Query 017119
Match_columns 377
No_of_seqs 342 out of 2272
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 05:46:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017119.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017119hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0131 Splicing factor 3b, su 100.0 9.3E-36 2E-40 238.4 16.1 192 19-210 4-195 (203)
2 TIGR01659 sex-lethal sex-letha 100.0 3.3E-35 7.1E-40 272.2 21.7 174 18-193 101-276 (346)
3 TIGR01645 half-pint poly-U bin 100.0 2.3E-32 5.1E-37 265.7 19.8 170 22-192 105-284 (612)
4 KOG0148 Apoptosis-promoting RN 100.0 4.1E-32 8.8E-37 230.2 16.3 169 19-194 57-240 (321)
5 KOG0144 RNA-binding protein CU 100.0 7.6E-32 1.6E-36 242.0 14.2 183 14-198 24-212 (510)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 6.1E-31 1.3E-35 248.9 20.9 169 23-193 2-172 (352)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4.2E-30 9.2E-35 243.2 22.4 171 22-193 87-350 (352)
8 TIGR01628 PABP-1234 polyadenyl 100.0 8.2E-29 1.8E-33 247.9 29.3 171 21-194 175-366 (562)
9 TIGR01622 SF-CC1 splicing fact 100.0 1.2E-29 2.6E-34 248.2 21.3 171 20-192 85-266 (457)
10 KOG0145 RNA-binding protein EL 100.0 6.1E-30 1.3E-34 215.6 15.5 171 21-193 38-210 (360)
11 TIGR01628 PABP-1234 polyadenyl 100.0 3.5E-29 7.5E-34 250.6 20.6 165 26-192 2-167 (562)
12 KOG0117 Heterogeneous nuclear 100.0 3.6E-29 7.9E-34 225.9 15.4 169 22-199 81-338 (506)
13 TIGR01648 hnRNP-R-Q heterogene 100.0 1E-27 2.2E-32 233.2 19.3 165 21-193 55-223 (578)
14 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.7E-26 3.8E-31 229.0 20.7 169 17-193 168-376 (509)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 2.3E-26 4.9E-31 225.0 20.1 161 24-195 2-177 (481)
16 KOG0145 RNA-binding protein EL 99.9 1.2E-26 2.7E-31 195.7 15.3 176 16-192 119-358 (360)
17 KOG0109 RNA-binding protein LA 99.9 7.5E-27 1.6E-31 200.1 12.0 162 25-206 3-164 (346)
18 TIGR01648 hnRNP-R-Q heterogene 99.9 5.4E-26 1.2E-30 221.2 19.1 164 22-194 136-309 (578)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 8.6E-26 1.9E-30 220.9 20.5 164 21-191 272-479 (481)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.8E-25 4E-30 221.6 20.4 170 22-192 293-502 (509)
21 KOG0127 Nucleolar protein fibr 99.9 1.9E-25 4.1E-30 206.3 15.5 168 25-194 6-198 (678)
22 KOG0127 Nucleolar protein fibr 99.9 1.8E-24 3.9E-29 199.8 17.1 168 24-193 117-379 (678)
23 KOG0124 Polypyrimidine tract-b 99.9 3.3E-25 7.1E-30 195.4 10.5 166 24-190 113-288 (544)
24 KOG0148 Apoptosis-promoting RN 99.9 4.6E-24 9.9E-29 181.4 12.7 139 20-194 2-144 (321)
25 TIGR01622 SF-CC1 splicing fact 99.9 2.8E-23 6.1E-28 203.3 19.9 165 24-193 186-449 (457)
26 KOG0146 RNA-binding protein ET 99.9 3.2E-24 6.9E-29 181.9 10.4 171 22-194 17-367 (371)
27 KOG0123 Polyadenylate-binding 99.9 2.1E-23 4.5E-28 194.5 16.2 156 25-196 2-157 (369)
28 KOG0144 RNA-binding protein CU 99.9 3.5E-23 7.5E-28 186.5 11.5 170 22-193 122-505 (510)
29 KOG4205 RNA-binding protein mu 99.9 3.3E-23 7.2E-28 186.4 10.7 171 23-196 5-180 (311)
30 KOG0110 RNA-binding protein (R 99.9 1.1E-22 2.3E-27 194.1 13.1 169 25-194 516-695 (725)
31 KOG0147 Transcriptional coacti 99.9 3E-22 6.5E-27 186.2 7.6 180 14-195 169-361 (549)
32 TIGR01645 half-pint poly-U bin 99.8 8.8E-20 1.9E-24 178.2 20.7 81 22-102 202-282 (612)
33 KOG0123 Polyadenylate-binding 99.8 4.2E-20 9.1E-25 172.4 15.0 162 26-192 78-246 (369)
34 KOG0105 Alternative splicing f 99.8 1.3E-19 2.8E-24 146.0 14.9 149 22-181 4-177 (241)
35 KOG4206 Spliceosomal protein s 99.8 1.3E-18 2.9E-23 145.7 15.5 162 20-190 5-220 (221)
36 KOG4212 RNA-binding protein hn 99.8 4.4E-18 9.5E-23 153.8 15.6 164 23-189 43-291 (608)
37 PLN03134 glycine-rich RNA-bind 99.8 7E-18 1.5E-22 137.4 12.5 92 14-105 24-115 (144)
38 KOG0147 Transcriptional coacti 99.8 3E-18 6.4E-23 159.8 11.6 162 27-194 281-530 (549)
39 PLN03134 glycine-rich RNA-bind 99.7 1.7E-17 3.7E-22 135.1 11.1 85 108-193 31-115 (144)
40 KOG4211 Splicing factor hnRNP- 99.7 1E-16 2.2E-21 147.7 15.2 167 20-192 6-182 (510)
41 KOG0106 Alternative splicing f 99.7 2.3E-17 5E-22 139.8 7.2 149 25-190 2-169 (216)
42 KOG0124 Polypyrimidine tract-b 99.7 1.9E-16 4.2E-21 140.3 12.7 85 17-101 203-287 (544)
43 KOG0132 RNA polymerase II C-te 99.7 3.8E-14 8.3E-19 136.9 27.3 77 23-105 420-496 (894)
44 KOG1457 RNA binding protein (c 99.7 1.2E-15 2.7E-20 126.7 14.4 157 18-179 28-273 (284)
45 KOG1548 Transcription elongati 99.7 2.8E-15 6E-20 132.4 17.3 168 21-194 131-354 (382)
46 KOG0122 Translation initiation 99.7 6.8E-16 1.5E-20 130.2 10.5 85 107-192 185-269 (270)
47 KOG0110 RNA-binding protein (R 99.7 1E-15 2.2E-20 146.7 13.1 164 20-190 381-596 (725)
48 KOG0122 Translation initiation 99.6 9.4E-16 2E-20 129.3 10.6 87 18-104 183-269 (270)
49 PF00076 RRM_1: RNA recognitio 99.6 1.4E-15 3.1E-20 108.5 8.8 70 27-97 1-70 (70)
50 KOG0121 Nuclear cap-binding pr 99.6 7.6E-16 1.7E-20 116.9 7.4 85 21-105 33-117 (153)
51 COG0724 RNA-binding proteins ( 99.6 9.6E-15 2.1E-19 133.1 14.9 148 24-172 115-285 (306)
52 TIGR01659 sex-lethal sex-letha 99.6 2.1E-15 4.6E-20 140.2 10.4 85 107-192 103-187 (346)
53 KOG0149 Predicted RNA-binding 99.6 1.4E-15 3E-20 127.9 8.0 82 21-103 9-90 (247)
54 KOG4849 mRNA cleavage factor I 99.6 9.8E-14 2.1E-18 122.5 18.1 82 111-192 80-162 (498)
55 KOG1190 Polypyrimidine tract-b 99.6 3.8E-15 8.3E-20 134.0 9.5 167 19-197 23-233 (492)
56 KOG0125 Ataxin 2-binding prote 99.6 5.2E-15 1.1E-19 129.8 9.4 89 14-104 86-174 (376)
57 KOG0120 Splicing factor U2AF, 99.6 1.3E-14 2.8E-19 137.4 12.7 178 15-193 280-493 (500)
58 KOG0121 Nuclear cap-binding pr 99.6 2.7E-15 5.9E-20 113.9 6.3 82 108-190 33-114 (153)
59 KOG1190 Polypyrimidine tract-b 99.6 6.4E-14 1.4E-18 126.3 16.0 159 23-191 296-490 (492)
60 PF00076 RRM_1: RNA recognitio 99.6 9.5E-15 2.1E-19 104.2 8.3 70 114-185 1-70 (70)
61 KOG4207 Predicted splicing fac 99.6 4.4E-15 9.5E-20 122.1 6.6 85 109-194 11-95 (256)
62 KOG0113 U1 small nuclear ribon 99.6 1.2E-14 2.5E-19 126.0 9.3 89 106-195 96-184 (335)
63 KOG0149 Predicted RNA-binding 99.6 4.8E-15 1E-19 124.6 6.2 78 112-191 13-90 (247)
64 PF14259 RRM_6: RNA recognitio 99.5 2.3E-14 5.1E-19 102.3 8.3 70 27-97 1-70 (70)
65 KOG0126 Predicted RNA-binding 99.5 5.4E-16 1.2E-20 124.9 -0.3 85 108-193 32-116 (219)
66 KOG0125 Ataxin 2-binding prote 99.5 2.4E-14 5.1E-19 125.7 8.7 99 90-192 76-174 (376)
67 KOG0126 Predicted RNA-binding 99.5 8.2E-16 1.8E-20 123.8 -0.4 91 15-105 26-116 (219)
68 KOG0113 U1 small nuclear ribon 99.5 5.1E-14 1.1E-18 122.1 10.1 89 16-104 93-181 (335)
69 KOG0108 mRNA cleavage and poly 99.5 1.9E-14 4.2E-19 135.6 8.1 81 25-105 19-99 (435)
70 PLN03120 nucleic acid binding 99.5 5.8E-14 1.3E-18 122.3 10.3 77 24-104 4-80 (260)
71 KOG0132 RNA polymerase II C-te 99.5 3.1E-12 6.7E-17 124.0 23.0 80 110-196 420-499 (894)
72 KOG4207 Predicted splicing fac 99.5 2E-14 4.3E-19 118.3 6.8 88 18-105 7-94 (256)
73 KOG0111 Cyclophilin-type pepti 99.5 9.9E-15 2.1E-19 121.0 4.9 98 18-115 4-101 (298)
74 PLN03213 repressor of silencin 99.5 7.5E-14 1.6E-18 128.5 9.6 82 19-104 5-88 (759)
75 KOG0130 RNA-binding protein RB 99.5 6.1E-14 1.3E-18 107.5 7.2 86 19-104 67-152 (170)
76 PF14259 RRM_6: RNA recognitio 99.5 1.3E-13 2.7E-18 98.5 8.3 70 114-185 1-70 (70)
77 KOG0107 Alternative splicing f 99.5 8.5E-14 1.8E-18 111.8 7.9 81 21-106 7-87 (195)
78 KOG0114 Predicted RNA-binding 99.5 2.7E-13 5.9E-18 99.2 8.9 107 19-137 13-119 (124)
79 KOG0130 RNA-binding protein RB 99.5 1.1E-13 2.3E-18 106.2 6.9 85 109-194 70-154 (170)
80 KOG4212 RNA-binding protein hn 99.5 1.3E-12 2.9E-17 118.7 15.2 72 112-189 537-608 (608)
81 KOG0131 Splicing factor 3b, su 99.5 1.1E-13 2.4E-18 111.9 6.5 82 108-190 6-87 (203)
82 smart00362 RRM_2 RNA recogniti 99.4 6.7E-13 1.4E-17 94.5 9.5 72 26-99 1-72 (72)
83 KOG0111 Cyclophilin-type pepti 99.4 5.8E-14 1.3E-18 116.5 4.3 86 110-196 9-94 (298)
84 PLN03120 nucleic acid binding 99.4 3.4E-13 7.5E-18 117.5 9.3 77 111-192 4-80 (260)
85 KOG0129 Predicted RNA-binding 99.4 2.7E-12 5.8E-17 119.7 15.4 157 15-173 250-432 (520)
86 PLN03121 nucleic acid binding 99.4 7.9E-13 1.7E-17 113.4 10.7 78 23-104 4-81 (243)
87 KOG0107 Alternative splicing f 99.4 3.5E-13 7.5E-18 108.3 7.8 79 110-194 9-87 (195)
88 PLN03213 repressor of silencin 99.4 4.1E-13 8.9E-18 123.7 9.0 81 109-194 8-90 (759)
89 KOG1456 Heterogeneous nuclear 99.4 7.4E-12 1.6E-16 111.8 16.1 168 21-200 28-207 (494)
90 KOG0117 Heterogeneous nuclear 99.4 1.7E-12 3.7E-17 118.5 12.1 113 73-191 41-163 (506)
91 smart00360 RRM RNA recognition 99.4 1.5E-12 3.2E-17 92.4 8.7 71 29-99 1-71 (71)
92 smart00362 RRM_2 RNA recogniti 99.4 3.7E-12 8.1E-17 90.6 9.1 72 113-187 1-72 (72)
93 KOG0108 mRNA cleavage and poly 99.4 9.3E-13 2E-17 124.2 7.3 82 112-194 19-100 (435)
94 cd00590 RRM RRM (RNA recogniti 99.4 6.4E-12 1.4E-16 89.9 10.0 74 26-100 1-74 (74)
95 smart00360 RRM RNA recognition 99.4 3.8E-12 8.3E-17 90.2 8.1 71 116-187 1-71 (71)
96 KOG1365 RNA-binding protein Fu 99.4 1.6E-12 3.4E-17 116.4 7.2 167 23-192 160-362 (508)
97 KOG4454 RNA binding protein (R 99.3 3.2E-13 6.9E-18 112.2 2.1 149 22-184 7-155 (267)
98 KOG0120 Splicing factor U2AF, 99.3 2.5E-12 5.5E-17 121.9 8.2 169 18-194 169-371 (500)
99 KOG1456 Heterogeneous nuclear 99.3 8.4E-11 1.8E-15 105.2 16.6 156 19-181 282-474 (494)
100 COG0724 RNA-binding proteins ( 99.3 7.3E-12 1.6E-16 114.0 10.4 80 111-191 115-194 (306)
101 PLN03121 nucleic acid binding 99.3 6.9E-12 1.5E-16 107.6 9.1 77 111-192 5-81 (243)
102 KOG0114 Predicted RNA-binding 99.3 5E-12 1.1E-16 92.6 6.2 79 111-193 18-96 (124)
103 cd00590 RRM RRM (RNA recogniti 99.3 2.8E-11 6E-16 86.5 9.4 74 113-188 1-74 (74)
104 KOG0226 RNA-binding proteins [ 99.3 4.7E-12 1E-16 107.7 5.1 165 25-191 97-269 (290)
105 PF13893 RRM_5: RNA recognitio 99.3 2.6E-11 5.6E-16 82.3 7.7 56 41-101 1-56 (56)
106 smart00361 RRM_1 RNA recogniti 99.3 2.4E-11 5.1E-16 86.5 7.6 63 125-187 2-70 (70)
107 smart00361 RRM_1 RNA recogniti 99.3 3.1E-11 6.6E-16 85.9 8.0 61 38-98 2-69 (70)
108 PF13893 RRM_5: RNA recognitio 99.2 4E-11 8.7E-16 81.4 7.8 56 128-189 1-56 (56)
109 KOG4208 Nucleolar RNA-binding 99.2 7.3E-11 1.6E-15 97.8 8.7 88 17-104 42-130 (214)
110 KOG0105 Alternative splicing f 99.2 3.9E-11 8.4E-16 97.3 6.8 80 110-193 5-84 (241)
111 KOG4210 Nuclear localization s 99.2 4.6E-11 9.9E-16 107.9 6.6 170 22-193 86-265 (285)
112 KOG4208 Nucleolar RNA-binding 99.2 1.4E-10 3.1E-15 96.1 8.3 84 109-192 47-130 (214)
113 KOG0109 RNA-binding protein LA 99.1 5.4E-11 1.2E-15 103.1 5.8 74 112-194 3-76 (346)
114 KOG0112 Large RNA-binding prot 99.1 3.9E-11 8.4E-16 118.3 4.8 169 14-193 362-532 (975)
115 KOG4661 Hsp27-ERE-TATA-binding 99.1 2.3E-10 5.1E-15 107.4 9.4 82 22-103 403-484 (940)
116 KOG0146 RNA-binding protein ET 99.1 8.2E-11 1.8E-15 100.7 5.8 90 16-105 277-366 (371)
117 KOG0415 Predicted peptidyl pro 99.1 9.5E-11 2.1E-15 104.1 6.1 81 111-192 239-319 (479)
118 KOG0415 Predicted peptidyl pro 99.1 1.1E-10 2.5E-15 103.6 6.3 83 22-104 237-319 (479)
119 KOG4211 Splicing factor hnRNP- 99.1 1.1E-09 2.3E-14 101.8 11.9 159 22-186 101-352 (510)
120 KOG4206 Spliceosomal protein s 99.1 3.5E-10 7.5E-15 95.4 7.7 83 111-197 9-95 (221)
121 KOG4205 RNA-binding protein mu 99.0 2.3E-10 4.9E-15 103.7 5.5 153 23-176 96-256 (311)
122 KOG0153 Predicted RNA-binding 99.0 9.6E-10 2.1E-14 97.8 9.0 83 16-104 220-303 (377)
123 KOG4661 Hsp27-ERE-TATA-binding 99.0 9E-10 1.9E-14 103.6 8.4 82 110-192 404-485 (940)
124 KOG0128 RNA-binding protein SA 99.0 3.7E-11 8E-16 118.0 -1.7 151 22-192 665-815 (881)
125 KOG0153 Predicted RNA-binding 99.0 1.8E-09 3.8E-14 96.1 8.1 78 107-191 224-302 (377)
126 KOG1365 RNA-binding protein Fu 98.9 1.8E-08 3.9E-13 90.7 12.0 162 22-186 58-237 (508)
127 KOG4660 Protein Mei2, essentia 98.9 2.4E-09 5.2E-14 101.0 5.6 160 18-191 69-249 (549)
128 KOG0226 RNA-binding proteins [ 98.9 2.4E-09 5.2E-14 91.4 5.0 86 20-105 186-271 (290)
129 KOG4307 RNA binding protein RB 98.8 3.3E-09 7.2E-14 102.0 5.8 170 22-194 309-516 (944)
130 KOG4849 mRNA cleavage factor I 98.8 1.2E-06 2.6E-11 78.3 19.8 81 18-98 74-156 (498)
131 KOG0533 RRM motif-containing p 98.8 3E-08 6.4E-13 86.5 9.1 85 20-105 79-163 (243)
132 KOG1457 RNA binding protein (c 98.8 5.8E-08 1.3E-12 81.5 9.3 88 110-197 33-123 (284)
133 KOG4307 RNA binding protein RB 98.7 3.5E-08 7.6E-13 95.1 9.0 75 113-188 869-943 (944)
134 KOG2193 IGF-II mRNA-binding pr 98.7 5.7E-09 1.2E-13 95.0 1.7 156 25-193 2-158 (584)
135 KOG1548 Transcription elongati 98.7 6E-08 1.3E-12 86.5 7.6 81 111-192 134-221 (382)
136 KOG0533 RRM motif-containing p 98.6 1.1E-07 2.5E-12 82.9 8.1 82 111-194 83-164 (243)
137 KOG0116 RasGAP SH3 binding pro 98.6 7.1E-08 1.5E-12 90.9 7.3 87 16-103 280-366 (419)
138 PF04059 RRM_2: RNA recognitio 98.6 3.4E-07 7.4E-12 68.4 9.3 69 24-92 1-71 (97)
139 KOG4209 Splicing factor RNPS1, 98.6 4.6E-08 9.9E-13 85.6 5.4 86 18-104 95-180 (231)
140 PF04059 RRM_2: RNA recognitio 98.6 3.7E-07 8E-12 68.2 8.2 82 112-193 2-88 (97)
141 KOG4209 Splicing factor RNPS1, 98.6 9.3E-08 2E-12 83.7 5.6 83 108-192 98-180 (231)
142 KOG4454 RNA binding protein (R 98.5 7.1E-08 1.5E-12 80.7 2.2 79 111-192 9-87 (267)
143 KOG0151 Predicted splicing reg 98.5 5.9E-07 1.3E-11 87.1 8.6 83 21-103 171-256 (877)
144 KOG4660 Protein Mei2, essentia 98.5 1.9E-07 4.2E-12 88.4 5.1 72 108-185 72-143 (549)
145 KOG4676 Splicing factor, argin 98.4 1.1E-07 2.4E-12 86.0 3.1 151 23-180 6-214 (479)
146 KOG0106 Alternative splicing f 98.4 2.7E-07 6E-12 78.8 4.3 72 112-192 2-73 (216)
147 PF11608 Limkain-b1: Limkain b 98.4 2.7E-06 5.9E-11 60.5 7.8 71 25-105 3-78 (90)
148 KOG0116 RasGAP SH3 binding pro 98.3 1E-06 2.2E-11 83.3 7.1 79 111-191 288-366 (419)
149 KOG0128 RNA-binding protein SA 98.2 1.9E-07 4.2E-12 92.4 -1.3 164 22-187 569-742 (881)
150 PF11608 Limkain-b1: Limkain b 98.2 9.1E-06 2E-10 57.9 7.2 72 112-193 3-78 (90)
151 KOG1995 Conserved Zn-finger pr 98.2 2.5E-06 5.5E-11 77.0 5.5 86 109-194 64-156 (351)
152 COG5175 MOT2 Transcriptional r 98.2 2.9E-06 6.4E-11 75.5 5.5 113 20-132 110-241 (480)
153 KOG0151 Predicted splicing reg 98.2 3.8E-06 8.2E-11 81.7 6.5 81 111-192 174-257 (877)
154 KOG1995 Conserved Zn-finger pr 98.1 4.5E-06 9.7E-11 75.4 4.8 85 21-105 63-155 (351)
155 PF08777 RRM_3: RNA binding mo 97.9 2.9E-05 6.3E-10 59.4 6.4 59 25-89 2-60 (105)
156 KOG2314 Translation initiation 97.9 1.6E-05 3.4E-10 75.6 5.7 85 17-102 51-142 (698)
157 PF14605 Nup35_RRM_2: Nup53/35 97.9 3.5E-05 7.6E-10 51.0 5.6 53 24-83 1-53 (53)
158 KOG3671 Actin regulatory prote 97.9 0.014 3E-07 55.5 24.1 48 125-178 92-139 (569)
159 COG5175 MOT2 Transcriptional r 97.8 5.8E-05 1.3E-09 67.5 7.0 79 111-192 114-203 (480)
160 KOG1855 Predicted RNA-binding 97.8 2.9E-05 6.3E-10 71.6 5.1 84 17-100 224-320 (484)
161 PF08777 RRM_3: RNA binding mo 97.8 5.2E-05 1.1E-09 58.1 5.3 72 112-190 2-78 (105)
162 KOG4210 Nuclear localization s 97.7 2.6E-05 5.7E-10 70.7 3.5 83 22-105 182-265 (285)
163 KOG0115 RNA-binding protein p5 97.7 0.00012 2.5E-09 63.3 6.8 92 78-179 6-97 (275)
164 KOG0129 Predicted RNA-binding 97.6 0.00023 4.9E-09 67.5 8.3 72 13-84 359-431 (520)
165 KOG3152 TBP-binding protein, a 97.5 6.7E-05 1.5E-09 64.7 3.5 73 23-95 73-157 (278)
166 KOG1855 Predicted RNA-binding 97.5 0.00017 3.8E-09 66.6 6.3 78 110-188 230-320 (484)
167 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00046 1E-08 52.0 7.2 80 21-102 3-90 (100)
168 KOG2416 Acinus (induces apopto 97.4 0.00023 5E-09 68.3 5.9 79 111-195 444-525 (718)
169 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00051 1.1E-08 51.8 5.7 80 111-192 6-92 (100)
170 KOG3152 TBP-binding protein, a 97.3 0.00015 3.1E-09 62.7 2.4 73 110-183 73-157 (278)
171 PF10309 DUF2414: Protein of u 97.2 0.0024 5.1E-08 43.4 6.9 56 23-86 4-62 (62)
172 KOG1996 mRNA splicing factor [ 97.1 0.0011 2.3E-08 58.5 6.3 68 125-193 300-368 (378)
173 PF08952 DUF1866: Domain of un 97.1 0.0023 4.9E-08 51.3 7.5 72 23-103 26-106 (146)
174 KOG2202 U2 snRNP splicing fact 97.1 0.00026 5.7E-09 61.3 2.3 56 47-103 92-147 (260)
175 KOG2202 U2 snRNP splicing fact 97.0 0.00037 8.1E-09 60.4 2.5 66 126-193 83-149 (260)
176 KOG2314 Translation initiation 97.0 0.0012 2.7E-08 63.2 6.0 76 112-189 59-141 (698)
177 PF10567 Nab6_mRNP_bdg: RNA-re 97.0 0.034 7.5E-07 49.4 14.4 157 20-177 11-214 (309)
178 PF08675 RNA_bind: RNA binding 97.0 0.0044 9.4E-08 44.4 6.8 59 21-88 6-64 (87)
179 KOG1996 mRNA splicing factor [ 96.9 0.0028 6E-08 56.0 6.6 65 38-102 300-365 (378)
180 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0026 5.6E-08 42.1 4.6 51 113-171 3-53 (53)
181 KOG2591 c-Mpl binding protein, 96.8 0.0034 7.3E-08 60.2 6.6 96 77-187 148-247 (684)
182 KOG2416 Acinus (induces apopto 96.7 0.0013 2.8E-08 63.4 3.4 79 20-104 440-522 (718)
183 PF08952 DUF1866: Domain of un 96.6 0.0084 1.8E-07 48.1 6.7 57 126-192 51-107 (146)
184 PF15023 DUF4523: Protein of u 96.6 0.016 3.6E-07 45.8 8.1 77 17-101 79-159 (166)
185 KOG2193 IGF-II mRNA-binding pr 96.5 0.0024 5.3E-08 59.1 3.5 77 112-195 2-79 (584)
186 PF07576 BRAP2: BRCA1-associat 96.5 0.034 7.5E-07 42.8 9.2 72 20-93 9-81 (110)
187 KOG3671 Actin regulatory prote 96.4 0.89 1.9E-05 43.6 20.0 24 66-89 115-138 (569)
188 KOG2068 MOT2 transcription fac 96.4 0.0014 3E-08 59.3 1.3 83 22-104 75-163 (327)
189 PF10309 DUF2414: Protein of u 96.3 0.017 3.8E-07 39.2 6.1 53 112-174 6-62 (62)
190 PF07576 BRAP2: BRCA1-associat 96.3 0.05 1.1E-06 41.9 9.3 69 111-181 13-81 (110)
191 PF08675 RNA_bind: RNA binding 96.2 0.017 3.7E-07 41.4 5.9 54 113-176 11-64 (87)
192 KOG0112 Large RNA-binding prot 96.2 0.0061 1.3E-07 61.7 4.8 78 20-103 451-530 (975)
193 KOG2591 c-Mpl binding protein, 96.0 0.013 2.9E-07 56.2 6.0 81 11-98 162-246 (684)
194 KOG0115 RNA-binding protein p5 96.0 0.0083 1.8E-07 52.2 4.1 64 24-88 31-94 (275)
195 KOG4676 Splicing factor, argin 95.8 0.016 3.4E-07 53.4 5.0 73 113-187 9-84 (479)
196 PF11767 SET_assoc: Histone ly 95.4 0.064 1.4E-06 37.0 5.9 55 122-186 11-65 (66)
197 KOG4285 Mitotic phosphoprotein 95.4 0.04 8.7E-07 49.1 6.0 64 125-196 210-274 (350)
198 PF04847 Calcipressin: Calcipr 95.3 0.045 9.7E-07 46.3 5.8 62 124-192 8-71 (184)
199 PF03880 DbpA: DbpA RNA bindin 95.2 0.067 1.4E-06 38.1 5.7 60 121-189 11-74 (74)
200 PF03467 Smg4_UPF3: Smg-4/UPF3 95.2 0.018 3.9E-07 48.6 3.1 73 21-93 4-82 (176)
201 KOG4285 Mitotic phosphoprotein 95.0 0.17 3.7E-06 45.2 8.8 73 24-104 197-270 (350)
202 KOG2318 Uncharacterized conser 95.0 0.15 3.4E-06 49.5 9.1 128 21-189 171-305 (650)
203 PF04847 Calcipressin: Calcipr 95.0 0.06 1.3E-06 45.6 5.7 62 37-104 8-71 (184)
204 PF03467 Smg4_UPF3: Smg-4/UPF3 94.6 0.039 8.4E-07 46.5 3.6 82 111-192 7-98 (176)
205 KOG2135 Proteins containing th 94.5 0.022 4.8E-07 53.7 2.2 74 25-105 373-447 (526)
206 KOG2253 U1 snRNP complex, subu 94.3 0.039 8.5E-07 54.3 3.5 70 22-100 38-107 (668)
207 KOG0804 Cytoplasmic Zn-finger 94.3 0.17 3.7E-06 47.7 7.4 68 24-93 74-142 (493)
208 PF07292 NID: Nmi/IFP 35 domai 93.9 0.069 1.5E-06 39.1 3.3 65 69-133 1-74 (88)
209 PF11767 SET_assoc: Histone ly 93.8 0.34 7.4E-06 33.5 6.4 55 35-98 11-65 (66)
210 KOG2068 MOT2 transcription fac 92.8 0.04 8.8E-07 50.0 0.7 81 112-193 78-164 (327)
211 PF03880 DbpA: DbpA RNA bindin 92.6 0.62 1.3E-05 33.0 6.5 59 34-101 11-74 (74)
212 PF15023 DUF4523: Protein of u 92.2 0.36 7.8E-06 38.4 5.2 71 111-190 86-160 (166)
213 KOG2253 U1 snRNP complex, subu 91.9 0.18 3.9E-06 49.8 4.0 73 107-189 36-108 (668)
214 KOG0804 Cytoplasmic Zn-finger 91.6 0.7 1.5E-05 43.8 7.2 69 111-181 74-142 (493)
215 KOG2135 Proteins containing th 91.1 0.15 3.3E-06 48.3 2.5 62 124-193 386-447 (526)
216 PF14111 DUF4283: Domain of un 90.9 0.47 1E-05 38.8 5.1 108 26-139 17-133 (153)
217 KOG4574 RNA-binding protein (c 90.7 0.18 3.9E-06 51.2 2.7 71 28-104 302-374 (1007)
218 PHA03247 large tegument protei 90.6 22 0.00048 41.8 18.2 16 35-50 2296-2311(3151)
219 KOG2236 Uncharacterized conser 90.4 5.1 0.00011 38.4 11.7 7 158-164 318-324 (483)
220 KOG4574 RNA-binding protein (c 89.5 0.26 5.6E-06 50.1 2.7 73 114-193 301-375 (1007)
221 KOG4483 Uncharacterized conser 87.6 2 4.3E-05 40.1 6.8 56 111-173 391-446 (528)
222 PF07530 PRE_C2HC: Associated 85.3 1.2 2.7E-05 31.0 3.4 65 126-193 2-66 (68)
223 KOG4410 5-formyltetrahydrofola 84.7 1.9 4E-05 38.4 4.9 47 113-165 332-378 (396)
224 KOG4483 Uncharacterized conser 84.1 2.6 5.6E-05 39.4 5.8 57 21-84 388-445 (528)
225 smart00596 PRE_C2HC PRE_C2HC d 81.7 1.7 3.8E-05 30.0 2.8 64 126-192 2-65 (69)
226 PF10567 Nab6_mRNP_bdg: RNA-re 81.4 4.3 9.2E-05 36.6 5.9 81 111-192 15-108 (309)
227 KOG2891 Surface glycoprotein [ 81.0 0.54 1.2E-05 41.6 0.2 34 23-56 148-193 (445)
228 COG5594 Uncharacterized integr 80.5 2.5 5.3E-05 43.5 4.6 30 20-49 204-234 (827)
229 KOG2891 Surface glycoprotein [ 79.6 0.49 1.1E-05 41.8 -0.5 81 112-193 150-269 (445)
230 COG5193 LHP1 La protein, small 76.6 0.79 1.7E-05 42.8 -0.1 62 23-84 173-244 (438)
231 PF03468 XS: XS domain; Inter 76.1 2.9 6.3E-05 32.5 3.0 46 36-84 29-75 (116)
232 PF15513 DUF4651: Domain of un 75.4 7 0.00015 26.5 4.2 20 39-58 9-28 (62)
233 KOG4410 5-formyltetrahydrofola 75.3 7.2 0.00016 34.9 5.5 51 23-78 329-379 (396)
234 KOG2893 Zn finger protein [Gen 72.1 68 0.0015 28.1 10.6 6 183-188 74-79 (341)
235 KOG4357 Uncharacterized conser 71.9 5 0.00011 31.1 3.2 132 35-180 6-139 (164)
236 TIGR02542 B_forsyth_147 Bacter 71.6 9.1 0.0002 29.3 4.5 110 32-164 11-129 (145)
237 KOG4019 Calcineurin-mediated s 70.9 5.3 0.00011 33.3 3.4 75 24-104 10-90 (193)
238 COG4874 Uncharacterized protei 70.7 18 0.0004 31.7 6.7 58 22-81 156-225 (318)
239 KOG4672 Uncharacterized conser 69.3 85 0.0018 29.9 11.1 14 36-49 47-60 (487)
240 PF07530 PRE_C2HC: Associated 68.8 13 0.00027 25.9 4.5 62 39-103 2-64 (68)
241 PF02714 DUF221: Domain of unk 68.6 11 0.00023 35.1 5.5 57 69-134 1-57 (325)
242 PRK11901 hypothetical protein; 67.8 22 0.00048 32.7 7.0 65 19-88 240-306 (327)
243 smart00596 PRE_C2HC PRE_C2HC d 67.8 11 0.00023 26.2 3.8 62 39-103 2-64 (69)
244 PF00837 T4_deiodinase: Iodoth 67.7 13 0.00029 32.7 5.4 98 37-135 120-236 (237)
245 PRK10629 EnvZ/OmpR regulon mod 66.3 57 0.0012 25.8 8.3 72 23-102 34-109 (127)
246 COG2242 CobL Precorrin-6B meth 65.9 83 0.0018 26.7 9.9 106 68-192 60-165 (187)
247 COG0445 GidA Flavin-dependent 65.6 23 0.00051 35.2 7.1 80 66-146 236-335 (621)
248 KOG2854 Possible pfkB family c 65.6 18 0.00039 33.4 6.0 141 23-174 80-232 (343)
249 PF09902 DUF2129: Uncharacteri 65.0 32 0.00069 24.1 5.9 39 43-90 15-53 (71)
250 PF00403 HMA: Heavy-metal-asso 64.8 30 0.00064 23.0 5.8 53 26-84 1-57 (62)
251 KOG4019 Calcineurin-mediated s 64.6 6.9 0.00015 32.7 2.9 74 113-193 12-91 (193)
252 COG5638 Uncharacterized conser 62.6 20 0.00043 33.9 5.7 41 19-59 141-186 (622)
253 KOG4672 Uncharacterized conser 60.8 95 0.0021 29.6 9.7 23 69-91 42-64 (487)
254 PRK11901 hypothetical protein; 60.7 15 0.00033 33.8 4.6 61 112-178 246-308 (327)
255 PRK14548 50S ribosomal protein 60.1 30 0.00064 25.2 5.2 58 114-174 23-81 (84)
256 KOG2015 NEDD8-activating compl 60.0 68 0.0015 29.8 8.5 135 39-174 54-196 (422)
257 KOG4213 RNA-binding protein La 58.6 12 0.00027 31.1 3.3 58 22-84 109-168 (205)
258 PRK14548 50S ribosomal protein 58.2 37 0.00081 24.7 5.5 57 26-85 22-80 (84)
259 KOG2295 C2H2 Zn-finger protein 58.2 1.3 2.7E-05 43.2 -2.7 71 22-92 229-299 (648)
260 PRK02302 hypothetical protein; 55.7 45 0.00097 24.5 5.5 52 23-90 8-59 (89)
261 PRK02886 hypothetical protein; 55.2 47 0.001 24.3 5.5 52 23-90 6-57 (87)
262 TIGR03636 L23_arch archaeal ri 55.0 44 0.00095 23.9 5.3 59 113-174 15-74 (77)
263 KOG2295 C2H2 Zn-finger protein 54.6 2.1 4.5E-05 41.8 -2.0 70 111-181 231-300 (648)
264 KOG1486 GTP-binding protein DR 54.6 88 0.0019 28.0 8.1 60 80-139 201-267 (364)
265 KOG4365 Uncharacterized conser 53.0 2.3 5E-05 40.2 -1.8 79 113-193 5-83 (572)
266 KOG4365 Uncharacterized conser 53.0 2.7 5.9E-05 39.8 -1.4 76 25-101 4-79 (572)
267 PF03468 XS: XS domain; Inter 52.8 15 0.00033 28.5 2.9 39 124-166 30-68 (116)
268 PF11823 DUF3343: Protein of u 52.6 77 0.0017 22.1 6.7 65 67-139 2-66 (73)
269 PF07292 NID: Nmi/IFP 35 domai 51.6 7 0.00015 28.7 0.8 26 20-45 48-73 (88)
270 KOG4008 rRNA processing protei 50.8 15 0.00032 32.1 2.7 37 19-55 35-71 (261)
271 PF15513 DUF4651: Domain of un 50.2 28 0.0006 23.6 3.4 13 126-138 9-21 (62)
272 PF15063 TC1: Thyroid cancer p 50.1 7 0.00015 27.4 0.6 28 111-138 25-52 (79)
273 PRK09631 DNA topoisomerase IV 49.8 99 0.0021 31.8 8.8 61 23-87 219-283 (635)
274 TIGR02515 IV_pilus_PilQ type I 49.0 73 0.0016 30.9 7.7 63 36-101 8-74 (418)
275 KOG3424 40S ribosomal protein 48.9 60 0.0013 25.1 5.4 48 34-82 33-85 (132)
276 cd00874 RNA_Cyclase_Class_II R 47.3 1.3E+02 0.0028 28.1 8.6 112 32-162 120-238 (326)
277 cd00187 TOP4c DNA Topoisomeras 46.8 98 0.0021 30.3 8.0 61 24-86 225-289 (445)
278 PF11823 DUF3343: Protein of u 46.7 28 0.0006 24.4 3.3 26 155-180 2-27 (73)
279 cd04904 ACT_AAAH ACT domain of 46.4 99 0.0021 21.5 6.8 52 123-176 12-65 (74)
280 COG3254 Uncharacterized conser 46.1 71 0.0015 24.2 5.3 43 39-84 27-69 (105)
281 KOG1131 RNA polymerase II tran 45.2 44 0.00096 33.1 5.2 108 69-187 565-679 (755)
282 PF09383 NIL: NIL domain; Int 44.2 34 0.00074 24.0 3.5 56 122-177 13-69 (76)
283 TIGR01124 ilvA_2Cterm threonin 44.0 2E+02 0.0044 28.7 9.9 96 65-163 362-467 (499)
284 PF08544 GHMP_kinases_C: GHMP 43.8 79 0.0017 22.3 5.5 43 39-87 37-80 (85)
285 PTZ00191 60S ribosomal protein 43.4 58 0.0013 26.4 4.9 57 113-172 83-140 (145)
286 CHL00123 rps6 ribosomal protei 43.4 1.1E+02 0.0023 22.9 6.1 57 26-84 10-80 (97)
287 PRK10905 cell division protein 42.8 58 0.0012 30.0 5.3 61 22-88 245-308 (328)
288 PF14026 DUF4242: Protein of u 42.8 79 0.0017 22.5 5.1 59 114-174 3-67 (77)
289 PRK10905 cell division protein 42.3 40 0.00086 31.1 4.2 61 112-177 248-309 (328)
290 PF12829 Mhr1: Transcriptional 41.9 79 0.0017 23.4 5.0 55 119-177 20-74 (91)
291 PF09707 Cas_Cas2CT1978: CRISP 41.8 64 0.0014 23.6 4.5 50 22-74 23-72 (86)
292 smart00434 TOP4c DNA Topoisome 41.7 1.2E+02 0.0025 29.9 7.7 62 24-86 232-297 (445)
293 KOG3062 RNA polymerase II elon 41.1 76 0.0016 28.0 5.5 57 27-83 4-63 (281)
294 PF13291 ACT_4: ACT domain; PD 41.1 88 0.0019 21.9 5.3 65 113-177 8-72 (80)
295 PRK05928 hemD uroporphyrinogen 41.0 2.4E+02 0.0052 24.5 11.7 139 37-178 12-200 (249)
296 KOG0633 Histidinol phosphate a 40.1 56 0.0012 29.4 4.7 42 36-88 177-218 (375)
297 PF09707 Cas_Cas2CT1978: CRISP 39.6 56 0.0012 23.9 3.9 48 112-163 26-73 (86)
298 PRK10629 EnvZ/OmpR regulon mod 39.6 1.9E+02 0.0041 22.9 7.6 59 123-189 50-108 (127)
299 PF03439 Spt5-NGN: Early trans 39.6 59 0.0013 23.5 4.1 36 50-90 33-68 (84)
300 TIGR03636 L23_arch archaeal ri 39.5 1.1E+02 0.0025 21.8 5.4 56 26-84 15-72 (77)
301 PF10915 DUF2709: Protein of u 38.8 1.7E+02 0.0036 24.9 7.0 75 50-137 36-118 (238)
302 PRK06737 acetolactate synthase 38.2 1.5E+02 0.0032 21.1 6.3 62 113-177 6-67 (76)
303 PRK02290 3-dehydroquinate synt 38.2 3.5E+02 0.0075 25.5 11.4 47 40-86 35-86 (344)
304 PF03439 Spt5-NGN: Early trans 38.0 53 0.0011 23.8 3.7 29 152-180 42-70 (84)
305 COG2061 ACT-domain-containing 37.7 2.3E+02 0.0049 23.2 12.8 66 112-178 89-155 (170)
306 PHA00742 hypothetical protein 37.7 29 0.00063 28.6 2.4 61 114-177 92-155 (211)
307 KOG1923 Rac1 GTPase effector F 37.6 2.1E+02 0.0045 29.9 8.7 14 73-86 85-98 (830)
308 COG1163 DRG Predicted GTPase [ 37.2 3.6E+02 0.0077 25.3 11.1 50 22-84 183-234 (365)
309 PF05175 MTS: Methyltransferas 36.8 90 0.002 25.8 5.5 67 96-174 83-153 (170)
310 PF11411 DNA_ligase_IV: DNA li 35.7 29 0.00062 20.7 1.5 16 34-49 19-34 (36)
311 COG5353 Uncharacterized protei 35.3 1.8E+02 0.0039 23.6 6.4 56 23-78 86-154 (161)
312 TIGR01061 parC_Gpos DNA topois 35.2 2.1E+02 0.0045 30.2 8.8 61 24-86 248-312 (738)
313 COG2608 CopZ Copper chaperone 34.7 1.2E+02 0.0026 21.0 5.0 46 24-75 3-48 (71)
314 KOG2671 Putative RNA methylase 34.7 89 0.0019 29.4 5.3 50 31-84 9-58 (421)
315 PRK11558 putative ssRNA endonu 34.6 78 0.0017 23.7 4.1 51 22-75 25-75 (97)
316 KOG1295 Nonsense-mediated deca 34.6 43 0.00093 31.5 3.3 69 22-90 5-76 (376)
317 PRK09630 DNA topoisomerase IV 34.5 1.8E+02 0.0038 28.6 7.5 63 23-88 219-284 (479)
318 KOG1923 Rac1 GTPase effector F 34.2 2.3E+02 0.0049 29.6 8.4 8 128-135 137-144 (830)
319 cd06404 PB1_aPKC PB1 domain is 34.0 1.8E+02 0.004 21.0 8.0 58 24-88 8-70 (83)
320 KOG4008 rRNA processing protei 34.0 31 0.00066 30.2 2.1 29 110-138 39-67 (261)
321 PF14893 PNMA: PNMA 33.8 43 0.00093 31.3 3.2 26 22-47 16-41 (331)
322 PRK05560 DNA gyrase subunit A; 33.7 1.7E+02 0.0037 31.2 8.0 63 23-87 250-316 (805)
323 COG0018 ArgS Arginyl-tRNA synt 33.5 2.9E+02 0.0062 28.2 9.2 95 39-145 61-163 (577)
324 KOG1830 Wiskott Aldrich syndro 33.0 4.6E+02 0.01 25.3 17.3 7 41-47 52-58 (518)
325 KOG1579 Homocysteine S-methylt 32.9 3.8E+02 0.0082 24.9 8.9 85 113-208 131-215 (317)
326 KOG1830 Wiskott Aldrich syndro 32.8 4.6E+02 0.01 25.3 16.6 21 127-147 120-142 (518)
327 cd04878 ACT_AHAS N-terminal AC 32.8 1.5E+02 0.0032 19.6 6.3 51 124-176 13-64 (72)
328 PRK06545 prephenate dehydrogen 32.7 1.8E+02 0.004 27.4 7.5 66 110-177 289-354 (359)
329 KOG1295 Nonsense-mediated deca 32.7 59 0.0013 30.7 3.9 68 112-179 8-77 (376)
330 COG2519 GCD14 tRNA(1-methylade 32.7 3.7E+02 0.008 24.1 8.9 83 75-177 128-211 (256)
331 KOG2854 Possible pfkB family c 32.4 72 0.0016 29.6 4.3 64 22-85 158-231 (343)
332 TIGR01063 gyrA DNA gyrase, A s 32.4 1.5E+02 0.0033 31.5 7.4 61 24-86 248-312 (800)
333 KOG3432 Vacuolar H+-ATPase V1 32.3 68 0.0015 24.4 3.4 23 32-54 41-63 (121)
334 PF01170 UPF0020: Putative RNA 31.9 40 0.00086 28.4 2.5 63 75-138 70-136 (179)
335 CHL00030 rpl23 ribosomal prote 31.8 1.1E+02 0.0025 22.7 4.6 34 113-146 20-54 (93)
336 COG1587 HemD Uroporphyrinogen- 31.7 2.8E+02 0.0061 24.5 8.1 148 26-179 3-199 (248)
337 PF08156 NOP5NT: NOP5NT (NUC12 31.3 25 0.00055 24.3 1.0 39 126-175 27-65 (67)
338 PHA00019 IV phage assembly pro 31.3 3.2E+02 0.0069 26.6 9.0 59 35-98 27-94 (428)
339 PRK11558 putative ssRNA endonu 31.2 80 0.0017 23.7 3.7 49 112-164 28-76 (97)
340 COG5470 Uncharacterized conser 30.8 1.2E+02 0.0026 22.6 4.4 19 66-84 53-71 (96)
341 TIGR01873 cas_CT1978 CRISPR-as 30.8 46 0.001 24.4 2.3 50 22-75 23-74 (87)
342 PRK11634 ATP-dependent RNA hel 30.5 1.3E+02 0.0027 31.1 6.3 61 122-191 498-562 (629)
343 PRK12758 DNA topoisomerase IV 30.3 3.3E+02 0.0071 29.2 9.1 62 21-86 238-303 (869)
344 cd04931 ACT_PAH ACT domain of 30.3 2.2E+02 0.0048 20.9 6.9 52 123-176 26-80 (90)
345 PF01842 ACT: ACT domain; Int 29.7 1.1E+02 0.0023 20.1 4.1 50 123-175 12-62 (66)
346 PRK06369 nac nascent polypepti 29.7 1.4E+02 0.003 23.2 4.9 32 121-177 73-104 (115)
347 PRK12933 secD preprotein trans 29.6 3.5E+02 0.0075 27.7 8.9 70 26-103 42-113 (604)
348 cd00295 RNA_Cyclase RNA 3' pho 29.5 2.6E+02 0.0057 26.2 7.7 49 113-161 192-244 (338)
349 PF08734 GYD: GYD domain; Int 29.1 2.3E+02 0.0051 20.7 6.0 48 124-175 21-68 (91)
350 cd04887 ACT_MalLac-Enz ACT_Mal 29.1 1.9E+02 0.0041 19.6 6.4 62 114-176 2-63 (74)
351 KOG2144 Tyrosyl-tRNA synthetas 29.1 5 0.00011 36.2 -3.5 117 21-161 6-133 (360)
352 COG3227 LasB Zinc metalloprote 29.0 2.3E+02 0.005 27.9 7.2 117 34-163 49-175 (507)
353 PF02714 DUF221: Domain of unk 28.8 55 0.0012 30.3 3.2 35 157-193 1-35 (325)
354 KOG1179 Very long-chain acyl-C 28.8 6.4E+02 0.014 25.7 10.2 78 18-102 352-429 (649)
355 KOG0638 4-hydroxyphenylpyruvat 28.5 91 0.002 28.8 4.2 79 63-141 13-94 (381)
356 COG3254 Uncharacterized conser 28.3 1.6E+02 0.0035 22.3 4.8 42 126-171 27-68 (105)
357 PRK07400 30S ribosomal protein 27.9 2.1E+02 0.0045 26.6 6.8 36 35-75 12-53 (318)
358 PF01282 Ribosomal_S24e: Ribos 27.9 2.4E+02 0.0052 20.4 5.7 47 34-81 11-62 (84)
359 smart00195 DSPc Dual specifici 27.7 2.5E+02 0.0055 21.9 6.5 17 26-42 7-23 (138)
360 KOG1175 Acyl-CoA synthetase [L 27.7 63 0.0014 33.0 3.4 91 35-135 507-599 (626)
361 PF04765 DUF616: Protein of un 27.6 4.9E+02 0.011 24.1 8.9 69 15-84 28-108 (305)
362 PRK05561 DNA topoisomerase IV 27.5 2.8E+02 0.0061 29.3 8.2 62 24-86 258-324 (742)
363 TIGR00647 MG103 conserved hypo 27.2 44 0.00095 30.4 2.1 93 40-163 101-199 (279)
364 PF00521 DNA_topoisoIV: DNA gy 27.0 1.2E+02 0.0027 29.5 5.3 59 25-87 217-279 (426)
365 COG4086 Predicted secreted pro 26.5 3.4E+02 0.0074 24.6 7.3 88 32-137 41-130 (299)
366 TIGR01033 DNA-binding regulato 26.4 4.6E+02 0.01 23.2 9.5 43 25-74 95-143 (238)
367 COG4010 Uncharacterized protei 26.2 1.7E+02 0.0037 23.6 4.9 47 118-175 118-164 (170)
368 COG5362 Phage-related terminas 25.8 3.7E+02 0.008 22.5 6.8 32 71-102 104-135 (202)
369 PF14350 Beta_protein: Beta pr 25.6 3.9E+02 0.0085 25.0 8.3 25 123-147 137-161 (347)
370 PF11181 YflT: Heat induced st 25.6 69 0.0015 24.1 2.6 30 71-100 4-33 (103)
371 cd04889 ACT_PDH-BS-like C-term 25.5 1.9E+02 0.0041 18.4 5.6 44 125-171 12-55 (56)
372 PF13046 DUF3906: Protein of u 25.3 76 0.0016 21.7 2.4 34 36-71 30-63 (64)
373 COG5507 Uncharacterized conser 25.1 83 0.0018 23.4 2.8 22 65-86 65-86 (117)
374 PF12687 DUF3801: Protein of u 25.0 1.9E+02 0.0042 24.9 5.6 57 34-92 37-96 (204)
375 PF00398 RrnaAD: Ribosomal RNA 24.9 1.5E+02 0.0032 26.6 5.1 42 92-133 74-119 (262)
376 KOG3655 Drebrins and related a 24.9 2.5E+02 0.0054 27.5 6.6 64 36-100 46-118 (484)
377 COG2061 ACT-domain-containing 24.8 3.9E+02 0.0085 21.9 6.9 67 23-90 87-155 (170)
378 PF13575 DUF4135: Domain of un 24.8 1.6E+02 0.0034 28.0 5.5 99 38-139 30-144 (370)
379 COG0481 LepA Membrane GTPase L 24.7 1.4E+02 0.003 29.5 4.9 57 23-80 296-354 (603)
380 COG0030 KsgA Dimethyladenosine 24.7 1.9E+02 0.0042 26.0 5.6 27 111-137 95-121 (259)
381 PF11491 DUF3213: Protein of u 24.4 1.3E+02 0.0028 21.8 3.5 66 26-99 2-72 (88)
382 KOG2855 Ribokinase [Carbohydra 24.4 63 0.0014 30.1 2.5 148 25-184 62-211 (330)
383 PF12392 DUF3656: Collagenase 24.3 1.4E+02 0.0031 23.1 4.3 51 119-176 62-116 (122)
384 PF13291 ACT_4: ACT domain; PD 24.2 2.5E+02 0.0055 19.5 6.2 63 27-89 9-72 (80)
385 PRK00110 hypothetical protein; 24.2 5.2E+02 0.011 23.1 10.1 44 24-74 94-143 (245)
386 cd04909 ACT_PDH-BS C-terminal 24.1 2.3E+02 0.0049 18.9 6.6 51 124-176 14-64 (69)
387 PF00585 Thr_dehydrat_C: C-ter 24.0 1.7E+02 0.0038 21.4 4.4 51 39-89 22-74 (91)
388 COG5193 LHP1 La protein, small 24.0 41 0.00089 31.9 1.3 61 111-172 174-244 (438)
389 cd04886 ACT_ThrD-II-like C-ter 23.8 2.2E+02 0.0048 18.7 6.1 53 124-176 11-66 (73)
390 PHA00742 hypothetical protein 23.8 62 0.0013 26.7 2.1 26 67-92 133-158 (211)
391 PRK07168 bifunctional uroporph 23.6 1.7E+02 0.0038 28.9 5.6 64 126-189 264-334 (474)
392 PF02222 ATP-grasp: ATP-grasp 23.4 2.7E+02 0.0058 23.3 6.0 66 123-193 15-87 (172)
393 cd04880 ACT_AAAH-PDT-like ACT 23.3 2.5E+02 0.0055 19.2 5.7 52 123-176 11-66 (75)
394 PF15407 Spo7_2_N: Sporulation 23.3 31 0.00068 23.9 0.3 27 22-48 25-51 (67)
395 COG1021 EntE Peptide arylation 23.2 81 0.0018 30.3 3.0 97 73-181 400-506 (542)
396 COG0225 MsrA Peptide methionin 23.1 2.1E+02 0.0046 23.9 5.1 73 114-192 60-138 (174)
397 PRK10927 essential cell divisi 23.0 2.4E+02 0.0053 26.1 5.9 67 22-96 245-314 (319)
398 PF09869 DUF2096: Uncharacteri 23.0 2.5E+02 0.0055 23.3 5.5 47 118-175 118-164 (169)
399 PRK08559 nusG transcription an 22.8 1.7E+02 0.0037 23.8 4.7 25 153-177 45-69 (153)
400 PLN02707 Soluble inorganic pyr 22.7 3E+02 0.0065 24.9 6.4 42 125-176 207-249 (267)
401 PF09383 NIL: NIL domain; Int 22.7 1.2E+02 0.0026 21.1 3.3 61 28-88 6-68 (76)
402 TIGR03399 RNA_3prim_cycl RNA 3 22.7 5.3E+02 0.012 24.1 8.4 116 26-162 113-240 (326)
403 cd04908 ACT_Bt0572_1 N-termina 22.4 2.5E+02 0.0053 18.7 6.9 46 124-173 14-59 (66)
404 COG1797 CobB Cobyrinic acid a, 22.3 6.4E+02 0.014 24.7 8.8 61 113-173 145-206 (451)
405 PRK13581 D-3-phosphoglycerate 22.1 3E+02 0.0064 27.7 7.1 82 62-147 406-488 (526)
406 cd00875 RNA_Cyclase_Class_I RN 22.0 6.2E+02 0.013 23.8 8.7 113 30-161 118-243 (341)
407 PF12007 DUF3501: Protein of u 21.9 2.2E+02 0.0048 24.3 5.1 47 36-89 64-110 (192)
408 PF10281 Ish1: Putative stress 21.9 90 0.0019 18.6 2.1 18 122-139 3-20 (38)
409 PF06804 Lipoprotein_18: NlpB/ 21.8 3.1E+02 0.0067 25.3 6.6 51 22-79 196-246 (303)
410 COG2004 RPS24A Ribosomal prote 21.6 3.8E+02 0.0081 20.5 6.1 46 122-168 31-80 (107)
411 PF05036 SPOR: Sporulation rel 21.6 26 0.00057 24.1 -0.4 60 25-87 5-65 (76)
412 PRK08559 nusG transcription an 21.5 1.9E+02 0.004 23.6 4.6 33 51-88 36-68 (153)
413 PF07876 Dabb: Stress responsi 21.5 3.2E+02 0.0069 19.7 6.5 57 27-83 4-71 (97)
414 PRK10560 hofQ outer membrane p 21.5 6.1E+02 0.013 24.2 8.8 62 37-101 3-68 (386)
415 COG0045 SucC Succinyl-CoA synt 21.3 4E+02 0.0087 25.5 7.2 67 123-192 26-98 (387)
416 PF15063 TC1: Thyroid cancer p 21.3 81 0.0018 22.3 2.0 29 22-50 23-51 (79)
417 PTZ00108 DNA topoisomerase 2-l 21.3 3.8E+02 0.0081 30.6 8.0 59 24-84 885-946 (1388)
418 TIGR01619 hyp_HI0040 conserved 21.0 2.1E+02 0.0046 25.6 5.1 43 124-176 141-183 (249)
419 COG2088 SpoVG Uncharacterized 21.0 1.7E+02 0.0037 21.3 3.6 26 50-75 2-27 (95)
420 cd07894 Adenylation_RNA_ligase 20.6 2.8E+02 0.0062 26.1 6.2 58 120-177 240-300 (342)
421 cd04962 GT1_like_5 This family 20.5 5.7E+02 0.012 23.5 8.5 23 26-48 200-222 (371)
422 PF09341 Pcc1: Transcription f 20.5 1.4E+02 0.0031 20.8 3.3 20 156-175 4-23 (76)
423 PHA02592 52 DNA topisomerase I 20.4 3.3E+02 0.0072 26.7 6.7 56 23-84 226-285 (439)
424 PF05023 Phytochelatin: Phytoc 20.4 3.8E+02 0.0082 23.3 6.4 99 35-160 96-212 (212)
425 PRK11633 cell division protein 20.3 2.3E+02 0.0049 25.0 5.1 71 111-185 149-222 (226)
No 1
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=100.00 E-value=9.3e-36 Score=238.40 Aligned_cols=192 Identities=80% Similarity=1.280 Sum_probs=184.6
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
.+.++..||||+||+..++++.|+++|-+.|.|.++++-+|+.+..++|||||+|.++|+|+-|++.|+.+++.|+.|+|
T Consensus 4 ~~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 4 IERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred cccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCce
Q 017119 99 NKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 178 (377)
Q Consensus 99 ~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~ 178 (377)
+.++........+.+|||+||+..++|..|++.|+.||.++..-++++|..||..+||+||.|.+.+.+.+|++.++++.
T Consensus 84 ~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 84 NKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred EecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 99998878888889999999999999999999999999998878999999999999999999999999999999999999
Q ss_pred ecCeeeEEeeeeecCcCCcCCCChhhhhhhhc
Q 017119 179 LCNRQITVSYAYKKDTKGERHGTPAERILAAN 210 (377)
Q Consensus 179 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~ 210 (377)
++++.++|+|+.+++.++++.++..++++.+.
T Consensus 164 l~nr~itv~ya~k~~~kg~~~g~~~~rllaa~ 195 (203)
T KOG0131|consen 164 LCNRPITVSYAFKKDTKGERHGTAAERLLAAQ 195 (203)
T ss_pred hcCCceEEEEEEecCCCcccCCCHHHHHhhcc
Confidence 99999999999999999999999999998776
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.3e-35 Score=272.18 Aligned_cols=174 Identities=30% Similarity=0.465 Sum_probs=159.3
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
..+....++|||+||++++||++|+++|++||.|++|+|++|..++.++|||||+|.++++|++|++.|+++.+.++.|+
T Consensus 101 ~~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 101 NDTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 98 v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
|.++...... ....+|||+||++++++++|+++|++||.| ..++|++|+.++++||||||+|++.++|++||+.|++.
T Consensus 181 V~~a~p~~~~-~~~~~lfV~nLp~~vtee~L~~~F~~fG~V-~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 258 (346)
T TIGR01659 181 VSYARPGGES-IKDTNLYVTNLPRTITDDQLDTIFGKYGQI-VQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV 258 (346)
T ss_pred eecccccccc-cccceeEEeCCCCcccHHHHHHHHHhcCCE-EEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 9998754432 235689999999999999999999999998 57789999999999999999999999999999999999
Q ss_pred eecC--eeeEEeeeeecC
Q 017119 178 YLCN--RQITVSYAYKKD 193 (377)
Q Consensus 178 ~~~g--~~l~v~~a~~~~ 193 (377)
.+++ +.|+|+|+....
T Consensus 259 ~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 259 IPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred ccCCCceeEEEEECCccc
Confidence 9876 688999987653
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.3e-32 Score=265.70 Aligned_cols=170 Identities=26% Similarity=0.463 Sum_probs=155.9
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
...++|||+||++++++++|+++|++||.|.+|+|+.|+.+++++|||||+|.+.++|++|++.||+..++|+.|+|++.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CcCc----------cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHH
Q 017119 102 SQDK----------KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171 (377)
Q Consensus 102 ~~~~----------~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~ 171 (377)
.... ......++|||+||+.++++++|+++|+.||.| ..++|.+|..++.+||||||+|++.++|.+|+
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I-~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI 263 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEI-VKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 263 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCe-eEEEEEecCCCCCcCCeEEEEECCHHHHHHHH
Confidence 4321 112234689999999999999999999999998 67899999999999999999999999999999
Q ss_pred HHHcCceecCeeeEEeeeeec
Q 017119 172 EAMNGQYLCNRQITVSYAYKK 192 (377)
Q Consensus 172 ~~l~~~~~~g~~l~v~~a~~~ 192 (377)
+.||+..|+|+.|+|.++...
T Consensus 264 ~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 264 ASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHhCCCeeCCeEEEEEecCCC
Confidence 999999999999999998754
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-32 Score=230.17 Aligned_cols=169 Identities=31% Similarity=0.534 Sum_probs=155.5
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
.+.+....|||+.|..+++-++|++.|..||+|.+++|++|..++++|||+||.|.+.++|++||..|++..|.+|.||.
T Consensus 57 ~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRT 136 (321)
T KOG0148|consen 57 PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRT 136 (321)
T ss_pred CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeec
Confidence 33344679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcCccc---------------cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCC
Q 017119 99 NKASQDKKS---------------LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDS 163 (377)
Q Consensus 99 ~~~~~~~~~---------------~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~ 163 (377)
+|+..+..+ ...+++||||||...++|++|++.|+.||.| .+|++++| +||+||.|++
T Consensus 137 NWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I-~EVRvFk~------qGYaFVrF~t 209 (321)
T KOG0148|consen 137 NWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPI-QEVRVFKD------QGYAFVRFET 209 (321)
T ss_pred cccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcc-eEEEEecc------cceEEEEecc
Confidence 999876422 2346789999999999999999999999998 78899877 7899999999
Q ss_pred HHHHHHHHHHHcCceecCeeeEEeeeeecCc
Q 017119 164 FEASDAAIEAMNGQYLCNRQITVSYAYKKDT 194 (377)
Q Consensus 164 ~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~~ 194 (377)
+|+|.+||..+|+.++.|+.+++.|.+....
T Consensus 210 kEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 210 KEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred hhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 9999999999999999999999999987654
No 5
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=7.6e-32 Score=242.01 Aligned_cols=183 Identities=30% Similarity=0.474 Sum_probs=162.4
Q ss_pred CCCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc-cC
Q 017119 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK-LY 92 (377)
Q Consensus 14 ~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~-~~ 92 (377)
.+..+..+.+.-++||+.|+..++|.||+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+..|+++. +-
T Consensus 24 ~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlp 103 (510)
T KOG0144|consen 24 LDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLP 103 (510)
T ss_pred CCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccC
Confidence 33444555677799999999999999999999999999999999999999999999999999999999999998764 33
Q ss_pred --CceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHH
Q 017119 93 --GKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170 (377)
Q Consensus 93 --g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a 170 (377)
...|.|++++..++....+++||||-|++.++|.||+++|++||.| ++++|++| ..+.+||||||+|.+.+.|..|
T Consensus 104 G~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~I-ed~~ilrd-~~~~sRGcaFV~fstke~A~~A 181 (510)
T KOG0144|consen 104 GMHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHI-EDCYILRD-PDGLSRGCAFVKFSTKEMAVAA 181 (510)
T ss_pred CCCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCcc-chhhheec-ccccccceeEEEEehHHHHHHH
Confidence 3688999999888887778899999999999999999999999998 89999999 6799999999999999999999
Q ss_pred HHHHcCce-ecC--eeeEEeeeeecCcCCcC
Q 017119 171 IEAMNGQY-LCN--RQITVSYAYKKDTKGER 198 (377)
Q Consensus 171 ~~~l~~~~-~~g--~~l~v~~a~~~~~~~~~ 198 (377)
|+.||+.. +.| ..|.|+||..++.+..+
T Consensus 182 ika~ng~~tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 182 IKALNGTQTMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred HHhhccceeeccCCCceEEEecccCCCchHH
Confidence 99999875 444 67999999877655443
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=6.1e-31 Score=248.91 Aligned_cols=169 Identities=34% Similarity=0.533 Sum_probs=154.3
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
...+|||+||+.+++|+||+++|++||.|.+|+|++++.++.++|||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC-
Q 017119 103 QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN- 181 (377)
Q Consensus 103 ~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g- 181 (377)
..... ...++|||+||+.++++++|+++|+.||.| ..++++.+..++.++|||||+|++.++|++|++.|++..+.|
T Consensus 82 ~~~~~-~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSDS-IKGANLYVSGLPKTMTQHELESIFSPFGQI-ITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ccccc-cccceEEECCccccCCHHHHHHHHhccCCE-EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 55432 345689999999999999999999999998 466888888889999999999999999999999999999877
Q ss_pred -eeeEEeeeeecC
Q 017119 182 -RQITVSYAYKKD 193 (377)
Q Consensus 182 -~~l~v~~a~~~~ 193 (377)
+.|.|+|+....
T Consensus 160 ~~~i~v~~a~~~~ 172 (352)
T TIGR01661 160 TEPITVKFANNPS 172 (352)
T ss_pred ceeEEEEECCCCC
Confidence 567888886554
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=4.2e-30 Score=243.15 Aligned_cols=171 Identities=36% Similarity=0.588 Sum_probs=152.0
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC--ceeEEe
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG--KPIRVN 99 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g--~~i~v~ 99 (377)
...++|||+||+.++++++|+++|++||.|..++++.+..++.++|||||+|.+.++|++|++.|++..+.| +.|.|.
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 356789999999999999999999999999999999998888999999999999999999999999998877 567777
Q ss_pred ecCcCccc------------------------------------------------------------------------
Q 017119 100 KASQDKKS------------------------------------------------------------------------ 107 (377)
Q Consensus 100 ~~~~~~~~------------------------------------------------------------------------ 107 (377)
++......
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence 76422100
Q ss_pred -------------------cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHH
Q 017119 108 -------------------LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 168 (377)
Q Consensus 108 -------------------~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~ 168 (377)
....++|||+||++++++++|+++|++||.| ..++|++|..++.+||||||+|.+.++|.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v-~~v~i~~d~~t~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAV-QNVKIIRDLTTNQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCe-EEEEEeEcCCCCCccceEEEEECCHHHHH
Confidence 0011259999999999999999999999998 57899999999999999999999999999
Q ss_pred HHHHHHcCceecCeeeEEeeeeecC
Q 017119 169 AAIEAMNGQYLCNRQITVSYAYKKD 193 (377)
Q Consensus 169 ~a~~~l~~~~~~g~~l~v~~a~~~~ 193 (377)
+||+.|||..|+|+.|+|+|...+.
T Consensus 326 ~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 326 MAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHHHhCCCEECCeEEEEEEccCCC
Confidence 9999999999999999999998764
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=8.2e-29 Score=247.89 Aligned_cols=171 Identities=36% Similarity=0.585 Sum_probs=154.3
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC----Ccee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY----GKPI 96 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~----g~~i 96 (377)
....++|||+||+.++|+++|+++|++||.|.+++++.+. ++.++|||||+|.+.++|++|++.|++..+. |+.|
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l 253 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKL 253 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceee
Confidence 3456789999999999999999999999999999999885 6889999999999999999999999999999 9999
Q ss_pred EEeecCcCccc-----------------cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEE
Q 017119 97 RVNKASQDKKS-----------------LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFI 159 (377)
Q Consensus 97 ~v~~~~~~~~~-----------------~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV 159 (377)
.|.++..+.+. .....+|||+||++++++++|+++|++||.| .++++++| .++.++|||||
T Consensus 254 ~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i-~~~~i~~d-~~g~~~g~gfV 331 (562)
T TIGR01628 254 YVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEI-TSAKVMLD-EKGVSRGFGFV 331 (562)
T ss_pred EeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCe-EEEEEEEC-CCCCcCCeEEE
Confidence 99876544322 2335679999999999999999999999998 67899998 78999999999
Q ss_pred EeCCHHHHHHHHHHHcCceecCeeeEEeeeeecCc
Q 017119 160 SYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDT 194 (377)
Q Consensus 160 ~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~~ 194 (377)
+|.+.++|.+|++.||+..++|+.|+|.|+..+..
T Consensus 332 ~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 332 CFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred EeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 99999999999999999999999999999986653
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=1.2e-29 Score=248.18 Aligned_cols=171 Identities=35% Similarity=0.559 Sum_probs=155.2
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
.+...++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|+. |++..+.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 44567899999999999999999999999999999999999999999999999999999999998 99999999999998
Q ss_pred ecCcCccc-----------cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHH
Q 017119 100 KASQDKKS-----------LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 168 (377)
Q Consensus 100 ~~~~~~~~-----------~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~ 168 (377)
++...... .....+|||+||+..+++++|+++|+.||.| ..+.+.++..+|.++|||||+|.+.++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i-~~v~~~~d~~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDI-EDVQLHRDPETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCe-EEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 76433211 1124789999999999999999999999998 67899999999999999999999999999
Q ss_pred HHHHHHcCceecCeeeEEeeeeec
Q 017119 169 AAIEAMNGQYLCNRQITVSYAYKK 192 (377)
Q Consensus 169 ~a~~~l~~~~~~g~~l~v~~a~~~ 192 (377)
+|++.|++..|.|+.|+|.|+...
T Consensus 243 ~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 243 EALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHhcCCcEECCEEEEEEEccCC
Confidence 999999999999999999998743
No 10
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=6.1e-30 Score=215.63 Aligned_cols=171 Identities=34% Similarity=0.537 Sum_probs=157.5
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
.+.+..|.|..|+.++|++||+.+|...|+|++|++++|+.+|.+.||+||.|.+.+||++|+..||+..+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceec
Q 017119 101 ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180 (377)
Q Consensus 101 ~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~ 180 (377)
+........ +.+|||.+|++.+|..||.++|+.||.|+.+ +|+.|..||.+||.+||.|+..++|++||..|||.+-.
T Consensus 118 ARPSs~~Ik-~aNLYvSGlPktMtqkelE~iFs~fGrIItS-RiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~ 195 (360)
T KOG0145|consen 118 ARPSSDSIK-DANLYVSGLPKTMTQKELEQIFSPFGRIITS-RILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPS 195 (360)
T ss_pred ccCChhhhc-ccceEEecCCccchHHHHHHHHHHhhhhhhh-hhhhhcccceecceeEEEecchhHHHHHHHhccCCCCC
Confidence 987764443 4689999999999999999999999999754 88888899999999999999999999999999999876
Q ss_pred C--eeeEEeeeeecC
Q 017119 181 N--RQITVSYAYKKD 193 (377)
Q Consensus 181 g--~~l~v~~a~~~~ 193 (377)
| ..|.|+|+..-.
T Consensus 196 g~tepItVKFannPs 210 (360)
T KOG0145|consen 196 GCTEPITVKFANNPS 210 (360)
T ss_pred CCCCCeEEEecCCcc
Confidence 5 679999997653
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=3.5e-29 Score=250.61 Aligned_cols=165 Identities=42% Similarity=0.719 Sum_probs=150.7
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCc
Q 017119 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK 105 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 105 (377)
+|||+||+.++||++|+++|++||.|.+|+|++|..+++++|||||+|.+.++|++|++.+++..++|+.|+|.|+..+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred cc-cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeee
Q 017119 106 KS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQI 184 (377)
Q Consensus 106 ~~-~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l 184 (377)
.. .....+|||+||++++++++|+++|+.||.| ..+++..+ .+|+++|||||+|.+.++|++|++.|++..++|+.|
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i-~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNI-LSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEV 159 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCc-ceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceE
Confidence 22 2334689999999999999999999999998 46788887 578899999999999999999999999999999999
Q ss_pred EEeeeeec
Q 017119 185 TVSYAYKK 192 (377)
Q Consensus 185 ~v~~a~~~ 192 (377)
.|.+...+
T Consensus 160 ~v~~~~~~ 167 (562)
T TIGR01628 160 YVGRFIKK 167 (562)
T ss_pred EEeccccc
Confidence 99776544
No 12
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=3.6e-29 Score=225.87 Aligned_cols=169 Identities=27% Similarity=0.413 Sum_probs=145.5
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC-CceeEEee
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY-GKPIRVNK 100 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~-g~~i~v~~ 100 (377)
...+.||||.||.|+.|+||..+|++.|+|.+++++.|..+|.+||||||+|++.++|++|++.||+++|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999876 77777755
Q ss_pred cCcCcc--------------------------------------------------------------------------
Q 017119 101 ASQDKK-------------------------------------------------------------------------- 106 (377)
Q Consensus 101 ~~~~~~-------------------------------------------------------------------------- 106 (377)
+..+.+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 432200
Q ss_pred --------------ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHH
Q 017119 107 --------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172 (377)
Q Consensus 107 --------------~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~ 172 (377)
....-+.|||+||..++|+|.|+++|++||.| +.|+.++| ||||.|.+.++|.+|++
T Consensus 241 tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~v-eRVkk~rD--------YaFVHf~eR~davkAm~ 311 (506)
T KOG0117|consen 241 TVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKV-ERVKKPRD--------YAFVHFAEREDAVKAMK 311 (506)
T ss_pred eeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccce-EEeecccc--------eeEEeecchHHHHHHHH
Confidence 00001259999999999999999999999998 45555444 99999999999999999
Q ss_pred HHcCceecCeeeEEeeeeecCcCCcCC
Q 017119 173 AMNGQYLCNRQITVSYAYKKDTKGERH 199 (377)
Q Consensus 173 ~l~~~~~~g~~l~v~~a~~~~~~~~~~ 199 (377)
.+|++.|+|..|.|.+|+..+++..++
T Consensus 312 ~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 312 ETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred HhcCceecCceEEEEecCChhhhccch
Confidence 999999999999999999877655443
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=1e-27 Score=233.19 Aligned_cols=165 Identities=25% Similarity=0.452 Sum_probs=142.4
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC-CceeEEe
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY-GKPIRVN 99 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~-g~~i~v~ 99 (377)
....++|||+||+.+++|++|+++|++||.|.+|+|++| .++.++|||||+|.+.++|++||+.|++..+. ++.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345689999999999999999999999999999999999 68999999999999999999999999998885 7777776
Q ss_pred ecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceee-cCCCCCCCcceEEEEeCCHHHHHHHHHHHcC--
Q 017119 100 KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIM-RDPDTGNSRGFGFISYDSFEASDAAIEAMNG-- 176 (377)
Q Consensus 100 ~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~-~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~-- 176 (377)
.+.. .++|||+||++++++++|+++|++++..+.++.++ .+..+++++|||||+|+++++|.+|++.|+.
T Consensus 134 ~S~~-------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk 206 (578)
T TIGR01648 134 ISVD-------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGR 206 (578)
T ss_pred cccc-------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccc
Confidence 6532 46899999999999999999999997643333332 3345678899999999999999999998864
Q ss_pred ceecCeeeEEeeeeecC
Q 017119 177 QYLCNRQITVSYAYKKD 193 (377)
Q Consensus 177 ~~~~g~~l~v~~a~~~~ 193 (377)
..+.|+.|.|+|+..+.
T Consensus 207 i~l~Gr~I~VdwA~p~~ 223 (578)
T TIGR01648 207 IQLWGHVIAVDWAEPEE 223 (578)
T ss_pred eEecCceEEEEeecccc
Confidence 45789999999998654
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.7e-26 Score=228.97 Aligned_cols=169 Identities=26% Similarity=0.460 Sum_probs=143.6
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhc------------CCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHH
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQA------------GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~------------G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~ 84 (377)
........++|||+||+.++|+++|+++|.+| +.|..+.+ ...+|||||+|.+.++|++||+
T Consensus 168 ~~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~ 241 (509)
T TIGR01642 168 QQQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA 241 (509)
T ss_pred CccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc
Confidence 34556678999999999999999999999985 23444444 4467899999999999999996
Q ss_pred HhcCcccCCceeEEeecCcCc----------------------------cccCCCCeEEEcCCCCcCCHHHHHHHHhhcC
Q 017119 85 VLNMIKLYGKPIRVNKASQDK----------------------------KSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136 (377)
Q Consensus 85 ~l~~~~~~g~~i~v~~~~~~~----------------------------~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G 136 (377)
|+++.+.|+.|+|....... .......+|||+||++.+++++|+++|+.||
T Consensus 242 -l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 320 (509)
T TIGR01642 242 -LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG 320 (509)
T ss_pred -CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 99999999999986432211 0112346899999999999999999999999
Q ss_pred CeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecC
Q 017119 137 VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193 (377)
Q Consensus 137 ~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~ 193 (377)
.| ..+.|+++..+|.++|||||+|.+.++|..|++.|++..|+|+.|.|.++....
T Consensus 321 ~i-~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 321 DL-KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred Ce-eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 98 577899999999999999999999999999999999999999999999997543
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.95 E-value=2.3e-26 Score=225.01 Aligned_cols=161 Identities=21% Similarity=0.297 Sum_probs=137.9
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHh--cCcccCCceeEEeec
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL--NMIKLYGKPIRVNKA 101 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l--~~~~~~g~~i~v~~~ 101 (377)
+++|||+||+.+++|++|+++|++||.|.+|+++. +++||||+|.+.++|++|++.+ ++..+.|+.|+|+++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 68999999999999999999999999999999975 3579999999999999999874 678999999999998
Q ss_pred CcCcccc-----------CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHH
Q 017119 102 SQDKKSL-----------DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170 (377)
Q Consensus 102 ~~~~~~~-----------~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a 170 (377)
...+... ....+|||+||++++++++|+++|+.||.| ..++++++.. +++|||+|.+.++|.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V-~~v~i~~~~~----~~~afVef~~~~~A~~A 150 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKV-LRIVTFTKNN----VFQALVEFESVNSAQHA 150 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCE-EEEEEEecCC----ceEEEEEECCHHHHHHH
Confidence 6543111 111369999999999999999999999998 4667766532 46899999999999999
Q ss_pred HHHHcCceecC--eeeEEeeeeecCcC
Q 017119 171 IEAMNGQYLCN--RQITVSYAYKKDTK 195 (377)
Q Consensus 171 ~~~l~~~~~~g--~~l~v~~a~~~~~~ 195 (377)
++.|||..|.+ +.|+|+|++.+...
T Consensus 151 ~~~Lng~~i~~~~~~l~v~~sk~~~l~ 177 (481)
T TIGR01649 151 KAALNGADIYNGCCTLKIEYAKPTRLN 177 (481)
T ss_pred HHHhcCCcccCCceEEEEEEecCCCce
Confidence 99999999975 58999999876543
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=195.71 Aligned_cols=176 Identities=35% Similarity=0.578 Sum_probs=155.9
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC--
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG-- 93 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g-- 93 (377)
+-+.+......|||.+|++.+|..||+++|+.||.|..-+|..|..++.+||.+||.|...++|+.|++.||+..-.|
T Consensus 119 RPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~t 198 (360)
T KOG0145|consen 119 RPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCT 198 (360)
T ss_pred cCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCC
Confidence 344556678899999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred ceeEEeecCcCcccc--------------------------------------------------------------CCC
Q 017119 94 KPIRVNKASQDKKSL--------------------------------------------------------------DVG 111 (377)
Q Consensus 94 ~~i~v~~~~~~~~~~--------------------------------------------------------------~~~ 111 (377)
..|.|+++....... ...
T Consensus 199 epItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g 278 (360)
T KOG0145|consen 199 EPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGG 278 (360)
T ss_pred CCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCe
Confidence 567787765431100 113
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeee
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 191 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~ 191 (377)
.+|||.||..+++|..||++|..||.| ..++|++|..|.++|||+||.+.+-++|..||..|||..+.+|.|.|.|...
T Consensus 279 ~ciFvYNLspd~de~~LWQlFgpFGAv-~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 279 WCIFVYNLSPDADESILWQLFGPFGAV-TNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eEEEEEecCCCchHhHHHHHhCcccce-eeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 489999999999999999999999998 6899999999999999999999999999999999999999999999999876
Q ss_pred c
Q 017119 192 K 192 (377)
Q Consensus 192 ~ 192 (377)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 5
No 17
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=7.5e-27 Score=200.15 Aligned_cols=162 Identities=24% Similarity=0.443 Sum_probs=143.8
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcC
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD 104 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 104 (377)
.+||||||+.++++++|+.+|++||+|.+|.|+++ ||||..+++..|++|+++|++.+++|..|+|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999764 8999999999999999999999999999999998877
Q ss_pred ccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeee
Q 017119 105 KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQI 184 (377)
Q Consensus 105 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l 184 (377)
. ..+.+|+|+||...++.+||++.|++||.|+ +++|++ +|+||.|+..++|..|++.|++.+++|+++
T Consensus 75 s---k~stkl~vgNis~tctn~ElRa~fe~ygpvi-ecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m 142 (346)
T KOG0109|consen 75 S---KASTKLHVGNISPTCTNQELRAKFEKYGPVI-ECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRM 142 (346)
T ss_pred C---CCccccccCCCCccccCHHHhhhhcccCCce-eeeeec--------ceeEEEEeeccchHHHHhccccccccccee
Confidence 4 3446899999999999999999999999985 567764 499999999999999999999999999999
Q ss_pred EEeeeeecCcCCcCCCChhhhh
Q 017119 185 TVSYAYKKDTKGERHGTPAERI 206 (377)
Q Consensus 185 ~v~~a~~~~~~~~~~~~~~~~~ 206 (377)
+|..++..-..+.-.++.....
T Consensus 143 ~vq~stsrlrtapgmgDq~~cy 164 (346)
T KOG0109|consen 143 HVQLSTSRLRTAPGMGDQSGCY 164 (346)
T ss_pred eeeeeccccccCCCCCCHHHhe
Confidence 9999987655554445444433
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.94 E-value=5.4e-26 Score=221.17 Aligned_cols=164 Identities=26% Similarity=0.429 Sum_probs=137.7
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCC-eEEEEEe-ccCCCCCccceEEEEeCCHHHHHHHHHHhcC--cccCCceeE
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVP-KDRVTNLHQGYGFVEFRSEEDADYAIKVLNM--IKLYGKPIR 97 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~-i~~v~i~-~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~--~~~~g~~i~ 97 (377)
..+++|||+||+.++++++|+++|++++. +.++.++ .....++++|||||+|.+.++|++|++.|+. +.++|+.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 35789999999999999999999999864 4444443 3334567899999999999999999998763 568899999
Q ss_pred EeecCcCccc----cCCCCeEEEcCCCCcCCHHHHHHHHhhc--CCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHH
Q 017119 98 VNKASQDKKS----LDVGANLFIGNLDPDVDEKLLYDTFSAF--GVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171 (377)
Q Consensus 98 v~~~~~~~~~----~~~~~~l~V~nl~~~~~~~~l~~~f~~~--G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~ 171 (377)
|+|+...... ....++|||+||++++++++|+++|++| |.| +.|+++ ++||||+|++.++|++|+
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I-~rV~~~--------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKV-ERVKKI--------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCce-EEEEee--------cCeEEEEeCCHHHHHHHH
Confidence 9998765422 2335689999999999999999999999 988 445443 469999999999999999
Q ss_pred HHHcCceecCeeeEEeeeeecCc
Q 017119 172 EAMNGQYLCNRQITVSYAYKKDT 194 (377)
Q Consensus 172 ~~l~~~~~~g~~l~v~~a~~~~~ 194 (377)
+.||+.+|+|+.|+|+|++....
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCc
Confidence 99999999999999999987644
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.94 E-value=8.6e-26 Score=220.90 Aligned_cols=164 Identities=26% Similarity=0.383 Sum_probs=140.1
Q ss_pred cCCCCeEEEcCCCc-CCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 21 RNQDATAYVGNLDP-QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 21 ~~~~~~l~v~nLp~-~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
...+++|||+||+. ++|+++|+++|+.||.|.+|+++.+ .+|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999997 6999999999999999999999886 36899999999999999999999999999999999
Q ss_pred ecCcCccc------------------------------------cCCCCeEEEcCCCCcCCHHHHHHHHhhcCC-eeecc
Q 017119 100 KASQDKKS------------------------------------LDVGANLFIGNLDPDVDEKLLYDTFSAFGV-IVTNP 142 (377)
Q Consensus 100 ~~~~~~~~------------------------------------~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~-vv~~~ 142 (377)
++...... ...+.+|||+||++.+++++|+++|+.||. ++..+
T Consensus 347 ~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~i 426 (481)
T TIGR01649 347 PSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKF 426 (481)
T ss_pred EcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEE
Confidence 87543100 012358999999999999999999999998 34566
Q ss_pred eeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCee------eEEeeeee
Q 017119 143 KIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ------ITVSYAYK 191 (377)
Q Consensus 143 ~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~------l~v~~a~~ 191 (377)
+++.+. + ..+++|||+|++.++|.+|+..||+..|+++. |+|.|++.
T Consensus 427 k~~~~~-~-~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 427 KFFPKD-N-ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTS 479 (481)
T ss_pred EEecCC-C-CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccC
Confidence 665443 2 35889999999999999999999999999885 89998864
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=1.8e-25 Score=221.65 Aligned_cols=170 Identities=24% Similarity=0.329 Sum_probs=145.0
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
...++|||+||+.++++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|++|++.|+++.++|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999887
Q ss_pred CcCccc---------------------------cCCCCeEEEcCCCCc----------CCHHHHHHHHhhcCCeeeccee
Q 017119 102 SQDKKS---------------------------LDVGANLFIGNLDPD----------VDEKLLYDTFSAFGVIVTNPKI 144 (377)
Q Consensus 102 ~~~~~~---------------------------~~~~~~l~V~nl~~~----------~~~~~l~~~f~~~G~vv~~~~i 144 (377)
...... .....+|+|.|+... ...++|+++|++||.| ..|+|
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v-~~v~i 451 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPL-INIVI 451 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCe-eEEEe
Confidence 432110 012356889998531 1236899999999998 46777
Q ss_pred ecC---CCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeec
Q 017119 145 MRD---PDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192 (377)
Q Consensus 145 ~~d---~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~ 192 (377)
.++ ..++..+|++||+|.+.++|++|++.|||..|+|+.|.|.|....
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 764 234567899999999999999999999999999999999998654
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.9e-25 Score=206.29 Aligned_cols=168 Identities=31% Similarity=0.437 Sum_probs=150.4
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcC
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD 104 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 104 (377)
.||||++|+++++.++|.++|+.+|.|..|.++.+..++.+|||+||+|.-.|++++|++..++..+.|+.|+|..+...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999877544
Q ss_pred cccc-------------------------CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEE
Q 017119 105 KKSL-------------------------DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFI 159 (377)
Q Consensus 105 ~~~~-------------------------~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV 159 (377)
.... ....+|+|+||+|.+.+.+|+.+|++||.|+ ++.|.+....+. .|||||
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~-Ei~IP~k~dgkl-cGFaFV 163 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVV-EIVIPRKKDGKL-CGFAFV 163 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEE-EEEcccCCCCCc-cceEEE
Confidence 2111 1134799999999999999999999999985 667776655444 499999
Q ss_pred EeCCHHHHHHHHHHHcCceecCeeeEEeeeeecCc
Q 017119 160 SYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDT 194 (377)
Q Consensus 160 ~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~~ 194 (377)
.|.+..+|.+|++.+|+..|+||.|.|.||-.++.
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 99999999999999999999999999999987653
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.8e-24 Score=199.84 Aligned_cols=168 Identities=29% Similarity=0.490 Sum_probs=147.1
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCc
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ 103 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 103 (377)
.-+|+|+|||+.|.+.+|..+|+.||.|.+|.|.+... +.-+|||||+|.+..+|.+|++.+|+..|.||.|.|.|+..
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 56899999999999999999999999999999997765 44559999999999999999999999999999999999743
Q ss_pred Cccc----------------------------------------------------------------------------
Q 017119 104 DKKS---------------------------------------------------------------------------- 107 (377)
Q Consensus 104 ~~~~---------------------------------------------------------------------------- 107 (377)
+...
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 2100
Q ss_pred -------------cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHH
Q 017119 108 -------------LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAM 174 (377)
Q Consensus 108 -------------~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l 174 (377)
.....+|||+||++++++++|.++|++||.| ..+.|+.+..|+.++|.|||.|.+..+|+.||+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v-~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEV-KYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccc-eeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 0002479999999999999999999999998 78899999999999999999999999999999987
Q ss_pred -----cC-ceecCeeeEEeeeeecC
Q 017119 175 -----NG-QYLCNRQITVSYAYKKD 193 (377)
Q Consensus 175 -----~~-~~~~g~~l~v~~a~~~~ 193 (377)
.+ ..|+||.|.|..+..+.
T Consensus 355 spa~e~g~~ll~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 355 SPASEDGSVLLDGRLLKVTLAVTRK 379 (678)
T ss_pred CccCCCceEEEeccEEeeeeccchH
Confidence 24 67899999999886543
No 23
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=3.3e-25 Score=195.38 Aligned_cols=166 Identities=27% Similarity=0.486 Sum_probs=151.8
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCc
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ 103 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 103 (377)
-++||||.|.+++.|+.|+..|..||.|++|.+-+|..+++++|||||+|+-.|.|+.|++.+|+..++||.|+|..-..
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999986543
Q ss_pred Cc----------cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 017119 104 DK----------KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173 (377)
Q Consensus 104 ~~----------~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~ 173 (377)
-. ++...-++|||..+..+++|+||+..|+.||+|+ .|.+.++...+.+|||+||+|.+.++..+|+..
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~-~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIV-KCQLARAPTGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhccee-eEEeeccCCCCCccceeeEEeccccchHHHhhh
Confidence 22 1223346899999999999999999999999994 789999999999999999999999999999999
Q ss_pred HcCceecCeeeEEeeee
Q 017119 174 MNGQYLCNRQITVSYAY 190 (377)
Q Consensus 174 l~~~~~~g~~l~v~~a~ 190 (377)
+|-..+.|+.|+|-.+.
T Consensus 272 MNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGKCV 288 (544)
T ss_pred cchhhcccceEeccccc
Confidence 99999999999987664
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.6e-24 Score=181.37 Aligned_cols=139 Identities=37% Similarity=0.678 Sum_probs=121.1
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
+.++-+||||+||+.++||+-|..+|.+.|.|+.|+|+.+ +|+|+
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~ 46 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVN 46 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhccc
Confidence 3567899999999999999999999999999999999776 22333
Q ss_pred ecCc----CccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHc
Q 017119 100 KASQ----DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175 (377)
Q Consensus 100 ~~~~----~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~ 175 (377)
|+.. ++........+||+.|...++.|+|++.|..||+| ++++|+||..|+++|||+||.|-+.++|+.||+.|+
T Consensus 47 wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGev-S~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~Mn 125 (321)
T KOG0148|consen 47 WATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEV-SDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMN 125 (321)
T ss_pred cccCcccCCCCccccceeEEehhcchhcchHHHHHHhcccccc-ccceEeecccCCcccceeEEeccchHHHHHHHHHhC
Confidence 3322 22222334469999999999999999999999998 899999999999999999999999999999999999
Q ss_pred CceecCeeeEEeeeeecCc
Q 017119 176 GQYLCNRQITVSYAYKKDT 194 (377)
Q Consensus 176 ~~~~~g~~l~v~~a~~~~~ 194 (377)
|+.|.+|.|+..||.+|-.
T Consensus 126 GqWlG~R~IRTNWATRKp~ 144 (321)
T KOG0148|consen 126 GQWLGRRTIRTNWATRKPS 144 (321)
T ss_pred CeeeccceeeccccccCcc
Confidence 9999999999999998863
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=2.8e-23 Score=203.27 Aligned_cols=165 Identities=28% Similarity=0.435 Sum_probs=140.0
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCc
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ 103 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 103 (377)
.++|||+||+.++++++|+++|+.||.|..|.++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68999999999999999999999999999999999998889999999999999999999999999999999999999532
Q ss_pred Ccc-----------------------------------------------------------------------------
Q 017119 104 DKK----------------------------------------------------------------------------- 106 (377)
Q Consensus 104 ~~~----------------------------------------------------------------------------- 106 (377)
...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 100
Q ss_pred ------------ccCCCCeEEEcCCCCcCC----------HHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCH
Q 017119 107 ------------SLDVGANLFIGNLDPDVD----------EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSF 164 (377)
Q Consensus 107 ------------~~~~~~~l~V~nl~~~~~----------~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~ 164 (377)
......+|+|.||-...+ .+||++.|++||.|+ .+.|.. ....|++||+|.+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~-~v~v~~----~~~~G~~fV~F~~~ 420 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV-HIYVDT----KNSAGKIYLKFSSV 420 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee-EEEEeC----CCCceeEEEEECCH
Confidence 001234688888844333 368999999999984 455542 34679999999999
Q ss_pred HHHHHHHHHHcCceecCeeeEEeeeeecC
Q 017119 165 EASDAAIEAMNGQYLCNRQITVSYAYKKD 193 (377)
Q Consensus 165 ~~A~~a~~~l~~~~~~g~~l~v~~a~~~~ 193 (377)
++|.+|++.|+|+.|+|+.|.+.|.....
T Consensus 421 e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 421 DAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred HHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 99999999999999999999999987543
No 26
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3.2e-24 Score=181.87 Aligned_cols=171 Identities=32% Similarity=0.468 Sum_probs=149.8
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC---CceeEE
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY---GKPIRV 98 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~---g~~i~v 98 (377)
.++++||||.|.+.-+|+|++.+|..||.|++|.+.+.. ++.+||||||.|.+..+|+.||..|++..-. ...|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 378899999999999999999999999999999998887 6889999999999999999999999975422 356677
Q ss_pred eecCcCcccc----------------------------------------------------------------------
Q 017119 99 NKASQDKKSL---------------------------------------------------------------------- 108 (377)
Q Consensus 99 ~~~~~~~~~~---------------------------------------------------------------------- 108 (377)
++++.+++..
T Consensus 96 K~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~ 175 (371)
T KOG0146|consen 96 KFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLA 175 (371)
T ss_pred EeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccc
Confidence 7765543110
Q ss_pred --------------------------------------------------------------------------------
Q 017119 109 -------------------------------------------------------------------------------- 108 (377)
Q Consensus 109 -------------------------------------------------------------------------------- 108 (377)
T Consensus 176 A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~A 255 (371)
T KOG0146|consen 176 AAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAA 255 (371)
T ss_pred cCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhh
Confidence
Q ss_pred ---------------------------CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEe
Q 017119 109 ---------------------------DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY 161 (377)
Q Consensus 109 ---------------------------~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f 161 (377)
..+|+|||.+|+-+..+.||...|..||.|| +.+++.|+.|+++|+|+||.|
T Consensus 256 aypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhiv-SaKVFvDRATNQSKCFGFVSf 334 (371)
T KOG0146|consen 256 AYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIV-SAKVFVDRATNQSKCFGFVSF 334 (371)
T ss_pred hcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcccccee-eeeeeehhccccccceeeEec
Confidence 0046899999999999999999999999996 569999999999999999999
Q ss_pred CCHHHHHHHHHHHcCceecCeeeEEeeeeecCc
Q 017119 162 DSFEASDAAIEAMNGQYLCNRQITVSYAYKKDT 194 (377)
Q Consensus 162 ~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~~ 194 (377)
++..+|+.||..+||..|.=++|+|.+.+.++.
T Consensus 335 DNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 335 DNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred CCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 999999999999999999999999998877654
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=2.1e-23 Score=194.53 Aligned_cols=156 Identities=42% Similarity=0.728 Sum_probs=143.8
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcC
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD 104 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 104 (377)
..|||| .++||.+|.++|+.+|.|.++++++|. + +.|||||.|.+.++|++|++.+|...+.|+.|++.|+..+
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999998 6 9999999999999999999999999999999999999776
Q ss_pred ccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeee
Q 017119 105 KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQI 184 (377)
Q Consensus 105 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l 184 (377)
... |||.||+.+++..+|+++|+.||.|+ +|++..|.+ | +||| ||+|+++++|++|++.+||..+.|+.|
T Consensus 76 ~~~------~~i~nl~~~~~~~~~~d~f~~~g~il-S~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki 145 (369)
T KOG0123|consen 76 PSL------VFIKNLDESIDNKSLYDTFSEFGNIL-SCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKI 145 (369)
T ss_pred Cce------eeecCCCcccCcHHHHHHHHhhcCee-EEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCee
Confidence 543 99999999999999999999999995 679988844 4 9999 999999999999999999999999999
Q ss_pred EEeeeeecCcCC
Q 017119 185 TVSYAYKKDTKG 196 (377)
Q Consensus 185 ~v~~a~~~~~~~ 196 (377)
.|.....+....
T Consensus 146 ~vg~~~~~~er~ 157 (369)
T KOG0123|consen 146 YVGLFERKEERE 157 (369)
T ss_pred EEeeccchhhhc
Confidence 998887765543
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=3.5e-23 Score=186.50 Aligned_cols=170 Identities=33% Similarity=0.531 Sum_probs=150.3
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc-cCC--ceeEE
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK-LYG--KPIRV 98 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~-~~g--~~i~v 98 (377)
.++++||||.|++.+||.||+++|.+||.|++|.|++|. .+.+||||||.|.+.|.|..|++.||+.. +.| ..|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 458999999999999999999999999999999999987 68999999999999999999999999853 444 57888
Q ss_pred eecCcCccccCC--------------------------------------------------------------------
Q 017119 99 NKASQDKKSLDV-------------------------------------------------------------------- 110 (377)
Q Consensus 99 ~~~~~~~~~~~~-------------------------------------------------------------------- 110 (377)
+|++.++.....
T Consensus 201 kFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~ 280 (510)
T KOG0144|consen 201 KFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAAL 280 (510)
T ss_pred EecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHh
Confidence 888765321100
Q ss_pred --------------------------------------------------------------------------------
Q 017119 111 -------------------------------------------------------------------------------- 110 (377)
Q Consensus 111 -------------------------------------------------------------------------------- 110 (377)
T Consensus 281 ~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~ 360 (510)
T KOG0144|consen 281 AAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPV 360 (510)
T ss_pred hhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCcc
Confidence
Q ss_pred ---------------------------------------------------------------CCeEEEcCCCCcCCHHH
Q 017119 111 ---------------------------------------------------------------GANLFIGNLDPDVDEKL 127 (377)
Q Consensus 111 ---------------------------------------------------------------~~~l~V~nl~~~~~~~~ 127 (377)
+.+|||++|+-+.-+.|
T Consensus 361 aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~ 440 (510)
T KOG0144|consen 361 AASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQD 440 (510)
T ss_pred cccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHH
Confidence 12699999999999999
Q ss_pred HHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecC
Q 017119 128 LYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193 (377)
Q Consensus 128 l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~ 193 (377)
|...|..||.|+ +.+++.|+.|+.+|+|+||.|++..+|..||..+|+..|..++++|.....+.
T Consensus 441 l~~~f~pfG~Vl-sakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 441 LIATFQPFGGVL-SAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred HHHHhcccccee-EEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 999999999984 67999999999999999999999999999999999999999999999876554
No 29
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.89 E-value=3.3e-23 Score=186.43 Aligned_cols=171 Identities=30% Similarity=0.496 Sum_probs=153.3
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
+.++|||++|+++++++.|+++|.+||+|.+|.+++|..++.+++|+||+|.+.+...+++. ...+.|+++.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 88999999999999999999999999999999999999999999999999999999888887 55677899999988877
Q ss_pred cCccccCC-----CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 103 QDKKSLDV-----GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 103 ~~~~~~~~-----~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
........ ..+|||+.|+.++++++|++.|++||.| ..+.++.|..+...+||+||.|++++++++++. ..-+
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v-~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~ 161 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKV-ADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFH 161 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhcccee-EeeEEeecccccccccceeeEeccccccceecc-ccee
Confidence 66533332 3489999999999999999999999966 788999999999999999999999999999886 5788
Q ss_pred eecCeeeEEeeeeecCcCC
Q 017119 178 YLCNRQITVSYAYKKDTKG 196 (377)
Q Consensus 178 ~~~g~~l~v~~a~~~~~~~ 196 (377)
.|+++.+.|..|..+....
T Consensus 162 ~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 162 DFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred eecCceeeEeeccchhhcc
Confidence 8999999999998876543
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=1.1e-22 Score=194.08 Aligned_cols=169 Identities=26% Similarity=0.473 Sum_probs=147.8
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCC---CCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVT---NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
.+|||.||.++++.++|..+|...|.|.++.|...+.. -.+.|||||+|.+.++|++|++.|+++.++|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 33999999999999999999999999999988665422 246699999999999999999999999999999999998
Q ss_pred Cc--------CccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 017119 102 SQ--------DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173 (377)
Q Consensus 102 ~~--------~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~ 173 (377)
.. +........+|+|.||++..+..+|+.+|..||.+ .+++|.+....+.++|||||+|-+.++|..|+++
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGql-ksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQL-KSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccce-eeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 71 11222224579999999999999999999999998 5778877666778999999999999999999999
Q ss_pred HcCceecCeeeEEeeeeecCc
Q 017119 174 MNGQYLCNRQITVSYAYKKDT 194 (377)
Q Consensus 174 l~~~~~~g~~l~v~~a~~~~~ 194 (377)
|....|.||+|.++|+.....
T Consensus 675 l~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 675 LGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred hcccceechhhheehhccchH
Confidence 999999999999999987654
No 31
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=3e-22 Score=186.19 Aligned_cols=180 Identities=31% Similarity=0.462 Sum_probs=158.6
Q ss_pred CCCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 14 ~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
...-..+++.-+|||+-.|....+..+|.+||+.+|.|.+|.++.|+.+..++|.|||+|.+.++...|+. |.|..+.|
T Consensus 169 ~~~l~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg 247 (549)
T KOG0147|consen 169 SRILSPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLG 247 (549)
T ss_pred cccCCchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccC
Confidence 34455677788999999999999999999999999999999999999999999999999999999999996 99999999
Q ss_pred ceeEEeecCcCcccc-------------CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEE
Q 017119 94 KPIRVNKASQDKKSL-------------DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFIS 160 (377)
Q Consensus 94 ~~i~v~~~~~~~~~~-------------~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~ 160 (377)
..|.|......+... .....||||||.+++++++|+.+|+.||.| ..|.+.+|.+||.+|||+||+
T Consensus 248 ~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~I-e~v~l~~d~~tG~skgfGfi~ 326 (549)
T KOG0147|consen 248 VPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKI-ENVQLTKDSETGRSKGFGFIT 326 (549)
T ss_pred ceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccc-eeeeeccccccccccCcceEE
Confidence 999997654332111 111239999999999999999999999998 788999998999999999999
Q ss_pred eCCHHHHHHHHHHHcCceecCeeeEEeeeeecCcC
Q 017119 161 YDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195 (377)
Q Consensus 161 f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~~~ 195 (377)
|.+.++|++|++.||+.+|.|+.|+|.....+...
T Consensus 327 f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~ 361 (549)
T KOG0147|consen 327 FVNKEDARKALEQLNGFELAGRLIKVSVVTERVDT 361 (549)
T ss_pred EecHHHHHHHHHHhccceecCceEEEEEeeeeccc
Confidence 99999999999999999999999998887765443
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.85 E-value=8.8e-20 Score=178.15 Aligned_cols=81 Identities=26% Similarity=0.482 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
...++|||+||+.++++++|+++|+.||.|.+|+|.++..++.++|||||+|.+.++|.+|++.||+..++|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 45679999999999999999999999999999999999988999999999999999999999999999999999999775
Q ss_pred C
Q 017119 102 S 102 (377)
Q Consensus 102 ~ 102 (377)
.
T Consensus 282 i 282 (612)
T TIGR01645 282 V 282 (612)
T ss_pred C
Confidence 4
No 33
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=4.2e-20 Score=172.42 Aligned_cols=162 Identities=35% Similarity=0.595 Sum_probs=144.4
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCc
Q 017119 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK 105 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 105 (377)
.|||.||+.+++..+|.++|+.||.|.+|++..+.. | ++|| ||+|.++++|++|++.+|+..+.++.|.|.....+.
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 399999999999999999999999999999999873 3 9999 999999999999999999999999999997765544
Q ss_pred cc-------cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCce
Q 017119 106 KS-------LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 178 (377)
Q Consensus 106 ~~-------~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~ 178 (377)
.. .....++||.|+..+++++.|.++|..+|.| ..+.++.+ ..+.+++|+||.|++.++|..|++.|++..
T Consensus 155 er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i-~s~~v~~~-~~g~~~~~gfv~f~~~e~a~~av~~l~~~~ 232 (369)
T KOG0123|consen 155 EREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSI-TSVAVMRD-SIGKSKGFGFVNFENPEDAKKAVETLNGKI 232 (369)
T ss_pred hhcccccchhhhhhhhheeccccccchHHHHHhhcccCcc-eEEEEeec-CCCCCCCccceeecChhHHHHHHHhccCCc
Confidence 22 1223469999999999999999999999998 56678877 556699999999999999999999999999
Q ss_pred ecCeeeEEeeeeec
Q 017119 179 LCNRQITVSYAYKK 192 (377)
Q Consensus 179 ~~g~~l~v~~a~~~ 192 (377)
+.++.+.|..+.++
T Consensus 233 ~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 233 FGDKELYVGRAQKK 246 (369)
T ss_pred CCccceeecccccc
Confidence 99999999888763
No 34
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=1.3e-19 Score=145.96 Aligned_cols=149 Identities=23% Similarity=0.307 Sum_probs=126.7
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
+.+++|||+||+.++.+.||.++|-+||.|.+|.+..-. ..-.||||+|++..+|+.||..-++..++|+.|+|++.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 467899999999999999999999999999999885432 23469999999999999999999999999999999987
Q ss_pred CcCc-------------------------cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcce
Q 017119 102 SQDK-------------------------KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGF 156 (377)
Q Consensus 102 ~~~~-------------------------~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~ 156 (377)
..-. ........|.|.+|+...+++||++++.+.|+|. ...+.+| |+
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvC-fadv~rD-------g~ 152 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVC-FADVQRD-------GV 152 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCee-eeeeecc-------cc
Confidence 5542 1223345799999999999999999999999983 3355554 47
Q ss_pred EEEEeCCHHHHHHHHHHHcCceecC
Q 017119 157 GFISYDSFEASDAAIEAMNGQYLCN 181 (377)
Q Consensus 157 afV~f~~~~~A~~a~~~l~~~~~~g 181 (377)
++|+|...++.+.|+.+|+...+..
T Consensus 153 GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 153 GVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred eeeeeeehhhHHHHHHhhccccccC
Confidence 9999999999999999999887753
No 35
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.80 E-value=1.3e-18 Score=145.66 Aligned_cols=162 Identities=26% Similarity=0.465 Sum_probs=139.0
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHH----HHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWE----LFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~----~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
+.+.+.||||.||...+..++|+. +|++||.|.+|...+ +.+.||.|||.|.+.+.|..|++.|+|.-+.|+.
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 445666999999999999999988 999999999998866 4678999999999999999999999999999999
Q ss_pred eEEeecCcCccc-------------------------------------------------cCCCCeEEEcCCCCcCCHH
Q 017119 96 IRVNKASQDKKS-------------------------------------------------LDVGANLFIGNLDPDVDEK 126 (377)
Q Consensus 96 i~v~~~~~~~~~-------------------------------------------------~~~~~~l~V~nl~~~~~~~ 126 (377)
+++.|+..+... ...+..||+.||+..++.+
T Consensus 82 mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e 161 (221)
T KOG4206|consen 82 MRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESE 161 (221)
T ss_pred hheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHH
Confidence 999988654311 1123469999999999999
Q ss_pred HHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceec-CeeeEEeeee
Q 017119 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC-NRQITVSYAY 190 (377)
Q Consensus 127 ~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~a~ 190 (377)
.+..+|++|... ++++++.. .++.|||+|.++..|..|.+.|++..+. ...|+|.+++
T Consensus 162 ~l~~lf~qf~g~-keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 162 MLSDLFEQFPGF-KEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHHhhCccc-ceeEeccC-----CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999886 66676654 3578999999999999999999999886 8888888875
No 36
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.78 E-value=4.4e-18 Score=153.85 Aligned_cols=164 Identities=27% Similarity=0.411 Sum_probs=140.7
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHH-hcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 23 QDATAYVGNLDPQVTEELLWELFV-QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
..+.+||+||+++..+++|+++|+ +.|+|+.|.+..|. .+++||||.|+|++.|.++||++.|+++++.||.|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 445699999999999999999997 56899999999987 6899999999999999999999999999999999999654
Q ss_pred CcCccc-------------------------------------------------c------------------------
Q 017119 102 SQDKKS-------------------------------------------------L------------------------ 108 (377)
Q Consensus 102 ~~~~~~-------------------------------------------------~------------------------ 108 (377)
...... .
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 321000 0
Q ss_pred -----------CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 109 -----------DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 109 -----------~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
....++||.||.+.+....|++.|.-.|.+ +.+.+-.|+. |.++|||.++|++.-+|.+||..|++.
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv-~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKV-QSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceee-eeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccC
Confidence 001269999999999999999999999996 7888888854 699999999999999999999999998
Q ss_pred eecCeeeEEeee
Q 017119 178 YLCNRQITVSYA 189 (377)
Q Consensus 178 ~~~g~~l~v~~a 189 (377)
-+.++.+.++..
T Consensus 280 g~~~~~~~~Rl~ 291 (608)
T KOG4212|consen 280 GLFDRRMTVRLD 291 (608)
T ss_pred CCccccceeecc
Confidence 888888877764
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=7e-18 Score=137.43 Aligned_cols=92 Identities=30% Similarity=0.421 Sum_probs=83.9
Q ss_pred CCCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 14 ~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
.+........+++|||+||+++++|++|+++|++||.|.+|+++.|..++.++|||||+|.+.++|++|++.|++..|.|
T Consensus 24 ~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G 103 (144)
T PLN03134 24 TSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG 103 (144)
T ss_pred ccccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 33444446678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeecCcCc
Q 017119 94 KPIRVNKASQDK 105 (377)
Q Consensus 94 ~~i~v~~~~~~~ 105 (377)
+.|+|+++..+.
T Consensus 104 r~l~V~~a~~~~ 115 (144)
T PLN03134 104 RHIRVNPANDRP 115 (144)
T ss_pred EEEEEEeCCcCC
Confidence 999999987654
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.76 E-value=3e-18 Score=159.76 Aligned_cols=162 Identities=28% Similarity=0.440 Sum_probs=131.2
Q ss_pred EEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCcc
Q 017119 27 AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK 106 (377)
Q Consensus 27 l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~ 106 (377)
||||||..+++|++|+.+|+.||.|..|.+.+|.++|.++||+||+|.+.++|++|++.||+.++.|+.|+|........
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999854322110
Q ss_pred cc------------------------------------------------------------------------------
Q 017119 107 SL------------------------------------------------------------------------------ 108 (377)
Q Consensus 107 ~~------------------------------------------------------------------------------ 108 (377)
..
T Consensus 361 ~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~ 440 (549)
T KOG0147|consen 361 TKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFD 440 (549)
T ss_pred cccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccC
Confidence 00
Q ss_pred CCCCeEEEcCCCCcC----------CHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCce
Q 017119 109 DVGANLFIGNLDPDV----------DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 178 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~----------~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~ 178 (377)
-.+.|+.+.|+-+.- -.+||++.+++||.|+ .|..|++ +-|+.||.|.+.+.|..|+.+|||..
T Consensus 441 i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~---hi~vd~n---s~g~VYvrc~s~~~A~~a~~alhgrW 514 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVC---HIFVDKN---SAGCVYVRCPSAEAAGTAVKALHGRW 514 (549)
T ss_pred CccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCee---EEEEccC---CCceEEEecCcHHHHHHHHHHHhhhh
Confidence 001133444442111 1467888999999984 5555532 34999999999999999999999999
Q ss_pred ecCeeeEEeeeeecCc
Q 017119 179 LCNRQITVSYAYKKDT 194 (377)
Q Consensus 179 ~~g~~l~v~~a~~~~~ 194 (377)
|.|+.|++.|-.....
T Consensus 515 F~gr~Ita~~~~~~~Y 530 (549)
T KOG0147|consen 515 FAGRMITAKYLPLERY 530 (549)
T ss_pred hccceeEEEEeehhhh
Confidence 9999999999876543
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=1.7e-17 Score=135.12 Aligned_cols=85 Identities=38% Similarity=0.628 Sum_probs=78.7
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..+++++|..++++||||||+|++.++|++|++.|++..|+|+.|+|+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDV-VDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCe-EEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445689999999999999999999999998 678999999999999999999999999999999999999999999999
Q ss_pred eeeecC
Q 017119 188 YAYKKD 193 (377)
Q Consensus 188 ~a~~~~ 193 (377)
|+..+.
T Consensus 110 ~a~~~~ 115 (144)
T PLN03134 110 PANDRP 115 (144)
T ss_pred eCCcCC
Confidence 997653
No 40
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.72 E-value=1e-16 Score=147.69 Aligned_cols=167 Identities=20% Similarity=0.291 Sum_probs=132.7
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
+-.....|.+++|||++|++||++||+.|+ |+++++.+ .+++..|-|||+|+++|++++|++ ++...+..|.|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 556777899999999999999999999984 77766544 468899999999999999999999 77788889999997
Q ss_pred ecCcCccc----------cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHH
Q 017119 100 KASQDKKS----------LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDA 169 (377)
Q Consensus 100 ~~~~~~~~----------~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~ 169 (377)
.+...+.. ......|-+++|+|.++++||.++|+-.-.+-..+.+..+ ..++..|-|||+|++.++|++
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHH
Confidence 76444311 1234568899999999999999999875433222344555 567789999999999999999
Q ss_pred HHHHHcCceecCeeeEEeeeeec
Q 017119 170 AIEAMNGQYLCNRQITVSYAYKK 192 (377)
Q Consensus 170 a~~~l~~~~~~g~~l~v~~a~~~ 192 (377)
|+.. +...|.-+-|.|..+...
T Consensus 161 Al~r-hre~iGhRYIEvF~Ss~~ 182 (510)
T KOG4211|consen 161 ALGR-HRENIGHRYIEVFRSSRA 182 (510)
T ss_pred HHHH-HHHhhccceEEeehhHHH
Confidence 9985 666677777777766544
No 41
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=2.3e-17 Score=139.78 Aligned_cols=149 Identities=28% Similarity=0.436 Sum_probs=127.7
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcC
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD 104 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 104 (377)
..|||++|++.+.+.+|..||.+||.|.+|.+ ..||+||+|.+..+|..|+..|++..+.+..+.++++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m--------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM--------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee--------ecccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 36999999999999999999999999999987 3468999999999999999999999999988888887732
Q ss_pred cc-------------------ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHH
Q 017119 105 KK-------------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFE 165 (377)
Q Consensus 105 ~~-------------------~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~ 165 (377)
.. .....+.++|.++..++.+.+|.+.|+.+|.+ ....+ .++++||+|++.+
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~-~~~~~--------~~~~~~v~Fs~~~ 144 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEV-TYVDA--------RRNFAFVEFSEQE 144 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCC-chhhh--------hccccceeehhhh
Confidence 10 01234579999999999999999999999998 33222 4568999999999
Q ss_pred HHHHHHHHHcCceecCeeeEEeeee
Q 017119 166 ASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 166 ~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
+|.+|++.|++..+.++.|++.+..
T Consensus 145 da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 145 DAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred hhhhcchhccchhhcCceeeecccC
Confidence 9999999999999999999995443
No 42
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=1.9e-16 Score=140.27 Aligned_cols=85 Identities=26% Similarity=0.468 Sum_probs=79.0
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
.+++-+.-++|||..+..+++|+||+..|+.||+|..|.+.++...+.+|||+||+|.+..+...|+..+|-..++|..+
T Consensus 203 vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyL 282 (544)
T KOG0124|consen 203 VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 282 (544)
T ss_pred HHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceE
Confidence 34555678899999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEeec
Q 017119 97 RVNKA 101 (377)
Q Consensus 97 ~v~~~ 101 (377)
+|..+
T Consensus 283 RVGk~ 287 (544)
T KOG0124|consen 283 RVGKC 287 (544)
T ss_pred ecccc
Confidence 99655
No 43
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.68 E-value=3.8e-14 Score=136.95 Aligned_cols=77 Identities=26% Similarity=0.401 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
=++|||||+|+++++|+||.++|++||.|.+|+++- .++||||.+...++|.+|+.+|++..+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 368999999999999999999999999999999944 67899999999999999999999999999999999987
Q ss_pred cCc
Q 017119 103 QDK 105 (377)
Q Consensus 103 ~~~ 105 (377)
..-
T Consensus 494 g~G 496 (894)
T KOG0132|consen 494 GKG 496 (894)
T ss_pred cCC
Confidence 664
No 44
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=126.74 Aligned_cols=157 Identities=22% Similarity=0.315 Sum_probs=119.7
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEec-cCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC---C
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPK-DRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY---G 93 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~-~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~---g 93 (377)
.++...-+||||.+|+.|+.-.||..+|+.|-.-+.+.+.. ++.....+-+|||+|.+..+|..|+..||++.|+ +
T Consensus 28 ~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~ 107 (284)
T KOG1457|consen 28 ADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETG 107 (284)
T ss_pred cccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccC
Confidence 34456689999999999999999999999996656655543 3333445679999999999999999999999888 5
Q ss_pred ceeEEeecCcCccccCC---------------------------------------------------------------
Q 017119 94 KPIRVNKASQDKKSLDV--------------------------------------------------------------- 110 (377)
Q Consensus 94 ~~i~v~~~~~~~~~~~~--------------------------------------------------------------- 110 (377)
..|+++.++.+.+..+.
T Consensus 108 stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~ 187 (284)
T KOG1457|consen 108 STLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPD 187 (284)
T ss_pred ceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhh
Confidence 67777766433110000
Q ss_pred ----------------------CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHH
Q 017119 111 ----------------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 168 (377)
Q Consensus 111 ----------------------~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~ 168 (377)
-.+|||.||..+++|++|+.+|+.|-.. ...+| + . ...-..||++|++.+.|.
T Consensus 188 ~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf-~~l~~-~--~-~~g~~vaf~~~~~~~~at 262 (284)
T KOG1457|consen 188 SKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGF-HILKI-R--A-RGGMPVAFADFEEIEQAT 262 (284)
T ss_pred hcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCc-eEEEE-e--c-CCCcceEeecHHHHHHHH
Confidence 0169999999999999999999999654 22232 1 2 223457999999999999
Q ss_pred HHHHHHcCcee
Q 017119 169 AAIEAMNGQYL 179 (377)
Q Consensus 169 ~a~~~l~~~~~ 179 (377)
.|+..|+|..|
T Consensus 263 ~am~~lqg~~~ 273 (284)
T KOG1457|consen 263 DAMNHLQGNLL 273 (284)
T ss_pred HHHHHhhccee
Confidence 99999998766
No 45
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.68 E-value=2.8e-15 Score=132.38 Aligned_cols=168 Identities=22% Similarity=0.352 Sum_probs=135.0
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEE--------EEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVN--------VYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY 92 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~ 92 (377)
...+..|||.|||.++|.+++.++|.+||.|.. |++.++.. |.-+|-|+|.|...++...|+..|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 345667999999999999999999999997754 78877764 889999999999999999999999999999
Q ss_pred CceeEEeecCcCc-------------------------------------cccCCCCeEEEcCCCC----cCC-------
Q 017119 93 GKPIRVNKASQDK-------------------------------------KSLDVGANLFIGNLDP----DVD------- 124 (377)
Q Consensus 93 g~~i~v~~~~~~~-------------------------------------~~~~~~~~l~V~nl~~----~~~------- 124 (377)
|+.|+|..+.-.. ......++|.+.|+-- ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999997663210 0112245788888732 222
Q ss_pred HHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecCc
Q 017119 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDT 194 (377)
Q Consensus 125 ~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~~ 194 (377)
.++|.+-+++||.| ..+.|. | ....|.+.|.|.+.++|..||+.|+|+.|+||.|..+....+..
T Consensus 290 kedl~eec~K~G~v-~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~ 354 (382)
T KOG1548|consen 290 KEDLTEECEKFGQV-RKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTK 354 (382)
T ss_pred HHHHHHHHHHhCCc-ceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcce
Confidence 46777889999998 454443 3 24678899999999999999999999999999999887765543
No 46
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=6.8e-16 Score=130.16 Aligned_cols=85 Identities=32% Similarity=0.470 Sum_probs=80.2
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
+.+..++|-|.||+.+++|++|.++|..||.| ..+.|.+|++||.+||||||.|.+.++|.+||+.|||.-++.-.|+|
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i-~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPI-TRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCcc-ceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 44567889999999999999999999999998 67899999999999999999999999999999999999999999999
Q ss_pred eeeeec
Q 017119 187 SYAYKK 192 (377)
Q Consensus 187 ~~a~~~ 192 (377)
+|++.+
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999864
No 47
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.65 E-value=1e-15 Score=146.71 Aligned_cols=164 Identities=26% Similarity=0.371 Sum_probs=132.3
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
.++..+.|+|+||+..+..++|...|..||.|..+.+-. .| .-++|+|.+..+|++|++.|....+....+++.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~---~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPP---GG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCc---cc---ceeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 667889999999999999999999999999999995531 12 258999999999999999999888877777766
Q ss_pred ecCcCccc-------------------------------------------------cCCCCeEEEcCCCCcCCHHHHHH
Q 017119 100 KASQDKKS-------------------------------------------------LDVGANLFIGNLDPDVDEKLLYD 130 (377)
Q Consensus 100 ~~~~~~~~-------------------------------------------------~~~~~~l~V~nl~~~~~~~~l~~ 130 (377)
|+-..... ....++|||.||+++++.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 54211000 00012399999999999999999
Q ss_pred HHhhcCCeeecceeecCCCC---CCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 131 TFSAFGVIVTNPKIMRDPDT---GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 131 ~f~~~G~vv~~~~i~~d~~~---~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
+|..+|.|++ +.|...++. -.+.|||||+|.+.++|+.|++.|+|..|+|+.|.|+++.
T Consensus 535 ~F~k~G~VlS-~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 535 LFSKQGTVLS-IEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHHhcCeEEE-EEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999854 444333221 2366999999999999999999999999999999999998
No 48
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=9.4e-16 Score=129.31 Aligned_cols=87 Identities=37% Similarity=0.520 Sum_probs=82.3
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
..+.+.+.+|.|.||+.+++|++|+++|..||.|..|.+.+|+.+|.+||||||+|.+.++|++||+.|+++-++.-.|+
T Consensus 183 ~R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILr 262 (270)
T KOG0122|consen 183 MRERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILR 262 (270)
T ss_pred cccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEE
Confidence 34556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCcC
Q 017119 98 VNKASQD 104 (377)
Q Consensus 98 v~~~~~~ 104 (377)
|+|++.+
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9998754
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=1.4e-15 Score=108.52 Aligned_cols=70 Identities=47% Similarity=0.730 Sum_probs=67.0
Q ss_pred EEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 27 AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 27 l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
|||+||+.++++++|+++|++||.|..+++..+ .++..+++|||+|.+.++|++|++.+++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999997 5788999999999999999999999999999999886
No 50
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=7.6e-16 Score=116.90 Aligned_cols=85 Identities=32% Similarity=0.517 Sum_probs=80.1
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
-+.++||||+||++.++|++|.++|+++|.|..|.+-.|+.+....|||||+|.+.++|+.|++.++++.++.+.|++.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCcCc
Q 017119 101 ASQDK 105 (377)
Q Consensus 101 ~~~~~ 105 (377)
...-.
T Consensus 113 D~GF~ 117 (153)
T KOG0121|consen 113 DAGFV 117 (153)
T ss_pred cccch
Confidence 76544
No 51
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.62 E-value=9.6e-15 Score=133.06 Aligned_cols=148 Identities=37% Similarity=0.519 Sum_probs=115.3
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC-
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS- 102 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~- 102 (377)
.++|||+||+.++++++|+++|.+||.|..+.+..++.++.++|||||+|.+.++|.+|++.+++..+.|+.|+|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999998899999999999999999999999999999999999999953
Q ss_pred ---cCccc-------------------cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEE
Q 017119 103 ---QDKKS-------------------LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFIS 160 (377)
Q Consensus 103 ---~~~~~-------------------~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~ 160 (377)
..... ......++++++...++..++..+|..+|.+. ...+...........+.++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIV-RASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccce-eeeccCCCCCcccccccccc
Confidence 11111 11234699999999999999999999999883 33443332222233333344
Q ss_pred eCCHHHHHHHHH
Q 017119 161 YDSFEASDAAIE 172 (377)
Q Consensus 161 f~~~~~A~~a~~ 172 (377)
+.....+...+.
T Consensus 274 ~~~~~~~~~~~~ 285 (306)
T COG0724 274 NEASKDALESNS 285 (306)
T ss_pred hhHHHhhhhhhc
Confidence 433433333333
No 52
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.61 E-value=2.1e-15 Score=140.21 Aligned_cols=85 Identities=35% Similarity=0.579 Sum_probs=78.9
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+||++++++++|+++|+.||.| .+|+|++|..++++||||||+|.++++|++||+.|++..+.++.|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V-~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPI-NTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 33456799999999999999999999999998 67899999999999999999999999999999999999999999999
Q ss_pred eeeeec
Q 017119 187 SYAYKK 192 (377)
Q Consensus 187 ~~a~~~ 192 (377)
+|++..
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998754
No 53
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.4e-15 Score=127.86 Aligned_cols=82 Identities=33% Similarity=0.394 Sum_probs=74.8
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
...-.+||||||.|++..++|+++|++||+|.+..|+.|+.++++|||+||+|+|.|+|.+|++ --+-.|+||+..|+.
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccch
Confidence 3456799999999999999999999999999999999999999999999999999999999998 345568999999988
Q ss_pred cCc
Q 017119 101 ASQ 103 (377)
Q Consensus 101 ~~~ 103 (377)
+.-
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 765
No 54
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=99.59 E-value=9.8e-14 Score=122.53 Aligned_cols=82 Identities=18% Similarity=0.260 Sum_probs=73.4
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCe-eecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVI-VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~v-v~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||||-||+|++||.+++...|.- +.++++++++.+|++||||+|...++.+.++.++.|..+.|.|+.-.|.-.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4589999999999999999999988865 567899999999999999999999999999999999999999988777655
Q ss_pred eec
Q 017119 190 YKK 192 (377)
Q Consensus 190 ~~~ 192 (377)
.+.
T Consensus 160 NK~ 162 (498)
T KOG4849|consen 160 NKT 162 (498)
T ss_pred chh
Confidence 444
No 55
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.59 E-value=3.8e-15 Score=134.04 Aligned_cols=167 Identities=23% Similarity=0.326 Sum_probs=126.2
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCc--ccCCcee
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMI--KLYGKPI 96 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~--~~~g~~i 96 (377)
.....++.|.++||+++++|+||.+++..||.|+.+.+.+. +..||++|.|+++|...+..+..+ .+.|+.|
T Consensus 23 ~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG------knQAflem~d~~sAvtmv~~y~~~~p~lr~~~~ 96 (492)
T KOG1190|consen 23 SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG------KNQAFLEMADEESAVTMVNYYTSVTPVLRGQPI 96 (492)
T ss_pred cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeecc------chhhhhhhcchhhhhheeecccccCccccCcce
Confidence 33457899999999999999999999999999999998664 347999999999998855544332 3556666
Q ss_pred EEeecCcCcc-------------------------------ccC--------CCCeEEEcCCCCcCCHHHHHHHHhhcCC
Q 017119 97 RVNKASQDKK-------------------------------SLD--------VGANLFIGNLDPDVDEKLLYDTFSAFGV 137 (377)
Q Consensus 97 ~v~~~~~~~~-------------------------------~~~--------~~~~l~V~nl~~~~~~~~l~~~f~~~G~ 137 (377)
.|.++..... ... .--.++|+|+-+.++-+.|+.+|++||.
T Consensus 97 yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~ 176 (492)
T KOG1190|consen 97 YIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF 176 (492)
T ss_pred eehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce
Confidence 6655422110 000 0114789999999999999999999999
Q ss_pred eeecceeecCCCCCCCcce-EEEEeCCHHHHHHHHHHHcCceecC--eeeEEeeeeecCcCCc
Q 017119 138 IVTNPKIMRDPDTGNSRGF-GFISYDSFEASDAAIEAMNGQYLCN--RQITVSYAYKKDTKGE 197 (377)
Q Consensus 138 vv~~~~i~~d~~~~~~kg~-afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~a~~~~~~~~ 197 (377)
|.+.+.+.++ .+| |+|.|.+.++|..|...|+|+.|.+ +.|+|+|++-.....+
T Consensus 177 VlKIiTF~Kn------n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvK 233 (492)
T KOG1190|consen 177 VLKIITFTKN------NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVK 233 (492)
T ss_pred eEEEEEEecc------cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceee
Confidence 9755444332 334 8999999999999999999998864 6788888876554433
No 56
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=5.2e-15 Score=129.78 Aligned_cols=89 Identities=25% Similarity=0.341 Sum_probs=80.7
Q ss_pred CCCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 14 ~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
.+.++...+..++|+|.||++...|.||+..|++||.|.+|.|+.+. .-+|||+||+|++.+||++|.++||+..+.|
T Consensus 86 ~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEG 163 (376)
T KOG0125|consen 86 PSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEG 163 (376)
T ss_pred CCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeec
Confidence 34455556778899999999999999999999999999999999886 4589999999999999999999999999999
Q ss_pred ceeEEeecCcC
Q 017119 94 KPIRVNKASQD 104 (377)
Q Consensus 94 ~~i~v~~~~~~ 104 (377)
|.|.|+.+...
T Consensus 164 RkIEVn~ATar 174 (376)
T KOG0125|consen 164 RKIEVNNATAR 174 (376)
T ss_pred eEEEEeccchh
Confidence 99999998765
No 57
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=1.3e-14 Score=137.37 Aligned_cols=178 Identities=24% Similarity=0.326 Sum_probs=137.7
Q ss_pred CCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCc
Q 017119 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK 94 (377)
Q Consensus 15 ~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~ 94 (377)
............+||++|+..+++.+++++++.||.+....++.+..++.++||||.+|.+......|+..||++.+.++
T Consensus 280 ~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~ 359 (500)
T KOG0120|consen 280 PASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK 359 (500)
T ss_pred ccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc
Confidence 34445556788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCcCccccCC-----------------------CCeEEEcCC------CCcC----CHHHHHHHHhhcCCeeec
Q 017119 95 PIRVNKASQDKKSLDV-----------------------GANLFIGNL------DPDV----DEKLLYDTFSAFGVIVTN 141 (377)
Q Consensus 95 ~i~v~~~~~~~~~~~~-----------------------~~~l~V~nl------~~~~----~~~~l~~~f~~~G~vv~~ 141 (377)
.|.|..+......... ...|.+.|+ -++. -.|+|+..|.+||.| ..
T Consensus 360 ~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v-~~ 438 (500)
T KOG0120|consen 360 KLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAV-RS 438 (500)
T ss_pred eeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCce-eE
Confidence 9988766433211100 111222222 1111 124566677889988 55
Q ss_pred ceeecCC---CCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecC
Q 017119 142 PKIMRDP---DTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193 (377)
Q Consensus 142 ~~i~~d~---~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~ 193 (377)
|.+-++. .-.-..|..||+|.+.+++++|++.|.|+++.|+.|.+.|-....
T Consensus 439 v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 439 VEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred EecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 6665552 223456678999999999999999999999999999999976543
No 58
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=2.7e-15 Score=113.92 Aligned_cols=82 Identities=26% Similarity=0.415 Sum_probs=75.4
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
...+++|||+||++.++||+|+++|+++|.| ..|.+-.|+.+....|||||+|.+.++|+.|++.+++..++.+.|+|.
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~i-rriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDI-RRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccch-heeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 3456799999999999999999999999998 666677888888999999999999999999999999999999999999
Q ss_pred eee
Q 017119 188 YAY 190 (377)
Q Consensus 188 ~a~ 190 (377)
|..
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 975
No 59
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.58 E-value=6.4e-14 Score=126.26 Aligned_cols=159 Identities=26% Similarity=0.390 Sum_probs=134.3
Q ss_pred CCCeEEEcCCC-cCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 23 QDATAYVGNLD-PQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 23 ~~~~l~v~nLp-~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
.+..|.|.||. ..+|.+-|--+|.-||.|.+|+|+.++. ..|+|+|.|...|+.|++.|++..++|+.|+|.++
T Consensus 296 ~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 296 ANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred CceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 37889999986 4589999999999999999999988763 46999999999999999999999999999999998
Q ss_pred CcCcccc----------------------------------CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecC
Q 017119 102 SQDKKSL----------------------------------DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 147 (377)
Q Consensus 102 ~~~~~~~----------------------------------~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d 147 (377)
+...... ....+|.+.|++.+++||+|+.+|.+-|..++..+++
T Consensus 371 KH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff-- 448 (492)
T KOG1190|consen 371 KHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF-- 448 (492)
T ss_pred cCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeec--
Confidence 6543111 0123688999999999999999999999887665553
Q ss_pred CCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC-eeeEEeeeee
Q 017119 148 PDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN-RQITVSYAYK 191 (377)
Q Consensus 148 ~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g-~~l~v~~a~~ 191 (377)
++.+.++++.+++.++|..|+-.+++..+.+ ..++|+|++.
T Consensus 449 ---~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 449 ---QKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ---CCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 3456689999999999999999999998875 5899999864
No 60
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=9.5e-15 Score=104.21 Aligned_cols=70 Identities=43% Similarity=0.815 Sum_probs=65.8
Q ss_pred EEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeE
Q 017119 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185 (377)
Q Consensus 114 l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 185 (377)
|||+||+.++++++|+++|++||.+ ..+.+..+ .++..++||||+|.+.++|++|++.|++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i-~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKI-ESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTE-EEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhc-cccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999998 56788887 7889999999999999999999999999999999885
No 61
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=4.4e-15 Score=122.07 Aligned_cols=85 Identities=27% Similarity=0.395 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
+....|.|.||.+.++-++|+.+|++||.| .+|.|.+|+.|+.++|||||.|.+..+|+.|+++|+|..|+|+.|+|.+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~v-gDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ 89 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRV-GDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQM 89 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcc-cceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehh
Confidence 344689999999999999999999999998 6899999999999999999999999999999999999999999999999
Q ss_pred eeecCc
Q 017119 189 AYKKDT 194 (377)
Q Consensus 189 a~~~~~ 194 (377)
|+-...
T Consensus 90 arygr~ 95 (256)
T KOG4207|consen 90 ARYGRP 95 (256)
T ss_pred hhcCCC
Confidence 875543
No 62
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.2e-14 Score=126.04 Aligned_cols=89 Identities=29% Similarity=0.443 Sum_probs=81.3
Q ss_pred cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeE
Q 017119 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185 (377)
Q Consensus 106 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 185 (377)
...+.-+||||+.|+++++|.+|+..|+.||.| +.+.|++|..||+++|||||+|+++.+...|.+..++.+|+|+.|.
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~I-krirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPI-KRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcc-eeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 334556799999999999999999999999998 7889999999999999999999999999999999999999999999
Q ss_pred EeeeeecCcC
Q 017119 186 VSYAYKKDTK 195 (377)
Q Consensus 186 v~~a~~~~~~ 195 (377)
|.+-.....+
T Consensus 175 VDvERgRTvk 184 (335)
T KOG0113|consen 175 VDVERGRTVK 184 (335)
T ss_pred EEeccccccc
Confidence 9987655543
No 63
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=4.8e-15 Score=124.64 Aligned_cols=78 Identities=27% Similarity=0.519 Sum_probs=71.7
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeee
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 191 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~ 191 (377)
.+||||+|.|.++.|+|++.|++||+|+ +..|+.|+.+|++|||+||+|.|.++|.+|++. .+-.|+||+..|++|.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~-eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIV-EAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceE-EEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 5799999999999999999999999995 668889999999999999999999999999984 46689999999998865
No 64
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.55 E-value=2.3e-14 Score=102.31 Aligned_cols=70 Identities=41% Similarity=0.672 Sum_probs=64.8
Q ss_pred EEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 27 AYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 27 l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
|||+||+.++++++|+++|+.||.|..+++..++. +..+++|||+|.+.++|++|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 88999999999999999999999998999999875
No 65
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=5.4e-16 Score=124.88 Aligned_cols=85 Identities=29% Similarity=0.524 Sum_probs=78.0
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
...+.-||||||++.+||.||..+|++||++| +|.+++|+.||+++||||+.|++..+...|++.|||..|.||.|+|.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~v-dinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIV-DINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceE-EEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 34456799999999999999999999999995 78999999999999999999999999999999999999999999998
Q ss_pred eeeecC
Q 017119 188 YAYKKD 193 (377)
Q Consensus 188 ~a~~~~ 193 (377)
......
T Consensus 111 Hv~~Yk 116 (219)
T KOG0126|consen 111 HVSNYK 116 (219)
T ss_pred eccccc
Confidence 776543
No 66
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=2.4e-14 Score=125.68 Aligned_cols=99 Identities=24% Similarity=0.431 Sum_probs=79.7
Q ss_pred ccCCceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHH
Q 017119 90 KLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDA 169 (377)
Q Consensus 90 ~~~g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~ 169 (377)
..+|..+.+..+... ...+..++|+|.||++...|.||+.+|++||.|+ +|.|+.+ ...+|||+||+|++.+||++
T Consensus 76 ~t~g~~~~~~~st~s-~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~Vl-dVEIIfN--ERGSKGFGFVTmen~~dadR 151 (376)
T KOG0125|consen 76 PTDGQPIQTQPSTNS-SSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVL-DVEIIFN--ERGSKGFGFVTMENPADADR 151 (376)
T ss_pred CCCCCccccCCCCcC-CCCCCCceeEeecCCccccCccHHHHHHhhCcee-eEEEEec--cCCCCccceEEecChhhHHH
Confidence 344444444333322 2334456899999999999999999999999994 6666655 24789999999999999999
Q ss_pred HHHHHcCceecCeeeEEeeeeec
Q 017119 170 AIEAMNGQYLCNRQITVSYAYKK 192 (377)
Q Consensus 170 a~~~l~~~~~~g~~l~v~~a~~~ 192 (377)
|.++|+|..+.||+|+|+.++..
T Consensus 152 ARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 152 ARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHHhhcceeeceEEEEeccchh
Confidence 99999999999999999999865
No 67
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=8.2e-16 Score=123.84 Aligned_cols=91 Identities=29% Similarity=0.467 Sum_probs=84.8
Q ss_pred CCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCc
Q 017119 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK 94 (377)
Q Consensus 15 ~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~ 94 (377)
..+.++-..+.-||||||++++||.||.-.|++||+|.+|.+++|+.||+++||||+-|++..+...|+..||++.|.||
T Consensus 26 ~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR 105 (219)
T KOG0126|consen 26 KSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR 105 (219)
T ss_pred cchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce
Confidence 35677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCcCc
Q 017119 95 PIRVNKASQDK 105 (377)
Q Consensus 95 ~i~v~~~~~~~ 105 (377)
.|+|......+
T Consensus 106 tirVDHv~~Yk 116 (219)
T KOG0126|consen 106 TIRVDHVSNYK 116 (219)
T ss_pred eEEeeeccccc
Confidence 99998765443
No 68
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=5.1e-14 Score=122.14 Aligned_cols=89 Identities=28% Similarity=0.423 Sum_probs=82.1
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
......+.-+||||+-|+++++|.+|+..|+.||.|+.|.|+.|..+++++|||||+|+++.+...|.+..+++.|+|+.
T Consensus 93 dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrr 172 (335)
T KOG0113|consen 93 DPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRR 172 (335)
T ss_pred CCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcE
Confidence 33444578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCcC
Q 017119 96 IRVNKASQD 104 (377)
Q Consensus 96 i~v~~~~~~ 104 (377)
|.|.+....
T Consensus 173 i~VDvERgR 181 (335)
T KOG0113|consen 173 ILVDVERGR 181 (335)
T ss_pred EEEEecccc
Confidence 999876544
No 69
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.53 E-value=1.9e-14 Score=135.56 Aligned_cols=81 Identities=40% Similarity=0.622 Sum_probs=78.6
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcC
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD 104 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 104 (377)
++||||||+++++|++|.++|++.|.|.+++++.|+++|+.+||||++|.+.++|++|++.|++.++.|+.|+|+|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998665
Q ss_pred c
Q 017119 105 K 105 (377)
Q Consensus 105 ~ 105 (377)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 70
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.52 E-value=5.8e-14 Score=122.34 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=71.5
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCc
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ 103 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 103 (377)
.++|||+||+++++|++|+++|+.||.|.+|+|..+.. .+|||||+|.+.++|++|+. |++..+.|+.|+|+++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999988763 57899999999999999996 999999999999999864
Q ss_pred C
Q 017119 104 D 104 (377)
Q Consensus 104 ~ 104 (377)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 71
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.52 E-value=3.1e-12 Score=123.96 Aligned_cols=80 Identities=23% Similarity=0.447 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
+++|||||+|+..++++||.++|+.||+| ..|+++ ..+|||||++.+.++|.+|+.+|++..+.++.|+|.|+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGei-qSi~li------~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEI-QSIILI------PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccc-eeEeec------cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 35789999999999999999999999998 455554 35889999999999999999999999999999999999
Q ss_pred eecCcCC
Q 017119 190 YKKDTKG 196 (377)
Q Consensus 190 ~~~~~~~ 196 (377)
..+..+.
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 9887766
No 72
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.52 E-value=2e-14 Score=118.26 Aligned_cols=88 Identities=28% Similarity=0.482 Sum_probs=81.7
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
.-+.+.-.+|.|-||.+.++.++|+.+|++||.|.+|.|.+|+.+..++|||||.|.+..+|++|++.|++..++|++|+
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCcCc
Q 017119 98 VNKASQDK 105 (377)
Q Consensus 98 v~~~~~~~ 105 (377)
|.++.-..
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 98876443
No 73
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=9.9e-15 Score=121.02 Aligned_cols=98 Identities=37% Similarity=0.589 Sum_probs=88.8
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
+...+..++||||+|-.+++|.-|...|-.||.|.+|.+..|.++.++||||||+|...|+|..|+..+|..++.||.|+
T Consensus 4 ~~~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grtir 83 (298)
T KOG0111|consen 4 QQMANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIR 83 (298)
T ss_pred ccccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEE
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCcCccccCCCCeEE
Q 017119 98 VNKASQDKKSLDVGANLF 115 (377)
Q Consensus 98 v~~~~~~~~~~~~~~~l~ 115 (377)
|+++...+.......-||
T Consensus 84 VN~AkP~kikegsqkPvW 101 (298)
T KOG0111|consen 84 VNLAKPEKIKEGSQKPVW 101 (298)
T ss_pred EeecCCccccCCCCCCcc
Confidence 999988876555544444
No 74
>PLN03213 repressor of silencing 3; Provisional
Probab=99.50 E-value=7.5e-14 Score=128.52 Aligned_cols=82 Identities=20% Similarity=0.313 Sum_probs=73.8
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCH--HHHHHHHHHhcCcccCCcee
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE--EDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~--e~A~~A~~~l~~~~~~g~~i 96 (377)
.+.....+||||||.++++++||+++|..||.|.+|.|+ +++| ||||||+|.+. +++++||+.|++..|.|+.|
T Consensus 5 es~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 5 SSGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred ccCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 345567899999999999999999999999999999999 4456 99999999987 78999999999999999999
Q ss_pred EEeecCcC
Q 017119 97 RVNKASQD 104 (377)
Q Consensus 97 ~v~~~~~~ 104 (377)
+|+.++..
T Consensus 81 KVNKAKP~ 88 (759)
T PLN03213 81 RLEKAKEH 88 (759)
T ss_pred EEeeccHH
Confidence 99988643
No 75
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=6.1e-14 Score=107.51 Aligned_cols=86 Identities=26% Similarity=0.383 Sum_probs=80.0
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
+...+.-.|||.++..+++|++|.+.|..||.|++|.+..|+.+|..+|||+|+|++.++|++|++.+|+..+.+..|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 34446678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcC
Q 017119 99 NKASQD 104 (377)
Q Consensus 99 ~~~~~~ 104 (377)
.|+-.+
T Consensus 147 Dw~Fv~ 152 (170)
T KOG0130|consen 147 DWCFVK 152 (170)
T ss_pred EEEEec
Confidence 997544
No 76
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.49 E-value=1.3e-13 Score=98.47 Aligned_cols=70 Identities=34% Similarity=0.686 Sum_probs=63.7
Q ss_pred EEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeE
Q 017119 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185 (377)
Q Consensus 114 l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 185 (377)
|||+||++++++++|+++|+.||.| ..+++.++++ +..+++|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v-~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPV-EKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBE-EEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCc-ceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999986 6889998877 89999999999999999999999999999999875
No 77
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=8.5e-14 Score=111.79 Aligned_cols=81 Identities=33% Similarity=0.597 Sum_probs=74.3
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
..-+++|||+||..++++.||+.+|..||.|.+|.|... .-|||||||++..+|++|+..|++..|.|..|+|+.
T Consensus 7 ~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 7 RNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred cCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 345889999999999999999999999999999999664 468999999999999999999999999999999999
Q ss_pred cCcCcc
Q 017119 101 ASQDKK 106 (377)
Q Consensus 101 ~~~~~~ 106 (377)
+.....
T Consensus 82 S~G~~r 87 (195)
T KOG0107|consen 82 STGRPR 87 (195)
T ss_pred ecCCcc
Confidence 987754
No 78
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=2.7e-13 Score=99.18 Aligned_cols=107 Identities=18% Similarity=0.214 Sum_probs=85.1
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
-..+.++.|||.||++++|.+++.++|.+||.|..|+|-.. ...+|.|||.|++..+|++|++.|++..+.++.+.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 34567899999999999999999999999999999999554 446799999999999999999999999999999999
Q ss_pred eecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCC
Q 017119 99 NKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGV 137 (377)
Q Consensus 99 ~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~ 137 (377)
.+-...+.... ....-.+++|..+-++||.
T Consensus 90 lyyq~~~~~~~---------~~~~k~~~~l~~~~~ky~i 119 (124)
T KOG0114|consen 90 LYYQPEDAFKL---------MDSRKAREELSILKEKYGI 119 (124)
T ss_pred EecCHHHHHHH---------HHhHHhhhHHHHHHHHhcc
Confidence 87654432111 1122335666666666663
No 79
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1.1e-13 Score=106.24 Aligned_cols=85 Identities=26% Similarity=0.538 Sum_probs=79.8
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
.....|||.++....++++|.+.|..||.| +.+.+-.|+.||..||||+|+|++.++|++|++.+|+..|.|+.|.|.|
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGei-KNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEI-KNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccc-cceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 345679999999999999999999999998 7889999999999999999999999999999999999999999999999
Q ss_pred eeecCc
Q 017119 189 AYKKDT 194 (377)
Q Consensus 189 a~~~~~ 194 (377)
+..+..
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 987654
No 80
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.47 E-value=1.3e-12 Score=118.69 Aligned_cols=72 Identities=33% Similarity=0.510 Sum_probs=65.0
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
|+|||+||+++.|++.|++.|..||.| ..+.|+ ++|++|| .|.|.+.++|++|+..+++..++|+.|+|+|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre~G~v-~yadim---e~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFREIGHV-LYADIM---ENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHhccce-ehhhhh---ccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 379999999999999999999999998 455664 5688887 89999999999999999999999999999874
No 81
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.46 E-value=1.1e-13 Score=111.87 Aligned_cols=82 Identities=38% Similarity=0.565 Sum_probs=77.5
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
.+...+|||+||+..++++.|+++|-+.|.|| .+++-+|+.+...+|||||+|.++++|+.|++.||..++.|+.|+|.
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv-~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVV-NLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCcee-eeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 44567999999999999999999999999985 78999999999999999999999999999999999999999999999
Q ss_pred eee
Q 017119 188 YAY 190 (377)
Q Consensus 188 ~a~ 190 (377)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 988
No 82
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=6.7e-13 Score=94.51 Aligned_cols=72 Identities=56% Similarity=0.851 Sum_probs=67.0
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
+|||+||+.++++++|+++|++||.|..+++..+. +.++++|||+|.+.++|++|++.+++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998776 6788999999999999999999999999999988763
No 83
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=5.8e-14 Score=116.50 Aligned_cols=86 Identities=35% Similarity=0.555 Sum_probs=80.4
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++||||+|.++++|..|..+|-.||.| .++.+..|.+++++|||+||+|+..++|..||+.+|+.+|.||.|+|.||
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI-~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDI-KDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccch-hhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 35799999999999999999999999998 68899999999999999999999999999999999999999999999999
Q ss_pred eecCcCC
Q 017119 190 YKKDTKG 196 (377)
Q Consensus 190 ~~~~~~~ 196 (377)
+..+.+.
T Consensus 88 kP~kike 94 (298)
T KOG0111|consen 88 KPEKIKE 94 (298)
T ss_pred CCccccC
Confidence 8765543
No 84
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=3.4e-13 Score=117.54 Aligned_cols=77 Identities=13% Similarity=0.275 Sum_probs=69.9
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
.++|||+||++.+++++|+++|+.||.| ..+.|.+|+. .+|||||+|.+.++|+.|+. |++..|.|+.|+|+++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I-~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDI-EYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 4689999999999999999999999998 6778887753 57899999999999999995 99999999999999987
Q ss_pred ec
Q 017119 191 KK 192 (377)
Q Consensus 191 ~~ 192 (377)
..
T Consensus 79 ~~ 80 (260)
T PLN03120 79 DY 80 (260)
T ss_pred CC
Confidence 54
No 85
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.7e-12 Score=119.66 Aligned_cols=157 Identities=21% Similarity=0.281 Sum_probs=118.3
Q ss_pred CCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEec-cC--CCCCccc---eEEEEeCCHHHHHHHHHHhcC
Q 017119 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPK-DR--VTNLHQG---YGFVEFRSEEDADYAIKVLNM 88 (377)
Q Consensus 15 ~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~-~~--~~~~~~g---~afV~f~~~e~A~~A~~~l~~ 88 (377)
.+......-+++||||+|+++++|++|.+.|..||.+. |.+-. .. ..-..+| |+|+.|+++.+.+..+.++..
T Consensus 250 ~~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~ 328 (520)
T KOG0129|consen 250 PRGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE 328 (520)
T ss_pred CCCCCccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence 34455567789999999999999999999999999753 23321 11 1123456 999999999999888776542
Q ss_pred ----c-------ccCCceeEEe--------ecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHh-hcCCeeecceeecCC
Q 017119 89 ----I-------KLYGKPIRVN--------KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFS-AFGVIVTNPKIMRDP 148 (377)
Q Consensus 89 ----~-------~~~g~~i~v~--------~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~-~~G~vv~~~~i~~d~ 148 (377)
. .+..+.+.|. +........+..+|||||+|+.-++.++|..+|+ .||.| ..+-|-.|.
T Consensus 329 ~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV-~yaGIDtD~ 407 (520)
T KOG0129|consen 329 GEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGV-LYVGIDTDP 407 (520)
T ss_pred cccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCce-EEEEeccCc
Confidence 1 1112222221 2223344567788999999999999999999999 78988 477888887
Q ss_pred CCCCCcceEEEEeCCHHHHHHHHHH
Q 017119 149 DTGNSRGFGFISYDSFEASDAAIEA 173 (377)
Q Consensus 149 ~~~~~kg~afV~f~~~~~A~~a~~~ 173 (377)
+.+..||-|-|.|.+.++-.+||++
T Consensus 408 k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 408 KLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCCCCCcceeeecccHHHHHHHhh
Confidence 8889999999999999999999985
No 86
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=7.9e-13 Score=113.39 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
..++|||+||+.++||++|+++|+.||.|.+|+|+++. ..++||||+|.+.++|+.|+. |++..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999884 445799999999999999997 99999999999998765
Q ss_pred cC
Q 017119 103 QD 104 (377)
Q Consensus 103 ~~ 104 (377)
..
T Consensus 80 ~y 81 (243)
T PLN03121 80 QY 81 (243)
T ss_pred cc
Confidence 43
No 87
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=3.5e-13 Score=108.32 Aligned_cols=79 Identities=20% Similarity=0.513 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||...+++.||..+|..||.+ ..|.|.++ .-|||||+|++..+|+.|+..|+++.|+|..|+|+++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~l-rsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPL-RSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcc-eeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 45789999999999999999999999987 55555443 5789999999999999999999999999999999999
Q ss_pred eecCc
Q 017119 190 YKKDT 194 (377)
Q Consensus 190 ~~~~~ 194 (377)
+....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 86644
No 88
>PLN03213 repressor of silencing 3; Provisional
Probab=99.43 E-value=4.1e-13 Score=123.73 Aligned_cols=81 Identities=20% Similarity=0.350 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCH--HHHHHHHHHHcCceecCeeeEE
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSF--EASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~--~~A~~a~~~l~~~~~~g~~l~v 186 (377)
....+||||||.+.++++||+++|..||.| ..+.|+ +.+| ||||||+|.+. .++.+||+.|||..+.|+.|+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsV-kdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTV-DAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 345689999999999999999999999998 677887 4566 99999999987 7899999999999999999999
Q ss_pred eeeeecCc
Q 017119 187 SYAYKKDT 194 (377)
Q Consensus 187 ~~a~~~~~ 194 (377)
+.|+..-.
T Consensus 83 NKAKP~YL 90 (759)
T PLN03213 83 EKAKEHYL 90 (759)
T ss_pred eeccHHHH
Confidence 99977643
No 89
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.42 E-value=7.4e-12 Score=111.82 Aligned_cols=168 Identities=21% Similarity=0.279 Sum_probs=130.8
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHh--cCcccCCceeEE
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL--NMIKLYGKPIRV 98 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l--~~~~~~g~~i~v 98 (377)
...+-.|.|++|-..++|.||.+.++.||.|..+..+- .+..|+|+|++.+.|+.|+... +.+.+.|..-.+
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P------~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP------HKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEecc------ccceeeeeeccccchhhheehhccCcccccCchhhc
Confidence 34567899999999999999999999999999888754 4457999999999999998743 456777888888
Q ss_pred eecCcCcccc------CCCCe--EEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHH
Q 017119 99 NKASQDKKSL------DVGAN--LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170 (377)
Q Consensus 99 ~~~~~~~~~~------~~~~~--l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a 170 (377)
+++..+..++ ..+.. +.|-|--+.+|.+.|+.++...|.|+. +.|++ ++|. -|+|+|++.+.|++|
T Consensus 102 NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlR-IvIfk--kngV---QAmVEFdsv~~AqrA 175 (494)
T KOG1456|consen 102 NYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLR-IVIFK--KNGV---QAMVEFDSVEVAQRA 175 (494)
T ss_pred ccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEE-EEEEe--ccce---eeEEeechhHHHHHH
Confidence 8885543221 11222 345677788999999999999999853 34433 3444 489999999999999
Q ss_pred HHHHcCceecC--eeeEEeeeeecCcCCcCCC
Q 017119 171 IEAMNGQYLCN--RQITVSYAYKKDTKGERHG 200 (377)
Q Consensus 171 ~~~l~~~~~~g--~~l~v~~a~~~~~~~~~~~ 200 (377)
...|||..|.. ..|+|+||+..+....+..
T Consensus 176 k~alNGADIYsGCCTLKIeyAkP~rlnV~knd 207 (494)
T KOG1456|consen 176 KAALNGADIYSGCCTLKIEYAKPTRLNVQKND 207 (494)
T ss_pred HhhcccccccccceeEEEEecCcceeeeeecC
Confidence 99999998863 7899999998876544433
No 90
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=1.7e-12 Score=118.51 Aligned_cols=113 Identities=26% Similarity=0.406 Sum_probs=89.0
Q ss_pred eCCHHHHHHHHHHhcCcccCCceeEEeecCcCc---------cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecce
Q 017119 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK---------KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143 (377)
Q Consensus 73 f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~---------~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~ 143 (377)
..+.|+|.++|..-. |..|.|+....+. ..-...+.||||.|+.++.|++|.-+|++.|+| -+++
T Consensus 41 ~~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I-~elR 114 (506)
T KOG0117|consen 41 VQSEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKI-YELR 114 (506)
T ss_pred cccHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccce-eeEE
Confidence 345677777776433 3344444332221 122456789999999999999999999999998 6789
Q ss_pred eecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceec-CeeeEEeeeee
Q 017119 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC-NRQITVSYAYK 191 (377)
Q Consensus 144 i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~a~~ 191 (377)
|+.|+.+|.+||||||.|.+.++|++||+.||+.+|. |+.|.|..+..
T Consensus 115 LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 115 LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 9999999999999999999999999999999999885 78887776543
No 91
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.5e-12 Score=92.38 Aligned_cols=71 Identities=48% Similarity=0.744 Sum_probs=66.5
Q ss_pred EcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 29 VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 29 v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
|+||+.++++++|+++|++||.|..+.+..+..++.++++|||+|.+.++|++|++.+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999888778899999999999999999999999999999988773
No 92
>smart00362 RRM_2 RNA recognition motif.
Probab=99.37 E-value=3.7e-12 Score=90.58 Aligned_cols=72 Identities=47% Similarity=0.787 Sum_probs=65.4
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
+|||+||+.++++++|+++|++||.+ ..+.+.++. +.++++|||+|.+.++|++|++.+++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v-~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPI-ESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCE-EEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999998 566777665 7789999999999999999999999999999998874
No 93
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.37 E-value=9.3e-13 Score=124.25 Aligned_cols=82 Identities=29% Similarity=0.599 Sum_probs=78.0
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeee
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 191 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~ 191 (377)
+.||||||++++++++|.++|+..|.| ..++++.|+++|+.|||+|++|.+.++|.+|++.||+.++.|+.|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v-~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPV-LSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCcc-ceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 689999999999999999999999998 4779999999999999999999999999999999999999999999999986
Q ss_pred cCc
Q 017119 192 KDT 194 (377)
Q Consensus 192 ~~~ 194 (377)
...
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 654
No 94
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.36 E-value=6.4e-12 Score=89.89 Aligned_cols=74 Identities=49% Similarity=0.724 Sum_probs=68.3
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
+|+|+||+.++++++|+++|+.||.|..+.+..+..+ ..+++|||+|.+.++|+.|++.+++..++|+.+.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999987654 6789999999999999999999999999999998864
No 95
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=3.8e-12 Score=90.18 Aligned_cols=71 Identities=45% Similarity=0.797 Sum_probs=65.3
Q ss_pred EcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 116 IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 116 V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
|+||++++++++|+++|+.||.+ ..+.+..+..++.++|||||+|.+.++|.+|++.+++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v-~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKI-ESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCE-eEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999998 567888887789999999999999999999999999999999998874
No 96
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.35 E-value=1.6e-12 Score=116.44 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=126.4
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhc----CCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQA----GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
.--.|.+++|++++++.||.+||..- |.++.|.++... +++-.|-|||.|..+++|+.|+. .|...++.|.|.+
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIEl 237 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIEL 237 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHH
Confidence 34578899999999999999999632 244555555543 58889999999999999999998 3444455555544
Q ss_pred eecCcCc------------------------------cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeec--ceeec
Q 017119 99 NKASQDK------------------------------KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN--PKIMR 146 (377)
Q Consensus 99 ~~~~~~~------------------------------~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~--~~i~~ 146 (377)
..+...+ .......+|-+++|++..+.|||.++|..|...+.. |.++.
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 3221110 111225689999999999999999999998765443 56666
Q ss_pred CCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeec
Q 017119 147 DPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192 (377)
Q Consensus 147 d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~ 192 (377)
+ ..|+..|-|||+|.+.++|..|..+.+++...+|-|.|.-+..+
T Consensus 318 N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 318 N-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred c-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 6 56888899999999999999999999988888888888766543
No 97
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=3.2e-13 Score=112.18 Aligned_cols=149 Identities=32% Similarity=0.488 Sum_probs=121.0
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
..++||||+|+...++|+.|.++|-+-|.|..|.|.++++ ++.+ ||||+|.++.+...|++.+|+..+.+..+++..-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4678999999999999999999999999999999988774 4455 9999999999999999999999999998888544
Q ss_pred CcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC
Q 017119 102 SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181 (377)
Q Consensus 102 ~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g 181 (377)
...... -|+..++++.+...|+..|.+ +.+++-.+++ |+.+.++|+.+-...+.-.+++...+..+.-
T Consensus 85 ~G~sha----------pld~r~~~ei~~~v~s~a~p~-~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 85 CGNSHA----------PLDERVTEEILYEVFSQAGPI-EGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred cCCCcc----------hhhhhcchhhheeeecccCCC-CCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 333211 166778889999999999987 6778877754 8888999999988877777887766655443
Q ss_pred eee
Q 017119 182 RQI 184 (377)
Q Consensus 182 ~~l 184 (377)
+.+
T Consensus 153 ~~~ 155 (267)
T KOG4454|consen 153 KKV 155 (267)
T ss_pred CCc
Confidence 333
No 98
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=2.5e-12 Score=121.94 Aligned_cols=169 Identities=29% Similarity=0.507 Sum_probs=139.7
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhc-----------C-CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHH
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQA-----------G-PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKV 85 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~-----------G-~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~ 85 (377)
+.-..+.+.++|++++..++++.+..+|..- | .+..+.+ +..++|||++|.+.++|..|+.
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~------n~~~nfa~ie~~s~~~at~~~~- 241 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL------NLEKNFAFIEFRSISEATEAMA- 241 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee------cccccceeEEecCCCchhhhhc-
Confidence 3445688899999999999999999999864 2 2556665 4456799999999999999988
Q ss_pred hcCcccCCceeEEeecCcC----------------------ccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecce
Q 017119 86 LNMIKLYGKPIRVNKASQD----------------------KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143 (377)
Q Consensus 86 l~~~~~~g~~i~v~~~~~~----------------------~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~ 143 (377)
++++.+.|..+++..-... .......+.+||++|+..+++.+++++++.||.+ ...+
T Consensus 242 ~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~l-k~f~ 320 (500)
T KOG0120|consen 242 LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPL-KAFR 320 (500)
T ss_pred ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccc-hhhe
Confidence 7777777777665332111 1122334579999999999999999999999998 6789
Q ss_pred eecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecCc
Q 017119 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDT 194 (377)
Q Consensus 144 i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~~ 194 (377)
++.|..+|.+|||||.+|.+......|+..|||..+.++.|.|..|.....
T Consensus 321 lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGAS 371 (500)
T ss_pred eecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccch
Confidence 999999999999999999999999999999999999999999999876654
No 99
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.33 E-value=8.4e-11 Score=105.18 Aligned_cols=156 Identities=21% Similarity=0.213 Sum_probs=126.8
Q ss_pred cccCCCCeEEEcCCCcC-CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 19 AERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~-~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
........++|.+|... ++-+.|-.+|..||.|+.|++++.+ .|.|.|++.|..+.++|+..||+..+.|..|.
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~ 356 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLN 356 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEE
Confidence 34456788999999865 5667899999999999999998865 36799999999999999999999999999999
Q ss_pred EeecCcCc------------------------------------cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeec
Q 017119 98 VNKASQDK------------------------------------KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN 141 (377)
Q Consensus 98 v~~~~~~~------------------------------------~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~ 141 (377)
|..++..- +....++.|..-|.+..+|||.|.++|...++....
T Consensus 357 v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~s 436 (494)
T KOG1456|consen 357 VCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTS 436 (494)
T ss_pred EeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcce
Confidence 87765431 011124578899999999999999999988877556
Q ss_pred ceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC
Q 017119 142 PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181 (377)
Q Consensus 142 ~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g 181 (377)
++|+.-+....+ -++++|++.++|.+||.+||...+++
T Consensus 437 vkvFp~kserSs--sGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 437 VKVFPLKSERSS--SGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred EEeecccccccc--cceeeeehHHHHHHHHHHhccccccC
Confidence 677765432222 47899999999999999999988865
No 100
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.32 E-value=7.3e-12 Score=113.96 Aligned_cols=80 Identities=40% Similarity=0.683 Sum_probs=75.9
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
.++|||+||++.+++++|+++|.+||.+ ..+.+..|+.++.++|||||+|.+.++|..|++.+++..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~-~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPV-KRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCce-eEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999998 677899998899999999999999999999999999999999999999976
Q ss_pred e
Q 017119 191 K 191 (377)
Q Consensus 191 ~ 191 (377)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 3
No 101
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.32 E-value=6.9e-12 Score=107.64 Aligned_cols=77 Identities=22% Similarity=0.386 Sum_probs=69.0
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
..+|||+||++.+|+++|+++|+.||.| ..++|++|. ..++||||+|.+.++|+.|+ .|+|..|.++.|.|..+.
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I-~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAI-EHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCe-EEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999998 678888884 45679999999999999999 599999999999998766
Q ss_pred ec
Q 017119 191 KK 192 (377)
Q Consensus 191 ~~ 192 (377)
..
T Consensus 80 ~y 81 (243)
T PLN03121 80 QY 81 (243)
T ss_pred cc
Confidence 43
No 102
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.30 E-value=5e-12 Score=92.62 Aligned_cols=79 Identities=28% Similarity=0.487 Sum_probs=69.4
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
++.|||.||++.+|.|++.++|.+||.| ..++|- .+...+|-|||.|++..+|.+|++.|.|..++++-+.|-|-.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~I-rQIRiG---~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTI-RQIRIG---NTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccce-EEEEec---CccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4579999999999999999999999998 455664 344568899999999999999999999999999999999876
Q ss_pred ecC
Q 017119 191 KKD 193 (377)
Q Consensus 191 ~~~ 193 (377)
..+
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 544
No 103
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=2.8e-11 Score=86.50 Aligned_cols=74 Identities=43% Similarity=0.802 Sum_probs=66.7
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
+|+|+||+.++++++|+++|+.+|.+ ..+.+..+..+ ..+++|||+|.+.++|..|++.+++..++|+.+.|+|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i-~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKV-ESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCE-EEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999998 56677776554 7789999999999999999999999999999999875
No 104
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.27 E-value=4.7e-12 Score=107.71 Aligned_cols=165 Identities=23% Similarity=0.355 Sum_probs=130.2
Q ss_pred CeEEEcCCCcCCCHHH-H--HHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 25 ATAYVGNLDPQVTEEL-L--WELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~-L--~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
...+++++-.++..+- | ...|+.+-.+...++++++ -+.-++++|+.|.....-.++-..-+++++....|++...
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~g 175 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAG 175 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeeccc
Confidence 3456666655555554 3 6777777767777777766 3567889999999998888888777777777776776443
Q ss_pred CcCc-----cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcC
Q 017119 102 SQDK-----KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176 (377)
Q Consensus 102 ~~~~-----~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~ 176 (377)
...+ +..+++.+||.|.|..+++++.|...|.+|-.- ...++++|+.||+++||+||.|.+..++..|++.+++
T Consensus 176 tswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf-~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~g 254 (290)
T KOG0226|consen 176 TSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSF-QKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNG 254 (290)
T ss_pred cccCCcccccCccccceeecccccccccHHHHHHHHHhccch-hhccccccccccccccceeeeecCHHHHHHHHHhhcc
Confidence 3222 223456789999999999999999999999775 5679999999999999999999999999999999999
Q ss_pred ceecCeeeEEeeeee
Q 017119 177 QYLCNRQITVSYAYK 191 (377)
Q Consensus 177 ~~~~g~~l~v~~a~~ 191 (377)
+.++.+.|+++-+.-
T Consensus 255 kyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 255 KYVGSRPIKLRKSEW 269 (290)
T ss_pred cccccchhHhhhhhH
Confidence 999999998875543
No 105
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.26 E-value=2.6e-11 Score=82.29 Aligned_cols=56 Identities=41% Similarity=0.683 Sum_probs=50.9
Q ss_pred HHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 41 LWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 41 L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
|+++|++||.|.++.+..+. +++|||+|.+.++|++|++.||+..+.|+.|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997654 589999999999999999999999999999999885
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=99.26 E-value=2.4e-11 Score=86.49 Aligned_cols=63 Identities=27% Similarity=0.412 Sum_probs=54.0
Q ss_pred HHHHHHHHh----hcCCeeecceeecCCCC--CCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 125 EKLLYDTFS----AFGVIVTNPKIMRDPDT--GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 125 ~~~l~~~f~----~~G~vv~~~~i~~d~~~--~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
+++|+++|+ .||.|.+..++..++.+ +.++||+||+|.+.++|.+|++.||++.++|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888887 99998543346777666 8999999999999999999999999999999999864
No 107
>smart00361 RRM_1 RNA recognition motif.
Probab=99.25 E-value=3.1e-11 Score=85.92 Aligned_cols=61 Identities=28% Similarity=0.327 Sum_probs=55.0
Q ss_pred HHHHHHHHH----hcCCeEEEE-EeccCCC--CCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 38 EELLWELFV----QAGPVVNVY-VPKDRVT--NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 38 e~~L~~~f~----~~G~i~~v~-i~~~~~~--~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
+++|+++|+ +||.|.+|. ++.+..+ +.++|||||+|.+.++|.+|++.|++..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678889998 999999995 6666656 889999999999999999999999999999999876
No 108
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.24 E-value=4e-11 Score=81.35 Aligned_cols=56 Identities=43% Similarity=0.786 Sum_probs=48.9
Q ss_pred HHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 128 LYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 128 l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
|+++|++||.| ..+.+.++. +++|||+|.+.++|++|++.||+..++|+.|+|+||
T Consensus 1 L~~~f~~fG~V-~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEV-KKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-E-EEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccE-EEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999998 566665542 689999999999999999999999999999999996
No 109
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.20 E-value=7.3e-11 Score=97.76 Aligned_cols=88 Identities=25% Similarity=0.384 Sum_probs=80.0
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhc-CCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQA-GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
...+......+||..++.-+.+.+|..+|.+| |.|..+++.+++.||+++|||||+|++.+.|+.|-+.||++.+.++.
T Consensus 42 ~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~l 121 (214)
T KOG4208|consen 42 EKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHL 121 (214)
T ss_pred cCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhe
Confidence 34455677789999999999999999999999 78888888899999999999999999999999999999999999999
Q ss_pred eEEeecCcC
Q 017119 96 IRVNKASQD 104 (377)
Q Consensus 96 i~v~~~~~~ 104 (377)
|.|++....
T Consensus 122 L~c~vmppe 130 (214)
T KOG4208|consen 122 LECHVMPPE 130 (214)
T ss_pred eeeEEeCch
Confidence 999887655
No 110
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=3.9e-11 Score=97.31 Aligned_cols=80 Identities=20% Similarity=0.370 Sum_probs=68.6
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||+-++.+.||.++|.+||.|+ +|.|- ..-..-.||||+|++..+|+.||..-++..++|..|+|+|+
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~-~ieLK---~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIR-EIELK---NRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceE-EEEec---cCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 457899999999999999999999999983 44442 12234679999999999999999999999999999999999
Q ss_pred eecC
Q 017119 190 YKKD 193 (377)
Q Consensus 190 ~~~~ 193 (377)
....
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 7664
No 111
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.16 E-value=4.6e-11 Score=107.92 Aligned_cols=170 Identities=18% Similarity=0.238 Sum_probs=139.5
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
....++|++++.+++.+.++..++.++|.+..+.+........+++++++.|...+.+..|+.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35789999999999999999999999999888888887778899999999999999999999855444444444433222
Q ss_pred CcCc---------cccCCCCeEE-EcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHH
Q 017119 102 SQDK---------KSLDVGANLF-IGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171 (377)
Q Consensus 102 ~~~~---------~~~~~~~~l~-V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~ 171 (377)
.... .......++| |+++++.+++++|+.+|..+|.| ..+++..+..++.++||+||.|.+..++..++
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i-~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEI-TSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcc-eeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 2111 1222234555 99999999999999999999998 57789999999999999999999999999999
Q ss_pred HHHcCceecCeeeEEeeeeecC
Q 017119 172 EAMNGQYLCNRQITVSYAYKKD 193 (377)
Q Consensus 172 ~~l~~~~~~g~~l~v~~a~~~~ 193 (377)
.. ....+.++.+.+.+.....
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hc-ccCcccCcccccccCCCCc
Confidence 88 8889999999999887654
No 112
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.15 E-value=1.4e-10 Score=96.07 Aligned_cols=84 Identities=24% Similarity=0.433 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
.....+||++++..+.+.+|..+|.+||..+..+++.|++.||.+||||||+|++.+.|.-|-+.||+..+.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 34457999999999999999999999977778888889999999999999999999999999999999999999999999
Q ss_pred eeec
Q 017119 189 AYKK 192 (377)
Q Consensus 189 a~~~ 192 (377)
-...
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 8766
No 113
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.14 E-value=5.4e-11 Score=103.13 Aligned_cols=74 Identities=28% Similarity=0.518 Sum_probs=67.7
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeee
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 191 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~ 191 (377)
.+||||||+..+++.+|+.+|++||+|+ +|.|++ .|+||..++++.|+.||..|++.+|+|..|+|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVl-ECDIvK--------NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVL-ECDIVK--------NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceE-eeeeec--------ccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 3699999999999999999999999995 667764 4999999999999999999999999999999999988
Q ss_pred cCc
Q 017119 192 KDT 194 (377)
Q Consensus 192 ~~~ 194 (377)
|.+
T Consensus 74 Ksk 76 (346)
T KOG0109|consen 74 KSK 76 (346)
T ss_pred cCC
Confidence 743
No 114
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=3.9e-11 Score=118.32 Aligned_cols=169 Identities=22% Similarity=0.248 Sum_probs=138.6
Q ss_pred CCCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 14 ~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
......+...++|||++||...+++.+|+..|.++|.|.+|.|..-. .+....||||.|.+.+.+-.|...+.+..|..
T Consensus 362 ~v~~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~ 440 (975)
T KOG0112|consen 362 HVLKLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGN 440 (975)
T ss_pred ccccccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCcccc
Confidence 34456677789999999999999999999999999999999986543 24455699999999999999998898888877
Q ss_pred ceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 017119 94 KPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173 (377)
Q Consensus 94 ~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~ 173 (377)
..+++.+... .......+|+++|..|+....|...|..||.| ..|.+ ....-|++|.|++...++.|+..
T Consensus 441 g~~r~glG~~---kst~ttr~~sgglg~w~p~~~l~r~fd~fGpi-r~Idy------~hgq~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 441 GTHRIGLGQP---KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPI-RIIDY------RHGQPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred Cccccccccc---ccccceeeccCCCCCCChHHHHHHHhhccCcc-eeeec------ccCCcceeeecccCccchhhHHH
Confidence 6666666543 33345689999999999999999999999998 43332 22345899999999999999999
Q ss_pred HcCceecC--eeeEEeeeeecC
Q 017119 174 MNGQYLCN--RQITVSYAYKKD 193 (377)
Q Consensus 174 l~~~~~~g--~~l~v~~a~~~~ 193 (377)
+.+..|.+ +.+.|.|+..-.
T Consensus 511 ~rgap~G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPPG 532 (975)
T ss_pred HhcCcCCCCCcccccccccCCC
Confidence 99999975 778888886543
No 115
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.12 E-value=2.3e-10 Score=107.42 Aligned_cols=82 Identities=27% Similarity=0.353 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
.-.++|||.+|+..+...+|+.+|++||+|...+++.+..+--.++|+||++.+.++|.+||+.|+.+.++|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 45679999999999999999999999999999999999888888999999999999999999999999999999999876
Q ss_pred Cc
Q 017119 102 SQ 103 (377)
Q Consensus 102 ~~ 103 (377)
+.
T Consensus 483 KN 484 (940)
T KOG4661|consen 483 KN 484 (940)
T ss_pred cc
Confidence 53
No 116
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=8.2e-11 Score=100.74 Aligned_cols=90 Identities=24% Similarity=0.376 Sum_probs=82.0
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
..+.+--+.++|||..|+.+..+.||.+.|-.||.|.+.+++.|+.++.+|+|+||.|.+..+|+.||..+|+..|+-++
T Consensus 277 qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKR 356 (371)
T KOG0146|consen 277 QQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 356 (371)
T ss_pred hhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhh
Confidence 34555668899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeecCcCc
Q 017119 96 IRVNKASQDK 105 (377)
Q Consensus 96 i~v~~~~~~~ 105 (377)
|+|.....+.
T Consensus 357 LKVQLKRPkd 366 (371)
T KOG0146|consen 357 LKVQLKRPKD 366 (371)
T ss_pred hhhhhcCccc
Confidence 9987655443
No 117
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=9.5e-11 Score=104.14 Aligned_cols=81 Identities=28% Similarity=0.480 Sum_probs=76.4
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
.+.|||.-|..-++++||.-+|+.||.| ..|.|++|++||.+..||||+|++.+++++|.-+|++..|++++|.|.|+.
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i-~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQ 317 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKI-VSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQ 317 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccc-eeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhh
Confidence 4679999999999999999999999999 578999999999999999999999999999999999999999999999986
Q ss_pred ec
Q 017119 191 KK 192 (377)
Q Consensus 191 ~~ 192 (377)
.-
T Consensus 318 SV 319 (479)
T KOG0415|consen 318 SV 319 (479)
T ss_pred hh
Confidence 43
No 118
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.1e-10 Score=103.62 Aligned_cols=83 Identities=25% Similarity=0.373 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
-..+.|||-.|..-++++||.-+|+.||.|.+|.+++|..++.+..||||+|.+.+++++|.-.|.+..|+++.|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CcC
Q 017119 102 SQD 104 (377)
Q Consensus 102 ~~~ 104 (377)
..-
T Consensus 317 QSV 319 (479)
T KOG0415|consen 317 QSV 319 (479)
T ss_pred hhh
Confidence 544
No 119
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.09 E-value=1.1e-09 Score=101.84 Aligned_cols=159 Identities=22% Similarity=0.270 Sum_probs=115.0
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEE-EEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVN-VYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
..+..|.+++||+.||++||.+||+-.-.|.. |.+..+. .++..|-|||+|++.+.|++|+. .+...|..|.|.|..
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFR 178 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeeh
Confidence 47789999999999999999999998765555 3344444 57789999999999999999998 455556666666533
Q ss_pred cCcCc-------------------------c-------------------------------------------------
Q 017119 101 ASQDK-------------------------K------------------------------------------------- 106 (377)
Q Consensus 101 ~~~~~-------------------------~------------------------------------------------- 106 (377)
+...+ .
T Consensus 179 Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~ 258 (510)
T KOG4211|consen 179 SSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPN 258 (510)
T ss_pred hHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccc
Confidence 21100 0
Q ss_pred ---c---------------cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHH
Q 017119 107 ---S---------------LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 168 (377)
Q Consensus 107 ---~---------------~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~ 168 (377)
+ ......++.++|++..++.+|.++|+-.-.+ .+.|... .+|+..|-|+|+|.+.++|.
T Consensus 259 ~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~--~v~i~ig-~dGr~TGEAdveF~t~edav 335 (510)
T KOG4211|consen 259 YPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY--RVHIEIG-PDGRATGEADVEFATGEDAV 335 (510)
T ss_pred cCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce--eEEEEeC-CCCccCCcceeecccchhhH
Confidence 0 0001357889999999999999999876554 2333333 67888999999999999999
Q ss_pred HHHHHHcCceecCeeeEE
Q 017119 169 AAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 169 ~a~~~l~~~~~~g~~l~v 186 (377)
.|+.+ ++..+..+-|.+
T Consensus 336 ~Amsk-d~anm~hrYVEl 352 (510)
T KOG4211|consen 336 GAMGK-DGANMGHRYVEL 352 (510)
T ss_pred hhhcc-CCcccCcceeee
Confidence 99974 444444444443
No 120
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.08 E-value=3.5e-10 Score=95.37 Aligned_cols=83 Identities=27% Similarity=0.453 Sum_probs=72.3
Q ss_pred CCeEEEcCCCCcCCHHHHHH----HHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 111 GANLFIGNLDPDVDEKLLYD----TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~----~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
+.||||.||.+.+..++|+. +|++||.|+ +|... .+.+.||-|||.|.+.+.|-.|+..|+|..+.|+.++|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~il-dI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKIL-DISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeE-EEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 34999999999999999887 999999985 33333 57789999999999999999999999999999999999
Q ss_pred eeeeecCcCCc
Q 017119 187 SYAYKKDTKGE 197 (377)
Q Consensus 187 ~~a~~~~~~~~ 197 (377)
.||+.+.....
T Consensus 85 qyA~s~sdii~ 95 (221)
T KOG4206|consen 85 QYAKSDSDIIA 95 (221)
T ss_pred ecccCccchhh
Confidence 99998765433
No 121
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.04 E-value=2.3e-10 Score=103.72 Aligned_cols=153 Identities=24% Similarity=0.297 Sum_probs=108.0
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
..++|||++|+.++++++|+++|++||.|..+.++.|..+...+||+||+|.+++++++++. ..-+.|.++.+.|..+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 35699999999999999999999999999999999999999999999999999999999987 77889999999999987
Q ss_pred cCccccCCC----CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCC--CC--CCcceEEEEeCCHHHHHHHHHHH
Q 017119 103 QDKKSLDVG----ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD--TG--NSRGFGFISYDSFEASDAAIEAM 174 (377)
Q Consensus 103 ~~~~~~~~~----~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~--~~--~~kg~afV~f~~~~~A~~a~~~l 174 (377)
.+....... ...+..++....+.-.|..+|..|+.+.....-.+... .+ ...+++|..|.+......+...+
T Consensus 175 pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 254 (311)
T KOG4205|consen 175 PKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGPLFNGGSGYPEFGNSGLGFGYGNKL 254 (311)
T ss_pred chhhccccccccccccccccccccccccccchhccccCccccccccccccccccccccCCCccccccCcccccccccccc
Confidence 765433221 12222244444445567777777776521101101100 01 24566777777665555444444
Q ss_pred cC
Q 017119 175 NG 176 (377)
Q Consensus 175 ~~ 176 (377)
++
T Consensus 255 ~~ 256 (311)
T KOG4205|consen 255 NR 256 (311)
T ss_pred CC
Confidence 33
No 122
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=9.6e-10 Score=97.83 Aligned_cols=83 Identities=23% Similarity=0.395 Sum_probs=72.9
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHH-hcCcccCCc
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKV-LNMIKLYGK 94 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~-l~~~~~~g~ 94 (377)
.+.-+.....+|||++|-..++|.+|+++|.+||+|+.+.+.. .+++|||+|.+.++|++|.+. ++.+.|+|+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP------RKGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec------ccccceeeehhhHHHHHHHHhhcceeeecce
Confidence 5566677889999999999999999999999999999999855 346999999999999998865 566789999
Q ss_pred eeEEeecCcC
Q 017119 95 PIRVNKASQD 104 (377)
Q Consensus 95 ~i~v~~~~~~ 104 (377)
+|.|.|....
T Consensus 294 Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 294 RLKIKWGRPK 303 (377)
T ss_pred EEEEEeCCCc
Confidence 9999998873
No 123
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.01 E-value=9e-10 Score=103.58 Aligned_cols=82 Identities=24% Similarity=0.462 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||.+|...+...||+.+|++||.|| ..+|+.+..+-..++|+||++.+.++|.+||+.|+...|.|+.|.|+.+
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVv-GAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVV-GAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhccee-ceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 356899999999999999999999999996 5688877777788999999999999999999999999999999999998
Q ss_pred eec
Q 017119 190 YKK 192 (377)
Q Consensus 190 ~~~ 192 (377)
++.
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 765
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=3.7e-11 Score=117.99 Aligned_cols=151 Identities=19% Similarity=0.228 Sum_probs=126.7
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
+...++||+||+..+.+.+|...|..+|.+..+.+......+..||+||++|...+++.+|+....+..+ |
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g-------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G-------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h--------
Confidence 4556899999999999999999999999888887765555688999999999999999999995544433 2
Q ss_pred CcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC
Q 017119 102 SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181 (377)
Q Consensus 102 ~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g 181 (377)
+..|+|.|.++..|.++++.++..+|.+ .+.+++.. ..|+.+|.++|.|.++.++.+++...+...+..
T Consensus 736 ---------K~~v~i~g~pf~gt~e~~k~l~~~~gn~-~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 736 ---------KISVAISGPPFQGTKEELKSLASKTGNV-TSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred ---------hhhhheeCCCCCCchHHHHhhccccCCc-cccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhh
Confidence 2369999999999999999999999998 45555555 568999999999999999999999888888877
Q ss_pred eeeEEeeeeec
Q 017119 182 RQITVSYAYKK 192 (377)
Q Consensus 182 ~~l~v~~a~~~ 192 (377)
+.+.|..+...
T Consensus 805 ~~~~v~vsnp~ 815 (881)
T KOG0128|consen 805 NNGEVQVSNPE 815 (881)
T ss_pred cCccccccCCc
Confidence 77777775543
No 125
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=1.8e-09 Score=96.15 Aligned_cols=78 Identities=23% Similarity=0.407 Sum_probs=66.6
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHH-cCceecCeeeE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAM-NGQYLCNRQIT 185 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l-~~~~~~g~~l~ 185 (377)
+.....+|||++|...++|.+|+++|.+||+| +.+.++. .+++|||+|.+.++|++|.+++ +...|+|++|+
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGei-rsi~~~~------~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~ 296 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEI-RSIRILP------RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLK 296 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCe-eeEEeec------ccccceeeehhhHHHHHHHHhhcceeeecceEEE
Confidence 34445689999999999999999999999998 5555543 3569999999999999999874 66678999999
Q ss_pred Eeeeee
Q 017119 186 VSYAYK 191 (377)
Q Consensus 186 v~~a~~ 191 (377)
|.|+..
T Consensus 297 i~Wg~~ 302 (377)
T KOG0153|consen 297 IKWGRP 302 (377)
T ss_pred EEeCCC
Confidence 999988
No 126
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.90 E-value=1.8e-08 Score=90.74 Aligned_cols=162 Identities=16% Similarity=0.128 Sum_probs=113.2
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
+.+..|..++|++..++.+|..+|+-.......+.+.....+...|.+.|+|.|.|.-+.|++ .++..+.++.|.|-.+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 456677889999999999999999865333222222222346667899999999999999988 6667788888888666
Q ss_pred CcCcc---------------ccCCCCeEEEcCCCCcCCHHHHHHHHhh---cCCeeecceeecCCCCCCCcceEEEEeCC
Q 017119 102 SQDKK---------------SLDVGANLFIGNLDPDVDEKLLYDTFSA---FGVIVTNPKIMRDPDTGNSRGFGFISYDS 163 (377)
Q Consensus 102 ~~~~~---------------~~~~~~~l~V~nl~~~~~~~~l~~~f~~---~G~vv~~~~i~~d~~~~~~kg~afV~f~~ 163 (377)
...+- ...+.-.|-+++|+++.++.|+.++|.. .+..++.+.++ .+-+|+..|-|||.|..
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV-~rpdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFV-TRPDGRPTGDAFVLFAC 215 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEE-ECCCCCcccceEEEecC
Confidence 54421 0111224667899999999999999963 22222344444 33578899999999999
Q ss_pred HHHHHHHHHHHcCceecCeeeEE
Q 017119 164 FEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 164 ~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
+++|+.|+.+ ++..+..|-|.+
T Consensus 216 ee~aq~aL~k-hrq~iGqRYIEl 237 (508)
T KOG1365|consen 216 EEDAQFALRK-HRQNIGQRYIEL 237 (508)
T ss_pred HHHHHHHHHH-HHHHHhHHHHHH
Confidence 9999999985 333333333333
No 127
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=2.4e-09 Score=101.04 Aligned_cols=160 Identities=23% Similarity=0.231 Sum_probs=107.2
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
++.....++|+|.||+..+++++|+++|+.||+|++|+. +-..++..||+|.|..+|+.|++.|+..++.|++|+
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 344567889999999999999999999999999999766 455678999999999999999999999999999988
Q ss_pred EeecCcCccccCC---------------------CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcce
Q 017119 98 VNKASQDKKSLDV---------------------GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGF 156 (377)
Q Consensus 98 v~~~~~~~~~~~~---------------------~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~ 156 (377)
............. ...+++ .|....+..-+...+.-+|.+. . ++++..+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~----~---~~~~~~~hq 215 (549)
T KOG4660|consen 144 RPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSP----G---RETPLLNHQ 215 (549)
T ss_pred CCCcccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCccc----c---ccccchhhh
Confidence 4332222111111 112222 2555555544444455555441 1 122333334
Q ss_pred EEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeee
Q 017119 157 GFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 191 (377)
Q Consensus 157 afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~ 191 (377)
-|++|.+..++..+.... |..+.+....++++..
T Consensus 216 ~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 216 RFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 578888888875555522 5555666666666655
No 128
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.87 E-value=2.4e-09 Score=91.41 Aligned_cols=86 Identities=26% Similarity=0.413 Sum_probs=79.3
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
..+.+.+||+|.|..+++++.|...|.+|-.....++++|..+++++||+||.|.+.+++..|++.+++..++.+.|++.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 34577899999999999999999999999988999999999999999999999999999999999999999999999987
Q ss_pred ecCcCc
Q 017119 100 KASQDK 105 (377)
Q Consensus 100 ~~~~~~ 105 (377)
.+..+.
T Consensus 266 kS~wke 271 (290)
T KOG0226|consen 266 KSEWKE 271 (290)
T ss_pred hhhHHh
Confidence 765554
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.85 E-value=3.3e-09 Score=102.00 Aligned_cols=170 Identities=14% Similarity=0.057 Sum_probs=129.7
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
.+++.+-+.+..++.++.|+++||... .|..+.|..+.......|.++|+|....++++|++ -+...+-+|.+.+.-.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCC
Confidence 456677788899999999999998654 35666666666566668999999999999999988 4555556677766433
Q ss_pred CcCcc--------------------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecce
Q 017119 102 SQDKK--------------------------------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143 (377)
Q Consensus 102 ~~~~~--------------------------------------~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~ 143 (377)
.+... -.....+|||..|+..+++.++.+.|.....|+..|.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 22110 0112357999999999999999999998777754455
Q ss_pred eecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecCc
Q 017119 144 IMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDT 194 (377)
Q Consensus 144 i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~~ 194 (377)
|.+- -+++.++.|||+|.+++++.+|...-.+..+..+.|+|+-..++..
T Consensus 467 lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~m 516 (944)
T KOG4307|consen 467 LTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYAM 516 (944)
T ss_pred eccC-CcccccchhhheeccccccchhhhcccccccCceEEEeechhhHHH
Confidence 5544 5678889999999999999999988778888888999987766544
No 130
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.80 E-value=1.2e-06 Score=78.29 Aligned_cols=81 Identities=19% Similarity=0.321 Sum_probs=70.9
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcC--CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAG--PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
...+-...++|||||-|++|++||.+.+...| .+.+++++.++.+|.+||||+|...+..+.++.++.|-..+|+|..
T Consensus 74 ~s~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 74 TSSEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred ccccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 33455677999999999999999999998887 4788999999999999999999999999999999999888888776
Q ss_pred eEE
Q 017119 96 IRV 98 (377)
Q Consensus 96 i~v 98 (377)
-.|
T Consensus 154 P~V 156 (498)
T KOG4849|consen 154 PTV 156 (498)
T ss_pred Cee
Confidence 554
No 131
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.78 E-value=3e-08 Score=86.53 Aligned_cols=85 Identities=29% Similarity=0.390 Sum_probs=77.1
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
.+....+|+|.||++.++++||+++|++||.++.+.+..++ .+.+.|.|-|.|...++|++|++.++++.++|+.++++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 44556899999999999999999999999999999998887 68899999999999999999999999999999999988
Q ss_pred ecCcCc
Q 017119 100 KASQDK 105 (377)
Q Consensus 100 ~~~~~~ 105 (377)
......
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 776554
No 132
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.75 E-value=5.8e-08 Score=81.47 Aligned_cols=88 Identities=18% Similarity=0.270 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceec---CeeeEE
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC---NRQITV 186 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~---g~~l~v 186 (377)
..+||||.+|+.++.-.+|+.+|..|-.......-+.++.....+-+|||.|.+.++|..|+..|||..|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 35799999999999999999999998766333233334444456789999999999999999999999996 688999
Q ss_pred eeeeecCcCCc
Q 017119 187 SYAYKKDTKGE 197 (377)
Q Consensus 187 ~~a~~~~~~~~ 197 (377)
++++...+..+
T Consensus 113 ElAKSNtK~kr 123 (284)
T KOG1457|consen 113 ELAKSNTKRKR 123 (284)
T ss_pred eehhcCccccc
Confidence 99986654433
No 133
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.74 E-value=3.5e-08 Score=95.14 Aligned_cols=75 Identities=23% Similarity=0.313 Sum_probs=66.6
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
.|-+.|++++++-+||.++|..|-.+-.+|++.++ +.|...|-|.|.|++.++|.+|...|+++.|..+.|++..
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 47789999999999999999999887555555554 7799999999999999999999999999999999998864
No 134
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.69 E-value=5.7e-09 Score=95.04 Aligned_cols=156 Identities=26% Similarity=0.377 Sum_probs=122.2
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCc-ccCCceeEEeecCc
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMI-KLYGKPIRVNKASQ 103 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~-~~~g~~i~v~~~~~ 103 (377)
+.+|++||....+..||+++|...-.-.+-.+ -...||+||.+.+...|.+|++.+++. ++.|+.+.+..+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f------l~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF------LVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce------eeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 46899999999999999999986521111111 123479999999999999999999874 68899999988877
Q ss_pred CccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCee
Q 017119 104 DKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ 183 (377)
Q Consensus 104 ~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~ 183 (377)
++... +.+-|.|++....++.|..++.+||.+.....+..|.++ -..-|+|.+.+.++.||.+|++..+....
T Consensus 76 kkqrs---rk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~ 148 (584)
T KOG2193|consen 76 KKQRS---RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQH 148 (584)
T ss_pred HHHHh---hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhh
Confidence 65433 468999999999999999999999998333233333332 22347899999999999999999999999
Q ss_pred eEEeeeeecC
Q 017119 184 ITVSYAYKKD 193 (377)
Q Consensus 184 l~v~~a~~~~ 193 (377)
+++.|.-...
T Consensus 149 ~k~~YiPdeq 158 (584)
T KOG2193|consen 149 LKVGYIPDEQ 158 (584)
T ss_pred hhcccCchhh
Confidence 9999986554
No 135
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.67 E-value=6e-08 Score=86.52 Aligned_cols=81 Identities=21% Similarity=0.365 Sum_probs=73.9
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeec-------ceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTN-------PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ 183 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~-------~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~ 183 (377)
+..|||.||+.++|.+++.++|+++|.|... |+|.++. .|..||-|++.|..+++...|++.|++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 4569999999999999999999999998655 7888885 4999999999999999999999999999999999
Q ss_pred eEEeeeeec
Q 017119 184 ITVSYAYKK 192 (377)
Q Consensus 184 l~v~~a~~~ 192 (377)
|+|+.|+-.
T Consensus 213 ~rVerAkfq 221 (382)
T KOG1548|consen 213 LRVERAKFQ 221 (382)
T ss_pred EEEehhhhh
Confidence 999988644
No 136
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.63 E-value=1.1e-07 Score=82.91 Aligned_cols=82 Identities=21% Similarity=0.319 Sum_probs=71.6
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
..+|+|.||++.++++||+++|++||.+ +.+.+-.| ..|.+.|.|-|.|...++|..|++.+++..++|+.|+++...
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~-~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGEL-KRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccc-eEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3679999999999999999999999965 55555555 679999999999999999999999999999999999988876
Q ss_pred ecCc
Q 017119 191 KKDT 194 (377)
Q Consensus 191 ~~~~ 194 (377)
....
T Consensus 161 ~~~~ 164 (243)
T KOG0533|consen 161 SPSQ 164 (243)
T ss_pred Cccc
Confidence 5543
No 137
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.63 E-value=7.1e-08 Score=90.92 Aligned_cols=87 Identities=24% Similarity=0.380 Sum_probs=71.0
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
...+......+|||+||+.++++.+|+++|..||.|+...|......+...+||||+|.+.++++.|++ .+.+.++++.
T Consensus 280 ~~~~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~k 358 (419)
T KOG0116|consen 280 NNQEPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRK 358 (419)
T ss_pred CCcceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCee
Confidence 344455566679999999999999999999999999998887654334444899999999999999999 4478889999
Q ss_pred eEEeecCc
Q 017119 96 IRVNKASQ 103 (377)
Q Consensus 96 i~v~~~~~ 103 (377)
+.|+.-..
T Consensus 359 l~Veek~~ 366 (419)
T KOG0116|consen 359 LNVEEKRP 366 (419)
T ss_pred EEEEeccc
Confidence 99865443
No 138
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.62 E-value=3.4e-07 Score=68.42 Aligned_cols=69 Identities=28% Similarity=0.357 Sum_probs=60.6
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhc--CCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQA--GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY 92 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~ 92 (377)
.+||.|+|||...|.++|.+++.+. |...-+.+..|..++.+.|||||.|.+.++|.+..+.+++..+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 3699999999999999999999864 55666777778888899999999999999999999999988765
No 139
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.62 E-value=4.6e-08 Score=85.62 Aligned_cols=86 Identities=29% Similarity=0.390 Sum_probs=79.1
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
.........|||+|+...+|.+++...|+.||.|..+.+..|+.++..+||+||+|.+.+.+++++. |++..+.++.|.
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 3556688899999999999999999999999999999999999888899999999999999999999 999999999999
Q ss_pred EeecCcC
Q 017119 98 VNKASQD 104 (377)
Q Consensus 98 v~~~~~~ 104 (377)
|.+....
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9776544
No 140
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.57 E-value=3.7e-07 Score=68.25 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=69.4
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCe-eecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceec----CeeeEE
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVI-VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC----NRQITV 186 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~v-v~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~----g~~l~v 186 (377)
.||-|+||+...+.++|.+++.....- ...+.+..|..++.+.|||||.|.+.+.|.+..+.++|+.+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999998754221 355678888899999999999999999999999999999885 467789
Q ss_pred eeeeecC
Q 017119 187 SYAYKKD 193 (377)
Q Consensus 187 ~~a~~~~ 193 (377)
.||+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9987554
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.56 E-value=9.3e-08 Score=83.70 Aligned_cols=83 Identities=20% Similarity=0.366 Sum_probs=75.3
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
......+||+|+++.++.+++..+|+.||.+ ..+.+..|+.++..|||+||+|.+.+.+++++. |++..|.|+.+.|.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i-~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGI-NRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCc-cceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 3445689999999999999999999999998 667888898888999999999999999999999 99999999999999
Q ss_pred eeeec
Q 017119 188 YAYKK 192 (377)
Q Consensus 188 ~a~~~ 192 (377)
+.+-.
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87654
No 142
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=7.1e-08 Score=80.74 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=67.6
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
.++|||+|+...++||-|.++|-+.|.|+ .+.|..+ ..+..| ||||.|.++.+...|++.+||..+.++.+++++-.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~-kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVY-KVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceE-EEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 46899999999999999999999999985 4455554 445566 99999999999999999999999999999888754
Q ss_pred ec
Q 017119 191 KK 192 (377)
Q Consensus 191 ~~ 192 (377)
..
T Consensus 86 G~ 87 (267)
T KOG4454|consen 86 GN 87 (267)
T ss_pred CC
Confidence 43
No 143
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.46 E-value=5.9e-07 Score=87.15 Aligned_cols=83 Identities=30% Similarity=0.464 Sum_probs=74.4
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCC---CCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRV---TNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
.-..++|||+||+..++|+.|...|..||.|..++|+.-+. ....+.|+||.|.+..+|++|++.|+++.+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 44677999999999999999999999999999999987553 345678999999999999999999999999999999
Q ss_pred EeecCc
Q 017119 98 VNKASQ 103 (377)
Q Consensus 98 v~~~~~ 103 (377)
+.|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999854
No 144
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.45 E-value=1.9e-07 Score=88.44 Aligned_cols=72 Identities=25% Similarity=0.414 Sum_probs=63.7
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeE
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 185 (377)
.....+|+|-||+..+++++|+.+|+.||+| ++++ .+-..+|.+||+|.|..+|+.|++.|+++++.|++|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGei-r~ir-----~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEI-REIR-----ETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcch-hhhh-----cccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4456789999999999999999999999998 4433 4455788999999999999999999999999999988
No 145
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.45 E-value=1.1e-07 Score=86.02 Aligned_cols=151 Identities=13% Similarity=0.123 Sum_probs=113.0
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCC---CCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVT---NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
....|-|.||...+|.+++..+|.-.|+|.++.++-+..+ ......|||.|.|...+..|.. |.++.+-++.|.|.
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 3448999999999999999999999999999999764322 3445689999999999888866 77777777777764
Q ss_pred ecCcCc-------------------------------------------------------cccCCCCeEEEcCCCCcCC
Q 017119 100 KASQDK-------------------------------------------------------KSLDVGANLFIGNLDPDVD 124 (377)
Q Consensus 100 ~~~~~~-------------------------------------------------------~~~~~~~~l~V~nl~~~~~ 124 (377)
...... .......+++|++|...+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 321110 0001124799999999999
Q ss_pred HHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceec
Q 017119 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180 (377)
Q Consensus 125 ~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~ 180 (377)
..++.+.|+.+|+| ....+ ..+...-+|.|+|....+...|++. +|..+.
T Consensus 165 l~e~~e~f~r~Gev-~ya~~----ask~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 165 LPESGESFERKGEV-SYAHT----ASKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred chhhhhhhhhcchh-hhhhh----hccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 99999999999998 33333 3345566888999988888888874 555544
No 146
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.40 E-value=2.7e-07 Score=78.77 Aligned_cols=72 Identities=26% Similarity=0.583 Sum_probs=63.9
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeee
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 191 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~ 191 (377)
..+||++|++.+.+.+|.++|..||.+ .++.+ ..||+||+|.+..+|..|+..|++.+|.+..+.|+|+..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~-~d~~m--------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKI-PDADM--------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccc-cccee--------ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 369999999999999999999999998 34333 257899999999999999999999999999999999985
Q ss_pred c
Q 017119 192 K 192 (377)
Q Consensus 192 ~ 192 (377)
.
T Consensus 73 ~ 73 (216)
T KOG0106|consen 73 K 73 (216)
T ss_pred c
Confidence 4
No 147
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.36 E-value=2.7e-06 Score=60.51 Aligned_cols=71 Identities=24% Similarity=0.360 Sum_probs=48.2
Q ss_pred CeEEEcCCCcCCCHHHH----HHHHHhcC-CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 25 ATAYVGNLDPQVTEELL----WELFVQAG-PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L----~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
..|+|.|||.+.+...| +++++.|| .|.+| +.+.|+|.|.+.+.|++|.+.|++..+.|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46999999999988776 55556775 46555 23679999999999999999999999999999999
Q ss_pred ecCcCc
Q 017119 100 KASQDK 105 (377)
Q Consensus 100 ~~~~~~ 105 (377)
+....+
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 986554
No 148
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.35 E-value=1e-06 Score=83.26 Aligned_cols=79 Identities=29% Similarity=0.455 Sum_probs=64.2
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
..+|||+||+.++++++|+++|..||.|. ...|......++..+||||+|.+.++++.||++- ...+++++|.|+--+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik-~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIK-EGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhccccc-ccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecc
Confidence 34699999999999999999999999994 4444443333444599999999999999999864 778899999998554
Q ss_pred e
Q 017119 191 K 191 (377)
Q Consensus 191 ~ 191 (377)
.
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 4
No 149
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.19 E-value=1.9e-07 Score=92.37 Aligned_cols=164 Identities=20% Similarity=0.202 Sum_probs=123.8
Q ss_pred CCCCeEEEcCCCcCCCHH-HHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 22 NQDATAYVGNLDPQVTEE-LLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~-~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
...+...+.++.....+. ..+..|..+|.|+.|++-..+.......++++++....+++.|.. ..+..+.++.+.+..
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~~ 647 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVGL 647 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCCC
Confidence 455667788887666555 578889999999999987744444444488899999999988877 566667777777766
Q ss_pred cCcCcccc---------CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHH
Q 017119 101 ASQDKKSL---------DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171 (377)
Q Consensus 101 ~~~~~~~~---------~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~ 171 (377)
++...... ....++||.||...+.++||...|..+|.+ ..+++.....+++.||+||++|.+.+++.+|+
T Consensus 648 ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~-e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 648 ADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTI-EVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAV 726 (881)
T ss_pred CCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchh-hhHHHHHHhhccccccceeeEeecCCchhhhh
Confidence 65544222 122469999999999999999999999987 55566666678899999999999999999999
Q ss_pred HHHcCceecCeeeEEe
Q 017119 172 EAMNGQYLCNRQITVS 187 (377)
Q Consensus 172 ~~l~~~~~~g~~l~v~ 187 (377)
...+.+.+....+.|+
T Consensus 727 ~f~d~~~~gK~~v~i~ 742 (881)
T KOG0128|consen 727 AFRDSCFFGKISVAIS 742 (881)
T ss_pred hhhhhhhhhhhhhhee
Confidence 8776665554444333
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.18 E-value=9.1e-06 Score=57.88 Aligned_cols=72 Identities=24% Similarity=0.354 Sum_probs=47.8
Q ss_pred CeEEEcCCCCcCCHHH----HHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 112 ANLFIGNLDPDVDEKL----LYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~----l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
..|||.||+.+.+-.. |++++..+|.-|.. | +.+.|+|.|.+.+.|++|.+.|++..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~--v--------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLS--V--------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEE--E--------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 3699999999877654 56777788765332 2 24679999999999999999999999999999999
Q ss_pred eeeecC
Q 017119 188 YAYKKD 193 (377)
Q Consensus 188 ~a~~~~ 193 (377)
|.....
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 996554
No 151
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.18 E-value=2.5e-06 Score=76.97 Aligned_cols=86 Identities=31% Similarity=0.402 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeee-------cceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVT-------NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~-------~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g 181 (377)
....+|||.+|+..+++++|.++|.++|.|.. .|.|.+|++|+..|+-|.|.|+|-..|+.|++.++++.+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 33468999999999999999999999998822 36788999999999999999999999999999999999999
Q ss_pred eeeEEeeeeecCc
Q 017119 182 RQITVSYAYKKDT 194 (377)
Q Consensus 182 ~~l~v~~a~~~~~ 194 (377)
..|+|.+|..+..
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 9999999987764
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.16 E-value=2.9e-06 Score=75.49 Aligned_cols=113 Identities=17% Similarity=0.242 Sum_probs=81.6
Q ss_pred ccCCCCeEEEcCCCcCCCHHHH------HHHHHhcCCeEEEEEeccCCCCCc-cceE--EEEeCCHHHHHHHHHHhcCcc
Q 017119 20 ERNQDATAYVGNLDPQVTEELL------WELFVQAGPVVNVYVPKDRVTNLH-QGYG--FVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L------~~~f~~~G~i~~v~i~~~~~~~~~-~g~a--fV~f~~~e~A~~A~~~l~~~~ 90 (377)
...+.+-|||-+|+..+..+++ .++|.+||.|..|.+.+......+ .+.+ ||+|.+.|+|.+||...++..
T Consensus 110 RVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 110 RVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred eeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 3346778999999988887773 678999999999988665522222 2223 999999999999999999999
Q ss_pred cCCceeEEeecCcCc-------cccCCCCeEEEcCCC---CcCCHHHHHHHH
Q 017119 91 LYGKPIRVNKASQDK-------KSLDVGANLFIGNLD---PDVDEKLLYDTF 132 (377)
Q Consensus 91 ~~g~~i~v~~~~~~~-------~~~~~~~~l~V~nl~---~~~~~~~l~~~f 132 (377)
++||.|+..+...+- ..-.+..++|+..-- +..+.+||...-
T Consensus 190 ~DGr~lkatYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~q 241 (480)
T COG5175 190 LDGRVLKATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNSQ 241 (480)
T ss_pred ccCceEeeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhhh
Confidence 999999998876542 112234567765432 345666665443
No 153
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.15 E-value=3.8e-06 Score=81.73 Aligned_cols=81 Identities=27% Similarity=0.558 Sum_probs=70.5
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCC---CCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD---TGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~---~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
..+|||+||+..++++.|...|..||.| ..++|+.-+. ....+.|+||.|-+..+|++|++.|++..+.+..+++-
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPl-asvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPL-ASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcc-cceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 4579999999999999999999999998 4667765442 34567799999999999999999999999999999999
Q ss_pred eeeec
Q 017119 188 YAYKK 192 (377)
Q Consensus 188 ~a~~~ 192 (377)
|++.-
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 98543
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.07 E-value=4.5e-06 Score=75.40 Aligned_cols=85 Identities=21% Similarity=0.291 Sum_probs=76.4
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEE--------EEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVN--------VYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY 92 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~ 92 (377)
...+.+|||.+|+..+++++|.++|.+||.|.. |+|.++++|+..|+-|.|+|.+...|+.|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 567789999999999999999999999997754 777888899999999999999999999999999999999
Q ss_pred CceeEEeecCcCc
Q 017119 93 GKPIRVNKASQDK 105 (377)
Q Consensus 93 g~~i~v~~~~~~~ 105 (377)
+..|+|..+....
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999887776554
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.93 E-value=2.9e-05 Score=59.45 Aligned_cols=59 Identities=25% Similarity=0.324 Sum_probs=38.9
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCc
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMI 89 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~ 89 (377)
..|+|.++...++.++|++.|++||.|..|.+... ...|||.|.+.++|++|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhc
Confidence 46889999999999999999999999998888543 247999999999999999977543
No 156
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=1.6e-05 Score=75.63 Aligned_cols=85 Identities=29% Similarity=0.370 Sum_probs=67.3
Q ss_pred CccccCCCCeEEEcCCCcCCCH------HHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc
Q 017119 17 HSAERNQDATAYVGNLDPQVTE------ELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te------~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~ 90 (377)
...++.-+..|+|.|+|.--.. .-|.++|+++|+|.++.+..+.+.| .+||.|++|.+.++|++|++.|||+.
T Consensus 51 p~~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ 129 (698)
T KOG2314|consen 51 PVTAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKR 129 (698)
T ss_pred cCccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccce
Confidence 4444567789999999863222 2357789999999999998787655 99999999999999999999999998
Q ss_pred cC-CceeEEeecC
Q 017119 91 LY-GKPIRVNKAS 102 (377)
Q Consensus 91 ~~-g~~i~v~~~~ 102 (377)
++ ++++.|+..+
T Consensus 130 ldknHtf~v~~f~ 142 (698)
T KOG2314|consen 130 LDKNHTFFVRLFK 142 (698)
T ss_pred ecccceEEeehhh
Confidence 77 5666665543
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.90 E-value=3.5e-05 Score=51.04 Aligned_cols=53 Identities=26% Similarity=0.549 Sum_probs=42.9
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHH
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~ 83 (377)
++.|-|.|.+.+..+ +|+.+|..||+|.++.+- ....+.||+|.+..+|++|+
T Consensus 1 ~~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 367889999876654 556689999999998883 34568999999999999985
No 158
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.88 E-value=0.014 Score=55.46 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCce
Q 017119 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 178 (377)
Q Consensus 125 ~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~ 178 (377)
|++|++-|+-+-.- .++...+ ..+|++=+.|.++++|++.++++..+.
T Consensus 92 dqELY~nf~y~q~r----~ffhtFe--gddc~aGLnF~~E~EA~~F~k~V~~r~ 139 (569)
T KOG3671|consen 92 DQELYQNFEYRQPR----TFFHTFE--GDDCQAGLNFASEEEAQKFRKKVQDRI 139 (569)
T ss_pred hHHhhhhceeccCc----cceeeec--cccceeeecccCHHHHHHHHHHHHHHh
Confidence 46677666543221 2222111 345567789999999999988876543
No 159
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.81 E-value=5.8e-05 Score=67.45 Aligned_cols=79 Identities=22% Similarity=0.417 Sum_probs=60.3
Q ss_pred CCeEEEcCCCCcCCHHHH------HHHHhhcCCeeecceeecCCCC---CCCcc-e-EEEEeCCHHHHHHHHHHHcCcee
Q 017119 111 GANLFIGNLDPDVDEKLL------YDTFSAFGVIVTNPKIMRDPDT---GNSRG-F-GFISYDSFEASDAAIEAMNGQYL 179 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l------~~~f~~~G~vv~~~~i~~d~~~---~~~kg-~-afV~f~~~~~A~~a~~~l~~~~~ 179 (377)
.+-+||-+|+..+.+|++ .++|.+||.|. +|+.++++ ..-.+ + .||.|.+.++|.+||...+|..+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~---KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIK---KIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhcccee---EEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 446899999888776662 57899999984 44444443 11222 2 38999999999999999999999
Q ss_pred cCeeeEEeeeeec
Q 017119 180 CNRQITVSYAYKK 192 (377)
Q Consensus 180 ~g~~l~v~~a~~~ 192 (377)
+||.|+..|..-+
T Consensus 191 DGr~lkatYGTTK 203 (480)
T COG5175 191 DGRVLKATYGTTK 203 (480)
T ss_pred cCceEeeecCchH
Confidence 9999999987544
No 160
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.79 E-value=2.9e-05 Score=71.55 Aligned_cols=84 Identities=20% Similarity=0.205 Sum_probs=66.7
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEecc---CCCC--C--------ccceEEEEeCCHHHHHHHH
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKD---RVTN--L--------HQGYGFVEFRSEEDADYAI 83 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~---~~~~--~--------~~g~afV~f~~~e~A~~A~ 83 (377)
...++-.+++|.+-||+.+..-+.|.++|..+|.|+.|+|++- ..+. . .+-+|+|+|.+.+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3445668999999999999999999999999999999999875 2111 1 2557999999999999999
Q ss_pred HHhcCcccCCceeEEee
Q 017119 84 KVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 84 ~~l~~~~~~g~~i~v~~ 100 (377)
+.++....+...++|..
T Consensus 304 e~~~~e~~wr~glkvkL 320 (484)
T KOG1855|consen 304 ELLNPEQNWRMGLKVKL 320 (484)
T ss_pred Hhhchhhhhhhcchhhh
Confidence 98876555555555543
No 161
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.76 E-value=5.2e-05 Score=58.10 Aligned_cols=72 Identities=18% Similarity=0.315 Sum_probs=42.7
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc-----eecCeeeEE
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ-----YLCNRQITV 186 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~-----~~~g~~l~v 186 (377)
+.|.|.++...++.++|+++|+.||.| ..|.+.+. ...|||.|.+.++|++|++++... .+.+..+++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V-~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEV-AYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--E-EEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCc-ceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 468888899999999999999999987 55565443 235899999999999999988644 455666655
Q ss_pred eeee
Q 017119 187 SYAY 190 (377)
Q Consensus 187 ~~a~ 190 (377)
+...
T Consensus 75 ~vLe 78 (105)
T PF08777_consen 75 EVLE 78 (105)
T ss_dssp E---
T ss_pred EECC
Confidence 5543
No 162
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.71 E-value=2.6e-05 Score=70.72 Aligned_cols=83 Identities=25% Similarity=0.494 Sum_probs=75.2
Q ss_pred CCCCeEE-EcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 22 NQDATAY-VGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 22 ~~~~~l~-v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
....++| |++|+.++++++|+.+|..+|.|..+++..+..++..+|||||.|.+...+..++.. +...+.++.+.+.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 4556666 999999999999999999999999999999999999999999999999999999997 88889999999988
Q ss_pred cCcCc
Q 017119 101 ASQDK 105 (377)
Q Consensus 101 ~~~~~ 105 (377)
.....
T Consensus 261 ~~~~~ 265 (285)
T KOG4210|consen 261 DEPRP 265 (285)
T ss_pred CCCCc
Confidence 76654
No 163
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.69 E-value=0.00012 Score=63.33 Aligned_cols=92 Identities=22% Similarity=0.255 Sum_probs=75.8
Q ss_pred HHHHHHHHhcCcccCCceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceE
Q 017119 78 DADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 157 (377)
Q Consensus 78 ~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~a 157 (377)
-|+.|...|.+....++.++|.|+... .|||.||...++.+.+.+.|+.||.|...|.++.| .++..+-+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a--------~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~--r~k~t~eg 75 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA--------ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD--RGKPTREG 75 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc--------eEEEEecchhhhhHHHHHhhhhcCccchheeeecc--cccccccc
Confidence 466677778899999999999998762 69999999999999999999999999554444444 46677778
Q ss_pred EEEeCCHHHHHHHHHHHcCcee
Q 017119 158 FISYDSFEASDAAIEAMNGQYL 179 (377)
Q Consensus 158 fV~f~~~~~A~~a~~~l~~~~~ 179 (377)
+|.|...-.|.+|+..++..-+
T Consensus 76 ~v~~~~k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 76 IVEFAKKPNARKAARRCREGGF 97 (275)
T ss_pred hhhhhcchhHHHHHHHhccCcc
Confidence 9999999999999998864443
No 164
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00023 Score=67.48 Aligned_cols=72 Identities=25% Similarity=0.282 Sum_probs=63.9
Q ss_pred cCCCCccccCCCCeEEEcCCCcCCCHHHHHHHHH-hcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHH
Q 017119 13 LLGQHSAERNQDATAYVGNLDPQVTEELLWELFV-QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84 (377)
Q Consensus 13 ~~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~ 84 (377)
.....+..-+..+|||||+|+--++.++|..+|+ .||.|..+-|-.|.+.+.-+|-|-|+|.+..+-.+||+
T Consensus 359 fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 359 FVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred hhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 3334555667899999999999999999999999 79999999998887778889999999999999999998
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.55 E-value=6.7e-05 Score=64.73 Aligned_cols=73 Identities=27% Similarity=0.367 Sum_probs=61.9
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCC--------CCccc----eEEEEeCCHHHHHHHHHHhcCcc
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVT--------NLHQG----YGFVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~--------~~~~g----~afV~f~~~e~A~~A~~~l~~~~ 90 (377)
....||+++||..++-..|+++|..||.|-.|.+.....+ +.+++ -|+|+|.+...|..+.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5689999999999999999999999999999999665443 12222 37899999999999999999999
Q ss_pred cCCce
Q 017119 91 LYGKP 95 (377)
Q Consensus 91 ~~g~~ 95 (377)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98865
No 166
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.54 E-value=0.00017 Score=66.58 Aligned_cols=78 Identities=22% Similarity=0.326 Sum_probs=58.6
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecC---CCC--CC--------CcceEEEEeCCHHHHHHHHHHHcC
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD---PDT--GN--------SRGFGFISYDSFEASDAAIEAMNG 176 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d---~~~--~~--------~kg~afV~f~~~~~A~~a~~~l~~ 176 (377)
.+++|.+.||+.+-..+.|.++|..+|.| +.|+|.+- ..+ +. .+-+|+|+|+..+.|.+|.+.|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~I-ksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSI-KSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccce-eeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46789999999999999999999999998 66677554 111 11 255799999999999999999865
Q ss_pred ceecCeeeEEee
Q 017119 177 QYLCNRQITVSY 188 (377)
Q Consensus 177 ~~~~g~~l~v~~ 188 (377)
......-|+|.+
T Consensus 309 e~~wr~glkvkL 320 (484)
T KOG1855|consen 309 EQNWRMGLKVKL 320 (484)
T ss_pred hhhhhhcchhhh
Confidence 544333333333
No 167
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.52 E-value=0.00046 Score=52.04 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=54.1
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccC-------CCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDR-------VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-------~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
+..++.|.|-+.+.. ....|.++|++||.|.+..-.... ......++..|+|.+..+|++||+ .|+..+.|
T Consensus 3 ~~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g 80 (100)
T PF05172_consen 3 QDSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSG 80 (100)
T ss_dssp -GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETT
T ss_pred CcCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcC
Confidence 445677888899887 667889999999998887522111 012345689999999999999999 88888887
Q ss_pred c-eeEEeecC
Q 017119 94 K-PIRVNKAS 102 (377)
Q Consensus 94 ~-~i~v~~~~ 102 (377)
. .+-|.+.+
T Consensus 81 ~~mvGV~~~~ 90 (100)
T PF05172_consen 81 SLMVGVKPCD 90 (100)
T ss_dssp CEEEEEEE-H
T ss_pred cEEEEEEEcH
Confidence 5 45566664
No 168
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.44 E-value=0.00023 Score=68.32 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=66.4
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCcee---cCeeeEEe
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL---CNRQITVS 187 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~---~g~~l~v~ 187 (377)
++.|||.||-.-.|.-+|+.++..-|.+|.+. +.|+ -|..|||.|.+.++|...+.+|+|..+ +.+.|.+.
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHH--HHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 46799999999999999999999777776554 4453 366799999999999999999999986 67899999
Q ss_pred eeeecCcC
Q 017119 188 YAYKKDTK 195 (377)
Q Consensus 188 ~a~~~~~~ 195 (377)
|.......
T Consensus 518 f~~~deld 525 (718)
T KOG2416|consen 518 FVRADELD 525 (718)
T ss_pred ecchhHHH
Confidence 99876543
No 169
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.35 E-value=0.00051 Score=51.78 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=52.6
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCC------CCCCcceEEEEeCCHHHHHHHHHHHcCceecCe-e
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD------TGNSRGFGFISYDSFEASDAAIEAMNGQYLCNR-Q 183 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~------~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~-~ 183 (377)
.+-|.|-+++.. ....|.++|++||.|++...+.++.. .-....+..|+|++..+|.+||+ .||..+.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 345778888877 45778899999999976543333211 11244578899999999999998 599999885 4
Q ss_pred eEEeeeeec
Q 017119 184 ITVSYAYKK 192 (377)
Q Consensus 184 l~v~~a~~~ 192 (377)
+-|.|++..
T Consensus 84 vGV~~~~~~ 92 (100)
T PF05172_consen 84 VGVKPCDPA 92 (100)
T ss_dssp EEEEE-HHH
T ss_pred EEEEEcHHh
Confidence 568888543
No 170
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.29 E-value=0.00015 Score=62.72 Aligned_cols=73 Identities=16% Similarity=0.325 Sum_probs=58.6
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCC--------CCCcce----EEEEeCCHHHHHHHHHHHcCc
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDT--------GNSRGF----GFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~--------~~~kg~----afV~f~~~~~A~~a~~~l~~~ 177 (377)
....||+++|+..+.-..|+++|++||.| ..|.|...... |.++.+ ++|+|.+...|.++.+.||+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeV-GRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEV-GRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhcccc-ceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 34579999999999999999999999998 55555544333 222222 789999999999999999999
Q ss_pred eecCee
Q 017119 178 YLCNRQ 183 (377)
Q Consensus 178 ~~~g~~ 183 (377)
.|.|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 998864
No 171
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.19 E-value=0.0024 Score=43.36 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=45.6
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhc---CCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHh
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQA---GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL 86 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l 86 (377)
...+|+|.||.. ++-+||+.+|..| .....|.++.|. .|-|.|.+.+.|.+|+.+|
T Consensus 4 rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 346899999955 8888999999999 235678887775 5789999999999999754
No 172
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.15 E-value=0.0011 Score=58.48 Aligned_cols=68 Identities=18% Similarity=0.332 Sum_probs=53.0
Q ss_pred HHHHHHHHhhcCCeeecceeecCCCCCCCcc-eEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecC
Q 017119 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRG-FGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193 (377)
Q Consensus 125 ~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg-~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~ 193 (377)
++++++.+++||.|. .|.|+.+...-.... -.||+|+..++|.+|+-.|||++|.|+.++..|....+
T Consensus 300 ede~keEceKyg~V~-~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEECEKYGKVG-NVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEK 368 (378)
T ss_pred HHHHHHHHHhhccee-eEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHh
Confidence 567889999999984 455555533322222 37999999999999999999999999999988876543
No 173
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.14 E-value=0.0023 Score=51.30 Aligned_cols=72 Identities=28% Similarity=0.345 Sum_probs=52.2
Q ss_pred CCCeEEEcCCC------cCCCHH---HHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 23 QDATAYVGNLD------PQVTEE---LLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 23 ~~~~l~v~nLp------~~~te~---~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
.+.||.|.=+. ....++ +|.+.|..||.+.-++++.+ .-+|+|.+.++|.+|++ ++++++.|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 45577776555 223332 56788889999988888665 37899999999999999 99999999
Q ss_pred ceeEEeecCc
Q 017119 94 KPIRVNKASQ 103 (377)
Q Consensus 94 ~~i~v~~~~~ 103 (377)
+.|+|+..+.
T Consensus 97 ~~l~i~LKtp 106 (146)
T PF08952_consen 97 RTLKIRLKTP 106 (146)
T ss_dssp EEEEEEE---
T ss_pred EEEEEEeCCc
Confidence 9999976543
No 174
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.13 E-value=0.00026 Score=61.34 Aligned_cols=56 Identities=30% Similarity=0.387 Sum_probs=48.8
Q ss_pred hcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCc
Q 017119 47 QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ 103 (377)
Q Consensus 47 ~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 103 (377)
+||+|++++|..+.. ..-+|-+||.|..+|+|++|++.||+-.+.|+.|..+++..
T Consensus 92 kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 92 KYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred Hhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 899999998877653 44578899999999999999999999999999999987653
No 175
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.04 E-value=0.00037 Score=60.39 Aligned_cols=66 Identities=18% Similarity=0.332 Sum_probs=50.6
Q ss_pred HHHHHHHh-hcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecC
Q 017119 126 KLLYDTFS-AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193 (377)
Q Consensus 126 ~~l~~~f~-~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~ 193 (377)
|||...|+ +||+| ++++|-.+ ....-+|-+||.|..+++|++|++.||+..+.|+.|.+++....+
T Consensus 83 Ed~f~E~~~kygEi-ee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEI-EELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhh-hhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 44555555 89998 44444433 334457779999999999999999999999999999999876544
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.0012 Score=63.17 Aligned_cols=76 Identities=26% Similarity=0.377 Sum_probs=57.2
Q ss_pred CeEEEcCCCCcC------CHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceec-Ceee
Q 017119 112 ANLFIGNLDPDV------DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC-NRQI 184 (377)
Q Consensus 112 ~~l~V~nl~~~~------~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~-g~~l 184 (377)
..|+|.|++.-- -...|..+|+++|.++ ...+..+.+ |..+||.|++|++.++|+.|++.|||+.|+ ++..
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~v-n~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIV-NMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhcccc-ceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 467777776532 1234678999999985 445555645 559999999999999999999999999987 4666
Q ss_pred EEeee
Q 017119 185 TVSYA 189 (377)
Q Consensus 185 ~v~~a 189 (377)
.|..-
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 66543
No 177
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=97.02 E-value=0.034 Score=49.45 Aligned_cols=157 Identities=13% Similarity=0.187 Sum_probs=100.2
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCC-------CCCccceEEEEeCCHHHHHHHHHH----hc-
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRV-------TNLHQGYGFVEFRSEEDADYAIKV----LN- 87 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~-------~~~~~g~afV~f~~~e~A~~A~~~----l~- 87 (377)
++=..|.|.+.||..+++--++...|.+||.|++|.++.+.. .........+.|-+.+.+...... |.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 445678899999999998888999999999999999998761 223445788999999887655432 22
Q ss_pred -CcccCCceeEEeecCc---------Ccc----------------ccCCCCeEEEcCCCCcCCHHHH-HHHH---hhcC-
Q 017119 88 -MIKLYGKPIRVNKASQ---------DKK----------------SLDVGANLFIGNLDPDVDEKLL-YDTF---SAFG- 136 (377)
Q Consensus 88 -~~~~~g~~i~v~~~~~---------~~~----------------~~~~~~~l~V~nl~~~~~~~~l-~~~f---~~~G- 136 (377)
+..+....+.+++..- .++ .....+.|.|.-- ..+.++++ ++.+ ..-+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n 169 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNN 169 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCC
Confidence 2345566666665431 100 0112334555433 33433333 2222 2222
Q ss_pred --CeeecceeecCC--CCCCCcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 137 --VIVTNPKIMRDP--DTGNSRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 137 --~vv~~~~i~~d~--~~~~~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
-|++.+.++... ...-.+.||++.|-+...|.+.++.|...
T Consensus 170 ~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 170 KRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred ceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 345666665332 23346779999999999999999988744
No 178
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.96 E-value=0.0044 Score=44.38 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=43.3
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNM 88 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~ 88 (377)
...++..+|+ +|.++...||.++|+.||.|. |..+.| ..|||...+.+.|..++..+..
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 3445566665 999999999999999999874 455444 3799999999999999997764
No 179
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.90 E-value=0.0028 Score=55.95 Aligned_cols=65 Identities=25% Similarity=0.079 Sum_probs=52.3
Q ss_pred HHHHHHHHHhcCCeEEEEEeccCCCCCcc-ceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 38 EELLWELFVQAGPVVNVYVPKDRVTNLHQ-GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 38 e~~L~~~f~~~G~i~~v~i~~~~~~~~~~-g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
++++.+.+++||.|.+|.|..+...-.+. -..||+|+..++|.+|+-.||+..|+|+.++..+-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 44667788999999999998765332222 258999999999999999999999999998876543
No 180
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.83 E-value=0.0026 Score=42.09 Aligned_cols=51 Identities=22% Similarity=0.476 Sum_probs=37.4
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHH
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~ 171 (377)
.|-|.+++.+.. +++..+|.+||+|+ .+.+- ....+.+|+|.+..+|++|+
T Consensus 3 wI~V~Gf~~~~~-~~vl~~F~~fGeI~-~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLA-EEVLEHFASFGEIV-DIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHH-HHHHHHHHhcCCEE-EEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 466777775554 55666999999995 33332 34568999999999999985
No 181
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.77 E-value=0.0034 Score=60.15 Aligned_cols=96 Identities=7% Similarity=0.100 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCcccCCceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhh--cCCeeecceeecCCCCCCCc
Q 017119 77 EDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA--FGVIVTNPKIMRDPDTGNSR 154 (377)
Q Consensus 77 e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~--~G~vv~~~~i~~d~~~~~~k 154 (377)
+-...+++..-++.++.+-.+|.-. ...|.|+++.|+..+..|+|+.||.. +-.++ +|.+..+.
T Consensus 148 dLI~Evlresp~VqvDekgekVrp~-------~kRcIvilREIpettp~e~Vk~lf~~encPk~i-scefa~N~------ 213 (684)
T KOG2591|consen 148 DLIVEVLRESPNVQVDEKGEKVRPN-------HKRCIVILREIPETTPIEVVKALFKGENCPKVI-SCEFAHND------ 213 (684)
T ss_pred HHHHHHHhcCCCceeccCccccccC-------cceeEEEEeecCCCChHHHHHHHhccCCCCCce-eeeeeecC------
Confidence 3334444444445555444444332 23457888999999999999999964 33333 44544332
Q ss_pred ceEEEEeCCHHHHHHHHHHHcC--ceecCeeeEEe
Q 017119 155 GFGFISYDSFEASDAAIEAMNG--QYLCNRQITVS 187 (377)
Q Consensus 155 g~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~v~ 187 (377)
-.||+|+++.||+.|.+.|.. +.|.|+.|..+
T Consensus 214 -nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 214 -NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred -ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 269999999999999998863 45777776444
No 182
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.70 E-value=0.0013 Score=63.36 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=62.9
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHH-hcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC---Cce
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFV-QAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY---GKP 95 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~---g~~ 95 (377)
....++.|||.||---+|..+|+.++. .+|.|+++ +|.. -+..|||.|.+.++|...+.+||++.|- .+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDk-----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDK-----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHH-----hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 445788999999999999999999998 45566666 4332 3457999999999999999999998764 577
Q ss_pred eEEeecCcC
Q 017119 96 IRVNKASQD 104 (377)
Q Consensus 96 i~v~~~~~~ 104 (377)
|.+.|....
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 777776544
No 183
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.58 E-value=0.0084 Score=48.09 Aligned_cols=57 Identities=16% Similarity=0.340 Sum_probs=43.8
Q ss_pred HHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeec
Q 017119 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192 (377)
Q Consensus 126 ~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~ 192 (377)
.+|.+.|..||+++ -++++.+ ..+|+|.+.++|.+|++ +++.+++|+.|+|+.....
T Consensus 51 ~~ll~~~~~~Gevv-LvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVV-LVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-EC-EEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceE-EEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 46788889999884 4466543 47999999999999997 8999999999999976554
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.58 E-value=0.016 Score=45.79 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=57.7
Q ss_pred CccccCCCCeEEEcCCCcCCCH-H---HHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC
Q 017119 17 HSAERNQDATAYVGNLDPQVTE-E---LLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY 92 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te-~---~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~ 92 (377)
+...+-.-.||.|+=|.+++.- + .|.+.++.||.|.+|.++ .+..|.|.|+|..+|-+|+.+++. ..-
T Consensus 79 k~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~p 150 (166)
T PF15023_consen 79 KNTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAP 150 (166)
T ss_pred ccCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCC
Confidence 3444556678999888776533 2 355667789999999763 344799999999999999998876 566
Q ss_pred CceeEEeec
Q 017119 93 GKPIRVNKA 101 (377)
Q Consensus 93 g~~i~v~~~ 101 (377)
|..+++.|-
T Consensus 151 gtm~qCsWq 159 (166)
T PF15023_consen 151 GTMFQCSWQ 159 (166)
T ss_pred CceEEeecc
Confidence 788888764
No 185
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.48 E-value=0.0024 Score=59.05 Aligned_cols=77 Identities=23% Similarity=0.387 Sum_probs=60.9
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc-eecCeeeEEeeee
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ-YLCNRQITVSYAY 190 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~-~~~g~~l~v~~a~ 190 (377)
+.+|++||....+-.||..+|....--...-.+ ...||+||.+.+...|.+|++.++++ ++.|+++.++++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl-------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee-------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 469999999999999999999765222222122 23579999999999999999999977 5789999999987
Q ss_pred ecCcC
Q 017119 191 KKDTK 195 (377)
Q Consensus 191 ~~~~~ 195 (377)
.++.+
T Consensus 75 ~kkqr 79 (584)
T KOG2193|consen 75 PKKQR 79 (584)
T ss_pred hHHHH
Confidence 76543
No 186
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.45 E-value=0.034 Score=42.76 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=53.9
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcC-CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAG-PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
+......+.+...++.++.++|..+.+.+- .|+.++|++|. ..++=.+++.|.+.++|+...+.+||..++.
T Consensus 9 ~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 9 DERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344455566666677777777777666653 58889998875 3456689999999999999999999987663
No 187
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=96.43 E-value=0.89 Score=43.65 Aligned_cols=24 Identities=25% Similarity=0.124 Sum_probs=19.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCc
Q 017119 66 QGYGFVEFRSEEDADYAIKVLNMI 89 (377)
Q Consensus 66 ~g~afV~f~~~e~A~~A~~~l~~~ 89 (377)
.+++-+.|.++++|++.++.+...
T Consensus 115 dc~aGLnF~~E~EA~~F~k~V~~r 138 (569)
T KOG3671|consen 115 DCQAGLNFASEEEAQKFRKKVQDR 138 (569)
T ss_pred cceeeecccCHHHHHHHHHHHHHH
Confidence 457778999999999998876543
No 188
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.39 E-value=0.0014 Score=59.30 Aligned_cols=83 Identities=22% Similarity=0.284 Sum_probs=64.7
Q ss_pred CCCCeEEEcCCCcCCCHHHHH---HHHHhcCCeEEEEEeccCCC---CCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 22 NQDATAYVGNLDPQVTEELLW---ELFVQAGPVVNVYVPKDRVT---NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~---~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
.+++.+||-+|+.+..++++. ++|.+||.|..|.+.++... ......+||+|+.+|+|..||...+++.++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 456788999999888777764 47889999999998876621 112234899999999999999999999999999
Q ss_pred eEEeecCcC
Q 017119 96 IRVNKASQD 104 (377)
Q Consensus 96 i~v~~~~~~ 104 (377)
++..+...+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 777665443
No 189
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.34 E-value=0.017 Score=39.19 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=41.6
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhc----CCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHH
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAF----GVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAM 174 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~----G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l 174 (377)
..|+|.+++ +++.+||+.+|..| +. ..+..+.|. -|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~--~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP--FRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC--ceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 478999986 57789999999999 43 345566553 2789999999999999864
No 190
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.30 E-value=0.05 Score=41.85 Aligned_cols=69 Identities=17% Similarity=0.159 Sum_probs=54.2
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g 181 (377)
...+.+...++.++.++|..+.+.+-..++.++|++|.. .++-.++++|.+.++|++..+.+||+.++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344666777888888888877777777777888887743 344458899999999999999999998864
No 191
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.24 E-value=0.017 Score=41.38 Aligned_cols=54 Identities=15% Similarity=0.333 Sum_probs=40.2
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcC
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~ 176 (377)
..+|. ++..+...||.++|+.||.| .|..+.| .-|||...+.+.|..++..+..
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I--~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQI--YVSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCE--EEEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcE--EEEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 45565 88899999999999999998 2344443 2499999999999999998864
No 192
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.21 E-value=0.0061 Score=61.73 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=66.7
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC--ceeE
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG--KPIR 97 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g--~~i~ 97 (377)
.....+.+|+++|..++....|.+.|..||.|..|.+ ....-||||.|++...|+.|++.+.+..+++ +.++
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy------~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY------RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeec------ccCCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 4557789999999999999999999999999998766 3344699999999999999999999988885 6677
Q ss_pred EeecCc
Q 017119 98 VNKASQ 103 (377)
Q Consensus 98 v~~~~~ 103 (377)
|.++..
T Consensus 525 vdla~~ 530 (975)
T KOG0112|consen 525 VDLASP 530 (975)
T ss_pred cccccC
Confidence 777643
No 193
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.05 E-value=0.013 Score=56.24 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=60.4
Q ss_pred CCcCCCCccccCCCCeEEEcCCCcCCCHHHHHHHHHh--cCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 017119 11 ANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQ--AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNM 88 (377)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~ 88 (377)
.+..+++-.-..+.+.|+|+-|+..+-.++|+.+|+. |-++.+|.+..+. -=||+|++..||+.|.+.|..
T Consensus 162 vDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 162 VDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred eccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHH
Confidence 3334444444556677888999999999999999975 6678888885543 248999999999999988753
Q ss_pred --cccCCceeEE
Q 017119 89 --IKLYGKPIRV 98 (377)
Q Consensus 89 --~~~~g~~i~v 98 (377)
++|.|+.|..
T Consensus 235 evk~fqgKpImA 246 (684)
T KOG2591|consen 235 EVKTFQGKPIMA 246 (684)
T ss_pred HHHhhcCcchhh
Confidence 4566766643
No 194
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.00 E-value=0.0083 Score=52.15 Aligned_cols=64 Identities=27% Similarity=0.314 Sum_probs=55.9
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNM 88 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~ 88 (377)
...|||.||...++-+.|.+.|+.||.|+...++.|. .+...+-++|+|...-.|.+|++.+..
T Consensus 31 ~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 31 HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred cceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhcc
Confidence 3789999999999999999999999999887776654 467778899999999999999987753
No 195
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.77 E-value=0.016 Score=53.39 Aligned_cols=73 Identities=11% Similarity=0.257 Sum_probs=55.1
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecC---CCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD---PDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d---~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
.|.|.||...++.++++.+|...|.| .++.|+-+ .........|||.|.|.+++..|-. |.+..+-++.|.|.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI-~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKI-PELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhcccc-ccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 68999999999999999999999998 56676543 2233455679999999998887765 55555555555444
No 196
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.41 E-value=0.064 Score=37.03 Aligned_cols=55 Identities=13% Similarity=0.256 Sum_probs=43.8
Q ss_pred cCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 122 ~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.++-++++..+.+|+.. +|..|+ .| -||.|.+.++|+++....++..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~----~I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD----RIRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc----eEEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46779999999999864 555452 23 379999999999999999999988777654
No 197
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.39 E-value=0.04 Score=49.10 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCee-eEEeeeeecCcCC
Q 017119 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ-ITVSYAYKKDTKG 196 (377)
Q Consensus 125 ~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~-l~v~~a~~~~~~~ 196 (377)
-..|..+|++||.||+. + +...-.+.+|.|.++.+|++||. .+|+.|+|.. |-|.-+.++....
T Consensus 210 ~s~vL~~F~~cG~Vvkh--v-----~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDksvi~ 274 (350)
T KOG4285|consen 210 VSIVLNLFSRCGEVVKH--V-----TPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDKSVIN 274 (350)
T ss_pred hhHHHHHHHhhCeeeee--e-----cCCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCHHHhc
Confidence 35788999999999743 2 23345588999999999999998 4888888754 5777777765543
No 198
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.27 E-value=0.045 Score=46.35 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=43.6
Q ss_pred CHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHc--CceecCeeeEEeeeeec
Q 017119 124 DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN--GQYLCNRQITVSYAYKK 192 (377)
Q Consensus 124 ~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~--~~~~~g~~l~v~~a~~~ 192 (377)
..+.|+++|..|+.++..+.+ + +-+-..|.|.+.++|.+|+..|+ +..+.|..+++.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L-~------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL-K------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE-T------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEc-C------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 457899999999988654333 2 22348899999999999999999 89999999999999443
No 199
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.17 E-value=0.067 Score=38.07 Aligned_cols=60 Identities=18% Similarity=0.347 Sum_probs=35.5
Q ss_pred CcCCHHHHHHHHhhcCCe----eecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 121 PDVDEKLLYDTFSAFGVI----VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 121 ~~~~~~~l~~~f~~~G~v----v~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++..+|..++...+.+ +-.+++. ..|+||+... +.|.++++.|++..+.|+.++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 356778898888877665 2233443 3378998854 5899999999999999999999864
No 200
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.16 E-value=0.018 Score=48.59 Aligned_cols=73 Identities=14% Similarity=0.158 Sum_probs=45.2
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHh-cCCe---EEEEEeccCC--CCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQ-AGPV---VNVYVPKDRV--TNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~-~G~i---~~v~i~~~~~--~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
+....+|.|++||..+||+++++.++. ++.. ..+....... ....-..|||.|.+.+++....+.+++..+.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 455669999999999999999997776 5554 2333112211 11223469999999999999999888866543
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.02 E-value=0.17 Score=45.21 Aligned_cols=73 Identities=22% Similarity=0.307 Sum_probs=51.7
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCc-eeEEeecC
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK-PIRVNKAS 102 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~-~i~v~~~~ 102 (377)
+.-|-|-+++.. .-..|..+|++||.|.+...- ..-+|-+|.|.+.-+|++||. .+++.|+|. .|-|..+.
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecC
Confidence 555666677663 345688899999998876553 334589999999999999999 666666653 34455544
Q ss_pred cC
Q 017119 103 QD 104 (377)
Q Consensus 103 ~~ 104 (377)
++
T Consensus 269 Dk 270 (350)
T KOG4285|consen 269 DK 270 (350)
T ss_pred CH
Confidence 33
No 202
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=0.15 Score=49.48 Aligned_cols=128 Identities=17% Similarity=0.259 Sum_probs=76.9
Q ss_pred cCCCCeEEEcCCCcC-CCHHHHHHHHHhc----CCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 21 RNQDATAYVGNLDPQ-VTEELLWELFVQA----GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~-~te~~L~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
...+++|-|-|+.|+ +...+|.-+|..| |.|.+|.|..... | .+.|..-.+.|-.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF-G-------------------keRM~eEeV~GP~ 230 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF-G-------------------KERMKEEEVHGPP 230 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh-h-------------------HHHhhhhcccCCh
Confidence 346788999999886 6788999998877 5899998866541 1 1123333344443
Q ss_pred eEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHc
Q 017119 96 IRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175 (377)
Q Consensus 96 i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~ 175 (377)
+.+..-........ .++...+...+..+.+|+.- ..+ -=||+|+|.+.+.|...++.++
T Consensus 231 ~el~~~~e~~~~s~---------sD~ee~~~~~~~kLR~Yq~~--rLk----------YYyAVvecDsi~tA~~vYe~CD 289 (650)
T KOG2318|consen 231 KELFKPVEEYKESE---------SDDEEEEDVDREKLRQYQLN--RLK----------YYYAVVECDSIETAKAVYEECD 289 (650)
T ss_pred hhhccccccCcccc---------cchhhhhhHHHHHHHHHHhh--hhe----------eEEEEEEecCchHHHHHHHhcC
Confidence 33222111111110 12222223345556666532 111 1269999999999999999999
Q ss_pred CceecC--eeeEEeee
Q 017119 176 GQYLCN--RQITVSYA 189 (377)
Q Consensus 176 ~~~~~g--~~l~v~~a 189 (377)
|..+.. ..|.++|.
T Consensus 290 G~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 290 GIEFESSANKLDLRFI 305 (650)
T ss_pred cceeccccceeeeeec
Confidence 999864 55556554
No 203
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.97 E-value=0.06 Score=45.59 Aligned_cols=62 Identities=29% Similarity=0.204 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhc--CcccCCceeEEeecCcC
Q 017119 37 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN--MIKLYGKPIRVNKASQD 104 (377)
Q Consensus 37 te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~--~~~~~g~~i~v~~~~~~ 104 (377)
..+.|+++|..|+.+..+...+. -+...|.|.+.++|++|...|+ +..+.|..+++.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999888877554 3468899999999999999999 89999999999888443
No 204
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.58 E-value=0.039 Score=46.55 Aligned_cols=82 Identities=13% Similarity=0.180 Sum_probs=49.3
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhh-cCCeeecceee--cCCC-CC-CCcceEEEEeCCHHHHHHHHHHHcCceecC----
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSA-FGVIVTNPKIM--RDPD-TG-NSRGFGFISYDSFEASDAAIEAMNGQYLCN---- 181 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~-~G~vv~~~~i~--~d~~-~~-~~kg~afV~f~~~~~A~~a~~~l~~~~~~g---- 181 (377)
..+|.|++|+..+|++++++.+.. ++.......+. .... .. ..-..|||.|.+.+++...++.++|..+.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 458999999999999999997765 44432111111 1111 11 122349999999999999999999987743
Q ss_pred -eeeEEeeeeec
Q 017119 182 -RQITVSYAYKK 192 (377)
Q Consensus 182 -~~l~v~~a~~~ 192 (377)
....|++|--+
T Consensus 87 ~~~~~VE~Apyq 98 (176)
T PF03467_consen 87 EYPAVVEFAPYQ 98 (176)
T ss_dssp EEEEEEEE-SS-
T ss_pred CcceeEEEcchh
Confidence 23477777554
No 205
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.51 E-value=0.022 Score=53.73 Aligned_cols=74 Identities=18% Similarity=0.085 Sum_probs=56.9
Q ss_pred CeEEEcCCCcCC-CHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCc
Q 017119 25 ATAYVGNLDPQV-TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ 103 (377)
Q Consensus 25 ~~l~v~nLp~~~-te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 103 (377)
+.|-+.-++..+ +-++|...|.+||.|.+|.+-.. .-.|.|+|.+..+|-+|.. .++..|+++.|+|.|.+.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 334444444443 55689999999999999988433 3468999999999987776 788899999999999876
Q ss_pred Cc
Q 017119 104 DK 105 (377)
Q Consensus 104 ~~ 105 (377)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 43
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.33 E-value=0.039 Score=54.34 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=61.5
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
-...+|||+|+...+.++-++.++..||.|.+++... |||+.|.....+.+|+..++...++|..+.++.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4667999999999999999999999999998876633 899999999999999999998888887776654
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.26 E-value=0.17 Score=47.73 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=59.2
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcC-CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAG-PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
+..|.|-.+|..++-.||..|+..|- .|.++++++|. -..+=..+|.|.+.++|....+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 88999999999999999999998764 59999999965 3345578999999999999999999987774
No 208
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.92 E-value=0.069 Score=39.14 Aligned_cols=65 Identities=18% Similarity=0.177 Sum_probs=45.4
Q ss_pred EEEEeCCHHHHHHHHHHh-cCcccCCceeEEeecCcCc--------cccCCCCeEEEcCCCCcCCHHHHHHHHh
Q 017119 69 GFVEFRSEEDADYAIKVL-NMIKLYGKPIRVNKASQDK--------KSLDVGANLFIGNLDPDVDEKLLYDTFS 133 (377)
Q Consensus 69 afV~f~~~e~A~~A~~~l-~~~~~~g~~i~v~~~~~~~--------~~~~~~~~l~V~nl~~~~~~~~l~~~f~ 133 (377)
|+|+|.+.+-|++.++.- +...++++.++|...--.. ....+.++|.|.||+..+.+++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999988732 2345556666654321111 2234567899999999999999998764
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.82 E-value=0.34 Score=33.46 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 35 QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 35 ~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
.++-++|+..++.|+- .+|. .++ + --||.|.+.++|++|.+..++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~--~d~-t-----GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIR--DDR-T-----GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEE--ecC-C-----EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5788999999999963 3333 222 2 2589999999999999999998887776654
No 210
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.79 E-value=0.04 Score=50.02 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=57.5
Q ss_pred CeEEEcCCCCcCCHHHHH---HHHhhcCCeeecceeecCCC-CCCCcc--eEEEEeCCHHHHHHHHHHHcCceecCeeeE
Q 017119 112 ANLFIGNLDPDVDEKLLY---DTFSAFGVIVTNPKIMRDPD-TGNSRG--FGFISYDSFEASDAAIEAMNGQYLCNRQIT 185 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~---~~f~~~G~vv~~~~i~~d~~-~~~~kg--~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 185 (377)
+-+||-+|+..+.++++. +.|.+||.| ..+.+.++.. ....-+ -++|+|+.+++|..||+..++..++|+.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki-~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKI-NKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccc-eEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 457888888877777664 467777777 3444444432 111111 279999999999999999999999999988
Q ss_pred EeeeeecC
Q 017119 186 VSYAYKKD 193 (377)
Q Consensus 186 v~~a~~~~ 193 (377)
+.+...+-
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 87766543
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=92.59 E-value=0.62 Score=33.04 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=36.2
Q ss_pred cCCCHHHHHHHHHhcCC-----eEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 34 PQVTEELLWELFVQAGP-----VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 34 ~~~te~~L~~~f~~~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
..++..+|..++.+.+. |-.|.+.. .|+||+.... .|+++++.|++..+.|+.++|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45788899999987753 56677643 3788887664 788899999999999999998753
No 212
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.19 E-value=0.36 Score=38.41 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=50.6
Q ss_pred CCeEEEcCCCCcC-CHHH---HHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 111 GANLFIGNLDPDV-DEKL---LYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 111 ~~~l~V~nl~~~~-~~~~---l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
-.+|.|+=|..++ ..+| |...++.||.| ..+.+. .+.-|.|.|.|..+|-+|+.+++. ..-|..+++
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI-~SVT~c-------GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPI-QSVTLC-------GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCc-ceeeec-------CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 4578887666654 2334 45566789998 343332 344599999999999999999877 566788888
Q ss_pred eeee
Q 017119 187 SYAY 190 (377)
Q Consensus 187 ~~a~ 190 (377)
.|..
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 8864
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.88 E-value=0.18 Score=49.84 Aligned_cols=73 Identities=15% Similarity=0.231 Sum_probs=60.6
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
......++||+|+.+.+.++-++.++..+|.|.+. +... |+|..|.......+|+..|....++|+.+.+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~-kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSW-KRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhh-hhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 34455789999999999999999999999998533 2221 8999999999999999999999999888766
Q ss_pred eee
Q 017119 187 SYA 189 (377)
Q Consensus 187 ~~a 189 (377)
...
T Consensus 106 ~~d 108 (668)
T KOG2253|consen 106 NVD 108 (668)
T ss_pred cch
Confidence 654
No 214
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=91.57 E-value=0.7 Score=43.81 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=58.2
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g 181 (377)
+..|+|-.++..++-.||..++..+-..|..++|+||.. ..+=..+|+|.+.++|....+.+||+.|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 567999999999999999999998877788899998632 233347899999999999999999998864
No 215
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.13 E-value=0.15 Score=48.32 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=49.3
Q ss_pred CHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecC
Q 017119 124 DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193 (377)
Q Consensus 124 ~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~ 193 (377)
+-++|..+|.+||.| ..|.+-.. --.|.|+|.+..+|-+|.. ..+..|+++.|+|.|.+...
T Consensus 386 t~a~ln~hfA~fG~i-~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEI-ENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hHhhhhhhhhhcCcc-ccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 457899999999998 44444222 2358999999999988775 68999999999999998744
No 216
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=90.92 E-value=0.47 Score=38.77 Aligned_cols=108 Identities=19% Similarity=0.128 Sum_probs=67.1
Q ss_pred eEEEcCC-C-cCCCHHHHHHHHHh-cCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 26 TAYVGNL-D-PQVTEELLWELFVQ-AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 26 ~l~v~nL-p-~~~te~~L~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
...|+.+ . ...+-..|.+.+.+ ++....+.+..- ..++..++|.+.++++++++ .....+++..+.+..-+
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWS 90 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhc
Confidence 3444444 2 33566667666654 333333333221 34689999999999999988 44555667777766555
Q ss_pred cCccccCC---CCe--EEEcCCCCc-CCHHHHHHHHhhcCCee
Q 017119 103 QDKKSLDV---GAN--LFIGNLDPD-VDEKLLYDTFSAFGVIV 139 (377)
Q Consensus 103 ~~~~~~~~---~~~--l~V~nl~~~-~~~~~l~~~f~~~G~vv 139 (377)
........ ... |-|.||+.. .+++-++.+.+.+|.++
T Consensus 91 ~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i 133 (153)
T PF14111_consen 91 PDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPI 133 (153)
T ss_pred ccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeE
Confidence 33221111 122 556788875 67788899999999884
No 217
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.74 E-value=0.18 Score=51.24 Aligned_cols=71 Identities=27% Similarity=0.279 Sum_probs=57.1
Q ss_pred EEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC--CceeEEeecCcC
Q 017119 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY--GKPIRVNKASQD 104 (377)
Q Consensus 28 ~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~--g~~i~v~~~~~~ 104 (377)
++.|..-..+..-|.-+|.+||.|.+++..++. ..|.|+|.+.+.|..|+++|+++++. |...+|.+++..
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 344445567788899999999999999886654 47999999999999999999997654 777788777543
No 218
>PHA03247 large tegument protein UL36; Provisional
Probab=90.56 E-value=22 Score=41.77 Aligned_cols=16 Identities=25% Similarity=-0.024 Sum_probs=8.7
Q ss_pred CCCHHHHHHHHHhcCC
Q 017119 35 QVTEELLWELFVQAGP 50 (377)
Q Consensus 35 ~~te~~L~~~f~~~G~ 50 (377)
++|.-||.-.---||.
T Consensus 2296 ~VtAmDia~~A~L~GA 2311 (3151)
T PHA03247 2296 RVTVMDLVLAATLLGA 2311 (3151)
T ss_pred cchHHHHHHHHHHhCC
Confidence 3566666554445553
No 219
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.38 E-value=5.1 Score=38.39 Aligned_cols=7 Identities=0% Similarity=-0.173 Sum_probs=4.1
Q ss_pred EEEeCCH
Q 017119 158 FISYDSF 164 (377)
Q Consensus 158 fV~f~~~ 164 (377)
.++|.+.
T Consensus 318 e~dfSDD 324 (483)
T KOG2236|consen 318 EQDFSDD 324 (483)
T ss_pred hhccchH
Confidence 3677553
No 220
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.54 E-value=0.26 Score=50.11 Aligned_cols=73 Identities=21% Similarity=0.302 Sum_probs=57.7
Q ss_pred EEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCcee--cCeeeEEeeeee
Q 017119 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITVSYAYK 191 (377)
Q Consensus 114 l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~a~~ 191 (377)
.++.|..-.++...|..+|.+||.+. +...++|. ..|.|+|.+.+.|..|+++|+|+++ .|-..+|.+++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~-s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVA-SAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchh-hheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 45556667778889999999999984 44555553 3689999999999999999999976 477788888875
Q ss_pred cC
Q 017119 192 KD 193 (377)
Q Consensus 192 ~~ 193 (377)
-.
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 43
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.56 E-value=2 Score=40.12 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=45.4
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~ 173 (377)
-..|-|.+++.....+||..+|+.|+.---+|+++.|. .+|..|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 34688999999999999999999998763344555543 599999999999999974
No 222
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=85.26 E-value=1.2 Score=30.95 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=46.7
Q ss_pred HHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecC
Q 017119 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193 (377)
Q Consensus 126 ~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~ 193 (377)
++|.+.|...|.-+..+.-+..+.++.....-||+++...+ ..+.++=+.+++..|+|+....+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~---~k~i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPN---NKEIYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcc---ccceeehHhhCCeEEEEecCCCCC
Confidence 57888899889877777777776666666677888776655 333455567888999999876543
No 223
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=84.70 E-value=1.9 Score=38.44 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=36.1
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHH
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFE 165 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~ 165 (377)
.||++||+.++.-.||+..+.+.+-+-..+.+ ..+.|-||+.|.+..
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 59999999999999999999988766222221 245677999998754
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.11 E-value=2.6 Score=39.41 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=47.2
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCC-eEEEEEeccCCCCCccceEEEEeCCHHHHHHHHH
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~ 84 (377)
.+=-+.|-|.+++.....+||...|+.|+. --+|+++.|. .||..|.+...|..|+.
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 345578899999999999999999999975 3456666554 79999999999999998
No 225
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=81.66 E-value=1.7 Score=30.03 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=44.9
Q ss_pred HHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeec
Q 017119 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192 (377)
Q Consensus 126 ~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~ 192 (377)
++|++.|..+|--+..+.-+..+.++.....-+|+.....+-.. .|+=+.++++++.|+...+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 57888999999887777777777766665666777766543332 45566778888888866543
No 226
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=81.44 E-value=4.3 Score=36.56 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=60.7
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCC-------CCCCCcceEEEEeCCHHHHHHHH----HHHc--Cc
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP-------DTGNSRGFGFISYDSFEASDAAI----EAMN--GQ 177 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~-------~~~~~kg~afV~f~~~~~A~~a~----~~l~--~~ 177 (377)
.+.|.+.|+..+++-..+...|.+||.| +.++++.+. +.......+.+.|-+.+.|.... +.|. +.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pI-ESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPI-ESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCce-eEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999998 788888775 12234456889999998886543 4444 34
Q ss_pred eecCeeeEEeeeeec
Q 017119 178 YLCNRQITVSYAYKK 192 (377)
Q Consensus 178 ~~~g~~l~v~~a~~~ 192 (377)
.+....|++.|..-+
T Consensus 94 ~L~S~~L~lsFV~l~ 108 (309)
T PF10567_consen 94 KLKSESLTLSFVSLN 108 (309)
T ss_pred hcCCcceeEEEEEEe
Confidence 577888888887754
No 227
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=81.03 E-value=0.54 Score=41.56 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=27.6
Q ss_pred CCCeEEEcCCCcC------------CCHHHHHHHHHhcCCeEEEEE
Q 017119 23 QDATAYVGNLDPQ------------VTEELLWELFVQAGPVVNVYV 56 (377)
Q Consensus 23 ~~~~l~v~nLp~~------------~te~~L~~~f~~~G~i~~v~i 56 (377)
...|||+.+|+.. -+++.|+..|+.||.|..|.|
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 4568999998754 367789999999999988877
No 228
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=80.50 E-value=2.5 Score=43.49 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=25.1
Q ss_pred ccCCCCeEEEcCCCcCC-CHHHHHHHHHhcC
Q 017119 20 ERNQDATAYVGNLDPQV-TEELLWELFVQAG 49 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~-te~~L~~~f~~~G 49 (377)
.+..+|||+|.+|+.++ ++++|.++|++.+
T Consensus 204 ~~~ssRTvlis~LP~~~~~~e~L~~~~~kl~ 234 (827)
T COG5594 204 NNLSSRTVLISGLPSELRSDEELKELFDKLK 234 (827)
T ss_pred cCCCCceEEeecCChhhcCchhHHHHHhhcC
Confidence 55689999999999874 6778999999864
No 229
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=79.59 E-value=0.49 Score=41.83 Aligned_cols=81 Identities=23% Similarity=0.504 Sum_probs=46.3
Q ss_pred CeEEEcCCCCc------------CCHHHHHHHHhhcCCeeeccee-----ecCCCCCCC-----cceE---------EEE
Q 017119 112 ANLFIGNLDPD------------VDEKLLYDTFSAFGVIVTNPKI-----MRDPDTGNS-----RGFG---------FIS 160 (377)
Q Consensus 112 ~~l~V~nl~~~------------~~~~~l~~~f~~~G~vv~~~~i-----~~d~~~~~~-----kg~a---------fV~ 160 (377)
.+||+.+|+-. -+++.|+..|+.||.| ..|.| ++..-||+. +||+ ||.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~i-r~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEI-RNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccc-eecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 46777777532 3567899999999998 33333 222233433 3332 444
Q ss_pred eCCHHHHHHHHHHHcCcee----cC----eeeEEeeeeecC
Q 017119 161 YDSFEASDAAIEAMNGQYL----CN----RQITVSYAYKKD 193 (377)
Q Consensus 161 f~~~~~A~~a~~~l~~~~~----~g----~~l~v~~a~~~~ 193 (377)
|-....-..|++.|.+.++ +| -.++|.|.+...
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrh 269 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRH 269 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhh
Confidence 4444455667777776654 22 245666655443
No 230
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=76.63 E-value=0.79 Score=42.81 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=51.8
Q ss_pred CCCeEEEcCCCcCCCHH--------HHHHHHHh--cCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHH
Q 017119 23 QDATAYVGNLDPQVTEE--------LLWELFVQ--AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~--------~L~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~ 84 (377)
..+.+|+.++....+.+ ++...|.. .+.+..+...++.....++|..|++|...+.++++..
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45678888887776655 88999988 6778888888888778899999999999999999875
No 231
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=76.13 E-value=2.9 Score=32.55 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHH-HHHHH
Q 017119 36 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA-DYAIK 84 (377)
Q Consensus 36 ~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A-~~A~~ 84 (377)
++.++|++.|+.|..++ ++...+. .-++|+++|+|...-+- ..|++
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 35578999999998764 5555554 35789999999875543 34444
No 232
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=75.40 E-value=7 Score=26.47 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=16.3
Q ss_pred HHHHHHHHhcCCeEEEEEec
Q 017119 39 ELLWELFVQAGPVVNVYVPK 58 (377)
Q Consensus 39 ~~L~~~f~~~G~i~~v~i~~ 58 (377)
++||++|+.+|.|.-+.+..
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999987766643
No 233
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=75.28 E-value=7.2 Score=34.85 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=38.0
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHH
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEED 78 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~ 78 (377)
-...|+++||+.++.-.||+..+++.+-+ -..|.+ .-++|-||+.|.+...
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~isw----kg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISW----KGHFGKCFLHFGNRKG 379 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCC-ceeEee----ecCCcceeEecCCccC
Confidence 34569999999999999999999987642 233322 3356789999987654
No 234
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=72.13 E-value=68 Score=28.08 Aligned_cols=6 Identities=33% Similarity=0.407 Sum_probs=2.7
Q ss_pred eeEEee
Q 017119 183 QITVSY 188 (377)
Q Consensus 183 ~l~v~~ 188 (377)
.|.|+.
T Consensus 74 ~i~vei 79 (341)
T KOG2893|consen 74 NIHVEI 79 (341)
T ss_pred ceeEEE
Confidence 344443
No 235
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=71.90 E-value=5 Score=31.05 Aligned_cols=132 Identities=13% Similarity=0.119 Sum_probs=63.5
Q ss_pred CCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE--EeecCcCccccCCCC
Q 017119 35 QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR--VNKASQDKKSLDVGA 112 (377)
Q Consensus 35 ~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~--v~~~~~~~~~~~~~~ 112 (377)
+.++.+|.++++++-+-.+-.|-.+..-...|.-+-|.|+..+...+--+.+-.+.-.|+.+. |..+.........
T Consensus 6 ~y~dadl~kl~eeweenddddiee~d~pehkr~~~~ld~eki~~kakdpedil~mskkgktlmlfv~v~~psqp~~kd-- 83 (164)
T KOG4357|consen 6 DYNDADLAKLLEEWEENDDDDIEEDDKPEHKRKPAPLDFEKIDAKAKDPEDILKMSKKGKTLMLFVGVSDPSQPDEKD-- 83 (164)
T ss_pred hcchHHHHHHHHHHHhcccccccccccccccCCCCCCChhhcCcccCChHHHHHHhhcCceEEEEEEecCCCCCChhh--
Confidence 467888999998886533333433332233344556666655443322222222223344443 2222211111110
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceec
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~ 180 (377)
|+-+...+|.--.-++|...-.+ . +++.+.. .|+.-|.+-+.|-.|.+.|-++.++
T Consensus 84 ---~rpftee~tqiwq~qlfn~~~dl-q--~fii~dd------raifm~kdge~a~e~k~fll~qd~~ 139 (164)
T KOG4357|consen 84 ---IRPFTEEITQIWQGQLFNAHVDL-Q--RFIIDDD------RAIFMFKDGEQAFEAKDFLLGQDFC 139 (164)
T ss_pred ---ccchhHHHHHHHHHHhhccccce-E--EEEecCC------eEEEEEeChhHHHHHHHHhhccchh
Confidence 11111112221223345544333 2 3333311 3788899999999999988777654
No 236
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=71.64 E-value=9.1 Score=29.32 Aligned_cols=110 Identities=17% Similarity=0.181 Sum_probs=60.6
Q ss_pred CCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCc--ccCCceeEEeecCcCcc---
Q 017119 32 LDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMI--KLYGKPIRVNKASQDKK--- 106 (377)
Q Consensus 32 Lp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~--~~~g~~i~v~~~~~~~~--- 106 (377)
|+..+ +.|.++|+.-|+|.+|..+... .+. .|+-.+++. .++|. |++........
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtqy-------------pdn----dal~~~~G~lE~vDg~-i~IGs~q~~~sV~i 70 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQY-------------PDN----DALLYVHGTLEQVDGN-IRIGSGQTPASVRI 70 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEecc-------------CCc----hhhheeeeehhhccCc-EEEccCCCcccEEE
Confidence 45444 4689999999999998764432 111 122223332 23333 45433321110
Q ss_pred -ccCCCCeEEEcCCCCcCCHHHHHHHHhh---cCCeeecceeecCCCCCCCcceEEEEeCCH
Q 017119 107 -SLDVGANLFIGNLDPDVDEKLLYDTFSA---FGVIVTNPKIMRDPDTGNSRGFGFISYDSF 164 (377)
Q Consensus 107 -~~~~~~~l~V~nl~~~~~~~~l~~~f~~---~G~vv~~~~i~~d~~~~~~kg~afV~f~~~ 164 (377)
....+ -.|.--++.+|..+++++|.+ |-.| ....+.+|-.-..+-..||..|...
T Consensus 71 ~gTPsg--nnv~F~PYTlT~~e~r~iF~Epm~YQGI-TReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 71 QGTPSG--NNVIFPPYTLTYNELRQIFREPMVYQGI-TREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ecCCCC--CceecCceeeeHHHHHHHHhhhhhhccc-cHHHHhhcCCCCCceEEEEEEeccc
Confidence 00011 113345778899999999975 4444 3335666654445566788888665
No 237
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=70.89 E-value=5.3 Score=33.34 Aligned_cols=75 Identities=17% Similarity=0.153 Sum_probs=49.7
Q ss_pred CCeEEEcCCCcCCC-----HHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCc-eeE
Q 017119 24 DATAYVGNLDPQVT-----EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK-PIR 97 (377)
Q Consensus 24 ~~~l~v~nLp~~~t-----e~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~-~i~ 97 (377)
..++++.+|..++- ......+|.+|.+.....+++ +.++..|.|.+.+.|.+|...++...+.|+ .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 34566666654432 223455677666555444433 345677899999999999999999999988 666
Q ss_pred EeecCcC
Q 017119 98 VNKASQD 104 (377)
Q Consensus 98 v~~~~~~ 104 (377)
.-++...
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 6555443
No 238
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=70.75 E-value=18 Score=31.72 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=35.7
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEE-eccCCCCC-----------ccceEEEEeCCHHHHHH
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYV-PKDRVTNL-----------HQGYGFVEFRSEEDADY 81 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i-~~~~~~~~-----------~~g~afV~f~~~e~A~~ 81 (377)
+.+++.|+ +|+..++++-|..+++++|--.-+.. ..|. .++ ...||.|-+....+-++
T Consensus 156 h~nr~aY~-~lS~Rad~~lLe~fc~~~gy~~vvf~qT~de-~g~PiYHTNVmMaige~favic~~~i~~~~R 225 (318)
T COG4874 156 HPNRTAYA-GLSQRADRELLEVFCEQIGYSRVVFFQTRDE-SGSPIYHTNVMMAIGEHFAVICDEAIPEYER 225 (318)
T ss_pred ccchhhhh-hhhcccCHHHHHHHHHHcCCceeeeeeeccc-cCCcceehhHHHHhhhheeeeeccccccHHH
Confidence 46778888 48888998888888888885333333 1121 121 23577777766555443
No 239
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=69.34 E-value=85 Score=29.91 Aligned_cols=14 Identities=0% Similarity=-0.083 Sum_probs=6.5
Q ss_pred CCHHHHHHHHHhcC
Q 017119 36 VTEELLWELFVQAG 49 (377)
Q Consensus 36 ~te~~L~~~f~~~G 49 (377)
.+.++|.+.+++.+
T Consensus 47 KDp~qi~~~m~kld 60 (487)
T KOG4672|consen 47 KDPDQITSKMEKLD 60 (487)
T ss_pred CCHHHHHHHHHhhc
Confidence 44444444444444
No 240
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=68.80 E-value=13 Score=25.90 Aligned_cols=62 Identities=23% Similarity=0.332 Sum_probs=42.8
Q ss_pred HHHHHHHHhcC-CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCc
Q 017119 39 ELLWELFVQAG-PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ 103 (377)
Q Consensus 39 ~~L~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 103 (377)
++|++.|...| .|.++.-+..+.+......-||+.+...+..+ .++=..+.+..|.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 57888888888 47777777776566666778888877655333 3445567778888876543
No 241
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=68.55 E-value=11 Score=35.14 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=39.8
Q ss_pred EEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhh
Q 017119 69 GFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134 (377)
Q Consensus 69 afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~ 134 (377)
|||+|++.++|+.|++.+....- +.++++.+-+.+ .|+-.||.....+..++.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP~-------DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEPD-------DIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCcc-------cccccccCCChHHHHHHHHHHH
Confidence 79999999999999996555433 444665554443 4777888777767666665554
No 242
>PRK11901 hypothetical protein; Reviewed
Probab=67.81 E-value=22 Score=32.74 Aligned_cols=65 Identities=15% Similarity=0.116 Sum_probs=41.9
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEE--EeCCHHHHHHHHHHhcC
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFV--EFRSEEDADYAIKVLNM 88 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV--~f~~~e~A~~A~~~l~~ 88 (377)
......++|-|..+ .+++.|..|.++++ +.++++......|+. =|..| .|.+.++|+.|++.|-.
T Consensus 240 s~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 240 SAPASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred cCCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 33456667776665 56888898888876 455666554433321 12222 68899999999997753
No 243
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=67.79 E-value=11 Score=26.23 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=43.1
Q ss_pred HHHHHHHHhcC-CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCc
Q 017119 39 ELLWELFVQAG-PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ 103 (377)
Q Consensus 39 ~~L~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 103 (377)
.+|++.|.++| .+..+.-+..+.+......-||+.....+-.. .|+-..+.++.+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46888899988 47788877777666666778888776644333 3455567778888766543
No 244
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=67.71 E-value=13 Score=32.67 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=52.6
Q ss_pred CHHHHHHHHHhcCCeEEEEEeccCCCCCccceEE-------EEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCcc---
Q 017119 37 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGF-------VEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKK--- 106 (377)
Q Consensus 37 te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~af-------V~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~--- 106 (377)
.-++++++.++|..+.++.++.-++...+-|+++ -+=.+.|+-..|.+.|.... .+..|.|+..+....
T Consensus 120 ~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~Y 198 (237)
T PF00837_consen 120 KLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAY 198 (237)
T ss_pred HHHHHHHHHHHhhhhhheehhhHhhhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHh
Confidence 4456788888999888877776655444444333 22234555444545454333 455666654433211
Q ss_pred --------ccCCCCeEEEcCCC-CcCCHHHHHHHHhhc
Q 017119 107 --------SLDVGANLFIGNLD-PDVDEKLLYDTFSAF 135 (377)
Q Consensus 107 --------~~~~~~~l~V~nl~-~~~~~~~l~~~f~~~ 135 (377)
..++++.+|+|+.- +...-+||++.+++|
T Consensus 199 gA~PeRlyIi~~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 199 GALPERLYIIQDGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred CCCcceEEEEECCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 11234456666553 344556666666654
No 245
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=66.33 E-value=57 Score=25.83 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=48.0
Q ss_pred CCCeEEEcCCCcC---CCHHHHHHHHHhcCC-eEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 23 QDATAYVGNLDPQ---VTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 23 ~~~~l~v~nLp~~---~te~~L~~~f~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
++-.|.|+..... .+-.+|.+.+++-|- ++++.... +...|.|.+.|+..+|.+.|+...-++..|.+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~--------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAl 105 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEN--------DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQ 105 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeC--------CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4455666655333 566788889988774 44554422 25789999999999999988776555555555
Q ss_pred eecC
Q 017119 99 NKAS 102 (377)
Q Consensus 99 ~~~~ 102 (377)
+.+.
T Consensus 106 nl~p 109 (127)
T PRK10629 106 QDDN 109 (127)
T ss_pred ecCC
Confidence 4443
No 246
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=65.86 E-value=83 Score=26.71 Aligned_cols=106 Identities=14% Similarity=0.012 Sum_probs=52.8
Q ss_pred eEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecC
Q 017119 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 147 (377)
Q Consensus 68 ~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d 147 (377)
.+|..=.+++.++...+++....+.+..|.-..+...-.....-..+|||+= .+.++|.+.+-.+-.
T Consensus 60 ~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg---~~i~~ile~~~~~l~---------- 126 (187)
T COG2242 60 RVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG---GNIEEILEAAWERLK---------- 126 (187)
T ss_pred eEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC---CCHHHHHHHHHHHcC----------
Confidence 3444344555554444444444444444443333333223334568999875 334455444433210
Q ss_pred CCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeec
Q 017119 148 PDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192 (377)
Q Consensus 148 ~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~ 192 (377)
.-|--.+.+.+.|.+.+|++.|.+.-+. ..+++.+++.+
T Consensus 127 -----~ggrlV~naitlE~~~~a~~~~~~~g~~-ei~~v~is~~~ 165 (187)
T COG2242 127 -----PGGRLVANAITLETLAKALEALEQLGGR-EIVQVQISRGK 165 (187)
T ss_pred -----cCCeEEEEeecHHHHHHHHHHHHHcCCc-eEEEEEeecce
Confidence 1112345566677777777777665554 55566665544
No 247
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=65.60 E-value=23 Score=35.24 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=53.5
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCceeE--------------EeecCcCc------cccCCCCeEEEcCCCCcCCH
Q 017119 66 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR--------------VNKASQDK------KSLDVGANLFIGNLDPDVDE 125 (377)
Q Consensus 66 ~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~--------------v~~~~~~~------~~~~~~~~l~V~nl~~~~~~ 125 (377)
.--||+++++++..+...+.|+..-+.+-.|. ++|++... .+--+...+|+.+|+-.+-+
T Consensus 236 Qi~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~ 315 (621)
T COG0445 236 QIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPE 315 (621)
T ss_pred ccceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCH
Confidence 34699999999999988888876655543332 23333322 12233568999999999988
Q ss_pred HHHHHHHhhcCCeeecceeec
Q 017119 126 KLLYDTFSAFGVIVTNPKIMR 146 (377)
Q Consensus 126 ~~l~~~f~~~G~vv~~~~i~~ 146 (377)
+.-.++....-.. +.+++++
T Consensus 316 dVQ~~~irsipGl-Ena~i~r 335 (621)
T COG0445 316 DVQEQIIRSIPGL-ENAEILR 335 (621)
T ss_pred HHHHHHHHhCccc-ccceeec
Confidence 8777777665444 5566654
No 248
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=65.59 E-value=18 Score=33.42 Aligned_cols=141 Identities=14% Similarity=0.158 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
...++|+|.+-.|---+.|++..++-|--....+.++..||. ++-+...+..+-...+..-+..+.+ +.+
T Consensus 80 p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGt---Cavli~~~nRSL~anLgAAn~f~~d-------hl~ 149 (343)
T KOG2854|consen 80 PGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGT---CAVLITGDNRSLCANLGAANCFKVD-------HLD 149 (343)
T ss_pred CCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCce---EEEEEeCCCcchhhccchhhccCHH-------Hhc
Confidence 448999999999988889999888888655555555443332 3334444443333333222222222 110
Q ss_pred cCc--cccCCCCeEEEcCCCCcCCHHHHHHHHhhc---CCe----eecc---eeecCCCCCCCcceEEEEeCCHHHHHHH
Q 017119 103 QDK--KSLDVGANLFIGNLDPDVDEKLLYDTFSAF---GVI----VTNP---KIMRDPDTGNSRGFGFISYDSFEASDAA 170 (377)
Q Consensus 103 ~~~--~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~---G~v----v~~~---~i~~d~~~~~~kg~afV~f~~~~~A~~a 170 (377)
..+ ...+....+||.++-..++-+.|+.+-+.. -.+ ++.. ++.++ .-.+.-.|+.|.|.++++|+..
T Consensus 150 ~~~~~~lveka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~-~l~~v~~y~DiifgNe~EA~af 228 (343)
T KOG2854|consen 150 KEENWALVEKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKD-ALDKVLPYADIIFGNEDEAAAF 228 (343)
T ss_pred chhhhhhhhheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHH-HHHhhcCcceEEEcCHHHHHHH
Confidence 000 111222346666666555544443332221 110 0000 00111 1122344789999999999887
Q ss_pred HHHH
Q 017119 171 IEAM 174 (377)
Q Consensus 171 ~~~l 174 (377)
.+.-
T Consensus 229 ~~~~ 232 (343)
T KOG2854|consen 229 ARAH 232 (343)
T ss_pred HHhh
Confidence 7653
No 249
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=64.98 E-value=32 Score=24.14 Aligned_cols=39 Identities=26% Similarity=0.301 Sum_probs=28.1
Q ss_pred HHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc
Q 017119 43 ELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 43 ~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~ 90 (377)
..+++||.|.-+.- ...|+ |-|.|.++++..++.+....
T Consensus 15 r~L~kfG~i~Y~Sk--------k~kYv-vlYvn~~~~e~~~~kl~~l~ 53 (71)
T PF09902_consen 15 RQLRKFGDIHYVSK--------KMKYV-VLYVNEEDVEEIIEKLKKLK 53 (71)
T ss_pred HhHhhcccEEEEEC--------CccEE-EEEECHHHHHHHHHHHhcCC
Confidence 45778998876621 22344 56889999999999887654
No 250
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=64.83 E-value=30 Score=23.00 Aligned_cols=53 Identities=17% Similarity=0.031 Sum_probs=40.1
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCH----HHHHHHHH
Q 017119 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE----EDADYAIK 84 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~----e~A~~A~~ 84 (377)
|+.|.|+....-...|++.+.+.-.|.++.+-. ..+.+-|+|... ++..++++
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~------~~~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDL------ETKTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEET------TTTEEEEEESTTTSCHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEEC------CCCEEEEEEecCCCCHHHHHHHHH
Confidence 678889988888899999999998899988833 335677888755 44455554
No 251
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=64.64 E-value=6.9 Score=32.66 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=48.2
Q ss_pred eEEEcCCCCcC-----CHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCe-eeEE
Q 017119 113 NLFIGNLDPDV-----DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNR-QITV 186 (377)
Q Consensus 113 ~l~V~nl~~~~-----~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~-~l~v 186 (377)
++++.++...+ .......+|.+|-+.+ ...+++ +.++..|.|.+.+.|..|.-+++...|.|+ .++.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~-~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDA-TFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcch-HHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 45555555432 2234455666665542 223332 344567999999999999999999999998 7777
Q ss_pred eeeeecC
Q 017119 187 SYAYKKD 193 (377)
Q Consensus 187 ~~a~~~~ 193 (377)
-|+....
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 7775543
No 252
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=62.64 E-value=20 Score=33.90 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=30.4
Q ss_pred cccCCCCeEEEcCCCcC-CCHHHHHHHHHhc----CCeEEEEEecc
Q 017119 19 AERNQDATAYVGNLDPQ-VTEELLWELFVQA----GPVVNVYVPKD 59 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~-~te~~L~~~f~~~----G~i~~v~i~~~ 59 (377)
++-+...+|-|-|+.|+ +...+|..+|+.| |.|..|.|...
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 33456778888899876 6777888888876 56888887554
No 253
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=60.75 E-value=95 Score=29.58 Aligned_cols=23 Identities=4% Similarity=0.317 Sum_probs=12.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCccc
Q 017119 69 GFVEFRSEEDADYAIKVLNMIKL 91 (377)
Q Consensus 69 afV~f~~~e~A~~A~~~l~~~~~ 91 (377)
+.+.++|.+....-++.|....+
T Consensus 42 a~lk~KDp~qi~~~m~kldem~~ 64 (487)
T KOG4672|consen 42 AVLKYKDPDQITSKMEKLDEMEY 64 (487)
T ss_pred hhhccCCHHHHHHHHHhhccccc
Confidence 34455566655555555554433
No 254
>PRK11901 hypothetical protein; Reviewed
Probab=60.67 E-value=15 Score=33.75 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=39.3
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceE--EEEeCCHHHHHHHHHHHcCce
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG--FISYDSFEASDAAIEAMNGQY 178 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~a--fV~f~~~~~A~~a~~~l~~~~ 178 (377)
++|-|.. ..+++.|.++..+++. ..+++++...+|+.+ |. |=.|.+.++|+.|++.|....
T Consensus 246 YTLQL~A---as~~~~L~~f~~~~~L--~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 246 YTLQLSS---ASRSDTLNAYAKKQNL--SHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred eEEEeec---CCCHHHHHHHHHHcCc--CceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHHH
Confidence 3444444 3457788888877763 445666655555543 32 236889999999999886543
No 255
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=60.10 E-value=30 Score=25.20 Aligned_cols=58 Identities=9% Similarity=0.100 Sum_probs=40.8
Q ss_pred EEEcCCCCcCCHHHHHHHHhh-cCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHH
Q 017119 114 LFIGNLDPDVDEKLLYDTFSA-FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAM 174 (377)
Q Consensus 114 l~V~nl~~~~~~~~l~~~f~~-~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l 174 (377)
-|+-..+.+.+..+|+++++. ||.-|..++.+.-. ...--|||.+...++|.+....+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 444456678889999999987 45546666665543 22234999999999998876654
No 256
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=60.04 E-value=68 Score=29.75 Aligned_cols=135 Identities=18% Similarity=0.175 Sum_probs=77.7
Q ss_pred HHHHHH-HHhcCCeEEEEEeccCCCCCccceEEEEeC-CHHHHHHHHHHhcCcccCCceeEEeecC--cCccccCCCCeE
Q 017119 39 ELLWEL-FVQAGPVVNVYVPKDRVTNLHQGYGFVEFR-SEEDADYAIKVLNMIKLYGKPIRVNKAS--QDKKSLDVGANL 114 (377)
Q Consensus 39 ~~L~~~-f~~~G~i~~v~i~~~~~~~~~~g~afV~f~-~~e~A~~A~~~l~~~~~~g~~i~v~~~~--~~~~~~~~~~~l 114 (377)
+-|+++ +..|+.+.-|.+-.-..++.+|.|-|-+-. .+--|+.|-+.+|. .+.+..+.-.+.+ +...+.-....|
T Consensus 54 ElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~-Rvp~~~v~~h~~kIqd~~~~FYk~F~~ 132 (422)
T KOG2015|consen 54 ELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNR-RVPGCVVVPHRQKIQDKPISFYKRFDL 132 (422)
T ss_pred HHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHh-hCCCcEEeeeecchhcCCHHHHhhhce
Confidence 445554 456776666665444456777777765433 22346666665554 3444443333222 222222334579
Q ss_pred EEcCCCCcCCHHHHHHHH---hhcCCe-eecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHH
Q 017119 115 FIGNLDPDVDEKLLYDTF---SAFGVI-VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAM 174 (377)
Q Consensus 115 ~V~nl~~~~~~~~l~~~f---~~~G~v-v~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l 174 (377)
.|++|+.-.-...|...| ..+|.. +.++..+.|--+...||.+-|.|-...++.++.-.|
T Consensus 133 iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~TaCieCtldl 196 (422)
T KOG2015|consen 133 IICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGITACIECTLDL 196 (422)
T ss_pred EEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCccHHHHhHHhh
Confidence 999998644333333222 123654 344456677777788999999998887777776555
No 257
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=58.57 E-value=12 Score=31.11 Aligned_cols=58 Identities=24% Similarity=0.200 Sum_probs=39.0
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhc-CCeEEEEEeccCCC-CCccceEEEEeCCHHHHHHHHH
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQA-GPVVNVYVPKDRVT-NLHQGYGFVEFRSEEDADYAIK 84 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~-G~i~~v~i~~~~~~-~~~~g~afV~f~~~e~A~~A~~ 84 (377)
...+++|.. .|+++|.++..-- |.+.+|.+.+.... ...+|-.||+|.+.+.|.++++
T Consensus 109 ~~~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 109 IKERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred HHHhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 345666665 5566665554322 67888777544321 2568899999999999999877
No 258
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=58.23 E-value=37 Score=24.68 Aligned_cols=57 Identities=14% Similarity=0.028 Sum_probs=40.9
Q ss_pred eEEEcCCCcCCCHHHHHHHHHh-cC-CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHH
Q 017119 26 TAYVGNLDPQVTEELLWELFVQ-AG-PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKV 85 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~ 85 (377)
..|+-.++.+.+..+|++.+++ || .|.+|..+.-. ....=|||++...++|.+....
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 3444457889999999999997 45 46666665543 1223599999999988877553
No 259
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=58.17 E-value=1.3 Score=43.20 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=52.2
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY 92 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~ 92 (377)
...++||++|+..+++-.+|..+++.+--+..+.+-.+....+...+++|+|.-.-....|+.+|+++.+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 45678999999999999999999998866666665444333445667889998666666666666665444
No 260
>PRK02302 hypothetical protein; Provisional
Probab=55.68 E-value=45 Score=24.53 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=34.4
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~ 90 (377)
..-.||+..+ .-...+++||.|..+.- ...|+ |-|.+.++++..++.|....
T Consensus 8 ~glIVyl~~~-------k~~r~LrkfG~I~Y~Sk--------k~kYv-vlYvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 8 IGLIVYLYYN-------RDARKLSKYGDIVYHSK--------RSRYL-VLYVNKEDVEQKLEELSKLK 59 (89)
T ss_pred eEEEEEEeec-------HhHHHHhhcCcEEEEec--------cccEE-EEEECHHHHHHHHHHHhcCC
Confidence 3445666655 22344678999877621 22344 67899999999999887654
No 261
>PRK02886 hypothetical protein; Provisional
Probab=55.25 E-value=47 Score=24.27 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=34.2
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~ 90 (377)
..-.||+.++ .-...+++||.|..+.- ...|+ |.|.|.++++..++.|....
T Consensus 6 ~glIVyl~~~-------k~~r~LrkyG~I~Y~Sk--------r~kYv-vlYvn~~~~e~~~~kl~~l~ 57 (87)
T PRK02886 6 QGIIVWLHSL-------KQAKQLRKFGNVHYVSK--------RLKYA-VLYCDMEQVEDIMNKLSSLP 57 (87)
T ss_pred eEEEEEEeec-------HhHHHHhhcCcEEEEec--------cccEE-EEEECHHHHHHHHHHHhcCC
Confidence 3445666655 22345678999877621 22344 67889999999999887654
No 262
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=54.98 E-value=44 Score=23.88 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=40.6
Q ss_pred eEEEcCCCCcCCHHHHHHHHhh-cCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHH
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSA-FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAM 174 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~-~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l 174 (377)
+-|+-.++.+.+..+|+++++. |+.-+..++.+.-. ...--|||.+...++|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHhh
Confidence 3455567778899999999987 45446666555443 12234999999988888776543
No 263
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=54.60 E-value=2.1 Score=41.80 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=51.3
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g 181 (377)
.++|++.|+...++.++|..+|..+-..+ .+.+..+........+.+|.|+...+...|+.+||+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~l-rfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFL-RFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchhe-eeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 46799999999999999999999876542 22222222233455578999998888888888888876643
No 264
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=54.58 E-value=88 Score=28.05 Aligned_cols=60 Identities=10% Similarity=-0.011 Sum_probs=37.7
Q ss_pred HHHHHHhcCcccCCceeEEeecCcCc-------cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCee
Q 017119 80 DYAIKVLNMIKLYGKPIRVNKASQDK-------KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139 (377)
Q Consensus 80 ~~A~~~l~~~~~~g~~i~v~~~~~~~-------~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv 139 (377)
+.+...|+..+|++..+-++..-... .+...-.+|||.|--+.++-||+..+-.+--.+|
T Consensus 201 k~i~~ILheykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrlAr~PnsvV 267 (364)
T KOG1486|consen 201 KLIYTILHEYKIHNAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRLARQPNSVV 267 (364)
T ss_pred HHHHHHHHHHeeccceEEEecCCChHHHHHHHhccceEEEEEEEeeccceecHHHHHHHhcCCCcEE
Confidence 34445567777887777665432221 1223345788888888888888887776655443
No 265
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.96 E-value=2.3 Score=40.23 Aligned_cols=79 Identities=6% Similarity=-0.117 Sum_probs=58.3
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeec
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~ 192 (377)
+.++..+.-.++++++.-+|+.||.| +.+.+-+..+.+..+-.+||.... .++..+|..+....+.|..+++.++...
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i-~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~s 82 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSII-SMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPSS 82 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcce-eeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCchh
Confidence 34566777888899999999999987 555555554555566667877654 5677888888888888888888877654
Q ss_pred C
Q 017119 193 D 193 (377)
Q Consensus 193 ~ 193 (377)
.
T Consensus 83 ~ 83 (572)
T KOG4365|consen 83 S 83 (572)
T ss_pred h
Confidence 3
No 266
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.95 E-value=2.7 Score=39.77 Aligned_cols=76 Identities=5% Similarity=-0.128 Sum_probs=57.0
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
...|+..|+..+++.++.-+|..||.|..+.+......+...-.+||+..+ +++..||..+.-..+++..+++..+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 455778899999999999999999999998887766666666778887665 3566677666666666666666544
No 267
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=52.76 E-value=15 Score=28.52 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=23.4
Q ss_pred CHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHH
Q 017119 124 DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEA 166 (377)
Q Consensus 124 ~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~ 166 (377)
+.++|++.|..|..+ .++.+.+.. .+.|+++|+|...-+
T Consensus 30 ~~~~l~~~l~~f~p~--kv~~l~~~~--gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 30 SNEELLDKLAEFNPL--KVKPLYGKQ--GHTGFAIVEFNKDWS 68 (116)
T ss_dssp -SHHHHHHHHH---S--EEEEEEETT--EEEEEEEEE--SSHH
T ss_pred CHHHHHHHHHhcCCc--eeEECcCCC--CCcEEEEEEECCChH
Confidence 448899999998876 244554433 678999999987443
No 268
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=52.65 E-value=77 Score=22.08 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=39.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCee
Q 017119 67 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139 (377)
Q Consensus 67 g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv 139 (377)
.+.+|.|.+..+|.+|-+.|+...+..+-+-+ ..+...+|.+-+.-- .-..+.+.+++++.+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~------P~~i~~~CG~al~~~--~~d~~~i~~~l~~~~i~~ 66 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLIPT------PREISAGCGLALRFE--PEDLEKIKEILEENGIEY 66 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEeCC------ChhccCCCCEEEEEC--hhhHHHHHHHHHHCCCCe
Confidence 36899999999999999988766554443322 112233343333211 134567777887776543
No 269
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=51.57 E-value=7 Score=28.70 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.3
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHH
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELF 45 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f 45 (377)
..-..++|.|.||+..+++++|++.+
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeE
Confidence 34578899999999999999998764
No 270
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=50.76 E-value=15 Score=32.12 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=31.4
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVY 55 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~ 55 (377)
....+++++|+-||+..++++.|.++..++|.+..+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 4567889999999999999999999999998654443
No 271
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=50.25 E-value=28 Score=23.64 Aligned_cols=13 Identities=31% Similarity=0.416 Sum_probs=12.1
Q ss_pred HHHHHHHhhcCCe
Q 017119 126 KLLYDTFSAFGVI 138 (377)
Q Consensus 126 ~~l~~~f~~~G~v 138 (377)
++|++.|+..|.|
T Consensus 9 ~~iR~~fs~lG~I 21 (62)
T PF15513_consen 9 AEIRQFFSQLGEI 21 (62)
T ss_pred HHHHHHHHhcCcE
Confidence 6899999999998
No 272
>PF15063 TC1: Thyroid cancer protein 1
Probab=50.11 E-value=7 Score=27.43 Aligned_cols=28 Identities=18% Similarity=0.082 Sum_probs=23.5
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCe
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVI 138 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~v 138 (377)
.++--+.||-.+++.+.|..+|..-|+.
T Consensus 25 ~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 25 SRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 3445577888899999999999999986
No 273
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=49.75 E-value=99 Score=31.76 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=39.5
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHh---cCCeEEEEEeccCCCCCccceEE-EEeCCHHHHHHHHHHhc
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQ---AGPVVNVYVPKDRVTNLHQGYGF-VEFRSEEDADYAIKVLN 87 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~---~G~i~~v~i~~~~~~~~~~g~af-V~f~~~e~A~~A~~~l~ 87 (377)
..++|.|..||+.++.+.|.+...+ -|.+. |.-++|.. .. +.-| |++.....++..++.|-
T Consensus 219 ~~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s-~~--~v~i~i~l~~~~~~~~~~~~Ly 283 (635)
T PRK09631 219 DEKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYT-AE--NVEIEIKLPRGVYASEVIEALY 283 (635)
T ss_pred cCCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCC-CC--cEEEEEEECCCCCHHHHHHHHH
Confidence 3478999999999999988776543 35554 44455542 22 3333 56666666666666554
No 274
>TIGR02515 IV_pilus_PilQ type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure.
Probab=49.03 E-value=73 Score=30.89 Aligned_cols=63 Identities=11% Similarity=0.031 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeC--CHHHHHHHHHHhcCcc--cCCceeEEeec
Q 017119 36 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR--SEEDADYAIKVLNMIK--LYGKPIRVNKA 101 (377)
Q Consensus 36 ~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~--~~e~A~~A~~~l~~~~--~~g~~i~v~~~ 101 (377)
+.+.+|+++|+.+.....+.++.+..- .|..-+.|. +.++|-.++...+++. ..|..++|...
T Consensus 8 ~~~~~l~dvL~~la~~~g~NiVi~~~V---~g~Vtl~~~~v~~~~al~~Il~~~gl~~~~~gnvi~V~~~ 74 (418)
T TIGR02515 8 FQDIPVRTVLQVIAEFTNLNIVVSDSV---QGNITLRLKNVPWDQALDIILKSKGLDKRRDGNIIYIAPL 74 (418)
T ss_pred EeCCCHHHHHHHHHHHhCCeEEECCCC---cceEEEEEeCCCHHHHHHHHHHhCCCCEEEECCEEEEecH
Confidence 334566776666665556666555421 233444554 4456666666666643 35777777643
No 275
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=48.89 E-value=60 Score=25.10 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=27.7
Q ss_pred cCCCHHHHHHHHHhc-CC----eEEEEEeccCCCCCccceEEEEeCCHHHHHHH
Q 017119 34 PQVTEELLWELFVQA-GP----VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYA 82 (377)
Q Consensus 34 ~~~te~~L~~~f~~~-G~----i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A 82 (377)
..++.+||++-+.+. -. |.-..+......+.+.|||.| |.+.|.|.+.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 357888888877653 22 211222222334677888865 7777766543
No 276
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=47.26 E-value=1.3e+02 Score=28.13 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=55.2
Q ss_pred CCcCCCHHHHHH----HHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC--CceeEEeecCcCc
Q 017119 32 LDPQVTEELLWE----LFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY--GKPIRVNKASQDK 105 (377)
Q Consensus 32 Lp~~~te~~L~~----~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~--g~~i~v~~~~~~~ 105 (377)
.+++-+-+-++. ++++||.-.++++.+.-.. .+|-+-|.|...-. +.+....+. |+..+
T Consensus 120 ~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~y--P~GgGeV~~~v~p~-----~~l~~i~l~~~g~i~~-------- 184 (326)
T cd00874 120 VPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGFY--PRGGGEVVLTVEPS-----KLLPPLLLEERGEIEK-------- 184 (326)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCcC--CCCCEEEEEEEecc-----cCCCcceeecCCCeEE--------
Confidence 444445555544 4578897667777655433 34445555543211 001111111 11111
Q ss_pred cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCC-eeecceeecCCCCCCCcceEEEEeC
Q 017119 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGV-IVTNPKIMRDPDTGNSRGFGFISYD 162 (377)
Q Consensus 106 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~-vv~~~~i~~d~~~~~~kg~afV~f~ 162 (377)
.....|+.+++..+.+.++..+-+.+-. ...++.+..+...+.+.||+++.+.
T Consensus 185 ----irg~~~~~~l~~~va~r~~~~a~~~L~~~~~~dv~i~~~~~~~~s~G~~i~L~a 238 (326)
T cd00874 185 ----IRGISHAANLPPHVAERQAEAAAALLRKALGLQIEIEPEDQSALGPGSGIVLWA 238 (326)
T ss_pred ----EEEEEEEccCCHHHHHHHHHHHHHHHhhccCCCeEEEEEecCCCCCCEEEEEEE
Confidence 1125678888888776665444333221 1123455555445778888765543
No 277
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=46.81 E-value=98 Score=30.33 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=37.4
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHh---cCCeEEEEEeccCCCCCccceEE-EEeCCHHHHHHHHHHh
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQ---AGPVVNVYVPKDRVTNLHQGYGF-VEFRSEEDADYAIKVL 86 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~---~G~i~~v~i~~~~~~~~~~g~af-V~f~~~e~A~~A~~~l 86 (377)
.++|.|..||+.+..+++.+.+.+ -+.+..|.-++|..+. .+.-| |++.....++..++.|
T Consensus 225 ~~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~--~~vrivI~lk~~~~~~~~~~~L 289 (445)
T cd00187 225 RNTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDR--EGIRFVIELKRGAMAEVVLNGL 289 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCC--CceEEEEEECCCccHHHHHHHH
Confidence 478999999999999988776653 2444344444444322 24555 4566655565555544
No 278
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=46.74 E-value=28 Score=24.38 Aligned_cols=26 Identities=12% Similarity=0.108 Sum_probs=21.8
Q ss_pred ceEEEEeCCHHHHHHHHHHHcCceec
Q 017119 155 GFGFISYDSFEASDAAIEAMNGQYLC 180 (377)
Q Consensus 155 g~afV~f~~~~~A~~a~~~l~~~~~~ 180 (377)
.+++|.|.+..+|.+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 36899999999999999998876553
No 279
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=46.36 E-value=99 Score=21.53 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=30.5
Q ss_pred CCHHHHHHHHhhcCCeeecceeecCCCCCCCcceE-EEEeC-CHHHHHHHHHHHcC
Q 017119 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG-FISYD-SFEASDAAIEAMNG 176 (377)
Q Consensus 123 ~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~a-fV~f~-~~~~A~~a~~~l~~ 176 (377)
-.-.++.+.|..+|.-+. +|......+....|- ||+++ +.++.++|++.|..
T Consensus 12 G~L~~vL~~f~~~~iNlt--~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 12 GALARALKLFEEFGVNLT--HIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred cHHHHHHHHHHHCCCcEE--EEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 345678888888885533 443333333333443 57766 45556777777754
No 280
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=46.14 E-value=71 Score=24.20 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHH
Q 017119 39 ELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84 (377)
Q Consensus 39 ~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~ 84 (377)
.+|..+++++| |.+..|..|.. .+.-||++++.|.++.-.++.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~--~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEE--ENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCC--cccEEEEEEEcChHHHHHHHh
Confidence 35677888887 55555555542 244699999997666555554
No 281
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=45.23 E-value=44 Score=33.09 Aligned_cols=108 Identities=11% Similarity=0.169 Sum_probs=58.8
Q ss_pred EEEEeCCHHHHHHHHHHhcCcccCCce---eEEeecCcCc---cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecc
Q 017119 69 GFVEFRSEEDADYAIKVLNMIKLYGKP---IRVNKASQDK---KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 142 (377)
Q Consensus 69 afV~f~~~e~A~~A~~~l~~~~~~g~~---i~v~~~~~~~---~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~ 142 (377)
-||+-.|..+...|++........||- +.|...+-.+ -....++.|..-++++..|+..+...-..|- .+.
T Consensus 565 ~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~hhyGR~ViM~gIP~qytesriLkarle~L---rd~ 641 (755)
T KOG1131|consen 565 LFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFDHHYGREVIMEGIPYQYTESRILKARLEYL---RDQ 641 (755)
T ss_pred EEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccccccCceEEEEeccchhhHHHHHHHHHHHH---HHH
Confidence 455555555555565544333333322 2222222111 2233456788889999998876544332221 111
Q ss_pred eeecCCCCCCCcceEEEEeCCHHHHHHHH-HHHcCceecCeeeEEe
Q 017119 143 KIMRDPDTGNSRGFGFISYDSFEASDAAI-EAMNGQYLCNRQITVS 187 (377)
Q Consensus 143 ~i~~d~~~~~~kg~afV~f~~~~~A~~a~-~~l~~~~~~g~~l~v~ 187 (377)
. +-+..-|++|+--..|..++ ..|.++.-.|..|...
T Consensus 642 ~--------~irE~dflTFDAmRhaAQC~GrvLr~K~dYg~mI~aD 679 (755)
T KOG1131|consen 642 F--------QIRENDFLTFDAMRHAAQCLGRVLRGKTDYGLMIFAD 679 (755)
T ss_pred h--------cccccceechHhHHHHHHHHHHHHhccccceeeEeee
Confidence 1 11224689999888888888 6677766666555444
No 282
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=44.19 E-value=34 Score=24.00 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=33.7
Q ss_pred cCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEe-CCHHHHHHHHHHHcCc
Q 017119 122 DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY-DSFEASDAAIEAMNGQ 177 (377)
Q Consensus 122 ~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f-~~~~~A~~a~~~l~~~ 177 (377)
...+..|.++..+||..++.+.=-.+.-.+..-|.-+|++ .+.++.++|++.|..+
T Consensus 13 ~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~ 69 (76)
T PF09383_consen 13 SAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQ 69 (76)
T ss_dssp SSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHT
T ss_pred CcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHC
Confidence 4556678888888886543222222223455677778888 4556678888887654
No 283
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=43.99 E-value=2e+02 Score=28.67 Aligned_cols=96 Identities=10% Similarity=0.052 Sum_probs=51.2
Q ss_pred ccceEEEEeC--CHHHHHHHHHHhcCcccCCcee--------EEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhh
Q 017119 65 HQGYGFVEFR--SEEDADYAIKVLNMIKLYGKPI--------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134 (377)
Q Consensus 65 ~~g~afV~f~--~~e~A~~A~~~l~~~~~~g~~i--------~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~ 134 (377)
.....||.++ +.++.+..++.|....+.-..+ .+++..........+..||--+++.. ---|++++..
T Consensus 362 ~~a~v~vgie~~~~~~~~~l~~~L~~~Gy~~~dls~ne~~k~h~r~~~g~~~~~~~~e~~~~~~fper--pgaL~~Fl~~ 439 (499)
T TIGR01124 362 KDAHIFVGVQLSNPQERQEILARLNDGGYSVVDLTDDELAKLHVRYMVGGRPPHVENERLYSFEFPER--PGALLRFLNT 439 (499)
T ss_pred CeEEEEEEEEeCCHHHHHHHHHHHHHcCCCeEECCCCHHHHHHHHhccCCCCCCCCCceEEEEeCCCC--ccHHHHHHHh
Confidence 3444555444 4567777777665432221111 11121122222223345666555543 2457777777
Q ss_pred cCCeeecceeecCCCCCCCcceEEEEeCC
Q 017119 135 FGVIVTNPKIMRDPDTGNSRGFGFISYDS 163 (377)
Q Consensus 135 ~G~vv~~~~i~~d~~~~~~kg~afV~f~~ 163 (377)
.|.- .++.++..++.|...|-++|-+..
T Consensus 440 l~~~-~~It~f~Yr~~~~~~g~~l~gi~~ 467 (499)
T TIGR01124 440 LQGY-WNISLFHYRNHGADYGRVLAGFQV 467 (499)
T ss_pred cCCC-CceeeEEEecCCcccCCEEEEEec
Confidence 7765 345556667788888888877654
No 284
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=43.81 E-value=79 Score=22.29 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCCeEEEEEeccCCCCCc-cceEEEEeCCHHHHHHHHHHhc
Q 017119 39 ELLWELFVQAGPVVNVYVPKDRVTNLH-QGYGFVEFRSEEDADYAIKVLN 87 (377)
Q Consensus 39 ~~L~~~f~~~G~i~~v~i~~~~~~~~~-~g~afV~f~~~e~A~~A~~~l~ 87 (377)
.+|++.++++| +...++ +|.. -++.|+.+.+.+.++++.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~-----sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKM-----SGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEE-----ETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceec-----CCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 35677778888 555555 2321 3577888889999998888764
No 285
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=43.42 E-value=58 Score=26.36 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=37.3
Q ss_pred eEEEcCCCCcCCHHHHHHHHhh-cCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHH
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSA-FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~-~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~ 172 (377)
+-|+-.++...+..+|+++++. |+.-|..|..+.... |.. -|||.+....+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~K--KA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GLK--KAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-Cce--EEEEEECCCCcHHHHHH
Confidence 4555567778899999999987 554455555544322 222 38999988777655444
No 286
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=43.39 E-value=1.1e+02 Score=22.93 Aligned_cols=57 Identities=21% Similarity=0.385 Sum_probs=32.7
Q ss_pred eEEEcCCCcCCCHHHHHHHHHh-------cC-CeEEEEEeccC-----CCCCccc-eEEEEeCCHHHHHHHHH
Q 017119 26 TAYVGNLDPQVTEELLWELFVQ-------AG-PVVNVYVPKDR-----VTNLHQG-YGFVEFRSEEDADYAIK 84 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~-------~G-~i~~v~i~~~~-----~~~~~~g-~afV~f~~~e~A~~A~~ 84 (377)
++|| |..+++++++.++.++ .| .|.++.-.-.+ ..+..+| |.++.|....++.+.++
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 5666 5667778877665554 33 55554431111 1133445 57788887777777766
No 287
>PRK10905 cell division protein DamX; Validated
Probab=42.85 E-value=58 Score=30.04 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=39.1
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEE---EeCCHHHHHHHHHHhcC
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFV---EFRSEEDADYAIKVLNM 88 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV---~f~~~e~A~~A~~~l~~ 88 (377)
...++|-|+.+ .+++.|++|.+++|. ....+.....+|. -+..| .|.+.++|++|++.|-.
T Consensus 245 a~~YTLQL~A~---Ss~~~l~~fakKlgL-~~y~vy~TtRnGk--pWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 245 SSHYTLQLSSS---SNYDNLNGWAKKENL-KNYVVYETTRNGQ--PWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CCceEEEEEec---CCHHHHHHHHHHcCC-CceEEEEeccCCc--eEEEEEecCCCCHHHHHHHHHHCCH
Confidence 45567777666 667888888888863 4444444332332 12222 68899999999997743
No 288
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=42.82 E-value=79 Score=22.48 Aligned_cols=59 Identities=8% Similarity=0.014 Sum_probs=36.6
Q ss_pred EEEcCCCCcCCHHHHHHHHhhcCCe------eecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHH
Q 017119 114 LFIGNLDPDVDEKLLYDTFSAFGVI------VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAM 174 (377)
Q Consensus 114 l~V~nl~~~~~~~~l~~~f~~~G~v------v~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l 174 (377)
|...+|+..+|.++|.++..+.-.+ |..++-..+. ...|-||+.+=.|.+...++.+.-
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~--d~~k~~Cly~Ap~~eaV~~~~~~a 67 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSE--DDGKIFCLYEAPDEEAVREHARRA 67 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEec--CCCeEEEEEECCCHHHHHHHHHHc
Confidence 4557788878889887766443222 1222222222 234678888888888888777653
No 289
>PRK10905 cell division protein DamX; Validated
Probab=42.34 E-value=40 Score=31.06 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=37.3
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCc-ceEEEEeCCHHHHHHHHHHHcCc
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR-GFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~k-g~afV~f~~~~~A~~a~~~l~~~ 177 (377)
++|-|+.+. +++.|+++..++|. ....+++...+|+.+ -.-+=.|.+.++|++|++.|-..
T Consensus 248 YTLQL~A~S---s~~~l~~fakKlgL--~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 248 YTLQLSSSS---NYDNLNGWAKKENL--KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred eEEEEEecC---CHHHHHHHHHHcCC--CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 345555444 45778888777763 333455444444432 11233688999999999988654
No 290
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=41.88 E-value=79 Score=23.38 Aligned_cols=55 Identities=16% Similarity=0.328 Sum_probs=36.2
Q ss_pred CCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 119 l~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
+...++...|..-|-.-|.--.-..+.+| .-+.+|.|+|.+.+.+..|.+.|...
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD----~W~pm~vv~f~~~~~g~~~yq~Lrel 74 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRKD----YWRPMCVVNFPNYEVGVSAYQKLREL 74 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhccc----cceEeEEEECCChHHHHHHHHHHHHH
Confidence 34455666666666555544222233333 46778999999999999999987643
No 291
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=41.80 E-value=64 Score=23.59 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=30.1
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeC
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 74 (377)
+-..-|||++++..+-|.-...+.+..+.- ++.++... ....||+|-++.
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~--~neqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSD--NNEQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEcc--CCCCCEEEEEeC
Confidence 345679999998877665555444444333 33333332 226788887763
No 292
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=41.69 E-value=1.2e+02 Score=29.85 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=38.6
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHh---cCCeEEEEEeccCCCCCccceEE-EEeCCHHHHHHHHHHh
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQ---AGPVVNVYVPKDRVTNLHQGYGF-VEFRSEEDADYAIKVL 86 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~---~G~i~~v~i~~~~~~~~~~g~af-V~f~~~e~A~~A~~~l 86 (377)
.++|.|+.||..+..+++.+.+.+ -+.|..+.-++|..+. ..+.-| |++.....++..++.|
T Consensus 232 ~~~ivItElP~~~~~~~~~e~I~~lv~~~ki~~i~~~~des~~-~~~vrivI~lk~~~~~~~~~~~L 297 (445)
T smart00434 232 RNTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHD-RTGVRIVIELKRGAMAEVVLNGL 297 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCCcceehhhccCC-CCceEEEEEECCCcCHHHHHHHH
Confidence 368999999999999988876554 3555555555554322 234444 4666555555555444
No 293
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=41.14 E-value=76 Score=27.98 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=37.6
Q ss_pred EEEcCCCc---CCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHH
Q 017119 27 AYVGNLDP---QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83 (377)
Q Consensus 27 l~v~nLp~---~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~ 83 (377)
|.|.++|. .+...+|++.|.+-|.-..+.++.|..-|..+..-|.+...+..++-.+
T Consensus 4 Vvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~lRg~L 63 (281)
T KOG3062|consen 4 VVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKALRGKL 63 (281)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHHHHHHHH
Confidence 56667875 4677899999999887557888777755555544455555554444444
No 294
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=41.13 E-value=88 Score=21.94 Aligned_cols=65 Identities=17% Similarity=0.079 Sum_probs=42.5
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
+|.|...+..-.-.+|...+...|.-+..+.+......+......-|+..+.++....++.|...
T Consensus 8 ~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i 72 (80)
T PF13291_consen 8 RLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQI 72 (80)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTS
T ss_pred EEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCC
Confidence 34444444444457888899888876666666554334455555668889999999999988753
No 295
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=40.96 E-value=2.4e+02 Score=24.46 Aligned_cols=139 Identities=17% Similarity=0.107 Sum_probs=74.2
Q ss_pred CHHHHHHHHHhcCC-eEEEEEecc---CCC------CCccceEEEEeCCHHHHHHHHHHhcC---cccCCceeEEe----
Q 017119 37 TEELLWELFVQAGP-VVNVYVPKD---RVT------NLHQGYGFVEFRSEEDADYAIKVLNM---IKLYGKPIRVN---- 99 (377)
Q Consensus 37 te~~L~~~f~~~G~-i~~v~i~~~---~~~------~~~~g~afV~f~~~e~A~~A~~~l~~---~~~~g~~i~v~---- 99 (377)
..+++.+.+++.|- +..+-++.- ... .....|..|.|.+...++..++.++. ..+.+..+.+-
T Consensus 12 ~~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~~~~~~~~~~avG~~T 91 (249)
T PRK05928 12 KAEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNAVEFLLSALKKKKLKWPKNKKYAAIGEKT 91 (249)
T ss_pred HHHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHHHHHHHHHHHhcCcCCCCCCEEEEECHHH
Confidence 44678888888873 333322221 111 12345888999999999998887651 11222222221
Q ss_pred ------------ecCcC-c---------cc-cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCC--CCC--
Q 017119 100 ------------KASQD-K---------KS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD--TGN-- 152 (377)
Q Consensus 100 ------------~~~~~-~---------~~-~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~--~~~-- 152 (377)
+.... . .. ....+.|+++.- ...++|.+.+.+.|..+..+.+.+... ...
T Consensus 92 a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~~~~~~~ili~~~~---~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~ 168 (249)
T PRK05928 92 ALALKKLGGKVVFVPEDGESSELLLELPELLLKGKRVLYLRGN---GGREVLGDTLEERGAEVDECEVYERVPPKLDGAE 168 (249)
T ss_pred HHHHHHcCCCccccCCCCcChHHHHhChhhhcCCCEEEEECCC---CCHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHH
Confidence 10000 0 00 112223444332 235678888888776544433332111 011
Q ss_pred ------CcceEEEEeCCHHHHHHHHHHHcCce
Q 017119 153 ------SRGFGFISYDSFEASDAAIEAMNGQY 178 (377)
Q Consensus 153 ------~kg~afV~f~~~~~A~~a~~~l~~~~ 178 (377)
...+-.|.|.+...++..++.+....
T Consensus 169 ~~~~~~~~~~d~ivftS~~~v~~~~~~~~~~~ 200 (249)
T PRK05928 169 LLARLQSGEVDAVIFTSPSTVRAFFSLAPELG 200 (249)
T ss_pred HHHHHHhCCCCEEEECCHHHHHHHHHHhcccc
Confidence 13578899999999999988776443
No 296
>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]
Probab=40.13 E-value=56 Score=29.36 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 017119 36 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNM 88 (377)
Q Consensus 36 ~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~ 88 (377)
+.+++|.++++-.. +..++.| -|||+|...+++.+.++.+.+
T Consensus 177 ik~~di~KiLe~p~---nglVVvD--------EAYidFsg~~S~~~lV~kYpN 218 (375)
T KOG0633|consen 177 IKEDDILKILEMPD---NGLVVVD--------EAYIDFSGVESRMKLVKKYPN 218 (375)
T ss_pred ccHHHHHHHHhCCC---CcEEEEe--------eeeEeeccccccchHhHhCCc
Confidence 67778888887663 2222233 489999998888888876654
No 297
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=39.63 E-value=56 Score=23.91 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=28.5
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCC
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDS 163 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~ 163 (377)
..+||++++..+.|.-...+.+..+.- +.+.+..+ ++ ..||.|-.+.+
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~--~n-eqG~~~~t~G~ 73 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSD--NN-EQGFDFRTLGD 73 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEcc--CC-CCCEEEEEeCC
Confidence 469999999888765444444433332 22233333 22 77888877743
No 298
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=39.62 E-value=1.9e+02 Score=22.87 Aligned_cols=59 Identities=22% Similarity=0.206 Sum_probs=40.7
Q ss_pred CCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 123 ~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
.+-..+++++++-|--++.+.. + .+-..|.|++.++-.+|.+.|....-++-.|.+..+
T Consensus 50 ~~~~~v~~~L~~~gI~~ksi~~--~------~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 50 PDGFYVYQHLDANGIHIKSITP--E------NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred chHHHHHHHHHHCCCCcceEEe--e------CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4557888888888755433222 2 124789999999999999988876655555555544
No 299
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=39.60 E-value=59 Score=23.52 Aligned_cols=36 Identities=28% Similarity=0.540 Sum_probs=24.6
Q ss_pred CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc
Q 017119 50 PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 50 ~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~ 90 (377)
.|.++... ..-+||-|||=.+.++..+|++.+.+..
T Consensus 33 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAP-----DSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE------TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEe-----CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 45555552 3378999999999999999998665543
No 300
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=39.47 E-value=1.1e+02 Score=21.76 Aligned_cols=56 Identities=13% Similarity=0.009 Sum_probs=40.0
Q ss_pred eEEEcCCCcCCCHHHHHHHHHh-cC-CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHH
Q 017119 26 TAYVGNLDPQVTEELLWELFVQ-AG-PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~-~G-~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~ 84 (377)
.-|+-.++.+.+..||++.++. || .|.+|..+.-.. ..-=|||++...++|.+.-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 4555568899999999999987 45 466666554431 22359999999888877654
No 301
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=38.76 E-value=1.7e+02 Score=24.88 Aligned_cols=75 Identities=16% Similarity=0.185 Sum_probs=47.9
Q ss_pred CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCccccCCCCeEEEcCCCCc-------
Q 017119 50 PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPD------- 122 (377)
Q Consensus 50 ~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~------- 122 (377)
.+.-|.+.+++ +.|.+.++|.+.++ ..+..+....|++......- .....+|||.-+.-.
T Consensus 36 ~l~PVlF~rdK----------~I~qs~e~ai~~lE-~e~KlWreteI~I~~g~p~V--NE~TkkIYICPFTGKVF~DNt~ 102 (238)
T PF10915_consen 36 NLQPVLFVRDK----------IIFQSAEDAIRILE-EEGKLWRETEIKIQSGKPSV--NEQTKKIYICPFTGKVFGDNTH 102 (238)
T ss_pred CCCceeeecch----------hhccCHHHHHHHHH-HhcchheeeeEEEecCCccc--ccccceEEEcCCcCccccCCCC
Confidence 45566666665 67899999988888 45556667777776655433 233456777544322
Q ss_pred -CCHHHHHHHHhhcCC
Q 017119 123 -VDEKLLYDTFSAFGV 137 (377)
Q Consensus 123 -~~~~~l~~~f~~~G~ 137 (377)
--.+.|+++.+++-.
T Consensus 103 ~nPQDAIYDWvSkCPe 118 (238)
T PF10915_consen 103 PNPQDAIYDWVSKCPE 118 (238)
T ss_pred CChHHHHHHHHhhCCc
Confidence 135678888877643
No 302
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=38.21 E-value=1.5e+02 Score=21.14 Aligned_cols=62 Identities=11% Similarity=0.104 Sum_probs=40.8
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
.++|.|-+.- -+.+..+|...|.-+.+..+-.....+.++ +.++...+.+..++.++.|++.
T Consensus 6 si~v~n~pGV--L~Ri~~lf~rRgfNI~Sl~vg~te~~~~sr-iti~~~~~~~~i~qi~kQL~KL 67 (76)
T PRK06737 6 SLVIHNDPSV--LLRISGIFARRGYYISSLNLNERDTSGVSE-MKLTAVCTENEATLLVSQLKKL 67 (76)
T ss_pred EEEEecCCCH--HHHHHHHHhccCcceEEEEecccCCCCeeE-EEEEEECCHHHHHHHHHHHhCC
Confidence 4566665543 367888999988776665554333333333 5566678999888888888764
No 303
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=38.19 E-value=3.5e+02 Score=25.46 Aligned_cols=47 Identities=19% Similarity=0.192 Sum_probs=30.5
Q ss_pred HHHHHHHhcCCeEEEEEeccC-----CCCCccceEEEEeCCHHHHHHHHHHh
Q 017119 40 LLWELFVQAGPVVNVYVPKDR-----VTNLHQGYGFVEFRSEEDADYAIKVL 86 (377)
Q Consensus 40 ~L~~~f~~~G~i~~v~i~~~~-----~~~~~~g~afV~f~~~e~A~~A~~~l 86 (377)
+..+.+++.|.|.-+..-.+. ......-.+||+..+.++.+.|.+..
T Consensus 35 ~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~e~~a~~~~ 86 (344)
T PRK02290 35 EDVERVRELGRIKVAADDPDADAVVISGSAGEDGAYVEIRDKEDEEFAAELA 86 (344)
T ss_pred HHhHHHHhhCCeeEEEEcCCcchhhhcccCCceEEEEEECCHHHHHHHHHhh
Confidence 556667777877655542221 11223457899999999999988844
No 304
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=37.95 E-value=53 Score=23.76 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=23.8
Q ss_pred CCcceEEEEeCCHHHHHHHHHHHcCceec
Q 017119 152 NSRGFGFISYDSFEASDAAIEAMNGQYLC 180 (377)
Q Consensus 152 ~~kg~afV~f~~~~~A~~a~~~l~~~~~~ 180 (377)
..+||.||+-.+.++..+|++.+.+....
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~~~ 70 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIRGS 70 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEEEE
T ss_pred CCceEEEEEeCCHHHHHHHHhcccceeec
Confidence 37999999999999999999987765543
No 305
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=37.75 E-value=2.3e+02 Score=23.23 Aligned_cols=66 Identities=15% Similarity=0.078 Sum_probs=36.2
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcC-CeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCce
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFG-VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 178 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G-~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~ 178 (377)
..+.||++-..--.+.+. .....| ..+.+..+..-.-.+.+....-+.+..++..++|++.++...
T Consensus 89 ~vvLIGhiv~tdiqDTId-~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~~e~l~ea~~~l~ev~ 155 (170)
T COG2061 89 DVVLIGHIVHTDIQDTID-RINSIGGAEVVDLSLSMPGIEGESSARITIIAVGKEKLDEALRRLKEVA 155 (170)
T ss_pred eEEEEEeeecCcHHHHHH-HhhccCCEEEEEEEeecCCCCCCcceeEEEEEcChhHHHHHHHHHHHHH
Confidence 468888886433333333 333334 223344443332344554444456668888999998876543
No 306
>PHA00742 hypothetical protein
Probab=37.71 E-value=29 Score=28.57 Aligned_cols=61 Identities=18% Similarity=0.158 Sum_probs=36.0
Q ss_pred EEEcCCCCcCCHHHHHHHHhhcCCeee---cceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 114 LFIGNLDPDVDEKLLYDTFSAFGVIVT---NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 114 l~V~nl~~~~~~~~l~~~f~~~G~vv~---~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
+||.---..+||++-++ +||+.|- +.++....+...-...-||.|.|.|+-.++|.+|+-.
T Consensus 92 ~~IDitGSswteeqSke---RYGe~vyAiLstKvevA~kydV~GRv~FihynD~EDKlk~isALqil 155 (211)
T PHA00742 92 VWIDITGSSWTEEQSKE---RYGESVYAILSTKVEVAKKYDVMGRVWFIHYNDTEDKLKCISALQIL 155 (211)
T ss_pred EEEEccCCccchhhhHH---hcCcchHHHHHHHHHHHHhhcccceEEEEEecChhHhhhhhHHHHHh
Confidence 56655555677776554 3454321 2222222223334446799999999999988887643
No 307
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=37.62 E-value=2.1e+02 Score=29.88 Aligned_cols=14 Identities=7% Similarity=0.133 Sum_probs=6.5
Q ss_pred eCCHHHHHHHHHHh
Q 017119 73 FRSEEDADYAIKVL 86 (377)
Q Consensus 73 f~~~e~A~~A~~~l 86 (377)
|.+.+-..+++..+
T Consensus 85 ~fn~df~~a~lQf~ 98 (830)
T KOG1923|consen 85 FFNADFSAAKLQFY 98 (830)
T ss_pred ccChHHHHHHHHHH
Confidence 44455444455433
No 308
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=37.24 E-value=3.6e+02 Score=25.34 Aligned_cols=50 Identities=6% Similarity=0.035 Sum_probs=30.5
Q ss_pred CCCCeEEEcCC-Cc-CCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHH
Q 017119 22 NQDATAYVGNL-DP-QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84 (377)
Q Consensus 22 ~~~~~l~v~nL-p~-~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~ 84 (377)
....-|-|.+- +. ++++++|++++++|+-.....+++.. .+.++..+|+.
T Consensus 183 k~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~d-------------vTlDd~id~l~ 234 (365)
T COG1163 183 KESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRED-------------VTLDDLIDALE 234 (365)
T ss_pred eccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecC-------------CcHHHHHHHHh
Confidence 34445555553 33 48999999999999854333333321 25666666665
No 309
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=36.81 E-value=90 Score=25.79 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=36.8
Q ss_pred eEEeecCcCccccCCCCeEEEcCCCCcCCHH----HHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHH
Q 017119 96 IRVNKASQDKKSLDVGANLFIGNLDPDVDEK----LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171 (377)
Q Consensus 96 i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~----~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~ 171 (377)
+.+..++-.+........+.|.|.+.....+ .++++|......+ +..|..++.+.+....++.+
T Consensus 83 v~~~~~d~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~L------------k~~G~l~lv~~~~~~~~~~l 150 (170)
T PF05175_consen 83 VEVVQSDLFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYL------------KPGGRLFLVINSHLGYERLL 150 (170)
T ss_dssp EEEEESSTTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHE------------EEEEEEEEEEETTSCHHHHH
T ss_pred cccccccccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhc------------cCCCEEEEEeecCCChHHHH
Confidence 6666655444333456679999998765544 3555555543332 13566666776666666666
Q ss_pred HHH
Q 017119 172 EAM 174 (377)
Q Consensus 172 ~~l 174 (377)
+.+
T Consensus 151 ~~~ 153 (170)
T PF05175_consen 151 KEL 153 (170)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 310
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=35.68 E-value=29 Score=20.72 Aligned_cols=16 Identities=25% Similarity=0.295 Sum_probs=10.4
Q ss_pred cCCCHHHHHHHHHhcC
Q 017119 34 PQVTEELLWELFVQAG 49 (377)
Q Consensus 34 ~~~te~~L~~~f~~~G 49 (377)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4688999999998764
No 311
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.30 E-value=1.8e+02 Score=23.60 Aligned_cols=56 Identities=13% Similarity=0.275 Sum_probs=39.3
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhc---CCeEEEEEeccCCC---------CCccc-eEEEEeCCHHH
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQA---GPVVNVYVPKDRVT---------NLHQG-YGFVEFRSEED 78 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~---G~i~~v~i~~~~~~---------~~~~g-~afV~f~~~e~ 78 (377)
++..|++..++..+++++.++..++- +++.+|.+-+..+. ...+. |-+|.|++-+.
T Consensus 86 d~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 86 DDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 44789999999999999999998875 45666666443321 22333 78888887654
No 312
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=35.21 E-value=2.1e+02 Score=30.20 Aligned_cols=61 Identities=10% Similarity=0.198 Sum_probs=37.5
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhc---CCeEEEEEeccCCCCCccceEE-EEeCCHHHHHHHHHHh
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQA---GPVVNVYVPKDRVTNLHQGYGF-VEFRSEEDADYAIKVL 86 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~---G~i~~v~i~~~~~~~~~~g~af-V~f~~~e~A~~A~~~l 86 (377)
..+|.|..||+.+..++|.+.+.+. +.+..|.-++|..+. .|.-| |++.....++..+..|
T Consensus 248 ~~~i~ItEiP~~~~~~~~~~~i~~l~~~~~~~~i~~~~Des~~--~~vrivi~lk~~~~~~~~~~~l 312 (738)
T TIGR01061 248 LNQIVITEIPYETNKANIVKKIEEIIFDNKVAGIEEVRDESDR--NGIRIIIELKKDANAEKILNFL 312 (738)
T ss_pred CcEEEEEecCCccCHHHHHHHHHHHHhcCCccccceeeeccCC--CceEEEEEECCCCCHHHHHHHH
Confidence 3579999999999999887765542 334444444554322 34555 4566555566555443
No 313
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=34.74 E-value=1.2e+02 Score=20.97 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=36.9
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 75 (377)
..+++|.++....=...+.+.+++...+.++.+-.. ++-++|+|.+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~------~~~~~V~~d~ 48 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE------KGTATVTFDS 48 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc------cCeEEEEEcC
Confidence 357888888888888899999999988888888443 3458899988
No 314
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=34.67 E-value=89 Score=29.36 Aligned_cols=50 Identities=24% Similarity=0.123 Sum_probs=32.3
Q ss_pred CCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHH
Q 017119 31 NLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84 (377)
Q Consensus 31 nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~ 84 (377)
....+..-.||+.+.+-||. .|....+ .....-|-+|+|.+.+.|++.++
T Consensus 9 q~hl~Fr~pE~eala~lF~~--~i~~sq~--~~t~~PF~iv~~~s~~~Ar~~~k 58 (421)
T KOG2671|consen 9 QSHLDFRLPELEALASLFGL--QIDESQK--LHTTSPFFIVEFESEEIARNLIK 58 (421)
T ss_pred hhhhccchHHHHHHHHHHhh--hhhhhhh--hcCCCceEEEEeCchHHHHHHHH
Confidence 33345556677777777763 2222222 23345699999999999998876
No 315
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=34.59 E-value=78 Score=23.73 Aligned_cols=51 Identities=24% Similarity=0.347 Sum_probs=30.0
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 75 (377)
+-..-||||+++..+-|.--..+.+.++. -++.++... ....||+|-++.+
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~--~~eqG~~~~t~G~ 75 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWAT--NTESGFEFQTFGE 75 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcC--CCCCCcEEEecCC
Confidence 34567999999887766544444444443 233333322 3344888877665
No 316
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=34.57 E-value=43 Score=31.55 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=46.6
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCC-eEEEEEeccCC--CCCccceEEEEeCCHHHHHHHHHHhcCcc
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRV--TNLHQGYGFVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~-i~~v~i~~~~~--~~~~~g~afV~f~~~e~A~~A~~~l~~~~ 90 (377)
.....|.|.+|+..+++.+|.+.+..|-. +....+..... ...-.+.|||.|...++.....+.++++.
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~i 76 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYI 76 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceE
Confidence 34568899999999999999988887643 22233321111 12224679999999999777777666654
No 317
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=34.52 E-value=1.8e+02 Score=28.61 Aligned_cols=63 Identities=17% Similarity=0.096 Sum_probs=40.6
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHh---cCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQ---AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNM 88 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~---~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~ 88 (377)
..++|.|..||+.++.++|.+.+.+ -|.|. |.-++|..+. . -.--|++....+++..+..|-.
T Consensus 219 ~~~~ivItEIPy~~~t~~lie~I~~l~~~gki~-I~~i~D~s~~-~-v~i~I~Lk~~~~~~~vl~~Ly~ 284 (479)
T PRK09630 219 NDKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFSTD-L-PHIEIKLPKGIYAKDLLRPLFT 284 (479)
T ss_pred cCCEEEEEeCCCcccHHHHHHHHHHHHhcCCCc-cceeeccCCC-C-ceEEEEECCCCCHHHHHHHHHh
Confidence 3469999999999999988776543 36664 4444554222 2 1234567777777777776543
No 318
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=34.16 E-value=2.3e+02 Score=29.58 Aligned_cols=8 Identities=25% Similarity=0.642 Sum_probs=2.9
Q ss_pred HHHHHhhc
Q 017119 128 LYDTFSAF 135 (377)
Q Consensus 128 l~~~f~~~ 135 (377)
+..-|..|
T Consensus 137 l~~Q~~sy 144 (830)
T KOG1923|consen 137 LQRQFQSY 144 (830)
T ss_pred HHHHHHHH
Confidence 33333333
No 319
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=33.98 E-value=1.8e+02 Score=21.05 Aligned_cols=58 Identities=10% Similarity=0.145 Sum_probs=38.8
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcC-----CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAG-----PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNM 88 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G-----~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~ 88 (377)
+..|+|..+...++-++|.+.++..- ..-.++++.+. |- .|++.+.++-+.|++.+.-
T Consensus 8 ~gdi~it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~DEE--GD-----p~tiSS~~EL~EA~rl~~~ 70 (83)
T cd06404 8 NGDIMITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWIDEE--GD-----PCTISSQMELEEAFRLYEL 70 (83)
T ss_pred cCcEEEEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEECCC--CC-----ceeecCHHHHHHHHHHHHh
Confidence 45678888888888888876665432 23334444443 22 3889999999999985543
No 320
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=33.98 E-value=31 Score=30.20 Aligned_cols=29 Identities=24% Similarity=0.198 Sum_probs=25.9
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCe
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVI 138 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~v 138 (377)
...+||+-|++..++++-|.++.++.|.+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~v 67 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHV 67 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhh
Confidence 34689999999999999999999999865
No 321
>PF14893 PNMA: PNMA
Probab=33.84 E-value=43 Score=31.31 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=22.7
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHh
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQ 47 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~ 47 (377)
+..+.|.|.+||.+|++++|.+.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 45678999999999999999988764
No 322
>PRK05560 DNA gyrase subunit A; Validated
Probab=33.74 E-value=1.7e+02 Score=31.21 Aligned_cols=63 Identities=14% Similarity=0.206 Sum_probs=38.1
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhc---CCeEEEEEeccCCCCCccceEE-EEeCCHHHHHHHHHHhc
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQA---GPVVNVYVPKDRVTNLHQGYGF-VEFRSEEDADYAIKVLN 87 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~---G~i~~v~i~~~~~~~~~~g~af-V~f~~~e~A~~A~~~l~ 87 (377)
..++|.|.-||+.+..+.+.+.+.+. +.+..+.-++|..+ ..|+-| |++....+++..++.|-
T Consensus 250 ~~~~i~iteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~--~~~~~~~i~~~~~~~~~~~~~~l~ 316 (805)
T PRK05560 250 GREAIIVTEIPYQVNKARLIEKIAELVKEKKIEGISDLRDESD--RDGMRIVIELKRDAVPEVVLNNLY 316 (805)
T ss_pred CCcEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccchhcCC--CCceEEEEEECCCCCHHHHHHHHH
Confidence 35689999999999988876665432 44444444455433 334555 45665555665555443
No 323
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.53 E-value=2.9e+02 Score=28.18 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcC--cc------cCCceeEEeecCcCccccCC
Q 017119 39 ELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNM--IK------LYGKPIRVNKASQDKKSLDV 110 (377)
Q Consensus 39 ~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~--~~------~~g~~i~v~~~~~~~~~~~~ 110 (377)
++|.+.|..-+.|..|.+.. -||-++.+....-++...+.+.. .. ..++.|.|++++.+-
T Consensus 61 ~~i~~~l~~~~~~~~veiaG-------pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNp----- 128 (577)
T COG0018 61 EEIAEKLDTDEIIEKVEIAG-------PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANP----- 128 (577)
T ss_pred HHHHHhccccCcEeEEEEcC-------CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCC-----
Confidence 34444454444566666521 13444444443444444444441 11 246788898887654
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIM 145 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~ 145 (377)
..-+.||++=..+-=+.|.++++..|.-|.....+
T Consensus 129 tkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yv 163 (577)
T COG0018 129 TGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYV 163 (577)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeE
Confidence 34588888888877788888888888665443433
No 324
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=32.97 E-value=4.6e+02 Score=25.35 Aligned_cols=7 Identities=43% Similarity=0.539 Sum_probs=2.9
Q ss_pred HHHHHHh
Q 017119 41 LWELFVQ 47 (377)
Q Consensus 41 L~~~f~~ 47 (377)
+-++|.+
T Consensus 52 FGELf~d 58 (518)
T KOG1830|consen 52 FGELFND 58 (518)
T ss_pred HHHHHHH
Confidence 3344443
No 325
>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]
Probab=32.85 E-value=3.8e+02 Score=24.85 Aligned_cols=85 Identities=19% Similarity=0.250 Sum_probs=55.0
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeec
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~ 192 (377)
.-|-+...+.++.++|+++|..--+++. +.+ -...+|=++-+..+|+.|++.|... .-++.+.|.+....
T Consensus 131 ~eytg~Y~~~~~~~el~~~~k~qle~~~--------~~g-vD~L~fETip~~~EA~a~l~~l~~~-~~~~p~~is~t~~d 200 (317)
T KOG1579|consen 131 SEYTGIYGDNVEFEELYDFFKQQLEVFL--------EAG-VDLLAFETIPNVAEAKAALELLQEL-GPSKPFWISFTIKD 200 (317)
T ss_pred cccccccccccCHHHHHHHHHHHHHHHH--------hCC-CCEEEEeecCCHHHHHHHHHHHHhc-CCCCcEEEEEEecC
Confidence 3455666777889999999976533321 111 2335677778899999999987765 34567777777666
Q ss_pred CcCCcCCCChhhhhhh
Q 017119 193 DTKGERHGTPAERILA 208 (377)
Q Consensus 193 ~~~~~~~~~~~~~~~~ 208 (377)
....+.+...+..+.
T Consensus 201 -~g~l~~G~t~e~~~~ 215 (317)
T KOG1579|consen 201 -EGRLRSGETGEEAAQ 215 (317)
T ss_pred -CCcccCCCcHHHHHH
Confidence 455555555555444
No 326
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=32.84 E-value=4.6e+02 Score=25.33 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=8.7
Q ss_pred HHHHHHhhcCCe--eecceeecC
Q 017119 127 LLYDTFSAFGVI--VTNPKIMRD 147 (377)
Q Consensus 127 ~l~~~f~~~G~v--v~~~~i~~d 147 (377)
-|.+.+.++..- +......||
T Consensus 120 pl~etY~~cD~PPpLn~LtpYRD 142 (518)
T KOG1830|consen 120 PLTETYAQCDKPPPLNILTPYRD 142 (518)
T ss_pred hHHHHHhccCCCCCccccCcccc
Confidence 344444444332 233344444
No 327
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=32.79 E-value=1.5e+02 Score=19.57 Aligned_cols=51 Identities=8% Similarity=0.010 Sum_probs=25.6
Q ss_pred CHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCH-HHHHHHHHHHcC
Q 017119 124 DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSF-EASDAAIEAMNG 176 (377)
Q Consensus 124 ~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~-~~A~~a~~~l~~ 176 (377)
.-.+|..+|.+++.-+..+....+. +......++++... +....+++.|..
T Consensus 13 ~l~~i~~~l~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~ 64 (72)
T cd04878 13 VLNRISGLFARRGFNIESLTVGPTE--DPGISRITIVVEGDDDVIEQIVKQLNK 64 (72)
T ss_pred HHHHHHHHHHhCCCCEEEEEeeecC--CCCeEEEEEEEECCHHHHHHHHHHHhC
Confidence 3567888888887665544432221 11112223333221 556666666553
No 328
>PRK06545 prephenate dehydrogenase; Validated
Probab=32.72 E-value=1.8e+02 Score=27.43 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=48.7
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
.-..|||.--+.--.-..|..++...|..++++.|.+.+ +...|..-+.|.+.+++.+|.+.|...
T Consensus 289 ~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~ 354 (359)
T PRK06545 289 SFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAR--EDIHGVLQISFKNEEDRERAKALLEEF 354 (359)
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeecc--CCcCceEEEEeCCHHHHHHHHHHHHhc
Confidence 345677765555445567777788888778888887764 456677889999999999999887543
No 329
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=32.71 E-value=59 Score=30.65 Aligned_cols=68 Identities=13% Similarity=0.262 Sum_probs=46.5
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCC--CCCCcceEEEEeCCHHHHHHHHHHHcCcee
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD--TGNSRGFGFISYDSFEASDAAIEAMNGQYL 179 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~--~~~~kg~afV~f~~~~~A~~a~~~l~~~~~ 179 (377)
+.+.|.+|+..+++++|.+.+..+-.-+....+..... .....+.+||.|...++.....+.++|..+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 56889999999999999888877544333333331100 011244589999999998888888887765
No 330
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=32.69 E-value=3.7e+02 Score=24.14 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHhcCcccCCceeEEeecCcCccccC-CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCC
Q 017119 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNS 153 (377)
Q Consensus 75 ~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~-~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~ 153 (377)
.++.|+.|.+++....+.++ +.+...+-.+.... .-..||+.-.+.|---+.+.+++..-
T Consensus 128 r~d~~k~A~~Nl~~~~l~d~-v~~~~~Dv~~~~~~~~vDav~LDmp~PW~~le~~~~~Lkpg------------------ 188 (256)
T COG2519 128 REDFAKTARENLSEFGLGDR-VTLKLGDVREGIDEEDVDAVFLDLPDPWNVLEHVSDALKPG------------------ 188 (256)
T ss_pred cHHHHHHHHHHHHHhccccc-eEEEeccccccccccccCEEEEcCCChHHHHHHHHHHhCCC------------------
Confidence 56778999998888766664 33333222221111 22234443222222223333333322
Q ss_pred cceEEEEeCCHHHHHHHHHHHcCc
Q 017119 154 RGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 154 kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
|.+.+..-+.+.+++.++.|.+.
T Consensus 189 -g~~~~y~P~veQv~kt~~~l~~~ 211 (256)
T COG2519 189 -GVVVVYSPTVEQVEKTVEALRER 211 (256)
T ss_pred -cEEEEEcCCHHHHHHHHHHHHhc
Confidence 22333345678888888888776
No 331
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=32.45 E-value=72 Score=29.64 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=38.9
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEec----------cCCCCCccceEEEEeCCHHHHHHHHHH
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPK----------DRVTNLHQGYGFVEFRSEEDADYAIKV 85 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~----------~~~~~~~~g~afV~f~~~e~A~~A~~~ 85 (377)
++...+||.++-..+..+-|+.+-+..-+...+.++. +....+.-.|+.+.|.++++|+...+.
T Consensus 158 eka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~~ 231 (343)
T KOG2854|consen 158 EKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFARA 231 (343)
T ss_pred hheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHHh
Confidence 4566788999888777776665544332222211111 000123346899999999999887773
No 332
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=32.43 E-value=1.5e+02 Score=31.50 Aligned_cols=61 Identities=18% Similarity=0.237 Sum_probs=35.6
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhc---CCeEEEEEeccCCCCCccceEEE-EeCCHHHHHHHHHHh
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQA---GPVVNVYVPKDRVTNLHQGYGFV-EFRSEEDADYAIKVL 86 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV-~f~~~e~A~~A~~~l 86 (377)
.++|.|..||+.+..+++.+...+. +.+..|.-++|..+. .|+-|| ++.....++..++.|
T Consensus 248 ~~~i~IteiP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~~--~~~~~~i~~k~~~~~~~~~~~l 312 (800)
T TIGR01063 248 REAIIVTEIPYQVNKARLIEKIAELVREKKIEGISDIRDESDR--EGIRIVIELKRDAVAEVVLNNL 312 (800)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHhcCCCCccccceecCCC--CceEEEEEeCCCCCHHHHHHHH
Confidence 4689999999999988876655533 334444444444222 245554 455444555555544
No 333
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=32.27 E-value=68 Score=24.44 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=17.7
Q ss_pred CCcCCCHHHHHHHHHhcCCeEEE
Q 017119 32 LDPQVTEELLWELFVQAGPVVNV 54 (377)
Q Consensus 32 Lp~~~te~~L~~~f~~~G~i~~v 54 (377)
+..++|+++|++.|.+|-.=.++
T Consensus 41 v~~~Tt~~eiedaF~~f~~RdDI 63 (121)
T KOG3432|consen 41 VDSKTTVEEIEDAFKSFTARDDI 63 (121)
T ss_pred EeccCCHHHHHHHHHhhccccCe
Confidence 44589999999999999653333
No 334
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=31.89 E-value=40 Score=28.38 Aligned_cols=63 Identities=13% Similarity=-0.024 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHhcCcccCCceeEEeecCcCccc-cCCCCeEEEcCCCCcCC---HHHHHHHHhhcCCe
Q 017119 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVD---EKLLYDTFSAFGVI 138 (377)
Q Consensus 75 ~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~-~~~~~~l~V~nl~~~~~---~~~l~~~f~~~G~v 138 (377)
+.+..+.|.+++....+.+ .|.+...+..+.. .+....+.|.|.+|... .+++++++..++..
T Consensus 70 ~~~~v~~a~~N~~~ag~~~-~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~ 136 (179)
T PF01170_consen 70 DPKAVRGARENLKAAGVED-YIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRE 136 (179)
T ss_dssp SHHHHHHHHHHHHHTT-CG-GEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcccCC-ceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHH
Confidence 4555566666665444433 3443332222222 23345699999999764 35677888777655
No 335
>CHL00030 rpl23 ribosomal protein L23
Probab=31.84 E-value=1.1e+02 Score=22.66 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=23.7
Q ss_pred eEEEcCCCCcCCHHHHHHHHhh-cCCeeecceeec
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSA-FGVIVTNPKIMR 146 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~-~G~vv~~~~i~~ 146 (377)
+-|+-.++.+.+..+|+++++. ||.-|..+..+.
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~ 54 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHR 54 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEE
Confidence 4555566778899999999988 554455555543
No 336
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=31.73 E-value=2.8e+02 Score=24.51 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=79.7
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhcCC-eEEE---EEec-----cCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC---C
Q 017119 26 TAYVGNLDPQVTEELLWELFVQAGP-VVNV---YVPK-----DRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY---G 93 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~G~-i~~v---~i~~-----~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~---g 93 (377)
+|+|+.-. -..+++.+.|++.|- +..+ ++.. ........ |.+|.|.+...++.+.+.+...... +
T Consensus 3 ~vlvtR~~--~~~~~~~~~l~~~G~~~~~~P~i~~~~~~~l~~~l~~l~~-~d~vvfTS~~av~~~~~~l~~~~~~~~~~ 79 (248)
T COG1587 3 RVLVTRPR--EQAEELAALLRKAGAEPLELPLIEIEPLPDLEVALEDLDS-ADWVVFTSPNAVRFFFEALKEQGLDALKN 79 (248)
T ss_pred EEEEeCch--hhhHHHHHHHHhCCCcceeecceeeecchhHHHHHhcccc-CCEEEEECHHHHHHHHHHHHhhccccccc
Confidence 55565432 446677888888874 2222 2211 11112222 7899999999999988877665533 3
Q ss_pred ceeEEe-ecCcC---------------c----------cccC-CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeec
Q 017119 94 KPIRVN-KASQD---------------K----------KSLD-VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMR 146 (377)
Q Consensus 94 ~~i~v~-~~~~~---------------~----------~~~~-~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~ 146 (377)
..+.+- ..... . .... ..+.+++.. ....+.|.+.+...|.-+..+.+.+
T Consensus 80 ~~i~aVG~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~---~~~r~~l~~~L~~~G~~v~~~~~Y~ 156 (248)
T COG1587 80 KKIAAVGEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRG---NGGREVLEEKLEERGAEVREVEVYR 156 (248)
T ss_pred CeEEEEcHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcC---CCchHHHHHHHHhCCCEEEEEeeee
Confidence 333321 11000 0 0000 112344332 2233667777777776555544433
Q ss_pred CCCC----------CCCcceEEEEeCCHHHHHHHHHHHcCcee
Q 017119 147 DPDT----------GNSRGFGFISYDSFEASDAAIEAMNGQYL 179 (377)
Q Consensus 147 d~~~----------~~~kg~afV~f~~~~~A~~a~~~l~~~~~ 179 (377)
.... -...++-.|.|.+...++..++.+.....
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~d~v~ftS~~~v~~~~~~~~~~~~ 199 (248)
T COG1587 157 TEPPPLDEATLIELLKLGEVDAVVFTSSSAVRALLALAPESGI 199 (248)
T ss_pred ecCCCccHHHHHHHHHhCCCCEEEEeCHHHHHHHHHHccccch
Confidence 3221 12344568999999999999888776553
No 337
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=31.29 E-value=25 Score=24.30 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=25.9
Q ss_pred HHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHc
Q 017119 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175 (377)
Q Consensus 126 ~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~ 175 (377)
++|++.|..+....+.+++ .+|..|.+.++|...+..+.
T Consensus 27 ~~v~~~~~~~~~f~k~vkL-----------~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVKL-----------KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhhh-----------hhccCCCCHHHHHHHHHHhh
Confidence 5777777665443222222 37899999999888877653
No 338
>PHA00019 IV phage assembly protein
Probab=31.27 E-value=3.2e+02 Score=26.58 Aligned_cols=59 Identities=12% Similarity=0.019 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEe-------CCHHHHHHHHHHhcCccc--CCceeEE
Q 017119 35 QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEF-------RSEEDADYAIKVLNMIKL--YGKPIRV 98 (377)
Q Consensus 35 ~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f-------~~~e~A~~A~~~l~~~~~--~g~~i~v 98 (377)
++.+.+|+++|+-++.+..+.++.+..- . +.|+. ...++|-.++...++..+ .|..+.+
T Consensus 27 ~f~~~dI~~vl~~la~~~g~NiVidp~V---~--G~vTl~~~~l~~v~~~qaLd~iL~~~gl~~~~~g~v~~I 94 (428)
T PHA00019 27 ELNNSPIREFVSWYSQQTGKSVVLGPDV---K--GNVTVYSADVNPANLPQFFDSVLRANGFDLVAGGPAVVI 94 (428)
T ss_pred EecCCCHHHHHHHHHHhcCceEEECCCc---c--eEEEEecccccCCCHHHHHHHHHHhcCceEEEeCCEEEE
Confidence 4456688888888888888877776521 1 23444 244455554544566544 3545555
No 339
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=31.21 E-value=80 Score=23.67 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=28.3
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCH
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSF 164 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~ 164 (377)
..||||+++..+.|.-...+.+.++.- +.+.+..+ + ...||.|-.+.+.
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~~~--~-~eqG~~~~t~G~~ 76 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAWAT--N-TESGFEFQTFGEN 76 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEEcC--C-CCCCcEEEecCCC
Confidence 469999999888655443444434332 22233333 2 3348988887653
No 340
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=30.84 E-value=1.2e+02 Score=22.55 Aligned_cols=19 Identities=26% Similarity=0.174 Sum_probs=16.2
Q ss_pred cceEEEEeCCHHHHHHHHH
Q 017119 66 QGYGFVEFRSEEDADYAIK 84 (377)
Q Consensus 66 ~g~afV~f~~~e~A~~A~~ 84 (377)
.....|+|.+.+.|..|.+
T Consensus 53 tr~vviEFps~~~ar~~y~ 71 (96)
T COG5470 53 TRNVVIEFPSLEAARDCYN 71 (96)
T ss_pred ccEEEEEcCCHHHHHHHhc
Confidence 5678999999999988865
No 341
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=30.80 E-value=46 Score=24.38 Aligned_cols=50 Identities=22% Similarity=0.467 Sum_probs=28.4
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhc--CCeEEEEEeccCCCCCccceEEEEeCC
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQA--GPVVNVYVPKDRVTNLHQGYGFVEFRS 75 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~ 75 (377)
+-..-|||++++..+-|.- .+...++ +. -++.++... ....||.|-++.+
T Consensus 23 Ev~~GVyVg~~s~rVRe~l-W~~v~~~~~~~-G~avm~~~~--~~e~G~~~~t~G~ 74 (87)
T TIGR01873 23 EPRAGVYVGGVSASVRERI-WDYLAQHCPPK-GSLVITWSS--NTCPGFEFFTLGE 74 (87)
T ss_pred ecCCCcEEcCCCHHHHHHH-HHHHHHhCCCC-ccEEEEEeC--CCCCCcEEEecCC
Confidence 3456799999988776544 4444443 32 233333332 3455788876654
No 342
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=30.49 E-value=1.3e+02 Score=31.09 Aligned_cols=61 Identities=11% Similarity=0.182 Sum_probs=45.0
Q ss_pred cCCHHHHHHHHhhcCCe----eecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeee
Q 017119 122 DVDEKLLYDTFSAFGVI----VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 191 (377)
Q Consensus 122 ~~~~~~l~~~f~~~G~v----v~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~ 191 (377)
.++-.+|..++..-+.| +-.++|+ ..|.||+. ..+.|.+.++.|++..+.|+.|.|+.+..
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIEL-PKGMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEc-ChhhHHHHHHHhccccccCCceEEEECCC
Confidence 46667777777766655 2223343 34789988 45678999999999999999999998753
No 343
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=30.26 E-value=3.3e+02 Score=29.16 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=40.0
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHh---cCCeEEEEEeccCCCCCccceEE-EEeCCHHHHHHHHHHh
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQ---AGPVVNVYVPKDRVTNLHQGYGF-VEFRSEEDADYAIKVL 86 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~---~G~i~~v~i~~~~~~~~~~g~af-V~f~~~e~A~~A~~~l 86 (377)
.....+|.|.-||+.++.+.|.+...+ -|.|. |.-++|. +. ++.-| |++....+++..++.|
T Consensus 238 ~~~~~~ivItEiPy~~~t~~lie~I~~~~~~~ki~-I~di~D~-s~--~~vrivI~lk~~~~~~~~~~~L 303 (869)
T PRK12758 238 KLDKKTLVITEIPYGTTTSSLIDSILKANDKGKIK-IKKVEDN-TA--ADVEILVHLAPGVSPDKTIDAL 303 (869)
T ss_pred EcCCCEEEEEecCCcccHHHHHHHHHHHHhcCCCc-eeeeEec-CC--CceEEEEEeCCCCCHHHHHHHH
Confidence 344678999999999988887666543 46665 5555553 22 23333 5666666677666655
No 344
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.25 E-value=2.2e+02 Score=20.86 Aligned_cols=52 Identities=21% Similarity=0.263 Sum_probs=28.9
Q ss_pred CCHHHHHHHHhhcCCeeecceeecCCCCCCCcceE-EEEeCC--HHHHHHHHHHHcC
Q 017119 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG-FISYDS--FEASDAAIEAMNG 176 (377)
Q Consensus 123 ~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~a-fV~f~~--~~~A~~a~~~l~~ 176 (377)
-.-.++...|..+|.-+. +|.-....+....|- ||+++- .+...++++.|..
T Consensus 26 GsL~~vL~~Fa~~~INLt--~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~~ 80 (90)
T cd04931 26 GALAKVLRLFEEKDINLT--HIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLRN 80 (90)
T ss_pred cHHHHHHHHHHHCCCCEE--EEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHHH
Confidence 345677888888885533 443333333333443 577763 3445667776643
No 345
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=29.73 E-value=1.1e+02 Score=20.09 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=28.7
Q ss_pred CCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEE-EEeCCHHHHHHHHHHHc
Q 017119 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGF-ISYDSFEASDAAIEAMN 175 (377)
Q Consensus 123 ~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~af-V~f~~~~~A~~a~~~l~ 175 (377)
-.-.++.++|.+.|.-+..+....+... ..+.+ +.-.+..+..++++.|+
T Consensus 12 G~l~~v~~~la~~~inI~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~ 62 (66)
T PF01842_consen 12 GILADVTEILADHGINIDSISQSSDKDG---VGIVFIVIVVDEEDLEKLLEELE 62 (66)
T ss_dssp THHHHHHHHHHHTTEEEEEEEEEEESST---TEEEEEEEEEEGHGHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCHHHeEEEecCCC---ceEEEEEEECCCCCHHHHHHHHH
Confidence 3446788888888876666555554332 23333 33345555666665553
No 346
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=29.67 E-value=1.4e+02 Score=23.17 Aligned_cols=32 Identities=28% Similarity=0.287 Sum_probs=23.8
Q ss_pred CcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 121 ~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
..++++||.-+.++.|. +.+.|.+||+..+|-
T Consensus 73 ~~i~~edI~lv~~q~gv-------------------------s~~~A~~AL~~~~gD 104 (115)
T PRK06369 73 VEIPEEDIELVAEQTGV-------------------------SEEEARKALEEANGD 104 (115)
T ss_pred CCCCHHHHHHHHHHHCc-------------------------CHHHHHHHHHHcCCc
Confidence 35788999988888773 357788888876654
No 347
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=29.65 E-value=3.5e+02 Score=27.71 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=44.9
Q ss_pred eEEEcCCC-cCCCHHHHHHHHHhcCC-eEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCc
Q 017119 26 TAYVGNLD-PQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ 103 (377)
Q Consensus 26 ~l~v~nLp-~~~te~~L~~~f~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 103 (377)
.|-|.+.. .+.+.+++++.+++-|- .+.+.+. .+...|.|.+.++-.+|.+.++...-++..+.++.+..
T Consensus 42 avqis~~~~~~~~~~~~~~~l~~~~i~~~~~~~~--------~~~~~~r~~~~~~q~~a~~~l~~~l~~~y~valnl~~~ 113 (604)
T PRK12933 42 AVQVSAKAGLLLNVVELRQLLQAQGINVKRIDQK--------EGKTLIVLDDDSQQSQAKTLLSSMVKEPKELTLSLASA 113 (604)
T ss_pred eEEEecCCCCcchHHHHHHHHHHCCCCCceEEEe--------CCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence 34444332 33456677888887653 2333331 12678999999999999998877665666777766543
No 348
>cd00295 RNA_Cyclase RNA 3' phosphate cyclase domain - RNA phosphate cyclases are enzymes that catalyze the ATP-dependent conversion of 3'-phosphate at the end of RNA into 2', 3'-cyclic phosphodiester bond. The enzymes are conserved in eucaryotes, bacteria and archaea. The exact biological role of this enzyme is unknown, but it has been proposed that it is likely to function in cellular RNA metabolism and processing. RNA phosphate cyclase has been characterized in human (with at least three isozymes), and E. coli, and it seems to be taxonomically widespread. The crystal structure of RNA phospate cyclase shows that it consists of two domains. The larger domain contains three repeats of a fold originally identified in the bacterial translation initiation factor IF3.
Probab=29.49 E-value=2.6e+02 Score=26.25 Aligned_cols=49 Identities=16% Similarity=0.179 Sum_probs=28.6
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCC----CCCCCcceEEEEe
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP----DTGNSRGFGFISY 161 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~----~~~~~kg~afV~f 161 (377)
..|..+++..+.+.++..+.+.+.....++.+..+. +.+.+.|++.+.+
T Consensus 192 ~~~~~~l~~~va~R~~~~a~~~l~~~~~dv~i~~~~~~~~~~~~s~G~gi~L~ 244 (338)
T cd00295 192 IAAGTRVPPAFAEREIASAAGSFNLFEPDIFILPDDQRGDECGNGPGNSISLE 244 (338)
T ss_pred EEEEccCCHHHHHHHHHHHHHHhcccCCceEEEEeccccccCCCCCCeEEEEE
Confidence 467778888887777666555443333344444432 2556777765544
No 349
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=29.08 E-value=2.3e+02 Score=20.73 Aligned_cols=48 Identities=15% Similarity=0.022 Sum_probs=35.6
Q ss_pred CHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHc
Q 017119 124 DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175 (377)
Q Consensus 124 ~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~ 175 (377)
..+.++++++++|.-+.+..+. .|....+..+++-|.+.|.++.-.+.
T Consensus 21 R~~a~~~~~e~~Gg~l~~~y~t----~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 21 RAEAVRALIEALGGKLKSFYWT----LGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHHcCCEEEEEEEe----cCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 3467888999998876666664 35556678899999998888776554
No 350
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.08 E-value=1.9e+02 Score=19.63 Aligned_cols=62 Identities=8% Similarity=-0.064 Sum_probs=37.4
Q ss_pred EEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcC
Q 017119 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176 (377)
Q Consensus 114 l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~ 176 (377)
|.|.-.+..-.-.+|...++..|.-+..+...... .+......-|+..+.+.....+++|..
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~ 63 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRA 63 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhc
Confidence 34444455555678888888888765554443321 122222233566788888888887754
No 351
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=29.07 E-value=5 Score=36.17 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=60.1
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCC-CC-CccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRV-TN-LHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~-~~-~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
.++...|.-+||-.-+.+++|++++.+ ..+++.+... || .+.+| ||-+....+-. -.|+.+.|
T Consensus 6 ~eek~~lItrnlqE~lgee~lk~iL~e----r~l~~YwGtaptGrpHiay-~vpm~kiadfl----------kAGC~VtI 70 (360)
T KOG2144|consen 6 PEEKYKLITRNLQEVLGEEELKNILAE----RALKCYWGTAPTGRPHIAY-FVPMMKIADFL----------KAGCEVTI 70 (360)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHhc----cCceeeecCCCCCCcceee-eeehhHHHHHH----------hcCCeEEE
Confidence 344556666777778899999999988 2233333221 22 23344 55554443322 24666666
Q ss_pred eecCcCccccCCCCeEEEcCCCCc---------CCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEe
Q 017119 99 NKASQDKKSLDVGANLFIGNLDPD---------VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISY 161 (377)
Q Consensus 99 ~~~~~~~~~~~~~~~l~V~nl~~~---------~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f 161 (377)
-+++-.. |+.|+--. --+..|+.++...+.-++..+++...+...++-|.++.|
T Consensus 71 l~AD~hA---------~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~lEkL~fv~gs~yq~sk~ytld~~ 133 (360)
T KOG2144|consen 71 LFADLHA---------FLDNMKAPDELVIRRVGYYEKEIKAALGSINVPLEKLKFVKGSNYQLSKYYTLDMY 133 (360)
T ss_pred EehHHHH---------HHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcHHHHhhhcccccccCccchhhHH
Confidence 5554221 11111100 113455566655555555555555555555665555544
No 352
>COG3227 LasB Zinc metalloprotease (elastase) [Amino acid transport and metabolism]
Probab=29.03 E-value=2.3e+02 Score=27.86 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=64.8
Q ss_pred cCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCccccCC---
Q 017119 34 PQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDV--- 110 (377)
Q Consensus 34 ~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~--- 110 (377)
...+++++.++|+.-+.-.+++++... ....|+-+|.|.- ..+++.+.|..|.|...+........
T Consensus 49 ~a~~~Kei~~~l~~~n~~~nlk~~~~~--td~~G~t~vr~~q---------~vnGvpv~g~~v~vh~dk~g~v~~~~G~~ 117 (507)
T COG3227 49 SAPNEKEILQFLENVNADNNLKAISTD--TDPNGFTHVRYQQ---------VVNGVPVKGSEVIVHLDKNGVVKAVNGFV 117 (507)
T ss_pred ccCChHHHHHHHhcCChhhceeeEEee--ccCCCceEEEEEe---------eECCeeccCceEEEEECCCCcEEEeccee
Confidence 447888899999865544556655443 2246788888865 37899999999999887554321111
Q ss_pred --CCeEEEcCCCCcCC-HHHHHHHHhhcCCeee--c--ceeecCCCCCCCcceEEEEeCC
Q 017119 111 --GANLFIGNLDPDVD-EKLLYDTFSAFGVIVT--N--PKIMRDPDTGNSRGFGFISYDS 163 (377)
Q Consensus 111 --~~~l~V~nl~~~~~-~~~l~~~f~~~G~vv~--~--~~i~~d~~~~~~kg~afV~f~~ 163 (377)
...|. .+ .-.++ ++-|..++..++.-.. . +.++....++..+...+|.|..
T Consensus 118 ~~~~~~~-~~-t~~is~e~Aia~A~k~~~~~~~~e~~k~e~~v~~~n~~~~lvy~v~~~t 175 (507)
T COG3227 118 NKKKDLP-TN-TPKISAEQAIAIARKQFGYERLTESPKAELMVRVKNGSARLVYNVNIST 175 (507)
T ss_pred cccCCCc-cC-CCccCHHHHHHHHHHhhcccccccCcccceEEEecCCeeEEEEEeeEEe
Confidence 12222 22 22344 4455666666654310 0 1111111245566666666544
No 353
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=28.79 E-value=55 Score=30.32 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=25.6
Q ss_pred EEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecC
Q 017119 157 GFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193 (377)
Q Consensus 157 afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~ 193 (377)
|||+|++.++|+.|++.+....- +.++++.|-+.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP~ 35 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEPD 35 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCcc
Confidence 69999999999999997655443 445666665443
No 354
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=28.79 E-value=6.4e+02 Score=25.70 Aligned_cols=78 Identities=13% Similarity=0.073 Sum_probs=41.8
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
.+|...+-+|-+||= ...+.-++|.+.||.+.-..+.-.. --.++++.|...--|.--+..+-...+--+-|+
T Consensus 352 ~~er~HkVRla~GNG---LR~diW~~Fv~RFg~~~IgE~YgaT----Egn~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk 424 (649)
T KOG1179|consen 352 PEERQHKVRLAYGNG---LRPDIWQQFVKRFGIIKIGEFYGAT----EGNSNLVNYDGRVGACGFMSRLLKLLYPFRLIK 424 (649)
T ss_pred hhhcCceEEEEecCC---CCchHHHHHHHHcCCCeEEEEeccc----cCcceeeeecCccccccchhhhhhhccceEEEE
Confidence 344555667777774 2223334455678876555553322 123678888777766555554433333334455
Q ss_pred EeecC
Q 017119 98 VNKAS 102 (377)
Q Consensus 98 v~~~~ 102 (377)
++..+
T Consensus 425 ~D~~t 429 (649)
T KOG1179|consen 425 VDPET 429 (649)
T ss_pred ecCCC
Confidence 54443
No 355
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=28.50 E-value=91 Score=28.75 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=43.8
Q ss_pred CCccceEEEEeCCHHHHHHHHHHhcCcccC---CceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCee
Q 017119 63 NLHQGYGFVEFRSEEDADYAIKVLNMIKLY---GKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139 (377)
Q Consensus 63 ~~~~g~afV~f~~~e~A~~A~~~l~~~~~~---g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv 139 (377)
+....|..|+|--.++.+.|.....+.-+. -+-+..............+..+||-+-.+.-.+.+.-+++.++|.-+
T Consensus 13 g~~l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g~~vFv~~s~~~p~~~~~G~~l~~Hgdgv 92 (381)
T KOG0638|consen 13 GKFLRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQGKIVFVFNSAYNPDNSEYGDHLVKHGDGV 92 (381)
T ss_pred cceeeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcCCEEEEEecCCCCCchhhhhhhhhcccch
Confidence 445567788887766666665543332211 11111111111223344556778777777766677778888888765
Q ss_pred ec
Q 017119 140 TN 141 (377)
Q Consensus 140 ~~ 141 (377)
++
T Consensus 93 kd 94 (381)
T KOG0638|consen 93 KD 94 (381)
T ss_pred hc
Confidence 43
No 356
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=28.34 E-value=1.6e+02 Score=22.35 Aligned_cols=42 Identities=29% Similarity=0.451 Sum_probs=27.5
Q ss_pred HHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHH
Q 017119 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171 (377)
Q Consensus 126 ~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~ 171 (377)
.+|.+++.+.|. ..-.|+.|..+ +.-|+++++.|.+....++
T Consensus 27 PE~~a~lk~agi--~nYSIfLde~~--n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAGI--RNYSIFLDEEE--NLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcCC--ceeEEEecCCc--ccEEEEEEEcChHHHHHHH
Confidence 578888888884 44455555433 3458999998655554444
No 357
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=27.93 E-value=2.1e+02 Score=26.62 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHhc------CCeEEEEEeccCCCCCccceEEEEeCC
Q 017119 35 QVTEELLWELFVQA------GPVVNVYVPKDRVTNLHQGYGFVEFRS 75 (377)
Q Consensus 35 ~~te~~L~~~f~~~------G~i~~v~i~~~~~~~~~~g~afV~f~~ 75 (377)
..+++++.++|++| |.+...+++.-. ...+||.+..
T Consensus 12 ~~~~~~f~~~le~~~~~~~~G~iv~G~V~~i~-----~~g~~Vdig~ 53 (318)
T PRK07400 12 GFTHEDFAALLDKYDYHFKPGDIVNGTVFSLE-----PRGALIDIGA 53 (318)
T ss_pred CCCHHHHHHHHHhhHhhcCCCCEEEEEEEEEE-----CCEEEEEECC
Confidence 45667788777654 777777765532 2346666643
No 358
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=27.87 E-value=2.4e+02 Score=20.44 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=23.8
Q ss_pred cCCCHHHHHHHHHh-cCC----eEEEEEeccCCCCCccceEEEEeCCHHHHHH
Q 017119 34 PQVTEELLWELFVQ-AGP----VVNVYVPKDRVTNLHQGYGFVEFRSEEDADY 81 (377)
Q Consensus 34 ~~~te~~L~~~f~~-~G~----i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~ 81 (377)
...+..||++.+.. |+. |.-..+......+.+.|||.| |.+.+.+++
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk 62 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKK 62 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHH
Confidence 34667788777664 342 222222223223455666655 777776654
No 359
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=27.73 E-value=2.5e+02 Score=21.85 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=11.6
Q ss_pred eEEEcCCCcCCCHHHHH
Q 017119 26 TAYVGNLDPQVTEELLW 42 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~ 42 (377)
.||||+++...+.+.|+
T Consensus 7 ~l~~G~~~~~~~~~~l~ 23 (138)
T smart00195 7 HLYLGSYSSALNLALLK 23 (138)
T ss_pred CeEECChhHcCCHHHHH
Confidence 59999998766543333
No 360
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=27.65 E-value=63 Score=33.03 Aligned_cols=91 Identities=12% Similarity=0.051 Sum_probs=54.9
Q ss_pred CCCHHHHHHHHHhcCCeEEEEEeccCCC-CCccceEEEEeCCHHHHHHHHH-HhcCcccCCceeEEeecCcCccccCCCC
Q 017119 35 QVTEELLWELFVQAGPVVNVYVPKDRVT-NLHQGYGFVEFRSEEDADYAIK-VLNMIKLYGKPIRVNKASQDKKSLDVGA 112 (377)
Q Consensus 35 ~~te~~L~~~f~~~G~i~~v~i~~~~~~-~~~~g~afV~f~~~e~A~~A~~-~l~~~~~~g~~i~v~~~~~~~~~~~~~~ 112 (377)
.+.-.||++.+.++..|.++.++-..+. .-..-+|||.+++.......+. .|... |+-.. ......+.
T Consensus 507 RigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~~~------VR~~i----gp~a~P~~ 576 (626)
T KOG1175|consen 507 RIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELVKH------VRSVI----GPYAVPRL 576 (626)
T ss_pred eecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHHHH------HHhhc----Ccccccce
Confidence 3677899999999999999888754422 2233478998887644333332 12111 11000 01112234
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhc
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAF 135 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~ 135 (377)
.++|.+|++..+-..++.++.+.
T Consensus 577 I~~v~~LPkTrSGKimRr~lrki 599 (626)
T KOG1175|consen 577 IVFVPGLPKTRSGKIMRRALRKI 599 (626)
T ss_pred eEecCCCCccccchhHHHHHHHH
Confidence 68889999998877777776653
No 361
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=27.63 E-value=4.9e+02 Score=24.08 Aligned_cols=69 Identities=17% Similarity=0.101 Sum_probs=39.2
Q ss_pred CCCccccCCCCeEEEcCCC---cCCCHHHHHHHHHhcCCeEEEEEeccCCC-----C----CccceEEEEeCCHHHHHHH
Q 017119 15 GQHSAERNQDATAYVGNLD---PQVTEELLWELFVQAGPVVNVYVPKDRVT-----N----LHQGYGFVEFRSEEDADYA 82 (377)
Q Consensus 15 ~~~~~~~~~~~~l~v~nLp---~~~te~~L~~~f~~~G~i~~v~i~~~~~~-----~----~~~g~afV~f~~~e~A~~A 82 (377)
+.++-+-.++.+|.+|-+. .+++|.|++ +.++|.-|..--|+-+... + ..+.++|+-|.|.+..+..
T Consensus 28 R~~sf~~~~~~~v~Cgf~~~~gf~i~~~d~~-~m~~c~vvV~saIFG~yD~l~qP~~i~~~s~~~vcf~mF~D~~t~~~l 106 (305)
T PF04765_consen 28 RESSFDIQEDMTVHCGFVKNTGFDISESDRR-YMEKCRVVVYSAIFGNYDKLRQPKNISEYSKKNVCFFMFVDEETLKSL 106 (305)
T ss_pred HHHhcCCCCCceeccccccCCCCCCCHHHHH-HHhcCCEEEEEEecCCCccccCchhhCHHHhcCccEEEEEehhhHHHH
Confidence 3344455667778887765 668887754 4556653322222221111 1 1246899999998776544
Q ss_pred HH
Q 017119 83 IK 84 (377)
Q Consensus 83 ~~ 84 (377)
..
T Consensus 107 ~~ 108 (305)
T PF04765_consen 107 ES 108 (305)
T ss_pred Hh
Confidence 33
No 362
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=27.49 E-value=2.8e+02 Score=29.28 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=35.9
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhc---CCeEEEEEeccCCCCCccceEEE-EeCCH-HHHHHHHHHh
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQA---GPVVNVYVPKDRVTNLHQGYGFV-EFRSE-EDADYAIKVL 86 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~---G~i~~v~i~~~~~~~~~~g~afV-~f~~~-e~A~~A~~~l 86 (377)
..+|.|..||+.+..+.|.+.+.+. +.+..+.-++|.. ....|+-|| ++... .+++..++.|
T Consensus 258 ~~~i~itEiP~~~~~~~~~~~i~~l~~~~~~~~i~~~~d~s-~~~~~~r~~i~~k~~~~~~~~~~~~l 324 (742)
T PRK05561 258 RWQIVITELPYQVSKAKLIEQIAELMNAKKLPGIADVRDES-DRENPVRIVIEPKSNRVDPEALMNHL 324 (742)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCccccccceecc-CCCCCEEEEEEECCCcCCHHHHHHHH
Confidence 5689999999999988887765532 4444455455542 222225554 44333 3344444444
No 363
>TIGR00647 MG103 conserved hypothetical protein.
Probab=27.19 E-value=44 Score=30.38 Aligned_cols=93 Identities=15% Similarity=0.294 Sum_probs=51.6
Q ss_pred HHHHHHHhcCCeEEEEEeccCCCCCccce-EEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCccccCCCCeEEEcC
Q 017119 40 LLWELFVQAGPVVNVYVPKDRVTNLHQGY-GFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGN 118 (377)
Q Consensus 40 ~L~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~V~n 118 (377)
-|+..|-..|.|.+- ..+++| .-+.+.+.+.|+...+.++...+..+.+. ..|||..
T Consensus 101 flrGaFL~~GSv~~P--------~~s~~YHLEi~~~~~~~a~~l~~ll~~f~~~ak~~~--------------~ivYlK~ 158 (279)
T TIGR00647 101 YMIGAFLSGGSVSDL--------EHSSNFHLQISSNNEEQIDQLCKLFNEFKLTSKTLQ--------------LIVYLKS 158 (279)
T ss_pred HHHHHHhCCeecCCC--------CCCCceeEEEEeCCHHHHHHHHHHHHHcCccccccc--------------EEEEECC
Confidence 345555566766432 111233 33667788888877776665433222211 5677764
Q ss_pred CCCcCCHHHHHHHHhhcCCe-----eecceeecCCCCCCCcceEEEEeCC
Q 017119 119 LDPDVDEKLLYDTFSAFGVI-----VTNPKIMRDPDTGNSRGFGFISYDS 163 (377)
Q Consensus 119 l~~~~~~~~l~~~f~~~G~v-----v~~~~i~~d~~~~~~kg~afV~f~~ 163 (377)
-++|.+++.-.|.. ++++++++|..+..+| .|.|++
T Consensus 159 ------~e~I~dfL~~igA~~~~~~~E~~ri~rd~rn~vNR---~~N~e~ 199 (279)
T TIGR00647 159 ------YEKICEFLKLIGAFDGYLAFEDVQLVKDFRLSQNR---KSNLET 199 (279)
T ss_pred ------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHhhhhh---hhhHHH
Confidence 36677777666643 3456677776666665 355544
No 364
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=26.98 E-value=1.2e+02 Score=29.46 Aligned_cols=59 Identities=17% Similarity=0.174 Sum_probs=35.1
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHh---cCCeEEEEEeccCCCCCccceEE-EEeCCHHHHHHHHHHhc
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQ---AGPVVNVYVPKDRVTNLHQGYGF-VEFRSEEDADYAIKVLN 87 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~---~G~i~~v~i~~~~~~~~~~g~af-V~f~~~e~A~~A~~~l~ 87 (377)
++|.|.-||..+.-+++.+.+.+ -|.|. |.-++|. ++. +.-| |++....+++..++.|.
T Consensus 217 ~~i~ITELP~~~~t~~~~e~i~~l~~~~~i~-I~d~~D~-Sd~--~v~ivI~lk~~~~~~~~~~~L~ 279 (426)
T PF00521_consen 217 NTIVITELPYGVWTEKYKEKIEELVEDKKIK-ISDYRDE-SDR--GVRIVIELKRGADPEKILEGLY 279 (426)
T ss_dssp EEEEEEE--TT--HHHHHHHHHHHHHTTSST-EEEEEE--BBT--BS-EEEEESTTSHHHHHHHHHH
T ss_pred cEEEEEeCCccccHHHHHHHHHHHhccCcch-hhHHHhc-CCC--ceeEEEEecCCccHHHHHHHHH
Confidence 89999999999988888776664 36666 5555555 333 4545 56776556666666543
No 365
>COG4086 Predicted secreted protein [Function unknown]
Probab=26.45 E-value=3.4e+02 Score=24.64 Aligned_cols=88 Identities=15% Similarity=0.195 Sum_probs=47.0
Q ss_pred CCcCCCHHHHHHHHHhcCCe-EEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCc-ccCCceeEEeecCcCccccC
Q 017119 32 LDPQVTEELLWELFVQAGPV-VNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMI-KLYGKPIRVNKASQDKKSLD 109 (377)
Q Consensus 32 Lp~~~te~~L~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~-~~~g~~i~v~~~~~~~~~~~ 109 (377)
|-.++++++..++|.++|.- .++.+ ++....|.-+-+ ..+.+. .+..+.+.+...... ...
T Consensus 41 lG~~lse~qk~~~lke~gvd~~s~~~--------------~~Vt~~E~~~y~-~~v~~~~~~~sq~~Sca~Vt~~--~~~ 103 (299)
T COG4086 41 LGEDLSETQKQQLLKEMGVDPDSADT--------------KIVTAEEENEYL-GEVTGRRQIGSQIYSCAKVTPT--EEG 103 (299)
T ss_pred eCccccHHHHHHHHHHhCCCccccee--------------EEEeccchhHHH-Hhhcccccccceeeeeeeeeec--CCC
Confidence 55688999999999999853 22221 112222222222 222222 233333333333222 222
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCC
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGV 137 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~ 137 (377)
.+..|+++||. +++.+.....+-..|.
T Consensus 104 sGl~V~v~nI~-~vt~eMYanAL~TaGi 130 (299)
T COG4086 104 SGLRVEVGNIT-VVTPEMYANALVTAGI 130 (299)
T ss_pred CceEEEeeeEE-EECHHHHHHHHHhcCC
Confidence 35678888776 4667777888777774
No 366
>TIGR01033 DNA-binding regulatory protein, YebC/PmpR family. This model describes a minimally characterized protein family, restricted to bacteria excepting for some eukaryotic sequences that have possible transit peptides. YebC from E. coli is crystallized, and PA0964 from Pseudomonas aeruginosa has been shown to be a sequence-specific DNA-binding regulatory protein.
Probab=26.35 E-value=4.6e+02 Score=23.25 Aligned_cols=43 Identities=21% Similarity=0.151 Sum_probs=26.8
Q ss_pred CeEEEcCCCcC--CCHHHHHHHHHhcCCe----EEEEEeccCCCCCccceEEEEeC
Q 017119 25 ATAYVGNLDPQ--VTEELLWELFVQAGPV----VNVYVPKDRVTNLHQGYGFVEFR 74 (377)
Q Consensus 25 ~~l~v~nLp~~--~te~~L~~~f~~~G~i----~~v~i~~~~~~~~~~g~afV~f~ 74 (377)
..|+|--|..+ =|..+|+.+|.++|-. -++.++.++ .|+|+|.
T Consensus 95 vaiiVe~lTDN~nRt~~~ir~~f~K~gg~l~~~gsv~~~Fe~-------kG~i~~~ 143 (238)
T TIGR01033 95 VAIIVECLTDNKNRTASEVRSAFNKNGGSLGEPGSVSYLFSR-------KGVIEVP 143 (238)
T ss_pred eEEEEEEecCCHHhHHHHHHHHHHHcCCeeCCCCceeeeeec-------ceEEEEC
Confidence 34555555443 4677999999998752 235554443 4667775
No 367
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.16 E-value=1.7e+02 Score=23.56 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=36.1
Q ss_pred CCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHc
Q 017119 118 NLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175 (377)
Q Consensus 118 nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~ 175 (377)
.|...+.++.|.++.+-.|.|++.. -.| -.+.|.|.+...+|++.+.
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~--E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE--EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee--ecc---------EEEEeccHHHHHHHHHHHH
Confidence 4677788899999999999886431 111 3578999999999998763
No 368
>COG5362 Phage-related terminase [General function prediction only]
Probab=25.76 E-value=3.7e+02 Score=22.52 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=22.2
Q ss_pred EEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 71 VEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 71 V~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
+.-+...+-+..+..|..+.+.|+.++++.+-
T Consensus 104 ~~iEpkaaGk~~~q~Lk~~~~~g~~~r~epsg 135 (202)
T COG5362 104 VLIEPKAAGKQLIQDLKFLGGNGRVIRIEPSG 135 (202)
T ss_pred eecCCccccHHHHHHHhhcceeeEEEeeccCC
Confidence 44444455566667777778889999888773
No 369
>PF14350 Beta_protein: Beta protein
Probab=25.63 E-value=3.9e+02 Score=24.99 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=16.4
Q ss_pred CCHHHHHHHHhhcCCeeecceeecC
Q 017119 123 VDEKLLYDTFSAFGVIVTNPKIMRD 147 (377)
Q Consensus 123 ~~~~~l~~~f~~~G~vv~~~~i~~d 147 (377)
...++|.+++...+....++.|+.|
T Consensus 137 ~~~~~i~~i~~~l~~~~~~~~lilD 161 (347)
T PF14350_consen 137 DFPSEISRILAALGLSPNEVDLILD 161 (347)
T ss_pred hHHHHHHHHHHHcCCCccceEEEEE
Confidence 3456788888877733456677766
No 370
>PF11181 YflT: Heat induced stress protein YflT
Probab=25.62 E-value=69 Score=24.11 Aligned_cols=30 Identities=27% Similarity=0.155 Sum_probs=24.8
Q ss_pred EEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 71 VEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 71 V~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
-.|.+.++|..+++.|...-+....|.|-.
T Consensus 4 gv~~~~~E~~~~I~~L~~~Gy~~ddI~Vva 33 (103)
T PF11181_consen 4 GVYDNEEEALSAIEELKAQGYSEDDIYVVA 33 (103)
T ss_pred EEECCHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 368999999999999988777777787754
No 371
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=25.48 E-value=1.9e+02 Score=18.44 Aligned_cols=44 Identities=9% Similarity=0.116 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHH
Q 017119 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171 (377)
Q Consensus 125 ~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~ 171 (377)
-.++.++|.+.|.-+..+.+... ...++...+.+++.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~---~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAET---RGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEc---cCCcEEEEEEECCHHHHHHHh
Confidence 45677788887765555554432 235566778888877777665
No 372
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=25.33 E-value=76 Score=21.66 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEE
Q 017119 36 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFV 71 (377)
Q Consensus 36 ~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV 71 (377)
.-|.+|.++|-.--.|+++.+..++ ...+|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKK--ri~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKK--RIRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEE--eeeCCceeE
Confidence 3455677777776789999887765 334566666
No 373
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=25.06 E-value=83 Score=23.45 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=17.1
Q ss_pred ccceEEEEeCCHHHHHHHHHHh
Q 017119 65 HQGYGFVEFRSEEDADYAIKVL 86 (377)
Q Consensus 65 ~~g~afV~f~~~e~A~~A~~~l 86 (377)
---|.+++|.+.++...+...+
T Consensus 65 ~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 65 EVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEEcCchhHHHHHHHHh
Confidence 3458899999999888887643
No 374
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=24.95 E-value=1.9e+02 Score=24.90 Aligned_cols=57 Identities=26% Similarity=0.229 Sum_probs=0.0
Q ss_pred cCCCHHHHHHH---HHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC
Q 017119 34 PQVTEELLWEL---FVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY 92 (377)
Q Consensus 34 ~~~te~~L~~~---f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~ 92 (377)
.++++++|++| ..+|| ....++.|..++..+-..|+.=.|.+....|++.+....+.
T Consensus 37 i~i~~~~lk~F~k~AkKyG--V~yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~ 96 (204)
T PF12687_consen 37 IEITDEDLKEFKKEAKKYG--VDYAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLK 96 (204)
T ss_pred EecCHhhHHHHHHHHHHcC--CceEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhh
No 375
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=24.90 E-value=1.5e+02 Score=26.60 Aligned_cols=42 Identities=19% Similarity=0.172 Sum_probs=28.0
Q ss_pred CCceeEEeecCcCccccC----CCCeEEEcCCCCcCCHHHHHHHHh
Q 017119 92 YGKPIRVNKASQDKKSLD----VGANLFIGNLDPDVDEKLLYDTFS 133 (377)
Q Consensus 92 ~g~~i~v~~~~~~~~~~~----~~~~l~V~nl~~~~~~~~l~~~f~ 133 (377)
....+.+-..+.-+.... ....++|+||++.++..-|.+++.
T Consensus 74 ~~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 74 SNPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp TCSSEEEEES-TTTSCGGGHCSSSEEEEEEEETGTGHHHHHHHHHH
T ss_pred hcccceeeecchhccccHHhhcCCceEEEEEecccchHHHHHHHhh
Confidence 344555555444432222 355789999999999999998887
No 376
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=24.86 E-value=2.5e+02 Score=27.50 Aligned_cols=64 Identities=19% Similarity=0.140 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHhc--CCeEEEEEe-ccCCCCCccceEEEEeCCHHH--HHHHHHHhcC----cccCCceeEEee
Q 017119 36 VTEELLWELFVQA--GPVVNVYVP-KDRVTNLHQGYGFVEFRSEED--ADYAIKVLNM----IKLYGKPIRVNK 100 (377)
Q Consensus 36 ~te~~L~~~f~~~--G~i~~v~i~-~~~~~~~~~g~afV~f~~~e~--A~~A~~~l~~----~~~~g~~i~v~~ 100 (377)
.....|.+++..| |.|..+++- .|..++ ...|.||.+.-+.. +++|...-+. ..|.|..+.++-
T Consensus 46 s~~~~~~e~~~df~~~kv~yg~~rv~D~~s~-l~KfvLI~W~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~A 118 (484)
T KOG3655|consen 46 SGEGGLEEFLGDFDSGKVMYGFCRVKDPMSG-LPKFVLINWIGEGVPVLRKAKCATHKALVKNFLKGFHVEINA 118 (484)
T ss_pred cccccHHHHhhhcccCceeEEEEEecCcccC-CcceEEEEecCCccHHHhhhhhcchHHHHHHHhhcceEEEec
Confidence 3455667777666 455555543 333333 44599999987665 6666553332 234455555543
No 377
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=24.79 E-value=3.9e+02 Score=21.91 Aligned_cols=67 Identities=12% Similarity=0.113 Sum_probs=42.5
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcC--CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAG--PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~ 90 (377)
...+|.||.+-. ++-+|-.+.....| .|.++.+..-.-.+.|...--+.+.++++-++|++.++...
T Consensus 87 ~~~vvLIGhiv~-tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~~e~l~ea~~~l~ev~ 155 (170)
T COG2061 87 KTDVVLIGHIVH-TDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVGKEKLDEALRRLKEVA 155 (170)
T ss_pred eEeEEEEEeeec-CcHHHHHHHhhccCCEEEEEEEeecCCCCCCcceeEEEEEcChhHHHHHHHHHHHHH
Confidence 445677776633 33333344444555 57777776655556666666677778999999998776543
No 378
>PF13575 DUF4135: Domain of unknown function (DUF4135)
Probab=24.76 E-value=1.6e+02 Score=27.99 Aligned_cols=99 Identities=19% Similarity=0.155 Sum_probs=49.0
Q ss_pred HHHHHHHHHh--cCCeEEEEEeccCCCCCccceEEEEeCCH---------HHHHHHH----HHhcCcccC-CceeEEeec
Q 017119 38 EELLWELFVQ--AGPVVNVYVPKDRVTNLHQGYGFVEFRSE---------EDADYAI----KVLNMIKLY-GKPIRVNKA 101 (377)
Q Consensus 38 e~~L~~~f~~--~G~i~~v~i~~~~~~~~~~g~afV~f~~~---------e~A~~A~----~~l~~~~~~-g~~i~v~~~ 101 (377)
..+|.+.|.. .+.|++|.+-....+...+..+.|+|.+. -..+.++ +.++..... ...+.+-..
T Consensus 30 ~~~l~~~f~~~~~~~i~~I~~~~GD~H~~Gr~V~~l~f~~g~kivYKPRsl~~d~~f~~l~~~ln~~~~~~~~~l~~~~~ 109 (370)
T PF13575_consen 30 RSELREEFGIGSPGKITSIEFGLGDTHNGGRSVAILEFSSGKKIVYKPRSLSIDKAFNDLLEWLNEKNGTPSLDLPTPKV 109 (370)
T ss_pred HHHHHHHhCCCCCCCceEecCCCCCcCCCCceEEEEEECCCCEEEEeCcccHHHHHHHHHHHHHhhhcccccccccccee
Confidence 3445555532 27889988744333344577899999764 2233333 323332110 011111000
Q ss_pred CcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCee
Q 017119 102 SQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139 (377)
Q Consensus 102 ~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv 139 (377)
-.. ....+..=||.+.+-. +++++.+++.++|.++
T Consensus 110 l~~--g~~YgW~EfI~~~~c~-~~~ev~~yY~r~G~ll 144 (370)
T PF13575_consen 110 LDR--GDGYGWQEFIEHEPCN-SEEEVERYYYRLGVLL 144 (370)
T ss_pred eec--cCcceeEEEecCCCCC-CHHHHHHHHHHHHHHH
Confidence 000 0012233455544433 6789999999998763
No 379
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=24.73 E-value=1.4e+02 Score=29.48 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=38.6
Q ss_pred CCCeEEEcCCCcCCCH-HHHHHHHHhcCCeEEEEEeccCCCCCccceEE-EEeCCHHHHH
Q 017119 23 QDATAYVGNLDPQVTE-ELLWELFVQAGPVVNVYVPKDRVTNLHQGYGF-VEFRSEEDAD 80 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te-~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~af-V~f~~~e~A~ 80 (377)
..-.||+|-.|-+.++ ++|++.+++. .+.+..+....++....|||| +-|-..=..+
T Consensus 296 ~~P~Vf~GlyPid~~dye~LrdAleKL-~LNDasl~~E~EtS~ALGfGfRcGFLGlLHme 354 (603)
T COG0481 296 VKPMVFAGLYPVDSDDYEDLRDALEKL-QLNDASLTYEPETSQALGFGFRCGFLGLLHME 354 (603)
T ss_pred CCceEEEeecccChhHHHHHHHHHHhc-ccccceeeeccccchhccCceeehhhhHHHHH
Confidence 4557999988877554 6789998886 566777776777776777766 3444443333
No 380
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=24.70 E-value=1.9e+02 Score=26.01 Aligned_cols=27 Identities=11% Similarity=0.209 Sum_probs=22.3
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCC
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGV 137 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~ 137 (377)
.....|+||+|+++..-|..+++..-.
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~ 121 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFI 121 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCc
Confidence 457889999999999999988876543
No 381
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=24.42 E-value=1.3e+02 Score=21.76 Aligned_cols=66 Identities=18% Similarity=0.304 Sum_probs=22.6
Q ss_pred eEEEcCCCcCCCHHHHHHH-HHhcCCeEEEEEeccCCCCCccceEEEEeCCH----HHHHHHHHHhcCcccCCceeEEe
Q 017119 26 TAYVGNLDPQVTEELLWEL-FVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE----EDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~-f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~----e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
.+.+++|..+- ....++ +++-..|.+++| ++.. ..|||.|... +...++++.+....+..+.|.+.
T Consensus 2 ~lkfg~It~ee--A~~~QYeLsk~~~vyRvFi-----NgYa-r~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTve 72 (88)
T PF11491_consen 2 DLKFGNITPEE--AMVKQYELSKNEAVYRVFI-----NGYA-RNGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVE 72 (88)
T ss_dssp EEE--S-TTTT--THHHHHTTTTTTTB-----------TTS-S--EEE--B-S-SHHHH---HHHTTT-SS-------S
T ss_pred ccccCCCCHHH--HHHHHHHhhcccceeeeee-----cccc-cceEEEECcccCCHHHHHHHHHhcChhheeeccccHH
Confidence 35556664432 233333 556667888877 3333 3689999854 55666677677666666666553
No 382
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=24.39 E-value=63 Score=30.09 Aligned_cols=148 Identities=10% Similarity=0.043 Sum_probs=0.0
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCC-eEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec-C
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA-S 102 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~-~ 102 (377)
++.||++|-.+.--++|.+.++++|. +..++...+. ..++++|... .+--.+++. +.|....+... .
T Consensus 62 ~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~----~T~~a~i~v~-~dG~~~~~~------v~gan~~~~~~~s 130 (330)
T KOG2855|consen 62 RVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENA----RTACATITVS-KDGENRIIF------VRGANADMLPEDS 130 (330)
T ss_pred ceeeeecccchhhHHHHHHHHhhCCcccccceecCCC----ceEEEEEEEc-cCCceEEEE------EecCchhcCcccc
Q ss_pred cCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCe
Q 017119 103 QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNR 182 (377)
Q Consensus 103 ~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~ 182 (377)
+...+.....++++-++..........-.+.. ..++...--+.-..-+..-...=+.-.++..+.......+...+...
T Consensus 131 e~~~~~i~~ak~~~~q~ei~~~~~~~s~~~~~-~~~~~~~g~~i~~~pn~~l~l~~~~~~ne~e~~~i~~~adv~~~s~~ 209 (330)
T KOG2855|consen 131 ELNLEVIKEAKVFHCQSEILIEEPMRSLHIAA-VKVAKNAGPAIFYDPNLRLPLWDSLEENESEIASIWNMADVIKVSSQ 209 (330)
T ss_pred cccHHHHhhccEEEEeeecCCcchhHHHHHhh-hhhhhcccccccCCCCccccccccccccHHHHHHHhhhhhcccccHH
Q ss_pred ee
Q 017119 183 QI 184 (377)
Q Consensus 183 ~l 184 (377)
.+
T Consensus 210 e~ 211 (330)
T KOG2855|consen 210 EL 211 (330)
T ss_pred HH
No 383
>PF12392 DUF3656: Collagenase ; InterPro: IPR020988 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This domain is found in a number of proteins belonging to the MEROPS peptidase family U32. Peptidase family U32 contains endopeptidases, including collagenase, from bacteria.
Probab=24.32 E-value=1.4e+02 Score=23.12 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=31.0
Q ss_pred CCCcCCHHHHHHHHhhcCCe---eecceeecCCCCCCCcceEEEEeCCHHHHH-HHHHHHcC
Q 017119 119 LDPDVDEKLLYDTFSAFGVI---VTNPKIMRDPDTGNSRGFGFISYDSFEASD-AAIEAMNG 176 (377)
Q Consensus 119 l~~~~~~~~l~~~f~~~G~v---v~~~~i~~d~~~~~~kg~afV~f~~~~~A~-~a~~~l~~ 176 (377)
....+++++|++.|++.|.. +.++.+-.+ +-.||-+......+ +|+++|..
T Consensus 62 ~~~p~~~e~i~~ql~KlG~T~F~~~~i~i~~~-------~~lFlP~s~LN~lRRea~e~L~~ 116 (122)
T PF12392_consen 62 KKRPLDEERIRKQLSKLGNTPFELENIEIDLD-------EGLFLPISELNELRREAVEKLEE 116 (122)
T ss_pred CCCccCHHHHHHHHHhhCCCcEEEEEEEEEcC-------CCEEEEHHHHHHHHHHHHHHHHH
Confidence 34557899999999999976 222222211 23677776655543 35555544
No 384
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=24.24 E-value=2.5e+02 Score=19.49 Aligned_cols=63 Identities=13% Similarity=0.060 Sum_probs=40.4
Q ss_pred EEEcCCCcCCCHHHHHHHHHhcC-CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCc
Q 017119 27 AYVGNLDPQVTEELLWELFVQAG-PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMI 89 (377)
Q Consensus 27 l~v~nLp~~~te~~L~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~ 89 (377)
|.|......---.+|.+.+.+.| .|.++.+......+......-|+..+.++-...++.|.+.
T Consensus 9 l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i 72 (80)
T PF13291_consen 9 LRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQI 72 (80)
T ss_dssp EEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTS
T ss_pred EEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCC
Confidence 34433333334457777887776 4777777664324455556667888999999999988765
No 385
>PRK00110 hypothetical protein; Validated
Probab=24.23 E-value=5.2e+02 Score=23.08 Aligned_cols=44 Identities=20% Similarity=0.196 Sum_probs=27.1
Q ss_pred CCeEEEcCCCcC--CCHHHHHHHHHhcCC-e---EEEEEeccCCCCCccceEEEEeC
Q 017119 24 DATAYVGNLDPQ--VTEELLWELFVQAGP-V---VNVYVPKDRVTNLHQGYGFVEFR 74 (377)
Q Consensus 24 ~~~l~v~nLp~~--~te~~L~~~f~~~G~-i---~~v~i~~~~~~~~~~g~afV~f~ 74 (377)
...|+|--|..+ =|..+|+.+|.++|- + -+|.++.++ .|.|+|.
T Consensus 94 GvaiiVe~lTDN~nRt~~~vR~~f~K~gG~l~~~Gsv~~~Fe~-------kG~i~~~ 143 (245)
T PRK00110 94 GVAIIVEALTDNRNRTAAEVRHAFSKNGGNLGETGSVSYMFDR-------KGVIVIE 143 (245)
T ss_pred CeEEEEEEecCCHHHHHHHHHHHHHhcCceeCCCcceEEEecc-------ceEEEeC
Confidence 345555555443 467799999999864 2 235555543 4667775
No 386
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.08 E-value=2.3e+02 Score=18.92 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=30.7
Q ss_pred CHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcC
Q 017119 124 DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176 (377)
Q Consensus 124 ~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~ 176 (377)
.-.+|.++|.++|.-+..+....... + ..+...+.+...++.+++++.|..
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~-~-~~~~~~i~v~~~~~~~~~~~~L~~ 64 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIRE-G-IGGILRISFKTQEDRERAKEILKE 64 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeec-C-CcEEEEEEECCHHHHHHHHHHHHH
Confidence 45678888988886655444333211 1 244556777665677777776654
No 387
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=24.00 E-value=1.7e+02 Score=21.42 Aligned_cols=51 Identities=20% Similarity=0.152 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeC--CHHHHHHHHHHhcCc
Q 017119 39 ELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR--SEEDADYAIKVLNMI 89 (377)
Q Consensus 39 ~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~--~~e~A~~A~~~l~~~ 89 (377)
..|+++++.++...+|..+.-+.++...+.++|-|. +.++.+..++.|+..
T Consensus 22 Gal~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 22 GALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp THCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTSS
T ss_pred cHHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHHc
Confidence 357888888877555555555555667777777555 445556666666553
No 388
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=23.99 E-value=41 Score=31.86 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=46.6
Q ss_pred CCeEEEcCCCCcCCHH--------HHHHHHhh--cCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHH
Q 017119 111 GANLFIGNLDPDVDEK--------LLYDTFSA--FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~--------~l~~~f~~--~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~ 172 (377)
.+.+|+.++....+.+ ++...|.. .+.+ ..+...+|..+..++|-.|++|...+.|+++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~-~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPP-SQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCCh-hhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3467877777655444 88888888 4444 566777777778888889999999999999884
No 389
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.79 E-value=2.2e+02 Score=18.70 Aligned_cols=53 Identities=13% Similarity=0.021 Sum_probs=28.1
Q ss_pred CHHHHHHHHhhcCCeeecceeecCCC---CCCCcceEEEEeCCHHHHHHHHHHHcC
Q 017119 124 DEKLLYDTFSAFGVIVTNPKIMRDPD---TGNSRGFGFISYDSFEASDAAIEAMNG 176 (377)
Q Consensus 124 ~~~~l~~~f~~~G~vv~~~~i~~d~~---~~~~kg~afV~f~~~~~A~~a~~~l~~ 176 (377)
.-.+|.+.+.++|.-+..+....+.. .+...-+.-|+..+.++.+..++.|..
T Consensus 11 ~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~ 66 (73)
T cd04886 11 QLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE 66 (73)
T ss_pred hHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 34677888888876655554443321 111111122444555666677776654
No 390
>PHA00742 hypothetical protein
Probab=23.79 E-value=62 Score=26.74 Aligned_cols=26 Identities=23% Similarity=0.370 Sum_probs=21.1
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccC
Q 017119 67 GYGFVEFRSEEDADYAIKVLNMIKLY 92 (377)
Q Consensus 67 g~afV~f~~~e~A~~A~~~l~~~~~~ 92 (377)
..-||.|.|.|+.-+|+.+|+-..+.
T Consensus 133 Rv~FihynD~EDKlk~isALqilNL~ 158 (211)
T PHA00742 133 RVWFIHYNDTEDKLKCISALQILNLE 158 (211)
T ss_pred eEEEEEecChhHhhhhhHHHHHhhhh
Confidence 46799999999999999888755544
No 391
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=23.64 E-value=1.7e+02 Score=28.91 Aligned_cols=64 Identities=9% Similarity=0.024 Sum_probs=42.0
Q ss_pred HHHHHHHhhcCCeeecc---eeecCCCC----CCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 126 KLLYDTFSAFGVIVTNP---KIMRDPDT----GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 126 ~~l~~~f~~~G~vv~~~---~i~~d~~~----~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..|.+.++.+|..+.++ ++.....+ ..-..|-+|.|.+.+..+..++.|....++-|.+.++++
T Consensus 264 ~~l~~~L~~~GA~v~~~P~i~~~~~~~~~~~l~~l~~ydwlvFTS~ngV~~Ff~~l~~~~~D~R~l~~kia 334 (474)
T PRK07168 264 SVMKQKLQEAGAEIYQIPTFKKEEYTLTLEQINEIFNVNRLVFCSAESVEILMQSCSKYKKDIRSLQAELQ 334 (474)
T ss_pred HHHHHHHHHcCCEEEEeccEEeeCCCCcHHHHHHhccCCEEEEcCHHHHHHHHHHHHHcCCChHHhCCEEE
Confidence 57888888888753332 21111001 112357899999999999999999887777666654444
No 392
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=23.36 E-value=2.7e+02 Score=23.26 Aligned_cols=66 Identities=21% Similarity=0.251 Sum_probs=41.0
Q ss_pred CCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCcee-------cCeeeEEeeeeecC
Q 017119 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL-------CNRQITVSYAYKKD 193 (377)
Q Consensus 123 ~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~-------~g~~l~v~~a~~~~ 193 (377)
.+.+||.++...+|.-+ +++. .++.-.|.+-+...+.++..+|.+.+....+ ..+.+.|-.++..+
T Consensus 15 ~~~~~l~~a~~~iG~P~----vlK~-~~~GYDGkGq~~i~~~~dl~~a~~~~~~~~~ilE~~v~f~~EiSvivaR~~~ 87 (172)
T PF02222_consen 15 DSLEDLEEAAESIGFPA----VLKT-RRGGYDGKGQFVIRSEEDLEKAWQELGGGPCILEEFVPFDREISVIVARDQD 87 (172)
T ss_dssp SSHHHHHHHHHHHTSSE----EEEE-SSSSCTTTTEEEESSGGGHHHHHHHTTTSCEEEEE---ESEEEEEEEEEETT
T ss_pred CCHHHHHHHHHHcCCCE----EEEc-cCcCcCCCccEEECCHHHHHHHHHhcCCCcEEEEeccCCcEEEEEEEEEcCC
Confidence 45689999999988541 2221 1223334455677899999999998843321 34666666665443
No 393
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=23.35 E-value=2.5e+02 Score=19.20 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=29.9
Q ss_pred CCHHHHHHHHhhcCCeeecceeecCCCCC-CCcceEEEEeCC---HHHHHHHHHHHcC
Q 017119 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTG-NSRGFGFISYDS---FEASDAAIEAMNG 176 (377)
Q Consensus 123 ~~~~~l~~~f~~~G~vv~~~~i~~d~~~~-~~kg~afV~f~~---~~~A~~a~~~l~~ 176 (377)
-.-.++.+.|..+|.-+..+ ......+ ...-.-||+++. ....+.+++.|..
T Consensus 11 G~L~~vL~~f~~~~vni~~I--~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 11 GALAKALKVFAERGINLTKI--ESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred CHHHHHHHHHHHCCCCEEEE--EeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 34578888999998654433 2211222 222235677764 5566677777654
No 394
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=23.33 E-value=31 Score=23.87 Aligned_cols=27 Identities=4% Similarity=0.051 Sum_probs=20.5
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhc
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQA 48 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~ 48 (377)
..+++||||+||..+-++.=..++..+
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k~~ 51 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYKSL 51 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHHHH
Confidence 468899999999988777655555543
No 395
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.19 E-value=81 Score=30.34 Aligned_cols=97 Identities=12% Similarity=0.161 Sum_probs=54.8
Q ss_pred eCCHHHHHHHHHHhcCcccCCceeEEeecCcCccccCCCCeEEE-cCC-------CCcCCHHHHHHHHhhcCCeeeccee
Q 017119 73 FRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFI-GNL-------DPDVDEKLLYDTFSAFGVIVTNPKI 144 (377)
Q Consensus 73 f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~V-~nl-------~~~~~~~~l~~~f~~~G~vv~~~~i 144 (377)
|...++-.+|.. -++....|-.|+.... ..|.| |.. -+.+-.|||.+++-.+-.|.....+
T Consensus 400 yrap~HNa~aF~-a~GFYrsGD~V~~~~d----------Gyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlV 468 (542)
T COG1021 400 YRAPEHNARAFD-ADGFYRSGDLVRRDPD----------GYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALV 468 (542)
T ss_pred ccCchhhhhccC-cCCceecCceeEecCC----------ceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhh
Confidence 556666666665 5666655555554321 12222 222 2345568898888877766433233
Q ss_pred -ecCCCCCCCcceEEEEeCCH-HHHHHHHHHHcCceecC
Q 017119 145 -MRDPDTGNSRGFGFISYDSF-EASDAAIEAMNGQYLCN 181 (377)
Q Consensus 145 -~~d~~~~~~kg~afV~f~~~-~~A~~a~~~l~~~~~~g 181 (377)
+.| +.-..|.|+||.+... -.+.+....|+..-+..
T Consensus 469 ampD-elLGEksCAfiv~~~~~~~~~qlr~~L~~~GlAa 506 (542)
T COG1021 469 AMPD-ELLGEKSCAFIVVKEPPLRAAQLRRFLRERGLAA 506 (542)
T ss_pred cCch-hhcCcceeEEEEecCCCCCHHHHHHHHHHcchhh
Confidence 233 3334577999999887 55666666666554433
No 396
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=23.08 E-value=2.1e+02 Score=23.93 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=35.9
Q ss_pred EEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcc--e-EEEEeCCHH---HHHHHHHHHcCceecCeeeEEe
Q 017119 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRG--F-GFISYDSFE---ASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 114 l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg--~-afV~f~~~~---~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
|.|.-=+..++-++|.++|=+.-+-.. +. ..|..+| | .-|-+.|.+ .|++.++++......++.|.++
T Consensus 60 V~V~yDp~~isy~~LL~~ff~ihDPT~---~n---rQGnD~GtqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~Ivte 133 (174)
T COG0225 60 VEVTYDPKVISYEELLEVFFEIHDPTS---LN---RQGNDRGTQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTE 133 (174)
T ss_pred EEEEeCCccccHHHHHHHHheecCCCC---CC---ccCCcccccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEE
Confidence 334333445677777777754322211 11 1122222 2 223444444 4555666666656667777777
Q ss_pred eeeec
Q 017119 188 YAYKK 192 (377)
Q Consensus 188 ~a~~~ 192 (377)
...-+
T Consensus 134 I~p~~ 138 (174)
T COG0225 134 IEPAK 138 (174)
T ss_pred eeccc
Confidence 65433
No 397
>PRK10927 essential cell division protein FtsN; Provisional
Probab=23.01 E-value=2.4e+02 Score=26.05 Aligned_cols=67 Identities=16% Similarity=0.169 Sum_probs=48.0
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEE---EeCCHHHHHHHHHHhcCcccCCcee
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFV---EFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV---~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
+....|-||-+......+.|+.-+...|--..|. .+ + ++--| =|.+.++|++++..|...-+.++.+
T Consensus 245 ~~~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I~--~~---g---~~~RVrVGPf~sr~eAe~a~~rLk~aGis~ci~ 314 (319)
T PRK10927 245 ERRWMVQCGSFRGAEQAETVRAQLAFEGFDSKIT--TN---N---GWNRVVIGPVKGKENADSTLNRLKMAGHTNCIR 314 (319)
T ss_pred CCcEEEEeCccCCHHHHHHHHHHHHHcCCeeEEc--cC---C---cEEEEEeCCCCCHHHHHHHHHHHHHCCCCceee
Confidence 3567888899988888888999888888555442 11 1 23233 3789999999999998877655543
No 398
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.99 E-value=2.5e+02 Score=23.26 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=37.3
Q ss_pred CCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHc
Q 017119 118 NLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175 (377)
Q Consensus 118 nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~ 175 (377)
+|...+.++.|.++.+-+|.|++. .+. .-.+.|.+.+...+|++.+.
T Consensus 118 ~l~~~i~~erl~ei~E~~gvI~Ef----ee~-------~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 118 KLKKPIQEERLQEISEWHGVIFEF----EED-------DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred ecCccchHHHHHHHHHHhceeEEe----cCC-------cEEEEeccHHHHHHHHHHHH
Confidence 688889999999999999988642 221 24788999999999998753
No 399
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=22.75 E-value=1.7e+02 Score=23.83 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.1
Q ss_pred CcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 153 SRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 153 ~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
..||.||+....+++..+++.+.+.
T Consensus 45 fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 45 LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 6999999999888899999877653
No 400
>PLN02707 Soluble inorganic pyrophosphatase
Probab=22.75 E-value=3e+02 Score=24.91 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=26.7
Q ss_pred HHHHHHHHhhcCCeeecceeecCCCCCCCcceEEE-EeCCHHHHHHHHHHHcC
Q 017119 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFI-SYDSFEASDAAIEAMNG 176 (377)
Q Consensus 125 ~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV-~f~~~~~A~~a~~~l~~ 176 (377)
-++|+++|..|-.. .. ..-+-|+|+ .|.+.+.|.+.|+..+.
T Consensus 207 l~~I~~fF~~YK~~-eG---------K~~n~~~~~~~~~~~~~A~~vI~e~~~ 249 (267)
T PLN02707 207 LTAIRDWFRDYKIP-DG---------KPANKFGLDNKPMDKDYALKVIEETNE 249 (267)
T ss_pred HHHHHHHHHHhcCC-CC---------CceeeccccCCcCCHHHHHHHHHHHHH
Confidence 46788888887533 11 111224443 78899999998876554
No 401
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=22.72 E-value=1.2e+02 Score=21.09 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=36.5
Q ss_pred EEcCCCcCCCHHHHHHHHHhcCCeEEEEEe-ccCCCCCccceEEEEeCC-HHHHHHHHHHhcC
Q 017119 28 YVGNLDPQVTEELLWELFVQAGPVVNVYVP-KDRVTNLHQGYGFVEFRS-EEDADYAIKVLNM 88 (377)
Q Consensus 28 ~v~nLp~~~te~~L~~~f~~~G~i~~v~i~-~~~~~~~~~g~afV~f~~-~e~A~~A~~~l~~ 88 (377)
.|.-.....++..|.++.++||--.++..- .+...+...|.-+|++.. .++.++|++.|..
T Consensus 6 ~l~f~g~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~ 68 (76)
T PF09383_consen 6 RLTFTGNSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLRE 68 (76)
T ss_dssp EEEEESCSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred EEEEcCCCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHH
Confidence 333334567778899999999853333221 122235566778888854 4556788887654
No 402
>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of this protein family are RNA 3'-phosphate cyclase (6.5.1.4), an enzyme whose function is conserved from E. coli to human. The modification this enzyme performs enables certain RNA ligations to occur, although the full biological roll for this enzyme is not fully described. This model separates this enzyme from a related protein, present only in eukaryotes, localized to the nucleolus, and involved in ribosomal modification.
Probab=22.71 E-value=5.3e+02 Score=24.09 Aligned_cols=116 Identities=22% Similarity=0.258 Sum_probs=56.1
Q ss_pred eEEEcC---CCcCCCHHHHHH----HHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC--Ccee
Q 017119 26 TAYVGN---LDPQVTEELLWE----LFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY--GKPI 96 (377)
Q Consensus 26 ~l~v~n---Lp~~~te~~L~~----~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~--g~~i 96 (377)
+|.|.+ .+++-+-+.++. ++++||.-.++++.+.-.. .+|-+-|+|...-. +.++.+.+. |+..
T Consensus 113 ~l~l~GgT~~~~sPsvDy~~~v~lP~l~~~G~~~~l~v~rRG~y--P~GGGeV~~~i~p~-----~~l~~i~l~~~G~i~ 185 (326)
T TIGR03399 113 RVTVSGGTDVPWAPPVDYLRNVFLPLLERMGIRAELELLRRGFY--PRGGGEVRLRVEPV-----KKLKPLELEERGELL 185 (326)
T ss_pred EEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCcC--CCCCEEEEEEEccc-----cCCCceeeecCCceE
Confidence 444444 344445555544 5678998777777665433 34445555543311 012221111 1111
Q ss_pred EEeecCcCccccCCCCeEEEcCCCCcCCHHHHH---HHHhhcCCeeecceeecCCCCCCCcceEEEEeC
Q 017119 97 RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLY---DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYD 162 (377)
Q Consensus 97 ~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~---~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~ 162 (377)
+ .....|+.+++..+.+..+. +.+++++..+ ++.+... +.+.+.|++++.+.
T Consensus 186 ~------------i~g~~~~~~l~~~va~r~~~~a~~~L~~~~~~~-~i~~~~~-~~~~s~G~~i~L~a 240 (326)
T TIGR03399 186 R------------VSGIAHAANLPAHVAERMAKAAREELRKLGLDP-EIEIEVL-DKGLGPGSGIVLWA 240 (326)
T ss_pred E------------EEEEEEEccCCHHHHHHHHHHHHHHHHhhCCCc-eEEEEec-cCCCCCcEEEEEEE
Confidence 1 11257778888877665544 3444444211 1222111 45667777665543
No 403
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=22.41 E-value=2.5e+02 Score=18.72 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=27.4
Q ss_pred CHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 017119 124 DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173 (377)
Q Consensus 124 ~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~ 173 (377)
.-.+|-++|.+.|.-+..+..... +. +++.-+.+++.+.|.++++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~---~~-~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADT---SE-FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEec---CC-CCEEEEEECCHHHHHHHHHH
Confidence 446788888888865555554332 12 45555666665566666553
No 404
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=22.33 E-value=6.4e+02 Score=24.70 Aligned_cols=61 Identities=20% Similarity=0.272 Sum_probs=36.2
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCC-CCCCcceEEEEeCCHHHHHHHHHH
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD-TGNSRGFGFISYDSFEASDAAIEA 173 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~-~~~~kg~afV~f~~~~~A~~a~~~ 173 (377)
-|.+.++...-..+-|++.++++..|-..-.|.++.+ +=.+|..++|.-....+.+..++.
T Consensus 145 GVIlNrVgserH~~llr~Ale~~~gv~vlG~lpr~~~l~lp~RHLGLV~a~E~~~~~~~~~~ 206 (451)
T COG1797 145 GVILNRVGSERHYELLRDALEEYTGVPVLGYLPRDDDLELPSRHLGLVPASERLELEAKLEA 206 (451)
T ss_pred EEEEecCCCHHHHHHHHHHhhhcCCCcEEEEecCCcccCCcccccccccchhhhhHHHHHHH
Confidence 4677777777778889999999754411113444432 233555677766665544444443
No 405
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=22.09 E-value=3e+02 Score=27.69 Aligned_cols=82 Identities=11% Similarity=0.006 Sum_probs=48.8
Q ss_pred CCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCccccC-CCCeEEEcCCCCcCCHHHHHHHHhhcCCeee
Q 017119 62 TNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLD-VGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140 (377)
Q Consensus 62 ~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~-~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~ 140 (377)
...+.+.+-|++++.+. -+ .+.+..++|..+++...+.-.-+.. ...+|++.|.+..-.-..+-.+|..++.-+.
T Consensus 406 ~~~hpNtv~i~l~~~~~---~~-~v~G~s~ggg~~~I~~ing~~v~~~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa 481 (526)
T PRK13581 406 SPDYSNLITVTVTTDDG---ER-SVAGTVFGDGEPRIVEIDGYRVDAKPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIA 481 (526)
T ss_pred CCCCCCEEEEEEEeCCe---EE-EEEEEEecCCceEEEEECCEEEEeeCCceEEEEEeCCcCChhHHHHHHHhhcCCCch
Confidence 34456667777665431 11 1456677777777665555443322 3457888887766666677788888776555
Q ss_pred cceeecC
Q 017119 141 NPKIMRD 147 (377)
Q Consensus 141 ~~~i~~d 147 (377)
..++.+.
T Consensus 482 ~m~~~r~ 488 (526)
T PRK13581 482 GMQLGRR 488 (526)
T ss_pred hcEeccC
Confidence 5555544
No 406
>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes. They lack a conserved catalytic histidine residue required for cyclase activity, so probably do not function as cyclases. They are believed to play a role in ribosomal RNA processing and assembly.
Probab=22.02 E-value=6.2e+02 Score=23.83 Aligned_cols=113 Identities=18% Similarity=0.215 Sum_probs=53.8
Q ss_pred cCCCcCCCHHHHHHH----HHhcCCe---EEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC--CceeEEee
Q 017119 30 GNLDPQVTEELLWEL----FVQAGPV---VNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY--GKPIRVNK 100 (377)
Q Consensus 30 ~nLp~~~te~~L~~~----f~~~G~i---~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~--g~~i~v~~ 100 (377)
+|.+++-+-+.++.. +++||.. .++++.+.. -..+|-+-|.|...- ++.+..+.+. |+..++
T Consensus 118 T~~~~spsvD~~~~v~lP~l~~fG~~~~~~~l~v~rrG--~yP~GgG~V~~~~~~-----~~~l~~i~l~~~G~i~~i-- 188 (341)
T cd00875 118 TNSTGDPSVDSIRTATLPLLKKFGIPDEELELKILKRG--VAPGGGGEVGFRCPV-----RKPLTPHLNDSPGRIKRI-- 188 (341)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHcCCCccceEEEEEecc--CCCCCCEEEEEEecC-----cccccceeeccCCceEEE--
Confidence 345566666666554 6788873 456655443 234455666665221 1112222222 221111
Q ss_pred cCcCccccCCCCeEEEcCCCCcCCHHHHHH---HHhhcCCee-ecceeecCCCCCCCcceEEEEe
Q 017119 101 ASQDKKSLDVGANLFIGNLDPDVDEKLLYD---TFSAFGVIV-TNPKIMRDPDTGNSRGFGFISY 161 (377)
Q Consensus 101 ~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~---~f~~~G~vv-~~~~i~~d~~~~~~kg~afV~f 161 (377)
....|+.+++..+.+..+.. .+++++..+ ..+.+....+.+.+.|++.+.+
T Consensus 189 ----------rG~~~~~~l~~~va~r~~~~a~~~L~~~~~dv~i~~~~~~~~~~~~~~G~gi~L~ 243 (341)
T cd00875 189 ----------RGVAYSTRVSPSIANRMIDAARGVLNPFIPDVYIYTDVRKGDNSGKSPGFGISLV 243 (341)
T ss_pred ----------EEEEEEccCCHHHHHHHHHHHHHHHHhhCCCceEEEEecccccCCCCCCeEEEEE
Confidence 12577888888877666544 344444211 1112221223456667655433
No 407
>PF12007 DUF3501: Protein of unknown function (DUF3501); InterPro: IPR021890 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are about 200 amino acids in length. The structure of protein of unknown function (YP_111841.1) from B. pseudomallei has been solved. ; PDB: 3FJV_B.
Probab=21.91 E-value=2.2e+02 Score=24.34 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCc
Q 017119 36 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMI 89 (377)
Q Consensus 36 ~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~ 89 (377)
..+++|.+.++.|..+.-. .+.-+.--||+|.+.++.+..+..|.|+
T Consensus 64 ~~~~~I~~Ei~aYnpLiP~-------~~~l~ATl~IE~~d~~~r~~~L~~L~Gi 110 (192)
T PF12007_consen 64 FDEEGIQEEIDAYNPLIPD-------GGNLKATLMIEIPDEDERRRELARLVGI 110 (192)
T ss_dssp -SHHHHHHHHHHHGGGS---------SSEEEEEEEE--SSHHHHHHHHHHCTTG
T ss_pred CCHHHHHHHHHHhcccCCC-------CCcEEEEEEEEcCCHHHHHHHHHHhcCc
Confidence 3455566666666543211 1222345789999999999999999876
No 408
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=21.89 E-value=90 Score=18.62 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=15.5
Q ss_pred cCCHHHHHHHHhhcCCee
Q 017119 122 DVDEKLLYDTFSAFGVIV 139 (377)
Q Consensus 122 ~~~~~~l~~~f~~~G~vv 139 (377)
.+++++|++.+..+|.++
T Consensus 3 tWs~~~L~~wL~~~gi~~ 20 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPV 20 (38)
T ss_pred CCCHHHHHHHHHHcCCCC
Confidence 578899999999999764
No 409
>PF06804 Lipoprotein_18: NlpB/DapX lipoprotein; InterPro: IPR010653 This entry consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be non-essential [].; PDB: 2YH6_A 3TGO_D 2YH5_A 2LAF_A 2LAE_A 3SNS_A.
Probab=21.84 E-value=3.1e+02 Score=25.29 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=34.1
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHH
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA 79 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A 79 (377)
.+...+++-+.+++.....|-..+.+.|= .+.|+ ..++|.-||+|...++.
T Consensus 196 ~~g~~~l~~~~~fd~aW~rl~~aL~~~gf-----~V~d~--drs~G~~~v~y~~~~~~ 246 (303)
T PF06804_consen 196 GNGQPALILRAPFDRAWRRLGLALDRLGF-----TVEDR--DRSQGVYYVRYKPPDSE 246 (303)
T ss_dssp TTS-EEEEEES-HHHHHHHHHHHHHHTTE-----EEEEE--ETTTTEEEEEE----HH
T ss_pred CCCceEEEECCcHHHHHHHHHHHHHhCCC-----EEEec--ccccEEEEEEEcCCChh
Confidence 34556788889999999999999999982 11222 56889999999987654
No 410
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=21.59 E-value=3.8e+02 Score=20.52 Aligned_cols=46 Identities=22% Similarity=0.342 Sum_probs=21.2
Q ss_pred cCCHHHHHHHHhh-cCCeeecceeecCCC--CCCCcceEEEE-eCCHHHHH
Q 017119 122 DVDEKLLYDTFSA-FGVIVTNPKIMRDPD--TGNSRGFGFIS-YDSFEASD 168 (377)
Q Consensus 122 ~~~~~~l~~~f~~-~G~vv~~~~i~~d~~--~~~~kg~afV~-f~~~~~A~ 168 (377)
.-+.++|++.+.+ +|.- .+..+++... .|..+.-||+. |+|.+.|.
T Consensus 31 TPSr~evrekla~~l~~d-~e~VvV~~ikt~fG~~~s~g~akIY~s~e~~~ 80 (107)
T COG2004 31 TPSRKEVREKLAAMLGAD-KELVVVDYIKTEFGKGRSKGYAKIYDSVERAK 80 (107)
T ss_pred CCCHHHHHHHHHHHHCCC-cceEEEEehhhhcCCcceeEEEEEECCHHHHH
Confidence 4466777776654 4433 2323333323 34333344443 45555443
No 411
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=21.55 E-value=26 Score=24.10 Aligned_cols=60 Identities=25% Similarity=0.275 Sum_probs=30.6
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEE-EEEeccCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVN-VYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~ 87 (377)
..|.|+.+...-..+.+.+.+...|.-.. +.+.... ... ..-.-.|.+.++|+++++.|.
T Consensus 5 y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~--~~y-rV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 5 YYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGG--PWY-RVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEET--TCE-EEEECCECTCCHHHHHHHHHH
T ss_pred EEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCC--ceE-EEEECCCCCHHHHHHHHHHHh
Confidence 45667766544444445555555554322 2222211 111 122237899999999998887
No 412
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=21.55 E-value=1.9e+02 Score=23.64 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=24.1
Q ss_pred eEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 017119 51 VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNM 88 (377)
Q Consensus 51 i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~ 88 (377)
|.+|.+... ..||.||+....+++..+++.+.+
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 556655332 689999999988888888875543
No 413
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=21.53 E-value=3.2e+02 Score=19.67 Aligned_cols=57 Identities=26% Similarity=0.274 Sum_probs=33.9
Q ss_pred EEEcCCCcCCCHHHHHHHHH-------hcCCeEEEEEeccCCCCC-ccc--eEE-EEeCCHHHHHHHH
Q 017119 27 AYVGNLDPQVTEELLWELFV-------QAGPVVNVYVPKDRVTNL-HQG--YGF-VEFRSEEDADYAI 83 (377)
Q Consensus 27 l~v~nLp~~~te~~L~~~f~-------~~G~i~~v~i~~~~~~~~-~~g--~af-V~f~~~e~A~~A~ 83 (377)
|.+-.|..+++++++.++++ +.-.|.++.+-++..... .++ ++| ++|.+.++-+.-.
T Consensus 4 ivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 4 IVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 33445778888888855443 344577777765553332 233 444 5888887765443
No 414
>PRK10560 hofQ outer membrane porin HofQ; Provisional
Probab=21.51 E-value=6.1e+02 Score=24.23 Aligned_cols=62 Identities=6% Similarity=-0.037 Sum_probs=33.9
Q ss_pred CHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC--HHHHHHHHHHhcCcc--cCCceeEEeec
Q 017119 37 TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS--EEDADYAIKVLNMIK--LYGKPIRVNKA 101 (377)
Q Consensus 37 te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~--~e~A~~A~~~l~~~~--~~g~~i~v~~~ 101 (377)
.+.+|+++|+.++.+....++.+..- +|..-+.+.+ .++|-.++-..++.. ..|..++|...
T Consensus 3 ~~adI~~vl~~la~~~g~NiVidp~V---~G~VTl~~~~V~~~qal~~iL~~~gl~~~~~g~i~~I~p~ 68 (386)
T PRK10560 3 DDVPVAQVLQALAEQEKLNLVVSPDV---SGTVSLHLTDVPWKQALQTVVKSAGLILRQEGNILSVHSQ 68 (386)
T ss_pred cCCCHHHHHHHHHHhcCceEEECCCC---cceEEEEEeCCCHHHHHHHHHHhCCCcEEEeCCEEEEEch
Confidence 45577788877777777777766421 2333344443 344444444455542 33566666443
No 415
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=21.35 E-value=4e+02 Score=25.46 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=44.6
Q ss_pred CCHHHHHHHHhhcC--CeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcC----ceecCeeeEEeeeeec
Q 017119 123 VDEKLLYDTFSAFG--VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG----QYLCNRQITVSYAYKK 192 (377)
Q Consensus 123 ~~~~~l~~~f~~~G--~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~----~~~~g~~l~v~~a~~~ 192 (377)
.+.+++.++..++| .++....+. .-|+.|.=+.-..++.++|..+.+.+-+ ..+.|+.+..-+....
T Consensus 26 ~s~eea~~~a~~lg~~~~VvKaQV~---aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee~ 98 (387)
T COG0045 26 TSPEEAEEAAKELGGGPVVVKAQVH---AGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEA 98 (387)
T ss_pred eCHHHHHHHHHHhCCCcEEEEeeee---ecCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEEec
Confidence 45688888888887 443333443 2345555455556789999999988877 6677777665555544
No 416
>PF15063 TC1: Thyroid cancer protein 1
Probab=21.28 E-value=81 Score=22.28 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=24.1
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCC
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGP 50 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~ 50 (377)
.-.++--+.||=.+++.+.|..+|..-|.
T Consensus 23 t~~RKkasaNIFe~vn~~qlqrLF~~sGD 51 (79)
T PF15063_consen 23 TASRKKASANIFENVNLDQLQRLFQKSGD 51 (79)
T ss_pred hHHhhhhhhhhhhccCHHHHHHHHHHccc
Confidence 45556667888889999999999999986
No 417
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=21.26 E-value=3.8e+02 Score=30.55 Aligned_cols=59 Identities=15% Similarity=0.036 Sum_probs=34.4
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHh--cCCeEEEEEeccCCCCCccceEE-EEeCCHHHHHHHHH
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQ--AGPVVNVYVPKDRVTNLHQGYGF-VEFRSEEDADYAIK 84 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~--~G~i~~v~i~~~~~~~~~~g~af-V~f~~~e~A~~A~~ 84 (377)
..+|.|.-||..+.-+++.+++.+ -..+..|.-++|..+. .+.-| |++.....++...+
T Consensus 885 ~~~i~ITELP~~~~t~~y~e~l~~~~~~~~~~I~d~~d~s~~--~~v~~~I~l~~~~~~~~~~~ 946 (1388)
T PTZ00108 885 DGTVEITELPIGKWTEDYKEFLESETLKEKDVIVDYRDYSTA--NTVHFTVKLNDGVLEQWEEE 946 (1388)
T ss_pred CCeEEEEeCCCcccHHHHHHHHHHHHhcCCCcceeeeeccCC--CceEEEEEECCCcCHHHHHH
Confidence 458999999999999999888776 2222233333343222 24445 45555444444333
No 418
>TIGR01619 hyp_HI0040 conserved hypothetical protein, TIGR01619. This model represents a hypothetical equivalog of gamma proteobacteria, includes HI0040. These sequences do not have any similarity to known proteins by PSI-BLAST.
Probab=20.98 E-value=2.1e+02 Score=25.58 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=32.4
Q ss_pred CHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcC
Q 017119 124 DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176 (377)
Q Consensus 124 ~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~ 176 (377)
..++|.+.+.+.|..++..+.+. -++.|.+++++..+++.+..
T Consensus 141 ~n~~Vl~~L~~~GD~l~~~R~Id----------Hw~yF~~e~d~~~F~e~~~~ 183 (249)
T TIGR01619 141 ATEELLDLLKKKGRDLAALYLIE----------HSFHFDEEAKMFAFMDELHL 183 (249)
T ss_pred HHHHHHHHHHHcCccccCceEee----------eEEecCCHHHHHHHHHHHHh
Confidence 45678888888898754444432 37999999999999998763
No 419
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=20.98 E-value=1.7e+02 Score=21.35 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=19.2
Q ss_pred CeEEEEEeccCCCCCccceEEEEeCC
Q 017119 50 PVVNVYVPKDRVTNLHQGYGFVEFRS 75 (377)
Q Consensus 50 ~i~~v~i~~~~~~~~~~g~afV~f~~ 75 (377)
.|++|+|.+-...|+-+.|+-|+|.+
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~ 27 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDN 27 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecc
Confidence 47888888776667777777777765
No 420
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=20.56 E-value=2.8e+02 Score=26.09 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCcCCHHHHHHHHhhcCCeeec--ceeecCCCCCC-CcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 120 DPDVDEKLLYDTFSAFGVIVTN--PKIMRDPDTGN-SRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 120 ~~~~~~~~l~~~f~~~G~vv~~--~~i~~d~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
.+..+++++++...+.|.-+.. +.-+++-..|. -...--+.|.+.++|++.++.|...
T Consensus 240 E~~~~~~~~~~~~~~lG~ail~p~~~~i~~v~~~~~~~e~~~~r~~~~~~~~~~~~~~~~~ 300 (342)
T cd07894 240 ELGESEEELEERALELGEAILEPLVEAIRKVARGERVYEEFRLRFRSEETAEEFLEHLRRL 300 (342)
T ss_pred HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 3445556777777666653111 11111111222 2222348899999999999988754
No 421
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.46 E-value=5.7e+02 Score=23.45 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=14.1
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhc
Q 017119 26 TAYVGNLDPQVTEELLWELFVQA 48 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~ 48 (377)
.+|+|+|...-.-++|.+.|...
T Consensus 200 il~~g~l~~~K~~~~li~a~~~l 222 (371)
T cd04962 200 LIHISNFRPVKRIDDVIRIFAKV 222 (371)
T ss_pred EEEecccccccCHHHHHHHHHHH
Confidence 55677776666666666655543
No 422
>PF09341 Pcc1: Transcription factor Pcc1; InterPro: IPR015419 Pcc1 is a proposed transcription factor involved in the expression of genes regulated by alpha-factor and galactose; component of the EKC/KEOPS protein complex with Kae1, Gon7, Bud32, and Cgi121; related to human cancer-testis antigens [].; PDB: 2BNR_C 2P5W_C 3KLA_C 2F54_C 2P5E_C 2F53_C 3ENO_E 3ENC_B.
Probab=20.45 E-value=1.4e+02 Score=20.82 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=15.8
Q ss_pred eEEEEeCCHHHHHHHHHHHc
Q 017119 156 FGFISYDSFEASDAAIEAMN 175 (377)
Q Consensus 156 ~afV~f~~~~~A~~a~~~l~ 175 (377)
..-|.|.+.+.|+.+++.|.
T Consensus 4 ~l~i~f~s~~~A~ii~~sL~ 23 (76)
T PF09341_consen 4 TLEIPFESEEKAEIIYRSLK 23 (76)
T ss_dssp EEEEE-SSHHHHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHhC
Confidence 46799999999999988774
No 423
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=20.39 E-value=3.3e+02 Score=26.67 Aligned_cols=56 Identities=16% Similarity=0.272 Sum_probs=33.9
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhc---CCeEEEEEeccCCCCCccceEE-EEeCCHHHHHHHHH
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQA---GPVVNVYVPKDRVTNLHQGYGF-VEFRSEEDADYAIK 84 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~---G~i~~v~i~~~~~~~~~~g~af-V~f~~~e~A~~A~~ 84 (377)
..++|.|.-||..++.+++.+.+.+. |.|..+.- .+ ..+..| |++.....++..++
T Consensus 226 ~~~~i~ItElP~~~~~~~~~~~i~~l~~~~~i~~i~d----s~--~~~v~i~I~lk~~~~~~~~~~ 285 (439)
T PHA02592 226 GKTKLHITEIPVKYDRETYVAVLDPLEEKGKIVSYDD----CT--EDGFRFKVTLKREENEEATHE 285 (439)
T ss_pred CCCEEEEEeCCCcccHHHHHHHHHHHHhcCCcCCccc----CC--CCceEEEEEECCCCCHHHHHH
Confidence 45689999999999988877766543 55555432 11 233444 45665544444443
No 424
>PF05023 Phytochelatin: Phytochelatin synthase; InterPro: IPR007719 This entry represents plant phytochelatin synthases (also known as glutathione gamma-glutamylcysteinyltransferase; 2.3.2.15 from EC), which is involved in the synthesis of phytochelatins (PC) and homophytochelatins (hPC), the heavy-metal-binding peptides of plants. This enzyme is required for detoxification of heavy metals such as cadmium and arsenate. The N-terminal region of phytochelatin synthase contains the active site, as well as four highly conserved cysteine residues that appear to play an important role in heavy-metal-induced phytochelatin catalysis. The C-terminal region is rich in cysteines, and may act as a metal sensor, whereby the Cys residues bind cadmium ions to bring them into closer proximity and transferring them to the activation site in the N-terminal catalytic domain []. The C-terminal region displays homology to the functional domains of metallothionein and metallochaperone.; GO: 0016756 glutathione gamma-glutamylcysteinyltransferase activity, 0046872 metal ion binding, 0010038 response to metal ion, 0046938 phytochelatin biosynthetic process; PDB: 2BTW_A 2BU3_B.
Probab=20.37 E-value=3.8e+02 Score=23.32 Aligned_cols=99 Identities=24% Similarity=0.234 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCcccc------
Q 017119 35 QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSL------ 108 (377)
Q Consensus 35 ~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~------ 108 (377)
-+|-+||..+.+.+|...++....+ .+.++-++.++.. ..-.++.|.|++....-...
T Consensus 96 GiTL~e~~~la~~~g~~~~~~~~~~--------------~s~~~FR~~l~~~--~~~~~~~livnf~R~~lgq~G~GHfS 159 (212)
T PF05023_consen 96 GITLDEFACLAKCNGLRVEVYRADD--------------SSLDEFRQHLKEA--LSDPNDFLIVNFDRKALGQTGGGHFS 159 (212)
T ss_dssp ---HHHHHHHHHTTT-EEEEEEGGG--------------S-HHHHHHHHHHH--CTSTTEEEEEEEEGGGGTSSSSEEEE
T ss_pred CCCHHHHHHHHHhcCCceEEEeCCc--------------CCHHHHHHHHHHH--hCCCCCEEEEECcccccCCCCCCccc
Confidence 4666777778888875444433222 1344444444432 12346788888876442211
Q ss_pred ------CCCCeEEEcC------CCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEE
Q 017119 109 ------DVGANLFIGN------LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFIS 160 (377)
Q Consensus 109 ------~~~~~l~V~n------l~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~ 160 (377)
.....+.|-. -++|+..++|++.+... |..++++|||..|+
T Consensus 160 PigaY~~~tD~vLilDVar~kYpp~WV~~~~L~~AM~~~-----------D~~s~~~RG~~~is 212 (212)
T PF05023_consen 160 PIGAYDAETDRVLILDVARFKYPPYWVPLERLYEAMNTI-----------DPDSGKSRGYLLIS 212 (212)
T ss_dssp EEEEEETTTTEEEE--S-TTT---EEEEHHHHHHHHSSE-----------ETTTTEE-EEEEEE
T ss_pred ccceecccCCeEEEEecccccCCCEEeEHHHHHHHHhcc-----------CCCCCCcceEEEeC
Confidence 1122333322 24466777777666542 33678889887774
No 425
>PRK11633 cell division protein DedD; Provisional
Probab=20.33 E-value=2.3e+02 Score=24.96 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=45.5
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeec-CCCCCCCcceEEE-EeCCHHHHHHHHHHHcCc-eecCeeeE
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMR-DPDTGNSRGFGFI-SYDSFEASDAAIEAMNGQ-YLCNRQIT 185 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~-d~~~~~~kg~afV-~f~~~~~A~~a~~~l~~~-~~~g~~l~ 185 (377)
...|-|+-+.....-+.|++-+..-|.-. ++.. +...|... -.|| -|.+.+.|++++..|+.. .+.|+.+.
T Consensus 149 ~~vVQlgaf~n~~~A~~l~~kL~~~G~~A---y~~~~~~~~G~~t-RV~VGP~~sk~~ae~~~~~Lk~~~Gl~g~Vv~ 222 (226)
T PRK11633 149 AYVVQLGALKNADKVNEIVAKLRLSGYRV---YTVPSTPVQGKIT-RIYVGPDASKDKLKGSLGELKQLSGLSGVVMG 222 (226)
T ss_pred cEEEEecccCCHHHHHHHHHHHHHCCCee---EEEeeecCCCcEE-EEEeCCCCCHHHHHHHHHHHHHhcCCCceEEe
Confidence 35677888887777788888888777542 2211 11222211 1333 477999999999999874 67665543
Done!