BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017119
(377 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 350 bits (898), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 161/205 (78%), Positives = 183/205 (89%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
+ERNQDAT YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERILAANNPSSQKSRPHTLF 223
HG+ AER+LAA NP SQ RPH LF
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLF 211
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQG 67
+ N H+ + A ++GNLDP++ E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-SQDKK 106
Y F+ F S + +D AI+ +N L +PI V+ A +D K
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 350 bits (898), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 161/205 (78%), Positives = 183/205 (89%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
+ERNQDAT YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERILAANNPSSQKSRPHTLF 223
HG+ AER+LAA NP SQ RPH LF
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLF 211
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQG 67
+ N H+ + A ++GNLDP++ E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-SQDKK 106
Y F+ F S + +D AI+ +N L +PI V+ A +D K
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 350 bits (898), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 161/205 (78%), Positives = 183/205 (89%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
+ERNQDAT YVG LD +V+E LLWELF+QAGPVVN ++PKDRVT HQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERILAANNPSSQKSRPHTLF 223
HG+ AER+LAA NP SQ RPH LF
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLF 211
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQG 67
+ N H+ + A ++GNLDP++ E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-SQDKK 106
Y F+ F S + +D AI+ +N L +PI V+ A +D K
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 333 bits (854), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 152/208 (73%), Positives = 179/208 (86%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
ERNQDAT YVG LD +V+E +LWEL VQAGPVV+V +PKDRVT HQG+GFVEF EEDA
Sbjct: 8 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
DYAIK+LNMIKLYGKPI+VNKAS +K++DVGAN+F+GNLDP+VDEKLLYDTFSAFGVI+
Sbjct: 68 DYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVIL 127
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
PKIMRD D+G S+GF FI++ SFEASD A+EAMNGQ+LCNR ITVSYA+K+D+KGERH
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERH 187
Query: 200 GTPAERILAANNPSSQKSRPHTLFASGP 227
GT AER+LAA NP K RPH +F+ P
Sbjct: 188 GTAAERMLAAQNPLFPKDRPHQVFSDVP 215
>sp|O14102|SAP49_SCHPO Spliceosome-associated protein 49 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sap49 PE=3 SV=2
Length = 335
Score = 255 bits (652), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 151/182 (82%), Gaps = 2/182 (1%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
+RNQDAT Y+GNLD +VT+ +L+EL +QAGPVVN+++P+DRV N H G+GF EF E+D
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDK-KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
+YA ++LN +KL+GKPIRVN+ASQD+ + +GANLF+GNLDP VDE++LYDTFSA G +
Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQL 125
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
V P++ RD + G S+G+GF+SYDSFE +DAAIEAMN Q+L N+ ITVSYA+K++ KGER
Sbjct: 126 VKAPQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGER 184
Query: 199 HG 200
HG
Sbjct: 185 HG 186
>sp|Q55GD6|SF3B4_DICDI Splicing factor 3B subunit 4 OS=Dictyostelium discoideum GN=sf3b4
PE=3 SV=1
Length = 359
Score = 237 bits (604), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 112/191 (58%), Positives = 151/191 (79%), Gaps = 4/191 (2%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
ERN +A + +LDP VTE LL ELF+QA PVV V++PKD++T H G +VEF+S DA
Sbjct: 8 ERNHEACLLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDA 67
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
+YA+KV+ ++L+ K I++ K ++DK +D+GANLFIGNLD DVDE++L+DTFS FG I+
Sbjct: 68 EYALKVMKFVRLFNKEIKIKKENKDK--VDIGANLFIGNLDADVDERILHDTFSRFGTII 125
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
PK+MRD + G S+GF FI++DSFEASDAAIEAMN Q+LCN+ I+V+YA KKD+ ERH
Sbjct: 126 FTPKVMRD-ENGVSKGFAFINFDSFEASDAAIEAMNSQFLCNKPISVTYARKKDS-NERH 183
Query: 200 GTPAERILAAN 210
G+ AERI+AA+
Sbjct: 184 GSSAERIIAAS 194
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 108/165 (65%), Gaps = 3/165 (1%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG LDP VTE +L+ELF GPV ++ V +D VT GY +V F + ED + A+
Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + G+P R+ + +D +G N+FI NLDP +D K L+DTFSAFG I++ K
Sbjct: 140 ELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILS-CK 198
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188
+ D + GN++G+GF+ +DS E+++AAIE +NG L ++++ V +
Sbjct: 199 VAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 242
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 109/209 (52%), Gaps = 30/209 (14%)
Query: 14 LGQHSAERNQDA----------TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTN 63
+G H + R + + Y+ NLD ++TE+ +LF Q G + ++ + KD+ +
Sbjct: 240 VGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQ-ND 298
Query: 64 LHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DKK 106
+G+GFV + + E A A+ LN + GK + V +A + +K
Sbjct: 299 KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKM 358
Query: 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEA 166
+ G NLFI NL +VD++ L FSAFG I T+ KIM D + G S+GFGF+ Y + E
Sbjct: 359 NKYQGVNLFIKNLQDEVDDERLKAEFSAFGTI-TSAKIMTD-EQGKSKGFGFVCYTTPEE 416
Query: 167 SDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
++ A+ MN + L + + V+ A +K+ +
Sbjct: 417 ANKAVTEMNQRMLAGKPLYVALAQRKEVR 445
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 96/177 (54%), Gaps = 10/177 (5%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLDP + + L + F G +++ V D + N +GYGFV F S E A+ AI+ +N
Sbjct: 171 FIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNA-KGYGFVHFDSVESANAAIEHVN 229
Query: 88 MIKLYGKPIRV-NKASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L K + V + S+ ++ V A N++I NLD ++ E+ D F FG I T
Sbjct: 230 GMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEI-T 288
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
+ +++D + RGFGF++Y + E + A++ +N + +++ V A KK + E
Sbjct: 289 SLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREE 344
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 138 bits (347), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 109/173 (63%), Gaps = 3/173 (1%)
Query: 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
G +A + + + YVG+LD VT+ L++ F Q G VV V V +D VT GYG+V F
Sbjct: 26 GGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFT 85
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFS 133
+ +DA AI+ LN I LYGKPIRV + +D GA N+FI NLD +D K L+DTFS
Sbjct: 86 NPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFS 145
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186
+FG IV+ K+ D +G S+G+GF+ Y + E++ AIE +NG L ++Q+ V
Sbjct: 146 SFGNIVS-CKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 95/183 (51%), Gaps = 8/183 (4%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S R+ ++ NLD + + L + F G +V+ V D + +GYGFV++ +EE
Sbjct: 117 SVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEE 175
Query: 78 DADYAIKVLNMIKLYGKPIRV----NKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTF 132
A AI+ LN + L K + V + +D + N+++ NL + L + F
Sbjct: 176 SAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAF 235
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
+G I T+ +M+D + G S+GFGF+++++ + + A+E++NG +++ V A KK
Sbjct: 236 GEYGKI-TSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK 293
Query: 193 DTK 195
+
Sbjct: 294 SER 296
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
+ +A++ Q + YV NLDP +++E L E+F G V + V +D +G GFV F +
Sbjct: 309 KEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAFAT 367
Query: 76 EEDADYAIKVLNMIKLYGKPIRV 98
E+A A+ L+ + KP+ V
Sbjct: 368 PEEATEAMSQLSGKMIESKPLYV 390
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 197
+ D S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 131 VC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 97/185 (52%), Gaps = 21/185 (11%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Y+ N + +E L ELF + GP ++V V D + +G+GFV F EDA A+ +N
Sbjct: 194 YIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 88 MIKLYGKPIRVNKA-----------------SQDKKSLDVGANLFIGNLDPDVDEKLLYD 130
+L GK I V +A QD+ + G NL++ NLD +D++ L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + + + V+ A
Sbjct: 313 EFSPFGTI-TSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 191 KKDTK 195
+K+ +
Sbjct: 370 RKEER 374
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 100/172 (58%), Gaps = 11/172 (6%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L + F FG ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 197
+ D S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 131 VC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 100/172 (58%), Gaps = 11/172 (6%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L D F FG ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 21/186 (11%)
Query: 27 AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL 86
Y+ N + +E L +LF + GP ++V V D + +G+GFV F EDA A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 87 NMIKLYGKPIRVNKA-----------------SQDKKSLDVGANLFIGNLDPDVDEKLLY 129
N +L GK I V +A QD+ + G NL++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189
FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + + + V+ A
Sbjct: 312 KEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 190 YKKDTK 195
+K+ +
Sbjct: 369 QRKEER 374
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 197
+ D S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 131 VC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 100/172 (58%), Gaps = 11/172 (6%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L D F FG ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 21/186 (11%)
Query: 27 AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL 86
Y+ N + +E L +LF + GP ++V V D + +G+GFV F EDA A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 87 NMIKLYGKPIRVNKA-----------------SQDKKSLDVGANLFIGNLDPDVDEKLLY 129
N +L GK I V +A QD+ + G NL++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189
FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + + + V+ A
Sbjct: 312 KEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 190 YKKDTK 195
+K+ +
Sbjct: 369 QRKEER 374
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 136 bits (343), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 197
+ D S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 131 VC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 97/186 (52%), Gaps = 21/186 (11%)
Query: 27 AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL 86
Y+ N + +E L ELF + GP ++V V D + +G+GFV F EDA A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 87 NMIKLYGKPIRVNKA-----------------SQDKKSLDVGANLFIGNLDPDVDEKLLY 129
N +L GK I V +A QD+ + G NL++ NLD +D++ L
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189
FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + + + V+ A
Sbjct: 312 KEFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 190 YKKDTK 195
+K+ +
Sbjct: 369 QRKEER 374
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 100/172 (58%), Gaps = 11/172 (6%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L + F FG ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 107/175 (61%), Gaps = 5/175 (2%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P TE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 197
+ D S+G+GF+ +++ EA++ AIE MNG L +R++ V + +K+ + E
Sbjct: 131 VC---DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 100/172 (58%), Gaps = 11/172 (6%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L D F FG ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 97/185 (52%), Gaps = 21/185 (11%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Y+ N + +E L +LF + GP ++V V D + +G+GFV F EDA A+ +N
Sbjct: 194 YIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 88 MIKLYGKPIRVNKA-----------------SQDKKSLDVGANLFIGNLDPDVDEKLLYD 130
+L GK I V +A QD+ + G NL++ NLD +D++ L
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + + + V+ A
Sbjct: 313 EFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 191 KKDTK 195
+K+ +
Sbjct: 370 RKEER 374
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 135 bits (339), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 108/171 (63%), Gaps = 4/171 (2%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG LDP VTE +L+ELF Q G V ++ V +D VT GY +V + + D + A++
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + G+P R+ + +D GA N+FI NLD +D K L+DTF+AFG I++ K
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILS-CK 178
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY-KKD 193
+ +D + GNS+G+GF+ Y++ EA+ AI+ +NG L +++ V + KKD
Sbjct: 179 VAQD-EHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKD 228
Score = 92.8 bits (229), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 103/192 (53%), Gaps = 12/192 (6%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L + F G +++ V +D N +GYGFV + ++E A AIK +N
Sbjct: 151 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGN-SKGYGFVHYETDEAASQAIKHVN 209
Query: 88 MIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L K + V K + K ++ AN +++ N++ +V ++ + F+ FG VT
Sbjct: 210 GMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGE-VT 268
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE--R 198
+ + RD + G SRGFGF+++ + EA+ A++ +NG+ + + V A KK + E R
Sbjct: 269 SSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELR 327
Query: 199 HGTPAERILAAN 210
A R+ AN
Sbjct: 328 KSYEAARLEKAN 339
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 97/225 (43%), Gaps = 59/225 (26%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YV N++ +VT+E ELF + G V + + +D+ +G+GFV F + E A A+ LN
Sbjct: 244 YVKNINNEVTDEEFRELFAKFGEVTSSSLARDQ-EGKSRGFGFVNFTTHEAAAQAVDELN 302
Query: 88 MIKLYGKPIRVNKASQD-------KKSLDV----------GANLFIGNLDPDVDEKLLYD 130
G+ + V +A + +KS + G NL+I NL DVD+ L
Sbjct: 303 GKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRA 362
Query: 131 TFSAFGVIVTNPKIMRDP----------------------------------------DT 150
FS +G I T+ K+MRD
Sbjct: 363 MFSEYGPI-TSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKL 421
Query: 151 GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
G S+GFGF+ + + + + A+ MN + + + + V+ A +KD +
Sbjct: 422 GKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVR 466
>sp|Q99181|HSH49_YEAST Protein HSH49 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HSH49 PE=1 SV=1
Length = 213
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 117/195 (60%), Gaps = 15/195 (7%)
Query: 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKV 85
T YVGN+DP++T+E L+ELF+Q PV+ + PKD+V +QGY F+EF ++ DA YAIK+
Sbjct: 10 TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKI 69
Query: 86 L-NMIKLYGKPIRVNKASQDKKSLDV-----------GANLFIGNLDPDVDEKLLYDTFS 133
+ N ++LY + I+V + + + ++ A LFI NL +D L F+
Sbjct: 70 MNNTVRLYDRLIKVRQVTNSTGTTNLPSNISKDMILPIAKLFIKNLADSIDSDQLVKIFN 129
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
FG ++ P+I G + ++ ++ FE +D AI+++N Q + N +ITV YA+K++
Sbjct: 130 KFGKLIREPEIFY-LSNGKLKC-AYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFKEN 187
Query: 194 TKGE-RHGTPAERIL 207
KG ++G +R+L
Sbjct: 188 GKGNAKYGDDVDRLL 202
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 108/175 (61%), Gaps = 5/175 (2%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GKP+R+ + +D G N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 197
+ D S+G+GF+ +++ EA++ AI+ MNG L +R++ V + +K+ + E
Sbjct: 131 VC---DENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 97/172 (56%), Gaps = 11/172 (6%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D+D++ L + F +G ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D D G SRGFGF+S++ E + A++ MNG+ L + I V A KK
Sbjct: 220 -VKVMTD-DHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 93/185 (50%), Gaps = 21/185 (11%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Y+ N + +E L E F Q G ++V V D +G+GFV F EDA A+ +N
Sbjct: 194 YIKNFGEDMDDERLKEWFGQYGAALSVKVMTDD-HGKSRGFGFVSFERHEDAQKAVDDMN 252
Query: 88 MIKLYGKPIRVNKA-----------------SQDKKSLDVGANLFIGNLDPDVDEKLLYD 130
L GK I V +A QD+ + G NL++ NLD +D++ L
Sbjct: 253 GKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRK 312
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
F+ FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + + + V+ A
Sbjct: 313 EFTPFGSI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369
Query: 191 KKDTK 195
+K+ +
Sbjct: 370 RKEER 374
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 110/179 (61%), Gaps = 3/179 (1%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
SA + A+ YVG LDP VTE +L+ELF G V ++ V +D VT GY +V + +
Sbjct: 45 SANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 104
Query: 78 DADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFG 136
D + A++ LN + GKP R+ + +D G N+FI NLD +D K L+DTF+AFG
Sbjct: 105 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG 164
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
I++ K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG L ++++ V + K +
Sbjct: 165 NILS-CKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR 221
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 98/177 (55%), Gaps = 10/177 (5%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L + F G +++ V +D N +GYGFV + + E A+ AIK +N
Sbjct: 143 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVN 201
Query: 88 MIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L K + ++K + K ++ AN ++I N+D +V ++ F FG I T
Sbjct: 202 GMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEI-T 260
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
+ + RD + G SRGFGF+++ + +++ AA++ MN + + +++ V A KK + E
Sbjct: 261 SATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREE 316
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 73/254 (28%)
Query: 13 LLGQHSAERNQDA----------TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVT 62
+G H +++++ + Y+ N+D +VT+E ++F + G + + + +D+
Sbjct: 211 FVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQ-E 269
Query: 63 NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DK 105
+G+GFV F + + A A+ +N ++ G+ + V +A + +K
Sbjct: 270 GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEK 329
Query: 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDT--------------- 150
S G NL++ NL DVD++ L + FS FG I T+ K+MRD T
Sbjct: 330 ASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTI-TSAKVMRDTVTAGETSESEKEKESNK 388
Query: 151 -----------------------------GNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
G S+GFGF+ + S + + A+ MN + +
Sbjct: 389 ENEKEGEEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNG 448
Query: 182 RQITVSYAYKKDTK 195
+ + V+ A +KD +
Sbjct: 449 KPLYVALAQRKDVR 462
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 107/172 (62%), Gaps = 3/172 (1%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG LDP VTE +L+ELF G V ++ V +D VT GY +V + + D + A++
Sbjct: 49 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 108
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + GKP R+ + +D G N+FI NLD +D K L+DTF+AFG I++ K
Sbjct: 109 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS-CK 167
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG L ++++ V + K +
Sbjct: 168 VAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR 218
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 99/177 (55%), Gaps = 10/177 (5%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L + F G +++ V +D N +GYGFV + + E A+ AIK +N
Sbjct: 140 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVN 198
Query: 88 MIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L K + ++K + K ++ AN ++I N+D DV E+ + F FG I T
Sbjct: 199 GMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEI-T 257
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
+ + RD + G SRGFGF+++ + E++ AA++ MN + + +++ V A KK + E
Sbjct: 258 SATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREE 313
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 19/139 (13%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Y+ N+D VTEE ELF + G + + + +D+ +G+GFV F + E A A+ +N
Sbjct: 233 YIKNIDQDVTEEEFRELFEKFGEITSATLSRDQ-EGKSRGFGFVNFSTHESAQAAVDEMN 291
Query: 88 MIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYD 130
++ + + V +A + +K S G NL++ NL DVD++ L +
Sbjct: 292 EKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRE 351
Query: 131 TFSAFGVIVTNPKIMRDPD 149
F +G I T+ K+MRD +
Sbjct: 352 LFGPYGTI-TSAKVMRDTN 369
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 107/172 (62%), Gaps = 3/172 (1%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG LDP VTE +L+ELF G V ++ V +D VT GY +V + + D + A++
Sbjct: 54 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 113
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + GKP R+ + +D G N+FI NLD +D K L+DTF+AFG I++ K
Sbjct: 114 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS-CK 172
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG L ++++ V + K +
Sbjct: 173 VAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR 223
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 105/192 (54%), Gaps = 12/192 (6%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L + F G +++ V +D N +GYGFV + + E A+ AIK +N
Sbjct: 145 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVN 203
Query: 88 MIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L K + ++K + K ++ AN ++I NLD ++D+ F FG I T
Sbjct: 204 GMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEI-T 262
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE--R 198
+ + RD + G SRGFGF+++ + E++ AA+E MN + + ++++ V A KK + E R
Sbjct: 263 SATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELR 321
Query: 199 HGTPAERILAAN 210
A R+ A+
Sbjct: 322 KQYEAARLEKAS 333
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 81/165 (49%), Gaps = 29/165 (17%)
Query: 13 LLGQHSAERNQDA----------TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVT 62
+G H +++++ + Y+ NLD ++ ++ ++F + G + + + +D+
Sbjct: 213 FVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQ-E 271
Query: 63 NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DK 105
+G+GFV F + E A A++ +N ++ + + V +A + +K
Sbjct: 272 GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEK 331
Query: 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDT 150
S G NL++ NL D+D++ L + F +G I T+ K+MRD +
Sbjct: 332 ASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTI-TSAKVMRDTNV 375
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 110/179 (61%), Gaps = 3/179 (1%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
SA + A+ YVG LDP VTE +L+ELF G V ++ V +D VT GY +V + +
Sbjct: 45 SASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 104
Query: 78 DADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFG 136
D + A++ LN + GKP R+ + +D G N+FI NLD +D K L+DTF+AFG
Sbjct: 105 DGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFG 164
Query: 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
I++ K+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG L ++++ V + K +
Sbjct: 165 NILS-CKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR 221
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 98/177 (55%), Gaps = 10/177 (5%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L + F G +++ V +D N +GYGFV + + E A+ AIK +N
Sbjct: 143 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVN 201
Query: 88 MIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L K + ++K + K ++ AN ++I N+D +V ++ F FG I T
Sbjct: 202 GMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEI-T 260
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
+ + RD + G SRGFGF+++ + +++ AA++ MN + + +++ V A KK + E
Sbjct: 261 SATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREE 316
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 110/256 (42%), Gaps = 75/256 (29%)
Query: 13 LLGQHSAERNQDA----------TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVT 62
+G H +++++ + Y+ N+D +VT+E ++F + G + + + +D+
Sbjct: 211 FVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQ-E 269
Query: 63 NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DK 105
+G+GFV F + + A A+ +N ++ G+ + V +A + +K
Sbjct: 270 GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEK 329
Query: 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDT--------------- 150
S G NL++ NL DVD++ L + FS FG I T+ K+MRD T
Sbjct: 330 ASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTI-TSAKVMRDTVTTGETSESEKEKEKES 388
Query: 151 -------------------------------GNSRGFGFISYDSFEASDAAIEAMNGQYL 179
G S+GFGF+ + S + + A+ MN + +
Sbjct: 389 NKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMV 448
Query: 180 CNRQITVSYAYKKDTK 195
+ + V+ A +KD +
Sbjct: 449 NGKPLYVALAQRKDVR 464
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 107/172 (62%), Gaps = 3/172 (1%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG LDP VTE +L+ELF G V ++ V +D VT GY +V + + D + A++
Sbjct: 48 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 107
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + GKP R+ + +D G N+FI NLD +D K L+DTF+AFG I++ K
Sbjct: 108 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS-CK 166
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG L ++++ V + K +
Sbjct: 167 VAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR 217
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 98/177 (55%), Gaps = 10/177 (5%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L + F G +++ V +D N +GYGFV + + E A+ AIK +N
Sbjct: 139 FIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVN 197
Query: 88 MIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L K + ++K + K ++ AN ++I NLD ++ E+ F FG I T
Sbjct: 198 GMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEI-T 256
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
+ + RD + G SRGFGF++Y + +++ AA++ MN + + +++ V A KK + E
Sbjct: 257 SATLSRDQE-GKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREE 312
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/260 (20%), Positives = 110/260 (42%), Gaps = 79/260 (30%)
Query: 13 LLGQHSAERNQDA----------TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVT 62
+G H +++++ + Y+ NLD +++EE ++F + G + + + +D+
Sbjct: 207 FVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQ-E 265
Query: 63 NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DK 105
+G+GFV + + + A A+ +N ++ G+ + V +A + +K
Sbjct: 266 GKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEK 325
Query: 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDT--------------- 150
S G NL++ NL D+D++ L + F+ +G I T+ K+MRD +
Sbjct: 326 ASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTI-TSAKVMRDTNIERTQTPDSDKEKKEE 384
Query: 151 -----------------------------------GNSRGFGFISYDSFEASDAAIEAMN 175
G S+GFGF+ + S + + A+ MN
Sbjct: 385 SKEEKPEAAEKTEEAAKESGDDQDKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMN 444
Query: 176 GQYLCNRQITVSYAYKKDTK 195
+ + + + V+ A +KD +
Sbjct: 445 QRMINGKPLYVALAQRKDVR 464
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 105/172 (61%), Gaps = 3/172 (1%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG LDP VTE +L+E+F GPV ++ V +D VT GY +V + + D + A++
Sbjct: 46 ASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 105
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + G+ R+ + +D G N+FI NLD +D K L+DTF+AFG I++ K
Sbjct: 106 HLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILS-CK 164
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
+ D + G SRGF F+ Y + EA+DAAI+A+NG L ++++ V + K +
Sbjct: 165 VGTD-ENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKER 215
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 30/228 (13%)
Query: 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDAD 80
R Q Y+ N+D +VT+ +L GP ++V + +D + +G+GFV + + E A
Sbjct: 223 RAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDE-KGVSKGFGFVNYENHESAR 281
Query: 81 YAIKVLNMIKLYGKPIRVNKA------------SQDKKSLD-----VGANLFIGNLDPDV 123
A+ LN ++ GK + +A S ++K L+ G NL++ NLD +
Sbjct: 282 KAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEW 341
Query: 124 DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ 183
D+ L F AFG I T+ K+MRD D+G SRGFGF+ Y S + + A+ MNG+ + +
Sbjct: 342 DDDRLRAEFEAFGTI-TSSKVMRD-DSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKP 399
Query: 184 ITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQ 231
+ V+ A +KD R A + +Q+++ + +G P +Q
Sbjct: 400 LYVALAQRKDV----------RRQALESQIAQRAQQRMQYGAGFPGMQ 437
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDA 169
V A+L++G LDP V E +L++ F+ G V + ++ RD T S G+ +++Y + +
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGP-VASIRVCRDAVTRRSLGYAYVNYLNAADGER 102
Query: 170 AIEAMNGQYLCNRQITVSYAYK 191
A+E +N + + + ++ +
Sbjct: 103 ALEHLNYSLIKGQSCRIMWSQR 124
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 105/172 (61%), Gaps = 3/172 (1%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG LDP VTE +L+E+F GPV ++ V +D VT GY +V + + D + A++
Sbjct: 46 ASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 105
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + G+ R+ + +D G N+FI NLD +D K L+DTF+AFG I++ K
Sbjct: 106 HLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILS-CK 164
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
+ D + G SRGF F+ Y + EA+DAAI+A+NG L ++++ V + K +
Sbjct: 165 VGTD-ENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKER 215
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 116/228 (50%), Gaps = 30/228 (13%)
Query: 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDAD 80
R Q Y+ N+D +VT+ +L GP ++V + +D + +G+GFV + + E A
Sbjct: 223 RAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDE-KGVSKGFGFVNYENHESAR 281
Query: 81 YAIKVLNMIKLYGKPIRVNKA------------SQDKKSLD-----VGANLFIGNLDPDV 123
A+ LN ++ GK + +A S ++K L+ G NL++ NLD +
Sbjct: 282 KAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEW 341
Query: 124 DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ 183
D+ L F AFG I T+ K+MRD D+G SRGFGF+ Y S + + A+ MNG+ + +
Sbjct: 342 DDDRLRAEFEAFGTI-TSSKVMRD-DSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKP 399
Query: 184 ITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQ 231
+ V+ A +KD R A + +Q+++ + +G P +Q
Sbjct: 400 LYVALAQRKDV----------RRQALESQIAQRAQQRMQYGAGFPGMQ 437
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDA 169
V A+L++G LDP V E +L++ F+ G V + ++ RD T S G+ +++Y + +
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGP-VASIRVCRDAVTRRSLGYAYVNYLNAADGER 102
Query: 170 AIEAMNGQYLCNRQITVSYAYK 191
A+E +N + + + ++ +
Sbjct: 103 ALEHLNYSLIKGQSCRIMWSQR 124
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/172 (38%), Positives = 107/172 (62%), Gaps = 3/172 (1%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG LDP VTE +L+ELF G V ++ V +D VT GY +V + + D + A++
Sbjct: 51 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 110
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + GKP R+ + +D G N+FI NLD +D K L+DTF+AFG I++ K
Sbjct: 111 DLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS-CK 169
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG L ++++ V + K +
Sbjct: 170 VAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR 220
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 106/192 (55%), Gaps = 12/192 (6%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L + F G +++ V +D N +GYGFV + + E A+ AIK +N
Sbjct: 142 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAANNAIKHVN 200
Query: 88 MIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L K + ++K + K ++ AN ++I N+DPDV E+ F FG I T
Sbjct: 201 GMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEI-T 259
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE--R 198
+ + RDP+ G SRGFGF++Y + E++ AA++ M+ + + +++ V A KK + E R
Sbjct: 260 SATLSRDPE-GKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELR 318
Query: 199 HGTPAERILAAN 210
A R+ A+
Sbjct: 319 KQYEAARLEKAS 330
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 71/237 (29%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Y+ N+DP VTEE ++F Q G + + + +D +G+GFV + + E A A+ ++
Sbjct: 235 YIKNIDPDVTEEEFRKIFEQFGEITSATLSRD-PEGKSRGFGFVNYSTHESAQAAVDEMH 293
Query: 88 MIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYD 130
++ + + V +A + +K S G NL++ NL DVD++ L +
Sbjct: 294 DKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRE 353
Query: 131 TFSAFGVIVTNPKIMRD---------PDT------------------------------- 150
F +G I T+ K+MRD PD+
Sbjct: 354 LFGPYGTI-TSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESDEEK 412
Query: 151 ------------GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
G S+GFGF+ + S + + A+ MN + + + + V+ A +KD +
Sbjct: 413 KDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 469
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 106/171 (61%), Gaps = 4/171 (2%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG LDP VTE +L+ELF Q G V ++ V +D +T GY +V + S D + A++
Sbjct: 65 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGEKALE 124
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + G+P R+ + +D G N+FI NLD +D K L+DTF+AFG I++ K
Sbjct: 125 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILS-CK 183
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY-KKD 193
+ +D + GNS+G+GF+ Y++ EA+ AI+ +N L +++ V Y KKD
Sbjct: 184 VAQD-ENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKD 233
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 12/192 (6%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L + F G +++ V +D N +GYGFV + ++E A AIK +N
Sbjct: 156 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAAAQAIKHVN 214
Query: 88 MIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L K + V K + K ++ AN +++ N+ + ++ D F+ +G VT
Sbjct: 215 NMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYG-DVT 273
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE--R 198
+ + RD + G SRGFGF+++ + E + A+E +NG+ + + V A KK + E R
Sbjct: 274 SSSLARDSE-GKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELR 332
Query: 199 HGTPAERILAAN 210
A R+ AN
Sbjct: 333 KSYEAARLEKAN 344
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 63/229 (27%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YV N+ + T+E +LF + G V + + +D +G+GFV F + E A A++ LN
Sbjct: 249 YVKNISLEATDEEFRDLFAKYGDVTSSSLARDS-EGKSRGFGFVNFTTHECAAKAVEELN 307
Query: 88 MIKLYGKPIRVNKASQD-------KKSLDV----------GANLFIGNLDPDVDEKLLYD 130
+ G+ + V +A + +KS + G NL+I NL D+D+ L
Sbjct: 308 GKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLRQ 367
Query: 131 TFSAFGVIVTNPKIMRDPDT---------------------------------------- 150
FS +G I T+ K+MRD T
Sbjct: 368 MFSEYGPI-TSAKVMRDAVTEGSAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTEKKG 426
Query: 151 ----GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
G S+GFGF+ + + + + A+ MN + + + + V+ A +KD +
Sbjct: 427 DRRLGKSKGFGFVCFSNPDDATKAVAEMNQRMIEGKPLYVALAQRKDVR 475
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 117/204 (57%), Gaps = 7/204 (3%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG LDP VTE +L+ELF Q G V ++ V +D VT GY +V + + D + A++
Sbjct: 61 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 120
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + G+P R+ + +D G N+FI NLD +D K L+DTF+AFG I++ K
Sbjct: 121 ELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILS-CK 179
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY-KKD--TKGERHG 200
+ +D + GNS+G+GF+ Y++ EA+ AI+ +NG L +++ V + KKD +K +
Sbjct: 180 VAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMK 238
Query: 201 TPAERILAAN-NPSSQKSRPHTLF 223
I N NP TLF
Sbjct: 239 ANFTNIYVKNINPEVTDDEFRTLF 262
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 94/178 (52%), Gaps = 9/178 (5%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L + F G +++ V +D N +GYGFV + ++E A AIK +N
Sbjct: 152 FIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGN-SKGYGFVHYETDEAASQAIKHVN 210
Query: 88 MIKLYGKPIRVN----KASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L K + V K + K ++ AN +++ N++P+V + F +G VT
Sbjct: 211 GMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYG-DVT 269
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ + RD +TG SRGFGF+++ S E + A++ +N + + + V A KK + E
Sbjct: 270 SSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEE 327
Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 77/140 (55%), Gaps = 18/140 (12%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YV N++P+VT++ LF + G V + + +D+ T +G+GFV F S EDA A++ LN
Sbjct: 245 YVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELN 304
Query: 88 MIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYD 130
+ +G+ + V +A Q+K S G NL+I NLD +VD++ L
Sbjct: 305 EKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQ 364
Query: 131 TFSAFGVIVTNPKIMRDPDT 150
FS FG I T+ K+MRD T
Sbjct: 365 LFSEFGPI-TSAKVMRDSIT 383
Score = 40.4 bits (93), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVT 62
Q A + Q Y+ NLD +V +E L +LF + GP+ + V +D +T
Sbjct: 337 QEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 110/177 (62%), Gaps = 9/177 (5%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L VTE +L+E F AGPV+++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N + GKPIR+ + +D +KS VG N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKS-GVG-NVFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 197
+ D S+G+ F+ +++ EA+D AIE MNG L +R++ V + +K+ + E
Sbjct: 129 KVVC---DENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 101/172 (58%), Gaps = 11/172 (6%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GY FV F ++E AD AI+ +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYAFVHFETQEAADKAIEKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N +VD++ L + FS FG ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+MRDP+ G S+GFGF+SY+ E ++ A+E MNG+ + + I V A KK
Sbjct: 220 -VKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 103/194 (53%), Gaps = 21/194 (10%)
Query: 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78
A+ + Y+ N +V +E L ELF Q G ++V V +D +G+GFV + ED
Sbjct: 185 AKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHED 243
Query: 79 ADYAIKVLNMIKLYGKPIRVNKA-----------------SQDKKSLDVGANLFIGNLDP 121
A+ A++ +N ++ GK I V +A Q++ S G NL+I NLD
Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDD 303
Query: 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181
+D++ L FS FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + +
Sbjct: 304 TIDDEKLRKEFSPFGSI-TSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS 360
Query: 182 RQITVSYAYKKDTK 195
+ + V+ A +K+ +
Sbjct: 361 KPLYVALAQRKEER 374
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 133 bits (334), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 105/165 (63%), Gaps = 3/165 (1%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG LDP VTE +L+ELF G V ++ V +D VT GY +V + S ED + A++
Sbjct: 48 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALE 107
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + GKP R+ + +D G N+FI NLD +D K L+DTF+AFG I++ K
Sbjct: 108 ELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILS-CK 166
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188
+ +D + GNS+G+GF+ Y++ EA++ AI+ +NG L +++ V +
Sbjct: 167 VAQD-ELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGH 210
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 94/180 (52%), Gaps = 16/180 (8%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L + F G +++ V +D + N +GYGFV + + E A+ AIK +N
Sbjct: 139 FIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGN-SKGYGFVHYETAEAANNAIKHVN 197
Query: 88 MIKLYGKPI----------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGV 137
+ L K + R++K + K + N+++ N+D DV ++ + F G
Sbjct: 198 GMLLNEKKVFVGHHIPKKERMSKFEEMKANF---TNIYVKNIDLDVTDEDFRELFEKHGD 254
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
I T+ I RD D G SRGFGF++Y EA+ A++ +N +++ V A KK + E
Sbjct: 255 I-TSASIARD-DQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREE 312
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 99/236 (41%), Gaps = 69/236 (29%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YV N+D VT+E ELF + G + + + +D +G+GFV + E A A+ LN
Sbjct: 232 YVKNIDLDVTDEDFRELFEKHGDITSASIARDD-QGKSRGFGFVNYIRHEAAAVAVDHLN 290
Query: 88 MIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYD 130
I+ G+ + V +A + +K+S G NL+I NL+ DVD++ L D
Sbjct: 291 DIEFKGQKLYVGRAQKKHEREEELRKQYEAARLEKQSKYQGVNLYIKNLNDDVDDEKLRD 350
Query: 131 TFSAFGVIVTNPKIMRD------------------------------------PDT---- 150
F+ FG I + I+RD DT
Sbjct: 351 MFTPFGTITSAKVILRDEEKKDEEEKEVKEEKKEDEKKEDEEAKEGSSSEQNGEDTKAGD 410
Query: 151 -----------GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
G S+GFGF+ + + + + A+ MN + + + + V+ A +KD +
Sbjct: 411 KVTIKGEKKILGKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVR 466
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 132 bits (333), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 109/168 (64%), Gaps = 3/168 (1%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
++ +A+ YVG LDP VTE +L+E+F GPV +V V +D +T GY +V F ++ D
Sbjct: 41 DQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADG 100
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVI 138
A++ LN + +P R+ + +D GA N++I NLDP +D K L+DTFSAFG I
Sbjct: 101 IRALEELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQI 160
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186
++ KI D + GNSRGFGF+ Y+S E++++AI+ +NG L ++++ V
Sbjct: 161 LS-CKIATD-EFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFV 206
Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 92/196 (46%), Gaps = 26/196 (13%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLH---QGYGFVEFRSE 76
++N ++ NL ++TE EL + G +V++ TN G+GFV+++
Sbjct: 222 QKNSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLS----TNDEGKPTGFGFVDYKEH 277
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNL 119
+ A AI L+ + G + +A + + D G NL+I NL
Sbjct: 278 DVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNL 337
Query: 120 DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 179
D +D+ L F+ G I T+ K+M D + G S+GFGF+ Y S E + A+ MN + +
Sbjct: 338 DDTIDDDKLRAEFAPHGTI-TSAKVMVD-EAGKSKGFGFVCYSSPEEATKAVTEMNHRLV 395
Query: 180 CNRQITVSYAYKKDTK 195
+ + V A +KD +
Sbjct: 396 AGKPLYVVLAQRKDVR 411
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 122/326 (37%), Gaps = 56/326 (17%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Y+ NLDP + + L + F G +++ + D N +G+GFV + S E A+ AI+ +N
Sbjct: 137 YIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGN-SRGFGFVHYESAESAESAIQHVN 195
Query: 88 MIKLYGKPI----------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGV 137
+ L K + R+ + K S N+FI NL ++ E + + FG
Sbjct: 196 GMLLNDKKVFVGPHVPKSDRMQSFEEQKNSF---TNVFIKNLGTEITEAEFEELVNKFGE 252
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
T+ + D G GFGF+ Y + + AI+ ++ ++ A KK + +
Sbjct: 253 --TSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERAD 310
Query: 198 --RHGTPAERILAAN--------------NPSSQKSR----PHTLFASGPPSLQNAPQAN 237
R A R+ N K R PH S + A ++
Sbjct: 311 ELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKSK 370
Query: 238 GTVGGPVPPRPYANGAASGPISA-----------------VRPPPPPPQAAAFPPMQVAG 280
G G P A ++ VR Q A M++
Sbjct: 371 G-FGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQRKDVRRSQLQQQIQAKNQMRLQQ 429
Query: 281 QAAWQGQP-QHIGQ-GVPQPVMPPPM 304
QAA G P Q++G GV P P M
Sbjct: 430 QAAAGGLPGQYMGNPGVFYPGQPGFM 455
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 131 bits (330), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 110/179 (61%), Gaps = 8/179 (4%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D T GY ++ F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N + G+PIR+ + +D +KS VG N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKS-GVG-NVFIKNLDESIDNKALYDTFSAFGNILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHG 200
+ D SRG+GF+ +++ EA++ AI+ MNG L +R++ V + + + +G
Sbjct: 129 KVVC---DEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYG 184
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 103/179 (57%), Gaps = 12/179 (6%)
Query: 27 AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL 86
++ NLD + + L++ F G +++ V D + +GYGFV F ++E A+ AI+ +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158
Query: 87 NMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIV 139
N + L + + V S+ ++ L+ GA N++I N D+D+K L + FSAFG +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGE 197
+ K+M D DTG SRGFGF++Y + E + A+ MNG+ + R I V A K+ + +GE
Sbjct: 219 S-VKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGE 275
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 101/197 (51%), Gaps = 21/197 (10%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
++ A+ + Y+ N + ++ L E+F G ++V V D T +G+GFV + +
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGRSRGFGFVNYGN 240
Query: 76 EEDADYAIKVLNMIKLYGKPIRVNKA-----------------SQDKKSLDVGANLFIGN 118
E+A A+ +N ++ G+ I V +A Q++ + G NL++ N
Sbjct: 241 HEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKN 300
Query: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 178
LD +D+ L FS +G I T+ K+M + G+S+GFGF+ + S E + A+ MNG+
Sbjct: 301 LDDGIDDDRLRKEFSPYGTI-TSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 179 LCNRQITVSYAYKKDTK 195
+ + + V+ A +K+ +
Sbjct: 358 VSTKPLYVALAQRKEER 374
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 131 bits (329), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/177 (38%), Positives = 111/177 (62%), Gaps = 9/177 (5%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L VTE +L+E F AGP++++ V +D +T GY +V F+ DA+ A+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N + G+P+R+ + +D +KS VG N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKS-GVG-NIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 197
+ D S+G+GF+ +++ EA++ AI+ MNG L +R++ V + +K+ + E
Sbjct: 129 KVVC---DENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAE 182
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 21/186 (11%)
Query: 27 AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL 86
Y+ N + +E L E+F + GP ++V V D +G+GFV F EDA A+ +
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDD-NGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 87 NMIKLYGKPIRVNKA-----------------SQDKKSLDVGANLFIGNLDPDVDEKLLY 129
N + GK + V +A QD+ + G NL++ NLD +D++ L
Sbjct: 252 NGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLR 311
Query: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189
F FG I T+ K+M + G S+GFGF+ + S E + A+ MNG+ + + + V+ A
Sbjct: 312 KEFLPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 190 YKKDTK 195
+K+ +
Sbjct: 369 QRKEER 374
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 97/172 (56%), Gaps = 11/172 (6%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L++ F G +++ V D N +GYGFV F ++E A+ AI +N
Sbjct: 102 FIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIDKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V + S+ ++ ++GA N++I N D++++ L + F +G ++
Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D D G S+GFGF+S++ E + A++ MNG+ + + + V A KK
Sbjct: 220 -VKVMTD-DNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 107/171 (62%), Gaps = 4/171 (2%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG LDP VTE +L+ELF G V ++ V +D VT GY +V + + D + A++
Sbjct: 55 ASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALE 114
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + G+P R+ + +D G N+FI NLD +D K L+DTF+AFG I++ K
Sbjct: 115 DLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS-CK 173
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY-KKD 193
+ +D + GNS+G+GF+ Y++ EA+ AI+ +NG L ++++ V + KKD
Sbjct: 174 VAQD-EFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKD 223
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 11/192 (5%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L + F G +++ V +D N +GYGFV + + E A AIK +N
Sbjct: 146 FIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGN-SKGYGFVHYETAEAAQNAIKHVN 204
Query: 88 MIKLYGKPIRVNK--ASQDKKSL--DVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L K + V A +D++S ++ AN +++ N+D D E+ D F FG I T
Sbjct: 205 GMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEI-T 263
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE--R 198
+ + RD ++G SRGFGF+++ S + + AA+EA+N + +++ V A KK + E R
Sbjct: 264 SATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELR 323
Query: 199 HGTPAERILAAN 210
A RI A+
Sbjct: 324 KQYEAARIEKAS 335
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 28/162 (17%)
Query: 13 LLGQHSAERNQDA----------TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVT 62
+G H A++++ + YV N+D TEE +LF + G + + + +D +
Sbjct: 214 FVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAES 273
Query: 63 NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ-----------------DK 105
+G+GFV F S ++A A++ LN G+ + V +A + +K
Sbjct: 274 GKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEK 333
Query: 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 147
S G NL+I NL D+D++ L + FS++G I T+ K+MRD
Sbjct: 334 ASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTI-TSAKVMRD 374
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 110/179 (61%), Gaps = 8/179 (4%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ Y+G+L P VTE +L+E F AGP++++ V +D T GY ++ F+ DA+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N + G+PIR+ + +D +KS VG N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKS-GVG-NVFIKNLDDSIDNKALYDTFSAFGDILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHG 200
+ D SRG+GF+ +++ EA++ AI+ MNG L +R++ V + + + +G
Sbjct: 129 KVVC---DEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYG 184
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 103/179 (57%), Gaps = 12/179 (6%)
Query: 27 AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL 86
++ NLD + + L++ F G +++ V D + +GYGFV F ++E A+ AI+ +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGS--RGYGFVHFETQEAANRAIQTM 158
Query: 87 NMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIV 139
N + L + + V S+ ++ L+ GA N++I N D+D+K L + FSAFG +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTL 218
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK-DTKGE 197
+ K+M D ++G SRGFGF++Y + E + A+ MNG+ + R + V A K+ + +GE
Sbjct: 219 S-VKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGE 275
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 101/197 (51%), Gaps = 21/197 (10%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
++ A+ + Y+ N + ++ L E+F G ++V V D + +G+GFV + +
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGN 240
Query: 76 EEDADYAIKVLNMIKLYGKPIRVNKA-----------------SQDKKSLDVGANLFIGN 118
E+A A+ +N ++ G+ + V +A Q++ + G NL++ N
Sbjct: 241 HEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKN 300
Query: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 178
LD +D+ L FS +G I T+ K+M + G+S+GFGF+ + S E + A+ MNG+
Sbjct: 301 LDDGIDDDRLRKEFSPYGTI-TSTKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 179 LCNRQITVSYAYKKDTK 195
+ + + V+ A +K+ +
Sbjct: 358 VSTKPLYVALAQRKEER 374
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 111/190 (58%), Gaps = 11/190 (5%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ V +D T GY ++ F+ DA+ A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N L G+PIR+ + +D +KS VG N+FI NL+ +D K LYDTFS FG I++
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKS-GVG-NIFIKNLEDSIDNKALYDTFSTFGNILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGT 201
D SRGFGF+ +++ EA+ AI MNG L +R++ V + +K ++ ER
Sbjct: 129 KVAC---DEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGH-FK--SRREREAE 182
Query: 202 PAERILAANN 211
R L N
Sbjct: 183 LGARALEFTN 192
Score = 94.7 bits (234), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 101/186 (54%), Gaps = 14/186 (7%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL+ + + L++ F G +++ V D + +G+GFV F + E A AI +N
Sbjct: 102 FIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGS--RGFGFVHFETHEAAQQAINTMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L + + V S+ ++ ++GA N+++ NL DVDE+ L D FS FG +++
Sbjct: 160 GMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHG 200
K+MRD ++G+SR FGF++++ E + A+ MNG+ + R + YA + + ER
Sbjct: 220 -VKVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL---YAGRAQKRVERQN 274
Query: 201 TPAERI 206
R
Sbjct: 275 ELKRRF 280
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 21/185 (11%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YV NL V E+ L +LF Q G +++V V +D + + +GFV F E+A A+ +N
Sbjct: 194 YVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 88 MIKLYGKPI-----------------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYD 130
++ G+ + R + QD+ G NL++ NLD +D+ L
Sbjct: 253 GKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRK 312
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
FS +GVI T+ K+M + G+S+GFGF+ + S E + A+ MNG+ + + + V+ A
Sbjct: 313 EFSPYGVI-TSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369
Query: 191 KKDTK 195
+K+ +
Sbjct: 370 RKEER 374
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 109/179 (60%), Gaps = 8/179 (4%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ Y+G+L P VTE +L+E F AGP++++ V +D T Y ++ F+ DA+ A+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N + G+PIR+ + +D +KS VG N+FI NLD +D K LYDTFSAFG I++
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKS-GVG-NVFIKNLDESIDNKALYDTFSAFGNILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHG 200
+ D SRG+GF+ +++ EA++ AI+ MNG L +R++ V + + + +G
Sbjct: 129 KVVC---DEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYG 184
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 98/173 (56%), Gaps = 11/173 (6%)
Query: 27 AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL 86
++ NLD + + L++ F G +++ V D + +GYGFV F + E A+ AI+ +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS--RGYGFVHFETHEAANRAIQTM 158
Query: 87 NMIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIV 139
N + L + + V S+ ++ L+ GA N++I N D+D+K L + FSAFG +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
+ K+M D D+G SRGFGF++Y + E + A+ MNG+ + R I V A K+
Sbjct: 219 S-VKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 101/197 (51%), Gaps = 21/197 (10%)
Query: 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
++ A+ + Y+ N + ++ L E+F G ++V V D + +G+GFV + +
Sbjct: 182 EYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGRSRGFGFVNYGN 240
Query: 76 EEDADYAIKVLNMIKLYGKPI-------RVNKASQDKKSLDV----------GANLFIGN 118
E+A A+ +N ++ G+ I R+ + S+ K+ + G NL++ N
Sbjct: 241 HEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKN 300
Query: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 178
LD +D+ L F +G I T+ K+M + G+S+GFGF+ + S E + A+ MNG+
Sbjct: 301 LDDGIDDDRLRKEFLPYGTI-TSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 179 LCNRQITVSYAYKKDTK 195
+ + + V+ A +K+ +
Sbjct: 358 VSTKPLYVALAQRKEER 374
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 129 bits (325), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 76/196 (38%), Positives = 114/196 (58%), Gaps = 8/196 (4%)
Query: 2 TTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRV 61
T+ P A G+ S A+ YVG L+P V E L+E+F G V ++ V +D V
Sbjct: 44 TSSSVPADSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRVCRDAV 103
Query: 62 TNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGN 118
+ GY +V + ED + AI+ LN + G+P R+ + +D ++S D N+FI N
Sbjct: 104 SKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGD--GNIFIKN 161
Query: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 178
L P +D K L+DTFSAFG I++ K+ D D G S+ FGF+ Y++ EA+ AAIE++NG
Sbjct: 162 LHPAIDNKALHDTFSAFGKILS-VKVATD-DLGQSKCFGFVHYETEEAAQAAIESVNGML 219
Query: 179 LCNRQITV-SYAYKKD 193
L +R++ V + KKD
Sbjct: 220 LNDREVYVGKHVSKKD 235
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 98/343 (28%), Positives = 148/343 (43%), Gaps = 79/343 (23%)
Query: 14 LGQHSAERNQDA----------TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTN 63
+G+H +++++++ YV N+D TE+ ELF G + ++Y+ KD
Sbjct: 227 VGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKITSIYLEKD-AEG 285
Query: 64 LHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV------------- 110
+G+GFV F E A A++ LN ++ G+ I V +A + ++ +
Sbjct: 286 KSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKL 345
Query: 111 ----GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEA 166
G NLF+ NLD +D + L + F FG I T+ K+M D D G S+GFGF+ + + E
Sbjct: 346 SKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTI-TSSKVMVD-DAGKSKGFGFVCFSTPEE 403
Query: 167 SDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASG 226
+ AI MN + + + + V+ A +KD R ++I A N
Sbjct: 404 ATKAITEMNQRMVNGKPLYVALAQRKDV---RRSQLEQQIQARNQ--------------- 445
Query: 227 PPSLQNAPQANGTVGGPVPPRPYA-------NGAASGPISAVRPPPPPPQAAAFPPMQVA 279
+QNA A G G +PP Y NG + P P P PQ M+
Sbjct: 446 -MRMQNAAAAGGLPGQFMPPMFYGQQGFFPPNGRGNAPF-----PGPNPQMM----MRGR 495
Query: 280 GQ---AAW-----QGQPQHIGQGVPQPVMPPPMQFRPPPNMPP 314
GQ W GQP VP MPP Q NM P
Sbjct: 496 GQPFPEQWPRPGPNGQP------VPVYGMPPQFQDFNGQNMRP 532
Score = 88.2 bits (217), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 102/187 (54%), Gaps = 10/187 (5%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
SA R+ D ++ NL P + + L + F G +++V V D + + +GFV + +EE
Sbjct: 148 SARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQ-SKCFGFVHYETEE 206
Query: 78 DADYAIKVLNMIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYD 130
A AI+ +N + L + + V+K ++ K ++ AN +++ N+D EK +
Sbjct: 207 AAQAAIESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEE 266
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
F+ FG I T+ + +D + G S+GFGF++++ EA+ A+E +N + + ++I V A
Sbjct: 267 LFAPFGKI-TSIYLEKDAE-GKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQ 324
Query: 191 KKDTKGE 197
KK + E
Sbjct: 325 KKRERTE 331
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 112/177 (63%), Gaps = 9/177 (5%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P VTE +L+E F AGP++++ + +D +T+ Y +V F+ +DA++A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
+N + GKP+R+ + +D +KS VG N+F+ NLD ++ K LYDT SAFG I++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKS-GVG-NIFVKNLDKSINNKALYDTVSAFGNILSC 128
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGE 197
+ D S+G+GF+ +++ EA++ AI+ MNG L R++ V + +K+ + E
Sbjct: 129 NVVC---DENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 99/172 (57%), Gaps = 11/172 (6%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
+V NLD + + L++ G +++ V D N +GYGFV F + E A+ AIK +N
Sbjct: 102 FVKNLDKSINNKALYDTVSAFGNILSCNVVCDE--NGSKGYGFVHFETHEAAERAIKKMN 159
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L G+ + V + S+ ++ ++GA N++I N D+D++ L D F FG ++
Sbjct: 160 GMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
K+M D ++G S+GFGF+S++ E + A++ MNG+ L +QI V A KK
Sbjct: 220 -VKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 119/251 (47%), Gaps = 38/251 (15%)
Query: 13 LLGQHSAERNQDA----------TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVT 62
+GQ + + ++A Y+ N + +E L +LF + GP ++V V D +
Sbjct: 169 FVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-S 227
Query: 63 NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-----------------SQDK 105
+G+GFV F EDA A+ +N +L GK I V +A QD+
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDR 287
Query: 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFE 165
+ NL++ NLD +D++ L FS FG I T+ K+M + G S+GFGF+ + S E
Sbjct: 288 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTI-TSAKVMMEG--GRSKGFGFVCFSSPE 344
Query: 166 ASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPA----ERILAANNPSSQKSRPHT 221
+ A+ MNG+ + + + V+ A +K+ ER +R+ + +Q++ P
Sbjct: 345 EATKAVTEMNGRIVATKPLYVALAQRKE---ERQAYLTNEYMQRMASVRAVPNQRAPPSG 401
Query: 222 LFASGPPSLQN 232
F + P QN
Sbjct: 402 YFMTAVPQTQN 412
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 103/172 (59%), Gaps = 3/172 (1%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG LDP VTE +L+ELF G V ++ V +D VT GY +V + + A+
Sbjct: 42 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALD 101
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + GKP R+ + +D G N+FI NLD +D K L+DTF+AFG I++ K
Sbjct: 102 ELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS-CK 160
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
+ +D + G S+G+GF+ Y++ EA++ AI+ +NG L ++++ V + K +
Sbjct: 161 VAQD-EFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDR 211
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 101/177 (57%), Gaps = 10/177 (5%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L + F G +++ V +D + +GYGFV + + E A+ AIK +N
Sbjct: 133 FIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GVSKGYGFVHYETAEAANNAIKHVN 191
Query: 88 MIKLYGKPI----RVNKASQDKKSLDVGAN---LFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L K + ++K + K ++ AN ++I N+DP+V+++ F FG I T
Sbjct: 192 GMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEI-T 250
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
+ + RD + G SRGFGF+++ + E++ AA+E MN + + ++++ V A KK + E
Sbjct: 251 SATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREE 306
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 69/235 (29%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Y+ N+DP+V +E +LF + G + + + +D +G+GFV F + E A A++ +N
Sbjct: 226 YIKNIDPEVEDEEFRKLFEKFGEITSATLSRDS-EGKSRGFGFVNFSTHESAQAAVEEMN 284
Query: 88 MIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYD 130
++ + + V +A + +K S G NL++ NL DVD+ L +
Sbjct: 285 DKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRE 344
Query: 131 TFSAFGVIVTNPKIMRD--------PDT-------------------------------- 150
F +G I T+ K+MRD P++
Sbjct: 345 LFGPYGTI-TSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKKE 403
Query: 151 ----------GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
G S+GFGF+ + S + + A+ MN + + + + V+ A +KD +
Sbjct: 404 AEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVR 458
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 125 bits (314), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 106/173 (61%), Gaps = 4/173 (2%)
Query: 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
+++ YVG+LDP V E L +LF Q PV N+ V +D +T+ GY +V F + EDA A+
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAM 116
Query: 84 KVLNMIKLYGKPIRVNKASQD-KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 142
+ LN + +PIR+ +++D L N+FI NLD +D K LY+TFS+FG I++
Sbjct: 117 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILS-C 175
Query: 143 KIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
K+ D G S+G+GF+ ++ E + AAI+ +NG L ++Q+ V + ++ +
Sbjct: 176 KVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 227
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 98/190 (51%), Gaps = 12/190 (6%)
Query: 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKV 85
++ NLD + + L+E F G +++ V D V +GYGFV+F EE A AI
Sbjct: 147 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDK 205
Query: 86 LNMIKLYGKPIRVNK--ASQDKKSLDVGA-----NLFIGNLDPDVDEKLLYDTFSAFGVI 138
LN + L K + V QD+ + GA N+++ NL ++ + L TF +G I
Sbjct: 206 LNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDI 265
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE- 197
++ +M+D +GNSR FGF+++ S EA+ A+E MNG L + V A KK + E
Sbjct: 266 -SSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEE 323
Query: 198 -RHGTPAERI 206
R ERI
Sbjct: 324 LRRKFEQERI 333
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 102/188 (54%), Gaps = 22/188 (11%)
Query: 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKV 85
YV NL ++T++ L + F + G + + V KD+ N + +GFV F S E A A++
Sbjct: 240 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN-SRSFGFVNFVSPEAAAVAVEK 298
Query: 86 LNMIKLYGKPI----RVNKASQDKKSLDV--------------GANLFIGNLDPDVDEKL 127
+N I L G+ + R K S ++ L G+NL++ NLD V+++
Sbjct: 299 MNGISL-GEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 128 LYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187
L + FS +G VT+ K+M + G SRGFGF++Y + E + A++ MNG+ + + + V+
Sbjct: 358 LKEMFSEYGN-VTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVA 415
Query: 188 YAYKKDTK 195
A +K+ +
Sbjct: 416 LAQRKEER 423
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79
E+ Q + Y+ NLD V +E L E+F + G V + V + L +G+GFV + + E+A
Sbjct: 337 EKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEA 395
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDKK 106
A+K +N + KP+ V A + ++
Sbjct: 396 LLAMKEMNGKMIGRKPLYVALAQRKEE 422
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 125 bits (313), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 110/184 (59%), Gaps = 4/184 (2%)
Query: 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
+++ Y G+LDP+VTE L++LF VV+V V +D+ GY ++ F + DA A+
Sbjct: 48 NSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDAYRAM 106
Query: 84 KVLNMIKLYGKPIRVNKASQD-KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 142
+ LN L+ +PIR+ +++D L N+FI NLD +D K L++TFS+FG I++
Sbjct: 107 EALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILS-C 165
Query: 143 KIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTP 202
K+ D TG S+G+GF+ ++ E++ AAI+ +NG + ++Q+ V + ++ + TP
Sbjct: 166 KVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARDENTP 224
Query: 203 AERI 206
R
Sbjct: 225 TPRF 228
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 12/188 (6%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD + + L+E F G +++ V D VT +GYGFV+F EE A AI LN
Sbjct: 139 FIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 88 MIKLYGKPIRVNK-ASQDKKSLDVGA------NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ + K + V + +++ D N+++ NL ++ E L TF FGVI +
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI-S 256
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE--R 198
+ +MRD +GNSR FGF++++ EA+ +A+E MNG L + + V A KK + E R
Sbjct: 257 SAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELR 315
Query: 199 HGTPAERI 206
ERI
Sbjct: 316 RKFEQERI 323
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 99/186 (53%), Gaps = 20/186 (10%)
Query: 27 AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL 86
YV NL ++ E+ L + F + G + + V +D+ N + +GFV F E A A++ +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNFECTEAAASAVEKM 289
Query: 87 NMIKLYGKPI---RVNKASQDKKSL--------------DVGANLFIGNLDPDVDEKLLY 129
N I L + R K S+ ++ L GANL++ NLD VD++ L
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLK 349
Query: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189
+ FS +G VT+ K+M +P G SRGFGF++Y + E + A+ MNG+ + + + ++ A
Sbjct: 350 EMFSEYGN-VTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 190 YKKDTK 195
+K+ +
Sbjct: 408 QRKEDR 413
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTN---LHQGYGFVEFRSE 76
E++Q A Y+ NLD V +E L E+F + G V + V + N + +G+GFV + +
Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKV----MLNPQGMSRGFGFVAYSNP 382
Query: 77 EDADYAIKVLNMIKLYGKPIRVNKA--SQDKKS 107
E+A A+ +N + KP+ + A +D+++
Sbjct: 383 EEALRALSEMNGKMIGRKPLYIALAQRKEDRRA 415
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 103/172 (59%), Gaps = 7/172 (4%)
Query: 20 ERNQDATA----YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75
E NQ T YVG+LDP V+E L+++F G V ++ V +D +T GY +V F
Sbjct: 26 EENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFND 85
Query: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSA 134
+ A AI+ LN + GK R+ + +D GA N+FI NL PD+D K LYDTFS
Sbjct: 86 HDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSV 145
Query: 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186
FG I+++ K+ D +TG S+GFG++ ++ E++ AI+A+NG L ++I V
Sbjct: 146 FGNILSS-KVATD-ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYV 195
Score = 89.4 bits (220), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 25/210 (11%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRV-TNLHQGYGFVEFRSEEDADYAI 83
Y+ N++ + T++ EL + G +V + +R ++G+GFV F + EDA +
Sbjct: 216 TNVYIKNINTETTDKEFEELVAKFGKTDSVVL--ERTPEGENKGFGFVNFVNHEDAVKCV 273
Query: 84 KVLNMIKLYGKPIRVNKASQD-------KKSLDV----------GANLFIGNLDPDVDEK 126
+ LN + G+P+ VN+A + KK + G NLFI NLD +D+K
Sbjct: 274 EELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDK 333
Query: 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186
L + F+ +G I T+ K+M + G S+GFGF+ + + E + AI N Q + + + V
Sbjct: 334 KLEEEFAPYGTI-TSAKVMT-TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYV 391
Query: 187 SYAYKKDTKGERHGTPAERILAANNPSSQK 216
+ A +KD R A++I A N Q+
Sbjct: 392 AIAQRKDV---RRSQLAQQIQARNQMRFQQ 418
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 101 ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFIS 160
+++ +S V A+L++G+LDP V E LYD FS G V++ ++ RD T S G+ +++
Sbjct: 24 TNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGA-VSSIRVCRDAITKTSLGYAYVN 82
Query: 161 YDSFEASDAAIEAMN 175
++ +A+ AIE +N
Sbjct: 83 FNDHDAAKTAIEKLN 97
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 125/228 (54%), Gaps = 9/228 (3%)
Query: 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADY 81
N A+ YVG+L+P V+E L+++F G V ++ V +D +T GY +V F E
Sbjct: 35 NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRK 94
Query: 82 AIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
AI+ LN + G+ R+ + +D G+ N+FI NL PD+D K LYDTFS FG I++
Sbjct: 95 AIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILS 154
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKDTKGERH 199
+ KI D + G S+GFGF+ ++ A+ AI+A+NG L ++I V+ + +K+ +
Sbjct: 155 S-KIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLE 212
Query: 200 GTPAERI-LAANNPSSQKSRP--HTLFASGPPSLQNAPQ--ANGTVGG 242
T A L N +S+ + LFA P + + + A+G + G
Sbjct: 213 ETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKG 260
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 109/206 (52%), Gaps = 23/206 (11%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YV N++ + T+E ELF + GP+V+ + KD L +G+GFV + EDA A++ LN
Sbjct: 222 YVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKL-KGFGFVNYEKHEDAVKAVEALN 280
Query: 88 MIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLYD 130
+L G+ + V +A + + + V G NLF+ NLD VD++ L +
Sbjct: 281 DSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEE 340
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
F+ +G I T+ K+MR + G S+GFGF+ + + E + AI N Q + + + V+ A
Sbjct: 341 EFAPYGTI-TSAKVMR-TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Query: 191 KKDTKGERHGTPAERILAANNPSSQK 216
+KD R A++I A N Q+
Sbjct: 399 RKDV---RRSQLAQQIQARNQMRYQQ 421
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 10/175 (5%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL P + + L++ F G +++ + D +G+GFV F E A AI LN
Sbjct: 129 FIKNLHPDIDNKALYDTFSVFGDILSSKIATDE-NGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 88 MIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L G+ I R + SQ +++ NL++ N++ + ++ + F+ FG IV+
Sbjct: 188 GMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVS 247
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195
+ +D D G +GFGF++Y+ E + A+EA+N L ++ V A KK+ +
Sbjct: 248 -ASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER 300
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 103/169 (60%), Gaps = 7/169 (4%)
Query: 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADY 81
N +A+ YVG LDP +TE LL+++F GP+ ++ V +D VT GY +V + E
Sbjct: 47 NNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKK 106
Query: 82 AIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
AI+ LN ++ G+P R+ + +D G+ N+FI NL P +D K L++TFS FG +++
Sbjct: 107 AIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLS 166
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDA--AIEAMNGQYLCNRQITVS 187
K+ D + GNSRGFGF+ + E SDA AIEA+NG + ++ V+
Sbjct: 167 -CKVALD-ENGNSRGFGFVHFK--EESDAKDAIEAVNGMLMNGLEVYVA 211
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 23/200 (11%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
YV N+D + T+E +LF Q G +V+ + KD +G+GFV F A A++ LN
Sbjct: 234 YVKNIDVETTDEEFEQLFSQYGEIVSAALEKD-AEGKPKGFGFVNFVDHNAAAKAVEELN 292
Query: 88 MIKLYGKPIRVNKASQ-----------------DKKSLDVGANLFIGNLDPDVDEKLLYD 130
+ + + V +A + +K + G NLFI NLD +D++ L +
Sbjct: 293 GKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKE 352
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
F+ +G I T+ ++MRD + GNS+GFGF+ + S E + A+ N Q + + + V+ A
Sbjct: 353 EFAPYGTI-TSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQ 410
Query: 191 KKDTKGERHGTPAERILAAN 210
+KD R A++I A N
Sbjct: 411 RKDV---RRSQLAQQIQARN 427
Score = 79.3 bits (194), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 92/180 (51%), Gaps = 16/180 (8%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
++ NL P + + L E F G V++ V D N +G+GFV F+ E DA AI+ +N
Sbjct: 141 FIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGN-SRGFGFVHFKEESDAKDAIEAVN 199
Query: 88 MIKLYG----------KPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGV 137
+ + G K R++K + K + N+++ N+D + ++ FS +G
Sbjct: 200 GMLMNGLEVYVAMHVPKKDRISKLEEAKANF---TNIYVKNIDVETTDEEFEQLFSQYGE 256
Query: 138 IVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
IV+ + +D + G +GFGF+++ A+ A+E +NG+ ++ + V A KK + E
Sbjct: 257 IVS-AALEKDAE-GKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAE 314
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 104/165 (63%), Gaps = 7/165 (4%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
++ YVG+L P+V+E+ L+E+F Q G V N+ V +D T Y +V + + DA+ A+
Sbjct: 10 SSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALD 69
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
LN + GK R+ + +D +KS VG N+FI NLD +D K LYDTFSAFG I++
Sbjct: 70 TLNNTPIRGKACRIMWSQRDPSLRKS-GVG-NVFIKNLDKGIDHKALYDTFSAFGNILS- 126
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186
K++ D D +S+GFGF+ Y++ E++D AI +NG + +++ V
Sbjct: 127 CKVVTD-DGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFV 170
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 12/181 (6%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
+ NL V + L EL Q G + N+ + D +G+GF F S E A ++
Sbjct: 188 TNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADD-KGKSKGFGFANFESAEAAKNVVE 246
Query: 85 VLNMIKLYGKPI-------RVNKASQDKKSLDV---GANLFIGNLDPDVDEKLLYDTFSA 134
N +GKPI ++ + ++ K + + G NL+I N+D +D L + FS
Sbjct: 247 NENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQ 306
Query: 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDT 194
FG I T+ +M+D S+GFGF+ Y + + + A+ MNG+ + + + V+ A +KD
Sbjct: 307 FGTI-TSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDI 365
Query: 195 K 195
+
Sbjct: 366 R 366
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDA 169
+ ++L++G+L P+V E+ L++ F+ G +V+N ++ RD +T S + +++Y + ++
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVG-LVSNIRVCRDTNTRRSLSYAYVNYYNGADAER 66
Query: 170 AIEAMN 175
A++ +N
Sbjct: 67 ALDTLN 72
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 16 QHSAE-RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74
+H+ E + Q Y+ N+D + + L E+F Q G + + V KD +G+GFV +
Sbjct: 274 KHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYT 333
Query: 75 SEEDADYAIKVLNMIKLYGKPIRV 98
+ ++A A+ +N + KP+ V
Sbjct: 334 APDEATRAVTEMNGRMIGTKPLYV 357
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/164 (38%), Positives = 103/164 (62%), Gaps = 5/164 (3%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L V E L++ F AGPV+++ V +D +T GY +V F+ DA+ A+
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 85 VLNMIKLYGKPIRVNKASQD--KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 142
+N + KPIR+ + +D + VG N+FI NLD +D K +YDTFSAFG I++
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVG-NVFIKNLDRAIDNKAIYDTFSAFGNILS-C 119
Query: 143 KIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186
K+ D + GNS+G+GF+ +++ EA++ +I+ +NG L +++ V
Sbjct: 120 KVATD-EKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYV 162
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 102/183 (55%), Gaps = 11/183 (6%)
Query: 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEE 77
S R+ ++ NLD + + +++ F G +++ V D N +GYGFV F +EE
Sbjct: 83 SLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGN-SKGYGFVHFETEE 141
Query: 78 DADYAIKVLNMIKLYGKPIRVNK---ASQDKKSLDVGANLF----IGNLDPDVDEKLLYD 130
A+ +I +N + L GK + V K + +K L A LF + N D D++ L +
Sbjct: 142 AANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKE 201
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN-RQITVSYA 189
F +G I T+ K+M D G S+GFGF+++++ EA++AA++A+NG+ + + + V+ A
Sbjct: 202 FFEPYGKI-TSYKVMSKED-GKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARA 259
Query: 190 YKK 192
KK
Sbjct: 260 QKK 262
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 21/187 (11%)
Query: 27 AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL 86
YV N +E L E F G + + Y + +G+GFV F + E A+ A++ L
Sbjct: 185 VYVKNFTEDFDDEKLKEFFEPYGKITS-YKVMSKEDGKSKGFGFVAFETTEAAEAAVQAL 243
Query: 87 NMIKL-YGKPIRVNKA-----------------SQDKKSLDVGANLFIGNLDPDVDEKLL 128
N + GK + V +A Q + G NL++ NLD +D+ L
Sbjct: 244 NGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRL 303
Query: 129 YDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188
FS +G I T+ K+M D + G S+GFGF+ +++ + A+ +NG+ + ++ + V+
Sbjct: 304 RIAFSPYGNI-TSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVAL 361
Query: 189 AYKKDTK 195
A +K+ +
Sbjct: 362 AQRKEER 368
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 105/182 (57%), Gaps = 5/182 (2%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L VTE+LL+ F GPV+++ + +D+VT GY +V F DA A+
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
+N + GK IR+ + +D G N+FI NLD +D K LY+ FSAFG I++ K
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILS-SK 128
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGERHGTP 202
+M D D G S+G+ F+ + + A+D AIE MNG+ L ++ V + +KD + E
Sbjct: 129 VMSD-DQG-SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKA 186
Query: 203 AE 204
+E
Sbjct: 187 SE 188
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 95/173 (54%), Gaps = 11/173 (6%)
Query: 27 AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL 86
++ NLD + + L+E F G +++ V D + +GY FV F+++ AD AI+ +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGS--KGYAFVHFQNQSAADRAIEEM 157
Query: 87 NMIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
N L G + R ++ ++ + N++I N D+D++ L D FS +G +
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192
+ K+M D +G S+GFGF+S+DS EA+ A+E MNG+ + + I V A KK
Sbjct: 218 S-VKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 268
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 94/180 (52%), Gaps = 21/180 (11%)
Query: 27 AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL 86
Y+ N + +E L ++F + G ++V V D + +G+GFV F S E A A++ +
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEM 250
Query: 87 NMIKLYGKPIRVNKASQD-------KKSLDV----------GANLFIGNLDPDVDEKLLY 129
N + G+ I V +A + K+ + G L+I NLD +D++ L
Sbjct: 251 NGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLR 310
Query: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189
+ FS+FG I + K+M++ G S+GFG I + S E + A+ MNG+ L ++ ++++ A
Sbjct: 311 NEFSSFGSI-SRVKVMQEE--GQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALA 367
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 104/171 (60%), Gaps = 3/171 (1%)
Query: 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83
D YVGNLD +TE++L + F GP+ N+ + D+ N + Y FVE+ DA+ A+
Sbjct: 74 DRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIAL 132
Query: 84 KVLNMIKLYGKPIRVNKASQDKKSL-DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 142
+ LN ++ +++N A Q ++S D NLF+G+L+ +VD++ L + F F ++
Sbjct: 133 QTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSG- 191
Query: 143 KIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
+M D TG+SRG+GF+S+ S + + A+++M GQ L R + +++A K+D
Sbjct: 192 HVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRD 242
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/183 (37%), Positives = 112/183 (61%), Gaps = 5/183 (2%)
Query: 7 PGVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQ 66
P VG N +++A+ + + YVG LDP VTE +L+E+F G V ++ V +D VT
Sbjct: 30 PAVG-NGEQRNNADAANNTSLYVGELDPSVTEAMLFEIFSMIGTVASIRVCRDAVTRRSL 88
Query: 67 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVDE 125
GY +V F + D + A++ LN + +P R+ + +D G N+FI NLD +D
Sbjct: 89 GYAYVNFLNAADGERAMEQLNYSLIRNRPCRIMWSQRDPALRRTGQGNIFIKNLDAGIDN 148
Query: 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185
K L+DTF+AFG I++ K+ + +TG S G+GF+ Y++ EA++AAI+ +NG L ++++
Sbjct: 149 KALHDTFAAFGNILS-CKVATN-ETG-SLGYGFVHYETAEAAEAAIKHVNGMLLNDKKVY 205
Query: 186 VSY 188
V +
Sbjct: 206 VGH 208
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 98/185 (52%), Gaps = 20/185 (10%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Y N+DP+VT++ +LF + G + + + +D +G+GFV F +A A+ L+
Sbjct: 230 YAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDE-DGKSKGFGFVNFEDHNEAQKAVDELH 288
Query: 88 MIKLYGKPI---RVNKASQDKKSLDV--------------GANLFIGNLDPDVDEKLLYD 130
G+ + R K S+ ++ L G NL++ N+ D++ L +
Sbjct: 289 DSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLRE 348
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190
F+ FG I T+ KIMR P +G SRGFGF+ Y + E ++ A+ MNG+ L NR + V+ A
Sbjct: 349 EFAPFGAI-TSCKIMRAP-SGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQ 406
Query: 191 KKDTK 195
+KD +
Sbjct: 407 RKDVR 411
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 107/223 (47%), Gaps = 20/223 (8%)
Query: 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDAD 80
R ++ NLD + + L + F G +++ V + +L GYGFV + + E A+
Sbjct: 131 RTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATNETGSL--GYGFVHYETAEAAE 188
Query: 81 YAIKVLNMIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFS 133
AIK +N + L K + R + ++ +++ N++ N+DP+V + F+
Sbjct: 189 AAIKHVNGMLLNDKKVYVGHHIPRKERQAKIEETRANFTNVYAKNVDPEVTDDEFEKLFT 248
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193
FG I T+ + RD D G S+GFGF++++ + A++ ++ +++ V+ A KK
Sbjct: 249 KFGKI-TSCVLQRDED-GKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKS 306
Query: 194 TKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQA 236
+ E E AA N K + L+ L+N P++
Sbjct: 307 EREEELRRSYE---AAKNEKLAKFQGVNLY------LKNIPES 340
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 104/171 (60%), Gaps = 4/171 (2%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG L+P V+E LL+++F G V ++ V +D +TN GY +V F E AI+
Sbjct: 38 ASLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIE 97
Query: 85 VLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN + GKP R+ + +D G+ N++I NL P +D K L++TFS FG I++ K
Sbjct: 98 QLNYTLIKGKPCRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILS-CK 156
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS-YAYKKD 193
+ D + G SRGFGF+ +++ + AIEA++G + ++++ V+ + KKD
Sbjct: 157 VATD-ENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKD 206
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 23/206 (11%)
Query: 27 AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL 86
YV N+D + ++E ELF + G + + + KD L +G+GFV F A A+ L
Sbjct: 221 VYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKL-RGFGFVNFEDHAAAAKAVDEL 279
Query: 87 NMIKLYGKPIRVNKASQDKKSLDV-----------------GANLFIGNLDPDVDEKLLY 129
N ++ G+ + V +A + + L G NLF+ NLD +D++ L
Sbjct: 280 NELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLK 339
Query: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189
+ F+ FG I T+ K+MRD +TGNSRGFGF+ + + E + AI N Q + + + V+ A
Sbjct: 340 EEFAPFGTI-TSAKVMRD-ETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 190 YKKDTKGERHGTPAERILAANNPSSQ 215
+K+ R A++I A N Q
Sbjct: 398 QRKEV---RRNQLAQQIQARNQMRFQ 420
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 87/351 (24%), Positives = 140/351 (39%), Gaps = 47/351 (13%)
Query: 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87
Y+ NL P + + L E F G +++ V D + +G+GFV F +E DA AI+ ++
Sbjct: 129 YIKNLHPAIDNKSLHETFSTFGNILSCKVATDE-NGVSRGFGFVHFENESDARDAIEAVD 187
Query: 88 MIKLYGKPI----RVNKASQDKKSLDVGA---NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ + + + V+K + K +V A N+++ N+D + ++ + F +G I +
Sbjct: 188 GMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITS 247
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHG 200
++ G RGFGF++++ A+ A++ +N +++ V A KK ER
Sbjct: 248 --AVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKK---YERLQ 302
Query: 201 TPAERILAANNPSSQKSRPHTLFASG------PPSLQNAPQANGTV-GGPVPPRPYANGA 253
++ AA K + LF L+ GT+ V N
Sbjct: 303 ELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNSR 362
Query: 254 ASGPISAVRPPPPPP-------QAAAFPPMQVAG---------------QAAWQGQPQHI 291
G + P Q A P+ VA QA Q + QH
Sbjct: 363 GFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRNQLAQQIQARNQMRFQHA 422
Query: 292 GQGVPQPVMPPPMQFRPPPNMPPPPPPQLASAMQRPPPQPMGM---GAQPP 339
V P QF PPP PP++ Q P PQ GM GA PP
Sbjct: 423 NAAAAAAVAGLPGQFMPPPMYYGGIPPRV--PFQGPNPQMAGMPKNGAMPP 471
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170
GA+L++G L+P V E LLYD FS G V++ ++ RD T S G+ ++++ EA A
Sbjct: 37 GASLYVGELEPTVSEALLYDIFSPIGS-VSSIRVCRDAITNTSLGYAYVNFHDHEAGPKA 95
Query: 171 IEAMN 175
IE +N
Sbjct: 96 IEQLN 100
>sp|Q5JQF8|PAP1M_HUMAN Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A
PE=2 SV=1
Length = 200
Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/178 (37%), Positives = 110/178 (61%), Gaps = 9/178 (5%)
Query: 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P+VTE +L+E F AGP++++ + +D++T GY +V ++ DA A++
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 85 VLNMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141
LN + G+P+R+ + +D +KS VG N+FI NL +D K LY+ FSAFG I++
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKS-GVG-NVFIKNLGKTIDNKALYNIFSAFGNILS- 118
Query: 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV-SYAYKKDTKGER 198
K+ D +G+GF+ + E+++ AI+ MNG +L R+I V + K+ + ER
Sbjct: 119 CKVA--CDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIFVGRFKSHKEREAER 174
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,365,577
Number of Sequences: 539616
Number of extensions: 10488575
Number of successful extensions: 186921
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2305
Number of HSP's successfully gapped in prelim test: 3041
Number of HSP's that attempted gapping in prelim test: 53136
Number of HSP's gapped (non-prelim): 45210
length of query: 377
length of database: 191,569,459
effective HSP length: 119
effective length of query: 258
effective length of database: 127,355,155
effective search space: 32857629990
effective search space used: 32857629990
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)