFNNFGSDNPMAPKGSTVTSTTDTATFRPQMFSGNGSLS 390
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 224 (83.9 bits), Expect = 3.4e-18, P = 3.4e-18
Identities = 62/182 (34%), Positives = 97/182 (53%)
Query: 19 AERNQDA-TAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQ-GYGFVEFRS 75
+ +D+ T + N PQ +T+E L LF G + + + +D++T GYGFV +
Sbjct: 58 SNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYID 117
Query: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
+DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K L FS +
Sbjct: 118 PKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQKELEQLFSQY 176
Query: 136 GVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYKKD 193
G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ ITV +A
Sbjct: 177 GRIITS-RILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPS 235
Query: 194 TK 195
K
Sbjct: 236 QK 237
Score = 160 (61.4 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG VTN K++RD +T +GFGF++ +++ + AI +
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 366
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 367 LNGYRLGDRVLQVSFKTSKTHK 388
Score = 124 (48.7 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW++F G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 309 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 368
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K S+ K+
Sbjct: 369 GYRLGDRVLQVSFKTSKTHKA 389
Score = 117 (46.2 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 30/89 (33%), Positives = 49/89 (55%)
Query: 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYA 82
+DA YV L +T++ L +LF Q G ++ + D+VT + +G GF+ F +A+ A
Sbjct: 151 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 210
Query: 83 IKVLNMIKLYG--KPIRVNKASQDKKSLD 109
IK LN K G +PI V A+ + ++
Sbjct: 211 IKGLNGQKPPGATEPITVKFANNPSQKVN 239
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 62/179 (34%), Positives = 94/179 (52%)
Query: 17 HSAERNQD---ATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVE 72
H AE +D T + N PQ +T++ L LF G V + + +D+V GYGFV
Sbjct: 8 HMAEDCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVN 67
Query: 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTF 132
+ + +DA+ AI LN ++L K I+V+ A + + ANL+I L + +K + D F
Sbjct: 68 YVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRSMTQKDVEDMF 126
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 189
S FG I+ N +++ D TG SRG FI +D ++ AI NG + ITV +A
Sbjct: 127 SRFGRII-NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPITVKFA 184
Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+FI NL D DE +L+ F FG VTN K++RD +T +GFGF++ ++E + AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L ++ + VS+ K K
Sbjct: 305 LNGYRLGDKILQVSFKTNKSHK 326
Score = 116 (45.9 bits), Expect = 0.00024, P = 0.00024
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL E +LW++F G V NV V +D TN +G+GFV + E+A AI LN
Sbjct: 247 FIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLN 306
Query: 88 MIKLYGKPIRVN-KASQDKK 106
+L K ++V+ K ++ K
Sbjct: 307 GYRLGDKILQVSFKTNKSHK 326
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 62/185 (33%), Positives = 97/185 (52%)
Query: 11 ANLLGQHSAERNQD---ATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQ 66
+N G H + +D T + N PQ +T++ L LF G V + + +D+V
Sbjct: 2 SNGYGDHMDDVCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL 61
Query: 67 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEK 126
GYGFV + + +DA+ AI LN ++L K I+V+ A +S+ ANL+I L + +K
Sbjct: 62 GYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPSSESIK-DANLYISGLPRTMTQK 120
Query: 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQI 184
+ D F FG I+ N +++ D TG SRG FI +D ++ AI + NG + I
Sbjct: 121 DVEDMFLPFGRII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPI 179
Query: 185 TVSYA 189
TV +A
Sbjct: 180 TVKFA 184
Score = 150 (57.9 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 37/98 (37%), Positives = 55/98 (56%)
Query: 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 157
VN AS S G +FI NL D DE +L+ F FG VTN K++RD +T +GFG
Sbjct: 234 VNVAS----SASSGWCIFIYNLGQDADEGILWQMFGPFGA-VTNVKVIRDFNTNKCKGFG 288
Query: 158 FISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
F++ ++E + AI ++NG L ++ + V + K K
Sbjct: 289 FVTMTNYEEAAMAIASLNGYRLGDKTLQVFFKTSKSHK 326
Score = 117 (46.2 bits), Expect = 0.00019, P = 0.00019
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL E +LW++F G V NV V +D TN +G+GFV + E+A AI LN
Sbjct: 247 FIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLN 306
Query: 88 MIKLYGKPIRVN-KASQDKK 106
+L K ++V K S+ K
Sbjct: 307 GYRLGDKTLQVFFKTSKSHK 326
>MGI|MGI:1914260 [details] [associations]
symbol:Rbm7 "RNA binding motif protein 7" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1914260 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
CTD:10179 eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN EMBL:AF458961 EMBL:AK005200
EMBL:AK006755 EMBL:AK008645 EMBL:AK151056 EMBL:BC054774
IPI:IPI00133061 RefSeq:NP_659197.2 UniGene:Mm.76911
ProteinModelPortal:Q9CQT2 SMR:Q9CQT2 STRING:Q9CQT2
PhosphoSite:Q9CQT2 PaxDb:Q9CQT2 PRIDE:Q9CQT2
Ensembl:ENSMUST00000170000 GeneID:67010 KEGG:mmu:67010
InParanoid:Q9CQT2 NextBio:323298 Bgee:Q9CQT2 CleanEx:MM_RBM7
Genevestigator:Q9CQT2 GermOnline:ENSMUSG00000042396 Uniprot:Q9CQT2
Length = 265
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 49/112 (43%), Positives = 70/112 (62%)
Query: 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEF 73
+G +AE D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+ L Q + FV F
Sbjct: 1 MGAAAAEA--DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQ-FAFVNF 57
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 121
+ E YA+ +LN IKL+G+PI++ ++ S D + +GNL P
Sbjct: 58 KHEVSVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQDASVSYPQHHVGNLSP 109
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 58/167 (34%), Positives = 90/167 (53%)
Query: 26 TAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
T + N PQ +T++ L LF G V + + +D+V GYGFV + + +DA+ AI
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
LN ++L K I+V+ A + + ANL+I L + +K + D FS FG I+ N ++
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII-NSRV 137
Query: 145 MRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 189
+ D TG SRG FI +D ++ AI + NG + ITV +A
Sbjct: 138 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
Score = 152 (58.6 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+FI NL D DE +L+ F FG VTN K++RD +T +GFGF++ ++E + AI +
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 304
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L ++ + VS+ K K
Sbjct: 305 LNGYRLGDKILQVSFKTNKSHK 326
Score = 116 (45.9 bits), Expect = 0.00024, P = 0.00024
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL E +LW++F G V NV V +D TN +G+GFV + E+A AI LN
Sbjct: 247 FIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLN 306
Query: 88 MIKLYGKPIRVN-KASQDKK 106
+L K ++V+ K ++ K
Sbjct: 307 GYRLGDKILQVSFKTNKSHK 326
Score = 105 (42.0 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 28/95 (29%), Positives = 50/95 (52%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S+E +DA Y+ L +T++ + ++F + G ++N V D+ T L +G F+ F
Sbjct: 99 SSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRS 158
Query: 78 DADYAIKVLNMIKLYG--KPIRVNKASQDKKSLDV 110
+A+ AI N K G +PI V A+ ++ +V
Sbjct: 159 EAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNV 193
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 224 (83.9 bits), Expect = 6.9e-18, P = 6.9e-18
Identities = 69/228 (30%), Positives = 112/228 (49%)
Query: 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYA 82
Q T ++G L+P VTE + +++ G V V + ++R T ++ GY FVEF S +A A
Sbjct: 91 QKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA 150
Query: 83 IKVLNM-IKLYGKPIRVNKASQD---KKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFG 136
+ + N I ++N AS +KS+ + ++F+G+L P+V+E +Y F++
Sbjct: 151 MSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRY 210
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKG 196
+ KIM DP T SRG+GF+ + +A+ M GQ +R I V A K
Sbjct: 211 NSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA---TPKS 267
Query: 197 ERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTV--GG 242
+ H ++ + P P +++ P Q A AN TV GG
Sbjct: 268 KAHVFSPVNVVPVSMP------PVGFYSAAQPVPQFADTANSTVFVGG 309
Score = 106 (42.4 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 28/95 (29%), Positives = 45/95 (47%)
Query: 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQA-GPVVNVYVPKDRVTNLHQGYGFVE 72
L + S + + + +VG+L P V E ++ LF + + D TN+ +GYGFV
Sbjct: 175 LREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVR 234
Query: 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS 107
F E D A+ + +PIRV A+ K+
Sbjct: 235 FTDENDQKSALAEMQGQICGDRPIRVGLATPKSKA 269
Score = 97 (39.2 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 47/176 (26%), Positives = 75/176 (42%)
Query: 86 LNMIKLYGKPIRVNKASQDKKSLDVGAN--LFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N++ + P+ A+Q AN +F+G L V E+ L F FG IV
Sbjct: 275 VNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIV---- 330
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPA 203
++ P +G GF+ + + ++++ AI + G L N +I +S+ G A
Sbjct: 331 YVKIPP---GKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSW-------GRNQNPIA 380
Query: 204 ERILAANNPSSQKSRPHT-LFASGPPSLQNAPQANGTVGGPVPPRPYANGAASGPI 258
L + SQ + P T LF P++ PQA + V P P A PI
Sbjct: 381 APALNYQSQVSQTTIPATSLF----PAMSLPPQAQFSPYPAVAPSPLALQTRGAPI 432
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 51/137 (37%), Positives = 84/137 (61%)
Query: 63 NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK-ASQDKKSLDVGA------NLF 115
N +GY FV F ++E AD AI+ +N + L + + V + S+ ++ ++GA N++
Sbjct: 48 NGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVY 107
Query: 116 IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175
I N +VD++ L + FS FG ++ K+MRDP+ G S+GFGF+SY+ E ++ A+E MN
Sbjct: 108 IKNFGEEVDDESLKELFSQFGKTLS-VKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMN 165
Query: 176 GQYLCNRQITVSYAYKK 192
G+ + + I V A KK
Sbjct: 166 GKEISGKIIFVGRAQKK 182
Score = 119 (46.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ + Y+ N +V +E L ELF Q G ++V V +D +G+GFV + ED
Sbjct: 98 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKHED 156
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQ 103
A+ A++ +N ++ GK I V +A +
Sbjct: 157 ANKAVEEMNGKEISGKIIFVGRAQK 181
>RGD|1308017 [details] [associations]
symbol:Rbm7 "RNA binding motif protein 7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1308017 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 OMA:DRHYSRE IPI:IPI00215147
Ensembl:ENSRNOT00000007736 UCSC:RGD:1308017 ArrayExpress:F1M8F0
Uniprot:F1M8F0
Length = 265
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 49/112 (43%), Positives = 70/112 (62%)
Query: 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEF 73
+G +AE D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+ L Q + FV F
Sbjct: 1 MGAAAAEA--DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQ-FAFVNF 57
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 121
+ E YA+ +LN IKL+G+PI++ ++ S D + +GNL P
Sbjct: 58 KHEVSVPYAMNLLNGIKLFGRPIKIQFRSGSSHLSQDASTSYPQHHMGNLSP 109
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 218 (81.8 bits), Expect = 1.0e-17, P = 1.0e-17
Identities = 58/167 (34%), Positives = 90/167 (53%)
Query: 26 TAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
T + N PQ +T++ L LF G V + + +D+V GYGFV + + +DA+ AI
Sbjct: 47 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 106
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
LN ++L K I+V+ A + + ANL+I L + +K + D FS FG I+ N ++
Sbjct: 107 TLNGLRLQSKTIKVSYARPSSEVIK-DANLYISGLPRTMTQKDVEDMFSRFGRII-NSRV 164
Query: 145 MRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 189
+ D TG SRG FI +D ++ AI + NG + ITV +A
Sbjct: 165 LVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 211
Score = 152 (58.6 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+FI NL D DE +L+ F FG VTN K++RD +T +GFGF++ ++E + AI +
Sbjct: 273 IFIYNLGQDADEGILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIAS 331
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L ++ + VS+ K K
Sbjct: 332 LNGYRLGDKILQVSFKTNKSHK 353
Score = 116 (45.9 bits), Expect = 0.00028, P = 0.00028
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL E +LW++F G V NV V +D TN +G+GFV + E+A AI LN
Sbjct: 274 FIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLN 333
Query: 88 MIKLYGKPIRVN-KASQDKK 106
+L K ++V+ K ++ K
Sbjct: 334 GYRLGDKILQVSFKTNKSHK 353
Score = 105 (42.0 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 28/95 (29%), Positives = 50/95 (52%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S+E +DA Y+ L +T++ + ++F + G ++N V D+ T L +G F+ F
Sbjct: 126 SSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRS 185
Query: 78 DADYAIKVLNMIKLYG--KPIRVNKASQDKKSLDV 110
+A+ AI N K G +PI V A+ ++ +V
Sbjct: 186 EAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNV 220
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 221 (82.9 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 62/189 (32%), Positives = 101/189 (53%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGP--VVNVYVPKDRVTNLHQGYGFVEFRS 75
+A ++ T +VG+L + E L F +V+V V +++ L +GYGFVEF S
Sbjct: 94 NAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFES 153
Query: 76 EEDADYAIKVLNMIKLYG--KPIRVNKAS---QDKKSLDVGANL--FIGNLDPDVDEKLL 128
+ AD ++ N + +P R+N AS +K+ + G +L F+G+L PDV + LL
Sbjct: 154 HDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLL 213
Query: 129 YDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLCNRQITVS 187
++TFS V K++ D +TG S+G+GF+ + D E + A E MNG +R + +
Sbjct: 214 HETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE-MNGVKCSSRAMRIG 272
Query: 188 YAYKKDTKG 196
A + T G
Sbjct: 273 PATPRKTNG 281
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 220 (82.5 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 54/199 (27%), Positives = 106/199 (53%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Q + E + AT +VG L + +E L + F G V+ V +R T+ +GYG+V+F +
Sbjct: 159 QKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFEN 218
Query: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQD--------KKSLDVGAN----LFIGNLDPDV 123
+ A+ AI+ + ++ G+PI + ++ KK D + LF+GNL +
Sbjct: 219 KSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNA 278
Query: 124 DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ 183
D +++ F+ G +V+ +I P+T +GFG++ + + E + A++A+ G+Y+ NR
Sbjct: 279 DRDAIFELFAKHGEVVS-VRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRP 337
Query: 184 ITVSYAYKK-DTKGERHGT 201
+ + ++ + + G R G+
Sbjct: 338 VRLDFSSPRPNNDGGRGGS 356
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 223 (83.6 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 52/176 (29%), Positives = 90/176 (51%)
Query: 63 NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPD 122
N GYGFV+F +++A AI+ LN ++ KP++V+ A Q S ANL+I L+P
Sbjct: 149 NSSLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYA-QASSSQSTHANLYINRLEPH 207
Query: 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNR 182
V L + F +FG ++ + KI+ DPDTG SR GF+ + + A+ +MNG + +
Sbjct: 208 VTNANLKEVFGSFGDVI-DTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNGANIPFQ 266
Query: 183 QITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANG 238
+ + G +G I+ +N+ ++ + ++ F + + N NG
Sbjct: 267 STPIYVKFANQLSGNNNGNNNNNIINSNSNNNNNNNSNSNFNNNNGNFNNPFNFNG 322
Score = 100 (40.3 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 28/90 (31%), Positives = 42/90 (46%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Q S+ ++ A Y+ L+P VT L E+F G V++ + D T + GFV F
Sbjct: 188 QASSSQSTHANLYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQ 247
Query: 76 EEDADYAIKVLN--MIKLYGKPIRVNKASQ 103
+A A+ +N I PI V A+Q
Sbjct: 248 RREALKAVSSMNGANIPFQSTPIYVKFANQ 277
Score = 72 (30.4 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+ I NL ++DE LY F AFG I + +++ + G I+Y ++ AI
Sbjct: 454 IHISNLPNNIDETFLYKLF-AFGAI-SGVQLLNN-------GQAIITYLDYQTVQNAINT 504
Query: 174 MNGQYLCNRQITV 186
+NG+ + R + V
Sbjct: 505 LNGKIISGRSLKV 517
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 50/137 (36%), Positives = 77/137 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YVGNL VTE L+ +LF Q GP N + D N Y FVEF A A+ +N
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGN--DPYCFVEFHEHRHAAAALAAMN 59
Query: 88 MIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
K+ GK ++VN A S KK ++F+G+L P++ + + F+ FG I ++ ++
Sbjct: 60 GRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARV 118
Query: 145 MRDPDTGNSRGFGFISY 161
++D TG S+G+GF+S+
Sbjct: 119 VKDMATGKSKGYGFVSF 135
Score = 108 (43.1 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 115 FIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAM 174
++GNL DV E L+ FS G IM DT + + F+ + + AA+ AM
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIM---DTAGNDPYCFVEFHEHRHAAAALAAM 58
Query: 175 NGQYLCNRQITVSYA-----YKKDTKGERH 199
NG+ + +++ V++A KKDT H
Sbjct: 59 NGRKIMGKEVKVNWATTPSSQKKDTSNHFH 88
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 222 (83.2 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 63/217 (29%), Positives = 110/217 (50%)
Query: 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEF 73
LG H ++ + YVG+L P VTE+ L + F PVV+V++ ++ VT Y ++ F
Sbjct: 11 LGNHQ-HSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINF 69
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRVNKASQD---KKSLDVG-ANLFIGNLDPDVDEKLLY 129
S A A+ LN L GK +R+ + +D ++ G ANL++ NLD + L
Sbjct: 70 DSPFSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLE 129
Query: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189
F FG I++ K++ + G S+GFGF+ +D+ +++ +A A++G + +++ V+
Sbjct: 130 RMFCPFGSILSC-KVVEE--NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKF 186
Query: 190 YKKDTKGERHGTPAERILAANNPSSQKSRP--HTLFA 224
KD + G + N + HTLF+
Sbjct: 187 INKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFS 223
Score = 216 (81.1 bits), Expect = 7.0e-17, P = 7.0e-17
Identities = 57/178 (32%), Positives = 100/178 (56%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A YV NLD +T L +F G +++ V ++ + +G+GFV+F +E+ A A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQS--KGFGFVQFDTEQSAVSARS 169
Query: 85 VLNMIKLYGKPIRVNK-ASQDKKSLDVG----ANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
L+ +YGK + V K ++D+++ G N+++ NL V + L+ FS +G V
Sbjct: 170 ALHGSMVYGKKLFVAKFINKDERAAMAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGT-V 228
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
++ +MRD G SRGFGF+++ + E + A+E++ G L ++++ V A KKD + E
Sbjct: 229 SSVVVMRD-GMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERRE 285
Score = 195 (73.7 bits), Expect = 2.9e-13, P = 2.9e-13
Identities = 64/194 (32%), Positives = 103/194 (53%)
Query: 22 NQDAT-AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDAD 80
NQD+T YV NL VT++ L LF Q G V +V V +D + +G+GFV F + E+A
Sbjct: 198 NQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGR-SRGFGFVNFCNPENAK 256
Query: 81 YAIKVLNMIKLYGKPIRVNKA-SQDK-------KSLD--VG------ANLFIGNLDPDVD 124
A++ L ++L K + V KA +D+ K D + +NL++ NL ++
Sbjct: 257 KAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMN 316
Query: 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQI 184
E L + F +G IV+ K+M + G S+GFGF+ + + E S A +NG + + I
Sbjct: 317 ETRLREIFGCYGQIVS-AKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPI 374
Query: 185 TVSYAYKKDTKGER 198
V A +K+ + +R
Sbjct: 375 VVRVAERKEDRIKR 388
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 57/167 (34%), Positives = 90/167 (53%)
Query: 26 TAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
T + N PQ +T++ L LF G V + + +D+V GYGFV + + +DA+ AI
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
LN ++L K I+V+ A +++ ANL+I L + +K + D F FG I+ N ++
Sbjct: 80 TLNGLRLQSKTIKVSFARPSSETIK-DANLYISGLPRTMTQKDVEDMFLPFGHII-NSRV 137
Query: 145 MRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 189
+ D TG SRG FI +D ++ AI + NG + ITV +A
Sbjct: 138 LVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184
Score = 156 (60.0 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 38/98 (38%), Positives = 56/98 (57%)
Query: 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 157
VN AS S G +FI NL D DE +L+ F FG VTN K++RD +T +GFG
Sbjct: 234 VNVAS----SASSGWCIFIYNLGQDADEGILWQMFGPFGA-VTNVKVIRDFNTNKCKGFG 288
Query: 158 FISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
F++ ++E + AI ++NG L ++ + VS+ K K
Sbjct: 289 FVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKTSKSHK 326
Score = 121 (47.7 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL E +LW++F G V NV V +D TN +G+GFV + E+A AI LN
Sbjct: 247 FIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLN 306
Query: 88 MIKLYGKPIRVN-KASQDKK 106
+L K ++V+ K S+ K
Sbjct: 307 GYRLGDKTLQVSFKTSKSHK 326
Score = 108 (43.1 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S+E +DA Y+ L +T++ + ++F+ G ++N V D+ T L +G F+ F
Sbjct: 99 SSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRS 158
Query: 78 DADYAIKVLNMIKLYG--KPIRVNKASQDKKS 107
+A+ AI N K G +PI V A+ +S
Sbjct: 159 EAEEAIASFNGHKPPGSSEPITVKFAANPNQS 190
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 192 (72.6 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 49/131 (37%), Positives = 72/131 (54%)
Query: 67 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEK 126
GYGFV + +DA+ AI LN ++L K I+V+ A S+ ANL++ L + +K
Sbjct: 121 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIR-DANLYVSGLPKTMTQK 179
Query: 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQI 184
L FS +G I+T+ +I+ D TG SRG GFI +D ++ AI+ +NGQ I
Sbjct: 180 ELEQLFSQYGRIITS-RILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPI 238
Query: 185 TVSYAYKKDTK 195
TV +A K
Sbjct: 239 TVKFANNPSQK 249
Score = 160 (61.4 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 32/82 (39%), Positives = 51/82 (62%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL PD DE +L+ F FG VTN K++RD +T +GFGF++ +++ + AI +
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIAS 377
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L +R + VS+ K K
Sbjct: 378 LNGYRLGDRVLQVSFKTNKTHK 399
Score = 121 (47.7 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 29/81 (35%), Positives = 47/81 (58%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL P E +LW++F G V NV V +D TN +G+GFV + ++A AI LN
Sbjct: 320 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN 379
Query: 88 MIKLYGKPIRVN-KASQDKKS 107
+L + ++V+ K ++ K+
Sbjct: 380 GYRLGDRVLQVSFKTNKTHKA 400
Score = 116 (45.9 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYA 82
+DA YV L +T++ L +LF Q G ++ + D+VT + +G GF+ F +A+ A
Sbjct: 163 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEA 222
Query: 83 IKVLNMIKLYG--KPIRVNKAS 102
IK LN K G +PI V A+
Sbjct: 223 IKGLNGQKPPGATEPITVKFAN 244
Score = 46 (21.3 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 18 SAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVT 62
S T + N PQ +T+E L LF G + + + +D++T
Sbjct: 41 SGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKIT 86
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 221 (82.9 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 50/142 (35%), Positives = 81/142 (57%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++G L+ TE+ L E F + G V ++ + KD T +G+GF+ F D +K +
Sbjct: 162 FIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQH 221
Query: 88 MIKLYGKPIRVNKA-SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMR 146
++ GK I +A +D++ D +F+G + PDV K + FS +G I+ + ++M
Sbjct: 222 ILD--GKVIDPKRAIPRDEQ--DKTGKIFVGGIGPDVRPKEFEEFFSQWGTII-DAQLML 276
Query: 147 DPDTGNSRGFGFISYDSFEASD 168
D DTG SRGFGF++YDS +A D
Sbjct: 277 DKDTGQSRGFGFVTYDSADAVD 298
Score = 131 (51.2 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 97 RVNKASQDKKSLDVG---ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNS 153
+V + +++ D+ +FIG L+ D E L + F +G VT+ KIM+DP TG S
Sbjct: 141 QVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGKYGT-VTDLKIMKDPATGRS 199
Query: 154 RGFGFISYDSFEASDAAIEAMN 175
RGFGF+S++ + D ++ +
Sbjct: 200 RGFGFLSFEKPSSVDEVVKTQH 221
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 220 (82.5 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 56/168 (33%), Positives = 92/168 (54%)
Query: 12 NLLGQHSAERNQD---ATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQG 67
N GQ + D AT + N PQ +T+ L+ LF GP+ + +D T G
Sbjct: 76 NSAGQQQQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFG 135
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKL 127
YGFV++++E D++ AI+ LN + K ++V+ A +S+ NL++ NL ++++ +
Sbjct: 136 YGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIK-DTNLYVINLSRNINDDM 194
Query: 128 LYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175
L FS +G+IV I+RD TG RG F+ Y+ E + AI+A+N
Sbjct: 195 LDRIFSPYGLIVQR-NILRDKLTGRPRGVAFVRYNKREEAQEAIKALN 241
Score = 155 (59.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 39/95 (41%), Positives = 55/95 (57%)
Query: 99 NKASQDKKSLDV----GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 154
N A Q ++ V NL I L D+ ++ LY+ FS G I T KIMRD TG S
Sbjct: 76 NSAGQQQQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTC-KIMRDFKTGYSF 134
Query: 155 GFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189
G+GF+ Y + S+ AI+ +NG Y+ N+++ VSYA
Sbjct: 135 GYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYA 169
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 217 (81.4 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 52/191 (27%), Positives = 100/191 (52%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
+A + AT +VG L + + L F G V+ V +R T +GYG+V+F S+
Sbjct: 161 AASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKS 220
Query: 78 DADYAIKVLNMIKLYGKPIRVNKA--------SQDKKSLDVGAN-------LFIGNLDPD 122
A+ A++ + ++ G+PI ++ + S + ++ G + LFIGNL +
Sbjct: 221 AAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFN 280
Query: 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNR 182
+ L++ F +G +++ ++ PDT +GFG++ + S + + AA+EAMNG+Y+ R
Sbjct: 281 ANRDNLFNVFGEYGNVISC-RVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGR 339
Query: 183 QITVSYAYKKD 193
+ ++ +D
Sbjct: 340 PCRLDFSTPRD 350
Score = 134 (52.2 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 34/124 (27%), Positives = 61/124 (49%)
Query: 100 KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFI 159
K S+ S + A LF+G L ++D+ L F G ++ +++ + TG SRG+G++
Sbjct: 156 KKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVI-GARVIMERATGKSRGYGYV 214
Query: 160 SYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRP 219
++S A++ A+E M G+ + R I + + G+ H + + A SQ
Sbjct: 215 DFESKSAAEKALEEMQGKEIDGRPINLDMS-----TGKPHASKSNNDRAKQYGDSQSPPS 269
Query: 220 HTLF 223
TLF
Sbjct: 270 DTLF 273
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 217 (81.4 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 52/191 (27%), Positives = 100/191 (52%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
+A + AT +VG L + + L F G V+ V +R T +GYG+V+F S+
Sbjct: 161 AASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKS 220
Query: 78 DADYAIKVLNMIKLYGKPIRVNKA--------SQDKKSLDVGAN-------LFIGNLDPD 122
A+ A++ + ++ G+PI ++ + S + ++ G + LFIGNL +
Sbjct: 221 AAEKALEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFN 280
Query: 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNR 182
+ L++ F +G +++ ++ PDT +GFG++ + S + + AA+EAMNG+Y+ R
Sbjct: 281 ANRDNLFNVFGEYGNVISC-RVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGR 339
Query: 183 QITVSYAYKKD 193
+ ++ +D
Sbjct: 340 PCRLDFSTPRD 350
Score = 134 (52.2 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 34/124 (27%), Positives = 61/124 (49%)
Query: 100 KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFI 159
K S+ S + A LF+G L ++D+ L F G ++ +++ + TG SRG+G++
Sbjct: 156 KKSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVI-GARVIMERATGKSRGYGYV 214
Query: 160 SYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRP 219
++S A++ A+E M G+ + R I + + G+ H + + A SQ
Sbjct: 215 DFESKSAAEKALEEMQGKEIDGRPINLDMS-----TGKPHASKSNNDRAKQYGDSQSPPS 269
Query: 220 HTLF 223
TLF
Sbjct: 270 DTLF 273
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 213 (80.0 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 58/177 (32%), Positives = 95/177 (53%)
Query: 17 HSAERNQDA-TAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
H A+ D+ T + N PQ ++++ L LF G V + + +D+V GYGFV +
Sbjct: 24 HMADELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYL 83
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134
+ DA+ AI LN ++L K I+V+ A S+ ANL+I L + +K + + F
Sbjct: 84 NPNDAERAISTLNGLRLQSKTIKVSYARPSSDSIK-DANLYISGLPKTMTQKDVEEMFGR 142
Query: 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 189
+G I+ N +++ D +G SRG FI +D ++ AI+ +NGQ Q+TV +A
Sbjct: 143 YGRII-NSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKFA 198
Score = 150 (57.9 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+FI NL D DE +L+ F FG VTN K++RD +T +GFGF++ +E + AI +
Sbjct: 260 IFIYNLGQDADEGILWQMFGPFGA-VTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIAS 318
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L ++ + VS+ K K
Sbjct: 319 LNGYRLGDKILQVSFKTSKSHK 340
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL E +LW++F G V NV V +D TN +G+GFV E+A AI LN
Sbjct: 261 FIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASLN 320
Query: 88 MIKLYGKPIRVN-KASQDKK 106
+L K ++V+ K S+ K
Sbjct: 321 GYRLGDKILQVSFKTSKSHK 340
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 211 (79.3 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 57/194 (29%), Positives = 104/194 (53%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
Q + ++ YVGNL +T L ++F +AG VV+V + D+VT+ +G+GFV S
Sbjct: 107 QTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGS 166
Query: 76 EEDADYAIKVLNMIKLYGKPIRVN---------------KASQDKKS-LDVGANLFIGNL 119
E+A A+++ N ++ G+ ++VN K + +S +D ++ GNL
Sbjct: 167 IEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNL 226
Query: 120 DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 179
++ + L D F ++ K++ + +TG SRGFGFIS++S E +A+ MNG +
Sbjct: 227 GWNLTSQGLKDAFGDQPGVL-GAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEV 285
Query: 180 CNRQITVSYAYKKD 193
R + ++ A +++
Sbjct: 286 EGRALRLNLASERE 299
Score = 114 (45.2 bits), Expect = 0.00042, P = 0.00042
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Y GNL +T + L + F V+ V +R T +G+GF+ F S E+ A+ +N
Sbjct: 222 YAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMN 281
Query: 88 MIKLYGKPIRVNKASQDKK 106
+++ G+ +R+N AS+ +K
Sbjct: 282 GVEVEGRALRLNLASEREK 300
Score = 112 (44.5 bits), Expect = 0.00072, P = 0.00072
Identities = 33/127 (25%), Positives = 56/127 (44%)
Query: 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 157
V + Q ++ L++GNL + L F G +V + +I+ D T SRGFG
Sbjct: 102 VEEEKQTTQASGEEGRLYVGNLPYTITSSELSQIFGEAGTVV-DVQIVYDKVTDRSRGFG 160
Query: 158 FISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKS 217
F++ S E + A++ N + R + V++ + GE R +N S
Sbjct: 161 FVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFP-EVPRGGENE---VMRTKIRDNNRSYVD 216
Query: 218 RPHTLFA 224
PH ++A
Sbjct: 217 SPHKVYA 223
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 214 (80.4 bits), Expect = 4.7e-17, P = 4.7e-17
Identities = 64/200 (32%), Positives = 101/200 (50%)
Query: 6 APGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNL- 64
APG GA + Q E T ++G L+P + E + L+ Q G VNV + +D+ +
Sbjct: 48 APGEGAPAVAQQGNEGK--TTLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRS 105
Query: 65 HQGYGFVEFRSEEDADYAIKVLNMIKL--YGKPIRVNKAS----QDKKSLDVGA--NLFI 116
+ GY FV+F S A A+ LN + + ++N A+ D+ D G ++F+
Sbjct: 106 NAGYCFVDFASPAAAAKALS-LNGTPMPNTNRLFKLNWATGGGLADRSRDDRGPEYSIFV 164
Query: 117 GNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176
G+L P+V+E +L F + + KIM DP +G SRG+GF+ + A+ M G
Sbjct: 165 GDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQG 224
Query: 177 QYLCNRQITVSYAYKKDTKG 196
Y NR + +S A K+ KG
Sbjct: 225 VYCGNRPMRISTATPKN-KG 243
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 146 (56.5 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 32/79 (40%), Positives = 49/79 (62%)
Query: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
G +++GNL VD+ L FS G +V +++ D D+G S+GFGF++YDS + A
Sbjct: 203 GNRVYVGNLSWGVDDMALESLFSEQGKVV-EARVIYDRDSGRSKGFGFVTYDSSQEVQNA 261
Query: 171 IEAMNGQYLCNRQITVSYA 189
I++++G L RQI VS A
Sbjct: 262 IKSLDGADLDGRQIRVSEA 280
Score = 122 (48.0 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
Identities = 31/86 (36%), Positives = 43/86 (50%)
Query: 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
D +VGNL V L +LF AG V V V D++T +G+GFV S + + A
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAA 149
Query: 84 KVLNMIKLYGKPIRVNKASQDKKSLD 109
+ N +L G+P+RVN K D
Sbjct: 150 QQFNGYELDGRPLRVNAGPPPPKRED 175
Score = 119 (46.9 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 30/74 (40%), Positives = 42/74 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YVGNL V + L LF + G VV V DR + +G+GFV + S ++ AIK L+
Sbjct: 207 YVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLD 266
Query: 88 MIKLYGKPIRVNKA 101
L G+ IRV++A
Sbjct: 267 GADLDGRQIRVSEA 280
Score = 118 (46.6 bits), Expect = 0.00011, P = 0.00011
Identities = 30/87 (34%), Positives = 44/87 (50%)
Query: 101 ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFIS 160
A ++S LF+GNL +VD L F + G V +++ D TG SRGFGF++
Sbjct: 80 APPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGN-VEMVEVIYDKITGRSRGFGFVT 138
Query: 161 YDSFEASDAAIEAMNGQYLCNRQITVS 187
S +AA + NG L R + V+
Sbjct: 139 MSSVSEVEAAAQQFNGYELDGRPLRVN 165
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 216 (81.1 bits), Expect = 5.2e-17, P = 5.2e-17
Identities = 56/162 (34%), Positives = 83/162 (51%)
Query: 7 PGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQ 66
P AN SA ++G L TEE L F + G +V+ + KD T +
Sbjct: 145 PAPTANATSAESAG-GPSRKCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSR 203
Query: 67 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEK 126
G+GF+ F + D +K +++ GK I +A + VG +F+G +DP V E+
Sbjct: 204 GFGFLTFEDAKSVDALLKDRHVLD--GKLIDPKRAISKEDQEKVG-KIFVGGIDPMVTEE 260
Query: 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 168
+ FS FG I+ + ++M D DTG SRGFGF++YDS A D
Sbjct: 261 EFDNFFSQFGKII-DCQLMIDKDTGRSRGFGFVTYDSPAAVD 301
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
Identities = 47/113 (41%), Positives = 72/113 (63%)
Query: 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDT 131
F+ DA+ A+ +N + GKPIR+ + +D G N+FI NLD +D K LYDT
Sbjct: 3 FQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDT 62
Query: 132 FSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQI 184
FSAFG I++ K++ D + G S+G+ F+ +++ EA+D AIE MNG L +R++
Sbjct: 63 FSAFGNILSC-KVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 112
Score = 91 (37.1 bits), Expect = 0.00082, P = 0.00082
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S ++ ++ NLD + + L++ F G +++ V D N +GY FV F ++E
Sbjct: 36 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQE 93
Query: 78 DADYAIKVLNMIKLYGKPI 96
AD AI+ +N + L + +
Sbjct: 94 AADKAIEKMNGMLLNDRKV 112
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 57/176 (32%), Positives = 92/176 (52%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Y+GN+ VT E L +L + G V V V D+ + + +GF +S EDA+ ++ LN
Sbjct: 79 YIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLN 138
Query: 88 MIKLYGKPIRVNKA--------------SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFS 133
+ G+ I+VN S+D +D +++GNL V +++L + FS
Sbjct: 139 GNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFS 198
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189
G +V+ K+ R P T S GFGF+++ S E +AAI A+N L ++I V+ A
Sbjct: 199 EKGKVVS-AKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
Score = 158 (60.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 40/89 (44%), Positives = 51/89 (57%)
Query: 13 LLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVE 72
L + SA + YVGNL VT+E+L LF + G VV+ V + T+ G+GFV
Sbjct: 165 LQSEDSAFVDSPYKVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVT 224
Query: 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
F SEED + AI LN L G+ IRVNKA
Sbjct: 225 FSSEEDVEAAIVALNNSLLEGQKIRVNKA 253
>UNIPROTKB|F5GXV8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI00556348 ProteinModelPortal:F5GXV8 SMR:F5GXV8
Ensembl:ENST00000541475 ArrayExpress:F5GXV8 Bgee:F5GXV8
Uniprot:F5GXV8
Length = 149
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 48/112 (42%), Positives = 68/112 (60%)
Query: 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEF 73
+G +AE D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+ Q + FV F
Sbjct: 1 MGAAAAEA--DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNF 57
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 121
+ E YA+ +LN IKLYG+PI++ ++ DV + +GN P
Sbjct: 58 KHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSP 109
Score = 103 (41.3 bits), Expect = 0.00036, P = 0.00036
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
LF+GNL+ V E+LL++ F G ++ KI +D D G + F F+++ + A+
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVI-KVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNL 69
Query: 174 MNGQYLCNRQITVSY 188
+NG L R I + +
Sbjct: 70 LNGIKLYGRPIKIQF 84
>UNIPROTKB|Q3MHY8 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9913 "Bos
taurus" [GO:0007126 "meiosis" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007126 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00690000102191
EMBL:BC104518 IPI:IPI00690650 RefSeq:NP_001029659.1
UniGene:Bt.56272 ProteinModelPortal:Q3MHY8 SMR:Q3MHY8 PRIDE:Q3MHY8
Ensembl:ENSBTAT00000010804 GeneID:515307 KEGG:bta:515307 CTD:10179
eggNOG:NOG273605 HOGENOM:HOG000059553 HOVERGEN:HBG009324
InParanoid:Q3MHY8 KO:K13188 OMA:DRHYSRE OrthoDB:EOG4W0XDN
NextBio:20871760 Uniprot:Q3MHY8
Length = 262
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 48/112 (42%), Positives = 69/112 (61%)
Query: 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEF 73
+G +AE D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+ Q + FV F
Sbjct: 1 MGAAAAEA--DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNF 57
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 121
+ E YA+ +LN IKL+G+PI++ +A S +V + +GN P
Sbjct: 58 KHEVSVPYAMNLLNGIKLFGRPIKIQFRAGSSHASQEVSLSYPQHHVGNSSP 109
>UNIPROTKB|F5GY08 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01012450 ProteinModelPortal:F5GY08 SMR:F5GY08
Ensembl:ENST00000544582 ArrayExpress:F5GY08 Bgee:F5GY08
Uniprot:F5GY08
Length = 220
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 48/112 (42%), Positives = 68/112 (60%)
Query: 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEF 73
+G +AE D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+ Q + FV F
Sbjct: 1 MGAAAAEA--DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNF 57
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 121
+ E YA+ +LN IKLYG+PI++ ++ DV + +GN P
Sbjct: 58 KHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSP 109
>UNIPROTKB|J3KPD3 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471065 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:DRHYSRE UniGene:Hs.7527 HGNC:HGNC:9904 EMBL:AP002373
ProteinModelPortal:J3KPD3 Ensembl:ENST00000375490 Uniprot:J3KPD3
Length = 267
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 48/112 (42%), Positives = 68/112 (60%)
Query: 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEF 73
+G +AE D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+ Q + FV F
Sbjct: 1 MGAAAAEA--DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNF 57
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 121
+ E YA+ +LN IKLYG+PI++ ++ DV + +GN P
Sbjct: 58 KHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSP 109
>UNIPROTKB|Q9Y580 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007126 EMBL:CH471065 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 CTD:10179 eggNOG:NOG273605
HOGENOM:HOG000059553 HOVERGEN:HBG009324 KO:K13188 OrthoDB:EOG4W0XDN
EMBL:AF156098 EMBL:AK002015 EMBL:AK312619 EMBL:BC034381
IPI:IPI00001134 RefSeq:NP_057174.1 UniGene:Hs.7527
ProteinModelPortal:Q9Y580 SMR:Q9Y580 DIP:DIP-48833N IntAct:Q9Y580
MINT:MINT-1453692 STRING:Q9Y580 PhosphoSite:Q9Y580 DMDM:9978697
PRIDE:Q9Y580 DNASU:10179 Ensembl:ENST00000540163 GeneID:10179
KEGG:hsa:10179 UCSC:uc001pov.3 GeneCards:GC11P114305 HGNC:HGNC:9904
HPA:HPA013993 MIM:612413 neXtProt:NX_Q9Y580 PharmGKB:PA34269
PhylomeDB:Q9Y580 GenomeRNAi:10179 NextBio:38534 ArrayExpress:Q9Y580
Bgee:Q9Y580 CleanEx:HS_RBM7 Genevestigator:Q9Y580
GermOnline:ENSG00000076053 Uniprot:Q9Y580
Length = 266
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 48/112 (42%), Positives = 68/112 (60%)
Query: 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEF 73
+G +AE D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+ Q + FV F
Sbjct: 1 MGAAAAEA--DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNF 57
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 121
+ E YA+ +LN IKLYG+PI++ ++ DV + +GN P
Sbjct: 58 KHEVSVPYAMNLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSP 109
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 193 (73.0 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 58/178 (32%), Positives = 93/178 (52%)
Query: 24 DA-TAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNL--HQ------GYGFVEF 73
DA T + N PQ +++E L LF G V + + +D++ + H GYGFV +
Sbjct: 53 DAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNY 112
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFS 133
+ DA+ AI LN ++L K I+V+ A + ANL+I L + +K + D F+
Sbjct: 113 VNPSDAERAINTLNGLRLQSKTIKVSYARPSSDGIK-DANLYISGLPKTMTQKNVEDMFT 171
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 189
+G I+ N +I+ D +G SRG FI +D ++ AI+ +NG + ITV +A
Sbjct: 172 QYGRII-NSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKFA 228
Score = 153 (58.9 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 31/82 (37%), Positives = 50/82 (60%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+ NL D DE +L+ F FG VTN K++RD +T +GFGF++ ++E + AI +
Sbjct: 288 IFVYNLGQDADEGILWQMFGPFGA-VTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISS 346
Query: 174 MNGQYLCNRQITVSYAYKKDTK 195
+NG L ++ + VS+ K K
Sbjct: 347 LNGYRLGDKVLQVSFKSSKSHK 368
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL E +LW++F G V NV V +D T+ +G+GFV + E+A AI LN
Sbjct: 289 FVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSLN 348
Query: 88 MIKLYGKPIRVN-KASQDKK 106
+L K ++V+ K+S+ K
Sbjct: 349 GYRLGDKVLQVSFKSSKSHK 368
Score = 117 (46.2 bits), Expect = 7.1e-17, Sum P(2) = 7.1e-17
Identities = 28/92 (30%), Positives = 50/92 (54%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S++ +DA Y+ L +T++ + ++F Q G ++N + D+ + L +G F+ F
Sbjct: 143 SSDGIKDANLYISGLPKTMTQKNVEDMFTQYGRIINSRILVDQASGLSRGVAFIRFDKRS 202
Query: 78 DADYAIKVLNMIKLYG--KPIRVNKASQDKKS 107
+A+ AIK LN K G +PI V A+ +S
Sbjct: 203 EAEEAIKDLNGSKPSGASEPITVKFAANPNQS 234
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 213 (80.0 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 61/189 (32%), Positives = 101/189 (53%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGP--VVNVYVPKDRVTNLHQGYGFVEFRS 75
+A ++ T +VG+L + E L F A +V++ V +++ +GYGFVEF S
Sbjct: 96 NAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFES 155
Query: 76 EEDADYAIKVLNMIKLYG--KPIRVNKAS---QDKKSLDVGANL--FIGNLDPDVDEKLL 128
+ AD ++ N + +P R+N AS +K+ + G +L F+G+L PDV + LL
Sbjct: 156 HDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALL 215
Query: 129 YDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQYLCNRQITVS 187
++TFS V K++ D +TG S+G+GF+ + D E + A E MNG +R + +
Sbjct: 216 HETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE-MNGVKCSSRAMRIG 274
Query: 188 YAYKKDTKG 196
A + T G
Sbjct: 275 PATPRKTNG 283
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 208 (78.3 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 50/167 (29%), Positives = 91/167 (54%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N
Sbjct: 95 YVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 154
Query: 88 MIKLYGKPIRVNKASQ--------DKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGV 137
+ L G+ I+V + S D+ + + A +++ ++ D+ + + F AFG
Sbjct: 155 SVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 214
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 179
I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL
Sbjct: 215 I-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 260
Score = 112 (44.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 8 GVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQG 67
G ++ Q + E YV ++ ++++ + +F G + + + +D T H+G
Sbjct: 172 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKG 231
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
YGF+E+ + + A+ +N+ L G+ +RV KA
Sbjct: 232 YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 265
Score = 50 (22.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 158 FISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
F+ + + AI+A+NG++ R++ V+ Y ++
Sbjct: 479 FVEFSMASETHKAIQALNGRWFAGRKV-VAEVYDQE 513
Score = 41 (19.5 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 228 PSLQNAPQANGTVGGPVPPRP 248
P A QA G + G P RP
Sbjct: 331 PQAVMAAQAPGVITGVTPARP 351
>UNIPROTKB|E2QWQ0 [details] [associations]
symbol:RBM7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 CTD:10179 KO:K13188 OMA:DRHYSRE
EMBL:AAEX03003476 EMBL:AAEX03003477 RefSeq:XP_853905.2
Ensembl:ENSCAFT00000021445 GeneID:611169 KEGG:cfa:611169
Uniprot:E2QWQ0
Length = 262
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 48/109 (44%), Positives = 67/109 (61%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
+A D T +VGNL+ +VTEELL+ELF QAGPVV V +PKD+ Q + FV F+ E
Sbjct: 3 AAAEEADRTLFVGNLETKVTEELLFELFHQAGPVVKVKIPKDKDGKPKQ-FAFVNFKHEV 61
Query: 78 DADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANLF----IGNLDP 121
YA+ +LN IKL+G+PI++ ++ S DV L+ +GN P
Sbjct: 62 SVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQDVNL-LYPQHHLGNSSP 109
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 208 (78.3 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 50/167 (29%), Positives = 91/167 (54%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N
Sbjct: 103 YVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 162
Query: 88 MIKLYGKPIRVNKASQ--------DKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGV 137
+ L G+ I+V + S D+ + + A +++ ++ D+ + + F AFG
Sbjct: 163 SVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 222
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 179
I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL
Sbjct: 223 I-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 268
Score = 112 (44.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 8 GVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQG 67
G ++ Q + E YV ++ ++++ + +F G + + + +D T H+G
Sbjct: 180 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKG 239
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
YGF+E+ + + A+ +N+ L G+ +RV KA
Sbjct: 240 YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 49 (22.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 158 FISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
F+ + + AI+A+NG++ R++ V+ Y ++
Sbjct: 487 FVEFSVASETHKAIQALNGRWFAGRKV-VAEVYDQE 521
Score = 41 (19.5 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 228 PSLQNAPQANGTVGGPVPPRP 248
P A QA G + G P RP
Sbjct: 339 PQAVMAAQAPGVITGVTPARP 359
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 208 (78.3 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 50/167 (29%), Positives = 91/167 (54%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N
Sbjct: 103 YVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 162
Query: 88 MIKLYGKPIRVNKASQ--------DKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGV 137
+ L G+ I+V + S D+ + + A +++ ++ D+ + + F AFG
Sbjct: 163 SVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 222
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 179
I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL
Sbjct: 223 I-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 268
Score = 112 (44.5 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 8 GVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQG 67
G ++ Q + E YV ++ ++++ + +F G + + + +D T H+G
Sbjct: 180 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKG 239
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
YGF+E+ + + A+ +N+ L G+ +RV KA
Sbjct: 240 YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 273
Score = 43 (20.2 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 158 FISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
F+ + + AI+ +NG++ R++ V+ Y ++
Sbjct: 487 FVEFSVASETHKAIQDLNGRWFAGRKV-VAEVYDQE 521
Score = 41 (19.5 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 228 PSLQNAPQANGTVGGPVPPRP 248
P A QA G + G P RP
Sbjct: 339 PQAVMAAQAPGVITGVTPARP 359
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 208 (78.3 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 50/167 (29%), Positives = 91/167 (54%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N
Sbjct: 116 YVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 175
Query: 88 MIKLYGKPIRVNKASQ--------DKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGV 137
+ L G+ I+V + S D+ + + A +++ ++ D+ + + F AFG
Sbjct: 176 SVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 235
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 179
I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL
Sbjct: 236 I-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 281
Score = 112 (44.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 8 GVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQG 67
G ++ Q + E YV ++ ++++ + +F G + + + +D T H+G
Sbjct: 193 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKG 252
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
YGF+E+ + + A+ +N+ L G+ +RV KA
Sbjct: 253 YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 286
Score = 49 (22.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 158 FISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
F+ + + AI+A+NG++ R++ V+ Y ++
Sbjct: 500 FVEFSIASETHKAIQALNGRWFAGRKV-VAEVYDQE 534
Score = 41 (19.5 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 228 PSLQNAPQANGTVGGPVPPRP 248
P A QA G + G P RP
Sbjct: 352 PQAVMAAQAPGVITGVTPARP 372
>UNIPROTKB|I3L521 [details] [associations]
symbol:I3L521 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP002373
Ensembl:ENST00000544347 Uniprot:I3L521
Length = 148
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 45/102 (44%), Positives = 63/102 (61%)
Query: 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+ Q + FV F+ E YA+
Sbjct: 6 DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNFKHEVSVPYAM 64
Query: 84 KVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 121
+LN IKLYG+PI++ ++ DV + +GN P
Sbjct: 65 NLLNGIKLYGRPIKIQFRSGSSHAPQDVSLSYPQHHVGNSSP 106
Score = 103 (41.3 bits), Expect = 0.00032, P = 0.00032
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
LF+GNL+ V E+LL++ F G ++ KI +D D G + F F+++ + A+
Sbjct: 9 LFVGNLETKVTEELLFELFHQAGPVI-KVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNL 66
Query: 174 MNGQYLCNRQITVSY 188
+NG L R I + +
Sbjct: 67 LNGIKLYGRPIKIQF 81
>UNIPROTKB|F1SJV7 [details] [associations]
symbol:LOC100522453 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 KO:K13188 OMA:DRHYSRE EMBL:CU856090
RefSeq:XP_003129925.1 Ensembl:ENSSSCT00000032163 GeneID:100522453
KEGG:ssc:100522453 Uniprot:F1SJV7
Length = 265
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 47/112 (41%), Positives = 69/112 (61%)
Query: 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEF 73
+G +AE D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+ Q + FV F
Sbjct: 1 MGAAAAEA--DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNF 57
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRVN-KASQDKKSLDVGANL---FIGNLDP 121
+ E YA+ +LN IKL+G+PI++ ++ S +V + +GN P
Sbjct: 58 KHEVSVPYAMNLLNGIKLFGRPIKIQFRSGSSHASQEVSLSYPQHHVGNSSP 109
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 208 (78.3 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 50/167 (29%), Positives = 91/167 (54%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N
Sbjct: 132 YVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 191
Query: 88 MIKLYGKPIRVNKASQ--------DKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGV 137
+ L G+ I+V + S D+ + + A +++ ++ D+ + + F AFG
Sbjct: 192 SVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 251
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 179
I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL
Sbjct: 252 I-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 297
Score = 112 (44.5 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 8 GVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQG 67
G ++ Q + E YV ++ ++++ + +F G + + + +D T H+G
Sbjct: 209 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKG 268
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
YGF+E+ + + A+ +N+ L G+ +RV KA
Sbjct: 269 YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 302
Score = 49 (22.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 158 FISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
F+ + + AI+A+NG++ R++ V+ Y ++
Sbjct: 516 FVEFSIASETHKAIQALNGRWFAGRKV-VAEVYDQE 550
Score = 41 (19.5 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 228 PSLQNAPQANGTVGGPVPPRP 248
P A QA G + G P RP
Sbjct: 368 PQAVMAAQAPGVITGVTPARP 388
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 208 (78.3 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 50/167 (29%), Positives = 91/167 (54%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N
Sbjct: 137 YVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 196
Query: 88 MIKLYGKPIRVNKASQ--------DKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGV 137
+ L G+ I+V + S D+ + + A +++ ++ D+ + + F AFG
Sbjct: 197 SVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 256
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 179
I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL
Sbjct: 257 I-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302
Score = 112 (44.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 8 GVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQG 67
G ++ Q + E YV ++ ++++ + +F G + + + +D T H+G
Sbjct: 214 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKG 273
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
YGF+E+ + + A+ +N+ L G+ +RV KA
Sbjct: 274 YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
Score = 47 (21.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 158 FISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
F+ + + AI+A+NG++ R++ V+ Y ++
Sbjct: 521 FVEFSMASETHKAIQALNGRWFGGRKV-VAEVYDQE 555
Score = 41 (19.5 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 228 PSLQNAPQANGTVGGPVPPRP 248
P A QA G + G P RP
Sbjct: 373 PQAVMAAQAPGVITGVTPARP 393
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 208 (78.3 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 50/167 (29%), Positives = 91/167 (54%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N
Sbjct: 137 YVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 196
Query: 88 MIKLYGKPIRVNKASQ--------DKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGV 137
+ L G+ I+V + S D+ + + A +++ ++ D+ + + F AFG
Sbjct: 197 SVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 256
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 179
I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL
Sbjct: 257 I-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 302
Score = 112 (44.5 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 8 GVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQG 67
G ++ Q + E YV ++ ++++ + +F G + + + +D T H+G
Sbjct: 214 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKG 273
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
YGF+E+ + + A+ +N+ L G+ +RV KA
Sbjct: 274 YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 307
Score = 47 (21.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 158 FISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
F+ + + AI+A+NG++ R++ V+ Y ++
Sbjct: 521 FVEFSMASETHKAIQALNGRWFGGRKV-VAEVYDQE 555
Score = 41 (19.5 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 228 PSLQNAPQANGTVGGPVPPRP 248
P A QA G + G P RP
Sbjct: 373 PQAVMAAQAPGVITGVTPARP 393
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 43/85 (50%), Positives = 59/85 (69%)
Query: 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEF 73
+G +AE D T +VGNL+ +VTEELL+ELF QAGPV+ V +PKD+ Q + FV F
Sbjct: 1 MGAAAAEA--DRTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQ-FAFVNF 57
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRV 98
+ E YA+ +LN IKLYG+PI++
Sbjct: 58 KHEVSVPYAMNLLNGIKLYGRPIKI 82
Score = 103 (41.3 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
LF+GNL+ V E+LL++ F G ++ KI +D D G + F F+++ + A+
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVI-KVKIPKDKD-GKPKQFAFVNFKHEVSVPYAMNL 69
Query: 174 MNGQYLCNRQITVSY 188
+NG L R I + +
Sbjct: 70 LNGIKLYGRPIKIQF 84
>UNIPROTKB|G3MYJ0 [details] [associations]
symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
Length = 625
Score = 213 (80.0 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 59/186 (31%), Positives = 98/186 (52%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
G++S + T + NL TEE L E+F +A ++ VP+++ +GY F+EF
Sbjct: 391 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---THIKVPQNQ-NGKSKGYAFIEFA 446
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYD 130
S EDA A+ N ++ G+ IR+ + S + +S LF+ L D E+ L +
Sbjct: 447 SFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKE 505
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
+F G I +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A
Sbjct: 506 SFD--GSI--RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 561
Query: 191 KKDTKG 196
K G
Sbjct: 562 PKGEGG 567
Score = 126 (49.4 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 55/192 (28%), Positives = 94/192 (48%)
Query: 19 AERNQDA-TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
+++++DA T NL +VT++ L E+F A + V KD + +G ++EF++E
Sbjct: 308 SKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIR--LVSKDGKS---KGIAYIEFKTEA 362
Query: 78 DADYAI--KVLNMIKLYGKPIRVNKASQDKKSLDVGAN--LFIGNLDPDVDEKLLYDTFS 133
DA+ + K I G+ + K S G + L + NL E+ L + F
Sbjct: 363 DAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE 422
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
T+ K+ ++ + G S+G+ FI + SFE DA EA+N CN++ A + +
Sbjct: 423 K----ATHIKVPQNQN-GKSKGYAFIEFASFE--DAK-EALNS---CNKREIEGRAIRLE 471
Query: 194 TKGERHGTPAER 205
+G R G+P R
Sbjct: 472 LQGPR-GSPNAR 482
>UNIPROTKB|G3MXT4 [details] [associations]
symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
Length = 630
Score = 213 (80.0 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 59/186 (31%), Positives = 98/186 (52%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
G++S + T + NL TEE L E+F +A ++ VP+++ +GY F+EF
Sbjct: 396 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---THIKVPQNQ-NGKSKGYAFIEFA 451
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYD 130
S EDA A+ N ++ G+ IR+ + S + +S LF+ L D E+ L +
Sbjct: 452 SFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKE 510
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
+F G I +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A
Sbjct: 511 SFD--GSI--RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 566
Query: 191 KKDTKG 196
K G
Sbjct: 567 PKGEGG 572
Score = 126 (49.4 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 55/192 (28%), Positives = 94/192 (48%)
Query: 19 AERNQDA-TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
+++++DA T NL +VT++ L E+F A + V KD + +G ++EF++E
Sbjct: 313 SKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIR--LVSKDGKS---KGIAYIEFKTEA 367
Query: 78 DADYAI--KVLNMIKLYGKPIRVNKASQDKKSLDVGAN--LFIGNLDPDVDEKLLYDTFS 133
DA+ + K I G+ + K S G + L + NL E+ L + F
Sbjct: 368 DAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE 427
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
T+ K+ ++ + G S+G+ FI + SFE DA EA+N CN++ A + +
Sbjct: 428 K----ATHIKVPQNQN-GKSKGYAFIEFASFE--DAK-EALNS---CNKREIEGRAIRLE 476
Query: 194 TKGERHGTPAER 205
+G R G+P R
Sbjct: 477 LQGPR-GSPNAR 487
>UNIPROTKB|G3X7M4 [details] [associations]
symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
Length = 630
Score = 213 (80.0 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 59/186 (31%), Positives = 98/186 (52%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
G++S + T + NL TEE L E+F +A ++ VP+++ +GY F+EF
Sbjct: 396 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---THIKVPQNQ-NGKSKGYAFIEFA 451
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYD 130
S EDA A+ N ++ G+ IR+ + S + +S LF+ L D E+ L +
Sbjct: 452 SFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKE 510
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
+F G I +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A
Sbjct: 511 SFD--GSI--RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 566
Query: 191 KKDTKG 196
K G
Sbjct: 567 PKGEGG 572
Score = 126 (49.4 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 55/192 (28%), Positives = 94/192 (48%)
Query: 19 AERNQDA-TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
+++++DA T NL +VT++ L E+F A + V KD + +G ++EF++E
Sbjct: 313 SKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIR--LVSKDGKS---KGIAYIEFKTEA 367
Query: 78 DADYAI--KVLNMIKLYGKPIRVNKASQDKKSLDVGAN--LFIGNLDPDVDEKLLYDTFS 133
DA+ + K I G+ + K S G + L + NL E+ L + F
Sbjct: 368 DAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFE 427
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
T+ K+ ++ + G S+G+ FI + SFE DA EA+N CN++ A + +
Sbjct: 428 K----ATHIKVPQNQN-GKSKGYAFIEFASFE--DAK-EALNS---CNKREIEGRAIRLE 476
Query: 194 TKGERHGTPAER 205
+G R G+P R
Sbjct: 477 LQGPR-GSPNAR 487
>UNIPROTKB|E1B8K6 [details] [associations]
symbol:NCL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
Length = 720
Score = 213 (80.0 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 59/186 (31%), Positives = 98/186 (52%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
G++S + T + NL TEE L E+F +A ++ VP+++ +GY F+EF
Sbjct: 486 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---THIKVPQNQ-NGKSKGYAFIEFA 541
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYD 130
S EDA A+ N ++ G+ IR+ + S + +S LF+ L D E+ L +
Sbjct: 542 SFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKE 600
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
+F G I +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A
Sbjct: 601 SFD--GSI--RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 656
Query: 191 KKDTKG 196
K G
Sbjct: 657 PKGEGG 662
Score = 134 (52.2 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 65/220 (29%), Positives = 108/220 (49%)
Query: 19 AERNQDA-TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
+++++DA T NL +VT++ L E+F A + V KD + +G ++EF++E
Sbjct: 396 SKKDRDARTLLAKNLPYKVTQDELKEVFEDAVEIR--LVSKDGKS---KGIAYIEFKTEA 450
Query: 78 DADYAIKVLNMIKLYGKPIRV----NKA-SQD----KKSLDVGAN--LFIGNLDPDVDEK 126
DA+ ++ ++ G+ I + K SQD K S G + L + NL E+
Sbjct: 451 DAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWSGESKTLVLSNLSYSATEE 510
Query: 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186
L + F T+ K+ ++ + G S+G+ FI + SFE DA EA+N CN++
Sbjct: 511 TLQEVFEK----ATHIKVPQNQN-GKSKGYAFIEFASFE--DAK-EALNS---CNKREIE 559
Query: 187 SYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASG 226
A + + +G R G+P N SQ S+ TLF G
Sbjct: 560 GRAIRLELQGPR-GSP--------NARSQPSK--TLFVKG 588
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 195 (73.7 bits), Expect = 7.6e-14, P = 7.6e-14
Identities = 59/178 (33%), Positives = 91/178 (51%)
Query: 26 TAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNL----------HQ-GYGFVEF 73
T + N PQ +T++ L LF G V + + +D+V H GYGFV +
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNY 79
Query: 74 RSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFS 133
+ +DA+ AI LN ++L K I+V+ A +S+ ANL+I L + +K + D F
Sbjct: 80 LNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIK-DANLYISGLPRTMTQKDVEDMFL 138
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYA 189
FG I+ N +++ D TG SRG FI +D ++ AI + NG + ITV +A
Sbjct: 139 PFGHII-NSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 195
Score = 154 (59.3 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 37/98 (37%), Positives = 56/98 (57%)
Query: 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 157
VN AS S G +F+ NL D DE +L+ F FG VTN K++RD +T +GFG
Sbjct: 245 VNVAS----SATSGWCIFVYNLGQDADEGILWQMFGPFGA-VTNVKVIRDFNTNKCKGFG 299
Query: 158 FISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
F++ ++E + AI ++NG L ++ + VS+ K K
Sbjct: 300 FVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKTSKSHK 337
Score = 122 (48.0 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NL E +LW++F G V NV V +D TN +G+GFV + E+A AI LN
Sbjct: 258 FVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLN 317
Query: 88 MIKLYGKPIRVN-KASQDKK 106
+L K ++V+ K S+ K
Sbjct: 318 GYRLGDKTLQVSFKTSKSHK 337
Score = 108 (43.1 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 28/95 (29%), Positives = 50/95 (52%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S+E +DA Y+ L +T++ + ++F+ G ++N V D+ T L +G F+ F
Sbjct: 110 SSESIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRS 169
Query: 78 DADYAIKVLNMIKLYG--KPIRVNKASQDKKSLDV 110
+A+ AI N K G +PI V A+ ++ +V
Sbjct: 170 EAEEAIASFNGHKPPGSSEPITVKFAANPNQNKNV 204
>UNIPROTKB|I3L8K8 [details] [associations]
symbol:I3L8K8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000102191 EMBL:CT956011
Ensembl:ENSSSCT00000026978 OMA:HRISVAF Uniprot:I3L8K8
Length = 87
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 41/81 (50%), Positives = 56/81 (69%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
SA+ D T +VGNL+ +V EE+L+ELF+QAGP+ V + KDR N + +GFV F+ E
Sbjct: 3 SAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRDGN-PKSFGFVCFKHPE 61
Query: 78 DADYAIKVLNMIKLYGKPIRV 98
YAI +LN I+LYG+PI V
Sbjct: 62 SVSYAIALLNGIRLYGRPINV 82
Score = 123 (48.4 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 29/77 (37%), Positives = 43/77 (55%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+GNL+ V E++LY+ F G + T I +D D GN + FGF+ + E+ AI
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPL-TKVTICKDRD-GNPKSFGFVCFKHPESVSYAIAL 69
Query: 174 MNGQYLCNRQITVSYAY 190
+NG L R I V Y +
Sbjct: 70 LNGIRLYGRPINVQYRF 86
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 208 (78.3 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 50/167 (29%), Positives = 91/167 (54%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N
Sbjct: 114 YVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 173
Query: 88 MIKLYGKPIRVNKASQ--------DKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGV 137
+ L G+ I+V + S D+ + + A +++ ++ D+ + + F AFG
Sbjct: 174 SVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 233
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 179
I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL
Sbjct: 234 I-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 279
Score = 112 (44.5 bits), Expect = 0.00069, P = 0.00069
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 8 GVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQG 67
G ++ Q + E YV ++ ++++ + +F G + + + +D T H+G
Sbjct: 191 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKG 250
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
YGF+E+ + + A+ +N+ L G+ +RV KA
Sbjct: 251 YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 284
>UNIPROTKB|P08199 [details] [associations]
symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
Length = 714
Score = 211 (79.3 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 58/186 (31%), Positives = 98/186 (52%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
G++S + T + NL TEE L E+F +A + VP+++ +GY F+EF
Sbjct: 476 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQ-QGKSKGYAFIEFA 531
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYD 130
S EDA A+ N +++ G+ IR+ + S + +S LF+ L D E+ L +
Sbjct: 532 SFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKE 590
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
+F G + +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A
Sbjct: 591 SFE--GSV--RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646
Query: 191 KKDTKG 196
K G
Sbjct: 647 PKGEGG 652
Score = 136 (52.9 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 43/175 (24%), Positives = 84/175 (48%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++GNL+P + L ++ + N D T ++ +G+V+F S ED + A++ L
Sbjct: 311 FIGNLNPNKSVAEL-KVAISEPFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT 368
Query: 88 MIKLYGKPIRVNKAS-QDKKSLDVGANLFIGNLDPDVDEKLLYDTFS-AFGVIVTNPKIM 145
+K++G I++ K +D K + L NL ++ E L + F A + + +
Sbjct: 369 GLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRL----VS 424
Query: 146 RDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHG 200
+D G S+G +I + S ++ +E G + R +++ Y +K + ER G
Sbjct: 425 QD---GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTG 476
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 208 (78.3 bits), Expect = 5.4e-16, P = 5.4e-16
Identities = 50/167 (29%), Positives = 91/167 (54%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N
Sbjct: 130 YVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 189
Query: 88 MIKLYGKPIRVNKASQ--------DKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGV 137
+ L G+ I+V + S D+ + + A +++ ++ D+ + + F AFG
Sbjct: 190 SVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 249
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 179
I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL
Sbjct: 250 I-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 295
Score = 112 (44.5 bits), Expect = 0.00074, P = 0.00074
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 8 GVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQG 67
G ++ Q + E YV ++ ++++ + +F G + + + +D T H+G
Sbjct: 207 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKG 266
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
YGF+E+ + + A+ +N+ L G+ +RV KA
Sbjct: 267 YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 300
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 208 (78.3 bits), Expect = 7.2e-16, P = 7.2e-16
Identities = 54/151 (35%), Positives = 79/151 (52%)
Query: 26 TAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
T + N PQ +T+ L+ LF GP+ + +D T GY FV+F SE D+ AIK
Sbjct: 125 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIK 184
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
VLN I + K ++V+ A +S+ NL++ NL + + L F +G IV I
Sbjct: 185 VLNGITVRNKRLKVSYARPGGESIK-DTNLYVTNLPRTITDDQLDTIFGKYGSIVQK-NI 242
Query: 145 MRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175
+RD TG RG F+ Y+ E + AI A+N
Sbjct: 243 LRDKLTGRPRGVAFVRYNKREEAQEAISALN 273
Score = 128 (50.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172
NL + L D+ ++ LY F A G I T +IMRD TG S G+ F+ + S S AI+
Sbjct: 126 NLIVNYLPQDMTDRELYALFRAIGPINTC-RIMRDYKTGYSFGYAFVDFTSEMDSQRAIK 184
Query: 173 AMNGQYLCNRQITVSYA 189
+NG + N+++ VSYA
Sbjct: 185 VLNGITVRNKRLKVSYA 201
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 208 (78.3 bits), Expect = 8.4e-16, P = 8.4e-16
Identities = 50/167 (29%), Positives = 91/167 (54%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N
Sbjct: 89 YVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 148
Query: 88 MIKLYGKPIRVNKASQ--------DKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGV 137
+ L G+ I+V + S D+ + + A +++ ++ D+ + + F AFG
Sbjct: 149 SVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 208
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 179
I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL
Sbjct: 209 I-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 254
Score = 112 (44.5 bits), Expect = 0.00087, P = 0.00087
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 8 GVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQG 67
G ++ Q + E YV ++ ++++ + +F G + + + +D T H+G
Sbjct: 166 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKG 225
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
YGF+E+ + + A+ +N+ L G+ +RV KA
Sbjct: 226 YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 259
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 208 (78.3 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 50/167 (29%), Positives = 91/167 (54%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YVG++ ++ E+ + + F GP+ ++ + D VT H+G+ FVE+ E A A++ +N
Sbjct: 24 YVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 83
Query: 88 MIKLYGKPIRVNKASQ--------DKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGV 137
+ L G+ I+V + S D+ + + A +++ ++ D+ + + F AFG
Sbjct: 84 SVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGK 143
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-----GQYL 179
I + + RDP TG +G+GFI Y+ ++S A+ +MN GQYL
Sbjct: 144 I-KSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYL 189
Score = 112 (44.5 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 23/94 (24%), Positives = 48/94 (51%)
Query: 8 GVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQG 67
G ++ Q + E YV ++ ++++ + +F G + + + +D T H+G
Sbjct: 101 GQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKG 160
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
YGF+E+ + + A+ +N+ L G+ +RV KA
Sbjct: 161 YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 194
Score = 49 (22.3 bits), Expect = 8.9e-05, Sum P(2) = 8.9e-05
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 158 FISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
F+ + + AI+A+NG++ R++ V+ Y ++
Sbjct: 363 FVEFSVASETHKAIQALNGRWFAGRKV-VAEVYDQE 397
>UNIPROTKB|E5RGH3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00983093
ProteinModelPortal:E5RGH3 SMR:E5RGH3 Ensembl:ENST00000518196
ArrayExpress:E5RGH3 Bgee:E5RGH3 Uniprot:E5RGH3
Length = 108
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 42/109 (38%), Positives = 68/109 (62%)
Query: 61 VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNL 119
+T GY +V F+ DA+ A+ +N + GKP+R+ + +D G N+FI NL
Sbjct: 2 ITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNL 61
Query: 120 DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 168
D +D K LYDTFSAFG I++ K++ D + G S+G+GF+ +++ EA++
Sbjct: 62 DKSIDNKALYDTFSAFGNILSC-KVVCD-ENG-SKGYGFVHFETQEAAE 107
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 207 (77.9 bits), Expect = 1.9e-15, P = 1.9e-15
Identities = 56/198 (28%), Positives = 97/198 (48%)
Query: 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKV 85
T ++G+L + E L+ F G +V+ V +++ T +GYGF+EF S A+ ++
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 86 LNMIKLYGKP---IRVNKASQ---DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
N + P R+N AS DK+ +F+G+L DV + +L +TF A V
Sbjct: 123 FNNAPIPSFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSV 182
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGER 198
K++ D TG ++G+GF+ + A+ MNG R + + A KK G+R
Sbjct: 183 KGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQR 242
Query: 199 --HGTPAERILAANNPSS 214
+ + A + N+P++
Sbjct: 243 DSYQSSAAGVTTDNDPNN 260
Score = 122 (48.0 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 32/96 (33%), Positives = 49/96 (51%)
Query: 11 ANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVN-VYVPKDRVTNLHQGYG 69
A+L + + D T +VG+L VT+ +L E F + P V V DRVT +GYG
Sbjct: 141 ASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYG 200
Query: 70 FVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK 105
FV F E + A+ +N + +P+R+ A+ K
Sbjct: 201 FVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK 236
Score = 113 (44.8 bits), Expect = 0.00078, P = 0.00078
Identities = 28/88 (31%), Positives = 52/88 (59%)
Query: 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
+ T +VG LD VT++ L +F Q G +V+V +P + GFV+F + A+ A+
Sbjct: 260 NTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRC------GFVQFSEKSCAEEAL 313
Query: 84 KVLNMIKLYGKPIRVN--KASQDKKSLD 109
++LN ++L G +R++ ++ +K+S D
Sbjct: 314 RMLNGVQLGGTTVRLSWGRSPSNKQSGD 341
Score = 77 (32.2 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+G LD V + L + FS +G IV + KI P G + GF+ + ++ A+
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIV-HVKI---P-AG--KRCGFVQFSEKSCAEEALRM 315
Query: 174 MNGQYLCNRQITVSYAYKKDTKGERHGTPAE 204
+NG L + +S+ K + G P++
Sbjct: 316 LNGVQLGGTTVRLSWGRSPSNK--QSGDPSQ 344
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 51/176 (28%), Positives = 92/176 (52%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+VG LD T+E L F Q G VV+ + KD+ TN +G+GFV+F+ + + +
Sbjct: 58 FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK-DPNCVGTVLASR 116
Query: 88 MIKLYGKPIRVNKASQDKKSLDVGAN-LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMR 146
L G+ ++ + +S + +N +F+G + + E L + F FGV VT ++
Sbjct: 117 PHTLDGR--NIDPKQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGV-VTEVVMIY 173
Query: 147 DPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTP 202
D + RGFGFI+++ ++ D A+ M+ + +++ V A +D+K + G P
Sbjct: 174 DAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKSQAPGQP 228
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 206 (77.6 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 53/194 (27%), Positives = 99/194 (51%)
Query: 8 GVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQG 67
G+G+ Q+ + + ++G+L + E + +F Q+G + V ++++T +G
Sbjct: 47 GIGS----QNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEG 102
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYG--KPIRVNKASQ---DKKSLDVGAN--LFIGNLD 120
YGF+EF S A+ ++ N + + R+N A +K+ G + +F+G+L
Sbjct: 103 YGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLA 162
Query: 121 PDVDEKLLYDTF-SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 179
P+V + +L DTF + +G V K++ D TG S+G+GF+ + A+ MNGQY
Sbjct: 163 PEVTDYMLSDTFKNVYGS-VKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYC 221
Query: 180 CNRQITVSYAYKKD 193
R + + A K+
Sbjct: 222 STRPMRIGPAANKN 235
Score = 154 (59.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 54/195 (27%), Positives = 93/195 (47%)
Query: 24 DATAYVGNLDPQVTEELLWELFVQA-GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYA 82
D T +VG+L P+VT+ +L + F G V V DR T +GYGFV F E + A
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 83 IKVLNMIKLYGKPIRVNKASQDKKSLDV---------GAN----------LFIGNLDPDV 123
+ +N +P+R+ A+ +K +L + GAN +F+G LD +V
Sbjct: 213 MTEMNGQYCSTRPMRIGPAA-NKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANV 271
Query: 124 DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ 183
+ L F FG ++ + KI P + GF+ Y + +++ A+ +NG L +
Sbjct: 272 TDDELKSIFGQFGELL-HVKI---PP---GKRCGFVQYANKASAEHALSVLNGTQLGGQS 324
Query: 184 ITVSYAYKKDTKGER 198
I +S+ + + ++
Sbjct: 325 IRLSWGRSPNKQSDQ 339
Score = 119 (46.9 bits), Expect = 0.00015, P = 0.00015
Identities = 30/104 (28%), Positives = 56/104 (53%)
Query: 7 PGVGANLLGQHSAERN-QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLH 65
P + N G ++ + + + T +VG LD VT++ L +F Q G +++V +P +
Sbjct: 241 PAMYQNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIPPGKRC--- 297
Query: 66 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLD 109
GFV++ ++ A++A+ VLN +L G+ IR++ K D
Sbjct: 298 ---GFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSD 338
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 206 (77.6 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 54/166 (32%), Positives = 90/166 (54%)
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVD 124
Y FVEF DA A+ +N K+ GK ++VN A S KK ++F+G+L P++
Sbjct: 66 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 125
Query: 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFIS-YDSFEASDAAIEAMNGQYLCNRQ 183
+ + F+ FG I ++ ++++D TG S+G+GF+S Y+ +A +A + M GQ+L RQ
Sbjct: 126 TEDIKSAFAPFGKI-SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQ 183
Query: 184 ITVSYAYKKDT---KGERHGTPAERILAANNPSSQKSRPHTLFASG 226
I ++A +K + + T R N SS K+ T++ G
Sbjct: 184 IRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNC--TVYCGG 227
Score = 147 (56.8 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 50/170 (29%), Positives = 85/170 (50%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+VG+L P++T E + F G + + V KD T +GYGFV F ++ DA+ AI +
Sbjct: 116 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 175
Query: 88 MIKLYGKPIRVN---------KASQDK--KSL---DV-------GANLFIGNLDPDVDEK 126
L G+ IR N K++Q+ K L DV ++ G + + ++
Sbjct: 176 GQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 235
Query: 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176
L+ TFS FG I+ +I P+ +G+ F+ + + E++ AI ++NG
Sbjct: 236 LMRQTFSPFGQIM---EIRVFPE----KGYSFVRFSTHESAAHAIVSVNG 278
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 206 (77.6 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 54/166 (32%), Positives = 90/166 (54%)
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVD 124
Y FVEF DA A+ +N K+ GK ++VN A S KK ++F+G+L P++
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFIS-YDSFEASDAAIEAMNGQYLCNRQ 183
+ + F+ FG I ++ ++++D TG S+G+GF+S Y+ +A +A + M GQ+L RQ
Sbjct: 127 TEDIKSAFAPFGKI-SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQ 184
Query: 184 ITVSYAYKKDT---KGERHGTPAERILAANNPSSQKSRPHTLFASG 226
I ++A +K + + T R N SS K+ T++ G
Sbjct: 185 IRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNC--TVYCGG 228
Score = 147 (56.8 bits), Expect = 9.6e-08, P = 9.6e-08
Identities = 50/170 (29%), Positives = 85/170 (50%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+VG+L P++T E + F G + + V KD T +GYGFV F ++ DA+ AI +
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 88 MIKLYGKPIRVN---------KASQDK--KSL---DV-------GANLFIGNLDPDVDEK 126
L G+ IR N K++Q+ K L DV ++ G + + ++
Sbjct: 177 GQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 236
Query: 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176
L+ TFS FG I+ +I P+ +G+ F+ + + E++ AI ++NG
Sbjct: 237 LMRQTFSPFGQIM---EIRVFPE----KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 206 (77.6 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 54/166 (32%), Positives = 90/166 (54%)
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVD 124
Y FVEF DA A+ +N K+ GK ++VN A S KK ++F+G+L P++
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFIS-YDSFEASDAAIEAMNGQYLCNRQ 183
+ + F+ FG I ++ ++++D TG S+G+GF+S Y+ +A +A + M GQ+L RQ
Sbjct: 127 TEDIKSAFAPFGKI-SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQ 184
Query: 184 ITVSYAYKKDT---KGERHGTPAERILAANNPSSQKSRPHTLFASG 226
I ++A +K + + T R N SS K+ T++ G
Sbjct: 185 IRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNC--TVYCGG 228
Score = 147 (56.8 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 50/170 (29%), Positives = 85/170 (50%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+VG+L P++T E + F G + + V KD T +GYGFV F ++ DA+ AI +
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 88 MIKLYGKPIRVN---------KASQDK--KSL---DV-------GANLFIGNLDPDVDEK 126
L G+ IR N K++Q+ K L DV ++ G + + ++
Sbjct: 177 GQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 236
Query: 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176
L+ TFS FG I+ +I P+ +G+ F+ + + E++ AI ++NG
Sbjct: 237 LMRQTFSPFGQIM---EIRVFPE----KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 206 (77.6 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 54/166 (32%), Positives = 90/166 (54%)
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVD 124
Y FVEF DA A+ +N K+ GK ++VN A S KK ++F+G+L P++
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFIS-YDSFEASDAAIEAMNGQYLCNRQ 183
+ + F+ FG I ++ ++++D TG S+G+GF+S Y+ +A +A + M GQ+L RQ
Sbjct: 127 TEDIKSAFAPFGKI-SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQ 184
Query: 184 ITVSYAYKKDT---KGERHGTPAERILAANNPSSQKSRPHTLFASG 226
I ++A +K + + T R N SS K+ T++ G
Sbjct: 185 IRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNC--TVYCGG 228
Score = 147 (56.8 bits), Expect = 9.8e-08, P = 9.8e-08
Identities = 50/170 (29%), Positives = 85/170 (50%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+VG+L P++T E + F G + + V KD T +GYGFV F ++ DA+ AI +
Sbjct: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
Query: 88 MIKLYGKPIRVN---------KASQDK--KSL---DV-------GANLFIGNLDPDVDEK 126
L G+ IR N K++Q+ K L DV ++ G + + ++
Sbjct: 177 GQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQ 236
Query: 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176
L+ TFS FG I+ +I P+ +G+ F+ + + E++ AI ++NG
Sbjct: 237 LMRQTFSPFGQIM---EIRVFPE----KGYSFVRFSTHESAAHAIVSVNG 279
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 44/121 (36%), Positives = 72/121 (59%)
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA---SQDKKSLDVGANLFIGNLDPDVD 124
Y FVEF DA A+ +N K+ GK ++VN A S KK ++F+G+L P++
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 70
Query: 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFIS-YDSFEASDAAIEAMNGQYLCNRQ 183
+ + F+ FG I ++ ++++D TG S+G+GF+S Y+ +A +A + M GQ+L RQ
Sbjct: 71 TEDIKSAFAPFGKI-SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH-MGGQWLGGRQ 128
Query: 184 I 184
I
Sbjct: 129 I 129
Score = 117 (46.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 27/72 (37%), Positives = 40/72 (55%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+VG+L P++T E + F G + + V KD T +GYGFV F ++ DA+ AI +
Sbjct: 61 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 120
Query: 88 MIKLYGKPIRVN 99
L G+ IR N
Sbjct: 121 GQWLGGRQIRTN 132
>UNIPROTKB|F1N209 [details] [associations]
symbol:RBM11 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:YRFGSSR
GeneTree:ENSGT00690000102191 EMBL:DAAA02000527 IPI:IPI00911874
RefSeq:XP_003581718.1 UniGene:Bt.104085 Ensembl:ENSBTAT00000048660
GeneID:100850231 KEGG:bta:100850231 NextBio:20926533 Uniprot:F1N209
Length = 246
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 39/80 (48%), Positives = 54/80 (67%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ D T +VGNL+ +V EE+L+ELF+QAGP+ V + KDR + +GFV F+ E
Sbjct: 4 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPES 62
Query: 79 ADYAIKVLNMIKLYGKPIRV 98
YAI +LN I+LYG+PI V
Sbjct: 63 VSYAIALLNGIRLYGRPINV 82
Score = 115 (45.5 bits), Expect = 0.00017, P = 0.00017
Identities = 31/100 (31%), Positives = 48/100 (48%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+GNL+ V E++LY+ F G + T I +D + G + FGF+ + E+ AI
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPL-TKVTICKDRE-GKPKSFGFVCFKHPESVSYAIAL 69
Query: 174 MNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPS 213
+NG L R I V Y + E E + N+ S
Sbjct: 70 LNGIRLYGRPINVQYRFGSSRSCEPANQSFESCVKINSHS 109
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 202 (76.2 bits), Expect = 3.2e-15, P = 3.2e-15
Identities = 58/188 (30%), Positives = 95/188 (50%)
Query: 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADY 81
NQ +VG L+ Q T+E L F Q G + + V ++ + +GFV + S E+AD
Sbjct: 3 NQLCKLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADA 62
Query: 82 AIKVLNMIKLYGKPIRVNKA--SQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFG 136
A+ I + G + + +A +D ++ A +F+G L D++++ L D FS FG
Sbjct: 63 AMSARPHI-VDGNNVDLKRAVAREDAGKPEMLAKVKKIFVGGLKDDIEDEHLQDYFSQFG 121
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD--- 193
I +++ D DTG RGFGF+ +D +++D A+ M +C ++ V A K
Sbjct: 122 PI-EKAQVITDKDTGKKRGFGFVYFDDNDSADKAV-VMKFHSICGHKVEVKKALTKQEMQ 179
Query: 194 -TKGERHG 200
T G R G
Sbjct: 180 STGGGRGG 187
>MGI|MGI:2447622 [details] [associations]
symbol:Rbm11 "RNA binding motif protein 11" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2447622 GO:GO:0007275
GO:GO:0030154 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH466521
HSSP:P33240 CTD:54033 eggNOG:NOG245318 HOGENOM:HOG000146448
HOVERGEN:HBG061506 EMBL:AC166995 EMBL:BC050779 EMBL:AK039297
IPI:IPI00133149 RefSeq:NP_938044.1 UniGene:Mm.273214
ProteinModelPortal:Q80YT9 SMR:Q80YT9 Ensembl:ENSMUST00000046378
Ensembl:ENSMUST00000114253 GeneID:224344 KEGG:mmu:224344
UCSC:uc007zro.1 GeneTree:ENSGT00690000102191 NextBio:377164
Bgee:Q80YT9 Genevestigator:Q80YT9 Uniprot:Q80YT9
Length = 238
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 39/80 (48%), Positives = 54/80 (67%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ D T +VGNL+ +V EE+L+ELF+QAGP+ V + KDR + +GFV F+ E
Sbjct: 4 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTLCKDR-DGKPKSFGFVCFKHPES 62
Query: 79 ADYAIKVLNMIKLYGKPIRV 98
YAI +LN I+LYG+PI V
Sbjct: 63 VSYAIALLNGIRLYGRPINV 82
Score = 118 (46.6 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 31/100 (31%), Positives = 47/100 (47%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+GNL+ V E++LY+ F G + T + +D D G + FGF+ + E+ AI
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPL-TKVTLCKDRD-GKPKSFGFVCFKHPESVSYAIAL 69
Query: 174 MNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPS 213
+NG L R I V Y + E E N+ S
Sbjct: 70 LNGIRLYGRPINVQYRFGSSRSSEPANQSFESCAKINSHS 109
>RGD|1305195 [details] [associations]
symbol:Rbm11 "RNA binding motif protein 11" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305195 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YRFGSSR OrthoDB:EOG4Q58Q1 GeneTree:ENSGT00690000102191
IPI:IPI00363165 Ensembl:ENSRNOT00000047240 UCSC:RGD:1305195
Uniprot:D3ZQ24
Length = 238
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 39/80 (48%), Positives = 54/80 (67%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ D T +VGNL+ +V EE+L+ELF+QAGP+ V + KDR + +GFV F+ E
Sbjct: 4 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTLCKDR-DGKPKSFGFVCFKHPES 62
Query: 79 ADYAIKVLNMIKLYGKPIRV 98
YAI +LN I+LYG+PI V
Sbjct: 63 VSYAIALLNGIRLYGRPINV 82
Score = 118 (46.6 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 31/100 (31%), Positives = 47/100 (47%)
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173
+F+GNL+ V E++LY+ F G + T + +D D G + FGF+ + E+ AI
Sbjct: 12 VFVGNLEARVREEILYELFLQAGPL-TKVTLCKDRD-GKPKSFGFVCFKHPESVSYAIAL 69
Query: 174 MNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPS 213
+NG L R I V Y + E E N+ S
Sbjct: 70 LNGIRLYGRPINVQYRFGNSRSSEPANQSFESCAKINSHS 109
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 50/175 (28%), Positives = 89/175 (50%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+VG LD T+E L F Q G VV+ + KD+ TN +G+GFV+F+ + + +
Sbjct: 13 FVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFK-DPNCVGTVLASR 71
Query: 88 MIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 147
L G+ + ++ K + +F+G + + E L + F FGV VT ++ D
Sbjct: 72 PHTLDGRNQKGPRSDNSKSN-----KIFVGGIPHNCGETELREYFKKFGV-VTEVVMIYD 125
Query: 148 PDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTP 202
+ RGFGFI+++ ++ D A+ M+ + +++ V A +D+K + G P
Sbjct: 126 AEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSKSQAPGQP 179
>UNIPROTKB|P19338 [details] [associations]
symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938
Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
Length = 710
Score = 208 (78.3 bits), Expect = 4.3e-15, P = 4.3e-15
Identities = 58/186 (31%), Positives = 97/186 (52%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
G++S + T + NL TEE L E+F +A + VP+++ +GY F+EF
Sbjct: 476 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQ-NGKSKGYAFIEFA 531
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYD 130
S EDA A+ N ++ G+ IR+ + S + +S LF+ L D E+ L +
Sbjct: 532 SFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKE 590
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
+F G + +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A
Sbjct: 591 SFD--GSV--RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646
Query: 191 KKDTKG 196
K G
Sbjct: 647 PKGEGG 652
Score = 128 (50.1 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 61/223 (27%), Positives = 101/223 (45%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
G+ S + T NL +VT++ L E+F A + V KD + +G ++EF+
Sbjct: 383 GKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR--LVSKDGKS---KGIAYIEFK 437
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV--GAN---------LFIGNLDPDV 123
+E DA+ + ++ G+ I + + ++ D G N L + NL
Sbjct: 438 TEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSA 497
Query: 124 DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ 183
E+ L + F I K+ ++ + G S+G+ FI + SFE DA EA+N CN++
Sbjct: 498 TEETLQEVFEKATFI----KVPQNQN-GKSKGYAFIEFASFE--DAK-EALNS---CNKR 546
Query: 184 ITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASG 226
A + + +G R G+P N SQ S+ TLF G
Sbjct: 547 EIEGRAIRLELQGPR-GSP--------NARSQPSK--TLFVKG 578
>UNIPROTKB|Q4R4J7 [details] [associations]
symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
PRIDE:Q4R4J7 Uniprot:Q4R4J7
Length = 711
Score = 208 (78.3 bits), Expect = 4.3e-15, P = 4.3e-15
Identities = 58/186 (31%), Positives = 97/186 (52%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
G++S + T + NL TEE L E+F +A + VP+++ +GY F+EF
Sbjct: 477 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQ-NGKSKGYAFIEFA 532
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYD 130
S EDA A+ N ++ G+ IR+ + S + +S LF+ L D E+ L +
Sbjct: 533 SFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKE 591
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
+F G + +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A
Sbjct: 592 SFD--GSV--RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 647
Query: 191 KKDTKG 196
K G
Sbjct: 648 PKGEGG 653
Score = 128 (50.1 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 61/223 (27%), Positives = 101/223 (45%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
G+ S + T NL +VT++ L E+F A + V KD + +G ++EF+
Sbjct: 384 GKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR--LVSKDGKS---KGIAYIEFK 438
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV--GAN---------LFIGNLDPDV 123
+E DA+ + ++ G+ I + + ++ D G N L + NL
Sbjct: 439 TEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSA 498
Query: 124 DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ 183
E+ L + F I K+ ++ + G S+G+ FI + SFE DA EA+N CN++
Sbjct: 499 TEETLQEVFEKATFI----KVPQNQN-GKSKGYAFIEFASFE--DAK-EALNS---CNKR 547
Query: 184 ITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASG 226
A + + +G R G+P N SQ S+ TLF G
Sbjct: 548 EIEGRAIRLELQGPR-GSP--------NARSQPSK--TLFVKG 579
>UNIPROTKB|Q5RF26 [details] [associations]
symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
Length = 712
Score = 208 (78.3 bits), Expect = 4.3e-15, P = 4.3e-15
Identities = 58/186 (31%), Positives = 97/186 (52%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
G++S + T + NL TEE L E+F +A + VP+++ +GY F+EF
Sbjct: 478 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQ-NGKSKGYAFIEFA 533
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVN----KASQDKKSLDVGANLFIGNLDPDVDEKLLYD 130
S EDA A+ N ++ G+ IR+ + S + +S LF+ L D E+ L +
Sbjct: 534 SFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARS-QPSKTLFVKGLSEDTTEETLKE 592
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
+F G + +I+ D +TG+S+GFGF+ ++S E + AA EAM + ++T+ +A
Sbjct: 593 SFD--GSV--RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 648
Query: 191 KKDTKG 196
K G
Sbjct: 649 PKGEGG 654
Score = 128 (50.1 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 61/223 (27%), Positives = 101/223 (45%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
G+ S + T NL +VT++ L E+F A + V KD + +G ++EF+
Sbjct: 385 GKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIR--LVSKDGKS---KGIAYIEFK 439
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV--GAN---------LFIGNLDPDV 123
+E DA+ + ++ G+ I + + ++ D G N L + NL
Sbjct: 440 TEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSA 499
Query: 124 DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ 183
E+ L + F I K+ ++ + G S+G+ FI + SFE DA EA+N CN++
Sbjct: 500 TEETLQEVFEKATFI----KVPQNQN-GKSKGYAFIEFASFE--DAK-EALNS---CNKR 548
Query: 184 ITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASG 226
A + + +G R G+P N SQ S+ TLF G
Sbjct: 549 EIEGRAIRLELQGPR-GSP--------NARSQPSK--TLFVKG 580
WARNING: HSPs involving 1080 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.133 0.389 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 377 287 0.00087 115 3 11 23 0.43 34
33 0.43 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1330
No. of states in DFA: 606 (64 KB)
Total size of DFA: 193 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 27.17u 0.15s 27.32t Elapsed: 00:00:02
Total cpu time: 27.23u 0.15s 27.38t Elapsed: 00:00:02
Start: Tue May 21 03:55:26 2013 End: Tue May 21 03:55:28 2013
WARNINGS ISSUED: 2