Query 017119
Match_columns 377
No_of_seqs 342 out of 2272
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 09:14:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017119.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017119hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 4E-36 1.4E-40 262.9 17.0 169 22-193 13-182 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 1.4E-34 4.6E-39 242.7 20.0 165 25-191 1-166 (166)
3 1b7f_A Protein (SXL-lethal pro 100.0 1.5E-34 5.2E-39 243.1 20.1 165 23-189 2-168 (168)
4 1fxl_A Paraneoplastic encephal 100.0 3E-34 1E-38 240.9 21.2 165 23-189 1-167 (167)
5 1l3k_A Heterogeneous nuclear r 100.0 1.1E-34 3.8E-39 250.3 19.0 176 17-195 6-186 (196)
6 2qfj_A FBP-interacting repress 100.0 2.5E-34 8.6E-39 251.9 20.5 174 19-193 23-206 (216)
7 3nmr_A Cugbp ELAV-like family 100.0 1.7E-33 5.7E-38 238.3 19.4 166 23-190 2-175 (175)
8 2cjk_A Nuclear polyadenylated 100.0 1.9E-34 6.6E-39 242.3 13.2 165 23-192 2-166 (167)
9 2g4b_A Splicing factor U2AF 65 100.0 1.8E-32 6.2E-37 231.3 18.2 160 22-190 2-172 (172)
10 2yh0_A Splicing factor U2AF 65 100.0 2.7E-32 9.3E-37 235.6 18.7 165 22-194 2-196 (198)
11 3pgw_A U1-A; protein-RNA compl 100.0 1.3E-31 4.3E-36 244.5 21.1 164 19-191 4-282 (282)
12 1fje_B Nucleolin RBD12, protei 100.0 1.2E-32 4.1E-37 233.3 12.5 166 19-192 8-174 (175)
13 3tyt_A Heterogeneous nuclear r 100.0 1.6E-31 5.5E-36 231.5 19.2 160 23-189 3-204 (205)
14 3smz_A Protein raver-1, ribonu 100.0 2.1E-31 7.3E-36 243.2 18.5 171 22-194 93-266 (284)
15 2adc_A Polypyrimidine tract-bi 100.0 1.5E-30 5.1E-35 230.1 21.1 164 17-191 27-227 (229)
16 1qm9_A Polypyrimidine tract-bi 100.0 9.9E-31 3.4E-35 226.0 17.4 159 23-192 2-197 (198)
17 2ghp_A U4/U6 snRNA-associated 100.0 1.1E-30 3.8E-35 239.4 17.9 169 21-192 114-291 (292)
18 3sde_A Paraspeckle component 1 100.0 4.1E-30 1.4E-34 231.7 19.3 161 18-193 16-180 (261)
19 3smz_A Protein raver-1, ribonu 100.0 6.7E-30 2.3E-34 233.3 20.7 160 20-194 18-177 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 4.7E-30 1.6E-34 235.3 18.2 168 14-194 31-199 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 1.2E-23 4E-28 174.8 15.7 139 53-194 2-152 (158)
22 2i2y_A Fusion protein consists 99.9 7.3E-22 2.5E-26 162.5 13.1 123 63-192 10-148 (150)
23 4f25_A Polyadenylate-binding p 99.9 3.3E-22 1.1E-26 156.8 10.4 103 23-127 4-113 (115)
24 4fxv_A ELAV-like protein 1; RN 99.8 1.4E-20 4.7E-25 143.2 10.6 82 109-191 17-98 (99)
25 4fxv_A ELAV-like protein 1; RN 99.8 2.6E-20 9E-25 141.6 11.3 82 22-103 17-98 (99)
26 2lea_A Serine/arginine-rich sp 99.8 1.4E-20 4.7E-25 151.7 7.4 126 67-195 5-130 (135)
27 2lkz_A RNA-binding protein 5; 99.8 5E-20 1.7E-24 138.5 9.2 82 110-191 8-94 (95)
28 2lxi_A RNA-binding protein 10; 99.8 3.5E-20 1.2E-24 138.8 7.5 83 24-106 1-85 (91)
29 2do4_A Squamous cell carcinoma 99.8 3.7E-19 1.3E-23 135.7 12.9 91 14-105 7-97 (100)
30 2lxi_A RNA-binding protein 10; 99.8 9.6E-20 3.3E-24 136.3 9.0 84 111-194 1-85 (91)
31 3s8s_A Histone-lysine N-methyl 99.8 2E-19 7E-24 139.3 11.1 84 22-105 4-87 (110)
32 1x5u_A Splicing factor 3B subu 99.8 5.1E-19 1.8E-23 136.2 12.9 94 15-108 6-99 (105)
33 2dgo_A Cytotoxic granule-assoc 99.8 6.3E-19 2.1E-23 138.1 13.2 94 14-107 5-98 (115)
34 3lqv_A PRE-mRNA branch site pr 99.8 2.2E-19 7.5E-24 140.7 10.5 106 21-138 5-110 (115)
35 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2E-19 6.8E-24 150.2 10.7 124 71-195 11-155 (165)
36 3s8s_A Histone-lysine N-methyl 99.8 3.3E-19 1.1E-23 138.1 10.1 82 110-192 5-86 (110)
37 2cqd_A RNA-binding region cont 99.8 9.1E-19 3.1E-23 137.3 12.4 92 14-106 7-98 (116)
38 2cqc_A Arginine/serine-rich sp 99.8 7.3E-19 2.5E-23 132.7 11.4 88 16-103 7-94 (95)
39 1whw_A Hypothetical protein ri 99.8 9.7E-19 3.3E-23 133.1 12.1 88 20-107 4-91 (99)
40 2lkz_A RNA-binding protein 5; 99.8 2E-19 6.8E-24 135.2 8.1 84 20-103 5-94 (95)
41 2cq0_A Eukaryotic translation 99.8 6.2E-19 2.1E-23 135.3 10.9 91 16-106 7-97 (103)
42 2cpz_A CUG triplet repeat RNA- 99.8 8E-19 2.7E-23 137.5 11.7 90 17-106 18-107 (115)
43 2cph_A RNA binding motif prote 99.8 1.4E-18 4.6E-23 134.3 12.7 91 16-106 7-99 (107)
44 2dnm_A SRP46 splicing factor; 99.8 8E-19 2.7E-23 134.6 11.3 91 16-106 5-95 (103)
45 2dgs_A DAZ-associated protein 99.8 1.7E-18 5.9E-23 131.7 12.7 86 20-106 6-91 (99)
46 3bs9_A Nucleolysin TIA-1 isofo 99.8 7.7E-19 2.6E-23 130.3 10.4 83 22-104 4-86 (87)
47 1x5s_A Cold-inducible RNA-bind 99.8 9.6E-19 3.3E-23 133.9 11.2 88 19-106 7-94 (102)
48 1x5t_A Splicing factor 3B subu 99.8 9.4E-19 3.2E-23 132.4 11.1 88 110-198 4-92 (96)
49 2e5h_A Zinc finger CCHC-type a 99.8 1.2E-18 4.2E-23 131.2 11.6 86 17-102 9-94 (94)
50 1x4h_A RNA-binding protein 28; 99.8 2E-18 6.9E-23 134.3 13.1 90 17-106 8-103 (111)
51 2cqb_A Peptidyl-prolyl CIS-tra 99.8 9.3E-19 3.2E-23 134.0 10.8 89 19-107 7-95 (102)
52 2x1f_A MRNA 3'-END-processing 99.8 1.4E-18 4.9E-23 131.4 11.4 82 24-105 2-83 (96)
53 3md1_A Nuclear and cytoplasmic 99.8 1.3E-18 4.5E-23 127.8 10.9 82 24-105 1-82 (83)
54 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.1E-18 3.7E-23 128.9 10.4 82 21-102 4-85 (85)
55 2cq0_A Eukaryotic translation 99.8 8.2E-19 2.8E-23 134.6 10.0 89 106-195 10-98 (103)
56 2dnz_A Probable RNA-binding pr 99.8 1.7E-18 5.9E-23 130.7 11.6 85 22-106 3-87 (95)
57 2dnh_A Bruno-like 5, RNA bindi 99.8 3E-18 1E-22 131.9 13.0 89 18-107 9-100 (105)
58 2kxn_B Transformer-2 protein h 99.8 1E-18 3.5E-23 139.5 10.7 90 16-105 38-127 (129)
59 1p27_B RNA-binding protein 8A; 99.8 1.5E-18 5.2E-23 133.8 11.1 90 16-105 15-104 (106)
60 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.8E-18 6.3E-23 132.3 11.5 87 108-195 9-95 (102)
61 3p5t_L Cleavage and polyadenyl 99.8 3.2E-19 1.1E-23 133.3 7.0 81 25-105 2-84 (90)
62 2khc_A Testis-specific RNP-typ 99.8 9.1E-19 3.1E-23 137.8 9.9 87 16-102 32-118 (118)
63 2d9p_A Polyadenylate-binding p 99.8 2.5E-18 8.4E-23 131.9 12.0 89 16-106 7-95 (103)
64 2dgo_A Cytotoxic granule-assoc 99.8 2.4E-18 8.1E-23 134.8 11.9 88 106-194 10-97 (115)
65 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.5E-18 5E-23 128.8 10.1 82 110-192 5-86 (87)
66 3p5t_L Cleavage and polyadenyl 99.8 4.2E-19 1.4E-23 132.7 7.0 81 112-193 2-84 (90)
67 3md1_A Nuclear and cytoplasmic 99.8 1.7E-18 5.8E-23 127.2 10.2 81 112-193 2-82 (83)
68 2cpz_A CUG triplet repeat RNA- 99.8 2.4E-18 8.2E-23 134.7 11.7 86 108-194 22-107 (115)
69 2dgp_A Bruno-like 4, RNA bindi 99.8 2.2E-18 7.5E-23 132.9 11.3 89 18-106 7-98 (106)
70 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.6E-18 1.9E-22 129.9 13.4 88 17-106 8-95 (103)
71 2fy1_A RNA-binding motif prote 99.8 2.6E-18 9E-23 134.6 11.6 85 20-105 3-87 (116)
72 1x5s_A Cold-inducible RNA-bind 99.8 2.7E-18 9.2E-23 131.4 11.3 86 108-194 9-94 (102)
73 2dnz_A Probable RNA-binding pr 99.8 2.8E-18 9.5E-23 129.5 11.1 85 110-195 4-88 (95)
74 2jrs_A RNA-binding protein 39; 99.8 2.6E-18 8.9E-23 132.8 11.1 89 17-105 19-107 (108)
75 2div_A TRNA selenocysteine ass 99.8 1.7E-18 5.9E-23 131.7 10.0 86 20-105 5-95 (99)
76 1whw_A Hypothetical protein ri 99.8 2.8E-18 9.5E-23 130.6 11.1 85 109-194 6-90 (99)
77 1wi8_A EIF-4B, eukaryotic tran 99.8 3.1E-18 1E-22 131.6 11.3 90 16-107 7-97 (104)
78 1oo0_B CG8781-PA, drosophila Y 99.8 2.6E-18 8.9E-23 133.4 11.0 89 17-105 19-107 (110)
79 1sjq_A Polypyrimidine tract-bi 99.8 2.3E-18 7.8E-23 130.9 10.3 85 18-108 10-96 (105)
80 2hvz_A Splicing factor, argini 99.8 1.3E-18 4.6E-23 132.9 9.1 91 25-120 1-100 (101)
81 2dnm_A SRP46 splicing factor; 99.8 2.1E-18 7.2E-23 132.3 10.2 87 107-194 9-95 (103)
82 2dgs_A DAZ-associated protein 99.8 3.4E-18 1.2E-22 130.1 11.2 85 109-195 8-92 (99)
83 2x1f_A MRNA 3'-END-processing 99.8 2.7E-18 9.2E-23 129.9 10.6 83 111-194 2-84 (96)
84 1x5u_A Splicing factor 3B subu 99.8 2.9E-18 1E-22 131.9 10.9 87 107-194 11-97 (105)
85 2la6_A RNA-binding protein FUS 99.8 4.1E-18 1.4E-22 129.6 11.6 85 18-102 7-99 (99)
86 2cpe_A RNA-binding protein EWS 99.8 4.2E-18 1.4E-22 132.9 11.9 89 107-195 11-106 (113)
87 3ns6_A Eukaryotic translation 99.8 9E-19 3.1E-23 133.5 7.7 85 21-105 3-94 (100)
88 1x5t_A Splicing factor 3B subu 99.8 2.3E-18 7.9E-23 130.2 9.9 85 22-106 3-88 (96)
89 2ywk_A Putative RNA-binding pr 99.8 2.3E-18 8E-23 129.9 9.9 86 17-103 9-94 (95)
90 2cph_A RNA binding motif prote 99.8 4.5E-18 1.6E-22 131.3 11.7 88 107-195 11-100 (107)
91 1u6f_A Tcubp1, RNA-binding pro 99.8 4.2E-18 1.4E-22 138.0 12.0 89 18-106 36-124 (139)
92 2dhg_A TRNA selenocysteine ass 99.8 3.2E-18 1.1E-22 131.5 10.6 88 18-106 3-92 (104)
93 1x4h_A RNA-binding protein 28; 99.8 5.2E-18 1.8E-22 131.9 12.0 87 108-195 12-104 (111)
94 2cq3_A RNA-binding protein 9; 99.8 1.1E-17 3.7E-22 128.3 13.5 90 15-106 6-95 (103)
95 3s7r_A Heterogeneous nuclear r 99.8 3.8E-18 1.3E-22 126.6 10.4 83 18-101 5-87 (87)
96 2m2b_A RNA-binding protein 10; 99.8 1.6E-18 5.6E-23 138.9 9.0 89 17-106 16-110 (131)
97 2cpe_A RNA-binding protein EWS 99.8 3.1E-18 1E-22 133.7 10.4 89 18-106 9-105 (113)
98 2dng_A Eukaryotic translation 99.8 4.1E-18 1.4E-22 130.6 10.9 89 16-106 7-95 (103)
99 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.8E-18 9.7E-23 126.6 9.6 81 109-190 5-85 (85)
100 2dh8_A DAZ-associated protein 99.8 3.3E-18 1.1E-22 131.6 10.2 90 16-106 8-97 (105)
101 2cpf_A RNA binding motif prote 99.8 3E-18 1E-22 130.1 9.8 85 22-106 3-90 (98)
102 2wbr_A GW182, gawky, LD47780P; 99.8 2.4E-18 8.1E-23 124.7 8.7 74 23-102 6-79 (89)
103 3n9u_C Cleavage and polyadenyl 99.8 3.3E-18 1.1E-22 141.0 10.7 83 22-104 53-137 (156)
104 2cq1_A PTB-like protein L; RRM 99.8 8.4E-18 2.9E-22 127.8 12.1 84 18-107 9-94 (101)
105 2cqc_A Arginine/serine-rich sp 99.8 4.2E-18 1.4E-22 128.5 10.4 84 107-191 11-94 (95)
106 4f25_A Polyadenylate-binding p 99.8 2.8E-18 9.5E-23 134.3 9.5 81 111-194 5-85 (115)
107 1p27_B RNA-binding protein 8A; 99.8 4.9E-18 1.7E-22 130.9 10.7 85 108-193 20-104 (106)
108 2dnh_A Bruno-like 5, RNA bindi 99.8 5.7E-18 1.9E-22 130.3 11.0 86 109-196 13-101 (105)
109 2do4_A Squamous cell carcinoma 99.8 5.7E-18 2E-22 129.1 10.9 84 109-194 15-98 (100)
110 2do0_A HnRNP M, heterogeneous 99.8 1.1E-17 3.8E-22 130.7 12.8 88 17-105 8-95 (114)
111 2e5h_A Zinc finger CCHC-type a 99.8 5.7E-18 2E-22 127.5 10.7 81 109-190 14-94 (94)
112 2fy1_A RNA-binding motif prote 99.8 5.4E-18 1.8E-22 132.8 10.9 84 109-194 5-88 (116)
113 2cqg_A TDP-43, TAR DNA-binding 99.7 1.5E-17 5.2E-22 127.4 13.0 88 17-106 8-95 (103)
114 2rs2_A Musashi-1, RNA-binding 99.7 4.1E-18 1.4E-22 131.9 9.9 91 14-105 15-105 (109)
115 3pgw_S U1-70K; protein-RNA com 99.7 6.1E-19 2.1E-23 169.1 6.3 85 109-194 100-184 (437)
116 1oo0_B CG8781-PA, drosophila Y 99.7 7.4E-18 2.5E-22 130.8 11.4 86 108-194 23-108 (110)
117 2dgp_A Bruno-like 4, RNA bindi 99.7 6.1E-18 2.1E-22 130.4 10.7 86 108-194 10-98 (106)
118 2d9p_A Polyadenylate-binding p 99.7 5.6E-18 1.9E-22 129.8 10.3 86 107-195 11-96 (103)
119 1s79_A Lupus LA protein; RRM, 99.7 4.1E-18 1.4E-22 130.3 9.3 82 20-103 7-88 (103)
120 2la6_A RNA-binding protein FUS 99.7 4.3E-18 1.5E-22 129.5 9.4 81 109-190 11-99 (99)
121 2dgx_A KIAA0430 protein; RRM d 99.7 9.8E-18 3.3E-22 126.7 11.3 82 21-105 6-91 (96)
122 2m2b_A RNA-binding protein 10; 99.7 3.3E-18 1.1E-22 137.1 9.1 84 109-193 21-109 (131)
123 1x4a_A Splicing factor, argini 99.7 1.8E-17 6.3E-22 128.3 13.0 88 16-106 14-101 (109)
124 1p1t_A Cleavage stimulation fa 99.7 1.9E-18 6.7E-23 132.7 7.4 85 21-105 5-89 (104)
125 2div_A TRNA selenocysteine ass 99.7 5.2E-18 1.8E-22 129.0 9.6 85 109-193 7-95 (99)
126 3n9u_C Cleavage and polyadenyl 99.7 3.7E-18 1.2E-22 140.7 9.3 84 110-194 54-139 (156)
127 3ex7_B RNA-binding protein 8A; 99.7 7.1E-18 2.4E-22 134.3 10.7 89 17-105 15-103 (126)
128 2err_A Ataxin-2-binding protei 99.7 4.7E-18 1.6E-22 131.7 9.4 89 14-104 19-107 (109)
129 2cqp_A RNA-binding protein 12; 99.7 3.1E-18 1.1E-22 130.1 8.2 85 20-104 11-95 (98)
130 2khc_A Testis-specific RNP-typ 99.7 3.7E-18 1.3E-22 134.3 8.9 82 108-190 37-118 (118)
131 1x4b_A Heterogeneous nuclear r 99.7 4.5E-18 1.5E-22 133.4 9.3 91 15-106 18-108 (116)
132 2lea_A Serine/arginine-rich sp 99.7 3.4E-18 1.2E-22 137.6 8.7 93 14-106 37-129 (135)
133 3r27_A HnRNP L, heterogeneous 99.7 9.5E-18 3.2E-22 126.1 10.6 80 20-105 17-98 (100)
134 1sjq_A Polypyrimidine tract-bi 99.7 7.1E-18 2.4E-22 128.1 9.9 81 109-196 14-96 (105)
135 3ulh_A THO complex subunit 4; 99.7 9.4E-18 3.2E-22 129.5 10.8 84 18-102 23-106 (107)
136 2cpf_A RNA binding motif prote 99.7 5E-18 1.7E-22 128.9 9.0 84 110-194 4-90 (98)
137 2ad9_A Polypyrimidine tract-bi 99.7 1.2E-17 3.9E-22 130.2 11.3 84 18-107 25-110 (119)
138 2cqi_A Nucleolysin TIAR; RNA r 99.7 2E-17 6.9E-22 126.7 12.4 86 107-195 11-96 (103)
139 4a8x_A RNA-binding protein wit 99.7 6E-18 2.1E-22 125.7 9.2 82 23-104 3-85 (88)
140 2kxn_B Transformer-2 protein h 99.7 6.3E-18 2.2E-22 134.9 9.8 86 107-193 42-127 (129)
141 2cq4_A RNA binding motif prote 99.7 4E-18 1.4E-22 133.2 8.5 86 19-105 20-105 (114)
142 2cpi_A CCR4-NOT transcription 99.7 5.7E-18 1.9E-22 131.7 9.3 89 17-105 8-102 (111)
143 2dhg_A TRNA selenocysteine ass 99.7 8.1E-18 2.8E-22 129.2 10.0 85 108-194 6-92 (104)
144 1wex_A Hypothetical protein (r 99.7 2E-17 6.7E-22 126.5 12.0 82 19-106 10-93 (104)
145 2cqd_A RNA-binding region cont 99.7 1E-17 3.5E-22 131.3 10.7 85 107-193 13-97 (116)
146 1u6f_A Tcubp1, RNA-binding pro 99.7 8.9E-18 3E-22 136.1 10.7 87 108-195 39-125 (139)
147 3ucg_A Polyadenylate-binding p 99.7 8.9E-18 3E-22 125.1 9.8 81 23-104 5-85 (89)
148 2hgl_A HNRPF protein, heteroge 99.7 3.4E-18 1.2E-22 137.1 8.0 84 108-193 41-126 (136)
149 1wg5_A Heterogeneous nuclear r 99.7 1.3E-17 4.5E-22 128.0 10.8 87 17-105 8-95 (104)
150 3ex7_B RNA-binding protein 8A; 99.7 1.1E-17 3.8E-22 133.1 10.8 89 107-196 18-106 (126)
151 1x4d_A Matrin 3; structural ge 99.7 8.5E-18 2.9E-22 127.6 9.6 82 18-105 9-93 (102)
152 2dh8_A DAZ-associated protein 99.7 9.7E-18 3.3E-22 129.0 10.0 87 107-195 12-98 (105)
153 3ns6_A Eukaryotic translation 99.7 2E-18 6.9E-23 131.5 6.1 82 111-193 6-94 (100)
154 2db1_A Heterogeneous nuclear r 99.7 3.8E-18 1.3E-22 134.1 7.8 85 18-104 11-98 (118)
155 2dgv_A HnRNP M, heterogeneous 99.7 1.6E-17 5.6E-22 124.5 11.0 84 21-106 5-88 (92)
156 1wi8_A EIF-4B, eukaryotic tran 99.7 1.4E-17 4.7E-22 127.9 10.8 84 109-195 13-97 (104)
157 2kt5_A RNA and export factor-b 99.7 2.5E-17 8.7E-22 130.6 12.7 85 20-105 31-115 (124)
158 2wbr_A GW182, gawky, LD47780P; 99.7 8.5E-18 2.9E-22 121.8 8.9 74 111-191 7-80 (89)
159 2cq3_A RNA-binding protein 9; 99.7 2.9E-17 9.9E-22 125.8 12.5 86 107-195 11-96 (103)
160 2dng_A Eukaryotic translation 99.7 1.2E-17 4.2E-22 127.9 10.4 84 108-194 12-95 (103)
161 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.6E-17 5.5E-22 137.3 11.9 87 20-106 35-121 (156)
162 1why_A Hypothetical protein ri 99.7 2.9E-17 9.9E-22 124.4 12.3 83 17-105 10-94 (97)
163 2ek1_A RNA-binding protein 12; 99.7 2.7E-18 9.2E-23 129.6 6.5 83 20-102 11-93 (95)
164 1x4e_A RNA binding motif, sing 99.7 2.4E-18 8.2E-23 127.0 6.0 81 22-102 3-83 (85)
165 2jrs_A RNA-binding protein 39; 99.7 8.4E-18 2.9E-22 129.9 9.4 85 108-193 23-107 (108)
166 2dgw_A Probable RNA-binding pr 99.7 1.6E-17 5.6E-22 124.2 10.6 84 19-105 5-88 (91)
167 2mss_A Protein (musashi1); RNA 99.7 5.5E-18 1.9E-22 122.0 7.7 75 26-101 1-75 (75)
168 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.3E-17 8E-22 133.7 12.3 86 16-101 55-140 (140)
169 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4.4E-18 1.5E-22 129.7 7.4 85 19-105 14-99 (100)
170 2cqp_A RNA-binding protein 12; 99.7 1.1E-17 3.8E-22 126.9 9.6 83 109-192 13-95 (98)
171 2do0_A HnRNP M, heterogeneous 99.7 2.6E-17 8.9E-22 128.6 11.9 85 107-193 11-95 (114)
172 2dgx_A KIAA0430 protein; RRM d 99.7 2.2E-17 7.7E-22 124.7 10.8 81 109-193 7-91 (96)
173 2rs2_A Musashi-1, RNA-binding 99.7 1.3E-17 4.4E-22 129.1 9.7 84 109-194 23-106 (109)
174 2ywk_A Putative RNA-binding pr 99.7 1.5E-17 5.3E-22 125.4 9.7 82 108-191 13-94 (95)
175 2cpy_A RNA-binding protein 12; 99.7 7.2E-18 2.4E-22 131.7 8.1 85 19-105 10-95 (114)
176 2dis_A Unnamed protein product 99.7 1.9E-17 6.6E-22 128.2 10.4 85 22-106 6-94 (109)
177 2jwn_A Embryonic polyadenylate 99.7 8.1E-18 2.8E-22 133.5 8.3 86 20-106 32-117 (124)
178 2ek1_A RNA-binding protein 12; 99.7 1.2E-17 4E-22 126.1 8.6 80 111-191 15-94 (95)
179 2hgn_A Heterogeneous nuclear r 99.7 2.3E-18 7.7E-23 138.6 4.8 123 67-194 2-125 (139)
180 4a8x_A RNA-binding protein wit 99.7 1.4E-17 4.9E-22 123.6 8.8 81 111-192 4-85 (88)
181 2cqg_A TDP-43, TAR DNA-binding 99.7 5.2E-17 1.8E-21 124.4 12.0 86 106-194 10-95 (103)
182 2fc9_A NCL protein; structure 99.7 3E-17 1E-21 125.3 10.6 86 17-106 8-93 (101)
183 3s7r_A Heterogeneous nuclear r 99.7 2.4E-17 8.2E-22 122.2 9.7 80 108-189 8-87 (87)
184 2kn4_A Immunoglobulin G-bindin 99.7 4.3E-17 1.5E-21 135.0 12.3 87 20-106 66-152 (158)
185 2cq1_A PTB-like protein L; RRM 99.7 4.2E-17 1.4E-21 123.9 11.1 83 106-195 10-94 (101)
186 2mss_A Protein (musashi1); RNA 99.7 9.9E-18 3.4E-22 120.6 7.3 75 113-189 1-75 (75)
187 2nlw_A Eukaryotic translation 99.7 2.2E-17 7.4E-22 127.0 9.7 86 18-105 9-101 (105)
188 1x5o_A RNA binding motif, sing 99.7 4.5E-17 1.5E-21 127.2 11.7 84 19-103 20-111 (114)
189 3ucg_A Polyadenylate-binding p 99.7 1.9E-17 6.4E-22 123.3 9.0 80 111-192 6-85 (89)
190 2cq4_A RNA binding motif prote 99.7 1.4E-17 4.8E-22 130.1 8.5 82 110-193 24-105 (114)
191 1h2v_Z 20 kDa nuclear CAP bind 99.7 3.5E-17 1.2E-21 135.3 11.3 87 107-194 35-121 (156)
192 1uaw_A Mouse-musashi-1; RNP-ty 99.7 6.8E-18 2.3E-22 122.1 6.2 76 25-101 1-76 (77)
193 2j76_E EIF-4B, EIF4B, eukaryot 99.7 9E-18 3.1E-22 127.9 7.1 82 109-193 17-99 (100)
194 1p1t_A Cleavage stimulation fa 99.7 1.1E-17 3.7E-22 128.5 7.6 83 111-194 8-90 (104)
195 3ulh_A THO complex subunit 4; 99.7 3.3E-17 1.1E-21 126.5 10.3 81 108-190 26-106 (107)
196 1fj7_A Nucleolin RBD1, protein 99.7 4.8E-18 1.6E-22 129.8 5.5 86 19-106 12-97 (101)
197 2dgv_A HnRNP M, heterogeneous 99.7 3.4E-17 1.1E-21 122.7 9.8 83 109-194 6-88 (92)
198 1x4c_A Splicing factor, argini 99.7 9.8E-17 3.4E-21 124.0 12.7 80 20-106 11-95 (108)
199 1x4e_A RNA binding motif, sing 99.7 7E-18 2.4E-22 124.5 5.9 80 110-190 4-83 (85)
200 2ki2_A SS-DNA binding protein 99.7 4.2E-18 1.5E-22 127.1 4.7 80 25-105 2-81 (90)
201 1wg5_A Heterogeneous nuclear r 99.7 3.5E-17 1.2E-21 125.6 9.8 83 109-193 13-95 (104)
202 2fc8_A NCL protein; structure 99.7 4.6E-17 1.6E-21 124.5 10.5 84 107-194 11-94 (102)
203 2cpj_A Non-POU domain-containi 99.7 5.5E-17 1.9E-21 123.3 10.8 82 18-105 9-90 (99)
204 2fc9_A NCL protein; structure 99.7 5.5E-17 1.9E-21 123.8 10.8 83 107-194 11-93 (101)
205 2dnq_A RNA-binding protein 4B; 99.7 7.7E-17 2.6E-21 120.2 11.3 79 21-107 5-83 (90)
206 1x4b_A Heterogeneous nuclear r 99.7 3.5E-17 1.2E-21 128.3 9.8 83 110-194 26-108 (116)
207 2dnn_A RNA-binding protein 12; 99.7 2.3E-17 7.7E-22 127.2 8.5 81 20-103 12-92 (109)
208 2dgw_A Probable RNA-binding pr 99.7 5.6E-17 1.9E-21 121.3 10.5 81 109-193 8-88 (91)
209 1wez_A HnRNP H', FTP-3, hetero 99.7 2.2E-17 7.6E-22 126.1 8.4 85 18-105 9-93 (102)
210 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.4E-17 4.7E-22 120.5 6.9 76 112-189 1-76 (77)
211 2ad9_A Polypyrimidine tract-bi 99.7 5.2E-17 1.8E-21 126.5 10.6 82 108-196 28-111 (119)
212 2cpi_A CCR4-NOT transcription 99.7 3.8E-17 1.3E-21 127.0 9.8 85 108-193 12-102 (111)
213 2hgl_A HNRPF protein, heteroge 99.7 1E-17 3.5E-22 134.3 6.8 84 19-104 39-125 (136)
214 1x4d_A Matrin 3; structural ge 99.7 2.9E-17 1E-21 124.7 8.9 79 108-193 12-93 (102)
215 1wel_A RNA-binding protein 12; 99.7 6.6E-18 2.2E-22 134.0 5.5 85 19-104 20-104 (124)
216 2e5j_A Methenyltetrahydrofolat 99.7 7.6E-17 2.6E-21 122.1 11.0 84 17-105 12-95 (97)
217 2dis_A Unnamed protein product 99.7 3.3E-17 1.1E-21 126.9 9.1 84 110-194 7-94 (109)
218 2jwn_A Embryonic polyadenylate 99.7 3.1E-17 1E-21 130.2 9.0 82 110-193 35-116 (124)
219 1s79_A Lupus LA protein; RRM, 99.7 2.1E-17 7.3E-22 126.3 7.8 79 110-191 10-88 (103)
220 2err_A Ataxin-2-binding protei 99.7 5E-17 1.7E-21 125.8 10.0 83 107-192 25-107 (109)
221 2cpy_A RNA-binding protein 12; 99.7 3E-17 1E-21 128.1 8.8 84 108-193 12-95 (114)
222 1x4f_A Matrin 3; structural ge 99.7 1.9E-17 6.6E-22 127.5 7.5 80 20-105 21-103 (112)
223 2kt5_A RNA and export factor-b 99.7 5.8E-17 2E-21 128.6 10.4 85 108-194 32-116 (124)
224 1x4a_A Splicing factor, argini 99.7 1.3E-16 4.4E-21 123.6 12.1 83 108-194 19-101 (109)
225 2a3j_A U1 small nuclear ribonu 99.7 7.5E-17 2.6E-21 127.8 10.9 83 20-105 25-111 (127)
226 2jvr_A Nucleolar protein 3; RN 99.7 4.3E-17 1.5E-21 125.9 9.2 82 20-105 24-106 (111)
227 2fc8_A NCL protein; structure 99.7 6.9E-17 2.4E-21 123.5 10.2 88 16-106 7-94 (102)
228 2cpx_A Hypothetical protein FL 99.7 2.2E-17 7.6E-22 129.2 7.6 86 109-195 23-108 (115)
229 3r27_A HnRNP L, heterogeneous 99.7 6.6E-17 2.3E-21 121.5 9.8 79 108-193 18-98 (100)
230 2ytc_A PRE-mRNA-splicing facto 99.7 7.8E-17 2.7E-21 118.8 10.1 79 18-102 6-85 (85)
231 1wex_A Hypothetical protein (r 99.7 7.1E-17 2.4E-21 123.4 10.1 80 108-194 12-93 (104)
232 2krb_A Eukaryotic translation 99.7 1.9E-17 6.5E-22 121.0 6.6 74 24-99 1-81 (81)
233 1rk8_A CG8781-PA, CG8781-PA pr 99.7 6.8E-17 2.3E-21 134.8 10.8 86 20-105 68-153 (165)
234 1iqt_A AUF1, heterogeneous nuc 99.7 2.1E-17 7.1E-22 118.9 6.5 75 26-101 1-75 (75)
235 3q2s_C Cleavage and polyadenyl 99.7 3E-17 1E-21 144.1 8.8 82 23-104 67-150 (229)
236 2jvo_A Nucleolar protein 3; nu 99.7 7.3E-17 2.5E-21 124.6 10.0 84 14-105 21-104 (108)
237 2ki2_A SS-DNA binding protein 99.7 7.6E-18 2.6E-22 125.7 4.2 81 112-194 2-82 (90)
238 1x4g_A Nucleolysin TIAR; struc 99.7 1.3E-16 4.4E-21 123.5 11.3 82 19-106 20-101 (109)
239 2dgu_A Heterogeneous nuclear r 99.7 1.7E-16 5.7E-21 121.6 11.7 79 20-106 7-85 (103)
240 2dgt_A RNA-binding protein 30; 99.7 1.5E-16 5.2E-21 119.2 11.1 81 18-106 4-84 (92)
241 2lmi_A GRSF-1, G-rich sequence 99.7 1.7E-17 5.7E-22 128.1 6.0 85 18-104 5-92 (107)
242 2cpx_A Hypothetical protein FL 99.7 2.5E-17 8.7E-22 128.8 7.0 89 18-106 19-107 (115)
243 2dnp_A RNA-binding protein 14; 99.7 1.9E-16 6.5E-21 118.1 11.5 80 19-106 4-83 (90)
244 2la4_A Nuclear and cytoplasmic 99.7 6.1E-17 2.1E-21 123.6 8.8 76 22-103 25-100 (101)
245 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.1E-16 3.6E-21 129.8 10.8 81 108-189 60-140 (140)
246 2db1_A Heterogeneous nuclear r 99.7 5.3E-17 1.8E-21 127.5 8.5 83 109-193 15-99 (118)
247 1wez_A HnRNP H', FTP-3, hetero 99.7 3.5E-17 1.2E-21 124.9 7.3 81 109-193 13-93 (102)
248 1fj7_A Nucleolin RBD1, protein 99.7 1.5E-17 5.1E-22 127.0 5.0 82 109-193 15-96 (101)
249 3q2s_C Cleavage and polyadenyl 99.7 2.5E-17 8.7E-22 144.5 7.1 83 110-193 67-151 (229)
250 1wel_A RNA-binding protein 12; 99.7 3.2E-17 1.1E-21 130.0 6.9 83 109-193 23-105 (124)
251 2cpd_A Apobec-1 stimulating pr 99.7 4.5E-16 1.5E-20 118.2 12.9 82 17-106 8-91 (99)
252 2cqh_A IGF-II mRNA-binding pro 99.7 1.1E-16 3.9E-21 120.1 9.4 78 110-194 7-85 (93)
253 1whx_A Hypothetical protein ri 99.7 7.7E-17 2.6E-21 125.1 8.7 78 21-104 7-84 (111)
254 2nlw_A Eukaryotic translation 99.7 8.9E-17 3E-21 123.5 8.8 83 108-193 12-101 (105)
255 2xnq_A Nuclear polyadenylated 99.7 2.4E-16 8.2E-21 119.2 11.1 80 17-104 15-95 (97)
256 1iqt_A AUF1, heterogeneous nuc 99.7 4.5E-17 1.5E-21 117.1 6.4 75 113-189 1-75 (75)
257 2dha_A FLJ20171 protein; RRM d 99.7 4.3E-17 1.5E-21 128.3 6.7 80 21-102 20-103 (123)
258 2hgm_A HNRPF protein, heteroge 99.7 4.3E-17 1.5E-21 128.6 6.7 85 17-104 35-121 (126)
259 1wf1_A RNA-binding protein RAL 99.7 1.6E-16 5.5E-21 123.2 9.9 93 92-193 6-101 (110)
260 1x4c_A Splicing factor, argini 99.7 2.7E-16 9.1E-21 121.5 11.0 78 109-194 13-95 (108)
261 1x5o_A RNA binding motif, sing 99.7 1.6E-16 5.6E-21 124.0 9.8 82 109-192 23-112 (114)
262 1nu4_A U1A RNA binding domain; 99.7 9.6E-17 3.3E-21 121.5 8.2 83 20-105 4-90 (97)
263 1x5p_A Negative elongation fac 99.7 5.6E-16 1.9E-20 117.2 12.3 81 18-106 9-89 (97)
264 1wf1_A RNA-binding protein RAL 99.7 2.8E-16 9.7E-21 121.8 10.9 79 20-106 23-102 (110)
265 2lmi_A GRSF-1, G-rich sequence 99.7 6.5E-17 2.2E-21 124.7 7.0 84 108-193 8-93 (107)
266 2a3j_A U1 small nuclear ribonu 99.7 1.8E-16 6.1E-21 125.6 9.5 82 109-194 27-112 (127)
267 1x4g_A Nucleolysin TIAR; struc 99.7 3.9E-16 1.3E-20 120.8 11.2 79 109-194 23-101 (109)
268 2cpj_A Non-POU domain-containi 99.7 2.7E-16 9.3E-21 119.5 10.0 82 106-194 10-91 (99)
269 2la4_A Nuclear and cytoplasmic 99.7 2E-16 6.9E-21 120.7 9.3 75 110-191 26-100 (101)
270 2lcw_A RNA-binding protein FUS 99.5 4.4E-18 1.5E-22 133.4 0.0 87 20-106 3-97 (116)
271 2jvr_A Nucleolar protein 3; RN 99.7 1.5E-16 5.3E-21 122.8 8.7 78 110-192 27-105 (111)
272 2dha_A FLJ20171 protein; RRM d 99.7 8E-17 2.7E-21 126.8 7.1 81 110-192 22-105 (123)
273 2dnq_A RNA-binding protein 4B; 99.7 3.7E-16 1.3E-20 116.5 10.4 77 109-194 6-82 (90)
274 2hvz_A Splicing factor, argini 99.7 1.4E-16 4.8E-21 121.5 8.2 77 112-194 1-77 (101)
275 2hgn_A Heterogeneous nuclear r 99.7 3.4E-17 1.2E-21 131.7 4.9 85 18-105 40-124 (139)
276 2dgu_A Heterogeneous nuclear r 99.7 4.9E-16 1.7E-20 118.9 11.2 79 108-195 8-86 (103)
277 1why_A Hypothetical protein ri 99.7 3.2E-16 1.1E-20 118.6 10.0 77 110-193 16-94 (97)
278 1fjc_A Nucleolin RBD2, protein 99.7 1E-16 3.5E-21 121.1 7.2 83 18-105 10-92 (96)
279 2i2y_A Fusion protein consists 99.7 4.3E-16 1.5E-20 127.8 11.5 84 17-105 66-149 (150)
280 2f3j_A RNA and export factor b 99.7 3E-16 1E-20 132.1 10.8 84 21-105 85-168 (177)
281 1x4f_A Matrin 3; structural ge 99.7 1.5E-16 5.2E-21 122.5 8.1 80 108-194 22-104 (112)
282 2e5j_A Methenyltetrahydrofolat 99.7 3.7E-16 1.3E-20 118.3 10.1 79 109-193 17-95 (97)
283 2e44_A Insulin-like growth fac 99.7 4.1E-16 1.4E-20 117.7 10.2 81 20-104 11-92 (96)
284 1sjr_A Polypyrimidine tract-bi 99.7 5.5E-16 1.9E-20 126.8 11.5 81 21-105 43-125 (164)
285 2kvi_A Nuclear polyadenylated 99.7 2E-16 6.9E-21 119.4 8.3 78 20-105 6-84 (96)
286 2xs2_A Deleted in azoospermia- 99.7 6.5E-17 2.2E-21 123.7 5.4 82 21-105 6-87 (102)
287 1sjr_A Polypyrimidine tract-bi 99.7 3.5E-16 1.2E-20 128.0 9.9 80 112-196 47-128 (164)
288 2ytc_A PRE-mRNA-splicing facto 99.7 4.9E-16 1.7E-20 114.5 9.7 76 108-190 9-85 (85)
289 2krb_A Eukaryotic translation 99.7 1E-16 3.6E-21 117.0 5.9 73 112-187 2-81 (81)
290 2jvo_A Nucleolar protein 3; nu 99.7 4.7E-16 1.6E-20 120.0 9.7 77 108-193 28-104 (108)
291 2e5g_A U6 snRNA-specific termi 99.7 5.1E-16 1.7E-20 116.8 9.7 79 21-105 5-83 (94)
292 2dnp_A RNA-binding protein 14; 99.7 8.8E-16 3E-20 114.4 10.9 78 108-194 6-83 (90)
293 2dgt_A RNA-binding protein 30; 99.7 9.7E-16 3.3E-20 114.7 11.2 78 108-194 7-84 (92)
294 2cqh_A IGF-II mRNA-binding pro 99.6 3.2E-16 1.1E-20 117.6 8.4 79 21-106 5-85 (93)
295 3zzy_A Polypyrimidine tract-bi 99.6 6.8E-16 2.3E-20 121.7 10.6 85 112-202 29-116 (130)
296 1whx_A Hypothetical protein ri 99.6 3.5E-16 1.2E-20 121.4 8.9 77 111-194 10-86 (111)
297 2j8a_A Histone-lysine N-methyl 99.6 2E-16 6.9E-21 122.3 7.3 81 25-105 3-97 (136)
298 2dnn_A RNA-binding protein 12; 99.6 3.6E-16 1.2E-20 120.4 8.8 78 111-192 16-93 (109)
299 2lcw_A RNA-binding protein FUS 99.5 1E-17 3.5E-22 131.3 0.0 85 109-194 5-97 (116)
300 2cpd_A Apobec-1 stimulating pr 99.6 1.4E-15 4.6E-20 115.6 11.7 79 107-194 11-91 (99)
301 2xnq_A Nuclear polyadenylated 99.6 8.6E-16 2.9E-20 116.1 10.3 75 109-192 20-95 (97)
302 3zzy_A Polypyrimidine tract-bi 99.6 9.2E-16 3.1E-20 120.9 10.8 83 19-106 23-108 (130)
303 1fjc_A Nucleolin RBD2, protein 99.6 2.5E-16 8.5E-21 119.0 7.3 80 108-193 13-92 (96)
304 3lqv_A PRE-mRNA branch site pr 99.6 4.4E-16 1.5E-20 121.7 8.8 82 110-195 7-88 (115)
305 1nu4_A U1A RNA binding domain; 99.6 3.1E-16 1.1E-20 118.7 7.6 81 109-193 6-90 (97)
306 2e5i_A Heterogeneous nuclear r 99.6 2.4E-15 8.1E-20 118.1 12.8 93 7-105 3-103 (124)
307 2cq2_A Hypothetical protein LO 99.6 5.7E-16 1.9E-20 119.3 8.9 79 20-104 21-106 (114)
308 1wg1_A KIAA1579 protein, homol 99.6 4.4E-16 1.5E-20 115.6 8.1 77 22-105 3-79 (88)
309 2xs2_A Deleted in azoospermia- 99.6 2.8E-16 9.7E-21 120.1 7.0 80 111-194 9-88 (102)
310 3beg_B Splicing factor, argini 99.6 6.9E-16 2.4E-20 120.5 9.2 76 22-104 14-94 (115)
311 3md3_A Nuclear and cytoplasmic 99.6 1.4E-15 4.9E-20 126.4 11.6 84 19-102 82-165 (166)
312 2kvi_A Nuclear polyadenylated 99.6 6.4E-16 2.2E-20 116.7 8.5 78 109-195 8-86 (96)
313 2hgm_A HNRPF protein, heteroge 99.6 2.8E-16 9.6E-21 123.9 6.7 82 109-193 40-122 (126)
314 2f3j_A RNA and export factor b 99.6 5.7E-16 1.9E-20 130.4 9.0 83 109-193 86-168 (177)
315 1x5p_A Negative elongation fac 99.6 1.9E-15 6.6E-20 114.3 11.1 79 107-194 11-89 (97)
316 3egn_A RNA-binding protein 40; 99.6 2.6E-16 8.9E-21 128.0 6.6 85 109-194 43-132 (143)
317 2diu_A KIAA0430 protein; struc 99.6 2.1E-15 7.3E-20 110.2 10.5 76 23-108 7-88 (96)
318 2j8a_A Histone-lysine N-methyl 99.6 4.2E-16 1.4E-20 120.5 7.0 81 112-193 3-97 (136)
319 2dnl_A Cytoplasmic polyadenyla 99.6 5E-16 1.7E-20 121.2 7.6 79 21-102 5-86 (114)
320 2cq2_A Hypothetical protein LO 99.6 1.3E-15 4.6E-20 117.2 9.6 78 109-193 23-107 (114)
321 4f02_A Polyadenylate-binding p 99.6 1.4E-15 4.8E-20 132.3 10.5 83 110-193 14-96 (213)
322 3egn_A RNA-binding protein 40; 99.6 2.6E-16 9E-21 128.0 5.3 86 20-105 41-131 (143)
323 2e5g_A U6 snRNA-specific termi 99.6 2.1E-15 7.2E-20 113.4 9.7 78 110-194 7-84 (94)
324 2qfj_A FBP-interacting repress 99.6 2.2E-15 7.5E-20 131.1 11.0 85 21-105 122-206 (216)
325 2g4b_A Splicing factor U2AF 65 99.6 2.4E-15 8.1E-20 126.0 10.7 82 21-102 91-172 (172)
326 2e44_A Insulin-like growth fac 99.6 1.8E-15 6E-20 114.2 8.8 79 110-193 14-93 (96)
327 3pgw_S U1-70K; protein-RNA com 99.6 2.2E-15 7.4E-20 144.4 11.6 85 21-105 99-183 (437)
328 1wg1_A KIAA1579 protein, homol 99.6 1.7E-15 5.9E-20 112.3 8.5 76 110-193 4-79 (88)
329 3d2w_A TAR DNA-binding protein 99.6 2.9E-15 9.8E-20 111.3 9.4 80 19-105 6-85 (89)
330 1fxl_A Paraneoplastic encephal 99.6 3.3E-15 1.1E-19 124.3 10.8 82 111-193 2-83 (167)
331 2diu_A KIAA0430 protein; struc 99.6 5E-15 1.7E-19 108.3 10.0 72 113-195 11-87 (96)
332 2e5i_A Heterogeneous nuclear r 99.6 4.4E-15 1.5E-19 116.5 10.2 79 113-198 27-108 (124)
333 2hzc_A Splicing factor U2AF 65 99.6 2.4E-15 8.1E-20 111.3 8.1 72 22-100 4-86 (87)
334 2yh0_A Splicing factor U2AF 65 99.6 4.7E-15 1.6E-19 127.2 11.0 85 21-105 111-195 (198)
335 2bz2_A Negative elongation fac 99.6 4.3E-15 1.5E-19 116.9 9.4 79 19-105 34-112 (121)
336 2pe8_A Splicing factor 45; RRM 99.6 1E-14 3.5E-19 111.5 11.2 84 21-104 5-94 (105)
337 2bz2_A Negative elongation fac 99.6 4.9E-15 1.7E-19 116.6 9.6 78 108-194 36-113 (121)
338 2voo_A Lupus LA protein; RNA-b 99.6 6.5E-15 2.2E-19 125.7 11.1 115 75-192 63-187 (193)
339 1b7f_A Protein (SXL-lethal pro 99.6 8.6E-15 2.9E-19 122.0 11.5 82 20-101 85-168 (168)
340 3beg_B Splicing factor, argini 99.6 3.7E-15 1.3E-19 116.4 8.5 74 110-191 15-88 (115)
341 2dnl_A Cytoplasmic polyadenyla 99.6 3.4E-15 1.2E-19 116.4 8.1 78 109-190 6-86 (114)
342 2cjk_A Nuclear polyadenylated 99.6 2.9E-15 1E-19 124.8 8.1 83 21-104 84-166 (167)
343 1wf0_A TDP-43, TAR DNA-binding 99.6 1.7E-15 5.7E-20 112.4 5.9 78 22-106 3-80 (88)
344 2pe8_A Splicing factor 45; RRM 99.6 9.8E-15 3.4E-19 111.6 9.9 83 110-193 7-95 (105)
345 3d2w_A TAR DNA-binding protein 99.6 8E-15 2.7E-19 108.9 9.0 76 109-194 9-86 (89)
346 1l3k_A Heterogeneous nuclear r 99.6 8.3E-15 2.9E-19 125.4 10.5 85 21-106 101-185 (196)
347 3pgw_A U1-A; protein-RNA compl 99.6 6.1E-14 2.1E-18 127.2 15.6 82 108-193 6-91 (282)
348 3tyt_A Heterogeneous nuclear r 99.6 1.3E-14 4.3E-19 125.3 10.0 78 110-193 3-81 (205)
349 3nmr_A Cugbp ELAV-like family 99.6 1.5E-14 5.3E-19 121.3 10.2 81 21-102 92-175 (175)
350 1wf0_A TDP-43, TAR DNA-binding 99.5 8.5E-15 2.9E-19 108.6 6.5 77 110-194 4-80 (88)
351 3u1l_A PRE-mRNA-splicing facto 99.5 2.1E-14 7.1E-19 125.4 9.8 80 20-105 130-230 (240)
352 2hzc_A Splicing factor U2AF 65 99.5 2.2E-14 7.7E-19 105.9 8.0 71 110-188 5-86 (87)
353 2voo_A Lupus LA protein; RNA-b 99.5 3E-14 1E-18 121.6 9.7 80 23-104 108-187 (193)
354 2dit_A HIV TAT specific factor 99.5 7.6E-14 2.6E-18 108.3 10.7 87 15-105 6-103 (112)
355 3u1l_A PRE-mRNA-splicing facto 99.5 2.7E-14 9.3E-19 124.7 8.4 100 87-193 107-230 (240)
356 1fje_B Nucleolin RBD12, protei 99.5 4.4E-14 1.5E-18 118.6 9.0 80 20-104 95-174 (175)
357 2adc_A Polypyrimidine tract-bi 99.5 2.1E-13 7.1E-18 119.9 10.9 81 107-193 30-111 (229)
358 2dit_A HIV TAT specific factor 99.5 3.8E-13 1.3E-17 104.3 10.9 80 109-193 13-103 (112)
359 3v4m_A Splicing factor U2AF 65 99.5 2.9E-13 9.8E-18 103.5 9.4 84 22-105 3-98 (105)
360 3v4m_A Splicing factor U2AF 65 99.4 3.2E-13 1.1E-17 103.2 9.0 82 111-193 5-98 (105)
361 3ue2_A Poly(U)-binding-splicin 99.4 3E-13 1E-17 105.4 8.3 82 23-104 19-109 (118)
362 1qm9_A Polypyrimidine tract-bi 99.4 2.9E-13 9.8E-18 116.1 8.8 77 111-193 3-80 (198)
363 1jmt_A Splicing factor U2AF 35 99.4 8.5E-14 2.9E-18 106.3 4.7 72 116-189 20-103 (104)
364 1jmt_A Splicing factor U2AF 35 99.4 9.9E-14 3.4E-18 105.9 5.1 72 29-101 20-103 (104)
365 3ue2_A Poly(U)-binding-splicin 99.4 3.4E-13 1.1E-17 105.1 7.8 82 110-192 19-109 (118)
366 3tht_A Alkylated DNA repair pr 99.4 7.6E-13 2.6E-17 121.7 10.7 109 18-135 12-132 (345)
367 3sde_A Paraspeckle component 1 99.4 5.3E-13 1.8E-17 119.6 9.0 83 23-106 95-181 (261)
368 2d9o_A DNAJ (HSP40) homolog, s 99.3 1E-11 3.5E-16 93.6 11.5 75 24-105 10-91 (100)
369 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.2E-11 4E-16 93.3 11.0 82 93-193 10-91 (100)
370 3s6e_A RNA-binding protein 39; 99.3 1.6E-11 5.4E-16 94.9 9.5 78 22-103 5-92 (114)
371 3tht_A Alkylated DNA repair pr 99.3 7.1E-12 2.4E-16 115.2 8.6 76 108-190 15-97 (345)
372 3s6e_A RNA-binding protein 39; 99.3 1.5E-11 5E-16 95.1 9.0 64 125-193 31-94 (114)
373 1owx_A Lupus LA protein, SS-B, 99.1 1.9E-10 6.4E-15 89.0 8.0 82 18-105 12-97 (121)
374 2dnr_A Synaptojanin-1; RRM dom 99.1 2.8E-10 9.7E-15 82.4 7.6 73 23-104 6-86 (91)
375 1owx_A Lupus LA protein, SS-B, 99.1 1E-10 3.5E-15 90.5 4.9 82 106-194 13-98 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.0 7.8E-10 2.7E-14 80.1 7.0 57 126-192 30-86 (91)
377 3dxb_A Thioredoxin N-terminall 99.0 1.3E-08 4.3E-13 88.7 15.9 70 123-193 141-214 (222)
378 1ufw_A Synaptojanin 2; RNP dom 98.9 8.8E-10 3E-14 80.1 5.5 71 23-102 14-93 (95)
379 1ufw_A Synaptojanin 2; RNP dom 98.9 2.9E-09 9.8E-14 77.5 5.7 70 111-190 15-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.9 6.3E-09 2.2E-13 90.6 9.0 70 36-105 141-214 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.7 1.6E-07 5.5E-12 69.6 9.5 75 21-101 18-97 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.4 2E-06 6.9E-11 63.7 9.6 74 109-189 19-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.0 5.6E-05 1.9E-09 55.6 10.6 89 22-124 6-99 (104)
384 1wey_A Calcipressin 1; structu 97.9 2.3E-05 7.9E-10 57.9 6.3 74 23-102 4-82 (104)
385 1whv_A Poly(A)-specific ribonu 97.8 8.8E-05 3E-09 53.8 8.0 65 14-87 6-70 (100)
386 1wey_A Calcipressin 1; structu 97.8 5.8E-05 2E-09 55.8 6.8 74 111-191 5-83 (104)
387 1wwh_A Nucleoporin 35, nucleop 97.6 0.00036 1.2E-08 53.0 8.4 76 19-102 19-95 (119)
388 1uw4_A UPF3X; nonsense mediate 97.4 0.00046 1.6E-08 50.1 7.3 69 25-93 2-72 (91)
389 1whv_A Poly(A)-specific ribonu 97.4 0.00073 2.5E-08 49.1 7.8 54 112-175 17-70 (100)
390 1uw4_A UPF3X; nonsense mediate 97.3 0.00069 2.4E-08 49.2 7.1 69 112-181 2-72 (91)
391 2dhx_A Poly (ADP-ribose) polym 97.1 0.0032 1.1E-07 46.3 8.8 74 110-192 7-84 (104)
392 3ctr_A Poly(A)-specific ribonu 97.1 0.00047 1.6E-08 50.2 4.1 54 25-87 7-60 (101)
393 3p3d_A Nucleoporin 53; structu 97.0 0.00054 1.8E-08 52.8 4.1 79 22-102 5-97 (132)
394 1wwh_A Nucleoporin 35, nucleop 96.9 0.0037 1.3E-07 47.5 8.0 73 111-192 24-97 (119)
395 3ctr_A Poly(A)-specific ribonu 96.9 0.00037 1.3E-08 50.7 2.0 53 113-175 8-60 (101)
396 3p3d_A Nucleoporin 53; structu 96.9 0.0027 9.2E-08 48.9 6.8 79 112-192 8-99 (132)
397 2l08_A Regulator of nonsense t 96.5 0.0036 1.2E-07 45.7 4.8 72 22-93 7-80 (97)
398 2l08_A Regulator of nonsense t 96.5 0.0045 1.5E-07 45.2 5.2 70 111-181 9-80 (97)
399 3pq1_A Poly(A) RNA polymerase; 96.4 0.0018 6E-08 61.6 3.3 56 23-84 52-107 (464)
400 3pq1_A Poly(A) RNA polymerase; 94.1 0.029 9.9E-07 53.3 3.4 55 111-172 53-107 (464)
401 3d45_A Poly(A)-specific ribonu 91.6 0.47 1.6E-05 45.8 8.1 58 22-88 438-495 (507)
402 4eyt_A Telomerase associated p 88.1 4.8 0.00017 28.3 8.7 60 21-88 9-68 (129)
403 2g0c_A ATP-dependent RNA helic 87.2 1.4 4.7E-05 30.3 5.7 60 122-190 12-75 (76)
404 3d45_A Poly(A)-specific ribonu 85.4 1.9 6.5E-05 41.5 7.5 55 112-176 441-495 (507)
405 4eyt_A Telomerase associated p 74.3 19 0.00063 25.3 7.4 58 109-175 10-67 (129)
406 2g0c_A ATP-dependent RNA helic 71.3 14 0.00048 24.9 6.5 68 26-102 2-75 (76)
407 3lpe_A Putative transcription 66.0 32 0.0011 24.3 7.8 32 51-87 40-71 (92)
408 2kpo_A Rossmann 2X2 fold prote 62.5 11 0.00037 25.8 4.1 52 123-187 33-84 (110)
409 3fry_A Probable copper-exporti 61.9 20 0.00067 23.6 5.7 54 24-84 6-59 (73)
410 2op5_A Hypothetical protein; f 57.0 45 0.0015 23.0 6.8 48 126-175 37-84 (117)
411 3ced_A Methionine import ATP-b 56.5 28 0.00097 24.9 5.9 55 123-177 32-88 (98)
412 2inr_A DNA topoisomerase 4 sub 52.0 34 0.0011 32.7 7.1 98 24-135 275-376 (514)
413 2kpo_A Rossmann 2X2 fold prote 50.6 16 0.00054 24.9 3.4 50 36-98 33-83 (110)
414 3lfj_A Manxb, phosphotransfera 48.4 43 0.0015 27.3 6.4 63 66-139 97-162 (187)
415 4e8u_A Putative uncharacterize 47.4 30 0.001 27.7 5.1 56 26-84 14-81 (172)
416 3ilw_A DNA gyrase subunit A; D 46.5 28 0.00096 32.8 5.6 63 23-86 235-301 (470)
417 3j21_T 50S ribosomal protein L 46.3 34 0.0011 24.0 4.7 57 114-173 25-82 (86)
418 1ywx_A 30S ribosomal protein S 43.8 19 0.00066 26.2 3.2 47 121-169 28-79 (102)
419 4a4j_A Pacszia, cation-transpo 41.6 23 0.00079 22.6 3.3 54 25-84 4-60 (69)
420 3dxs_X Copper-transporting ATP 41.1 70 0.0024 20.6 6.3 55 25-85 4-62 (74)
421 3h7h_B Transcription elongatio 40.9 57 0.0019 23.8 5.4 36 50-90 40-75 (106)
422 3lpx_A GYRA, DNA gyrase, A sub 40.2 49 0.0017 31.3 6.1 63 23-86 225-290 (500)
423 1vd2_A Protein kinase C, IOTA 40.2 86 0.0029 22.1 6.1 54 27-87 17-75 (89)
424 2lfv_A Protein DAMX; cell divi 43.4 7.1 0.00024 28.8 0.0 61 23-88 24-86 (106)
425 2v94_A RPS24, 30S ribosomal pr 35.9 74 0.0025 23.3 5.3 48 34-82 37-89 (107)
426 3ced_A Methionine import ATP-b 35.3 44 0.0015 23.9 4.1 63 26-88 22-87 (98)
427 2xcs_B DNA gyrase subunit B, D 34.2 55 0.0019 32.5 5.7 65 23-87 456-523 (692)
428 3ts2_A Protein LIN-28 homolog 34.0 6.3 0.00021 31.0 -0.8 28 39-74 2-29 (148)
429 1yg0_A COP associated protein; 33.1 83 0.0029 19.1 5.9 54 26-85 4-60 (66)
430 2lsl_A Telomerase associated p 39.2 9.1 0.00031 27.1 0.0 68 19-86 13-97 (137)
431 2xzm_P RPS24E; ribosome, trans 32.7 58 0.002 25.3 4.5 46 122-169 32-82 (149)
432 4es6_A Uroporphyrinogen-III sy 32.5 2.2E+02 0.0074 23.8 8.9 148 24-176 6-206 (254)
433 2f9f_A First mannosyl transfer 31.8 1.8E+02 0.0061 22.5 12.3 44 8-51 8-51 (177)
434 2crl_A Copper chaperone for su 31.6 89 0.0031 21.9 5.3 53 25-84 21-74 (98)
435 3lpe_A Putative transcription 31.5 80 0.0027 22.2 4.9 25 153-177 49-73 (92)
436 2xmw_A PACS-N, cation-transpor 31.1 95 0.0033 19.2 6.6 54 25-84 5-61 (71)
437 3dhx_A Methionine import ATP-b 31.1 30 0.001 25.2 2.6 55 123-177 33-88 (106)
438 2kt2_A Mercuric reductase; nme 30.9 86 0.0029 19.4 4.8 53 26-84 3-58 (69)
439 2exu_A Transcription initiatio 30.8 1.1E+02 0.0039 25.1 6.3 29 152-180 147-175 (200)
440 2ofg_X Zinc-transporting ATPas 30.8 1.4E+02 0.0047 21.3 6.4 54 25-84 10-67 (111)
441 4hyl_A Stage II sporulation pr 30.7 1.2E+02 0.0042 21.7 6.1 98 26-172 16-113 (117)
442 4a17_R RPL23A, 60S ribosomal p 30.4 55 0.0019 25.5 4.0 57 114-173 89-146 (150)
443 2fp3_A Caspase NC; apoptosis, 29.8 1.6E+02 0.0056 26.0 7.7 92 23-134 61-166 (316)
444 2ko1_A CTR148A, GTP pyrophosph 29.7 1.3E+02 0.0043 20.2 5.9 56 120-177 14-69 (88)
445 3u5e_X 60S ribosomal protein L 29.0 62 0.0021 25.0 4.1 57 114-173 81-138 (142)
446 1aw0_A Menkes copper-transport 28.6 1.1E+02 0.0037 19.0 5.1 56 25-86 5-64 (72)
447 2exu_A Transcription initiatio 28.1 91 0.0031 25.6 5.2 34 51-89 139-172 (200)
448 1q8l_A Copper-transporting ATP 28.0 1.3E+02 0.0045 19.8 8.1 56 24-85 10-69 (84)
449 1x8d_A Hypothetical protein YI 27.8 1.4E+02 0.0046 21.6 5.6 34 39-75 27-60 (104)
450 2x4i_A CAG38848, uncharacteriz 27.6 1E+02 0.0034 22.8 4.8 60 70-138 41-106 (114)
451 1cpz_A Protein (COPZ); copper 27.4 1.1E+02 0.0037 18.6 7.3 53 26-84 3-59 (68)
452 1fme_A FSD-EY peptide; beta-BE 27.3 38 0.0013 17.3 1.7 13 36-48 13-25 (28)
453 2gu3_A YPMB protein; APC1927, 26.9 58 0.002 24.9 3.7 48 29-76 68-128 (136)
454 2g9o_A Copper-transporting ATP 26.8 76 0.0026 21.6 4.1 54 25-84 5-62 (90)
455 1osd_A MERP, hypothetical prot 26.8 1.2E+02 0.004 18.8 6.9 55 25-85 5-63 (72)
456 2l3m_A Copper-ION-binding prot 26.8 1.2E+02 0.004 18.8 6.0 54 25-84 7-64 (71)
457 2bu3_A ALR0975 protein; phytoc 26.6 2.5E+02 0.0087 23.9 7.9 101 34-162 132-251 (254)
458 1yjr_A Copper-transporting ATP 26.1 1.2E+02 0.0043 18.9 7.0 46 24-75 5-50 (75)
459 3zzp_A TS9, ribosomal protein 25.7 94 0.0032 21.1 4.2 66 68-139 7-72 (77)
460 2f06_A Conserved hypothetical 25.4 2.1E+02 0.0073 21.4 13.2 110 38-173 20-130 (144)
461 1y3j_A Copper-transporting ATP 25.3 1.4E+02 0.0046 19.0 5.5 56 25-86 5-64 (77)
462 2qrr_A Methionine import ATP-b 25.3 71 0.0024 22.8 3.7 57 121-177 33-90 (101)
463 1lfp_A Hypothetical protein AQ 25.2 2.5E+02 0.0084 23.9 7.6 118 26-176 96-224 (249)
464 1uta_A FTSN, MSGA, cell divisi 25.0 1.2E+02 0.0041 20.4 4.8 55 72-136 16-70 (81)
465 2rop_A Copper-transporting ATP 24.6 2.7E+02 0.0091 22.2 11.5 136 23-174 20-183 (202)
466 1kvi_A Copper-transporting ATP 24.2 1.4E+02 0.0049 19.0 7.0 57 24-86 9-69 (79)
467 3gbv_A Putative LACI-family tr 23.9 3.2E+02 0.011 22.9 9.2 62 24-89 70-131 (304)
468 2e5p_A Protein PHF1, PHD finge 23.2 40 0.0014 22.2 1.7 12 65-76 36-47 (68)
469 3iz6_U 40S ribosomal protein S 23.2 52 0.0018 25.3 2.7 46 122-168 39-89 (138)
470 3p45_A Caspase-6; protease, hu 23.0 2.6E+02 0.0088 22.4 7.0 86 24-133 45-144 (179)
471 2jjm_A Glycosyl transferase, g 22.5 3E+02 0.01 24.3 8.5 27 22-48 210-236 (394)
472 3iz5_X 60S ribosomal protein L 22.3 55 0.0019 25.6 2.7 56 114-172 91-147 (152)
473 3fut_A Dimethyladenosine trans 22.1 3.3E+02 0.011 23.2 8.1 80 42-145 62-143 (271)
474 3fjv_A Uncharacterized novel p 21.7 41 0.0014 27.5 2.0 48 36-90 65-112 (194)
475 4a18_J EIF6, translation initi 21.6 3.1E+02 0.011 23.3 7.5 129 32-174 75-224 (248)
476 2qrr_A Methionine import ATP-b 21.6 1.4E+02 0.0047 21.2 4.7 63 26-88 25-89 (101)
477 2qsw_A Methionine import ATP-b 21.5 60 0.002 23.1 2.7 66 114-179 26-92 (100)
478 3od5_A Caspase-6; caspase doma 21.4 3.9E+02 0.013 23.0 8.4 88 23-134 21-122 (278)
479 2kjw_A TS9, 30S ribosomal prot 21.4 46 0.0016 23.8 2.0 60 68-136 7-69 (96)
480 3cjk_B Copper-transporting ATP 21.3 1.6E+02 0.0055 18.4 6.7 54 26-85 5-62 (75)
481 3mfb_A Uncharacterized protein 21.2 1.2E+02 0.0042 23.8 4.5 35 36-70 3-40 (157)
482 3lo3_A Uncharacterized conserv 21.1 1.4E+02 0.0047 21.0 4.5 45 128-173 26-72 (94)
483 1fvq_A Copper-transporting ATP 21.0 1.6E+02 0.0053 18.2 6.0 54 26-85 5-61 (72)
484 3h7h_B Transcription elongatio 20.9 47 0.0016 24.3 1.9 27 152-178 49-75 (106)
485 1nw9_B Caspase 9, apoptosis-re 20.6 3.1E+02 0.011 23.5 7.6 93 23-133 21-129 (277)
486 3p3v_A PTS system, N-acetylgal 20.6 3E+02 0.01 21.6 6.9 35 65-103 77-111 (163)
487 2ql9_A Caspase-7; cysteine pro 20.5 2.7E+02 0.0094 22.1 6.7 85 25-133 46-144 (173)
488 1f1j_A Caspase-7 protease; cas 20.4 2.1E+02 0.0071 25.2 6.5 87 24-133 70-169 (305)
489 3dhx_A Methionine import ATP-b 20.3 69 0.0024 23.2 2.8 65 25-89 22-88 (106)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4e-36 Score=262.91 Aligned_cols=169 Identities=39% Similarity=0.669 Sum_probs=153.6
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
...++|||+||+.++||++|+++|++||.|.+|+|++|..++.++|||||+|.+.++|++|++.+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcCcc-ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceec
Q 017119 102 SQDKK-SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180 (377)
Q Consensus 102 ~~~~~-~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~ 180 (377)
..... ......+|||+||++++++++|+++|+.||.| ..++|++|. +.++|||||+|.+.++|++|++.||+..|+
T Consensus 93 ~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i-~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~ 169 (213)
T 4f02_A 93 QRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNI-LSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLN 169 (213)
T ss_dssp CCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred cccccccccccccceECCcccccHHHHHHHHHhhcCCe-EEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 76543 22345689999999999999999999999998 577888874 457999999999999999999999999999
Q ss_pred CeeeEEeeeeecC
Q 017119 181 NRQITVSYAYKKD 193 (377)
Q Consensus 181 g~~l~v~~a~~~~ 193 (377)
|+.|+|+|+..+.
T Consensus 170 g~~i~V~~a~~~~ 182 (213)
T 4f02_A 170 DRKVFVGRFKSRK 182 (213)
T ss_dssp TEECEEEECCCHH
T ss_pred CEEEEEEEcCCCc
Confidence 9999999997653
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=242.74 Aligned_cols=165 Identities=35% Similarity=0.615 Sum_probs=152.9
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcC
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD 104 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 104 (377)
++|||+||+.++|+++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|++|++.+++..+.|+.|+|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999887 4779999999999999999999999999999999999998766
Q ss_pred cc-ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCee
Q 017119 105 KK-SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ 183 (377)
Q Consensus 105 ~~-~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~ 183 (377)
.. .....++|||+||++++++++|+++|+.||.| ..+++.++..++.++|||||+|.+.++|.+|++.|++..++|+.
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSY-LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTE-EEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCe-eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 53 33456789999999999999999999999998 57899999999999999999999999999999999999999999
Q ss_pred eEEeeeee
Q 017119 184 ITVSYAYK 191 (377)
Q Consensus 184 l~v~~a~~ 191 (377)
|+|+|+++
T Consensus 159 i~v~~a~~ 166 (166)
T 3md3_A 159 LRINWAAK 166 (166)
T ss_dssp CEEEESCC
T ss_pred EEEEecCC
Confidence 99999863
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.5e-34 Score=243.10 Aligned_cols=165 Identities=32% Similarity=0.492 Sum_probs=154.9
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
.+++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999998889999999999999999999999999999999999999987
Q ss_pred cCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC-
Q 017119 103 QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN- 181 (377)
Q Consensus 103 ~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g- 181 (377)
.... ....++|||+||+.++++++|+++|++||.| ..+++.++..++.++|||||+|.+.++|.+|++.|++..++|
T Consensus 82 ~~~~-~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 82 PGGE-SIKDTNLYVTNLPRTITDDQLDTIFGKYGSI-VQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159 (168)
T ss_dssp CCSS-TTTTCEEEEESCCTTCCHHHHHHHHTSSSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc-cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcE-EEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC
Confidence 6653 3456799999999999999999999999998 578999998899999999999999999999999999999988
Q ss_pred -eeeEEeee
Q 017119 182 -RQITVSYA 189 (377)
Q Consensus 182 -~~l~v~~a 189 (377)
+.|+|+||
T Consensus 160 ~~~l~V~~A 168 (168)
T 1b7f_A 160 SQPLSVRLA 168 (168)
T ss_dssp SSCCEEEEC
T ss_pred CeEEEEEeC
Confidence 99999986
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3e-34 Score=240.90 Aligned_cols=165 Identities=33% Similarity=0.504 Sum_probs=153.5
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
.+++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred cCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCe
Q 017119 103 QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNR 182 (377)
Q Consensus 103 ~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~ 182 (377)
.... ....++|||+||++++++++|+++|++||.| ..+++..+..+|.++|||||+|.+.++|.+|++.|++..++|+
T Consensus 81 ~~~~-~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 81 PSSA-SIRDANLYVSGLPKTMTQKELEQLFSQYGRI-ITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCCG-GGTTCEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred CCcc-cCCCCcEEECCCCCcCCHHHHHHHHHhcCCE-eEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 6553 3345789999999999999999999999998 5788999988999999999999999999999999999999997
Q ss_pred e--eEEeee
Q 017119 183 Q--ITVSYA 189 (377)
Q Consensus 183 ~--l~v~~a 189 (377)
. |+|+||
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 5 888875
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.1e-34 Score=250.28 Aligned_cols=176 Identities=26% Similarity=0.431 Sum_probs=153.3
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
...+....++|||+||+.++|+++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++. ++..+.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV 84 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence 344556789999999999999999999999999999999999998999999999999999999999984 8899999999
Q ss_pred EEeecCcCccc-----cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHH
Q 017119 97 RVNKASQDKKS-----LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAI 171 (377)
Q Consensus 97 ~v~~~~~~~~~-----~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~ 171 (377)
.|.++...... ....++|||+||++++++++|+++|+.||.| ..+++.++..++.++|||||+|.+.++|.+|+
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI-EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCe-EEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 99998765432 2234789999999999999999999999998 67899999889999999999999999999999
Q ss_pred HHHcCceecCeeeEEeeeeecCcC
Q 017119 172 EAMNGQYLCNRQITVSYAYKKDTK 195 (377)
Q Consensus 172 ~~l~~~~~~g~~l~v~~a~~~~~~ 195 (377)
+. ++..++|+.|+|+|+..+...
T Consensus 164 ~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 164 IQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp HC-SCCEETTEECEEEECC-----
T ss_pred Hh-CCcEECCEEEEEEecCChhHh
Confidence 86 799999999999999877543
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.5e-34 Score=251.86 Aligned_cols=174 Identities=27% Similarity=0.482 Sum_probs=157.3
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
......++|||+||+.++|+++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 23 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 23 GALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred cccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 33456789999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eecCcCcc----------ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHH
Q 017119 99 NKASQDKK----------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 168 (377)
Q Consensus 99 ~~~~~~~~----------~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~ 168 (377)
.++..... .....++|||+||++++++++|+++|++||.| ..+++.++..++.++|||||+|.+.++|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 103 GRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKI-KSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp ECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred ecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCe-eEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 98766542 23456799999999999999999999999998 67899999999999999999999999999
Q ss_pred HHHHHHcCceecCeeeEEeeeeecC
Q 017119 169 AAIEAMNGQYLCNRQITVSYAYKKD 193 (377)
Q Consensus 169 ~a~~~l~~~~~~g~~l~v~~a~~~~ 193 (377)
+|++.|++..|+|+.|+|+|+....
T Consensus 182 ~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 182 DAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred HHHHHccCCEeCCcEEEEEEecCCC
Confidence 9999999999999999999997654
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.7e-33 Score=238.25 Aligned_cols=166 Identities=30% Similarity=0.461 Sum_probs=152.1
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCC--CccceEEEEeCCHHHHHHHHHHhcCcccC---CceeE
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTN--LHQGYGFVEFRSEEDADYAIKVLNMIKLY---GKPIR 97 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~--~~~g~afV~f~~~e~A~~A~~~l~~~~~~---g~~i~ 97 (377)
++++|||+||+.++|+++|+++|++||.|.+|+++.+..++ .++|||||+|.+.++|++|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998776 89999999999999999999999998776 68888
Q ss_pred EeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 98 v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
+.++..........++|||+||++++++++|+++|+.||.| ..+++.++. +|.++|||||+|.+.++|.+|++.|++.
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i-~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQI-EECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQA 159 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTS
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCE-EEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCC
Confidence 88888777666677899999999999999999999999998 678888884 6899999999999999999999999998
Q ss_pred eec---CeeeEEeeee
Q 017119 178 YLC---NRQITVSYAY 190 (377)
Q Consensus 178 ~~~---g~~l~v~~a~ 190 (377)
.+. ++.|+|+||.
T Consensus 160 ~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 160 QTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CCCTTCSSCCEEEECC
T ss_pred cccCCCCCCeEEEecC
Confidence 776 4999999973
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.9e-34 Score=242.29 Aligned_cols=165 Identities=32% Similarity=0.534 Sum_probs=151.8
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
++++|||+||+.++|+++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++ ++..++|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 57899999999999999999999999999999999998899999999999999999999999 4678999999999886
Q ss_pred cCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCe
Q 017119 103 QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNR 182 (377)
Q Consensus 103 ~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~ 182 (377)
.... ....++|||+||++++++++|+++|+.||.| ..+++.++..++.++|||||+|.+.++|.+|++ +++..++|+
T Consensus 80 ~~~~-~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 80 PRDE-QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTI-IDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp CHHH-HHHCEEEEEEEECTTCCHHHHHHHHHTTSCC-SEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred chhh-ccCCCeEEECCCCCCCCHHHHHHHHHhCccE-EEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 5542 2345689999999999999999999999998 578999998899999999999999999999998 899999999
Q ss_pred eeEEeeeeec
Q 017119 183 QITVSYAYKK 192 (377)
Q Consensus 183 ~l~v~~a~~~ 192 (377)
.|+|+|+..+
T Consensus 157 ~i~V~~a~pk 166 (167)
T 2cjk_A 157 KIEIKRAEPR 166 (167)
T ss_dssp CEEEEECCCC
T ss_pred EEEEeecCCC
Confidence 9999999764
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1.8e-32 Score=231.33 Aligned_cols=160 Identities=27% Similarity=0.529 Sum_probs=145.9
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhc----C-------CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQA----G-------PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~----G-------~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~ 90 (377)
+++++|||+||+.++|+++|+++|++| | .|.++++. .++|||||+|.+.++|++|+ .+++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 357899999999999999999999999 6 77777774 45799999999999999999 799999
Q ss_pred cCCceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHH
Q 017119 91 LYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAA 170 (377)
Q Consensus 91 ~~g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a 170 (377)
+.|+.|+|.++..... ....++|||+||++++++++|+++|++||.| ..+++.++..++.++|||||+|.+.++|++|
T Consensus 75 ~~g~~i~v~~~~~~~~-~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQP-LPGAHKLFIGGLPNYLNDDQVKELLTSFGPL-KAFNLVKDSATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp ETTEECEEECCSSCCC-CTTTTCEEEECCCTTCCHHHHHHHHHTTSCE-EEEEEEECTTTCSEEEEEEEEESSTTHHHHH
T ss_pred ecCceeeecCCcccCC-CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCc-eEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 9999999999866543 3346789999999999999999999999998 6789999988999999999999999999999
Q ss_pred HHHHcCceecCeeeEEeeee
Q 017119 171 IEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 171 ~~~l~~~~~~g~~l~v~~a~ 190 (377)
++.|++..++|+.|+|+||.
T Consensus 153 ~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 153 IAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHTTCEETTEECEEEECC
T ss_pred HHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999984
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=2.7e-32 Score=235.62 Aligned_cols=165 Identities=27% Similarity=0.512 Sum_probs=146.6
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhc----C-------CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQA----G-------PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~----G-------~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~ 90 (377)
+.+++|||+||+.++++++|+++|++| | .|.++++ +.++|||||+|.+.++|++|+ .|++..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 357899999999999999999999999 5 5666666 456899999999999999999 799999
Q ss_pred cCCceeEEeecCcCccc-------------------cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCC
Q 017119 91 LYGKPIRVNKASQDKKS-------------------LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTG 151 (377)
Q Consensus 91 ~~g~~i~v~~~~~~~~~-------------------~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~ 151 (377)
+.|+.|+|+++...... ....++|||+||++++++++|+++|++||.| ..+++.++..++
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v-~~~~~~~~~~~~ 153 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPL-KAFNLVKDSATG 153 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCE-EEEEEEECTTTC
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCc-cEEEEeecCCCC
Confidence 99999999988654211 1345789999999999999999999999998 678999998899
Q ss_pred CCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecCc
Q 017119 152 NSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDT 194 (377)
Q Consensus 152 ~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~~ 194 (377)
.++|||||+|.+.++|.+|++.|++..++|+.|+|+|+..+..
T Consensus 154 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 154 LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp SEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999999999999999999999987643
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1.3e-31 Score=244.53 Aligned_cols=164 Identities=24% Similarity=0.443 Sum_probs=145.6
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHH----HHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCc
Q 017119 19 AERNQDATAYVGNLDPQVTEELLW----ELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK 94 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~----~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~ 94 (377)
.+...+++|||+||+.++++++|+ ++|++||.|.+|++++ ++.++|||||+|.+.++|++|++.|++..+.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 356678999999999999999977 8999999999999876 577999999999999999999999999999999
Q ss_pred eeEEeecCcCcc--------------------------------------------------------------------
Q 017119 95 PIRVNKASQDKK-------------------------------------------------------------------- 106 (377)
Q Consensus 95 ~i~v~~~~~~~~-------------------------------------------------------------------- 106 (377)
.|+|+++.....
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 999998865431
Q ss_pred ------------------------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeeccee
Q 017119 107 ------------------------------------------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144 (377)
Q Consensus 107 ------------------------------------------~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i 144 (377)
.....++|||+||++++++++|+++|++||.| ..+++
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i-~~v~~ 239 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGF-KEVRL 239 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCe-EEEEE
Confidence 11134679999999999999999999999998 56777
Q ss_pred ecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceec-CeeeEEeeeee
Q 017119 145 MRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC-NRQITVSYAYK 191 (377)
Q Consensus 145 ~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~a~~ 191 (377)
+.++ +|||||+|.+.++|.+|++.|++..++ |+.|+|+|+++
T Consensus 240 ~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 240 VPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred ecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 7553 689999999999999999999999999 99999999863
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=1.2e-32 Score=233.27 Aligned_cols=166 Identities=22% Similarity=0.389 Sum_probs=146.1
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
.+....++|||+||+.++++++|+++|++||.+.. .++.+..++.++|||||+|.+.++|++|++ |++..+.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 45678899999999999999999999999998766 344444568899999999999999999995 9999999999999
Q ss_pred eecCcCcc-ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 99 NKASQDKK-SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 99 ~~~~~~~~-~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
.++..... .....++|||+||++++++++|+++|+.||.|. ++ ..++.++|||||+|.+.++|.+|++.|++.
T Consensus 86 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~----~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 1fje_B 86 EKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIR----LV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGA 159 (175)
T ss_dssp ECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEE----EE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEE
T ss_pred ecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEE----Ee--cCCCCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 99876543 334457899999999999999999999999872 22 477899999999999999999999999999
Q ss_pred eecCeeeEEeeeeec
Q 017119 178 YLCNRQITVSYAYKK 192 (377)
Q Consensus 178 ~~~g~~l~v~~a~~~ 192 (377)
.++|+.|+|+|+..+
T Consensus 160 ~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 160 EIDGRSVSLYYTGEK 174 (175)
T ss_dssp EETTEEEEEEECSSC
T ss_pred EECCeEEEEEecCCC
Confidence 999999999999754
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=1.6e-31 Score=231.54 Aligned_cols=160 Identities=21% Similarity=0.251 Sum_probs=138.6
Q ss_pred CCCeEEEcCCC-cCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 23 QDATAYVGNLD-PQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 23 ~~~~l~v~nLp-~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
.+++|||+||+ .++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.||+..+.|+.|+|+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999775 4799999999999999999999999999999999988
Q ss_pred CcCccc------------------------------------cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCee-eccee
Q 017119 102 SQDKKS------------------------------------LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV-TNPKI 144 (377)
Q Consensus 102 ~~~~~~------------------------------------~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv-~~~~i 144 (377)
...... ....++|||+||++.+++++|+++|++||.|+ ..+++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 532110 01234799999999999999999999999982 56777
Q ss_pred ecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCe----eeEEeee
Q 017119 145 MRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNR----QITVSYA 189 (377)
Q Consensus 145 ~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~----~l~v~~a 189 (377)
+.++ +.++|||||+|.+.++|.+||+.||+..|.|+ .+.|+|+
T Consensus 158 ~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 7764 56679999999999999999999999999886 4666665
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=2.1e-31 Score=243.24 Aligned_cols=171 Identities=23% Similarity=0.309 Sum_probs=157.2
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
..+++|||+||+.++++++|+++|++||.|.+++++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CcCcc--ccCCCCeEEEcCCCCcC-CHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCce
Q 017119 102 SQDKK--SLDVGANLFIGNLDPDV-DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 178 (377)
Q Consensus 102 ~~~~~--~~~~~~~l~V~nl~~~~-~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~ 178 (377)
..... .....++|||+||++++ ++++|+++|+.||.| ..++|.++. +|.++|||||+|.+.++|.+|++.|++..
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i-~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 250 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSP-TFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLS 250 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCC-SEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCe-EEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCc
Confidence 76653 23356789999999995 999999999999998 577888885 79999999999999999999999999999
Q ss_pred ecCeeeEEeeeeecCc
Q 017119 179 LCNRQITVSYAYKKDT 194 (377)
Q Consensus 179 ~~g~~l~v~~a~~~~~ 194 (377)
++|+.|+|+|+..+..
T Consensus 251 ~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 251 LGGSHLRVSFCAPGPP 266 (284)
T ss_dssp ETTEECEEEECCSSSC
T ss_pred cCCeEEEEEEecCCCc
Confidence 9999999999987654
No 15
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=1.5e-30 Score=230.07 Aligned_cols=164 Identities=27% Similarity=0.391 Sum_probs=144.3
Q ss_pred CccccCCCCeEEEcCCCc-CCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 17 HSAERNQDATAYVGNLDP-QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~-~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
.......+++|||+||+. ++++++|+++|++||.|.+|+++.+. +|||||+|.+.++|++|++.|++..+.|+.
T Consensus 27 p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 27 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp GGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred CCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 344556789999999999 99999999999999999999998864 789999999999999999999999999999
Q ss_pred eEEeecCcCccc----------------------------------cCCCCeEEEcCCCCcCCHHHHHHHHhhcC-Ceee
Q 017119 96 IRVNKASQDKKS----------------------------------LDVGANLFIGNLDPDVDEKLLYDTFSAFG-VIVT 140 (377)
Q Consensus 96 i~v~~~~~~~~~----------------------------------~~~~~~l~V~nl~~~~~~~~l~~~f~~~G-~vv~ 140 (377)
|+|.++...... ....++|||+||++++++++|+++|++|| .| .
T Consensus 102 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i-~ 180 (229)
T 2adc_A 102 IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV-K 180 (229)
T ss_dssp CEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCE-E
T ss_pred EEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCe-e
Confidence 999988644100 11247899999999999999999999999 77 5
Q ss_pred cceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceec-CeeeEEeeeee
Q 017119 141 NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC-NRQITVSYAYK 191 (377)
Q Consensus 141 ~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~a~~ 191 (377)
.++++.+ .+|||||+|.+.++|.+|++.|++..++ |+.|+|+|++.
T Consensus 181 ~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 181 GFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred EEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 6677543 4789999999999999999999999999 99999999875
No 16
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=9.9e-31 Score=226.01 Aligned_cols=159 Identities=28% Similarity=0.410 Sum_probs=141.1
Q ss_pred CCCeEEEcCCCc-CCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 23 QDATAYVGNLDP-QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 23 ~~~~l~v~nLp~-~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
.+++|||+||+. ++++++|+++|++||.|.+|+++.+. +|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998764 789999999999999999999999999999999988
Q ss_pred CcCccc----------------------------------cCCCCeEEEcCCCCcCCHHHHHHHHhhcC-Ceeecceeec
Q 017119 102 SQDKKS----------------------------------LDVGANLFIGNLDPDVDEKLLYDTFSAFG-VIVTNPKIMR 146 (377)
Q Consensus 102 ~~~~~~----------------------------------~~~~~~l~V~nl~~~~~~~~l~~~f~~~G-~vv~~~~i~~ 146 (377)
...... ....++|||+||++++++++|+++|+.|| .| ..++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v-~~v~i~~ 155 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV-KGFKFFQ 155 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCC-CEEEESS
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCc-eEEEEEe
Confidence 644210 11256899999999999999999999999 76 5667765
Q ss_pred CCCCCCCcceEEEEeCCHHHHHHHHHHHcCceec-CeeeEEeeeeec
Q 017119 147 DPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC-NRQITVSYAYKK 192 (377)
Q Consensus 147 d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~a~~~ 192 (377)
+ .+|||||+|.+.++|.+|++.|++..++ |+.|+|+|++.+
T Consensus 156 ~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 156 K-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp T-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred C-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 4 3789999999999999999999999999 999999998753
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.1e-30 Score=239.45 Aligned_cols=169 Identities=27% Similarity=0.449 Sum_probs=146.6
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcC-CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAG-PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
....++|||+||+.++++++|+++|+.|| .|.+|+++.+.. +.++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 114 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 192 (292)
T 2ghp_A 114 HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTK 192 (292)
T ss_dssp ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34789999999999999999999999999 999999998875 7789999999999999999999999999999999999
Q ss_pred ecCcCccc------cCCCCeEEEcCCCCc-CCHHHHHHHHhhcCCeeecceeecCCC-CCCCcceEEEEeCCHHHHHHHH
Q 017119 100 KASQDKKS------LDVGANLFIGNLDPD-VDEKLLYDTFSAFGVIVTNPKIMRDPD-TGNSRGFGFISYDSFEASDAAI 171 (377)
Q Consensus 100 ~~~~~~~~------~~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~vv~~~~i~~d~~-~~~~kg~afV~f~~~~~A~~a~ 171 (377)
++...... ....++|||+||++. +++++|+++|+.||.| ..+++.++.. |+.++|||||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v-~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSI-EKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCE-EEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCe-eEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 98765432 234578999999999 9999999999999998 5678888866 5999999999999999999999
Q ss_pred HHHcCceecCeeeEEeeeeec
Q 017119 172 EAMNGQYLCNRQITVSYAYKK 192 (377)
Q Consensus 172 ~~l~~~~~~g~~l~v~~a~~~ 192 (377)
.|++..|+|+.|+|+|+..+
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCC
T ss_pred -HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999765
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=4.1e-30 Score=231.72 Aligned_cols=161 Identities=30% Similarity=0.514 Sum_probs=145.4
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
......+++|||+||+.++|+++|+++|+.||.|.+|++.+ ++|||||+|.+.++|++|++.+++..+.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 16 EKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp CCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 33446778999999999999999999999999999999954 468999999999999999999999999999999
Q ss_pred EeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHc-C
Q 017119 98 VNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-G 176 (377)
Q Consensus 98 v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~-~ 176 (377)
|.++.. ..+|||+||++.+++++|+++|+.||.| ..++++.| .+|.++|||||+|.+.++|.+|++.|+ +
T Consensus 90 v~~a~~-------~~~l~v~nl~~~~t~~~l~~~F~~~G~i-~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 90 IRFATH-------GAALTVKNLSPVVSNELLEQAFSQFGPV-EKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp EEECCC-------SSEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred eeeccc-------CCcccccCCCCCCCHHHHHHHHHhcCCe-EEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 999864 4589999999999999999999999998 57788888 689999999999999999999999995 5
Q ss_pred ceec---CeeeEEeeeeecC
Q 017119 177 QYLC---NRQITVSYAYKKD 193 (377)
Q Consensus 177 ~~~~---g~~l~v~~a~~~~ 193 (377)
..+. ++.|.|+++....
T Consensus 161 ~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 161 AFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp CEESSSSCCBCEEEECCCEE
T ss_pred eEEecCCCceEEEeeccccC
Confidence 5554 8999999998654
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=6.7e-30 Score=233.30 Aligned_cols=160 Identities=21% Similarity=0.336 Sum_probs=148.5
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
+...+++|||+||+.++|+++|+++|++|| |.+|++ +.++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~ 90 (284)
T 3smz_A 18 QFRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQ 90 (284)
T ss_dssp HHHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEE
Confidence 445789999999999999999999999999 999988 4578999999999999999999999999999999999
Q ss_pred ecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCcee
Q 017119 100 KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 179 (377)
Q Consensus 100 ~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~ 179 (377)
++.. .++|||+||++++++++|+++|+.||.| ..++++++..+|.++|||||+|.+.++|.+|++.|++..+
T Consensus 91 ~~~~-------~~~l~v~nlp~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~ 162 (284)
T 3smz_A 91 LQPT-------DALLCVANLPPSLTQQQFEELVRPFGSL-ERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL 162 (284)
T ss_dssp ECCC-------SCEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ecCC-------CCEEEEcCCCCcCCHHHHHHHHHhcCCe-eEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 8653 3589999999999999999999999998 6788999989999999999999999999999999999999
Q ss_pred cCeeeEEeeeeecCc
Q 017119 180 CNRQITVSYAYKKDT 194 (377)
Q Consensus 180 ~g~~l~v~~a~~~~~ 194 (377)
+|+.|+|.|+..+..
T Consensus 163 ~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 163 GPRTLYVHWTDAGQL 177 (284)
T ss_dssp TTEECEEEECCGGGC
T ss_pred CCcEEEEEECCCCCC
Confidence 999999999987653
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=4.7e-30 Score=235.30 Aligned_cols=168 Identities=18% Similarity=0.246 Sum_probs=139.0
Q ss_pred CCCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 14 ~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
.+.........++|||+||+.++|+++|+++|++||.|.+|+++.+... ++|||||+|.+.++|++|++ +++..+.|
T Consensus 31 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~~g 107 (292)
T 2ghp_A 31 ANEALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVVGQ 107 (292)
T ss_dssp -----------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEETT
T ss_pred cccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEeCC
Confidence 3344555678999999999999999999999999999999999998733 58999999999999999996 99999999
Q ss_pred ceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcC-CeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHH
Q 017119 94 KPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG-VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172 (377)
Q Consensus 94 ~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G-~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~ 172 (377)
+.|+|.++. .++|||+||++++++++|+++|+.|| .| ..+++.++.. +.++|||||+|.+.++|.+|++
T Consensus 108 ~~i~v~~~~--------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i-~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 108 NEIIVSHLT--------ECTLWMTNFPPSYTQRNIRDLLQDINVVA-LSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp EECEEEECC--------SCEEEEECCCTTCCHHHHHHHHHHTTCCC-CEEECC--------CCEEEEECSSHHHHHHHHH
T ss_pred cEEEEEECC--------CCEEEEECCCCCCCHHHHHHHHHHhCCCe-EEEEEEeCCC-CCcceEEEEEECCHHHHHHHHH
Confidence 999999863 56899999999999999999999999 87 5778888755 8899999999999999999999
Q ss_pred HHcCceecCeeeEEeeeeecCc
Q 017119 173 AMNGQYLCNRQITVSYAYKKDT 194 (377)
Q Consensus 173 ~l~~~~~~g~~l~v~~a~~~~~ 194 (377)
.|++..++|+.|+|.|+..+..
T Consensus 178 ~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp HHTTCEETTEECEEEECCCC--
T ss_pred HhCCCEeCCcEEEEEECCCCcc
Confidence 9999999999999999976543
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=1.2e-23 Score=174.84 Aligned_cols=139 Identities=19% Similarity=0.219 Sum_probs=112.7
Q ss_pred EEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe-------ecCc-----CccccCCCCeEEEcCCC
Q 017119 53 NVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN-------KASQ-----DKKSLDVGANLFIGNLD 120 (377)
Q Consensus 53 ~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~-------~~~~-----~~~~~~~~~~l~V~nl~ 120 (377)
.++|+.+. ..++|||||+|.+.++|++|++.+++....+..+.+. .... ........++|||+||+
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 45666665 3689999999999999999998877533332222222 1111 11222345789999999
Q ss_pred CcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecCc
Q 017119 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDT 194 (377)
Q Consensus 121 ~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~~ 194 (377)
+++++++|+++|+.||.| ..++|.+|+.++.++|||||+|.+.++|++|++.|++..++|+.|+|+|++.+..
T Consensus 80 ~~~~~~~l~~~F~~~G~v-~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRV-GDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp TTCCHHHHHHHHHHHSCE-EEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CCCCHHHHHHHHHhcCCe-EEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 999999999999999998 6789999999999999999999999999999999999999999999999987654
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=7.3e-22 Score=162.47 Aligned_cols=123 Identities=19% Similarity=0.364 Sum_probs=109.2
Q ss_pred CCccceEEEEeCCHHHHHHHHHHh-cCcccCCceeEEeecCcC---------------ccccCCCCeEEEcCCCCcCCHH
Q 017119 63 NLHQGYGFVEFRSEEDADYAIKVL-NMIKLYGKPIRVNKASQD---------------KKSLDVGANLFIGNLDPDVDEK 126 (377)
Q Consensus 63 ~~~~g~afV~f~~~e~A~~A~~~l-~~~~~~g~~i~v~~~~~~---------------~~~~~~~~~l~V~nl~~~~~~~ 126 (377)
...+|+++|+|.+.++|++|++.+ ++..++| .|+++++... .......++|||+||+++++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 456899999999999999999999 9999999 9999987652 1223445789999999999999
Q ss_pred HHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeec
Q 017119 127 LLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192 (377)
Q Consensus 127 ~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~ 192 (377)
+|+++|++||.| ..+++.++ ++|||||+|.+.++|.+|++.|++..++|+.|+|+|++.+
T Consensus 89 ~l~~~F~~~G~i-~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 89 ELERAFGYYGPL-RSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHHSCE-EEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHHhhCCE-EEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 999999999998 56788765 6899999999999999999999999999999999999765
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.87 E-value=3.3e-22 Score=156.79 Aligned_cols=103 Identities=26% Similarity=0.451 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
.+.+|||+||+.++++++|+++|++||.|.+|+|+.+. +.++|||||+|.+.++|++|++.|++..++|+.|+|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999986 4589999999999999999999999999999999999987
Q ss_pred cCccc-------cCCCCeEEEcCCCCcCCHHH
Q 017119 103 QDKKS-------LDVGANLFIGNLDPDVDEKL 127 (377)
Q Consensus 103 ~~~~~-------~~~~~~l~V~nl~~~~~~~~ 127 (377)
.+... .....+|||+||+.++|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCccccc
Confidence 65421 12234799999999998763
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=143.15 Aligned_cols=82 Identities=33% Similarity=0.573 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
..+++|||+||++++++++|+++|++||.| ..+++.+|+.+|.++|||||+|.+.++|++|++.||+..++|+.|+|+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEV-ESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345689999999999999999999999998 6789999999999999999999999999999999999999999999999
Q ss_pred eee
Q 017119 189 AYK 191 (377)
Q Consensus 189 a~~ 191 (377)
|+.
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred eeC
Confidence 964
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=141.60 Aligned_cols=82 Identities=33% Similarity=0.486 Sum_probs=78.1
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
.+.++|||+||+.++|+++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|++|++.|++..+.|+.|+|+++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc
Q 017119 102 SQ 103 (377)
Q Consensus 102 ~~ 103 (377)
..
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 53
No 26
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1.4e-20 Score=151.68 Aligned_cols=126 Identities=19% Similarity=0.239 Sum_probs=82.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeec
Q 017119 67 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMR 146 (377)
Q Consensus 67 g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~ 146 (377)
-++|++|.++..+..|++.+++....++. ...+... .......++|||+||++++++++|+++|++||.| ..++|.+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~-~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~~ 81 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP-PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRV-GDVYIPR 81 (135)
T ss_dssp -------------------------------CCSCCS-CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCC-SEEECCC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC-CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEe
Confidence 36889999999999999988876655543 2222222 2334456789999999999999999999999998 5789999
Q ss_pred CCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecCcC
Q 017119 147 DPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195 (377)
Q Consensus 147 d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~~~ 195 (377)
++.++.++|||||+|.+.++|++|++.|++..|+|+.|+|+|++.+...
T Consensus 82 ~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 82 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9889999999999999999999999999999999999999999876543
No 27
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=5e-20 Score=138.52 Aligned_cols=82 Identities=18% Similarity=0.381 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCe-eecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc----eecCeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVI-VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ----YLCNRQI 184 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~v-v~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~----~~~g~~l 184 (377)
.-++|||+||++++|+++|+++|++||.+ +.++++++|+.++.+||||||+|.+.++|++|++.|++. .++|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 34689999999999999999999999975 568899999999999999999999999999999999987 5899999
Q ss_pred EEeeeee
Q 017119 185 TVSYAYK 191 (377)
Q Consensus 185 ~v~~a~~ 191 (377)
+|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999964
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=3.5e-20 Score=138.75 Aligned_cols=83 Identities=17% Similarity=0.304 Sum_probs=77.0
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcC-CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHh-cCcccCCceeEEeec
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAG-PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL-NMIKLYGKPIRVNKA 101 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l-~~~~~~g~~i~v~~~ 101 (377)
+++|||+||+.++||++|+++|++|| .|.+|+|++++.++.++|||||+|.+.++|++|++.+ ++..++|+.|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 8999999999999999999999999999999999977 456799999999999
Q ss_pred CcCcc
Q 017119 102 SQDKK 106 (377)
Q Consensus 102 ~~~~~ 106 (377)
..+..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 29
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.7e-19 Score=135.70 Aligned_cols=91 Identities=18% Similarity=0.239 Sum_probs=83.7
Q ss_pred CCCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 14 ~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
......+....++|||+||+.++++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|++|++.|++..+.|
T Consensus 7 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 85 (100)
T 2do4_A 7 GVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKE 85 (100)
T ss_dssp SCCCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCcCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34455566788999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred ceeEEeecCcCc
Q 017119 94 KPIRVNKASQDK 105 (377)
Q Consensus 94 ~~i~v~~~~~~~ 105 (377)
+.|+|.++....
T Consensus 86 ~~l~v~~a~~~~ 97 (100)
T 2do4_A 86 NIIKVAISNSGP 97 (100)
T ss_dssp CEEEEEECCCCS
T ss_pred EEEEEEECCCCC
Confidence 999999987654
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.80 E-value=9.6e-20 Score=136.31 Aligned_cols=84 Identities=19% Similarity=0.399 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHc-CceecCeeeEEeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN-GQYLCNRQITVSYA 189 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~-~~~~~g~~l~v~~a 189 (377)
+++|||+||++++|+++|+++|++||..+.+++|++|+.++.+||||||+|.+.++|++|++.++ +..++|+.|+|+|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999434788999999999999999999999999999999874 56799999999999
Q ss_pred eecCc
Q 017119 190 YKKDT 194 (377)
Q Consensus 190 ~~~~~ 194 (377)
..+..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 31
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=139.32 Aligned_cols=84 Identities=21% Similarity=0.226 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
...++|||+||+.++++++|+++|++||.|.+|+|+.|..++.++|||||+|.+.++|++|++.||+..+.|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcCc
Q 017119 102 SQDK 105 (377)
Q Consensus 102 ~~~~ 105 (377)
...+
T Consensus 84 ~~~~ 87 (110)
T 3s8s_A 84 IKGQ 87 (110)
T ss_dssp STTH
T ss_pred CCCc
Confidence 6543
No 32
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.1e-19 Score=136.19 Aligned_cols=94 Identities=73% Similarity=1.132 Sum_probs=86.2
Q ss_pred CCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCc
Q 017119 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK 94 (377)
Q Consensus 15 ~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~ 94 (377)
+....+....++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 6 SGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp SCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 34455667889999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred eeEEeecCcCcccc
Q 017119 95 PIRVNKASQDKKSL 108 (377)
Q Consensus 95 ~i~v~~~~~~~~~~ 108 (377)
.|+|.++.......
T Consensus 86 ~l~v~~a~~~~~~~ 99 (105)
T 1x5u_A 86 PIRVNKASAHNKNL 99 (105)
T ss_dssp BCEEEETTTTSCCC
T ss_pred EEEEEECCCCCcCC
Confidence 99999998776433
No 33
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=6.3e-19 Score=138.06 Aligned_cols=94 Identities=30% Similarity=0.439 Sum_probs=86.5
Q ss_pred CCCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 14 ~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
.+....+....++|||+||+.++++++|+++|++||.|.+|+|+.+..++.++|||||+|.+.++|++|++.|++..+.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 5 SSGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp CCSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34556677789999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred ceeEEeecCcCccc
Q 017119 94 KPIRVNKASQDKKS 107 (377)
Q Consensus 94 ~~i~v~~~~~~~~~ 107 (377)
+.|+|+++..+...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 85 RQIRTNWATRKPPA 98 (115)
T ss_dssp EECEEEESSCCCCC
T ss_pred EEEEEEEccCCCCC
Confidence 99999999876543
No 34
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=2.2e-19 Score=140.70 Aligned_cols=106 Identities=19% Similarity=0.290 Sum_probs=95.3
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
...+++|||+||+.++++++|+++|++||.|.+|+++.+ +.++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999999875 44589999999999999999999999999999999999
Q ss_pred cCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCe
Q 017119 101 ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138 (377)
Q Consensus 101 ~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~v 138 (377)
+...... .++....++++|.++|++||.-
T Consensus 82 a~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~ 110 (115)
T 3lqv_A 82 YNANRAF---------QKMDTKKKEEQLKLLKEKYGIN 110 (115)
T ss_dssp CCHHHHT---------TTSCHHHHHHHHHHHHHHHCCC
T ss_pred ecCChhh---------hhhhHhHhHHHHHHHHHHhCCC
Confidence 9866543 4677888999999999999954
No 35
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.80 E-value=2e-19 Score=150.22 Aligned_cols=124 Identities=26% Similarity=0.428 Sum_probs=79.0
Q ss_pred EEeCCHHHHHHHHHHhcCcccC--CceeEEeecCc-------------------CccccCCCCeEEEcCCCCcCCHHHHH
Q 017119 71 VEFRSEEDADYAIKVLNMIKLY--GKPIRVNKASQ-------------------DKKSLDVGANLFIGNLDPDVDEKLLY 129 (377)
Q Consensus 71 V~f~~~e~A~~A~~~l~~~~~~--g~~i~v~~~~~-------------------~~~~~~~~~~l~V~nl~~~~~~~~l~ 129 (377)
.+|.+.++|+.|+..+++.... |+.++..+... ........++|||+||++++++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6788888888888888765544 44444443211 01122334679999999999999999
Q ss_pred HHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecCcC
Q 017119 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTK 195 (377)
Q Consensus 130 ~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~~~ 195 (377)
++|++||.| ..+.|+.++.++.++|||||+|.+.++|++||+.|++..|+|+.|.|.|+..+...
T Consensus 91 ~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKFCDYGEI-KNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHGGGSCE-EEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHhhcCCCE-EEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 999999998 67899999999999999999999999999999999999999999999999877543
No 36
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=138.14 Aligned_cols=82 Identities=16% Similarity=0.261 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||++++++++|+++|++||.| .+++|++|..++++||||||+|.+.++|++|++.||+..++|+.|+|+++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i-~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEV-EEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCe-eEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35689999999999999999999999998 67899999999999999999999999999999999999999999999999
Q ss_pred eec
Q 017119 190 YKK 192 (377)
Q Consensus 190 ~~~ 192 (377)
..+
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 37
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.1e-19 Score=137.35 Aligned_cols=92 Identities=28% Similarity=0.305 Sum_probs=83.9
Q ss_pred CCCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 14 ~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
......+....++|||+||+.++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++|++.+++ .+.|
T Consensus 7 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g 85 (116)
T 2cqd_A 7 GMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG 85 (116)
T ss_dssp CCCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT
T ss_pred CCCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC
Confidence 344556667889999999999999999999999999999999999998999999999999999999999999998 8999
Q ss_pred ceeEEeecCcCcc
Q 017119 94 KPIRVNKASQDKK 106 (377)
Q Consensus 94 ~~i~v~~~~~~~~ 106 (377)
+.|+|+++.....
T Consensus 86 ~~l~V~~a~~~~~ 98 (116)
T 2cqd_A 86 RKANVNLAYLGAK 98 (116)
T ss_dssp EECEEEESTTTCC
T ss_pred EEEEEEEcccCCC
Confidence 9999999976543
No 38
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.3e-19 Score=132.71 Aligned_cols=88 Identities=30% Similarity=0.389 Sum_probs=82.0
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
....+...+++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 7 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 44555677899999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred eEEeecCc
Q 017119 96 IRVNKASQ 103 (377)
Q Consensus 96 i~v~~~~~ 103 (377)
|+|.+++.
T Consensus 87 l~v~~a~~ 94 (95)
T 2cqc_A 87 IRVSGPSS 94 (95)
T ss_dssp EEEECCSC
T ss_pred EEEEecCC
Confidence 99999864
No 39
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.7e-19 Score=133.12 Aligned_cols=88 Identities=26% Similarity=0.344 Sum_probs=82.3
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
+....++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34578899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecCcCccc
Q 017119 100 KASQDKKS 107 (377)
Q Consensus 100 ~~~~~~~~ 107 (377)
++..+...
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99877643
No 40
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=2e-19 Score=135.25 Aligned_cols=84 Identities=25% Similarity=0.399 Sum_probs=77.5
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCC--eEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCc----ccCC
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGP--VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMI----KLYG 93 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~--i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~----~~~g 93 (377)
.+..-.||||+||+.++|+++|+++|++||. |.+|++++|+.++.+||||||+|.+.++|++|++.|++. .++|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4456789999999999999999999999995 679999999999999999999999999999999999986 5899
Q ss_pred ceeEEeecCc
Q 017119 94 KPIRVNKASQ 103 (377)
Q Consensus 94 ~~i~v~~~~~ 103 (377)
+.|+|++++.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999864
No 41
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.2e-19 Score=135.26 Aligned_cols=91 Identities=27% Similarity=0.376 Sum_probs=84.5
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
....+....++|||+||+.++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 7 GPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp CSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34456678899999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred eEEeecCcCcc
Q 017119 96 IRVNKASQDKK 106 (377)
Q Consensus 96 i~v~~~~~~~~ 106 (377)
|+|.++..+..
T Consensus 87 l~v~~a~~~~~ 97 (103)
T 2cq0_A 87 LNVEWAKPSTN 97 (103)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987653
No 42
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=8e-19 Score=137.46 Aligned_cols=90 Identities=24% Similarity=0.368 Sum_probs=83.2
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
...+....++|||+||+.++++++|+++|++||.|.+|+|+.+..++.++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455577899999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred EEeecCcCcc
Q 017119 97 RVNKASQDKK 106 (377)
Q Consensus 97 ~v~~~~~~~~ 106 (377)
+|+++..+..
T Consensus 98 ~V~~a~~~~~ 107 (115)
T 2cpz_A 98 KVQLKRSKND 107 (115)
T ss_dssp EEECCCCSCC
T ss_pred EEEEcCCCCc
Confidence 9999987654
No 43
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=134.29 Aligned_cols=91 Identities=27% Similarity=0.476 Sum_probs=84.1
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEecc-CCCCCccceEEEEeCCHHHHHHHHHHh-cCcccCC
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKD-RVTNLHQGYGFVEFRSEEDADYAIKVL-NMIKLYG 93 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~-~~~~~~~g~afV~f~~~e~A~~A~~~l-~~~~~~g 93 (377)
....+....++|||+||+.++++++|+++|++||.|.+|+|+.+ ..++.++|||||+|.+.++|++|++.| ++..+.|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 7 GQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp CSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred cccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 34556678899999999999999999999999999999999998 788999999999999999999999999 9999999
Q ss_pred ceeEEeecCcCcc
Q 017119 94 KPIRVNKASQDKK 106 (377)
Q Consensus 94 ~~i~v~~~~~~~~ 106 (377)
+.|+|+++..+..
T Consensus 87 ~~l~v~~a~~~~~ 99 (107)
T 2cph_A 87 RRLVLEWADSEVT 99 (107)
T ss_dssp CBCEEEECCCCCC
T ss_pred CEEEEEeCCCCCC
Confidence 9999999987654
No 44
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8e-19 Score=134.63 Aligned_cols=91 Identities=26% Similarity=0.431 Sum_probs=84.3
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
....+....++|||+||+.++++++|+++|++||.|.+|+|+.+..++.++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 5 SSGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp CCSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 34456677899999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred eEEeecCcCcc
Q 017119 96 IRVNKASQDKK 106 (377)
Q Consensus 96 i~v~~~~~~~~ 106 (377)
|+|.++.....
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2dnm_A 85 LRVQVARYGRR 95 (103)
T ss_dssp CEEEECSSCCS
T ss_pred EEEEECCcCCC
Confidence 99999987653
No 45
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=131.73 Aligned_cols=86 Identities=24% Similarity=0.459 Sum_probs=80.8
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
+....++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++ +++..+.|+.|+|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 45578999999999999999999999999999999999999889999999999999999999999 99999999999999
Q ss_pred ecCcCcc
Q 017119 100 KASQDKK 106 (377)
Q Consensus 100 ~~~~~~~ 106 (377)
++..+..
T Consensus 85 ~a~~~~~ 91 (99)
T 2dgs_A 85 RAEPRDS 91 (99)
T ss_dssp ECCCCCC
T ss_pred ECCCCcc
Confidence 9987654
No 46
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=7.7e-19 Score=130.31 Aligned_cols=83 Identities=33% Similarity=0.487 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
...++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..++|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CcC
Q 017119 102 SQD 104 (377)
Q Consensus 102 ~~~ 104 (377)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 653
No 47
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.6e-19 Score=133.92 Aligned_cols=88 Identities=31% Similarity=0.505 Sum_probs=82.3
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
......++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eecCcCcc
Q 017119 99 NKASQDKK 106 (377)
Q Consensus 99 ~~~~~~~~ 106 (377)
+++.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x5s_A 87 DQAGKSSD 94 (102)
T ss_dssp EEEECCCC
T ss_pred EECCCCCC
Confidence 99877654
No 48
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.4e-19 Score=132.39 Aligned_cols=88 Identities=75% Similarity=1.231 Sum_probs=80.8
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecc-eeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNP-KIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~-~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
..++|||+||++++++++|+++|++||.| ..+ ++++|+.++.++|||||+|.+.++|++|++.|++..++|+.|+|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVI-LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCB-SSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45799999999999999999999999998 566 9999999999999999999999999999999999999999999999
Q ss_pred eeecCcCCcC
Q 017119 189 AYKKDTKGER 198 (377)
Q Consensus 189 a~~~~~~~~~ 198 (377)
+..+..+..+
T Consensus 83 a~~~~~~~~~ 92 (96)
T 1x5t_A 83 AFKKDSKGSG 92 (96)
T ss_dssp SCCCCCCCCC
T ss_pred ecccCCCCCC
Confidence 9887655443
No 49
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=131.19 Aligned_cols=86 Identities=28% Similarity=0.444 Sum_probs=80.3
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
........++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34455678999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEeecC
Q 017119 97 RVNKAS 102 (377)
Q Consensus 97 ~v~~~~ 102 (377)
+|++++
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999874
No 50
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=134.26 Aligned_cols=90 Identities=24% Similarity=0.333 Sum_probs=83.7
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhc------Ccc
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN------MIK 90 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~------~~~ 90 (377)
...+....++|||+||+.++++++|+++|++||.|.+|+|+.+..++.++|||||+|.+.++|++|++.|+ +..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 8 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 34556778999999999999999999999999999999999999899999999999999999999999999 999
Q ss_pred cCCceeEEeecCcCcc
Q 017119 91 LYGKPIRVNKASQDKK 106 (377)
Q Consensus 91 ~~g~~i~v~~~~~~~~ 106 (377)
+.|+.|+|.++..+..
T Consensus 88 ~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSSCEEEEECCCCCCC
T ss_pred EcCEEEEEEECCCCcc
Confidence 9999999999987653
No 51
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.3e-19 Score=133.99 Aligned_cols=89 Identities=34% Similarity=0.565 Sum_probs=82.8
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
......++|||+||+.++++++|+++|++||.|.+|+|+.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eecCcCccc
Q 017119 99 NKASQDKKS 107 (377)
Q Consensus 99 ~~~~~~~~~ 107 (377)
+++......
T Consensus 87 ~~a~~~~~~ 95 (102)
T 2cqb_A 87 NLAKPMRIK 95 (102)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876543
No 52
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=1.4e-18 Score=131.40 Aligned_cols=82 Identities=29% Similarity=0.472 Sum_probs=79.0
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCc
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ 103 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 103 (377)
+++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..++|+.|+|+++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 68999999999999999999999999999999999988899999999999999999999999999999999999999987
Q ss_pred Cc
Q 017119 104 DK 105 (377)
Q Consensus 104 ~~ 105 (377)
..
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 65
No 53
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=1.3e-18 Score=127.84 Aligned_cols=82 Identities=32% Similarity=0.477 Sum_probs=78.0
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCc
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ 103 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 103 (377)
+.+|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..++|+.|+|+++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988999999999999999999999999999999999999999876
Q ss_pred Cc
Q 017119 104 DK 105 (377)
Q Consensus 104 ~~ 105 (377)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 54
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=1.1e-18 Score=128.89 Aligned_cols=82 Identities=37% Similarity=0.629 Sum_probs=78.0
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
....++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred cC
Q 017119 101 AS 102 (377)
Q Consensus 101 ~~ 102 (377)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 55
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.2e-19 Score=134.57 Aligned_cols=89 Identities=29% Similarity=0.434 Sum_probs=81.7
Q ss_pred cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeE
Q 017119 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185 (377)
Q Consensus 106 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 185 (377)
......++|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.++|++|++.|++..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSI-SRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCE-EEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCe-EEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 345556899999999999999999999999998 5789999999999999999999999999999999999999999999
Q ss_pred EeeeeecCcC
Q 017119 186 VSYAYKKDTK 195 (377)
Q Consensus 186 v~~a~~~~~~ 195 (377)
|+|++.+...
T Consensus 89 v~~a~~~~~~ 98 (103)
T 2cq0_A 89 VEWAKPSTNS 98 (103)
T ss_dssp EEESSCCCCS
T ss_pred EEECCCCCCC
Confidence 9999876544
No 56
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=130.67 Aligned_cols=85 Identities=33% Similarity=0.555 Sum_probs=80.6
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
...++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35789999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CcCcc
Q 017119 102 SQDKK 106 (377)
Q Consensus 102 ~~~~~ 106 (377)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 57
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=3e-18 Score=131.91 Aligned_cols=89 Identities=28% Similarity=0.369 Sum_probs=81.5
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC---c
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG---K 94 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g---~ 94 (377)
.......++|||+||+.++++++|+++|++||.|.+|+|+.+. ++.++|||||+|.+.++|++|++.|++..+.+ +
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 9 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 3444678999999999999999999999999999999999988 78899999999999999999999999999998 9
Q ss_pred eeEEeecCcCccc
Q 017119 95 PIRVNKASQDKKS 107 (377)
Q Consensus 95 ~i~v~~~~~~~~~ 107 (377)
.|+|+++......
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 9999999876643
No 58
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=1e-18 Score=139.45 Aligned_cols=90 Identities=28% Similarity=0.376 Sum_probs=83.7
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
....+...+++|||+||+.++++++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|++|++.|++..|.|+.
T Consensus 38 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 38 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp CCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34556678899999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred eEEeecCcCc
Q 017119 96 IRVNKASQDK 105 (377)
Q Consensus 96 i~v~~~~~~~ 105 (377)
|+|+++..++
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 9999987654
No 59
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=133.80 Aligned_cols=90 Identities=26% Similarity=0.363 Sum_probs=82.6
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
........+++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 15 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 15 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 34444567789999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred eEEeecCcCc
Q 017119 96 IRVNKASQDK 105 (377)
Q Consensus 96 i~v~~~~~~~ 105 (377)
|+|.++..+.
T Consensus 95 l~V~~a~~~~ 104 (106)
T 1p27_B 95 ISVDWCFVRG 104 (106)
T ss_dssp CEEEESEESS
T ss_pred EEEEeecCCC
Confidence 9999987543
No 60
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=132.33 Aligned_cols=87 Identities=36% Similarity=0.527 Sum_probs=80.4
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..++|++++.++.++|||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDI-TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCC-CCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCE-EEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456799999999999999999999999998 678999999999999999999999999999999999999999999999
Q ss_pred eeeecCcC
Q 017119 188 YAYKKDTK 195 (377)
Q Consensus 188 ~a~~~~~~ 195 (377)
|++.+..+
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99876543
No 61
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=3.2e-19 Score=133.29 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=72.7
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcC--CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAG--PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
.+|||+||+.++++++|+++|++|| .|.+|+++.++.++.++|||||+|.+.++|++|++.|++..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred cCc
Q 017119 103 QDK 105 (377)
Q Consensus 103 ~~~ 105 (377)
...
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 62
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=9.1e-19 Score=137.80 Aligned_cols=87 Identities=25% Similarity=0.372 Sum_probs=80.5
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
....+....++|||+||+.++++++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|++|++.|++..++|+.
T Consensus 32 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 32 GKQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp SSSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34455667899999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred eEEeecC
Q 017119 96 IRVNKAS 102 (377)
Q Consensus 96 i~v~~~~ 102 (377)
|+|++++
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999863
No 63
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=131.87 Aligned_cols=89 Identities=29% Similarity=0.397 Sum_probs=82.3
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
....+....++|||+||+.++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 44555668999999999999999999999999999999999988 7889999999999999999999999999999999
Q ss_pred eEEeecCcCcc
Q 017119 96 IRVNKASQDKK 106 (377)
Q Consensus 96 i~v~~~~~~~~ 106 (377)
|+|.++..+..
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2d9p_A 85 LYVALAQRKEE 95 (103)
T ss_dssp CEEEECSSCCC
T ss_pred EEEEEeccccc
Confidence 99999987654
No 64
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=2.4e-18 Score=134.76 Aligned_cols=88 Identities=32% Similarity=0.636 Sum_probs=81.0
Q ss_pred cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeE
Q 017119 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185 (377)
Q Consensus 106 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 185 (377)
......++|||+||++++++++|+++|++||.| ..++|++++.++.++|||||+|.+.++|++|++.|++..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344556799999999999999999999999998 6789999988999999999999999999999999999999999999
Q ss_pred EeeeeecCc
Q 017119 186 VSYAYKKDT 194 (377)
Q Consensus 186 v~~a~~~~~ 194 (377)
|+|++.+..
T Consensus 89 V~~a~~~~~ 97 (115)
T 2dgo_A 89 TNWATRKPP 97 (115)
T ss_dssp EEESSCCCC
T ss_pred EEEccCCCC
Confidence 999987654
No 65
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=128.78 Aligned_cols=82 Identities=33% Similarity=0.683 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.++|++|++.|++..++|+.|+|+|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRI-SDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCE-eEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999998 67899999889999999999999999999999999999999999999999
Q ss_pred eec
Q 017119 190 YKK 192 (377)
Q Consensus 190 ~~~ 192 (377)
+.+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 66
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.77 E-value=4.2e-19 Score=132.67 Aligned_cols=81 Identities=22% Similarity=0.330 Sum_probs=71.8
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcC--CeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFG--VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G--~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
.+|||+||++++++++|+++|++|| .| .++++++|+.+|.++|||||+|.+.++|++|++.|++..++|+.|+|+++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v-~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDI-LEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCC-CCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCce-EEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999999999999999999999 76 68899999999999999999999999999999999999999999999999
Q ss_pred eecC
Q 017119 190 YKKD 193 (377)
Q Consensus 190 ~~~~ 193 (377)
....
T Consensus 81 ~~~~ 84 (90)
T 3p5t_L 81 NKLE 84 (90)
T ss_dssp ----
T ss_pred CCCc
Confidence 7654
No 67
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=1.7e-18 Score=127.23 Aligned_cols=81 Identities=36% Similarity=0.671 Sum_probs=76.7
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeee
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 191 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~ 191 (377)
.+|||+||++++++++|+++|++||.| ..+++.++..++.++|||||+|.+.++|++|++.|++..++|+.|+|+|++.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSY-LSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTE-EEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 589999999999999999999999998 5789999999999999999999999999999999999999999999999986
Q ss_pred cC
Q 017119 192 KD 193 (377)
Q Consensus 192 ~~ 193 (377)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 68
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=2.4e-18 Score=134.73 Aligned_cols=86 Identities=34% Similarity=0.523 Sum_probs=79.7
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..++|++++.++.++|||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNV-VSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCC-SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445789999999999999999999999998 678999999899999999999999999999999999999999999999
Q ss_pred eeeecCc
Q 017119 188 YAYKKDT 194 (377)
Q Consensus 188 ~a~~~~~ 194 (377)
|++.+..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9987654
No 69
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=2.2e-18 Score=132.88 Aligned_cols=89 Identities=26% Similarity=0.436 Sum_probs=82.4
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCccc---CCc
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL---YGK 94 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~---~g~ 94 (377)
.......++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..+ .++
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc
Confidence 34556789999999999999999999999999999999999998999999999999999999999999999887 899
Q ss_pred eeEEeecCcCcc
Q 017119 95 PIRVNKASQDKK 106 (377)
Q Consensus 95 ~i~v~~~~~~~~ 106 (377)
.|+|+++.....
T Consensus 87 ~l~v~~a~~~~~ 98 (106)
T 2dgp_A 87 PIQVKPADSESR 98 (106)
T ss_dssp CCEEEECCCCSC
T ss_pred eEEEEECCcccc
Confidence 999999987654
No 70
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.6e-18 Score=129.85 Aligned_cols=88 Identities=35% Similarity=0.504 Sum_probs=80.2
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
...+....++|||+||+.++++++|+++|++||.|.+|+|+.+.. .++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 345667889999999999999999999999999999999999863 368999999999999999999999999999999
Q ss_pred EEeecCcCcc
Q 017119 97 RVNKASQDKK 106 (377)
Q Consensus 97 ~v~~~~~~~~ 106 (377)
+|+++.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2cqi_A 86 KVNWATTPSS 95 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEECCCCcc
Confidence 9999987653
No 71
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=134.58 Aligned_cols=85 Identities=32% Similarity=0.566 Sum_probs=80.2
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
+.+..++|||+||+.++++++|+++|++||.|.+|+|+.+. ++.++|||||+|.+.++|++|++.|++..+.|+.|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecCcCc
Q 017119 100 KASQDK 105 (377)
Q Consensus 100 ~~~~~~ 105 (377)
++....
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 997665
No 72
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=131.41 Aligned_cols=86 Identities=35% Similarity=0.600 Sum_probs=79.8
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQI-SEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCC-CEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCe-EEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999998 678999999999999999999999999999999999999999999999
Q ss_pred eeeecCc
Q 017119 188 YAYKKDT 194 (377)
Q Consensus 188 ~a~~~~~ 194 (377)
|++.+..
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9987654
No 73
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=129.53 Aligned_cols=85 Identities=33% Similarity=0.608 Sum_probs=79.2
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||++++++++|+++|++||.| ..+++.++..++.++|||||+|.+.++|++|++.|++..++|+.|+|+|+
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKI-DNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCE-eEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35789999999999999999999999998 67899999999999999999999999999999999999999999999999
Q ss_pred eecCcC
Q 017119 190 YKKDTK 195 (377)
Q Consensus 190 ~~~~~~ 195 (377)
..+...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 74
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=132.80 Aligned_cols=89 Identities=28% Similarity=0.483 Sum_probs=82.4
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
........++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455678899999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEeecCcCc
Q 017119 97 RVNKASQDK 105 (377)
Q Consensus 97 ~v~~~~~~~ 105 (377)
+|+++..+.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999987653
No 75
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=131.73 Aligned_cols=86 Identities=27% Similarity=0.475 Sum_probs=80.8
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeE-EEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce---
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVV-NVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP--- 95 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~-~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~--- 95 (377)
.....++|||+||+.++++++|+++|++||.|. +|+++.++.++.++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 445789999999999999999999999999999 9999999989999999999999999999999999999999999
Q ss_pred -eEEeecCcCc
Q 017119 96 -IRVNKASQDK 105 (377)
Q Consensus 96 -i~v~~~~~~~ 105 (377)
|+|+++....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987654
No 76
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=130.57 Aligned_cols=85 Identities=26% Similarity=0.331 Sum_probs=79.3
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.++|++|++.|++..++|+.|+|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPL-SELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCE-EEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345789999999999999999999999998 6789999988999999999999999999999999999999999999999
Q ss_pred eeecCc
Q 017119 189 AYKKDT 194 (377)
Q Consensus 189 a~~~~~ 194 (377)
++.+..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987754
No 77
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=131.58 Aligned_cols=90 Identities=30% Similarity=0.421 Sum_probs=81.9
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCC-CCccceEEEEeCCHHHHHHHHHHhcCcccCCc
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVT-NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK 94 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~-~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~ 94 (377)
.........++|||+||+.++++++|+++|++|| |.+|+|+.+..+ +.++|||||+|.+.++|++|+ .|++..+.|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp CCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 3444556779999999999999999999999999 999999999887 899999999999999999999 8999999999
Q ss_pred eeEEeecCcCccc
Q 017119 95 PIRVNKASQDKKS 107 (377)
Q Consensus 95 ~i~v~~~~~~~~~ 107 (377)
.|+|+++..+...
T Consensus 85 ~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 85 RIRVDVADQAQDK 97 (104)
T ss_dssp ECEEEECCCCCCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999876543
No 78
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=2.6e-18 Score=133.41 Aligned_cols=89 Identities=22% Similarity=0.343 Sum_probs=82.3
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
........++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..++|+.|
T Consensus 19 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 98 (110)
T 1oo0_B 19 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 98 (110)
T ss_dssp CBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34455677899999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEeecCcCc
Q 017119 97 RVNKASQDK 105 (377)
Q Consensus 97 ~v~~~~~~~ 105 (377)
+|.++..+.
T Consensus 99 ~V~~a~~~~ 107 (110)
T 1oo0_B 99 QVDWCFVKG 107 (110)
T ss_dssp EEEESEESS
T ss_pred EEEEcccCC
Confidence 999987654
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=130.86 Aligned_cols=85 Identities=21% Similarity=0.267 Sum_probs=74.8
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhc--CcccCCce
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN--MIKLYGKP 95 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~--~~~~~g~~ 95 (377)
.......++|||+||++++||++|+++|++||.|.+|+|+.+ ||||||+|.+.++|++|++.|+ +..+.|+.
T Consensus 10 ~~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~ 83 (105)
T 1sjq_A 10 HGSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 83 (105)
T ss_dssp --CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 345567899999999999999999999999999999999874 6899999999999999999886 47899999
Q ss_pred eEEeecCcCcccc
Q 017119 96 IRVNKASQDKKSL 108 (377)
Q Consensus 96 i~v~~~~~~~~~~ 108 (377)
|+|+++..+....
T Consensus 84 l~V~~A~~~~~~~ 96 (105)
T 1sjq_A 84 IYIQFSNHKELKT 96 (105)
T ss_dssp CCBCCCSSSSCCC
T ss_pred EEEEEcCCCCCCc
Confidence 9999998765443
No 80
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=132.87 Aligned_cols=91 Identities=29% Similarity=0.472 Sum_probs=81.1
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcC
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD 104 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 104 (377)
++|||+||+.++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|++..+.|+.|+|+++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 48999999999999999999999999999999876 7899999999999999999999999999999999999765
Q ss_pred cccc---------CCCCeEEEcCCC
Q 017119 105 KKSL---------DVGANLFIGNLD 120 (377)
Q Consensus 105 ~~~~---------~~~~~l~V~nl~ 120 (377)
.... ....+||||||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 4221 224579999986
No 81
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=132.26 Aligned_cols=87 Identities=26% Similarity=0.381 Sum_probs=80.1
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+||++++++++|+++|++||.| ..++|.+++.++.++|||||+|.+.++|++|++.|++..++|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRV-GDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCE-EEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34456799999999999999999999999998 67899999999999999999999999999999999999999999999
Q ss_pred eeeeecCc
Q 017119 187 SYAYKKDT 194 (377)
Q Consensus 187 ~~a~~~~~ 194 (377)
+|++.+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99987644
No 82
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=130.08 Aligned_cols=85 Identities=27% Similarity=0.549 Sum_probs=78.7
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|++||.| ..+++++++.++.++|||||+|.+.++|++|++ |++..++|+.|+|+|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVV-TEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCE-EEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 445799999999999999999999999998 678999999999999999999999999999998 999999999999999
Q ss_pred eeecCcC
Q 017119 189 AYKKDTK 195 (377)
Q Consensus 189 a~~~~~~ 195 (377)
+..+...
T Consensus 86 a~~~~~~ 92 (99)
T 2dgs_A 86 AEPRDSK 92 (99)
T ss_dssp CCCCCCC
T ss_pred CCCCccc
Confidence 9876543
No 83
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2.7e-18 Score=129.87 Aligned_cols=83 Identities=31% Similarity=0.582 Sum_probs=78.2
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
+++|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.++|++|++.|++..++|+.|+|+|++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPV-INLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCE-EEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCE-EEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 4689999999999999999999999998 678999999999999999999999999999999999999999999999998
Q ss_pred ecCc
Q 017119 191 KKDT 194 (377)
Q Consensus 191 ~~~~ 194 (377)
.+..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7654
No 84
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=131.93 Aligned_cols=87 Identities=31% Similarity=0.512 Sum_probs=80.3
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPV-VNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCE-EEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 44556799999999999999999999999998 57899999889999999999999999999999999999999999999
Q ss_pred eeeeecCc
Q 017119 187 SYAYKKDT 194 (377)
Q Consensus 187 ~~a~~~~~ 194 (377)
+|++.+..
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99977654
No 85
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=129.60 Aligned_cols=85 Identities=27% Similarity=0.348 Sum_probs=79.5
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEE--------EEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCc
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVN--------VYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMI 89 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~ 89 (377)
.......++|||+||+.++++++|+++|++||.|.+ |+++.++.++.++|||||+|.+.++|++|++.|++.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344567899999999999999999999999999999 999999889999999999999999999999999999
Q ss_pred ccCCceeEEeecC
Q 017119 90 KLYGKPIRVNKAS 102 (377)
Q Consensus 90 ~~~g~~i~v~~~~ 102 (377)
.+.|+.|+|++++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999873
No 86
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.2e-18 Score=132.91 Aligned_cols=89 Identities=26% Similarity=0.351 Sum_probs=80.9
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeee-------cceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCcee
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVT-------NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL 179 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~-------~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~ 179 (377)
.....++|||+||++++++++|+++|++||.|.. .++|+.++.++.++|||||+|.+.++|++|++.|++..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 3445679999999999999999999999999843 589999999999999999999999999999999999999
Q ss_pred cCeeeEEeeeeecCcC
Q 017119 180 CNRQITVSYAYKKDTK 195 (377)
Q Consensus 180 ~g~~l~v~~a~~~~~~ 195 (377)
+|+.|+|+|++.+...
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999876543
No 87
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=9e-19 Score=133.50 Aligned_cols=85 Identities=28% Similarity=0.286 Sum_probs=79.7
Q ss_pred cCCCCeEEEcCCCc------CCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC-
Q 017119 21 RNQDATAYVGNLDP------QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG- 93 (377)
Q Consensus 21 ~~~~~~l~v~nLp~------~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g- 93 (377)
+..+++|||+||+. ++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++|++.|++..+.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEeecCcCc
Q 017119 94 KPIRVNKASQDK 105 (377)
Q Consensus 94 ~~i~v~~~~~~~ 105 (377)
+.|+|+++...+
T Consensus 83 r~l~V~~a~~~~ 94 (100)
T 3ns6_A 83 HRLFLYTMKDVE 94 (100)
T ss_dssp CBCEEEESHHHH
T ss_pred eEEEEEECchhh
Confidence 999999986543
No 88
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=130.23 Aligned_cols=85 Identities=31% Similarity=0.552 Sum_probs=80.3
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEE-EEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v-~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
...++|||+||+.++++++|+++|++||.|.+| +++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred cCcCcc
Q 017119 101 ASQDKK 106 (377)
Q Consensus 101 ~~~~~~ 106 (377)
+.....
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 977653
No 89
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=129.92 Aligned_cols=86 Identities=47% Similarity=0.809 Sum_probs=78.1
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
........++|||+||+.++++++|+++|++||.|.+|++..+.. +.++|||||+|.+.++|++|++.|++..++|+.|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 344556779999999999999999999999999999999999885 8899999999999999999999999999999999
Q ss_pred EEeecCc
Q 017119 97 RVNKASQ 103 (377)
Q Consensus 97 ~v~~~~~ 103 (377)
+|++++.
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9998763
No 90
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.5e-18 Score=131.31 Aligned_cols=88 Identities=20% Similarity=0.449 Sum_probs=80.2
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecC-CCCCCCcceEEEEeCCHHHHHHHHHHH-cCceecCeee
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD-PDTGNSRGFGFISYDSFEASDAAIEAM-NGQYLCNRQI 184 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d-~~~~~~kg~afV~f~~~~~A~~a~~~l-~~~~~~g~~l 184 (377)
.....++|||+||++++++++|+++|++||.| ..++++++ +.++.++|||||+|.+.++|++|++.| ++..|+|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGEL-KTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCE-EEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCe-EEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34456799999999999999999999999998 57888888 789999999999999999999999999 9999999999
Q ss_pred EEeeeeecCcC
Q 017119 185 TVSYAYKKDTK 195 (377)
Q Consensus 185 ~v~~a~~~~~~ 195 (377)
+|+|++.+...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999876543
No 91
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=4.2e-18 Score=138.03 Aligned_cols=89 Identities=31% Similarity=0.440 Sum_probs=83.0
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
..+....++|||+||+.++++++|+++|++||.|++|+|+.++.++.++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34556778999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EeecCcCcc
Q 017119 98 VNKASQDKK 106 (377)
Q Consensus 98 v~~~~~~~~ 106 (377)
|.++.....
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999987654
No 92
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=131.50 Aligned_cols=88 Identities=30% Similarity=0.484 Sum_probs=81.6
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHh-cCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc-cCCce
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQ-AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK-LYGKP 95 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~-~~g~~ 95 (377)
..+....++|||+||+.++++++|+++|++ ||.|.+|+|+.+. ++.++|||||+|.+.++|++|++.|++.. +.|+.
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 3 SGSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp CCCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 345667899999999999999999999999 9999999999998 89999999999999999999999999999 99999
Q ss_pred eEEeecCcCcc
Q 017119 96 IRVNKASQDKK 106 (377)
Q Consensus 96 i~v~~~~~~~~ 106 (377)
|+|+++.....
T Consensus 82 l~v~~a~~~~~ 92 (104)
T 2dhg_A 82 VRLSVAIPKAS 92 (104)
T ss_dssp CCCCBCCCCCS
T ss_pred EEEEEccCCCc
Confidence 99999876553
No 93
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.2e-18 Score=131.89 Aligned_cols=87 Identities=30% Similarity=0.489 Sum_probs=80.3
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHc------CceecC
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN------GQYLCN 181 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~------~~~~~g 181 (377)
....++|||+||++++++++|+++|++||.| ..++|++|+.++.++|||||+|.+.++|++|++.|+ +..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDL-KYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCE-EEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 3456789999999999999999999999998 678999999999999999999999999999999999 999999
Q ss_pred eeeEEeeeeecCcC
Q 017119 182 RQITVSYAYKKDTK 195 (377)
Q Consensus 182 ~~l~v~~a~~~~~~ 195 (377)
+.|+|+|+..+...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876543
No 94
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-17 Score=128.27 Aligned_cols=90 Identities=26% Similarity=0.347 Sum_probs=81.5
Q ss_pred CCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCc
Q 017119 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK 94 (377)
Q Consensus 15 ~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~ 94 (377)
+.........++|||+||+.++++++|+++|++||.|.+|+|+.+.. .++|||||+|.+.++|++|++.|++..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cq3_A 6 SGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGR 83 (103)
T ss_dssp CCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34455667889999999999999999999999999999999998863 3899999999999999999999999999999
Q ss_pred eeEEeecCcCcc
Q 017119 95 PIRVNKASQDKK 106 (377)
Q Consensus 95 ~i~v~~~~~~~~ 106 (377)
.|+|.++.....
T Consensus 84 ~l~v~~a~~~~~ 95 (103)
T 2cq3_A 84 KIEVNNATARVM 95 (103)
T ss_dssp ECEEEECCSSCC
T ss_pred EEEEEEcccCCC
Confidence 999999987653
No 95
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=3.8e-18 Score=126.56 Aligned_cols=83 Identities=24% Similarity=0.414 Sum_probs=76.2
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
+.+....++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++ +++..++|+.|+
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~ 83 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVID 83 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEE
Confidence 3456788999999999999999999999999999999999999899999999999999999999997 678889999999
Q ss_pred Eeec
Q 017119 98 VNKA 101 (377)
Q Consensus 98 v~~~ 101 (377)
|+++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 96
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=138.91 Aligned_cols=89 Identities=25% Similarity=0.429 Sum_probs=81.8
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEE--EEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCc----c
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVN--VYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMI----K 90 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~--v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~----~ 90 (377)
........++|||+||++++|+++|+++|++||.|.. |+|++|+.++.++|||||+|.+. +|++|++.|++. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3445567889999999999999999999999999977 99999999999999999999999 999999999999 9
Q ss_pred cCCceeEEeecCcCcc
Q 017119 91 LYGKPIRVNKASQDKK 106 (377)
Q Consensus 91 ~~g~~i~v~~~~~~~~ 106 (377)
++|+.|+|+++...+.
T Consensus 95 ~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKR 110 (131)
T ss_dssp GGGCCCCCEECCCSCC
T ss_pred CCCEEEEEEECCCCCC
Confidence 9999999999977653
No 97
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=133.67 Aligned_cols=89 Identities=22% Similarity=0.307 Sum_probs=82.8
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeE--------EEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCc
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVV--------NVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMI 89 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~--------~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~ 89 (377)
..+....++|||+||+.++++++|+++|++||.|. .|+|+.++.++.++|||||+|.+.++|++|++.|++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34567889999999999999999999999999999 6999999889999999999999999999999999999
Q ss_pred ccCCceeEEeecCcCcc
Q 017119 90 KLYGKPIRVNKASQDKK 106 (377)
Q Consensus 90 ~~~g~~i~v~~~~~~~~ 106 (377)
.+.|+.|+|.++.....
T Consensus 89 ~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPP 105 (113)
T ss_dssp EETTEECEEECSSCCCC
T ss_pred ccCCCEEEEEECCCCCC
Confidence 99999999999987654
No 98
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=4.1e-18 Score=130.62 Aligned_cols=89 Identities=24% Similarity=0.330 Sum_probs=81.6
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
.........++|||+||+.++++++|+++|++|| |.+|+++.+..++.++|||||+|.+.++|++|+ .|++..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 84 (103)
T 2dng_A 7 GKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRS 84 (103)
T ss_dssp CCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence 3445556789999999999999999999999997 999999999989999999999999999999999 79999999999
Q ss_pred eEEeecCcCcc
Q 017119 96 IRVNKASQDKK 106 (377)
Q Consensus 96 i~v~~~~~~~~ 106 (377)
|+|.++.....
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2dng_A 85 LRVDIAEGRKQ 95 (103)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEEecCCCC
Confidence 99999987654
No 99
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.76 E-value=2.8e-18 Score=126.62 Aligned_cols=81 Identities=37% Similarity=0.569 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|++||.| ..+++.++..++.++|||||+|.+.++|++|++.|++..++|+.|+|+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDI-TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCE-EEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCE-EEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345799999999999999999999999998 6788999989999999999999999999999999999999999999999
Q ss_pred ee
Q 017119 189 AY 190 (377)
Q Consensus 189 a~ 190 (377)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 100
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=131.63 Aligned_cols=90 Identities=27% Similarity=0.409 Sum_probs=82.8
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
....+....++|||+||+.++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++|++. ++..+.|+.
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (105)
T 2dh8_A 8 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN 86 (105)
T ss_dssp CCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE
T ss_pred CCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 3344567889999999999999999999999999999999999988999999999999999999999998 999999999
Q ss_pred eEEeecCcCcc
Q 017119 96 IRVNKASQDKK 106 (377)
Q Consensus 96 i~v~~~~~~~~ 106 (377)
|+|.++..+..
T Consensus 87 l~V~~a~~~~~ 97 (105)
T 2dh8_A 87 IDPKPCTPRGM 97 (105)
T ss_dssp EBCCCSCCSSC
T ss_pred EEEEEccCCCC
Confidence 99999876653
No 101
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=130.09 Aligned_cols=85 Identities=27% Similarity=0.443 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCC---CCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRV---TNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~---~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
...++|||+||+.++++++|+++|++||.|.+|+++.+.. ++.++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998876 5588999999999999999999999999999999999
Q ss_pred eecCcCcc
Q 017119 99 NKASQDKK 106 (377)
Q Consensus 99 ~~~~~~~~ 106 (377)
+++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987654
No 102
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=2.4e-18 Score=124.74 Aligned_cols=74 Identities=26% Similarity=0.299 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
.+.-|||+||+.++||++|+++|.+||.|.++++.. +||||||+|.+.++|++|++.||+..+.|+.|+|++++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999954 68999999999999999999999999999999998873
No 103
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=140.99 Aligned_cols=83 Identities=25% Similarity=0.377 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcC--CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAG--PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
...++|||+||++++++++|+++|++|| .|.+|+|+.|+.++.++|||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4678999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCcC
Q 017119 100 KASQD 104 (377)
Q Consensus 100 ~~~~~ 104 (377)
++...
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98654
No 104
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.4e-18 Score=127.77 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=74.5
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHh--cCcccCCce
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL--NMIKLYGKP 95 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l--~~~~~~g~~ 95 (377)
......+++|||+||++++++++|+++|++||.|.+|+++.+ ||||||+|.+.++|++|++.| ++..+.|+.
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 445567889999999999999999999999999999998764 789999999999999999976 467899999
Q ss_pred eEEeecCcCccc
Q 017119 96 IRVNKASQDKKS 107 (377)
Q Consensus 96 i~v~~~~~~~~~ 107 (377)
|+|+++..+...
T Consensus 83 l~V~~a~~~~~~ 94 (101)
T 2cq1_A 83 IYIQYSNHKELK 94 (101)
T ss_dssp CEEEECSCSSCC
T ss_pred EEEEEcCcccCc
Confidence 999999876543
No 105
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.2e-18 Score=128.50 Aligned_cols=84 Identities=30% Similarity=0.401 Sum_probs=78.0
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+||++++++++|+++|++||.| ..+++.++..++.++|||||+|.+.++|++|++.|++..++|+.|+|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPI-ADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCE-EEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCe-eEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456789999999999999999999999998 67899999999999999999999999999999999999999999999
Q ss_pred eeeee
Q 017119 187 SYAYK 191 (377)
Q Consensus 187 ~~a~~ 191 (377)
+|++.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99864
No 106
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.75 E-value=2.8e-18 Score=134.28 Aligned_cols=81 Identities=43% Similarity=0.734 Sum_probs=73.6
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
..+|||+||++++++++|+++|++||.| .+++|++|. +.+||||||+|.+.++|++|++.|++..|+|+.|+|+|+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v-~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNI-LSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCE-EEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3589999999999999999999999998 578888875 4589999999999999999999999999999999999997
Q ss_pred ecCc
Q 017119 191 KKDT 194 (377)
Q Consensus 191 ~~~~ 194 (377)
.+..
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 6543
No 107
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.9e-18 Score=130.89 Aligned_cols=85 Identities=27% Similarity=0.538 Sum_probs=79.1
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.++|++|++.|++..++|+.|+|+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEI-KNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCE-EEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCe-EEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3445789999999999999999999999998 678999999999999999999999999999999999999999999999
Q ss_pred eeeecC
Q 017119 188 YAYKKD 193 (377)
Q Consensus 188 ~a~~~~ 193 (377)
|+..+.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 998754
No 108
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=5.7e-18 Score=130.31 Aligned_cols=86 Identities=29% Similarity=0.554 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC---eeeE
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN---RQIT 185 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g---~~l~ 185 (377)
...++|||+||++++++++|+++|++||.| ..++|.++. ++.++|||||+|.+.++|++|++.|++..+.| +.|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVI-DECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 446799999999999999999999999998 678898886 79999999999999999999999999999998 9999
Q ss_pred EeeeeecCcCC
Q 017119 186 VSYAYKKDTKG 196 (377)
Q Consensus 186 v~~a~~~~~~~ 196 (377)
|+|+..+..+.
T Consensus 91 V~~a~~~~~~~ 101 (105)
T 2dnh_A 91 VKFADTDKESG 101 (105)
T ss_dssp EEESCSSCCCS
T ss_pred EEECccCcccC
Confidence 99998776543
No 109
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.7e-18 Score=129.07 Aligned_cols=84 Identities=18% Similarity=0.354 Sum_probs=77.7
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|++||.| ..+++..++ ++.++|||||+|.+.++|++|++.|++..++|+.|+|+|
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTV-KDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCe-EEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445789999999999999999999999998 678999887 899999999999999999999999999999999999999
Q ss_pred eeecCc
Q 017119 189 AYKKDT 194 (377)
Q Consensus 189 a~~~~~ 194 (377)
++.+..
T Consensus 93 a~~~~~ 98 (100)
T 2do4_A 93 SNSGPS 98 (100)
T ss_dssp CCCCSC
T ss_pred CCCCCC
Confidence 987653
No 110
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=130.70 Aligned_cols=88 Identities=28% Similarity=0.368 Sum_probs=80.8
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
........++|||+||+.++++++|+++|++||.|.+|+|+.++ ++.++|||||+|.+.++|++|++.|++..++|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 8 ALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 34455678999999999999999999999999999999999987 58899999999999999999999999999999999
Q ss_pred EEeecCcCc
Q 017119 97 RVNKASQDK 105 (377)
Q Consensus 97 ~v~~~~~~~ 105 (377)
+|+++....
T Consensus 87 ~v~~a~~~~ 95 (114)
T 2do0_A 87 HVKMDERAL 95 (114)
T ss_dssp EEEECSCCC
T ss_pred EEEEcccCC
Confidence 999987544
No 111
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.7e-18 Score=127.50 Aligned_cols=81 Identities=28% Similarity=0.473 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.++|++|++.|++..++|+.|+|+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKV-VKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCE-EEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCe-EEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 445789999999999999999999999998 6789999999999999999999999999999999999999999999999
Q ss_pred ee
Q 017119 189 AY 190 (377)
Q Consensus 189 a~ 190 (377)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 112
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=5.4e-18 Score=132.78 Aligned_cols=84 Identities=35% Similarity=0.574 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|++||.| ..+++..+. ++.++|||||+|.+.++|++|++.|++..++|+.|+|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPI-SEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCC-SEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 445799999999999999999999999998 678999987 899999999999999999999999999999999999999
Q ss_pred eeecCc
Q 017119 189 AYKKDT 194 (377)
Q Consensus 189 a~~~~~ 194 (377)
++.+..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987654
No 113
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=127.43 Aligned_cols=88 Identities=24% Similarity=0.239 Sum_probs=80.5
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
........++|||+||+.++++++|+++|++||.|.+|+|+.+..++.++|||||+|.+.++|++|++ ++..++|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l 85 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWC 85 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEE
Confidence 34456678899999999999999999999999999999999999889999999999999999999999 5778999999
Q ss_pred EEeecCcCcc
Q 017119 97 RVNKASQDKK 106 (377)
Q Consensus 97 ~v~~~~~~~~ 106 (377)
+|.++..+..
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cqg_A 86 DCKLPNSKQS 95 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEEecCCCCc
Confidence 9999987654
No 114
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=4.1e-18 Score=131.94 Aligned_cols=91 Identities=27% Similarity=0.345 Sum_probs=75.8
Q ss_pred CCCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 14 ~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
.....++....++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.+ +..++|
T Consensus 15 ~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g 93 (109)
T 2rs2_A 15 VPRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS 93 (109)
T ss_dssp -----------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT
T ss_pred CccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC
Confidence 3344556678899999999999999999999999999999999999989999999999999999999999965 589999
Q ss_pred ceeEEeecCcCc
Q 017119 94 KPIRVNKASQDK 105 (377)
Q Consensus 94 ~~i~v~~~~~~~ 105 (377)
+.|+|+++..+.
T Consensus 94 ~~l~V~~a~~~~ 105 (109)
T 2rs2_A 94 KTIDPKVAFPRR 105 (109)
T ss_dssp EEEEEEECCCCC
T ss_pred EEEEEEEccCCC
Confidence 999999987654
No 115
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=6.1e-19 Score=169.09 Aligned_cols=85 Identities=22% Similarity=0.430 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|++||.| ..|.|+.+..++.++|||||+|.+.++|.+||+.||+..|+|+.|.|+|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPI-KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCe-eEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345799999999999999999999999998 5789999989999999999999999999999999999999999999999
Q ss_pred eeecCc
Q 017119 189 AYKKDT 194 (377)
Q Consensus 189 a~~~~~ 194 (377)
+..+..
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 986543
No 116
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.75 E-value=7.4e-18 Score=130.82 Aligned_cols=86 Identities=27% Similarity=0.480 Sum_probs=79.6
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..+++..++.++.++|||||+|.+.++|++|++.|++..++|+.|+|+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEI-KNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCE-EEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3445789999999999999999999999998 678999999999999999999999999999999999999999999999
Q ss_pred eeeecCc
Q 017119 188 YAYKKDT 194 (377)
Q Consensus 188 ~a~~~~~ 194 (377)
|+..+..
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987653
No 117
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=6.1e-18 Score=130.35 Aligned_cols=86 Identities=31% Similarity=0.409 Sum_probs=79.1
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCcee---cCeee
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL---CNRQI 184 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~---~g~~l 184 (377)
....++|||+||++++++++|+++|++||.| ..+++++|+.++.++|||||+|.+.++|++|++.|++..+ .|+.|
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKI-YELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCC-CEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 3456789999999999999999999999998 6789999999999999999999999999999999999988 89999
Q ss_pred EEeeeeecCc
Q 017119 185 TVSYAYKKDT 194 (377)
Q Consensus 185 ~v~~a~~~~~ 194 (377)
+|+|+..+..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999987654
No 118
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.6e-18 Score=129.85 Aligned_cols=86 Identities=35% Similarity=0.646 Sum_probs=78.2
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+||++++++++|+++|++||.| ..+++.++ ++.++|||||+|.+.++|++|++.|++..++|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTI-TSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCE-EEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34456799999999999999999999999998 56788887 8899999999999999999999999999999999999
Q ss_pred eeeeecCcC
Q 017119 187 SYAYKKDTK 195 (377)
Q Consensus 187 ~~a~~~~~~ 195 (377)
+|++.+...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2d9p_A 88 ALAQRKEER 96 (103)
T ss_dssp EECSSCCCC
T ss_pred EEecccccC
Confidence 999876543
No 119
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=130.27 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=76.5
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
+....++|||+||+.++|+++|+++|++||.|.+|+|+.+.. +.++|||||+|.+.++|++|++ +++..+.|+.|+|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999999987 9999999999999999999999 99999999999999
Q ss_pred ecCc
Q 017119 100 KASQ 103 (377)
Q Consensus 100 ~~~~ 103 (377)
+...
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8654
No 120
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=4.3e-18 Score=129.50 Aligned_cols=81 Identities=26% Similarity=0.447 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeec--------ceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceec
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN--------PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~--------~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~ 180 (377)
...++|||+||++++++++|+++|++||.| .. +++.+|+.++.++|||||+|.+.++|++|++.|++..++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGII-KTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCB-CEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCE-eeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345789999999999999999999999998 45 899999999999999999999999999999999999999
Q ss_pred CeeeEEeeee
Q 017119 181 NRQITVSYAY 190 (377)
Q Consensus 181 g~~l~v~~a~ 190 (377)
|+.|+|+||+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999984
No 121
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.8e-18 Score=126.73 Aligned_cols=82 Identities=26% Similarity=0.238 Sum_probs=75.9
Q ss_pred cCCCCeEEEcCCCcCCCHHHHH----HHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 21 RNQDATAYVGNLDPQVTEELLW----ELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~----~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
..+.++|||+||+.++++++|+ ++|++||.|.+|+++.++.+ ++||||+|.+.++|++|++.|++..+.|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4466899999999999999999 99999999999999988754 8899999999999999999999999999999
Q ss_pred EEeecCcCc
Q 017119 97 RVNKASQDK 105 (377)
Q Consensus 97 ~v~~~~~~~ 105 (377)
+|+++....
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997654
No 122
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=137.12 Aligned_cols=84 Identities=18% Similarity=0.441 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeee-cceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc----eecCee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVT-NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ----YLCNRQ 183 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~-~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~----~~~g~~ 183 (377)
...++|||+||++++++++|+++|++||.|.. +++|++|+.++++||||||+|.+. +|.+|++.|++. .++|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 44678999999999999999999999999832 289999999999999999999999 999999999999 999999
Q ss_pred eEEeeeeecC
Q 017119 184 ITVSYAYKKD 193 (377)
Q Consensus 184 l~v~~a~~~~ 193 (377)
|+|+|++.+.
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 123
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-17 Score=128.33 Aligned_cols=88 Identities=23% Similarity=0.364 Sum_probs=78.9
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
....+....++|||+||+.++++++|+++|++||.|.+|+|..+ +.+++||||+|.+.++|++|++.|++..+.|+.
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 14 IRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp SSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 34445567899999999999999999999999999999999664 457899999999999999999999999999999
Q ss_pred eEEeecCcCcc
Q 017119 96 IRVNKASQDKK 106 (377)
Q Consensus 96 i~v~~~~~~~~ 106 (377)
|+|+++.....
T Consensus 91 l~V~~a~~~~~ 101 (109)
T 1x4a_A 91 LRVEFPRSGRG 101 (109)
T ss_dssp CEEECCCCCCC
T ss_pred EEEEEcccCCC
Confidence 99999987654
No 124
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-18 Score=132.68 Aligned_cols=85 Identities=35% Similarity=0.580 Sum_probs=80.3
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
+...++|||+||+.++++++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|++|++.|++..+.|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 84 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDN 84 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEe
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCcCc
Q 017119 101 ASQDK 105 (377)
Q Consensus 101 ~~~~~ 105 (377)
+....
T Consensus 85 a~~~~ 89 (104)
T 1p1t_A 85 AASEK 89 (104)
T ss_dssp TTCTT
T ss_pred CCCcc
Confidence 87665
No 125
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.2e-18 Score=129.04 Aligned_cols=85 Identities=26% Similarity=0.552 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCee----e
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ----I 184 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~----l 184 (377)
...++|||+||++++++++|+++|++||.|+..+++++|+.++.++|||||+|.+.++|++|++.|++..++|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 456799999999999999999999999998437899999999999999999999999999999999999999999 9
Q ss_pred EEeeeeecC
Q 017119 185 TVSYAYKKD 193 (377)
Q Consensus 185 ~v~~a~~~~ 193 (377)
+|+|++...
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999997653
No 126
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=3.7e-18 Score=140.71 Aligned_cols=84 Identities=17% Similarity=0.304 Sum_probs=77.5
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcC--CeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFG--VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G--~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
..++|||+||++++++++|+++|+.|| .| .+++|++|+.+|.++|||||+|.+.++|++||+.|++..|+|+.|+|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v-~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDV-VELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCE-EEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccE-EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 346899999999999999999999999 76 678999999999999999999999999999999999999999999999
Q ss_pred eeeecCc
Q 017119 188 YAYKKDT 194 (377)
Q Consensus 188 ~a~~~~~ 194 (377)
|+..+..
T Consensus 133 ~a~~~~~ 139 (156)
T 3n9u_C 133 PATRQNL 139 (156)
T ss_dssp ECCHHHH
T ss_pred EcCCCcc
Confidence 9976543
No 127
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=7.1e-18 Score=134.28 Aligned_cols=89 Identities=26% Similarity=0.368 Sum_probs=82.4
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
........++|||+||+.++++++|+++|++||.|.+|+|+.+..++.++|||||+|.+.++|++|++.|++..|.|+.|
T Consensus 15 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 15 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 34455667899999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEeecCcCc
Q 017119 97 RVNKASQDK 105 (377)
Q Consensus 97 ~v~~~~~~~ 105 (377)
+|+++....
T Consensus 95 ~v~~a~~~~ 103 (126)
T 3ex7_B 95 SVDWCFVRG 103 (126)
T ss_dssp EEEESEESS
T ss_pred EEEEecCCC
Confidence 999987654
No 128
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.7e-18 Score=131.66 Aligned_cols=89 Identities=26% Similarity=0.367 Sum_probs=79.7
Q ss_pred CCCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 14 ~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
.+....+....++|||+||+.++++++|+++|++||.|.+|+++.+. +.++|||||+|.+.++|++|++.|++..++|
T Consensus 19 ~S~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 96 (109)
T 2err_A 19 SHMNTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEG 96 (109)
T ss_dssp ---CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred CCCCccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34556667788999999999999999999999999999999999886 4489999999999999999999999999999
Q ss_pred ceeEEeecCcC
Q 017119 94 KPIRVNKASQD 104 (377)
Q Consensus 94 ~~i~v~~~~~~ 104 (377)
+.|+|+++..+
T Consensus 97 ~~l~V~~a~~~ 107 (109)
T 2err_A 97 RKIEVNNATAR 107 (109)
T ss_dssp EECEEEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999998754
No 129
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.1e-18 Score=130.06 Aligned_cols=85 Identities=16% Similarity=0.162 Sum_probs=79.2
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
.....++|||+||+.++++++|+++|++||.|.+++++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999988888888889999999999999999999999999999999999999
Q ss_pred ecCcC
Q 017119 100 KASQD 104 (377)
Q Consensus 100 ~~~~~ 104 (377)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 130
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=3.7e-18 Score=134.28 Aligned_cols=82 Identities=33% Similarity=0.516 Sum_probs=76.3
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..+++++++.++.++|||||+|.+.++|++|++.|++..++|+.|+|+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNV-ISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEE-EEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3446789999999999999999999999998 578999999999999999999999999999999999999999999999
Q ss_pred eee
Q 017119 188 YAY 190 (377)
Q Consensus 188 ~a~ 190 (377)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 974
No 131
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.5e-18 Score=133.39 Aligned_cols=91 Identities=24% Similarity=0.406 Sum_probs=82.4
Q ss_pred CCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCc
Q 017119 15 GQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK 94 (377)
Q Consensus 15 ~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~ 94 (377)
.....+....++|||+||+.++++++|+++|++||.|.+|+|+.+..++.++|||||+|.+.++|++|++. ++..++|+
T Consensus 18 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~ 96 (116)
T 1x4b_A 18 ERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGR 96 (116)
T ss_dssp CCCCCHHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTE
T ss_pred hhcccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCE
Confidence 33444455678999999999999999999999999999999999998999999999999999999999996 99999999
Q ss_pred eeEEeecCcCcc
Q 017119 95 PIRVNKASQDKK 106 (377)
Q Consensus 95 ~i~v~~~~~~~~ 106 (377)
.|+|+++..+..
T Consensus 97 ~l~V~~a~~~~~ 108 (116)
T 1x4b_A 97 VVEPKRAVAREE 108 (116)
T ss_dssp EEEEECCSSCCC
T ss_pred EEEEEECCCCcc
Confidence 999999987654
No 132
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.74 E-value=3.4e-18 Score=137.63 Aligned_cols=93 Identities=28% Similarity=0.485 Sum_probs=85.5
Q ss_pred CCCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 14 ~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
.+....+....++|||+||+.++++++|+++|++||.|.+|+|+.+..++.++|||||+|.+.++|++|++.|++..+.|
T Consensus 37 ~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g 116 (135)
T 2lea_A 37 YGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 116 (135)
T ss_dssp SCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS
T ss_pred cCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 44455666778999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred ceeEEeecCcCcc
Q 017119 94 KPIRVNKASQDKK 106 (377)
Q Consensus 94 ~~i~v~~~~~~~~ 106 (377)
+.|+|+++.....
T Consensus 117 ~~l~V~~a~~~~~ 129 (135)
T 2lea_A 117 RELRVQMARYGRP 129 (135)
T ss_dssp SCCEEEECCCCCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999987654
No 133
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=9.5e-18 Score=126.13 Aligned_cols=80 Identities=24% Similarity=0.238 Sum_probs=72.1
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc--cCCceeE
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK--LYGKPIR 97 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~--~~g~~i~ 97 (377)
....+++|||+||+.++|+++|+++|++||.|.+|++++ .||||||+|.+.++|++|++.|++.. +.|+.|+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 335788999999999999999999999999999999975 46899999999999999999998764 7899999
Q ss_pred EeecCcCc
Q 017119 98 VNKASQDK 105 (377)
Q Consensus 98 v~~~~~~~ 105 (377)
|++++.++
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99997654
No 134
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.1e-18 Score=128.13 Aligned_cols=81 Identities=21% Similarity=0.281 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHc--CceecCeeeEE
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN--GQYLCNRQITV 186 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~--~~~~~g~~l~v 186 (377)
...++|||+||++++++++|+++|++||.| .+++|+++ ||||||+|++.++|++|++.|+ +..|+|+.|+|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V-~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKV-TNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCE-EEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345789999999999999999999999998 57788764 7999999999999999999886 47899999999
Q ss_pred eeeeecCcCC
Q 017119 187 SYAYKKDTKG 196 (377)
Q Consensus 187 ~~a~~~~~~~ 196 (377)
+|++.+..+.
T Consensus 87 ~~A~~~~~~~ 96 (105)
T 1sjq_A 87 QFSNHKELKT 96 (105)
T ss_dssp CCCSSSSCCC
T ss_pred EEcCCCCCCc
Confidence 9998765543
No 135
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=9.4e-18 Score=129.53 Aligned_cols=84 Identities=29% Similarity=0.359 Sum_probs=78.4
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
.......++|||+||+.++++++|+++|++||.|.+|+|+.+. ++.++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3445678899999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred EeecC
Q 017119 98 VNKAS 102 (377)
Q Consensus 98 v~~~~ 102 (377)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 136
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5e-18 Score=128.91 Aligned_cols=84 Identities=26% Similarity=0.420 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCC---CCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD---TGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~---~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
..++|||+||++++++++|+++|++||.| ..+++.++.. ++.++|||||+|.+.++|++|++.|++..++|+.|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAI-KSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 45789999999999999999999999998 5778888776 6689999999999999999999999999999999999
Q ss_pred eeeeecCc
Q 017119 187 SYAYKKDT 194 (377)
Q Consensus 187 ~~a~~~~~ 194 (377)
+|++.+..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987654
No 137
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=130.21 Aligned_cols=84 Identities=21% Similarity=0.277 Sum_probs=74.7
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhc--CcccCCce
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN--MIKLYGKP 95 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~--~~~~~g~~ 95 (377)
......+++|||+||+++++|++|+++|++||.|.+|+|+.+ ||||||+|.+.++|++|++.++ +..+.|+.
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 344456889999999999999999999999999999999875 6899999999999999999887 46899999
Q ss_pred eEEeecCcCccc
Q 017119 96 IRVNKASQDKKS 107 (377)
Q Consensus 96 i~v~~~~~~~~~ 107 (377)
|+|+++..+...
T Consensus 99 l~V~~a~~k~~~ 110 (119)
T 2ad9_A 99 IYIQFSNHKELK 110 (119)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999876543
No 138
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=126.73 Aligned_cols=86 Identities=24% Similarity=0.463 Sum_probs=76.5
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+||++++++++|+++|++||.| ..++|.++.. .++|||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPC-KSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCE-EEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCE-eEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34456799999999999999999999999998 5778888754 37899999999999999999999999999999999
Q ss_pred eeeeecCcC
Q 017119 187 SYAYKKDTK 195 (377)
Q Consensus 187 ~~a~~~~~~ 195 (377)
+|++.+...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999876543
No 139
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.74 E-value=6e-18 Score=125.71 Aligned_cols=82 Identities=23% Similarity=0.449 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCC-ccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNL-HQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~-~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
+.++|||+||+.++++++|+++|++||.|.+|++..+..++. ++|||||+|.+.++|++|++.|++..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568999999999999999999999999999999999887655 8999999999999999999999999999999999998
Q ss_pred CcC
Q 017119 102 SQD 104 (377)
Q Consensus 102 ~~~ 104 (377)
...
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 140
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=6.3e-18 Score=134.86 Aligned_cols=86 Identities=29% Similarity=0.439 Sum_probs=79.8
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+||++++++++|+++|++||.| ..+++++|+.++.++|||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPI-ADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCE-EEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456799999999999999999999999998 67899999999999999999999999999999999999999999999
Q ss_pred eeeeecC
Q 017119 187 SYAYKKD 193 (377)
Q Consensus 187 ~~a~~~~ 193 (377)
+|++.+.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9997654
No 141
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4e-18 Score=133.23 Aligned_cols=86 Identities=27% Similarity=0.389 Sum_probs=79.8
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
.++...++|||+||+.++++++|+++|++||.|.+|+|+.++.++.++|||||+|.+.++|++|+ .|++..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 34456789999999999999999999999999999999999988999999999999999999999 89999999999999
Q ss_pred eecCcCc
Q 017119 99 NKASQDK 105 (377)
Q Consensus 99 ~~~~~~~ 105 (377)
+++....
T Consensus 99 ~~a~~~~ 105 (114)
T 2cq4_A 99 QASQAEK 105 (114)
T ss_dssp EEHHHHH
T ss_pred EecCCCc
Confidence 9986554
No 142
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.7e-18 Score=131.66 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=80.3
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHH---HHHHhcCCeEEEEEeccCCCC---CccceEEEEeCCHHHHHHHHHHhcCcc
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLW---ELFVQAGPVVNVYVPKDRVTN---LHQGYGFVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~---~~f~~~G~i~~v~i~~~~~~~---~~~g~afV~f~~~e~A~~A~~~l~~~~ 90 (377)
.+.....+++|||+||+.++++++|+ ++|++||.|.+|+++.+..++ .++|||||+|.+.++|++|++.|++..
T Consensus 8 ~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 8 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp SCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred ccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 44455678999999999999999999 999999999999999887644 456999999999999999999999999
Q ss_pred cCCceeEEeecCcCc
Q 017119 91 LYGKPIRVNKASQDK 105 (377)
Q Consensus 91 ~~g~~i~v~~~~~~~ 105 (377)
++|+.|+|+++..+.
T Consensus 88 ~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 88 VDGRTLKASLGTTKY 102 (111)
T ss_dssp ETTEEEEEESCCCCS
T ss_pred ECCEEEEEEeccccc
Confidence 999999999987765
No 143
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8.1e-18 Score=129.21 Aligned_cols=85 Identities=29% Similarity=0.550 Sum_probs=78.3
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhh-cCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCce-ecCeeeE
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSA-FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY-LCNRQIT 185 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~-~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~-~~g~~l~ 185 (377)
....++|||+||++++++++|+++|++ ||.| ..++|++|. ++.++|||||+|.+.++|++|++.|++.. ++|+.|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v-~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSC-RGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTE-EEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCe-EEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 345679999999999999999999999 9998 678999997 99999999999999999999999999999 9999999
Q ss_pred EeeeeecCc
Q 017119 186 VSYAYKKDT 194 (377)
Q Consensus 186 v~~a~~~~~ 194 (377)
|+|+..+..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999976654
No 144
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=126.51 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=72.9
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcC--cccCCcee
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNM--IKLYGKPI 96 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~--~~~~g~~i 96 (377)
.....+++|||+||++++++++|+++|++||.|.+|+++.+ ||||||+|.+.++|++|++.|++ ..+.|+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34457899999999999999999999999999999998763 68999999999999999998864 46999999
Q ss_pred EEeecCcCcc
Q 017119 97 RVNKASQDKK 106 (377)
Q Consensus 97 ~v~~~~~~~~ 106 (377)
+|+++..+..
T Consensus 84 ~V~~a~~~~~ 93 (104)
T 1wex_A 84 FFNYSTSKRI 93 (104)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCccc
Confidence 9999987653
No 145
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=131.34 Aligned_cols=85 Identities=27% Similarity=0.444 Sum_probs=78.1
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+||++++++++|+++|++||.| ..++|++++.++.++|||||+|.+.++|++|++.+++ .|+|+.|+|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDI-EEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCE-EEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCe-eEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 34456799999999999999999999999998 6789999999999999999999999999999999998 899999999
Q ss_pred eeeeecC
Q 017119 187 SYAYKKD 193 (377)
Q Consensus 187 ~~a~~~~ 193 (377)
+|+..+.
T Consensus 91 ~~a~~~~ 97 (116)
T 2cqd_A 91 NLAYLGA 97 (116)
T ss_dssp EESTTTC
T ss_pred EEcccCC
Confidence 9997653
No 146
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=8.9e-18 Score=136.10 Aligned_cols=87 Identities=32% Similarity=0.522 Sum_probs=80.1
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|+.||.| ..++|++++.++.++|||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPI-ESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCE-EEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3446799999999999999999999999998 678999999999999999999999999999999999999999999999
Q ss_pred eeeecCcC
Q 017119 188 YAYKKDTK 195 (377)
Q Consensus 188 ~a~~~~~~ 195 (377)
|++.+...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 147
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=8.9e-18 Score=125.08 Aligned_cols=81 Identities=26% Similarity=0.424 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
+.++|||+||+.++++++|+++|++||.|.+|++..+..++.++|||||+|.+.++|++|+ .+++..+.|+.|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999999999999999889999999999999999999999 899999999999999987
Q ss_pred cC
Q 017119 103 QD 104 (377)
Q Consensus 103 ~~ 104 (377)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 148
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=3.4e-18 Score=137.13 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=76.4
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCe--eecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeE
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVI--VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~v--v~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 185 (377)
....++|||+||++++|+++|+++|+.||.+ +..++|++|+. |+++|||||+|.+.++|++|++ |++..|+|+.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3446789999999999999999999999994 47889999977 9999999999999999999999 999999999999
Q ss_pred EeeeeecC
Q 017119 186 VSYAYKKD 193 (377)
Q Consensus 186 v~~a~~~~ 193 (377)
|.++..+.
T Consensus 119 V~~a~~~e 126 (136)
T 2hgl_A 119 VFKSHRTE 126 (136)
T ss_dssp EEECCHHH
T ss_pred EEECChHH
Confidence 99986543
No 149
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=127.98 Aligned_cols=87 Identities=24% Similarity=0.298 Sum_probs=78.6
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEE-EEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVN-VYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~-v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
...+....++|||+||++++++++|+++|++||.|.+ |+|+.+ .++.++|||||+|.+.++|++|++. ++..++|+.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~ 85 (104)
T 1wg5_A 8 NSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRY 85 (104)
T ss_dssp CCSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcE
Confidence 3445567899999999999999999999999999987 888888 6899999999999999999999996 999999999
Q ss_pred eEEeecCcCc
Q 017119 96 IRVNKASQDK 105 (377)
Q Consensus 96 i~v~~~~~~~ 105 (377)
|+|.++....
T Consensus 86 i~v~~~~~~~ 95 (104)
T 1wg5_A 86 IEIFKSSRAE 95 (104)
T ss_dssp CEEEEECTTT
T ss_pred EEEEECCHHH
Confidence 9999886554
No 150
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=1.1e-17 Score=133.15 Aligned_cols=89 Identities=26% Similarity=0.508 Sum_probs=81.2
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+||++++++++|+++|++||.| ..+.|+.+..++.++|||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEI-KNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCE-EEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 33446789999999999999999999999998 67899999889999999999999999999999999999999999999
Q ss_pred eeeeecCcCC
Q 017119 187 SYAYKKDTKG 196 (377)
Q Consensus 187 ~~a~~~~~~~ 196 (377)
+|+..+....
T Consensus 97 ~~a~~~~~~~ 106 (126)
T 3ex7_B 97 DWCFVRGPPK 106 (126)
T ss_dssp EESEESSSCC
T ss_pred EEecCCCCCC
Confidence 9998776543
No 151
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8.5e-18 Score=127.64 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=72.9
Q ss_pred ccccCCCCeEEEcCCCc-CCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcC--cccCCc
Q 017119 18 SAERNQDATAYVGNLDP-QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNM--IKLYGK 94 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~-~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~--~~~~g~ 94 (377)
....+.+++|||+||++ +++++||+++|++||.|.+|+|+++ ++||||+|.+.++|++|++.|++ ..+.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 82 (102)
T 1x4d_A 9 KGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGK 82 (102)
T ss_dssp CCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence 33445789999999999 9999999999999999999999764 47999999999999999998885 459999
Q ss_pred eeEEeecCcCc
Q 017119 95 PIRVNKASQDK 105 (377)
Q Consensus 95 ~i~v~~~~~~~ 105 (377)
.|+|+++...+
T Consensus 83 ~l~V~~a~~~~ 93 (102)
T 1x4d_A 83 PVRVHLSQKYK 93 (102)
T ss_dssp ECEEEEECCCT
T ss_pred EEEEEECCCCC
Confidence 99999998654
No 152
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.7e-18 Score=129.00 Aligned_cols=87 Identities=26% Similarity=0.440 Sum_probs=79.6
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+||++++++++|+++|++||.| ..++|++++.++.++|||||+|.+.++|++|++. ++..|+|+.|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEV-VDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCE-EEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 34456799999999999999999999999998 5789999999999999999999999999999998 999999999999
Q ss_pred eeeeecCcC
Q 017119 187 SYAYKKDTK 195 (377)
Q Consensus 187 ~~a~~~~~~ 195 (377)
+|+..+...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 153
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.74 E-value=2e-18 Score=131.53 Aligned_cols=82 Identities=21% Similarity=0.297 Sum_probs=77.2
Q ss_pred CCeEEEcCCCC------cCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC-ee
Q 017119 111 GANLFIGNLDP------DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN-RQ 183 (377)
Q Consensus 111 ~~~l~V~nl~~------~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g-~~ 183 (377)
+++|||+||++ ++++++|+++|++||.| ..++|++|+.++++||||||+|.+.++|++|++.||+..++| +.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i-~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKV-VNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCE-EEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCE-eEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 56899999999 99999999999999998 578999999999999999999999999999999999999999 99
Q ss_pred eEEeeeeecC
Q 017119 184 ITVSYAYKKD 193 (377)
Q Consensus 184 l~v~~a~~~~ 193 (377)
|+|+|+..+.
T Consensus 85 l~V~~a~~~~ 94 (100)
T 3ns6_A 85 LFLYTMKDVE 94 (100)
T ss_dssp CEEEESHHHH
T ss_pred EEEEECchhh
Confidence 9999997643
No 154
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=3.8e-18 Score=134.11 Aligned_cols=85 Identities=21% Similarity=0.194 Sum_probs=77.7
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCC---eEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCc
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGP---VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK 94 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~ 94 (377)
..+....++|||+||++++|+++|+++|+.||. |.+|+|+.++. +.++|||||+|.+.++|++|++ +++..+.|+
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 88 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHR 88 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe
Confidence 344567889999999999999999999999999 89999999886 8999999999999999999999 999999999
Q ss_pred eeEEeecCcC
Q 017119 95 PIRVNKASQD 104 (377)
Q Consensus 95 ~i~v~~~~~~ 104 (377)
.|+|.++..+
T Consensus 89 ~i~V~~a~~~ 98 (118)
T 2db1_A 89 YIEVFKSHRT 98 (118)
T ss_dssp EEEEEEECHH
T ss_pred EEEEEECCHH
Confidence 9999887543
No 155
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.74 E-value=1.6e-17 Score=124.46 Aligned_cols=84 Identities=26% Similarity=0.365 Sum_probs=77.9
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
....++|||+||+.++++++|+++|++||.|.+|+++.+ ++.++|||||+|.+.++|++|++.|++..+.|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999874 688999999999999999999999999999999999999
Q ss_pred cCcCcc
Q 017119 101 ASQDKK 106 (377)
Q Consensus 101 ~~~~~~ 106 (377)
+.....
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 877653
No 156
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=127.92 Aligned_cols=84 Identities=26% Similarity=0.501 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCC-CCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDT-GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~-~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
...++|||+||++++++++|+++|+.|| | ..++|++++.+ +.++|||||+|.+.++|++|+ .|++..|+|+.|+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i-~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-I-SAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-E-EEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-c-eEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 4457999999999999999999999999 6 67899999887 999999999999999999999 999999999999999
Q ss_pred eeeecCcC
Q 017119 188 YAYKKDTK 195 (377)
Q Consensus 188 ~a~~~~~~ 195 (377)
|+..+...
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99876543
No 157
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=2.5e-17 Score=130.64 Aligned_cols=85 Identities=27% Similarity=0.330 Sum_probs=80.0
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
....+++|||+||+.++++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|++|++.|++..+.|+.|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44677899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred ecCcCc
Q 017119 100 KASQDK 105 (377)
Q Consensus 100 ~~~~~~ 105 (377)
++....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 987654
No 158
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=8.5e-18 Score=121.81 Aligned_cols=74 Identities=22% Similarity=0.264 Sum_probs=67.7
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
+.-|||+||++.+|+++|+++|.+||.|+ ++++.. +||||||+|.+.++|++|++.||+..++|+.|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~-~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLV-SFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEE-EEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEE-EEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45799999999999999999999999994 566643 79999999999999999999999999999999999995
Q ss_pred e
Q 017119 191 K 191 (377)
Q Consensus 191 ~ 191 (377)
+
T Consensus 80 e 80 (89)
T 2wbr_A 80 E 80 (89)
T ss_dssp H
T ss_pred H
Confidence 4
No 159
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-17 Score=125.85 Aligned_cols=86 Identities=26% Similarity=0.423 Sum_probs=76.9
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+||++++++++|+++|++||.| ..++|+++.. .++|||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v-~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKI-LDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCE-EEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456799999999999999999999999998 5778888754 38999999999999999999999999999999999
Q ss_pred eeeeecCcC
Q 017119 187 SYAYKKDTK 195 (377)
Q Consensus 187 ~~a~~~~~~ 195 (377)
+|+..+...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999876544
No 160
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=1.2e-17 Score=127.94 Aligned_cols=84 Identities=21% Similarity=0.427 Sum_probs=77.3
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++|| | ..+++++++.++.++|||||+|.+.++|++|+ .|++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-I-RSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-E-EEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-c-eEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 34567999999999999999999999996 5 67899999999999999999999999999999 899999999999999
Q ss_pred eeeecCc
Q 017119 188 YAYKKDT 194 (377)
Q Consensus 188 ~a~~~~~ 194 (377)
|+..+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9987654
No 161
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.73 E-value=1.6e-17 Score=137.33 Aligned_cols=87 Identities=31% Similarity=0.474 Sum_probs=81.7
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
.....++|||+||+.++++++|+++|++||.|.+|+|+.+..++.++|||||+|.+.++|++|++.|++..|.|+.|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34577999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ecCcCcc
Q 017119 100 KASQDKK 106 (377)
Q Consensus 100 ~~~~~~~ 106 (377)
++.....
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9986553
No 162
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-17 Score=124.41 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=75.0
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC--Cc
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY--GK 94 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~--g~ 94 (377)
........++|||+||+.++++++|+++|++||.|.+|++..+ ++||||+|.+.++|++|++.|++..+. |+
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~ 83 (97)
T 1why_A 10 GYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDR 83 (97)
T ss_dssp CCCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSC
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCc
Confidence 3445567799999999999999999999999999999999653 689999999999999999999999999 99
Q ss_pred eeEEeecCcCc
Q 017119 95 PIRVNKASQDK 105 (377)
Q Consensus 95 ~i~v~~~~~~~ 105 (377)
.|+|+++..+.
T Consensus 84 ~l~V~~a~~~~ 94 (97)
T 1why_A 84 RLRVDFAKSGP 94 (97)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEECCCCC
Confidence 99999987654
No 163
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=2.7e-18 Score=129.60 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=76.0
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
.....++|||+||+.++++++|+++|++||.|.+++++.++.++.++|||||+|.+.++|++|++.|++..+.|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 34456899999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred ecC
Q 017119 100 KAS 102 (377)
Q Consensus 100 ~~~ 102 (377)
+++
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 875
No 164
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-18 Score=127.05 Aligned_cols=81 Identities=27% Similarity=0.401 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
...++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|++.+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999988765
Q ss_pred C
Q 017119 102 S 102 (377)
Q Consensus 102 ~ 102 (377)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 165
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=8.4e-18 Score=129.91 Aligned_cols=85 Identities=31% Similarity=0.583 Sum_probs=78.8
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.++|++|++.|++..++|+.|+|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRI-ESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCE-EEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3445789999999999999999999999998 678999999999999999999999999999999999999999999999
Q ss_pred eeeecC
Q 017119 188 YAYKKD 193 (377)
Q Consensus 188 ~a~~~~ 193 (377)
|++.+.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 997653
No 166
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.6e-17 Score=124.22 Aligned_cols=84 Identities=23% Similarity=0.280 Sum_probs=78.0
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
......++|||+||+.++++++|+++|++| .|.+|+++.+ .++.++|||||+|.+.++|++|++ +++..+.|+.|+|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 345678999999999999999999999999 9999999999 689999999999999999999999 9999999999999
Q ss_pred eecCcCc
Q 017119 99 NKASQDK 105 (377)
Q Consensus 99 ~~~~~~~ 105 (377)
.++....
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9987653
No 167
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=5.5e-18 Score=121.95 Aligned_cols=75 Identities=31% Similarity=0.468 Sum_probs=72.1
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
+|||+||+.++++++|+++|++||.|.+|++..+..++.++|||||+|.+.++|++|++ +++..++|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998889999999999999999999998 9999999999999875
No 168
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=133.72 Aligned_cols=86 Identities=35% Similarity=0.599 Sum_probs=79.7
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
.........++|||+||+.++++++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 55 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 55 GSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 134 (140)
T ss_dssp SSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE
T ss_pred CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34455668899999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred eEEeec
Q 017119 96 IRVNKA 101 (377)
Q Consensus 96 i~v~~~ 101 (377)
|+|+++
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999875
No 169
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=4.4e-18 Score=129.68 Aligned_cols=85 Identities=31% Similarity=0.440 Sum_probs=75.1
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccC-CCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDR-VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~-~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
......++|||+||+.++++++|+++|++|| |.+|+|+.+. .++.++|||||+|.+.++|++|+ .|++..+.|+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 4456789999999999999999999999999 9999999988 58999999999999999999999 7999999999999
Q ss_pred EeecCcCc
Q 017119 98 VNKASQDK 105 (377)
Q Consensus 98 v~~~~~~~ 105 (377)
|+++..+.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99987653
No 170
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=126.94 Aligned_cols=83 Identities=16% Similarity=0.254 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|++||.| ..++++.++.++.++|||||+|.+.++|++|++.|++..|+|+.|+|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v-~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVI-PGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCC-TTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCc-cceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345689999999999999999999999998 5678888889999999999999999999999999999999999999999
Q ss_pred eeec
Q 017119 189 AYKK 192 (377)
Q Consensus 189 a~~~ 192 (377)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 171
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=128.56 Aligned_cols=85 Identities=32% Similarity=0.503 Sum_probs=77.1
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+||++++++++|+++|++||.| ..++|.+++ ++.++|||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i-~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVV-VRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCE-EEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 33456799999999999999999999999998 577888886 5999999999999999999999999999999999999
Q ss_pred eeeeecC
Q 017119 187 SYAYKKD 193 (377)
Q Consensus 187 ~~a~~~~ 193 (377)
+|++...
T Consensus 89 ~~a~~~~ 95 (114)
T 2do0_A 89 KMDERAL 95 (114)
T ss_dssp EECSCCC
T ss_pred EEcccCC
Confidence 9987644
No 172
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=124.74 Aligned_cols=81 Identities=17% Similarity=0.292 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCcCCHHHHH----HHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeee
Q 017119 109 DVGANLFIGNLDPDVDEKLLY----DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQI 184 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l 184 (377)
...++|||+||++++++++|+ ++|++||.| ..+++..|+.+ +|||||+|.+.++|++|++.||+..++|+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v-~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKV-KSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCE-EEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcE-EEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 345689999999999999999 999999998 57889888765 8999999999999999999999999999999
Q ss_pred EEeeeeecC
Q 017119 185 TVSYAYKKD 193 (377)
Q Consensus 185 ~v~~a~~~~ 193 (377)
+|+|++...
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997654
No 173
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.3e-17 Score=129.12 Aligned_cols=84 Identities=29% Similarity=0.504 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.++|++|++.+ +..++|+.|+|+|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEV-KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCE-EEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCe-EEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 445789999999999999999999999998 67899999999999999999999999999999976 5999999999999
Q ss_pred eeecCc
Q 017119 189 AYKKDT 194 (377)
Q Consensus 189 a~~~~~ 194 (377)
+..+..
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 986643
No 174
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=125.40 Aligned_cols=82 Identities=33% Similarity=0.581 Sum_probs=75.4
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..+++.++.. +.++|||||+|.+.++|++|++.|++..++|+.|+|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i-~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPL-TKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCE-EEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCE-EEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 3445799999999999999999999999998 5788988865 8999999999999999999999999999999999999
Q ss_pred eeee
Q 017119 188 YAYK 191 (377)
Q Consensus 188 ~a~~ 191 (377)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 175
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.2e-18 Score=131.73 Aligned_cols=85 Identities=19% Similarity=0.204 Sum_probs=78.2
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCe-EEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPV-VNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
......++|||+||++++++++|+++|++||.| .+|+|+.+. ++.++|||||+|.+.++|++|++. ++..+.|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 455678999999999999999999999999999 899999998 899999999999999999999996 99999999999
Q ss_pred EeecCcCc
Q 017119 98 VNKASQDK 105 (377)
Q Consensus 98 v~~~~~~~ 105 (377)
|.++..+.
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99986543
No 176
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=128.22 Aligned_cols=85 Identities=24% Similarity=0.365 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCC-eEEEEEe-ccCCCCCccceEEEEeCCHHHHHHHHHHhc--CcccCCceeE
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVP-KDRVTNLHQGYGFVEFRSEEDADYAIKVLN--MIKLYGKPIR 97 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~-i~~v~i~-~~~~~~~~~g~afV~f~~~e~A~~A~~~l~--~~~~~g~~i~ 97 (377)
..+++|||+||+.++++++|+++|++||. |.+|+++ .+..++.++|||||+|.+.++|++|++.|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 9999998 788888999999999999999999999996 5899999999
Q ss_pred EeecCcCcc
Q 017119 98 VNKASQDKK 106 (377)
Q Consensus 98 v~~~~~~~~ 106 (377)
|+++..+..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987653
No 177
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=8.1e-18 Score=133.53 Aligned_cols=86 Identities=22% Similarity=0.404 Sum_probs=79.8
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
.....++|||+||+.++++++|+++|++||.|.+|+++.++.++.++|||||+|.+.++|++|+ .|++..+.|+.|+|.
T Consensus 32 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 32 KEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVL 110 (124)
T ss_dssp HHHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 3346789999999999999999999999999999999999889999999999999999999999 699999999999999
Q ss_pred ecCcCcc
Q 017119 100 KASQDKK 106 (377)
Q Consensus 100 ~~~~~~~ 106 (377)
++.....
T Consensus 111 ~a~~~~~ 117 (124)
T 2jwn_A 111 PKRTNMP 117 (124)
T ss_dssp ESSCCCS
T ss_pred ECCCCCC
Confidence 9876553
No 178
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=1.2e-17 Score=126.06 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=74.5
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
.++|||+||++++++++|+++|++||.| ..++++.++.++.++|||||+|.+.++|++|++.|++..|+|+.|+|+++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVI-PGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBC-TTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCc-cceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 4689999999999999999999999998 567888888999999999999999999999999999999999999999985
Q ss_pred e
Q 017119 191 K 191 (377)
Q Consensus 191 ~ 191 (377)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 179
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=2.3e-18 Score=138.61 Aligned_cols=123 Identities=15% Similarity=0.175 Sum_probs=73.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC-cCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceee
Q 017119 67 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS-QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIM 145 (377)
Q Consensus 67 g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~-~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~ 145 (377)
++||.+|...+.+..++....... .+....-.... .........++|||+||++++++++|+++|++|| ++ .++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~-gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~-~v~i~ 78 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMT-GGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PV-RVHIE 78 (139)
T ss_dssp --------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CS-EEECC
T ss_pred CcccccccCccccchhcccchhcc-CCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-Ce-EEEEE
Confidence 567777777777766666544332 22222111111 1122334457899999999999999999999999 53 78999
Q ss_pred cCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecCc
Q 017119 146 RDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDT 194 (377)
Q Consensus 146 ~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~~ 194 (377)
+|+. ++++|||||+|.+.++|++|| .+++..|+|+.|+|.++.....
T Consensus 79 ~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 79 IGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred ECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 9965 999999999999999999999 7899999999999998876543
No 180
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=123.64 Aligned_cols=81 Identities=19% Similarity=0.421 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCC-CcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN-SRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
.++|||+||++++++++|+++|++||.| ..+++..+..++. ++|||||+|.+.++|++|++.|++..++|+.|+|+++
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKI-KMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCE-EEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999998 5778888877766 9999999999999999999999999999999999999
Q ss_pred eec
Q 017119 190 YKK 192 (377)
Q Consensus 190 ~~~ 192 (377)
...
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 181
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.2e-17 Score=124.43 Aligned_cols=86 Identities=22% Similarity=0.419 Sum_probs=77.7
Q ss_pred cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeE
Q 017119 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185 (377)
Q Consensus 106 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 185 (377)
......++|||+||++++++++|+++|++||.| ..++|++++.++.++|||||+|.+.++|++|++ ++..++|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEV-LMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCE-EEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCe-EEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 344556789999999999999999999999998 578999999999999999999999999999998 57899999999
Q ss_pred EeeeeecCc
Q 017119 186 VSYAYKKDT 194 (377)
Q Consensus 186 v~~a~~~~~ 194 (377)
|+|+..+..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999987654
No 182
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=125.25 Aligned_cols=86 Identities=31% Similarity=0.417 Sum_probs=76.6
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
........++|||+||+.++++++|+++|++||.| +++.+ .++.++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 34456678999999999999999999999999976 56665 578899999999999999999999999999999999
Q ss_pred EEeecCcCcc
Q 017119 97 RVNKASQDKK 106 (377)
Q Consensus 97 ~v~~~~~~~~ 106 (377)
+|+++.....
T Consensus 84 ~v~~a~~~~~ 93 (101)
T 2fc9_A 84 RLELQGPRGS 93 (101)
T ss_dssp EEEECSSCCC
T ss_pred EEEEcCCCCC
Confidence 9999987654
No 183
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=2.4e-17 Score=122.20 Aligned_cols=80 Identities=33% Similarity=0.537 Sum_probs=73.8
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..+++++++.++.++|||||+|.+.++|++|++ +++..++|+.|+|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEV-VDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCE-EEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 3456799999999999999999999999998 678999999999999999999999999999996 58889999999999
Q ss_pred ee
Q 017119 188 YA 189 (377)
Q Consensus 188 ~a 189 (377)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 184
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.72 E-value=4.3e-17 Score=135.00 Aligned_cols=87 Identities=29% Similarity=0.489 Sum_probs=81.5
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
.....++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCcCcc
Q 017119 100 KASQDKK 106 (377)
Q Consensus 100 ~~~~~~~ 106 (377)
++.....
T Consensus 146 ~a~~~~~ 152 (158)
T 2kn4_A 146 MARYGRP 152 (158)
T ss_dssp EECCSSC
T ss_pred ECCCCCC
Confidence 9987653
No 185
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.2e-17 Score=123.91 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=71.8
Q ss_pred cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHc--CceecCee
Q 017119 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN--GQYLCNRQ 183 (377)
Q Consensus 106 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~--~~~~~g~~ 183 (377)
......++|||+||++++++++|+++|++||.| ..++++++ ||||||+|++.++|++|++.|+ +..++|+.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v-~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKV-TNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCE-EEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 344556799999999999999999999999998 46677654 8999999999999999999875 67899999
Q ss_pred eEEeeeeecCcC
Q 017119 184 ITVSYAYKKDTK 195 (377)
Q Consensus 184 l~v~~a~~~~~~ 195 (377)
|+|+|++.+..+
T Consensus 83 l~V~~a~~~~~~ 94 (101)
T 2cq1_A 83 IYIQYSNHKELK 94 (101)
T ss_dssp CEEEECSCSSCC
T ss_pred EEEEEcCcccCc
Confidence 999999876654
No 186
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=9.9e-18 Score=120.59 Aligned_cols=75 Identities=24% Similarity=0.483 Sum_probs=71.2
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
+|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.++|++|++ +++..++|+.|+|+||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKV-DDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCC-SEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCE-EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999998 578899998899999999999999999999998 9999999999999986
No 187
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=126.99 Aligned_cols=86 Identities=23% Similarity=0.311 Sum_probs=77.4
Q ss_pred ccccCCCCeEEEcCCCcCC------CHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCccc
Q 017119 18 SAERNQDATAYVGNLDPQV------TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL 91 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~------te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~ 91 (377)
..+...+++|||+||+.++ ++++|+++|++||.|.+|++. +.++.++|||||+|.+.++|++|++.|++..+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 9 QEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp CSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred CCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 3345567899999999999 789999999999999999998 35789999999999999999999999999999
Q ss_pred CCc-eeEEeecCcCc
Q 017119 92 YGK-PIRVNKASQDK 105 (377)
Q Consensus 92 ~g~-~i~v~~~~~~~ 105 (377)
.|+ .|+|+++...+
T Consensus 87 ~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 87 DKQHTFRVNLFTDFD 101 (105)
T ss_dssp STTCEEEEECSCCCC
T ss_pred CCCceEEEEEcchHh
Confidence 998 99999987554
No 188
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-17 Score=127.21 Aligned_cols=84 Identities=19% Similarity=0.318 Sum_probs=77.2
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCccc-------
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL------- 91 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~------- 91 (377)
.+....++|||+||+.++++++|+++|++||.|.+|+|+.+. ++.++|||||+|.+.++|++|++.|++..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 445678899999999999999999999999999999999998 899999999999999999999999999998
Q ss_pred -CCceeEEeecCc
Q 017119 92 -YGKPIRVNKASQ 103 (377)
Q Consensus 92 -~g~~i~v~~~~~ 103 (377)
.++.|+|.++..
T Consensus 99 ~~~~~l~v~~a~p 111 (114)
T 1x5o_A 99 APTEPLLCKFSGP 111 (114)
T ss_dssp CCSSCBEEEECCC
T ss_pred CCCCceeEEccCC
Confidence 577788888764
No 189
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.72 E-value=1.9e-17 Score=123.30 Aligned_cols=80 Identities=23% Similarity=0.441 Sum_probs=75.3
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
.++|||+||++++++++|+++|++||.| ..+++.++..++.++|||||+|.+.++|++|+ .|++..++|+.|+|++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSV-NRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCE-EEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4689999999999999999999999998 67899999899999999999999999999999 899999999999999986
Q ss_pred ec
Q 017119 191 KK 192 (377)
Q Consensus 191 ~~ 192 (377)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 190
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=130.10 Aligned_cols=82 Identities=23% Similarity=0.387 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||++++++++|+++|++||.| ..++|++|+.++.++|||||+|.+.++|++|+ .|++..|+|+.|+|+|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKV-RDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCE-EEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCE-eEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34689999999999999999999999998 67899999999999999999999999999999 99999999999999999
Q ss_pred eecC
Q 017119 190 YKKD 193 (377)
Q Consensus 190 ~~~~ 193 (377)
+.+.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7654
No 191
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=3.5e-17 Score=135.29 Aligned_cols=87 Identities=26% Similarity=0.365 Sum_probs=80.1
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+||++++++++|+++|++||.| ..|+|++++.++.++|||||+|.+.++|++||+.|++..|+|+.|+|
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDI-KKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 33456799999999999999999999999998 57899999999999999999999999999999999999999999999
Q ss_pred eeeeecCc
Q 017119 187 SYAYKKDT 194 (377)
Q Consensus 187 ~~a~~~~~ 194 (377)
+|++....
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99986543
No 192
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=6.8e-18 Score=122.10 Aligned_cols=76 Identities=32% Similarity=0.425 Sum_probs=73.0
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
++|||+||+.++++++|+++|++||.|.+|++..+..++.++|||||+|.+.++|++|++.++ ..++|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999998889999999999999999999999888 9999999999886
No 193
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.71 E-value=9e-18 Score=127.94 Aligned_cols=82 Identities=27% Similarity=0.513 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCC-CCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDP-DTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~-~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
...++|||+||++++++++|+++|++|| | ..+++.+++ .+++++|||||+|.+.++|++|+ .|++..++|+.|+|+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i-~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-I-SAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-E-EEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-C-eEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 4457999999999999999999999999 6 678999988 68999999999999999999999 899999999999999
Q ss_pred eeeecC
Q 017119 188 YAYKKD 193 (377)
Q Consensus 188 ~a~~~~ 193 (377)
|++.+.
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 997653
No 194
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-17 Score=128.47 Aligned_cols=83 Identities=28% Similarity=0.536 Sum_probs=77.7
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
.++|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.++|++|++.|++..++|+.|+|+|+.
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i-~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPV-VSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCC-SEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCe-eEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 4689999999999999999999999998 578999998899999999999999999999999999999999999999997
Q ss_pred ecCc
Q 017119 191 KKDT 194 (377)
Q Consensus 191 ~~~~ 194 (377)
.+..
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 6643
No 195
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=3.3e-17 Score=126.47 Aligned_cols=81 Identities=22% Similarity=0.407 Sum_probs=75.7
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..++|+++. ++.++|||||+|.+.++|++|++.|++..++|+.|+|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTL-KKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456789999999999999999999999998 678999997 89999999999999999999999999999999999999
Q ss_pred eee
Q 017119 188 YAY 190 (377)
Q Consensus 188 ~a~ 190 (377)
|+.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 985
No 196
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=4.8e-18 Score=129.76 Aligned_cols=86 Identities=23% Similarity=0.388 Sum_probs=77.4
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
.+....++|||+||+.++++++|+++|++||.|.. .++.+..++.++|||||+|.+.++|++|++ |++..+.|+.|+|
T Consensus 12 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V 89 (101)
T 1fj7_A 12 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 89 (101)
T ss_dssp TTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEE
Confidence 34456789999999999999999999999999888 667777778899999999999999999999 9999999999999
Q ss_pred eecCcCcc
Q 017119 99 NKASQDKK 106 (377)
Q Consensus 99 ~~~~~~~~ 106 (377)
+++..+..
T Consensus 90 ~~a~~~~~ 97 (101)
T 1fj7_A 90 EKPKGRDG 97 (101)
T ss_dssp ECCSCCCC
T ss_pred EEcCCCCC
Confidence 99976653
No 197
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=3.4e-17 Score=122.74 Aligned_cols=83 Identities=29% Similarity=0.455 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|++||.| ..+++.+ .++.++|||||+|.+.++|++|++.|++..++|+.|+|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v-~~~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHV-LYADIKM--ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCE-EEEEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEc--cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345799999999999999999999999998 5667776 4789999999999999999999999999999999999999
Q ss_pred eeecCc
Q 017119 189 AYKKDT 194 (377)
Q Consensus 189 a~~~~~ 194 (377)
++....
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 977643
No 198
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=9.8e-17 Score=123.96 Aligned_cols=80 Identities=30% Similarity=0.383 Sum_probs=74.2
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC-----c
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG-----K 94 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g-----~ 94 (377)
.....++|||+||+.++++++|+++|++||.|.+|+|+.+ |||||+|.+.++|++|++.|++..+.| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3467899999999999999999999999999999999876 799999999999999999999999999 9
Q ss_pred eeEEeecCcCcc
Q 017119 95 PIRVNKASQDKK 106 (377)
Q Consensus 95 ~i~v~~~~~~~~ 106 (377)
.|+|+++.....
T Consensus 84 ~i~V~~a~~~~~ 95 (108)
T 1x4c_A 84 YIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEESSCCSC
T ss_pred EEEEEeCCCCCC
Confidence 999999987653
No 199
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7e-18 Score=124.52 Aligned_cols=80 Identities=24% Similarity=0.407 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||++++++++|+++|++||.| ..+++..++.++.++|||||+|.+.++|++|++.||+..++|+.|+++|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i-~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKI-VSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCE-EEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45799999999999999999999999998 57899999999999999999999999999999999999999999999886
Q ss_pred e
Q 017119 190 Y 190 (377)
Q Consensus 190 ~ 190 (377)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 200
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=4.2e-18 Score=127.14 Aligned_cols=80 Identities=41% Similarity=0.559 Sum_probs=74.1
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcC
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQD 104 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~ 104 (377)
++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.+ |++|++.|++..++|+.|+|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999988999999999999999 99999999999999999999998765
Q ss_pred c
Q 017119 105 K 105 (377)
Q Consensus 105 ~ 105 (377)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 201
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.5e-17 Score=125.62 Aligned_cols=83 Identities=16% Similarity=0.237 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|+.||.|...++|.++ .+++++|||||+|.+.++|++||+. ++..++|+.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 456799999999999999999999999998544788888 8899999999999999999999997 99999999999999
Q ss_pred eeecC
Q 017119 189 AYKKD 193 (377)
Q Consensus 189 a~~~~ 193 (377)
+..+.
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87654
No 202
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=124.45 Aligned_cols=84 Identities=31% Similarity=0.514 Sum_probs=75.6
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+||++++++++|+++|+.|+ .+++++++.++.++|||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~----~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV----RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS----EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe----EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 344567999999999999999999999874 3477888889999999999999999999999999999999999999
Q ss_pred eeeeecCc
Q 017119 187 SYAYKKDT 194 (377)
Q Consensus 187 ~~a~~~~~ 194 (377)
+|++.+..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99987654
No 203
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5.5e-17 Score=123.34 Aligned_cols=82 Identities=33% Similarity=0.544 Sum_probs=75.1
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
.......++|||+||+.++++++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 9 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 344567889999999999999999999999999999999753 68999999999999999999999999999999
Q ss_pred EeecCcCc
Q 017119 98 VNKASQDK 105 (377)
Q Consensus 98 v~~~~~~~ 105 (377)
|.++....
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpj_A 83 VRFACHSA 90 (99)
T ss_dssp EEESSCCS
T ss_pred EEEcCCCC
Confidence 99998765
No 204
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.5e-17 Score=123.81 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=74.3
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+||++++++++|+++|++||.| +++++ .++.++|||||+|.+.++|++|++.|++..|+|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v----~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI----KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE----ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE----EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 34456899999999999999999999999977 45555 67899999999999999999999999999999999999
Q ss_pred eeeeecCc
Q 017119 187 SYAYKKDT 194 (377)
Q Consensus 187 ~~a~~~~~ 194 (377)
+|++.+..
T Consensus 86 ~~a~~~~~ 93 (101)
T 2fc9_A 86 ELQGPRGS 93 (101)
T ss_dssp EECSSCCC
T ss_pred EEcCCCCC
Confidence 99987643
No 205
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.7e-17 Score=120.24 Aligned_cols=79 Identities=30% Similarity=0.467 Sum_probs=73.2
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
....++|||+||+.++++++|+++|++||.|.+|+++ ++||||+|.+.++|++|++.|++..+.|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4577899999999999999999999999999999996 57999999999999999999999999999999999
Q ss_pred cCcCccc
Q 017119 101 ASQDKKS 107 (377)
Q Consensus 101 ~~~~~~~ 107 (377)
+......
T Consensus 77 a~~~~~~ 83 (90)
T 2dnq_A 77 SKNKSKA 83 (90)
T ss_dssp SSCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 206
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.5e-17 Score=128.28 Aligned_cols=83 Identities=31% Similarity=0.537 Sum_probs=77.4
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||++++++++|+++|++||.| ..++|++++.++.++|||||+|.+.++|++||+. ++..|+|+.|+|+|+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKL-TDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCC-SEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 34789999999999999999999999998 5789999999999999999999999999999998 999999999999999
Q ss_pred eecCc
Q 017119 190 YKKDT 194 (377)
Q Consensus 190 ~~~~~ 194 (377)
..+..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87654
No 207
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=127.22 Aligned_cols=81 Identities=23% Similarity=0.249 Sum_probs=73.9
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
...+.++|||+||+++++++||+++|+.| .|.+|+|+.++. +.++|||||+|.+.++|++|+ .+++..++|+.|.|.
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVS 88 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 34456899999999999999999999999 899999999875 899999999999999999999 599999999999998
Q ss_pred ecCc
Q 017119 100 KASQ 103 (377)
Q Consensus 100 ~~~~ 103 (377)
.+..
T Consensus 89 ~a~~ 92 (109)
T 2dnn_A 89 PATE 92 (109)
T ss_dssp ECCH
T ss_pred ECCc
Confidence 7754
No 208
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.6e-17 Score=121.28 Aligned_cols=81 Identities=20% Similarity=0.296 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|+.| .| ..++++++ .++.++|||||+|.+.++|++|++ |++..++|+.|+|.+
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i-~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KP-VAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CC-SEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-Cc-eEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 345789999999999999999999999 66 57899998 889999999999999999999999 999999999999999
Q ss_pred eeecC
Q 017119 189 AYKKD 193 (377)
Q Consensus 189 a~~~~ 193 (377)
+..+.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 97764
No 209
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-17 Score=126.08 Aligned_cols=85 Identities=19% Similarity=0.197 Sum_probs=76.8
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
.......++|||+||++++|++||+++|++||.+ +|+|+.++ ++.++|||||+|.+.++|++|++ +++..+.++.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVE 85 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 3455677899999999999999999999999954 99999998 89999999999999999999996 799999999999
Q ss_pred EeecCcCc
Q 017119 98 VNKASQDK 105 (377)
Q Consensus 98 v~~~~~~~ 105 (377)
|..+....
T Consensus 86 V~~~~~~~ 93 (102)
T 1wez_A 86 LFLNSTAG 93 (102)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 98877654
No 210
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.4e-17 Score=120.45 Aligned_cols=76 Identities=30% Similarity=0.503 Sum_probs=72.4
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
++|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.++|++|++.++ ..++|+.|+|+||
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEV-KECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCC-CCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999998 678999999999999999999999999999999999 9999999999987
No 211
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.2e-17 Score=126.50 Aligned_cols=82 Identities=21% Similarity=0.266 Sum_probs=71.9
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcC--ceecCeeeE
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG--QYLCNRQIT 185 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~--~~~~g~~l~ 185 (377)
...+++|||+||++++++++|+++|++||.| .+++|+++ ||||||+|++.++|++|++.|++ ..|+|+.|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V-~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKV-TNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCC-CEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 3446789999999999999999999999998 56777764 79999999999999999999874 689999999
Q ss_pred EeeeeecCcCC
Q 017119 186 VSYAYKKDTKG 196 (377)
Q Consensus 186 v~~a~~~~~~~ 196 (377)
|+|++.+..+.
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99998776543
No 212
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=126.98 Aligned_cols=85 Identities=18% Similarity=0.238 Sum_probs=76.2
Q ss_pred cCCCCeEEEcCCCCcCCHHHHH---HHHhhcCCeeecceeecCCCCC---CCcceEEEEeCCHHHHHHHHHHHcCceecC
Q 017119 108 LDVGANLFIGNLDPDVDEKLLY---DTFSAFGVIVTNPKIMRDPDTG---NSRGFGFISYDSFEASDAAIEAMNGQYLCN 181 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~---~~f~~~G~vv~~~~i~~d~~~~---~~kg~afV~f~~~~~A~~a~~~l~~~~~~g 181 (377)
....++|||+||++++++++|+ ++|++||.| ..+++.++..++ .++|||||+|.+.++|++|++.||+..|+|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i-~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKI-HKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCE-EEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCE-EEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 3446789999999999999999 999999998 577888887654 456999999999999999999999999999
Q ss_pred eeeEEeeeeecC
Q 017119 182 RQITVSYAYKKD 193 (377)
Q Consensus 182 ~~l~v~~a~~~~ 193 (377)
+.|+|+|+..+.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998765
No 213
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=1e-17 Score=134.33 Aligned_cols=84 Identities=20% Similarity=0.179 Sum_probs=77.8
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCC---eEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGP---VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
.+..+.++|||+||++++|+++|+++|++||. |.+|+|+.++. +.++|||||+|.+.++|++|++ +++..++|+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 44567889999999999999999999999999 89999999986 9999999999999999999999 9999999999
Q ss_pred eEEeecCcC
Q 017119 96 IRVNKASQD 104 (377)
Q Consensus 96 i~v~~~~~~ 104 (377)
|+|.++...
T Consensus 117 i~V~~a~~~ 125 (136)
T 2hgl_A 117 IEVFKSHRT 125 (136)
T ss_dssp EEEEECCHH
T ss_pred EEEEECChH
Confidence 999887543
No 214
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-17 Score=124.66 Aligned_cols=79 Identities=19% Similarity=0.260 Sum_probs=69.4
Q ss_pred cCCCCeEEEcCCCC-cCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcC--ceecCeee
Q 017119 108 LDVGANLFIGNLDP-DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG--QYLCNRQI 184 (377)
Q Consensus 108 ~~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~--~~~~g~~l 184 (377)
...+++|||+||++ ++++++|+++|++||.| .+++|+++ ||||||+|++.++|++|++.|++ ..|+|+.|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V-~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVI-SNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCE-EEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCE-EEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 34567999999999 99999999999999998 56777754 58999999999999999999985 45999999
Q ss_pred EEeeeeecC
Q 017119 185 TVSYAYKKD 193 (377)
Q Consensus 185 ~v~~a~~~~ 193 (377)
+|+|++...
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999998643
No 215
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.6e-18 Score=134.04 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=77.0
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
......++|||+||++++|+++|+++|++||.|.++.++.+..++.++|||||+|.+.++|++|++ +++..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 344567899999999999999999999999999987777777789999999999999999999999 9999999999999
Q ss_pred eecCcC
Q 017119 99 NKASQD 104 (377)
Q Consensus 99 ~~~~~~ 104 (377)
.++..+
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988654
No 216
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=7.6e-17 Score=122.06 Aligned_cols=84 Identities=21% Similarity=0.251 Sum_probs=74.2
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
...+....++|||+||+.++++++|+++|++||.|. ++++.+ .++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 12 ~~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (97)
T 2e5j_A 12 PGEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTL 86 (97)
T ss_dssp CCSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 334556688999999999999999999999999996 666543 578999999999999999999999999999999
Q ss_pred EEeecCcCc
Q 017119 97 RVNKASQDK 105 (377)
Q Consensus 97 ~v~~~~~~~ 105 (377)
+|+++..+.
T Consensus 87 ~V~~a~~~~ 95 (97)
T 2e5j_A 87 RVALARQQR 95 (97)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 999987654
No 217
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.3e-17 Score=126.89 Aligned_cols=84 Identities=21% Similarity=0.328 Sum_probs=76.0
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCC-eeecceee-cCCCCCCCcceEEEEeCCHHHHHHHHHHHc--CceecCeeeE
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGV-IVTNPKIM-RDPDTGNSRGFGFISYDSFEASDAAIEAMN--GQYLCNRQIT 185 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~-vv~~~~i~-~d~~~~~~kg~afV~f~~~~~A~~a~~~l~--~~~~~g~~l~ 185 (377)
..++|||+||++++++++|+++|++||. | ..++++ +++.++.++|||||+|.+.++|++|++.|+ +..++|+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v-~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGV-LDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTE-EEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCc-eEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 3568999999999999999999999998 7 567777 888899999999999999999999999996 5899999999
Q ss_pred EeeeeecCc
Q 017119 186 VSYAYKKDT 194 (377)
Q Consensus 186 v~~a~~~~~ 194 (377)
|+|++.+..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999986543
No 218
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=3.1e-17 Score=130.19 Aligned_cols=82 Identities=26% Similarity=0.400 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.++|++|+ .|++..|+|+.|+|+|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSI-NRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCE-EEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 35789999999999999999999999998 57899999899999999999999999999999 79999999999999999
Q ss_pred eecC
Q 017119 190 YKKD 193 (377)
Q Consensus 190 ~~~~ 193 (377)
+...
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 219
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.1e-17 Score=126.26 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=73.8
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||++++++++|+++|++||.| ..+++.+|.. +.++|||||+|.+.++|++|++ +++..++|+.|.|.|+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v-~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQV-LNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCE-EEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCE-EEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 34689999999999999999999999998 6789999977 9999999999999999999999 8999999999999998
Q ss_pred ee
Q 017119 190 YK 191 (377)
Q Consensus 190 ~~ 191 (377)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 75
No 220
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5e-17 Score=125.83 Aligned_cols=83 Identities=25% Similarity=0.438 Sum_probs=75.0
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+||++++++++|+++|++||.| ..+++.++. +.++|||||+|.+.++|++|++.|++..++|+.|+|
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 101 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKI-LDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 101 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCC-SCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCE-EEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44456799999999999999999999999998 577888874 358999999999999999999999999999999999
Q ss_pred eeeeec
Q 017119 187 SYAYKK 192 (377)
Q Consensus 187 ~~a~~~ 192 (377)
+|++.+
T Consensus 102 ~~a~~~ 107 (109)
T 2err_A 102 NNATAR 107 (109)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 999765
No 221
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3e-17 Score=128.14 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=76.2
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|+.||.|...++|++|+ ++.++|||||+|.+.++|++||+. ++..|+|+.|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 34467899999999999999999999999873467999997 899999999999999999999997 9999999999999
Q ss_pred eeeecC
Q 017119 188 YAYKKD 193 (377)
Q Consensus 188 ~a~~~~ 193 (377)
|+..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997664
No 222
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=127.49 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=72.0
Q ss_pred ccCCCCeEEEcCCCcC-CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhc--CcccCCcee
Q 017119 20 ERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN--MIKLYGKPI 96 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~-~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~--~~~~~g~~i 96 (377)
+...+++|||+||+++ +++++|+++|++||.|.+|+|++ ++|||||+|.+.++|++|++.|+ +..+.|+.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 4567899999999998 99999999999999999999964 47899999999999999999885 456999999
Q ss_pred EEeecCcCc
Q 017119 97 RVNKASQDK 105 (377)
Q Consensus 97 ~v~~~~~~~ 105 (377)
+|+++...+
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999987655
No 223
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=5.8e-17 Score=128.56 Aligned_cols=85 Identities=21% Similarity=0.366 Sum_probs=78.0
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..+++.+++ ++.++|||||+|.+.++|++|++.|++..++|+.|+|+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTL-KKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCC-SEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3445789999999999999999999999998 678999987 89999999999999999999999999999999999999
Q ss_pred eeeecCc
Q 017119 188 YAYKKDT 194 (377)
Q Consensus 188 ~a~~~~~ 194 (377)
|+.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9976543
No 224
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.3e-16 Score=123.56 Aligned_cols=83 Identities=18% Similarity=0.385 Sum_probs=73.4
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..++|.. ++.++|||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v-~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAI-RDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3446799999999999999999999999998 4567754 35689999999999999999999999999999999999
Q ss_pred eeeecCc
Q 017119 188 YAYKKDT 194 (377)
Q Consensus 188 ~a~~~~~ 194 (377)
|++.+..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4a_A 95 FPRSGRG 101 (109)
T ss_dssp CCCCCCC
T ss_pred EcccCCC
Confidence 9987653
No 225
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=7.5e-17 Score=127.79 Aligned_cols=83 Identities=17% Similarity=0.366 Sum_probs=74.8
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHH----HHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 20 ERNQDATAYVGNLDPQVTEELLW----ELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~----~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
+...+++|||+||+.++++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34567899999999999999876 6999999999998854 4778999999999999999999999999999999
Q ss_pred eEEeecCcCc
Q 017119 96 IRVNKASQDK 105 (377)
Q Consensus 96 i~v~~~~~~~ 105 (377)
|+|+++..+.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999998765
No 226
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=4.3e-17 Score=125.90 Aligned_cols=82 Identities=23% Similarity=0.166 Sum_probs=72.6
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcC-CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAG-PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G-~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
.....++|||+||++++++++|+++|++|| .|..+++..+ .++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999 8999998643 37899999999999999999999999999999999
Q ss_pred eecCcCc
Q 017119 99 NKASQDK 105 (377)
Q Consensus 99 ~~~~~~~ 105 (377)
+++....
T Consensus 100 ~~a~~~p 106 (111)
T 2jvr_A 100 ERDDNPP 106 (111)
T ss_dssp EESCC--
T ss_pred EECCCCC
Confidence 9987543
No 227
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6.9e-17 Score=123.49 Aligned_cols=88 Identities=30% Similarity=0.390 Sum_probs=78.7
Q ss_pred CCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 16 QHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 16 ~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
.........++|||+||+.++++++|+++|+.|+ .|+++.+..++.++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2fc8_A 7 GPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 83 (102)
T ss_dssp TTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3345567889999999999999999999999874 6778888888999999999999999999999999999999999
Q ss_pred eEEeecCcCcc
Q 017119 96 IRVNKASQDKK 106 (377)
Q Consensus 96 i~v~~~~~~~~ 106 (377)
|+|+++..+..
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 2fc8_A 84 VTLDWAKPKGE 94 (102)
T ss_dssp CEEEECCCCCS
T ss_pred EEEEEecCCCC
Confidence 99999987654
No 228
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-17 Score=129.18 Aligned_cols=86 Identities=27% Similarity=0.421 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|++||.| ..+.+..+..++.++|||||+|.+.++|++|++.|++..++|+.|+|+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v-~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEK-KGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHS-SSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCc-cceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 446799999999999999999999999998 3333333334889999999999999999999999999999999999999
Q ss_pred eeecCcC
Q 017119 189 AYKKDTK 195 (377)
Q Consensus 189 a~~~~~~ 195 (377)
++.+...
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876543
No 229
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=6.6e-17 Score=121.52 Aligned_cols=79 Identities=15% Similarity=0.229 Sum_probs=69.7
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCce--ecCeeeE
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY--LCNRQIT 185 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~--~~g~~l~ 185 (377)
...+++|||+||++++++++|+++|++||.| .++++++ .||||||+|++.++|.+|++.|++.. ++|+.|+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V-~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPI-SYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCE-EEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 3456799999999999999999999999998 5667764 47899999999999999999999775 7899999
Q ss_pred EeeeeecC
Q 017119 186 VSYAYKKD 193 (377)
Q Consensus 186 v~~a~~~~ 193 (377)
|+|++.+.
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99997654
No 230
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.8e-17 Score=118.81 Aligned_cols=79 Identities=28% Similarity=0.398 Sum_probs=72.3
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHh-cCcccCCcee
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL-NMIKLYGKPI 96 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l-~~~~~~g~~i 96 (377)
..+....++|||+||+.++++++|+++|++||.|.+|+++. ++|||||+|.+.++|++|++.| ++..+.|+.|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 34456789999999999999999999999999999999976 4689999999999999999998 9999999999
Q ss_pred EEeecC
Q 017119 97 RVNKAS 102 (377)
Q Consensus 97 ~v~~~~ 102 (377)
+|++++
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999873
No 231
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.1e-17 Score=123.38 Aligned_cols=80 Identities=16% Similarity=0.304 Sum_probs=69.5
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc--eecCeeeE
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ--YLCNRQIT 185 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~--~~~g~~l~ 185 (377)
....++|||+||++++++++|+++|++||.| ..++++++ ||||||+|++.++|++|++.|++. .++|+.|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V-~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTI-CYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCE-EEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456799999999999999999999999998 45676643 799999999999999999998754 58999999
Q ss_pred EeeeeecCc
Q 017119 186 VSYAYKKDT 194 (377)
Q Consensus 186 v~~a~~~~~ 194 (377)
|+|++.+..
T Consensus 85 V~~a~~~~~ 93 (104)
T 1wex_A 85 FNYSTSKRI 93 (104)
T ss_dssp EEECSSSSC
T ss_pred EEEccCccc
Confidence 999987654
No 232
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-17 Score=121.00 Aligned_cols=74 Identities=27% Similarity=0.395 Sum_probs=68.2
Q ss_pred CCeEEEcCCCcCC------CHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCc-ee
Q 017119 24 DATAYVGNLDPQV------TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK-PI 96 (377)
Q Consensus 24 ~~~l~v~nLp~~~------te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~-~i 96 (377)
+++|||+||+.++ ++++|+++|++||.|.+|++. +.++.++|||||+|.+.++|++|++.|++..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 779999999999999999987 34788999999999999999999999999999999 88
Q ss_pred EEe
Q 017119 97 RVN 99 (377)
Q Consensus 97 ~v~ 99 (377)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 233
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=6.8e-17 Score=134.77 Aligned_cols=86 Identities=23% Similarity=0.360 Sum_probs=79.9
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
.....++|||+||+.++++++|+++|++||.|..|.|+.+..++.++|||||+|.+.++|++|++.|++..|.|+.|+|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567789999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCcCc
Q 017119 100 KASQDK 105 (377)
Q Consensus 100 ~~~~~~ 105 (377)
++....
T Consensus 148 ~a~~~~ 153 (165)
T 1rk8_A 148 WCFVKG 153 (165)
T ss_dssp ESEECC
T ss_pred EecCCC
Confidence 987654
No 234
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=2.1e-17 Score=118.88 Aligned_cols=75 Identities=27% Similarity=0.428 Sum_probs=71.3
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
+|||+||+.++++++|+++|++||.|.+|++..+..++.++|||||+|.+.++|++|++ +++..+.|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999998889999999999999999999999 5889999999999864
No 235
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=3e-17 Score=144.09 Aligned_cols=82 Identities=22% Similarity=0.314 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcC--CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAG--PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G--~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
..++|||+||++++|+++|+++|++|| .|++|+|+.++.++.++|||||+|.+.++|++||+.|++..|.|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999998
Q ss_pred cCcC
Q 017119 101 ASQD 104 (377)
Q Consensus 101 ~~~~ 104 (377)
+...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8643
No 236
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=7.3e-17 Score=124.56 Aligned_cols=84 Identities=24% Similarity=0.356 Sum_probs=73.1
Q ss_pred CCCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 14 ~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
...........++|||+||+.++++++|+++|++||.|.+|+++ +|||||+|.+.++|++|++.|++..++|
T Consensus 21 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 21 MHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp -------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred cccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34455666788999999999999999999999999999999996 6899999999999999999999999999
Q ss_pred ceeEEeecCcCc
Q 017119 94 KPIRVNKASQDK 105 (377)
Q Consensus 94 ~~i~v~~~~~~~ 105 (377)
+.|+|.++....
T Consensus 93 ~~l~V~~a~~~~ 104 (108)
T 2jvo_A 93 QPLEVVYSKLPA 104 (108)
T ss_dssp EECEEESCSCCC
T ss_pred eEEEEEEecCCC
Confidence 999999987664
No 237
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=7.6e-18 Score=125.74 Aligned_cols=81 Identities=28% Similarity=0.495 Sum_probs=73.0
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeee
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 191 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~ 191 (377)
++|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.+ |++|++.|++..++|+.|+|+||..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKV-FNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCC-SEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCE-EEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 479999999999999999999999998 57899999999999999999999999 9999999999999999999999987
Q ss_pred cCc
Q 017119 192 KDT 194 (377)
Q Consensus 192 ~~~ 194 (377)
+..
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 643
No 238
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=123.52 Aligned_cols=82 Identities=23% Similarity=0.446 Sum_probs=75.5
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
.+....++|||+||+.++++++|+++|++||.|.+|+++.+ +|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 93 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 93 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34457889999999999999999999999999999999875 689999999999999999999999999999999
Q ss_pred eecCcCcc
Q 017119 99 NKASQDKK 106 (377)
Q Consensus 99 ~~~~~~~~ 106 (377)
.++.....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4g_A 94 YWGKESPD 101 (109)
T ss_dssp ECCCCCCS
T ss_pred EecCCCCC
Confidence 99987654
No 239
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=1.7e-16 Score=121.58 Aligned_cols=79 Identities=28% Similarity=0.344 Sum_probs=72.4
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
.....++|||+||+.++++++|+++|++||.|.+|+++ ++||||+|.+.++|++|++.|++..+.|+.|+|+
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34567999999999999999999999999999999985 4599999999999999999999999999999999
Q ss_pred ecCcCcc
Q 017119 100 KASQDKK 106 (377)
Q Consensus 100 ~~~~~~~ 106 (377)
++.....
T Consensus 79 ~a~~~~~ 85 (103)
T 2dgu_A 79 FAKPPDQ 85 (103)
T ss_dssp ECCCCCC
T ss_pred EcCCCcc
Confidence 9976653
No 240
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=119.16 Aligned_cols=81 Identities=28% Similarity=0.446 Sum_probs=74.0
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
.......++|||+||+.++++++|+++|++||.|.+|++++ +||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34556789999999999999999999999999999999963 4999999999999999999999999999999
Q ss_pred EeecCcCcc
Q 017119 98 VNKASQDKK 106 (377)
Q Consensus 98 v~~~~~~~~ 106 (377)
|+++.....
T Consensus 76 V~~a~~~~~ 84 (92)
T 2dgt_A 76 VQLSTSRLR 84 (92)
T ss_dssp EEESSCCCS
T ss_pred EEEccCCCC
Confidence 999987654
No 241
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=128.07 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=77.8
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCC---eEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCc
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGP---VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK 94 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~---i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~ 94 (377)
..+....++|||+||++++|+++|+++|+.||. |.+|+|+.++. +.++|||||+|.+.++|++|++ +++..++|+
T Consensus 5 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 5 EEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp CCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred cCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 345567889999999999999999999999988 89999999986 9999999999999999999999 999999999
Q ss_pred eeEEeecCcC
Q 017119 95 PIRVNKASQD 104 (377)
Q Consensus 95 ~i~v~~~~~~ 104 (377)
.|+|.++...
T Consensus 83 ~i~V~~a~~~ 92 (107)
T 2lmi_A 83 YVEVYEINNE 92 (107)
T ss_dssp CCCCEECCHH
T ss_pred EEEEEECCHH
Confidence 9999887643
No 242
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.5e-17 Score=128.82 Aligned_cols=89 Identities=27% Similarity=0.339 Sum_probs=75.5
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
......+++|||+||+.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 19 YNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CCCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred cCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 33445678999999999999999999999999984433322222678999999999999999999999999999999999
Q ss_pred EeecCcCcc
Q 017119 98 VNKASQDKK 106 (377)
Q Consensus 98 v~~~~~~~~ 106 (377)
|+++.....
T Consensus 99 v~~a~~~~~ 107 (115)
T 2cpx_A 99 IEFGKNKKQ 107 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEccCCCC
Confidence 999987654
No 243
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-16 Score=118.10 Aligned_cols=80 Identities=33% Similarity=0.460 Sum_probs=73.4
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
.+....++|||+||+.++++++|+++|++||.|.+|++++ +||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456789999999999999999999999999999999963 49999999999999999999999999999999
Q ss_pred eecCcCcc
Q 017119 99 NKASQDKK 106 (377)
Q Consensus 99 ~~~~~~~~ 106 (377)
+++.....
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99987653
No 244
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.1e-17 Score=123.57 Aligned_cols=76 Identities=25% Similarity=0.374 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
..+++|||+||+.++++++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|++..++|+.|+|+++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 356899999999999999999999999999999996 36799999999999999999999999999999999998
Q ss_pred Cc
Q 017119 102 SQ 103 (377)
Q Consensus 102 ~~ 103 (377)
..
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 245
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=129.82 Aligned_cols=81 Identities=37% Similarity=0.573 Sum_probs=75.5
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDI-TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCE-EEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCE-EEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456799999999999999999999999998 578999999999999999999999999999999999999999999999
Q ss_pred ee
Q 017119 188 YA 189 (377)
Q Consensus 188 ~a 189 (377)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 246
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=5.3e-17 Score=127.51 Aligned_cols=83 Identities=14% Similarity=0.181 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCe--eecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVI--VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~v--v~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
...++|||+||++++++++|+++|+.||.+ |..++|++++. ++++|||||+|.+.++|++||+ +++..|+|+.|+|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 446789999999999999999999999983 36889999876 9999999999999999999999 9999999999999
Q ss_pred eeeeecC
Q 017119 187 SYAYKKD 193 (377)
Q Consensus 187 ~~a~~~~ 193 (377)
.++..+.
T Consensus 93 ~~a~~~~ 99 (118)
T 2db1_A 93 FKSHRTE 99 (118)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9986543
No 247
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.5e-17 Score=124.94 Aligned_cols=81 Identities=17% Similarity=0.252 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|+.|| ++ .++|++|+ +++++|||||+|.+.++|++||+ +++..|+++.|+|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4457899999999999999999999999 43 78999997 89999999999999999999995 799999999999998
Q ss_pred eeecC
Q 017119 189 AYKKD 193 (377)
Q Consensus 189 a~~~~ 193 (377)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 248
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-17 Score=127.01 Aligned_cols=82 Identities=28% Similarity=0.434 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|++||.|. . +++.+..++.++|||||+|.+.++|++|++ |++..++|+.|+|+|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~-~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKN-D-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHH-T-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcc-e-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 3457899999999999999999999999984 4 677777889999999999999999999999 999999999999999
Q ss_pred eeecC
Q 017119 189 AYKKD 193 (377)
Q Consensus 189 a~~~~ 193 (377)
++.+.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 97654
No 249
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.69 E-value=2.5e-17 Score=144.51 Aligned_cols=83 Identities=22% Similarity=0.293 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcC--CeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFG--VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G--~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
..++|||+||++++++++|+++|++|| .| ..|+|++|+.++++||||||+|.+.++|++||+.|++..|+|+.|+|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v-~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDI-LEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCE-EEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcce-EEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 356899999999999999999999999 77 678999999999999999999999999999999999999999999999
Q ss_pred eeeecC
Q 017119 188 YAYKKD 193 (377)
Q Consensus 188 ~a~~~~ 193 (377)
|++.+.
T Consensus 146 ~a~~~~ 151 (229)
T 3q2s_C 146 PVNKQF 151 (229)
T ss_dssp ECCHHH
T ss_pred ECCCCc
Confidence 997654
No 250
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.2e-17 Score=130.03 Aligned_cols=83 Identities=23% Similarity=0.376 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|+.||.| ..+.++.+..++.++|||||+|.+.++|++||+ |++..|+|+.|+|.+
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v-~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIV-EDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBC-TTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCc-cceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 345799999999999999999999999998 455666666899999999999999999999999 999999999999999
Q ss_pred eeecC
Q 017119 189 AYKKD 193 (377)
Q Consensus 189 a~~~~ 193 (377)
+..+.
T Consensus 101 a~~~~ 105 (124)
T 1wel_A 101 ITKKG 105 (124)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97654
No 251
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=4.5e-16 Score=118.24 Aligned_cols=82 Identities=34% Similarity=0.382 Sum_probs=73.8
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhc--CCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCc
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQA--GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK 94 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~--G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~ 94 (377)
........++|||+||+.++++++|+++|++| |.|.+|++. +|||||+|.+.++|++|++.|++..+.|+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 8 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp CCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred cccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34445678899999999999999999999999 999999873 57999999999999999999999999999
Q ss_pred eeEEeecCcCcc
Q 017119 95 PIRVNKASQDKK 106 (377)
Q Consensus 95 ~i~v~~~~~~~~ 106 (377)
.|+|.++.....
T Consensus 80 ~l~v~~a~~~~~ 91 (99)
T 2cpd_A 80 PIEVTLAKPVDK 91 (99)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999987653
No 252
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=120.11 Aligned_cols=78 Identities=26% Similarity=0.420 Sum_probs=69.8
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcC-ceecCeeeEEee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG-QYLCNRQITVSY 188 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~-~~~~g~~l~v~~ 188 (377)
..++|||+||++++++++|+++|++||.++..+.+. ++|||||+|.+.++|++|++.|++ ..++|+.|+|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 457899999999999999999999999965665552 589999999999999999999999 999999999999
Q ss_pred eeecCc
Q 017119 189 AYKKDT 194 (377)
Q Consensus 189 a~~~~~ 194 (377)
++.+..
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 987654
No 253
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=7.7e-17 Score=125.13 Aligned_cols=78 Identities=21% Similarity=0.203 Sum_probs=71.7
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
.+.+++|||+||+.++++++|+++|++||.|.+|++.. +++||||+|.+.++|++|++.|++..+.|+.|+|.|
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34578999999999999999999999999999999864 578999999999999999999999999999999999
Q ss_pred cCcC
Q 017119 101 ASQD 104 (377)
Q Consensus 101 ~~~~ 104 (377)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 8654
No 254
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=8.9e-17 Score=123.53 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=73.6
Q ss_pred cCCCCeEEEcCCCCcC------CHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC
Q 017119 108 LDVGANLFIGNLDPDV------DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~------~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g 181 (377)
....++|||+||++.+ ++++|+++|++||.| ..+++. +.+|.++|||||+|.+.++|++|++.|++..++|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v-~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKI-TNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCE-EEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCE-EEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 3446789999999999 789999999999998 456666 4789999999999999999999999999999999
Q ss_pred e-eeEEeeeeecC
Q 017119 182 R-QITVSYAYKKD 193 (377)
Q Consensus 182 ~-~l~v~~a~~~~ 193 (377)
+ .|+|+|+....
T Consensus 89 ~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 89 QHTFRVNLFTDFD 101 (105)
T ss_dssp TCEEEEECSCCCC
T ss_pred CceEEEEEcchHh
Confidence 8 99999997543
No 255
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=2.4e-16 Score=119.21 Aligned_cols=80 Identities=20% Similarity=0.435 Sum_probs=71.4
Q ss_pred CccccCCCCeEEEcCCCc-CCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 17 HSAERNQDATAYVGNLDP-QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~-~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
.......+++|||+||+. ++++++|+++|++||.|.+|++ .+|||||+|.+.++|++|++.|++..++|+.
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 344556789999999998 9999999999999999999998 3789999999999999999999999999999
Q ss_pred eEEeecCcC
Q 017119 96 IRVNKASQD 104 (377)
Q Consensus 96 i~v~~~~~~ 104 (377)
|+|+++...
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999998764
No 256
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=4.5e-17 Score=117.08 Aligned_cols=75 Identities=25% Similarity=0.474 Sum_probs=70.5
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
+|||+||++++++++|+++|++||.| ..+++.+++.++.++|||||+|.+.++|++|++. ++..++|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEV-ESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCC-SEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 58999999999999999999999998 6788999999999999999999999999999995 889999999999875
No 257
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=4.3e-17 Score=128.35 Aligned_cols=80 Identities=20% Similarity=0.200 Sum_probs=72.6
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCe----EEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPV----VNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i----~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
....++|||+||++++|++||+++|++||.| .+|+|+.+. +++++|||||+|.+.++|++|++. ++..+.++.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 4678899999999999999999999999975 689999885 899999999999999999999995 8999999998
Q ss_pred EEeecC
Q 017119 97 RVNKAS 102 (377)
Q Consensus 97 ~v~~~~ 102 (377)
.|..+.
T Consensus 98 ~V~~a~ 103 (123)
T 2dha_A 98 ELFRST 103 (123)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 887764
No 258
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.68 E-value=4.3e-17 Score=128.64 Aligned_cols=85 Identities=27% Similarity=0.315 Sum_probs=75.7
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeE--EEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCc
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVV--NVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK 94 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~--~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~ 94 (377)
...+....++|||+||++++|+++|+++|++| .|. +|+|+.++. +.++|||||+|.+.++|++|++ +++..+.|+
T Consensus 35 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR 111 (126)
T 2hgm_A 35 NSADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHR 111 (126)
T ss_dssp CTTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTB
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCE
Confidence 34455678899999999999999999999999 677 899999986 9999999999999999999999 577999999
Q ss_pred eeEEeecCcC
Q 017119 95 PIRVNKASQD 104 (377)
Q Consensus 95 ~i~v~~~~~~ 104 (377)
.|+|..+..+
T Consensus 112 ~I~V~~a~~~ 121 (126)
T 2hgm_A 112 YIEVFKSSQE 121 (126)
T ss_dssp CCCCEEECHH
T ss_pred EEEEEECCHH
Confidence 9999887544
No 259
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.68 E-value=1.6e-16 Score=123.19 Aligned_cols=93 Identities=20% Similarity=0.453 Sum_probs=76.8
Q ss_pred CCceeEEeecCcCc--cccCCCCeEEEcCCCCc-CCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHH
Q 017119 92 YGKPIRVNKASQDK--KSLDVGANLFIGNLDPD-VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 168 (377)
Q Consensus 92 ~g~~i~v~~~~~~~--~~~~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~ 168 (377)
.|..|++..+.... ......++|||+||+++ +++++|+++|++||.| ..+++ ++|||||+|.+.++|+
T Consensus 6 ~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v-~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRV-AGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCC-SEEEE--------ETTEEEEECSSSHHHH
T ss_pred CCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCe-EEEEE--------eCCEEEEEECCHHHHH
Confidence 45666666554332 23334579999999999 9999999999999998 45555 5899999999999999
Q ss_pred HHHHHHcCceecCeeeEEeeeeecC
Q 017119 169 AAIEAMNGQYLCNRQITVSYAYKKD 193 (377)
Q Consensus 169 ~a~~~l~~~~~~g~~l~v~~a~~~~ 193 (377)
+|++.|++..++|+.|+|+|++...
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCC
T ss_pred HHHHHcCCCEECCeEEEEEECCCCC
Confidence 9999999999999999999997544
No 260
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.7e-16 Score=121.51 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC-----ee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN-----RQ 183 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g-----~~ 183 (377)
...++|||+||++++++++|+++|++||.| ..++|+.+ |||||+|.+.++|++||+.||+..|+| +.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDV-CYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCE-EEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-eEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 346799999999999999999999999998 56788765 899999999999999999999999999 99
Q ss_pred eEEeeeeecCc
Q 017119 184 ITVSYAYKKDT 194 (377)
Q Consensus 184 l~v~~a~~~~~ 194 (377)
|+|+|+..+..
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 99999987543
No 261
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=124.00 Aligned_cols=82 Identities=30% Similarity=0.565 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCcee--------c
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--------C 180 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~--------~ 180 (377)
...++|||+||++++++++|+++|+.||.| ..++|+++. ++.++|||||+|.+.++|++|++.||+..+ .
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQV-ISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCE-EEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 445799999999999999999999999998 678999997 899999999999999999999999999999 5
Q ss_pred CeeeEEeeeeec
Q 017119 181 NRQITVSYAYKK 192 (377)
Q Consensus 181 g~~l~v~~a~~~ 192 (377)
++.|+|+|+...
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 778999998743
No 262
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=9.6e-17 Score=121.48 Aligned_cols=83 Identities=25% Similarity=0.516 Sum_probs=75.2
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHH----HHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 20 ERNQDATAYVGNLDPQVTEELLW----ELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~----~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
+...+++|||+||+.++++++|+ ++|++||.|.+|++.. ++.++|||||+|.+.++|++|++.|++..+.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 34577899999999999999999 9999999999999874 4678899999999999999999999999999999
Q ss_pred eEEeecCcCc
Q 017119 96 IRVNKASQDK 105 (377)
Q Consensus 96 i~v~~~~~~~ 105 (377)
|+|.++....
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998765
No 263
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.6e-16 Score=117.24 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=72.9
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
.......++|||+|| ++++++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 9 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred cCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 344567899999996 89999999999999999999983 4778999999999999999999999999999999
Q ss_pred EeecCcCcc
Q 017119 98 VNKASQDKK 106 (377)
Q Consensus 98 v~~~~~~~~ 106 (377)
|.++.....
T Consensus 81 v~~a~~~~~ 89 (97)
T 1x5p_A 81 VNIARKQPM 89 (97)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCCC
Confidence 999977653
No 264
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=2.8e-16 Score=121.79 Aligned_cols=79 Identities=28% Similarity=0.461 Sum_probs=72.2
Q ss_pred ccCCCCeEEEcCCCcC-CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 20 ERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~-~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
....+++|||+||+.+ +++++|+++|++||.|.+|++ ++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3345689999999999 999999999999999999998 5789999999999999999999999999999999
Q ss_pred eecCcCcc
Q 017119 99 NKASQDKK 106 (377)
Q Consensus 99 ~~~~~~~~ 106 (377)
+++...+.
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99975543
No 265
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=6.5e-17 Score=124.73 Aligned_cols=84 Identities=19% Similarity=0.196 Sum_probs=75.7
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCe--eecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeE
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVI--VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~v--v~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 185 (377)
....++|||+||++++++++|+++|+.||.+ +..++|++|+. |+++|||||+|.+.++|++||+ +++..++|+.|+
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3456789999999999999999999999983 36789999977 9999999999999999999999 999999999999
Q ss_pred EeeeeecC
Q 017119 186 VSYAYKKD 193 (377)
Q Consensus 186 v~~a~~~~ 193 (377)
|.++..+.
T Consensus 86 V~~a~~~~ 93 (107)
T 2lmi_A 86 VYEINNED 93 (107)
T ss_dssp CEECCHHH
T ss_pred EEECCHHH
Confidence 99987643
No 266
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-16 Score=125.60 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCcCCHHHHH----HHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeee
Q 017119 109 DVGANLFIGNLDPDVDEKLLY----DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQI 184 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l 184 (377)
...++|||+||++.+++++|+ ++|++||.|+ ++.+. .++.+||||||+|.+.++|.+|++.||+..|+|+.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~-~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDIL-DIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEE-EEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeE-EEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 346789999999999999876 6999999984 45553 367899999999999999999999999999999999
Q ss_pred EEeeeeecCc
Q 017119 185 TVSYAYKKDT 194 (377)
Q Consensus 185 ~v~~a~~~~~ 194 (377)
+|+|++.+..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987643
No 267
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.9e-16 Score=120.77 Aligned_cols=79 Identities=19% Similarity=0.497 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|++||.| ..+++.++ +|||||+|.+.++|++|++.|++..++|+.|+|+|
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i-~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQI-MEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCE-EEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345799999999999999999999999998 56777765 79999999999999999999999999999999999
Q ss_pred eeecCc
Q 017119 189 AYKKDT 194 (377)
Q Consensus 189 a~~~~~ 194 (377)
++.+..
T Consensus 96 a~~~~~ 101 (109)
T 1x4g_A 96 GKESPD 101 (109)
T ss_dssp CCCCCS
T ss_pred cCCCCC
Confidence 987653
No 268
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.7e-16 Score=119.47 Aligned_cols=82 Identities=28% Similarity=0.530 Sum_probs=72.5
Q ss_pred cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeE
Q 017119 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185 (377)
Q Consensus 106 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 185 (377)
......++|||+||++++++++|+++|++||.| ..+++.++ +|||||+|.+.++|++|++.|++..++|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKA-GEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCC-SEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCe-EEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEE
Confidence 344556799999999999999999999999998 56677643 79999999999999999999999999999999
Q ss_pred EeeeeecCc
Q 017119 186 VSYAYKKDT 194 (377)
Q Consensus 186 v~~a~~~~~ 194 (377)
|+|++.+..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpj_A 83 VRFACHSAS 91 (99)
T ss_dssp EEESSCCSC
T ss_pred EEEcCCCCC
Confidence 999987643
No 269
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=2e-16 Score=120.66 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=68.6
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||++++++++|+++|++||.| ..+++. .++|||||+|.+.++|++|++.|++..++|+.|+|+|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i-~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFI-LDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCC-SEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCE-EEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 35789999999999999999999999998 466665 46899999999999999999999999999999999998
Q ss_pred ee
Q 017119 190 YK 191 (377)
Q Consensus 190 ~~ 191 (377)
+.
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 270
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.49 E-value=4.4e-18 Score=133.40 Aligned_cols=87 Identities=26% Similarity=0.358 Sum_probs=81.2
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEE--------EEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCccc
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVN--------VYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL 91 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~--------v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~ 91 (377)
+...+++|||+||+.++++++|+++|++||.|.+ |+++.++.++.++|||||+|.+.++|++|++.|++..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567899999999999999999999999999999 89999988899999999999999999999999999999
Q ss_pred CCceeEEeecCcCcc
Q 017119 92 YGKPIRVNKASQDKK 106 (377)
Q Consensus 92 ~g~~i~v~~~~~~~~ 106 (377)
.|+.|+|+++..+..
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999876653
No 271
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=1.5e-16 Score=122.78 Aligned_cols=78 Identities=19% Similarity=0.091 Sum_probs=68.4
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcC-CeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFG-VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G-~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
..++|||+||++++++++|+++|++|| .| ..+++.. +.++|||||+|.+.++|++|++.||+..++|+.|+|++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v-~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLET-TFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCC-SEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCee-EEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346899999999999999999999999 76 4555543 24899999999999999999999999999999999999
Q ss_pred eeec
Q 017119 189 AYKK 192 (377)
Q Consensus 189 a~~~ 192 (377)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8643
No 272
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=8e-17 Score=126.78 Aligned_cols=81 Identities=14% Similarity=0.102 Sum_probs=73.6
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCe---eecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVI---VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~v---v~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
...+|||+||++++++++|+++|++||.| +..++|++| .+|+++|||||+|.+.++|++||+. ++..|+|+.|+|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 45689999999999999999999999986 367889888 5899999999999999999999996 999999999999
Q ss_pred eeeeec
Q 017119 187 SYAYKK 192 (377)
Q Consensus 187 ~~a~~~ 192 (377)
..+..+
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988654
No 273
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.7e-16 Score=116.50 Aligned_cols=77 Identities=25% Similarity=0.424 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|++||.| ..+++. +|||||+|.+.++|++|++.|++..++|+.|+|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i-~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKV-LECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCE-EEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCE-EEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 345789999999999999999999999998 456665 68999999999999999999999999999999999
Q ss_pred eeecCc
Q 017119 189 AYKKDT 194 (377)
Q Consensus 189 a~~~~~ 194 (377)
++.+..
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 987654
No 274
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=121.51 Aligned_cols=77 Identities=21% Similarity=0.509 Sum_probs=70.9
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeee
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYK 191 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~ 191 (377)
++|||+||++++++++|+++|++||.| ..+++.++ ++|||||+|.+.++|++|++.|++..++|+.|+|+|++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPL-RTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCC-SEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 479999999999999999999999998 56787766 789999999999999999999999999999999999987
Q ss_pred cCc
Q 017119 192 KDT 194 (377)
Q Consensus 192 ~~~ 194 (377)
+..
T Consensus 75 ~~~ 77 (101)
T 2hvz_A 75 MPR 77 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 275
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.67 E-value=3.4e-17 Score=131.71 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=74.4
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
.......++|||+||++++||+||+++|++|| |.+|+|+.++. +.++|||||+|.+.++|++|+ .+++..+.++.|+
T Consensus 40 ~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~ 116 (139)
T 2hgn_A 40 TVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIE 116 (139)
T ss_dssp -----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEE
Confidence 34556788999999999999999999999999 77999999975 999999999999999999999 6899999999999
Q ss_pred EeecCcCc
Q 017119 98 VNKASQDK 105 (377)
Q Consensus 98 v~~~~~~~ 105 (377)
|..+....
T Consensus 117 V~~a~~~~ 124 (139)
T 2hgn_A 117 LFLNSTTG 124 (139)
T ss_dssp CEECCCSC
T ss_pred EEECCCCC
Confidence 98887654
No 276
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=4.9e-16 Score=118.94 Aligned_cols=79 Identities=32% Similarity=0.522 Sum_probs=70.2
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..+++. ++||||+|.+.++|++|++.|++..|+|+.|+|+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i-~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKL-ERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCE-EEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 3446789999999999999999999999998 456664 5699999999999999999999999999999999
Q ss_pred eeeecCcC
Q 017119 188 YAYKKDTK 195 (377)
Q Consensus 188 ~a~~~~~~ 195 (377)
|++.+...
T Consensus 79 ~a~~~~~~ 86 (103)
T 2dgu_A 79 FAKPPDQK 86 (103)
T ss_dssp ECCCCCCC
T ss_pred EcCCCccc
Confidence 99876543
No 277
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.2e-16 Score=118.61 Aligned_cols=77 Identities=29% Similarity=0.516 Sum_probs=69.4
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceec--CeeeEEe
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC--NRQITVS 187 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~--g~~l~v~ 187 (377)
..++|||+||++++++++|+++|++||.| ..+++..+ +|||||+|.+.++|++|++.|++..++ |+.|+|+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSI-RTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCE-EEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45789999999999999999999999998 55666543 789999999999999999999999999 9999999
Q ss_pred eeeecC
Q 017119 188 YAYKKD 193 (377)
Q Consensus 188 ~a~~~~ 193 (377)
|++.+.
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998764
No 278
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1e-16 Score=121.10 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=73.9
Q ss_pred ccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 18 SAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
.......++|||+||+.++++++|+++|++||.|..+ ..++.++|||||+|.+.++|++|++.|++..+.|+.|+
T Consensus 10 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3445577899999999999999999999999987766 23578999999999999999999999999999999999
Q ss_pred EeecCcCc
Q 017119 98 VNKASQDK 105 (377)
Q Consensus 98 v~~~~~~~ 105 (377)
|+++..+.
T Consensus 85 v~~a~~~~ 92 (96)
T 1fjc_A 85 LYYTGEKG 92 (96)
T ss_dssp EEECSSSC
T ss_pred EEEcCCCC
Confidence 99987654
No 279
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.66 E-value=4.3e-16 Score=127.79 Aligned_cols=84 Identities=32% Similarity=0.492 Sum_probs=76.7
Q ss_pred CccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 17 HSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 17 ~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
........++|||+||+.++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|++.|++..+.|+.|
T Consensus 66 ~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 66 HRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp CSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3445567899999999999999999999999999999999876 58999999999999999999999999999999
Q ss_pred EEeecCcCc
Q 017119 97 RVNKASQDK 105 (377)
Q Consensus 97 ~v~~~~~~~ 105 (377)
+|.++...+
T Consensus 141 ~v~~a~~~~ 149 (150)
T 2i2y_A 141 RVELSNGEK 149 (150)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 999987653
No 280
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=3e-16 Score=132.06 Aligned_cols=84 Identities=27% Similarity=0.337 Sum_probs=79.0
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
....++|||+||+.++++++|+++|++||.|.+|+|+.+. ++.++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cCcCc
Q 017119 101 ASQDK 105 (377)
Q Consensus 101 ~~~~~ 105 (377)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 87654
No 281
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=122.49 Aligned_cols=80 Identities=19% Similarity=0.295 Sum_probs=69.3
Q ss_pred cCCCCeEEEcCCCCc-CCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcC--ceecCeee
Q 017119 108 LDVGANLFIGNLDPD-VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG--QYLCNRQI 184 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~--~~~~g~~l 184 (377)
...+++|||+||+++ +++++|+++|++||.| .+++|++ +||||||+|++.++|++|++.|++ ..|+|+.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V-~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKI-KNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCC-SEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCE-EEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 345679999999998 9999999999999998 5667753 479999999999999999998864 56999999
Q ss_pred EEeeeeecCc
Q 017119 185 TVSYAYKKDT 194 (377)
Q Consensus 185 ~v~~a~~~~~ 194 (377)
+|+|+..+..
T Consensus 95 ~V~~a~~~~~ 104 (112)
T 1x4f_A 95 KVDLSEKYKK 104 (112)
T ss_dssp EEEEECSCSS
T ss_pred EEEECccccc
Confidence 9999976553
No 282
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.7e-16 Score=118.26 Aligned_cols=79 Identities=20% Similarity=0.374 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|++||.| . ++++. +.++|||||+|.+.++|++|++.|++..++|+.|+|+|
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v-~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 90 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSV-P-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCC-C-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCE-E-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 446799999999999999999999999998 3 45553 36899999999999999999999999999999999999
Q ss_pred eeecC
Q 017119 189 AYKKD 193 (377)
Q Consensus 189 a~~~~ 193 (377)
++.+.
T Consensus 91 a~~~~ 95 (97)
T 2e5j_A 91 ARQQR 95 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97654
No 283
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=4.1e-16 Score=117.72 Aligned_cols=81 Identities=26% Similarity=0.291 Sum_probs=72.7
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEE-EEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNV-YVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v-~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
.....++|||+||+.++++++|+++|++||.|.+| .++.++.+ +.|||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567899999999999999999999999999999 47776643 34999999999999999999999999999999
Q ss_pred eecCcC
Q 017119 99 NKASQD 104 (377)
Q Consensus 99 ~~~~~~ 104 (377)
+++..+
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 998766
No 284
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=5.5e-16 Score=126.85 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=72.5
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC--ceeEE
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG--KPIRV 98 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g--~~i~v 98 (377)
.+...+|||+||++++|+++|+++|++||.|++|++..+. .++||||+|.+.++|++|++.|++..|.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 3445679999999999999999999999999999986542 57899999999999999999999999966 99999
Q ss_pred eecCcCc
Q 017119 99 NKASQDK 105 (377)
Q Consensus 99 ~~~~~~~ 105 (377)
+|++.+.
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9998764
No 285
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2e-16 Score=119.45 Aligned_cols=78 Identities=21% Similarity=0.440 Sum_probs=70.6
Q ss_pred ccCCCCeEEEcCCCc-CCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 20 ERNQDATAYVGNLDP-QVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~-~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
+...+++|||+||+. ++++++|+++|++||.|.+|++. +|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456788999999998 99999999999999999999983 689999999999999999999999999999999
Q ss_pred eecCcCc
Q 017119 99 NKASQDK 105 (377)
Q Consensus 99 ~~~~~~~ 105 (377)
+++....
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9987654
No 286
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=6.5e-17 Score=123.65 Aligned_cols=82 Identities=28% Similarity=0.540 Sum_probs=76.1
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
...+++|||+||+.++++++|+++|++||.|.+|+++.+. ++.++|||||+|.+.++|++|++ ++..++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 4466899999999999999999999999999999999998 89999999999999999999999 89999999999988
Q ss_pred cCcCc
Q 017119 101 ASQDK 105 (377)
Q Consensus 101 ~~~~~ 105 (377)
+..+.
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 86543
No 287
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=3.5e-16 Score=128.04 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=70.0
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC--eeeEEeee
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN--RQITVSYA 189 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~a 189 (377)
.+|||+||++.+++++|+++|++||.| .+++++.+ ..+|||||+|.+.++|++|++.|+|..|+| +.|+|+|+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V-~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTV-LKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCE-EEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCE-EEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 469999999999999999999999998 56666543 257899999999999999999999999976 99999999
Q ss_pred eecCcCC
Q 017119 190 YKKDTKG 196 (377)
Q Consensus 190 ~~~~~~~ 196 (377)
+.+....
T Consensus 122 k~~~l~v 128 (164)
T 1sjr_A 122 KLTSLNV 128 (164)
T ss_dssp SSSSCCC
T ss_pred cCCcccc
Confidence 8775443
No 288
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.9e-16 Score=114.51 Aligned_cols=76 Identities=22% Similarity=0.394 Sum_probs=68.8
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHH-cCceecCeeeEE
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAM-NGQYLCNRQITV 186 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l-~~~~~~g~~l~v 186 (377)
....++|||+||++++++++|+++|++||.| ..+++.+ ++|||||+|.+.++|++|++.| ++..++|+.|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i-~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v 81 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEI-RTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNV 81 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCE-EEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCE-eEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEE
Confidence 3456799999999999999999999999998 5667765 3799999999999999999998 999999999999
Q ss_pred eeee
Q 017119 187 SYAY 190 (377)
Q Consensus 187 ~~a~ 190 (377)
+|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9984
No 289
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=1e-16 Score=117.00 Aligned_cols=73 Identities=23% Similarity=0.369 Sum_probs=66.0
Q ss_pred CeEEEcCCCCcC------CHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCe-ee
Q 017119 112 ANLFIGNLDPDV------DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNR-QI 184 (377)
Q Consensus 112 ~~l~V~nl~~~~------~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~-~l 184 (377)
++|||+||++++ ++++|+++|++||.| ..+++. +.+|.++|||||+|.+.++|++|++.||+..++|+ .|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i-~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKI-TNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCE-EEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCe-EEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 689999999999 679999999999998 456665 47899999999999999999999999999999999 88
Q ss_pred EEe
Q 017119 185 TVS 187 (377)
Q Consensus 185 ~v~ 187 (377)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 774
No 290
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.65 E-value=4.7e-16 Score=119.98 Aligned_cols=77 Identities=29% Similarity=0.527 Sum_probs=69.9
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..+++. +|||||+|.+.++|++|++.|++..++|+.|+|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPM-KEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCC-CEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCE-EEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 3456799999999999999999999999998 456665 7899999999999999999999999999999999
Q ss_pred eeeecC
Q 017119 188 YAYKKD 193 (377)
Q Consensus 188 ~a~~~~ 193 (377)
|++.+.
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 997754
No 291
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5.1e-16 Score=116.76 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=69.8
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
....++|||+||+.++++++|+++|++||.|.+| +.+..++. ||||+|.+.++|++|++ |++..++|+.|+|++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 4467899999999999999999999999999987 44444444 99999999999999999 999999999999998
Q ss_pred cCcCc
Q 017119 101 ASQDK 105 (377)
Q Consensus 101 ~~~~~ 105 (377)
+....
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 86554
No 292
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.8e-16 Score=114.45 Aligned_cols=78 Identities=19% Similarity=0.361 Sum_probs=69.6
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..+++. ++||||+|.+.++|++|++.|++..++|+.|+|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRV-IECDVV--------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCE-EEEEEC--------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCE-EEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999998 566765 3499999999999999999999999999999999
Q ss_pred eeeecCc
Q 017119 188 YAYKKDT 194 (377)
Q Consensus 188 ~a~~~~~ 194 (377)
|++.+..
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9987643
No 293
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=9.7e-16 Score=114.71 Aligned_cols=78 Identities=17% Similarity=0.382 Sum_probs=69.5
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..+++. ++||||+|.+.++|++|++.|++..++|+.|+|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v-~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPV-IECDIV--------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCC-CEEEEC--------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEE--------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3445789999999999999999999999998 566665 3499999999999999999999999999999999
Q ss_pred eeeecCc
Q 017119 188 YAYKKDT 194 (377)
Q Consensus 188 ~a~~~~~ 194 (377)
|++.+..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9987654
No 294
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.2e-16 Score=117.64 Aligned_cols=79 Identities=29% Similarity=0.420 Sum_probs=70.5
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCC-eEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcC-cccCCceeEE
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNM-IKLYGKPIRV 98 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~-~~~~g~~i~v 98 (377)
....++|||+||+.++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.|++ ..+.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 346789999999999999999999999999 6666652 478999999999999999999999 9999999999
Q ss_pred eecCcCcc
Q 017119 99 NKASQDKK 106 (377)
Q Consensus 99 ~~~~~~~~ 106 (377)
+++..+..
T Consensus 78 ~~a~~~~~ 85 (93)
T 2cqh_A 78 DYSVSKKL 85 (93)
T ss_dssp EECCCCCC
T ss_pred EEccCccc
Confidence 99977653
No 295
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=6.8e-16 Score=121.68 Aligned_cols=85 Identities=16% Similarity=0.274 Sum_probs=72.5
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcce-EEEEeCCHHHHHHHHHHHcCceecC--eeeEEee
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGF-GFISYDSFEASDAAIEAMNGQYLCN--RQITVSY 188 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~-afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~ 188 (377)
..|||+||++.+++++|+++|++||.| .+++++.+ .+|| |||+|.+.++|++|++.|||..|+| +.|+|+|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V-~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTV-LKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCE-EEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCE-EEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 368999999999999999999999998 45666543 3677 9999999999999999999999998 9999999
Q ss_pred eeecCcCCcCCCCh
Q 017119 189 AYKKDTKGERHGTP 202 (377)
Q Consensus 189 a~~~~~~~~~~~~~ 202 (377)
++.+....+.....
T Consensus 103 ak~~~l~v~~n~~~ 116 (130)
T 3zzy_A 103 SKLTSLNVKYNNDK 116 (130)
T ss_dssp CSCSSCCCCCCSSS
T ss_pred cCCCceeEEecCCC
Confidence 99876655544433
No 296
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-16 Score=121.35 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=69.3
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
.++|||+||++++++++|+++|++||.| ..+++.+ ++|||||+|.+.++|++|++.||+..++|+.|+|+|+.
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i-~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSL-GRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCE-EEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCE-EEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4689999999999999999999999998 4556542 67899999999999999999999999999999999998
Q ss_pred ecCc
Q 017119 191 KKDT 194 (377)
Q Consensus 191 ~~~~ 194 (377)
....
T Consensus 83 ~~~~ 86 (111)
T 1whx_A 83 IGVF 86 (111)
T ss_dssp TTTT
T ss_pred CCcc
Confidence 7544
No 297
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2e-16 Score=122.34 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=72.3
Q ss_pred CeEEEcCC----CcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC----H-HH---HHHHHH--HhcCcc
Q 017119 25 ATAYVGNL----DPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS----E-ED---ADYAIK--VLNMIK 90 (377)
Q Consensus 25 ~~l~v~nL----p~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~-e~---A~~A~~--~l~~~~ 90 (377)
.+|||+|| ++.+++++|+++|++||.|.+|+++.|+.|+.++|||||+|.+ . ++ |.+|++ .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 3 22 788888 689999
Q ss_pred cCCceeEEeecCcCc
Q 017119 91 LYGKPIRVNKASQDK 105 (377)
Q Consensus 91 ~~g~~i~v~~~~~~~ 105 (377)
|+|+.|+|+......
T Consensus 83 I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 83 IMGFKFEVILNKHSI 97 (136)
T ss_dssp ETTEEEEEEECCTTH
T ss_pred ecCcEEEEEECcccH
Confidence 999999998765443
No 298
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.6e-16 Score=120.45 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=70.9
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
..+|||+||++++++++|+++|+.| .| ..++|++|+. |+++|||||+|.+.++|++|| .+++..|+|+.|+|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v-~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RV-DAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CC-CEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-Ce-eEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999 65 6789998865 999999999999999999999 699999999999998886
Q ss_pred ec
Q 017119 191 KK 192 (377)
Q Consensus 191 ~~ 192 (377)
.+
T Consensus 92 ~~ 93 (109)
T 2dnn_A 92 ER 93 (109)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 299
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1e-17 Score=131.30 Aligned_cols=85 Identities=25% Similarity=0.446 Sum_probs=78.3
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeec--------ceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceec
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTN--------PKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~--------~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~ 180 (377)
...++|||+||++++++++|+++|++||.| .. ++++.|+.++.++|||||+|.+.++|++|++.|++..++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGII-KTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345789999999999999999999999998 45 789999899999999999999999999999999999999
Q ss_pred CeeeEEeeeeecCc
Q 017119 181 NRQITVSYAYKKDT 194 (377)
Q Consensus 181 g~~l~v~~a~~~~~ 194 (377)
|+.|+|+|++.+..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987653
No 300
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-15 Score=115.57 Aligned_cols=79 Identities=24% Similarity=0.405 Sum_probs=69.1
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhc--CCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeee
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAF--GVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQI 184 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~--G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l 184 (377)
.....++|||+||++++++++|+++|++| |.| ..+++ .+|||||+|.+.++|++|++.|++..++|+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v-~~~~~--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAV-ERVKK--------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCE-EEEEE--------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcce-EEEEE--------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 34456799999999999999999999999 777 34444 36799999999999999999999999999999
Q ss_pred EEeeeeecCc
Q 017119 185 TVSYAYKKDT 194 (377)
Q Consensus 185 ~v~~a~~~~~ 194 (377)
+|+|++.+..
T Consensus 82 ~v~~a~~~~~ 91 (99)
T 2cpd_A 82 EVTLAKPVDK 91 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEEECCCCCC
Confidence 9999987653
No 301
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=8.6e-16 Score=116.14 Aligned_cols=75 Identities=28% Similarity=0.505 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCC-cCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 109 DVGANLFIGNLDP-DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 109 ~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
...++|||+||++ ++++++|+++|++||.| ..+++ .+|||||+|.+.++|++|++.|++..++|+.|+|+
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v-~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHI-MQINI--------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCE-EEEEE--------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCE-EEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 4567999999998 99999999999999998 45555 37999999999999999999999999999999999
Q ss_pred eeeec
Q 017119 188 YAYKK 192 (377)
Q Consensus 188 ~a~~~ 192 (377)
|++.+
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99764
No 302
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=9.2e-16 Score=120.92 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=72.2
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccce-EEEEeCCHHHHHHHHHHhcCcccCC--ce
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGY-GFVEFRSEEDADYAIKVLNMIKLYG--KP 95 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~e~A~~A~~~l~~~~~~g--~~ 95 (377)
...+.--.|||+||++.+|+++|+++|++||.|.+|+++.+ .+|| |||+|.+.++|++|++.|++..|.| +.
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 33345557889999999999999999999999999998764 3577 9999999999999999999999998 99
Q ss_pred eEEeecCcCcc
Q 017119 96 IRVNKASQDKK 106 (377)
Q Consensus 96 i~v~~~~~~~~ 106 (377)
|+|++++....
T Consensus 98 LrI~~ak~~~l 108 (130)
T 3zzy_A 98 LRIDFSKLTSL 108 (130)
T ss_dssp EEEEECSCSSC
T ss_pred EEEEecCCCce
Confidence 99999987653
No 303
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=2.5e-16 Score=118.95 Aligned_cols=80 Identities=21% Similarity=0.353 Sum_probs=71.3
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+||++++++++|+++|++||.| ..+ ..++.++|||||+|.+.++|++|++.|++..++|+.|+|+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v-~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEI-RLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEE-CCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcE-EEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3445799999999999999999999999987 322 3678899999999999999999999999999999999999
Q ss_pred eeeecC
Q 017119 188 YAYKKD 193 (377)
Q Consensus 188 ~a~~~~ 193 (377)
|+..+.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997654
No 304
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.64 E-value=4.4e-16 Score=121.73 Aligned_cols=82 Identities=23% Similarity=0.446 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||++++++++|+++|+.||.| ..+.+.++ +.++|||||+|.+.++|.+|++.|++..++|+.|+|+|+
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPI-RQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45799999999999999999999999998 56777765 456999999999999999999999999999999999999
Q ss_pred eecCcC
Q 017119 190 YKKDTK 195 (377)
Q Consensus 190 ~~~~~~ 195 (377)
..+...
T Consensus 83 ~~~~~~ 88 (115)
T 3lqv_A 83 NANRAF 88 (115)
T ss_dssp CHHHHT
T ss_pred cCChhh
Confidence 875543
No 305
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.64 E-value=3.1e-16 Score=118.66 Aligned_cols=81 Identities=22% Similarity=0.440 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCcCCHHHHH----HHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeee
Q 017119 109 DVGANLFIGNLDPDVDEKLLY----DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQI 184 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l 184 (377)
...++|||+||++++++++|+ ++|++||.| ..+++.+ ++.++|||||+|.+.++|++|++.|++..++|+.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i-~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQI-LDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCE-EEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCE-EEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 345799999999999999999 999999998 4556653 57789999999999999999999999999999999
Q ss_pred EEeeeeecC
Q 017119 185 TVSYAYKKD 193 (377)
Q Consensus 185 ~v~~a~~~~ 193 (377)
+|+|++.+.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998764
No 306
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=2.4e-15 Score=118.09 Aligned_cols=93 Identities=19% Similarity=0.254 Sum_probs=74.5
Q ss_pred CCCCCCcCCCCcc---ccCCCC--eEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccce-EEEEeCCHHHHH
Q 017119 7 PGVGANLLGQHSA---ERNQDA--TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGY-GFVEFRSEEDAD 80 (377)
Q Consensus 7 ~~~~~~~~~~~~~---~~~~~~--~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~-afV~f~~~e~A~ 80 (377)
.||..+...+... ....++ .|||+||++.+++++|+++|++||.|.+|+|+.. .|| |||+|.+.++|+
T Consensus 3 ~~s~~q~i~~~~~~~~~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~ 76 (124)
T 2e5i_A 3 SGSSGKRITRPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQ 76 (124)
T ss_dssp CCCCCCCCCCSCCCCCCCCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHH
T ss_pred CCCCceeeeCCCCCCCCCCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHH
Confidence 4555555544211 112344 4679999999999999999999999999999652 276 999999999999
Q ss_pred HHHHHhcCcccCC--ceeEEeecCcCc
Q 017119 81 YAIKVLNMIKLYG--KPIRVNKASQDK 105 (377)
Q Consensus 81 ~A~~~l~~~~~~g--~~i~v~~~~~~~ 105 (377)
+|++.|++..|.| +.|+|+++....
T Consensus 77 ~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 77 KAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp HHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred HHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 9999999999987 689999997665
No 307
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.7e-16 Score=119.34 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=69.3
Q ss_pred ccCCCCeEEE--cCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCccc-----C
Q 017119 20 ERNQDATAYV--GNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL-----Y 92 (377)
Q Consensus 20 ~~~~~~~l~v--~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~-----~ 92 (377)
....+++||| +||++++++++|+++|++||.|.+|.+.. .||||||+|.+.++|++|++.||+..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3456789999 77999999999999999999999998854 378999999999999999999999987 5
Q ss_pred CceeEEeecCcC
Q 017119 93 GKPIRVNKASQD 104 (377)
Q Consensus 93 g~~i~v~~~~~~ 104 (377)
++.|+|.++...
T Consensus 95 g~~l~v~~a~~~ 106 (114)
T 2cq2_A 95 KITLYLNFVEKV 106 (114)
T ss_dssp EEECEEEEESCC
T ss_pred CcEEEEEecccC
Confidence 788888877543
No 308
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.64 E-value=4.4e-16 Score=115.56 Aligned_cols=77 Identities=21% Similarity=0.271 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
..+++|||+||+.++++++|+++|++| .|.+|++. .++|||||+|.+.++|++|++.|++..+.|+.|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 467899999999999999999999999 99999883 57899999999999999999999999999999999998
Q ss_pred CcCc
Q 017119 102 SQDK 105 (377)
Q Consensus 102 ~~~~ 105 (377)
..+.
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6654
No 309
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.64 E-value=2.8e-16 Score=120.06 Aligned_cols=80 Identities=25% Similarity=0.502 Sum_probs=74.2
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
.++|||+||++++++++|+++|++||.| ..+++.+++ ++.++|||||+|.+.++|++|++ ++..++|+.|.|.++.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i-~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSV-KEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCE-EEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCe-EEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4689999999999999999999999998 678999997 99999999999999999999999 9999999999999998
Q ss_pred ecCc
Q 017119 191 KKDT 194 (377)
Q Consensus 191 ~~~~ 194 (377)
.+..
T Consensus 85 ~~~~ 88 (102)
T 2xs2_A 85 RKQN 88 (102)
T ss_dssp ECC-
T ss_pred cCcc
Confidence 7653
No 310
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=6.9e-16 Score=120.53 Aligned_cols=76 Identities=30% Similarity=0.400 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce-----e
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP-----I 96 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~-----i 96 (377)
...++|||+||++++++++|+++|++||.|.+|+|+.+ |||||+|.+.++|++|++.|++..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 56789999999999999999999999999999999765 89999999999999999999999999998 6
Q ss_pred EEeecCcC
Q 017119 97 RVNKASQD 104 (377)
Q Consensus 97 ~v~~~~~~ 104 (377)
+|......
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 66655443
No 311
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.4e-15 Score=126.39 Aligned_cols=84 Identities=31% Similarity=0.487 Sum_probs=79.5
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
......++|||+||+.++++++|+++|++||.|.+++++.+..++.++|||||+|.+.++|++|++.|++..++|+.|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred eecC
Q 017119 99 NKAS 102 (377)
Q Consensus 99 ~~~~ 102 (377)
++++
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9985
No 312
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=6.4e-16 Score=116.68 Aligned_cols=78 Identities=27% Similarity=0.467 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCC-cCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 109 DVGANLFIGNLDP-DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 109 ~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
...++|||+||++ ++++++|+++|++||.| ..+++ ++|||||+|.+.++|++|++.|++..++|+.|+|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v-~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHI-MQINI--------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCC-CEEEE--------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCE-EEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4467899999998 99999999999999998 45565 37899999999999999999999999999999999
Q ss_pred eeeecCcC
Q 017119 188 YAYKKDTK 195 (377)
Q Consensus 188 ~a~~~~~~ 195 (377)
|++.+...
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99876543
No 313
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=2.8e-16 Score=123.93 Aligned_cols=82 Identities=20% Similarity=0.282 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeee-cceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVT-NPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~-~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
...++|||+||++++++++|+++|+.| .|+. .++|++|+. |+++|||||+|.+.++|++||+. ++..|+|+.|+|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 345789999999999999999999999 5532 789999976 99999999999999999999985 7799999999999
Q ss_pred eeeecC
Q 017119 188 YAYKKD 193 (377)
Q Consensus 188 ~a~~~~ 193 (377)
++..+.
T Consensus 117 ~a~~~e 122 (126)
T 2hgm_A 117 KSSQEE 122 (126)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 886543
No 314
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.63 E-value=5.7e-16 Score=130.36 Aligned_cols=83 Identities=22% Similarity=0.367 Sum_probs=76.9
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
...++|||+||++++++++|+++|++||.| ..+.|..+. ++.++|||||+|.+.++|++|++.|++..|+|+.|+|+|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I-~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTL-KKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCC-SEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345789999999999999999999999998 678898887 899999999999999999999999999999999999999
Q ss_pred eeecC
Q 017119 189 AYKKD 193 (377)
Q Consensus 189 a~~~~ 193 (377)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 97654
No 315
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=114.25 Aligned_cols=79 Identities=28% Similarity=0.475 Sum_probs=69.2
Q ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEE
Q 017119 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITV 186 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 186 (377)
.....++|||+|| ++++++|+++|++||.| ..+++. .++|||||+|.+.++|++|++.|++..++|+.|+|
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i-~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNI-IDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCE-EEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCE-EEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3445679999996 89999999999999998 455663 57899999999999999999999999999999999
Q ss_pred eeeeecCc
Q 017119 187 SYAYKKDT 194 (377)
Q Consensus 187 ~~a~~~~~ 194 (377)
+|+..+..
T Consensus 82 ~~a~~~~~ 89 (97)
T 1x5p_A 82 NIARKQPM 89 (97)
T ss_dssp ECCSSCCC
T ss_pred EECCCCCC
Confidence 99977654
No 316
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.63 E-value=2.6e-16 Score=128.03 Aligned_cols=85 Identities=24% Similarity=0.370 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecc--ee---ecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNP--KI---MRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ 183 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~--~i---~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~ 183 (377)
...++|||+||++++++++|+++|+.||.|. .+ ++ ++...++.++|||||+|.+.++|.+|++.||+..|+|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~-~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFS-SETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTT-CHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcc-cccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4457899999999999999999999999984 32 11 222357899999999999999999999999999999999
Q ss_pred eEEeeeeecCc
Q 017119 184 ITVSYAYKKDT 194 (377)
Q Consensus 184 l~v~~a~~~~~ 194 (377)
|+|+|++....
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999976543
No 317
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.1e-15 Score=110.23 Aligned_cols=76 Identities=22% Similarity=0.283 Sum_probs=67.3
Q ss_pred CCCe-EEEcCCCcCCCHHH----HHHHHHhc-CCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 23 QDAT-AYVGNLDPQVTEEL----LWELFVQA-GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 23 ~~~~-l~v~nLp~~~te~~----L~~~f~~~-G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
.+.| |||+||++++++++ |+++|++| |.|.+| ++ |+|||+|.+.++|++|++.|++..+.||.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 4556 99999999999998 55899999 599988 23 999999999999999999999999999999
Q ss_pred EEeecCcCcccc
Q 017119 97 RVNKASQDKKSL 108 (377)
Q Consensus 97 ~v~~~~~~~~~~ 108 (377)
+|+++..+.+..
T Consensus 77 ~v~~A~~~sd~~ 88 (96)
T 2diu_A 77 IVSFTPKNRELC 88 (96)
T ss_dssp EEESSCCSCCCC
T ss_pred EEEecCCCccee
Confidence 999998876433
No 318
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.63 E-value=4.2e-16 Score=120.54 Aligned_cols=81 Identities=15% Similarity=0.278 Sum_probs=72.3
Q ss_pred CeEEEcCC----CCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCC----H-HH---HHHHHH--HHcCc
Q 017119 112 ANLFIGNL----DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDS----F-EA---SDAAIE--AMNGQ 177 (377)
Q Consensus 112 ~~l~V~nl----~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~----~-~~---A~~a~~--~l~~~ 177 (377)
.+|||+|| ++.+++++|+++|+.||.| .++.++.|+.||.++|||||+|.+ . ++ |.+|++ .|++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV-~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEI-SHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCC-SEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCe-EEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 57999999 9999999999999999998 688999999999999999999996 3 32 899988 78999
Q ss_pred eecCeeeEEeeeeecC
Q 017119 178 YLCNRQITVSYAYKKD 193 (377)
Q Consensus 178 ~~~g~~l~v~~a~~~~ 193 (377)
.|+|+.|+|++.....
T Consensus 82 ~I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSI 97 (136)
T ss_dssp EETTEEEEEEECCTTH
T ss_pred eecCcEEEEEECcccH
Confidence 9999999999876543
No 319
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5e-16 Score=121.16 Aligned_cols=79 Identities=24% Similarity=0.366 Sum_probs=70.2
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCC---CCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVT---NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~---~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
....++|||+||+.++++++|+++|++||.|. +.++.+..+ +.++|||||+|.+.++|++|++.|+ .++|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 35678999999999999999999999999999 888888776 6899999999999999999999884 47888888
Q ss_pred EeecC
Q 017119 98 VNKAS 102 (377)
Q Consensus 98 v~~~~ 102 (377)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 87544
No 320
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=117.23 Aligned_cols=78 Identities=18% Similarity=0.313 Sum_probs=67.6
Q ss_pred CCCCeEEE--cCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCcee-----cC
Q 017119 109 DVGANLFI--GNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL-----CN 181 (377)
Q Consensus 109 ~~~~~l~V--~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~-----~g 181 (377)
...++||| +||++++++++|+++|++||.| ..+.+.. .||||||+|.+.++|++|++.||++.+ .|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v-~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLV-DALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCE-EEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCe-EEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 34578999 7799999999999999999988 5555543 379999999999999999999999998 68
Q ss_pred eeeEEeeeeecC
Q 017119 182 RQITVSYAYKKD 193 (377)
Q Consensus 182 ~~l~v~~a~~~~ 193 (377)
+.|.|.|+....
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 899999987543
No 321
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=1.4e-15 Score=132.31 Aligned_cols=83 Identities=27% Similarity=0.538 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||++++++++|+++|++||.| .+++|++|+.+++++|||||+|.+.++|++|++.+++..+.|+.|++.++
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPI-LSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCE-EEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 45689999999999999999999999998 67899999999999999999999999999999999999999999999998
Q ss_pred eecC
Q 017119 190 YKKD 193 (377)
Q Consensus 190 ~~~~ 193 (377)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 6543
No 322
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=2.6e-16 Score=128.00 Aligned_cols=86 Identities=24% Similarity=0.274 Sum_probs=73.8
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEE--E---eccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCc
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVY--V---PKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK 94 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~--i---~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~ 94 (377)
....+++|||+||+.++|+++|+++|++||.|..|. + +....++.++|||||+|.+.++|++|++.|++..+.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 345778999999999999999999999999987741 1 11123588999999999999999999999999999999
Q ss_pred eeEEeecCcCc
Q 017119 95 PIRVNKASQDK 105 (377)
Q Consensus 95 ~i~v~~~~~~~ 105 (377)
.|+|.++....
T Consensus 121 ~l~V~~a~~~~ 131 (143)
T 3egn_A 121 PMVVQFARSAR 131 (143)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997654
No 323
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.1e-15 Score=113.36 Aligned_cols=78 Identities=22% Similarity=0.338 Sum_probs=68.5
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||++++++++|+++|++||.|. .+ +.++.++. ||||+|.+.++|++|++ |++..|+|+.|+|+++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~-~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVA-SV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEE-EE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeE-EE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 346899999999999999999999999985 33 66666655 99999999999999999 9999999999999988
Q ss_pred eecCc
Q 017119 190 YKKDT 194 (377)
Q Consensus 190 ~~~~~ 194 (377)
..+..
T Consensus 80 ~~~~~ 84 (94)
T 2e5g_A 80 EQKEF 84 (94)
T ss_dssp CCSCC
T ss_pred CcCCC
Confidence 76543
No 324
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.61 E-value=2.2e-15 Score=131.07 Aligned_cols=85 Identities=24% Similarity=0.464 Sum_probs=80.7
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
....++|||+||+.++++++|+++|++||.|.+|+++.+..++.++|||||+|.+.++|++|++.|++..++|+.|+|.+
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCcCc
Q 017119 101 ASQDK 105 (377)
Q Consensus 101 ~~~~~ 105 (377)
+....
T Consensus 202 a~~~~ 206 (216)
T 2qfj_A 202 AVTPP 206 (216)
T ss_dssp CSSCS
T ss_pred ecCCC
Confidence 87764
No 325
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.61 E-value=2.4e-15 Score=126.03 Aligned_cols=82 Identities=29% Similarity=0.423 Sum_probs=77.8
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
....++|||+||+.++++++|+++|++||.|.+|++..+..++.++|||||+|.+.++|++|++.|++..++|+.|+|++
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34578999999999999999999999999999999999988899999999999999999999999999999999999998
Q ss_pred cC
Q 017119 101 AS 102 (377)
Q Consensus 101 ~~ 102 (377)
+.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 326
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=114.23 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecc-eeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNP-KIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~-~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
..++|||+||++++++++|+++|++||.| ..+ .++.++.++. |||+|.+.++|++|++.|++..++|+.|+|+|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v-~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVV-ESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCE-EEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCe-EEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999998 466 4777755433 99999999999999999999999999999999
Q ss_pred eeecC
Q 017119 189 AYKKD 193 (377)
Q Consensus 189 a~~~~ 193 (377)
+..++
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98763
No 327
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=2.2e-15 Score=144.42 Aligned_cols=85 Identities=22% Similarity=0.330 Sum_probs=79.9
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
....++|||+||+.++|+++|.++|.+||.|+.|.|+.+..++.++|||||+|.+.++|++||+.||++.|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCcCc
Q 017119 101 ASQDK 105 (377)
Q Consensus 101 ~~~~~ 105 (377)
+....
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 87543
No 328
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=1.7e-15 Score=112.34 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=68.3
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||++++++++|+++|++| .| ..+++. .++|||||+|.+.++|++|++.|++..++|+.|+|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v-~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DL-KYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CC-CCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-Ce-EEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 35789999999999999999999999 76 566663 67999999999999999999999999999999999999
Q ss_pred eecC
Q 017119 190 YKKD 193 (377)
Q Consensus 190 ~~~~ 193 (377)
..+.
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 6654
No 329
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=2.9e-15 Score=111.28 Aligned_cols=80 Identities=24% Similarity=0.469 Sum_probs=62.6
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
.......+|||+||++++||++|+++|++||.|.+|+++.+ +||||||+|.+.++|+++.. ..+.+.|+.|.|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~--~~~~~~g~~v~v 78 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG--EDLIIKGISVHI 78 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT--CEEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC--CCcccCCEEEEE
Confidence 34567889999999999999999999999999999999874 78999999999999984321 233456999999
Q ss_pred eecCcCc
Q 017119 99 NKASQDK 105 (377)
Q Consensus 99 ~~~~~~~ 105 (377)
.++..+.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9987654
No 330
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=3.3e-15 Score=124.28 Aligned_cols=82 Identities=32% Similarity=0.529 Sum_probs=77.3
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
+++|||+||++++++++|+++|+.||.| ..+++.+++.++.++|||||+|.+.++|++|++.|++..++|+.|+|.|+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i-~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEI-ESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCE-EEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCe-EEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 4789999999999999999999999998 678999998899999999999999999999999999999999999999997
Q ss_pred ecC
Q 017119 191 KKD 193 (377)
Q Consensus 191 ~~~ 193 (377)
.+.
T Consensus 81 ~~~ 83 (167)
T 1fxl_A 81 PSS 83 (167)
T ss_dssp CCC
T ss_pred CCc
Confidence 654
No 331
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5e-15 Score=108.29 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=63.4
Q ss_pred eEEEcCCCCcCCHHH----HHHHHhhcC-CeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 113 NLFIGNLDPDVDEKL----LYDTFSAFG-VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~----l~~~f~~~G-~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
.|||+||++++++++ |+++|++|| .|+. | ++ |+|||+|.+.++|++|++.|++..+.||.|+|+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~-V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLS-I-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEE-C-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEE-E-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 399999999999988 558999995 8853 2 23 999999999999999999999999999999999
Q ss_pred eeeecCcC
Q 017119 188 YAYKKDTK 195 (377)
Q Consensus 188 ~a~~~~~~ 195 (377)
||+.+...
T Consensus 80 ~A~~~sd~ 87 (96)
T 2diu_A 80 FTPKNREL 87 (96)
T ss_dssp SSCCSCCC
T ss_pred ecCCCcce
Confidence 99887653
No 332
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=4.4e-15 Score=116.53 Aligned_cols=79 Identities=20% Similarity=0.297 Sum_probs=67.7
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcce-EEEEeCCHHHHHHHHHHHcCceecC--eeeEEeee
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGF-GFISYDSFEASDAAIEAMNGQYLCN--RQITVSYA 189 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~-afV~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~a 189 (377)
.|||+||++.+++++|+++|++||.| .+++++.. .|| |||+|.+.++|.+|++.|||..|+| +.|+|+|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V-~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKV-QRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCE-EEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCE-EEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 47899999999999999999999998 45666542 276 9999999999999999999999987 68999999
Q ss_pred eecCcCCcC
Q 017119 190 YKKDTKGER 198 (377)
Q Consensus 190 ~~~~~~~~~ 198 (377)
+.+......
T Consensus 100 k~~~l~v~~ 108 (124)
T 2e5i_A 100 RPTRLNVIR 108 (124)
T ss_dssp SCSCCCCSS
T ss_pred cCCcceeec
Confidence 877654333
No 333
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=2.4e-15 Score=111.28 Aligned_cols=72 Identities=29% Similarity=0.617 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhc----C-------CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQA----G-------PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~----G-------~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~ 90 (377)
+..++|||+||+.++++++|+++|++| | .|.++++..+ +|||||+|.+.++|++|+ .|++..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 467899999999999999999999999 8 8999998653 789999999999999999 899999
Q ss_pred cCCceeEEee
Q 017119 91 LYGKPIRVNK 100 (377)
Q Consensus 91 ~~g~~i~v~~ 100 (377)
+.|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 334
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.59 E-value=4.7e-15 Score=127.16 Aligned_cols=85 Identities=28% Similarity=0.423 Sum_probs=80.6
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
....++|||+||+.++++++|+++|++||.|.+|++..+..++.++|||||+|.+.++|++|++.|++..++|+.|+|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 36779999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCcCc
Q 017119 101 ASQDK 105 (377)
Q Consensus 101 ~~~~~ 105 (377)
+....
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 335
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=4.3e-15 Score=116.94 Aligned_cols=79 Identities=24% Similarity=0.322 Sum_probs=71.4
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
......++|||+|| ++++++|+++|++||.|.+|++. .++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34467889999996 79999999999999999999985 47799999999999999999999999999999999
Q ss_pred eecCcCc
Q 017119 99 NKASQDK 105 (377)
Q Consensus 99 ~~~~~~~ 105 (377)
.++....
T Consensus 106 ~~a~~~~ 112 (121)
T 2bz2_A 106 NIARKQP 112 (121)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9997664
No 336
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=1e-14 Score=111.53 Aligned_cols=84 Identities=18% Similarity=0.031 Sum_probs=74.1
Q ss_pred cCCCCeEEEcCCCc-----CCCHHHHHHHHHhcCCeEEEEEeccCCC-CCccceEEEEeCCHHHHHHHHHHhcCcccCCc
Q 017119 21 RNQDATAYVGNLDP-----QVTEELLWELFVQAGPVVNVYVPKDRVT-NLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK 94 (377)
Q Consensus 21 ~~~~~~l~v~nLp~-----~~te~~L~~~f~~~G~i~~v~i~~~~~~-~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~ 94 (377)
...+++|+|.||-. +.++++|+++|++||.|.+|+|+.+..+ +.++|||||+|.+.++|++|++.||+..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35688999999962 3478999999999999999999988643 67899999999999999999999999999999
Q ss_pred eeEEeecCcC
Q 017119 95 PIRVNKASQD 104 (377)
Q Consensus 95 ~i~v~~~~~~ 104 (377)
.|+|.++...
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999998754
No 337
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=4.9e-15 Score=116.62 Aligned_cols=78 Identities=28% Similarity=0.476 Sum_probs=68.8
Q ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 108 LDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
....++|||+|| ++++++|+++|++||.| ..+++. .++|||||+|.+.++|++|++.|++..++|+.|+|+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I-~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNI-IDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCC-SCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCE-EEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345679999995 69999999999999998 466664 578999999999999999999999999999999999
Q ss_pred eeeecCc
Q 017119 188 YAYKKDT 194 (377)
Q Consensus 188 ~a~~~~~ 194 (377)
|+..+..
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9987643
No 338
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=6.5e-15 Score=125.73 Aligned_cols=115 Identities=11% Similarity=0.147 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHh--cCcccCCceeEEeecCcCcc--------ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeeccee
Q 017119 75 SEEDADYAIKVL--NMIKLYGKPIRVNKASQDKK--------SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144 (377)
Q Consensus 75 ~~e~A~~A~~~l--~~~~~~g~~i~v~~~~~~~~--------~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i 144 (377)
+.+.+..|++.. ..+.+.+...++........ .....++|||+||++++++++|+++|++||.| ..+++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v-~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQV-LNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCE-EEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCE-EEEEE
Confidence 667777788765 45566666566655432211 11235789999999999999999999999998 57788
Q ss_pred ecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeec
Q 017119 145 MRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192 (377)
Q Consensus 145 ~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~ 192 (377)
.++. ++.++|||||+|.+.++|++|++.++ ..++|+.|+|.|+..-
T Consensus 142 ~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 142 RRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDDY 187 (193)
T ss_dssp EECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTTC
T ss_pred EECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHHH
Confidence 8885 58999999999999999999998654 5899999999987654
No 339
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.58 E-value=8.6e-15 Score=122.02 Aligned_cols=82 Identities=32% Similarity=0.496 Sum_probs=77.0
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC--ceeE
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG--KPIR 97 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g--~~i~ 97 (377)
+....++|||+||+.++++++|+++|++||.|.++++..+..++.++|||||+|.+.++|++|++.|++..+.| +.|+
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 44567899999999999999999999999999999999998889999999999999999999999999999987 9999
Q ss_pred Eeec
Q 017119 98 VNKA 101 (377)
Q Consensus 98 v~~~ 101 (377)
|+++
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 340
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.58 E-value=3.7e-15 Score=116.36 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=64.0
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||++++++++|+++|++||.| ..+.|+.+ |||||+|.+.++|++||+.||+..|+|+.|+|.|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v-~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDV-CYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCE-EEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCe-EEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35789999999999999999999999998 56677655 89999999999999999999999999999555554
Q ss_pred ee
Q 017119 190 YK 191 (377)
Q Consensus 190 ~~ 191 (377)
+.
T Consensus 87 ~v 88 (115)
T 3beg_B 87 RV 88 (115)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 341
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.4e-15 Score=116.40 Aligned_cols=78 Identities=21% Similarity=0.345 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCC---CCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeE
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDT---GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~---~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 185 (377)
...++|||+||++++++++|+++|++||.|. ++++.+..+ |.++|||||+|.+.++|++|++.|+ .++|+.+.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~--~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV--VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC--EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE--EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 3457899999999999999999999999984 677777777 7999999999999999999999984 47888887
Q ss_pred Eeeee
Q 017119 186 VSYAY 190 (377)
Q Consensus 186 v~~a~ 190 (377)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 76554
No 342
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.58 E-value=2.9e-15 Score=124.83 Aligned_cols=83 Identities=23% Similarity=0.482 Sum_probs=77.8
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
....++|||+||+.++++++|+++|++||.|.+|++..+..++.++|||||+|.+.++|++|++ +++..++|+.|+|.+
T Consensus 84 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~ 162 (167)
T 2cjk_A 84 QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKR 162 (167)
T ss_dssp HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEE
T ss_pred ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEee
Confidence 3456799999999999999999999999999999999998889999999999999999999998 899999999999999
Q ss_pred cCcC
Q 017119 101 ASQD 104 (377)
Q Consensus 101 ~~~~ 104 (377)
+..+
T Consensus 163 a~pk 166 (167)
T 2cjk_A 163 AEPR 166 (167)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8754
No 343
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.7e-15 Score=112.41 Aligned_cols=78 Identities=24% Similarity=0.475 Sum_probs=67.4
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeec
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~ 101 (377)
..+++|||+||+.++++++|+++|++||.|.+|+++.+ ++|||||+|.+.++|++|+. ..+.+.++.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 46799999999999999999999999999999999764 78999999999999987544 245668999999998
Q ss_pred CcCcc
Q 017119 102 SQDKK 106 (377)
Q Consensus 102 ~~~~~ 106 (377)
..+..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76653
No 344
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=9.8e-15 Score=111.63 Aligned_cols=83 Identities=14% Similarity=0.231 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCC-----cCCHHHHHHHHhhcCCeeecceeecCCCC-CCCcceEEEEeCCHHHHHHHHHHHcCceecCee
Q 017119 110 VGANLFIGNLDP-----DVDEKLLYDTFSAFGVIVTNPKIMRDPDT-GNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ 183 (377)
Q Consensus 110 ~~~~l~V~nl~~-----~~~~~~l~~~f~~~G~vv~~~~i~~d~~~-~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~ 183 (377)
.+++|+|.|+-. +.++++|+++|++||.| ..++|.+++.+ +.++|||||+|.+.++|.+|++.|||+.++|+.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V-~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKV-GKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCE-EEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCE-EEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 456899999863 23789999999999998 57788888654 689999999999999999999999999999999
Q ss_pred eEEeeeeecC
Q 017119 184 ITVSYAYKKD 193 (377)
Q Consensus 184 l~v~~a~~~~ 193 (377)
|+|+|+....
T Consensus 86 i~v~~a~~~~ 95 (105)
T 2pe8_A 86 VKACFYNLDK 95 (105)
T ss_dssp CEEEECCHHH
T ss_pred EEEEEcCHHH
Confidence 9999997643
No 345
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.57 E-value=8e-15 Score=108.86 Aligned_cols=76 Identities=21% Similarity=0.406 Sum_probs=60.8
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCcee--cCeeeEE
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYL--CNRQITV 186 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v 186 (377)
....+|||+||++++++++|+++|++||.| .+++++++ +||||||+|++.++|++ +++..+ +|+.|.|
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i-~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEV-VDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCE-EEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCE-EEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 345789999999999999999999999998 56777764 79999999999999983 455554 5899999
Q ss_pred eeeeecCc
Q 017119 187 SYAYKKDT 194 (377)
Q Consensus 187 ~~a~~~~~ 194 (377)
.++..+..
T Consensus 79 ~~a~~k~~ 86 (89)
T 3d2w_A 79 SNAEPKHN 86 (89)
T ss_dssp EECC----
T ss_pred EEcCCCCc
Confidence 99976543
No 346
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.57 E-value=8.3e-15 Score=125.38 Aligned_cols=85 Identities=21% Similarity=0.352 Sum_probs=75.6
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEee
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNK 100 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~ 100 (377)
....++|||+||+.++++++|+++|++||.|..|+++.+..++.++|||||+|.+.++|++|++. ++..++|+.|.|.+
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 34568999999999999999999999999999999999988899999999999999999999985 78999999999999
Q ss_pred cCcCcc
Q 017119 101 ASQDKK 106 (377)
Q Consensus 101 ~~~~~~ 106 (377)
+..+..
T Consensus 180 a~~k~~ 185 (196)
T 1l3k_A 180 ALSKQE 185 (196)
T ss_dssp CC----
T ss_pred cCChhH
Confidence 877653
No 347
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=6.1e-14 Score=127.21 Aligned_cols=82 Identities=22% Similarity=0.431 Sum_probs=73.0
Q ss_pred cCCCCeEEEcCCCCcCCHHHHH----HHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCee
Q 017119 108 LDVGANLFIGNLDPDVDEKLLY----DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ 183 (377)
Q Consensus 108 ~~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~ 183 (377)
...+++|||+||++++++++|+ ++|++||.| .++++.+ ++.+||||||+|.+.++|++|++.|++..|+|+.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i-~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQI-LDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCe-EEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 3456799999999999999966 899999998 4566664 6789999999999999999999999999999999
Q ss_pred eEEeeeeecC
Q 017119 184 ITVSYAYKKD 193 (377)
Q Consensus 184 l~v~~a~~~~ 193 (377)
|+|+|++.+.
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997654
No 348
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.55 E-value=1.3e-14 Score=125.26 Aligned_cols=78 Identities=18% Similarity=0.355 Sum_probs=70.7
Q ss_pred CCCeEEEcCCC-CcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEee
Q 017119 110 VGANLFIGNLD-PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSY 188 (377)
Q Consensus 110 ~~~~l~V~nl~-~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 188 (377)
.+++|||+||+ +.+++++|+++|++||.| .+++++++ ++|||||+|.+.++|++||+.||+..+.|+.|+|+|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v-~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNV-EKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCE-EEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCe-EEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 35789999999 899999999999999998 56788765 479999999999999999999999999999999999
Q ss_pred eeecC
Q 017119 189 AYKKD 193 (377)
Q Consensus 189 a~~~~ 193 (377)
++.+.
T Consensus 77 s~~~~ 81 (205)
T 3tyt_A 77 SKQPA 81 (205)
T ss_dssp CSCSC
T ss_pred ccCCc
Confidence 97554
No 349
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.55 E-value=1.5e-14 Score=121.26 Aligned_cols=81 Identities=22% Similarity=0.376 Sum_probs=74.2
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC---CceeE
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY---GKPIR 97 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~---g~~i~ 97 (377)
....++|||+||+.++|+++|+++|++||.|.+|++..+. ++.++|||||+|.+.++|++|++.|++..+. ++.|+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999999886 5889999999999999999999999998776 49999
Q ss_pred EeecC
Q 017119 98 VNKAS 102 (377)
Q Consensus 98 v~~~~ 102 (377)
|.+++
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99874
No 350
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.5e-15 Score=108.55 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=63.7
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
..++|||+||++++++++|+++|++||.| ..++++++ ++|||||+|.+.++|++|+.. ...++|+.|+|+|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i-~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDV-MDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCC-CEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCe-eEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEec
Confidence 35799999999999999999999999998 56677654 789999999999999764332 34558999999999
Q ss_pred eecCc
Q 017119 190 YKKDT 194 (377)
Q Consensus 190 ~~~~~ 194 (377)
..+..
T Consensus 76 ~~~~~ 80 (88)
T 1wf0_A 76 EPKHN 80 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
No 351
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.53 E-value=2.1e-14 Score=125.41 Aligned_cols=80 Identities=25% Similarity=0.433 Sum_probs=71.4
Q ss_pred ccCCCCeEEEcCCCcCC---------CHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc
Q 017119 20 ERNQDATAYVGNLDPQV---------TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~---------te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~ 90 (377)
....+++|||+||+.++ +|++|+++|++||.|++|+|+. ++|||||+|.+.++|++|++.|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 35678999999999998 7999999999999999999975 47999999999999999999999999
Q ss_pred c------------CCceeEEeecCcCc
Q 017119 91 L------------YGKPIRVNKASQDK 105 (377)
Q Consensus 91 ~------------~g~~i~v~~~~~~~ 105 (377)
+ .|+.|.|+|+..+.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 9 89999999998664
No 352
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=2.2e-14 Score=105.95 Aligned_cols=71 Identities=23% Similarity=0.499 Sum_probs=62.9
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhhc----C-------CeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCce
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSAF----G-------VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQY 178 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~~----G-------~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~ 178 (377)
..++|||+||++++++++|+++|++| | .| ..+++.++ +|||||+|.+.++|++|+ .|++..
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v-~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPV-LAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSE-EEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcc-eEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 35689999999999999999999999 7 55 45566543 899999999999999999 999999
Q ss_pred ecCeeeEEee
Q 017119 179 LCNRQITVSY 188 (377)
Q Consensus 179 ~~g~~l~v~~ 188 (377)
++|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999974
No 353
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.52 E-value=3e-14 Score=121.55 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecC
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS 102 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~ 102 (377)
..++|||+||+.++++++|+++|++||.|.+|++.++. ++.++|||||+|.+.++|++|++.+ +..+.|+.|+|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 45899999999999999999999999999999999886 4889999999999999999999855 458999999999876
Q ss_pred cC
Q 017119 103 QD 104 (377)
Q Consensus 103 ~~ 104 (377)
.-
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 43
No 354
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.6e-14 Score=108.32 Aligned_cols=87 Identities=21% Similarity=0.254 Sum_probs=73.3
Q ss_pred CCCccccCCCCeEEEcCCCcCC-----------CHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHH
Q 017119 15 GQHSAERNQDATAYVGNLDPQV-----------TEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAI 83 (377)
Q Consensus 15 ~~~~~~~~~~~~l~v~nLp~~~-----------te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~ 83 (377)
++.......+++|+|.||-... ++++|+++|++||.|.+|.| .++ .++|||||+|.+.++|++|+
T Consensus 6 ~~~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai 81 (112)
T 2dit_A 6 SGGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCI 81 (112)
T ss_dssp CSCCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHH
T ss_pred cCCCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHH
Confidence 3445566789999999994332 26899999999999999966 443 37999999999999999999
Q ss_pred HHhcCcccCCceeEEeecCcCc
Q 017119 84 KVLNMIKLYGKPIRVNKASQDK 105 (377)
Q Consensus 84 ~~l~~~~~~g~~i~v~~~~~~~ 105 (377)
+.|++..+.|+.|+|.++....
T Consensus 82 ~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 82 QTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp HHSTTCEETTEECEEEECCSCC
T ss_pred HHcCCCEECCcEEEEEEeCCCC
Confidence 9999999999999999987654
No 355
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.51 E-value=2.7e-14 Score=124.66 Aligned_cols=100 Identities=20% Similarity=0.309 Sum_probs=76.2
Q ss_pred cCcccCCceeEEeecCcC---ccccCCCCeEEEcCCCCcC---------CHHHHHHHHhhcCCeeecceeecCCCCCCCc
Q 017119 87 NMIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDV---------DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSR 154 (377)
Q Consensus 87 ~~~~~~g~~i~v~~~~~~---~~~~~~~~~l~V~nl~~~~---------~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~k 154 (377)
+...+.|+.....+.... .......++|||+||+..+ ++++|+++|++||.| .+++|+. +|
T Consensus 107 ~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I-~~v~v~~------~k 179 (240)
T 3u1l_A 107 EVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDI-DRIRYVE------SK 179 (240)
T ss_dssp SSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCE-EEEEEEG------GG
T ss_pred cCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCE-EEEEEEC------CC
Confidence 445556665433322211 1223456799999999998 799999999999998 5677764 48
Q ss_pred ceEEEEeCCHHHHHHHHHHHcCcee------------cCeeeEEeeeeecC
Q 017119 155 GFGFISYDSFEASDAAIEAMNGQYL------------CNRQITVSYAYKKD 193 (377)
Q Consensus 155 g~afV~f~~~~~A~~a~~~l~~~~~------------~g~~l~v~~a~~~~ 193 (377)
|||||+|.+.++|+.|++.|++..| +|+.|.|+||+...
T Consensus 180 G~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 180 NCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred CEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 9999999999999999999999999 89999999998654
No 356
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.50 E-value=4.4e-14 Score=118.63 Aligned_cols=80 Identities=23% Similarity=0.312 Sum_probs=72.4
Q ss_pred ccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 20 ERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 20 ~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
.....++|||+||+.++++++|+++|++||.|..+ ..++.++|||||+|.+.++|++|++.|++..+.|+.|+|+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988766 4468899999999999999999999999999999999999
Q ss_pred ecCcC
Q 017119 100 KASQD 104 (377)
Q Consensus 100 ~~~~~ 104 (377)
++..+
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 98754
No 357
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=2.1e-13 Score=119.88 Aligned_cols=81 Identities=19% Similarity=0.358 Sum_probs=73.0
Q ss_pred ccCCCCeEEEcCCCC-cCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeE
Q 017119 107 SLDVGANLFIGNLDP-DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185 (377)
Q Consensus 107 ~~~~~~~l~V~nl~~-~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 185 (377)
....+++|||+||++ ++++++|+++|+.||.| ..+++++++ +|||||+|.+.++|++|++.|++..++|+.|+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i-~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDV-QRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCE-EEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCe-EEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 344567999999999 99999999999999998 577887764 78999999999999999999999999999999
Q ss_pred EeeeeecC
Q 017119 186 VSYAYKKD 193 (377)
Q Consensus 186 v~~a~~~~ 193 (377)
|+|+..+.
T Consensus 104 v~~a~~~~ 111 (229)
T 2adc_A 104 ITLSKHQN 111 (229)
T ss_dssp EECCSCCC
T ss_pred EEEecCcc
Confidence 99998654
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=3.8e-13 Score=104.33 Aligned_cols=80 Identities=23% Similarity=0.252 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCcC-----------CHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 109 DVGANLFIGNLDPDV-----------DEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~-----------~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
..+++|+|.||-... ++++|+++|++||.| ..+.| .++ .++|||||+|.+.++|++|++.||+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v-~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQI-RKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCC-SEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCE-eEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 446789999994432 258999999999998 45554 443 37999999999999999999999999
Q ss_pred eecCeeeEEeeeeecC
Q 017119 178 YLCNRQITVSYAYKKD 193 (377)
Q Consensus 178 ~~~g~~l~v~~a~~~~ 193 (377)
.++|+.|+|+|+..+.
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999997654
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.45 E-value=2.9e-13 Score=103.50 Aligned_cols=84 Identities=19% Similarity=0.156 Sum_probs=72.1
Q ss_pred CCCCeEEEcCC--CcCCC--------HHHHHHHHHhcCCeEEEEEeccCCC--CCccceEEEEeCCHHHHHHHHHHhcCc
Q 017119 22 NQDATAYVGNL--DPQVT--------EELLWELFVQAGPVVNVYVPKDRVT--NLHQGYGFVEFRSEEDADYAIKVLNMI 89 (377)
Q Consensus 22 ~~~~~l~v~nL--p~~~t--------e~~L~~~f~~~G~i~~v~i~~~~~~--~~~~g~afV~f~~~e~A~~A~~~l~~~ 89 (377)
..+++|.|.|+ +.++. ++||++.|++||.|.+|+|.++..+ +.++|+|||+|.+.++|++|++.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35789999998 33333 4689999999999999999988754 367999999999999999999999999
Q ss_pred ccCCceeEEeecCcCc
Q 017119 90 KLYGKPIRVNKASQDK 105 (377)
Q Consensus 90 ~~~g~~i~v~~~~~~~ 105 (377)
.+.||.|+|.+.....
T Consensus 83 ~f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 83 KFANRVVVTKYCDPDS 98 (105)
T ss_dssp EETTEECEEEEECHHH
T ss_pred EeCCCEEEEEEeCHHH
Confidence 9999999999986543
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.44 E-value=3.2e-13 Score=103.21 Aligned_cols=82 Identities=20% Similarity=0.277 Sum_probs=68.7
Q ss_pred CCeEEEcCCCC--cC--------CHHHHHHHHhhcCCeeecceeecCCCC--CCCcceEEEEeCCHHHHHHHHHHHcCce
Q 017119 111 GANLFIGNLDP--DV--------DEKLLYDTFSAFGVIVTNPKIMRDPDT--GNSRGFGFISYDSFEASDAAIEAMNGQY 178 (377)
Q Consensus 111 ~~~l~V~nl~~--~~--------~~~~l~~~f~~~G~vv~~~~i~~d~~~--~~~kg~afV~f~~~~~A~~a~~~l~~~~ 178 (377)
+++|.|.|+-. .+ .++||+++|++||.| ..++|.+++.+ +.++||+||+|.+.++|.+|++.|||+.
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V-~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLV-KSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCE-EEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCE-EEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 45778888722 22 347899999999998 57788888765 4689999999999999999999999999
Q ss_pred ecCeeeEEeeeeecC
Q 017119 179 LCNRQITVSYAYKKD 193 (377)
Q Consensus 179 ~~g~~l~v~~a~~~~ 193 (377)
++||.|+|+|+....
T Consensus 84 f~GR~i~v~~~~~~~ 98 (105)
T 3v4m_A 84 FANRVVVTKYCDPDS 98 (105)
T ss_dssp ETTEECEEEEECHHH
T ss_pred eCCCEEEEEEeCHHH
Confidence 999999999987653
No 361
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.43 E-value=3e-13 Score=105.42 Aligned_cols=82 Identities=20% Similarity=0.144 Sum_probs=71.8
Q ss_pred CCCeEEEcCCC--c---CCCHHHHHHHHHhcCCeEEEEEeccCC----CCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 23 QDATAYVGNLD--P---QVTEELLWELFVQAGPVVNVYVPKDRV----TNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 23 ~~~~l~v~nLp--~---~~te~~L~~~f~~~G~i~~v~i~~~~~----~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
.+++|+|.|+- . +-.++||++.|++||.|.+|+|.++.. ++.++|++||+|.+.++|++|++.||+..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 68999999983 2 234789999999999999999998864 35678999999999999999999999999999
Q ss_pred ceeEEeecCcC
Q 017119 94 KPIRVNKASQD 104 (377)
Q Consensus 94 ~~i~v~~~~~~ 104 (377)
|.|+|.++...
T Consensus 99 R~i~v~~~~~~ 109 (118)
T 3ue2_A 99 RKVVAEVYDQE 109 (118)
T ss_dssp EECEEEEECHH
T ss_pred cEEEEEEcChH
Confidence 99999998654
No 362
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.43 E-value=2.9e-13 Score=116.09 Aligned_cols=77 Identities=19% Similarity=0.406 Sum_probs=70.6
Q ss_pred CCeEEEcCCCC-cCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeee
Q 017119 111 GANLFIGNLDP-DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYA 189 (377)
Q Consensus 111 ~~~l~V~nl~~-~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a 189 (377)
+++|||+||++ ++++++|+++|++||.| ..+++++++ +|||||+|.+.++|++|++.|++..++|+.|+|+|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i-~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDV-QRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCC-SEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCE-EEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 46899999999 99999999999999997 567787764 789999999999999999999999999999999999
Q ss_pred eecC
Q 017119 190 YKKD 193 (377)
Q Consensus 190 ~~~~ 193 (377)
..+.
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8654
No 363
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.42 E-value=8.5e-14 Score=106.28 Aligned_cols=72 Identities=11% Similarity=0.289 Sum_probs=61.8
Q ss_pred EcCCCCcCCHHHHHHHH------------hhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCee
Q 017119 116 IGNLDPDVDEKLLYDTF------------SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ 183 (377)
Q Consensus 116 V~nl~~~~~~~~l~~~f------------~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~ 183 (377)
+.+|++.+++++|+++| ++||.| ..++|.++. ++.++|||||+|.+.++|.+|++.|||+.++|+.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V-~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEV-EEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCE-EEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCce-EEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 55677777777666555 999998 577888875 4789999999999999999999999999999999
Q ss_pred eEEeee
Q 017119 184 ITVSYA 189 (377)
Q Consensus 184 l~v~~a 189 (377)
|+|+|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999986
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.42 E-value=9.9e-14 Score=105.91 Aligned_cols=72 Identities=28% Similarity=0.344 Sum_probs=63.3
Q ss_pred EcCCCcCCCHHHHHHHH------------HhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 29 VGNLDPQVTEELLWELF------------VQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 29 v~nLp~~~te~~L~~~f------------~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
+.||+.++++++|+++| ++||.|.+|+|+++.. +.++|||||+|.+.++|++|++.||+..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777777666 9999999999998764 7889999999999999999999999999999999
Q ss_pred EEeec
Q 017119 97 RVNKA 101 (377)
Q Consensus 97 ~v~~~ 101 (377)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 365
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=3.4e-13 Score=105.12 Aligned_cols=82 Identities=16% Similarity=0.261 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCC-----cCCHHHHHHHHhhcCCeeecceeecCCC----CCCCcceEEEEeCCHHHHHHHHHHHcCceec
Q 017119 110 VGANLFIGNLDP-----DVDEKLLYDTFSAFGVIVTNPKIMRDPD----TGNSRGFGFISYDSFEASDAAIEAMNGQYLC 180 (377)
Q Consensus 110 ~~~~l~V~nl~~-----~~~~~~l~~~f~~~G~vv~~~~i~~d~~----~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~ 180 (377)
.+++|+|.|+-. +-.++||+++|++||.| ..++|.+++. ++.++||+||+|.+.++|.+|++.|||+.++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V-~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAV-NRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCE-EEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCE-eEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 346788888732 12468999999999998 5778888764 4578899999999999999999999999999
Q ss_pred CeeeEEeeeeec
Q 017119 181 NRQITVSYAYKK 192 (377)
Q Consensus 181 g~~l~v~~a~~~ 192 (377)
||.|+|+|+...
T Consensus 98 GR~i~v~~~~~~ 109 (118)
T 3ue2_A 98 GRKVVAEVYDQE 109 (118)
T ss_dssp TEECEEEEECHH
T ss_pred CcEEEEEEcChH
Confidence 999999998654
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.41 E-value=7.6e-13 Score=121.73 Aligned_cols=109 Identities=16% Similarity=0.203 Sum_probs=80.2
Q ss_pred ccccCCCCeEEEcC--CCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC---
Q 017119 18 SAERNQDATAYVGN--LDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY--- 92 (377)
Q Consensus 18 ~~~~~~~~~l~v~n--Lp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~--- 92 (377)
......+++|||+| |++++||++|+++|++||.|++|++.. +||||||+|.+.++|++|++.||+..+.
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~ 85 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 85 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCcccccc
Confidence 33456788999999 588999999999999999999988743 5799999999999999999999998773
Q ss_pred Cc--eeEEeecCcCcccc-----CCCCeEEEcCCCCcCCHHHHHHHHhhc
Q 017119 93 GK--PIRVNKASQDKKSL-----DVGANLFIGNLDPDVDEKLLYDTFSAF 135 (377)
Q Consensus 93 g~--~i~v~~~~~~~~~~-----~~~~~l~V~nl~~~~~~~~l~~~f~~~ 135 (377)
|+ .|++++........ -...-.| ++.++++++=..+++..
T Consensus 86 g~~~~ly~~~~~~~~~~~~~~~~lp~Gl~~---~p~fis~~Ee~~Ll~~i 132 (345)
T 3tht_A 86 GQKITLYLNFVEKVQWKELRPQALPPGLMV---VEEIISSEEEKMLLESV 132 (345)
T ss_dssp SCEEECEEEECSSEEEEEEECCSCCTTEEE---ETTCSCHHHHHHHHTTC
T ss_pred CCceEEEEEEeecccccccccccCCCceEE---EcCcCCHHHHHHHHHhc
Confidence 34 67888875332111 0111223 34556666655666543
No 367
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.40 E-value=5.3e-13 Score=119.65 Aligned_cols=83 Identities=34% Similarity=0.390 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcC-cccC---CceeEE
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNM-IKLY---GKPIRV 98 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~-~~~~---g~~i~v 98 (377)
..++|||+||+.++|+++|+++|+.||.|.+|+++.+ .++.++|||||+|.+.++|.+|++.|++ ..+. ++.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 5679999999999999999999999999999999999 4889999999999999999999999954 3333 899999
Q ss_pred eecCcCcc
Q 017119 99 NKASQDKK 106 (377)
Q Consensus 99 ~~~~~~~~ 106 (377)
.++.....
T Consensus 174 ~~~~~~~~ 181 (261)
T 3sde_A 174 EPMEQFDD 181 (261)
T ss_dssp EECCCEES
T ss_pred eeccccCc
Confidence 99876543
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1e-11 Score=93.64 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=62.8
Q ss_pred CCeEEEcCCC-------cCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 24 DATAYVGNLD-------PQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 24 ~~~l~v~nLp-------~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
.++|.|.-.. .++++++|+++|++||.|.+|+|+ +.++|||||+|.+.++|++|++.+ ..+.++.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~--~~~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNE--VGLVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTC--CBCSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhc--CCCCCCeE
Confidence 5566666544 358999999999999999999997 357899999999999999999964 44679999
Q ss_pred EEeecCcCc
Q 017119 97 RVNKASQDK 105 (377)
Q Consensus 97 ~v~~~~~~~ 105 (377)
+|+|+....
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999987654
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.2e-11 Score=93.30 Aligned_cols=82 Identities=10% Similarity=0.237 Sum_probs=63.9
Q ss_pred CceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHH
Q 017119 93 GKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172 (377)
Q Consensus 93 g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~ 172 (377)
...|+|.|....... ...++++++|+++|++||.| .+++|. +.++|||||+|.+.++|++|++
T Consensus 10 ~~~~~v~w~~~~~~~-----------~~~~~te~~L~~~F~~~G~V-~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~ 72 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDE-----------SKGGYSKDVLLRLLQKYGEV-LNLVLS-----SKKPGTAVVEFATVKAAELAVQ 72 (100)
T ss_dssp SCEEEEECCCCSSCS-----------CCCSCCHHHHHHHHHTTSCE-EEEEEE-----SSSSSEEEEEESCHHHHHHHHH
T ss_pred cceEEEeeeccCccC-----------cCCCCCHHHHHHHHHhcCCE-EEEEEc-----cCCCCEEEEEECCHHHHHHHHH
Confidence 456777775433211 12568999999999999998 466665 3689999999999999999999
Q ss_pred HHcCceecCeeeEEeeeeecC
Q 017119 173 AMNGQYLCNRQITVSYAYKKD 193 (377)
Q Consensus 173 ~l~~~~~~g~~l~v~~a~~~~ 193 (377)
.+ ..+.|+.|+|+|++.+.
T Consensus 73 ~~--~~~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 73 NE--VGLVDNPLKISWLEGQP 91 (100)
T ss_dssp TC--CBCSSSBCEEECSSCCC
T ss_pred hc--CCCCCCeEEEEEccCCC
Confidence 74 44689999999997664
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.28 E-value=1.6e-11 Score=94.94 Aligned_cols=78 Identities=22% Similarity=0.172 Sum_probs=65.9
Q ss_pred CCCCeEEEcCCCcC----------CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCccc
Q 017119 22 NQDATAYVGNLDPQ----------VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL 91 (377)
Q Consensus 22 ~~~~~l~v~nLp~~----------~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~ 91 (377)
..+++|.|.|+=.. ..++||++.|++||.|.+|.|.++. .+||+||+|.+.++|++|++.||+..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 45788999987322 1245789999999999999996653 589999999999999999999999999
Q ss_pred CCceeEEeecCc
Q 017119 92 YGKPIRVNKASQ 103 (377)
Q Consensus 92 ~g~~i~v~~~~~ 103 (377)
+||.|+|+++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999998753
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.27 E-value=7.1e-12 Score=115.24 Aligned_cols=76 Identities=17% Similarity=0.315 Sum_probs=63.0
Q ss_pred cCCCCeEEEcC--CCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceec---Ce
Q 017119 108 LDVGANLFIGN--LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLC---NR 182 (377)
Q Consensus 108 ~~~~~~l~V~n--l~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~---g~ 182 (377)
...+++|||+| |++.+++++|+++|++||.| ..+++.. +||||||+|.+.++|++|++.|||+.+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V-~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLV-DALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCE-EEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCe-EEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 34457899999 58899999999999999998 4455432 5899999999999999999999999883 44
Q ss_pred --eeEEeeee
Q 017119 183 --QITVSYAY 190 (377)
Q Consensus 183 --~l~v~~a~ 190 (377)
.|.+.|+.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57777774
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.27 E-value=1.5e-11 Score=95.12 Aligned_cols=64 Identities=17% Similarity=0.331 Sum_probs=56.0
Q ss_pred HHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecC
Q 017119 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193 (377)
Q Consensus 125 ~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~ 193 (377)
++||+++|++||.| ..+.|.++. .+||+||+|.+.++|.+|++.|||+.++||.|+|+|+....
T Consensus 31 ~edl~~~f~kfG~V-~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~~ 94 (114)
T 3s6e_A 31 KDDVIEECNKHGGV-IHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLPT 94 (114)
T ss_dssp HHHHHHHHTTTTCC-SEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHHH
T ss_pred HHHHHHHHhccCCE-EEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHHH
Confidence 56899999999998 466775542 59999999999999999999999999999999999996553
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.9e-10 Score=89.00 Aligned_cols=82 Identities=17% Similarity=0.112 Sum_probs=70.8
Q ss_pred ccccCCCCeEEEcCCCcC-CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC-HHHHHHHHHHhc--CcccCC
Q 017119 18 SAERNQDATAYVGNLDPQ-VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS-EEDADYAIKVLN--MIKLYG 93 (377)
Q Consensus 18 ~~~~~~~~~l~v~nLp~~-~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~-~e~A~~A~~~l~--~~~~~g 93 (377)
+.+-.....|||+||+.+ +++++|+++|++||.|..|.+..+.. .|||+|.+ .++|++|++.++ +..|.+
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 445667889999999999 99999999999999999999987653 59999999 899999999884 678888
Q ss_pred ceeEEeecCcCc
Q 017119 94 KPIRVNKASQDK 105 (377)
Q Consensus 94 ~~i~v~~~~~~~ 105 (377)
..++++......
T Consensus 86 ~~~~~evL~Gee 97 (121)
T 1owx_A 86 KEVTWEVLEGEV 97 (121)
T ss_dssp SSEEEEECCHHH
T ss_pred cEEEEEECCCHH
Confidence 888887766543
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=2.8e-10 Score=82.39 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=61.1
Q ss_pred CCCeEEEcCCC----cCCCH----HHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCc
Q 017119 23 QDATAYVGNLD----PQVTE----ELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGK 94 (377)
Q Consensus 23 ~~~~l~v~nLp----~~~te----~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~ 94 (377)
...||+|.-++ .++.+ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++ |++..+.||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 34677877665 23333 5689999999999999998864 8999999999999999 999999999
Q ss_pred eeEEeecCcC
Q 017119 95 PIRVNKASQD 104 (377)
Q Consensus 95 ~i~v~~~~~~ 104 (377)
.|+|+.++.+
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999987654
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=1e-10 Score=90.50 Aligned_cols=82 Identities=18% Similarity=0.107 Sum_probs=69.5
Q ss_pred cccCCCCeEEEcCCCCc-CCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCC-HHHHHHHHHHHc--CceecC
Q 017119 106 KSLDVGANLFIGNLDPD-VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDS-FEASDAAIEAMN--GQYLCN 181 (377)
Q Consensus 106 ~~~~~~~~l~V~nl~~~-~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~-~~~A~~a~~~l~--~~~~~g 181 (377)
.....++.|||+||.++ +++++|+++|++||.| ..|.+.++.. .|||+|.+ .++|.+|++.|+ +..|+|
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V-~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEI-KWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCE-EEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCE-EEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 34566789999999999 9999999999999998 6788877754 49999999 899999999995 778899
Q ss_pred eeeEEeeeeecCc
Q 017119 182 RQITVSYAYKKDT 194 (377)
Q Consensus 182 ~~l~v~~a~~~~~ 194 (377)
..++++.......
T Consensus 86 ~~~~~evL~GeeE 98 (121)
T 1owx_A 86 KEVTWEVLEGEVE 98 (121)
T ss_dssp SSEEEEECCHHHH
T ss_pred cEEEEEECCCHHH
Confidence 8888887765443
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=7.8e-10 Score=80.07 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=50.8
Q ss_pred HHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeec
Q 017119 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKK 192 (377)
Q Consensus 126 ~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~ 192 (377)
.+|.+.|.+||.| ..++++.|+ +||+|.+.++|.+|++ |++..++||.|+|++++..
T Consensus 30 ~~L~~~F~~~G~V-i~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 30 DELLQQFASFGEV-ILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHHHTTCCE-EEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred HHHHHHHHhCCCe-EEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 6789999999988 466887763 8999999999999999 9999999999999998753
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.99 E-value=1.3e-08 Score=88.65 Aligned_cols=70 Identities=16% Similarity=0.269 Sum_probs=60.7
Q ss_pred CCHHHHHHHHhhcCCeeecceeecC----CCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeeeecC
Q 017119 123 VDEKLLYDTFSAFGVIVTNPKIMRD----PDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKD 193 (377)
Q Consensus 123 ~~~~~l~~~f~~~G~vv~~~~i~~d----~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~~~~ 193 (377)
..+++|++.|++||.| ..++|.++ +.++.++|++||+|.+.++|.+|++.|+|+.++||.|+++|....+
T Consensus 141 e~~~dl~~e~~~~G~v-~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAV-NRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp THHHHHHHHHTTTSCE-EEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHccCCe-EEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 3568999999999998 56777744 4456899999999999999999999999999999999999987543
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=8.8e-10 Score=80.14 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=60.2
Q ss_pred CCCeEEEcCCCcC-----CCH----HHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 23 QDATAYVGNLDPQ-----VTE----ELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 23 ~~~~l~v~nLp~~-----~te----~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
...||+|.-++.+ +-+ .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++ |++.++.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 5678999877532 222 4588999999999999998875 9999999999999999 99999999
Q ss_pred ceeEEeecC
Q 017119 94 KPIRVNKAS 102 (377)
Q Consensus 94 ~~i~v~~~~ 102 (377)
|.|+|+..+
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999998754
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=2.9e-09 Score=77.46 Aligned_cols=70 Identities=16% Similarity=0.289 Sum_probs=57.2
Q ss_pred CCeEEEcCCCC-----cCCH----HHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC
Q 017119 111 GANLFIGNLDP-----DVDE----KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN 181 (377)
Q Consensus 111 ~~~l~V~nl~~-----~~~~----~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g 181 (377)
..||+|..++. .+-+ .+|.+.|.+||.|+ .++|..|+ +||+|.+.++|.+||+ |++..++|
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi-lvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIV-LVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCS-EEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEE-EEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 45788877652 2222 56899999999874 67888774 9999999999999998 99999999
Q ss_pred eeeEEeeee
Q 017119 182 RQITVSYAY 190 (377)
Q Consensus 182 ~~l~v~~a~ 190 (377)
|.|+|++..
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999999753
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.86 E-value=6.3e-09 Score=90.59 Aligned_cols=70 Identities=21% Similarity=0.152 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHhcCCeEEEEEeccC----CCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCc
Q 017119 36 VTEELLWELFVQAGPVVNVYVPKDR----VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK 105 (377)
Q Consensus 36 ~te~~L~~~f~~~G~i~~v~i~~~~----~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 105 (377)
..+++|++.|++||.|.+++|.++. .++.++|++||+|.+.++|++|++.|++..+.||.|++.+.....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~ 214 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 214 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHH
Confidence 4677899999999999999998544 445899999999999999999999999999999999999986543
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.6e-07 Score=69.55 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=68.1
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhc-----CCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCce
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQA-----GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKP 95 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~ 95 (377)
.+..++|-|-||+..+++..|+.+++++ |.|..|.+..|. +-|+|+|.|..+|-+|.-.|++.+|.|+.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3467899999999999999999999999 999999998775 46999999999999999999999999999
Q ss_pred eEEeec
Q 017119 96 IRVNKA 101 (377)
Q Consensus 96 i~v~~~ 101 (377)
|+|...
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 999544
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.41 E-value=2e-06 Score=63.72 Aligned_cols=74 Identities=12% Similarity=0.112 Sum_probs=62.6
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhc-----CCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCee
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAF-----GVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQ 183 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~-----G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~ 183 (377)
+..++|-+-||++.+++..|+.+++.+ |.++ .+.+.-| -+-|+|+|.|..+|-+|.-.|+|.+|+|+.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~-KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIR-KILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCS-EEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCcccee-EEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 345689999999999999999999999 8874 4455444 235999999999999999999999999999
Q ss_pred eEEeee
Q 017119 184 ITVSYA 189 (377)
Q Consensus 184 l~v~~a 189 (377)
|++.-.
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 988744
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=5.6e-05 Score=55.58 Aligned_cols=89 Identities=26% Similarity=0.347 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhc-----CCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCcee
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQA-----GPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPI 96 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~-----G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i 96 (377)
...++|.|.||+.+++++.|.-+|+.- |.|.++.... +-|+|+|.+.+.|++.++ ...+.+++..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~-k~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLA-QADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHT-CSCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhc-CCcceecCeEE
Confidence 356899999999999999999999972 5788887733 468999999999999998 33778899999
Q ss_pred EEeecCcCccccCCCCeEEEcCCCCcCC
Q 017119 97 RVNKASQDKKSLDVGANLFIGNLDPDVD 124 (377)
Q Consensus 97 ~v~~~~~~~~~~~~~~~l~V~nl~~~~~ 124 (377)
.|.-.... ...+|++.+|+..++
T Consensus 77 sV~P~~~~-----~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPR-----APARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCC-----CCCCCCCCSCCCCCC
T ss_pred EEEcCCCC-----CcceEeeecCCCCCC
Confidence 98664332 345788999987764
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.90 E-value=2.3e-05 Score=57.92 Aligned_cols=74 Identities=15% Similarity=0.043 Sum_probs=62.8
Q ss_pred CCCeEEEcCCCcCC-C----HHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeE
Q 017119 23 QDATAYVGNLDPQV-T----EELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIR 97 (377)
Q Consensus 23 ~~~~l~v~nLp~~~-t----e~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~ 97 (377)
-.++|+|.||+.++ + .++++++|..|+.+......++- .-..|.|.+.++|.+|...|++..+.|+.++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 45789999998765 2 25789999999998888776643 3578999999999999999999999999999
Q ss_pred EeecC
Q 017119 98 VNKAS 102 (377)
Q Consensus 98 v~~~~ 102 (377)
|.++.
T Consensus 78 ~YFgq 82 (104)
T 1wey_A 78 LYFAQ 82 (104)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 98876
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.82 E-value=8.8e-05 Score=53.83 Aligned_cols=65 Identities=18% Similarity=0.276 Sum_probs=52.7
Q ss_pred CCCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 017119 14 LGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87 (377)
Q Consensus 14 ~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~ 87 (377)
..+.+.+...++.++| ++|.++.-.||.++|+.||.| .|+.+.|. .|||.|.+.+.|..|++.+.
T Consensus 6 l~g~d~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 6 SGGPDLQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSCCCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4445556667777788 999999999999999999954 56666653 79999999999999999653
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.79 E-value=5.8e-05 Score=55.77 Aligned_cols=74 Identities=11% Similarity=0.102 Sum_probs=59.4
Q ss_pred CCeEEEcCCCCcC-C----HHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeE
Q 017119 111 GANLFIGNLDPDV-D----EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185 (377)
Q Consensus 111 ~~~l~V~nl~~~~-~----~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 185 (377)
-++|+|.||+.++ . .+.++++|..|+.+++. ..++. -.-..|.|.+.++|.+|...|++..+.|+.++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF-~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTF-QYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEE-EEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcce-eecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 3689999998765 2 25779999999988543 33322 22478999999999999999999999999999
Q ss_pred Eeeeee
Q 017119 186 VSYAYK 191 (377)
Q Consensus 186 v~~a~~ 191 (377)
|-|+..
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999973
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.55 E-value=0.00036 Score=53.03 Aligned_cols=76 Identities=13% Similarity=0.088 Sum_probs=59.8
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCC-ceeE
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYG-KPIR 97 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g-~~i~ 97 (377)
.+....+.|.|-+++... ...|.++|++||.|.+... ....++..|+|.+..+|++||. .|+..+.+ ..|-
T Consensus 19 ~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~------~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIG 90 (119)
T 1wwh_A 19 EDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM------SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIG 90 (119)
T ss_dssp --CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE------CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECE
T ss_pred CCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc------CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEE
Confidence 345567899999998874 6788899999999998876 1234699999999999999999 78888774 6666
Q ss_pred EeecC
Q 017119 98 VNKAS 102 (377)
Q Consensus 98 v~~~~ 102 (377)
|....
T Consensus 91 V~p~~ 95 (119)
T 1wwh_A 91 VKPCI 95 (119)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 66643
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.43 E-value=0.00046 Score=50.08 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=56.2
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCC--CccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTN--LHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~--~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
.+|.|++||..+||+++.+.+..+..+....++..+.+. ..-..|||.|.+.+++....+.+++..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 579999999999999999999999887777776554332 233579999999999999999898876553
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.40 E-value=0.00073 Score=49.05 Aligned_cols=54 Identities=26% Similarity=0.368 Sum_probs=45.0
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHc
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~ 175 (377)
..++| +++..+...||.++|+.||.+ .|+.+.|- .|||.|.+.+.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv--~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI--QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC--CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE--EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34666 999999999999999999976 34665552 59999999999999999775
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.33 E-value=0.00069 Score=49.16 Aligned_cols=69 Identities=10% Similarity=0.157 Sum_probs=54.0
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCC--CcceEEEEeCCHHHHHHHHHHHcCceecC
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN--SRGFGFISYDSFEASDAAIEAMNGQYLCN 181 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~g 181 (377)
.+|.|++|+..+|++++++.++.+..+ ....++..+.... .-..|||.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~-d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEH-DYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCE-EEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccc-eEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 478999999999999999999988765 4445544433222 22349999999999999999999998753
No 391
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.12 E-value=0.0032 Score=46.26 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=56.4
Q ss_pred CCCeEEEcCCCCcCCHHHHHHHHhh----cCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeE
Q 017119 110 VGANLFIGNLDPDVDEKLLYDTFSA----FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQIT 185 (377)
Q Consensus 110 ~~~~l~V~nl~~~~~~~~l~~~f~~----~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 185 (377)
...+|.|.||+..+.++.|.-+|++ -|..|..+.... +-|+|+|.+.+.|++.+++ ....|++..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 3468999999999999999999987 333345444432 4589999999999999973 37788888888
Q ss_pred Eeeeeec
Q 017119 186 VSYAYKK 192 (377)
Q Consensus 186 v~~a~~~ 192 (377)
|.-....
T Consensus 78 V~P~~~~ 84 (104)
T 2dhx_A 78 LRPAPPR 84 (104)
T ss_dssp EEECCCC
T ss_pred EEcCCCC
Confidence 8654443
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.09 E-value=0.00047 Score=50.20 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=45.3
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~ 87 (377)
+.++| ++|.++.-.||.++|+.|| -..|+.+.|. .|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999 4466666653 79999999999999999764
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.02 E-value=0.00054 Score=52.80 Aligned_cols=79 Identities=11% Similarity=0.067 Sum_probs=55.2
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEecc-C-----------C-CC-CccceEEEEeCCHHHHHHHHHHhc
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKD-R-----------V-TN-LHQGYGFVEFRSEEDADYAIKVLN 87 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~-~-----------~-~~-~~~g~afV~f~~~e~A~~A~~~l~ 87 (377)
+.+..|.|-+.+.+ ....|.++|++||.|.+-.-..+ . . -. ...++..|+|.+..+|++|+. .|
T Consensus 5 ~~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 34567777788664 45678889999999876321111 0 0 00 135688999999999999999 88
Q ss_pred CcccCCceeEEeecC
Q 017119 88 MIKLYGKPIRVNKAS 102 (377)
Q Consensus 88 ~~~~~g~~i~v~~~~ 102 (377)
+..+.|..|-|...+
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999888887664
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.93 E-value=0.0037 Score=47.45 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=55.6
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecC-eeeEEeee
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCN-RQITVSYA 189 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g-~~l~v~~a 189 (377)
.+.|.|-+++... ...|.+.|++||.|++.. . -....+..|.|.+..+|++||. .|+..|+| ..|-|...
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~-~------~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHV-M------SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEE-E------CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEec-c------CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 4568888888764 567888999999996432 2 1234678999999999999998 59999985 66777776
Q ss_pred eec
Q 017119 190 YKK 192 (377)
Q Consensus 190 ~~~ 192 (377)
.++
T Consensus 95 ~d~ 97 (119)
T 1wwh_A 95 IDK 97 (119)
T ss_dssp CCH
T ss_pred CCH
Confidence 544
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.88 E-value=0.00037 Score=50.73 Aligned_cols=53 Identities=26% Similarity=0.370 Sum_probs=44.2
Q ss_pred eEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHc
Q 017119 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175 (377)
Q Consensus 113 ~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~ 175 (377)
.++| +++..+...||.++|+.||.+ .|+.+.| ..|||.|.+.+.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv--~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI--QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE--EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE--EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4556 999999999999999999976 3455554 259999999999999999875
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.86 E-value=0.0027 Score=48.91 Aligned_cols=79 Identities=18% Similarity=0.281 Sum_probs=57.2
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCC--------CC-----CCcceEEEEeCCHHHHHHHHHHHcCce
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPD--------TG-----NSRGFGFISYDSFEASDAAIEAMNGQY 178 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~--------~~-----~~kg~afV~f~~~~~A~~a~~~l~~~~ 178 (377)
..|.|-+++.+. ...+.+.|++||.|++.+...++.. .. ...++..|+|++..+|++||. .||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 357777776554 5678889999999976544332110 00 134567899999999999998 69999
Q ss_pred ecCeeeEEeeeeec
Q 017119 179 LCNRQITVSYAYKK 192 (377)
Q Consensus 179 ~~g~~l~v~~a~~~ 192 (377)
|+|..|-|....+.
T Consensus 86 i~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 FNGVLLGVIPYTKD 99 (132)
T ss_dssp ETTEECEEEECCHH
T ss_pred eCcEEEEEEECCHH
Confidence 99998888877654
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.47 E-value=0.0036 Score=45.69 Aligned_cols=72 Identities=13% Similarity=0.082 Sum_probs=51.6
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCC--CccceEEEEeCCHHHHHHHHHHhcCcccCC
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTN--LHQGYGFVEFRSEEDADYAIKVLNMIKLYG 93 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~--~~~g~afV~f~~~e~A~~A~~~l~~~~~~g 93 (377)
..+-+|.|+.||..+||+++.+.+..+=.+....++..+.+. ..-..|||.|.+.++.....+.+++..+.+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 356789999999999999998888766444333333222221 112468999999999999999888876543
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.46 E-value=0.0045 Score=45.16 Aligned_cols=70 Identities=9% Similarity=0.090 Sum_probs=50.6
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCC--CcceEEEEeCCHHHHHHHHHHHcCceecC
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGN--SRGFGFISYDSFEASDAAIEAMNGQYLCN 181 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~g 181 (377)
+.+|.|++|+..+||+++.+.++.+-.+ ....++....+.. .-..|||.|.+.++.....+.++|..+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~-d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAH-DYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSE-EECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCcc-ceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4579999999999999999888765443 3333322221111 11248999999999999999999998754
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.36 E-value=0.0018 Score=61.59 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=43.3
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHH
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~ 84 (377)
..++|+|. ++.++++.+|.++|++||.|.++.+.+++ ..||.|||.+.++++.+++
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 56899997 79999999999999999999999986653 2699999999999997765
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.07 E-value=0.029 Score=53.29 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=37.6
Q ss_pred CCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHH
Q 017119 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172 (377)
Q Consensus 111 ~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~ 172 (377)
.+.|+|. .+..+++.+|.++|++||.| ..+.+.++ ..-|++|+|++.+++..+++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i-~~~~~~~~-----~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPI-NNHFFYES-----FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCC-CCEEEECS-----SSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCc-ceEEEEcc-----CCeEEEEEeCCHHHHHHHHh
Confidence 3578997 67889999999999999998 44444432 23699999999999887764
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.63 E-value=0.47 Score=45.83 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=46.3
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNM 88 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~ 88 (377)
..++.++|+ ++..+...+|.++|+.||.+ +|+.+.+ ..|||.|.+.+.|..+++.++.
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 345566665 88899999999999999954 5555444 3799999999999999997753
No 402
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=88.10 E-value=4.8 Score=28.26 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=49.7
Q ss_pred cCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcC
Q 017119 21 RNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNM 88 (377)
Q Consensus 21 ~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~ 88 (377)
-.+++-|.|-|++..+-..++.-..+-.|---.|..+. |.|.+.|.+.++.+.|+..|-+
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHh
Confidence 45678899999999999999988888888776776644 4699999999999999987644
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=87.17 E-value=1.4 Score=30.25 Aligned_cols=60 Identities=12% Similarity=0.157 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHhhcCCe----eecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEeeee
Q 017119 122 DVDEKLLYDTFSAFGVI----VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAY 190 (377)
Q Consensus 122 ~~~~~~l~~~f~~~G~v----v~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~a~ 190 (377)
.++..+|..++..-+.+ +-.+.+. ..|.||+... +.+.++++.|++..+.|+.+.|+.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 35556777777665554 2223332 2378888854 56888999999999999999998764
No 404
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.43 E-value=1.9 Score=41.55 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=43.1
Q ss_pred CeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcC
Q 017119 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNG 176 (377)
Q Consensus 112 ~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~ 176 (377)
..++|+ ++..+...+|.++|+.||.+ +|+.+.| ..|||.|.+.+.|..+++.++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v--~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI--QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC--EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE--EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 356666 77788889999999999976 3344332 3599999999999999998864
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=74.26 E-value=19 Score=25.30 Aligned_cols=58 Identities=12% Similarity=0.102 Sum_probs=43.8
Q ss_pred CCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHc
Q 017119 109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175 (377)
Q Consensus 109 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~ 175 (377)
..++-+-|-|++..+...++.-.....|--. .+..+ .|-|+|.|.+.++-+.|+++|-
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyef-ycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEF-YCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCE-EEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeE-eeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 3456677889999998888888888777542 22221 3458999999999999999873
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=71.26 E-value=14 Score=24.94 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=41.8
Q ss_pred eEEEcCC-CcCCCHHHHHHHHHhcCC-----eEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 26 TAYVGNL-DPQVTEELLWELFVQAGP-----VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 26 ~l~v~nL-p~~~te~~L~~~f~~~G~-----i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
++||..- -..++..+|..++..-+. |-.|.+.. .|.||+.... .++++++.|++..+.|+.++++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 4555322 234667788888876543 56666633 3788887764 5777888899999999999887
Q ss_pred ecC
Q 017119 100 KAS 102 (377)
Q Consensus 100 ~~~ 102 (377)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 653
No 407
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=65.99 E-value=32 Score=24.31 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=23.7
Q ss_pred eEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 017119 51 VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87 (377)
Q Consensus 51 i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~ 87 (377)
|.++.+.. ...||.||++...++...+++...
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCT
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCC
Confidence 56665533 378999999999988888877443
No 408
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=62.46 E-value=11 Score=25.77 Aligned_cols=52 Identities=23% Similarity=0.080 Sum_probs=36.8
Q ss_pred CCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCceecCeeeEEe
Q 017119 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVS 187 (377)
Q Consensus 123 ~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 187 (377)
-++++|+.+++.|..-...++ .+|...+.++..+|.+..+...++-+.-+|.
T Consensus 33 ktedelkkyleefrkesqnik-------------vlilvsndeeldkakelaqkmeidvrtrkvt 84 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIK-------------VLILVSNDEELDKAKELAQKMEIDVRTRKVT 84 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEE-------------EEEEESSHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred ccHHHHHHHHHHHHhhccCeE-------------EEEEEcChHHHHHHHHHHHhhceeeeeeecC
Confidence 368899999998875422222 3577788899999998877777766555544
No 409
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=61.93 E-value=20 Score=23.58 Aligned_cols=54 Identities=7% Similarity=-0.077 Sum_probs=41.4
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHH
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIK 84 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~ 84 (377)
..++.|.++....=...|++.+++ ..|..+.+ ....+.+.|+|.+.++..++++
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v------~~~~~~~~v~~~~~~~i~~~i~ 59 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKV------DLNEAVVAGNKEDVDKYIKAVE 59 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEE------CSSEEEEEEEGGGHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEE------EccCCEEEEEECCHHHHHHHHH
Confidence 457899999888888999999999 88888887 3344567888875555566666
No 410
>2op5_A Hypothetical protein; ferredoxin-like protein, structural genomics, joint center F structural genomics, JCSG; 2.20A {Uncultured marine organism} SCOP: d.58.4.22
Probab=57.01 E-value=45 Score=22.96 Aligned_cols=48 Identities=25% Similarity=0.216 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHc
Q 017119 126 KLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMN 175 (377)
Q Consensus 126 ~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~ 175 (377)
+||...++..|-|-..+.-+ .+..+++-....+|++.+.-+++-+.++
T Consensus 37 edlysrlsaaglirhviskv--wnkeqhrismvfeydskegyqkcqeiid 84 (117)
T 2op5_A 37 EDLYSRLSAAGLIRHVISKV--WNKEQHRISMVFEYDSKEGYQKCQEIID 84 (117)
T ss_dssp HHHHHHHHHHTEEEEEEEEE--CCTTCCEEEEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH--hhhhhceeEEEEEeccHhhHHHHHHHHH
Confidence 67888888888772211112 2334566556779999998888776554
No 411
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=56.45 E-value=28 Score=24.93 Aligned_cols=55 Identities=9% Similarity=0.051 Sum_probs=32.7
Q ss_pred CCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeC--CHHHHHHHHHHHcCc
Q 017119 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYD--SFEASDAAIEAMNGQ 177 (377)
Q Consensus 123 ~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~--~~~~A~~a~~~l~~~ 177 (377)
..+-.|.++..+||..+..+.=-.+.-.+..-|.-+|++. +.++.++|++.|+..
T Consensus 32 ~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~~ 88 (98)
T 3ced_A 32 TTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIER 88 (98)
T ss_dssp CHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHHT
T ss_pred cCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHHC
Confidence 3456677777888754322111112223445677788887 467778888887643
No 412
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=51.97 E-value=34 Score=32.69 Aligned_cols=98 Identities=9% Similarity=0.072 Sum_probs=49.7
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHh---cCCeEEEEEeccCCCCCccceE-EEEeCCHHHHHHHHHHhcCcccCCceeEEe
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQ---AGPVVNVYVPKDRVTNLHQGYG-FVEFRSEEDADYAIKVLNMIKLYGKPIRVN 99 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~---~G~i~~v~i~~~~~~~~~~g~a-fV~f~~~e~A~~A~~~l~~~~~~g~~i~v~ 99 (377)
..+|.|+-||+.++.+.|.+...+ -+.|..|.-++|..+. .|.- -|++.....++..++.|-...-....+.++
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~--~gvrivIelk~~~~~e~vl~~L~k~t~Lq~s~~~N 352 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDR--TGLRIAIELKKDVNSESIKNYLYKNSDLQISYNFN 352 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBT--TBCCEEEEC------CHHHHHHTTSSTTEEEEEEE
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCCC--CceEEEEEECCCcCHHHHHHHHHHhcCceeeeeee
Confidence 468999999999999887765553 2455444444554322 2333 356776666666666554432111222221
Q ss_pred ecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhc
Q 017119 100 KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135 (377)
Q Consensus 100 ~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~ 135 (377)
..+++.+.+...+-.+|.+.|-.+
T Consensus 353 ------------m~al~~g~p~~~~l~~iL~~f~~~ 376 (514)
T 2inr_A 353 ------------MVAISDGRPKLMGIRQIIDSYLNH 376 (514)
T ss_dssp ------------CEEEETTEEEECCHHHHHHHHHHH
T ss_pred ------------EEEeeCCEEEECCHHHHHHHHHHH
Confidence 134466666666666666555443
No 413
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=50.61 E-value=16 Score=24.93 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHhcCCe-EEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEE
Q 017119 36 VTEELLWELFVQAGPV-VNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 36 ~te~~L~~~f~~~G~i-~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
.|+++|++++++|-.- .+|+ .+|...+.++..+|.+..+...++-+.-+|
T Consensus 33 ktedelkkyleefrkesqnik-------------vlilvsndeeldkakelaqkmeidvrtrkv 83 (110)
T 2kpo_A 33 KTEDELKKYLEEFRKESQNIK-------------VLILVSNDEELDKAKELAQKMEIDVRTRKV 83 (110)
T ss_dssp CSHHHHHHHHHHHTSSTTSEE-------------EEEEESSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccHHHHHHHHHHHHhhccCeE-------------EEEEEcChHHHHHHHHHHHhhceeeeeeec
Confidence 6899999999988531 1121 345567788888888866666665444433
No 414
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=48.42 E-value=43 Score=27.31 Aligned_cols=63 Identities=10% Similarity=0.229 Sum_probs=37.2
Q ss_pred cceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCccccCCCCeEEEcCCCCcCCHHH---HHHHHhhcCCee
Q 017119 66 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKL---LYDTFSAFGVIV 139 (377)
Q Consensus 66 ~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~---l~~~f~~~G~vv 139 (377)
+.-.||.|++.++|.++++ .+..+ ..|.|...............|+| +++| |+++.+.||.-+
T Consensus 97 ~~~v~il~k~p~d~~~lve--~Gv~i--~~vNvG~m~~~~gk~~i~~~V~v-------~~ed~~~lk~L~~~~Gv~v 162 (187)
T 3lfj_A 97 EEKVFLLFKNIDTCKRVMD--GGLPI--TTLNIGGVAKTPQRKGISQSVSL-------SEDEVKTLLELKTKYNVDV 162 (187)
T ss_dssp CEEEEEEESSHHHHHHHHH--TTCCC--SEEEEEEBCCCTTSEECSSSBEE-------CHHHHHHHHHHHHHHCCEE
T ss_pred CceEEEEECCHHHHHHHHH--cCCCC--CEEEECCCCCCCCCEEEeccEee-------CHHHHHHHHHHHhccCCEE
Confidence 4568999999999999988 44444 35555544333322222334444 3444 455556668654
No 415
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=47.37 E-value=30 Score=27.74 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=36.2
Q ss_pred eEEEcCCCc-C--------CCHHHHHHHH--HhcCCeEEEEEeccCCCCCccceEEEEeCCHHHH-HHHHH
Q 017119 26 TAYVGNLDP-Q--------VTEELLWELF--VQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDA-DYAIK 84 (377)
Q Consensus 26 ~l~v~nLp~-~--------~te~~L~~~f--~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A-~~A~~ 84 (377)
++.|-|++. . .+..+|++.| ..|..+. |+...+. .-++|++.|+|.+.-+- ..|++
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 345556655 1 4557899977 8898765 4554544 34789999999975543 33444
No 416
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=46.47 E-value=28 Score=32.77 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=37.5
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHh---cCCeEEEEEeccCCCCCccce-EEEEeCCHHHHHHHHHHh
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQ---AGPVVNVYVPKDRVTNLHQGY-GFVEFRSEEDADYAIKVL 86 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~---~G~i~~v~i~~~~~~~~~~g~-afV~f~~~e~A~~A~~~l 86 (377)
...+|.|+-||+.++.+.|.+.+.+ -+.+..|.-++|..+.. .|. --|+++....++..++.|
T Consensus 235 ~~~~ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd~-~gvrivI~lk~~~~~~~~l~~L 301 (470)
T 3ilw_A 235 GRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDR-VGLRIVIEIKRDAVAKVVINNL 301 (470)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTT-TBCCEEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCCC-CceEEEEEECCCCCHHHHHHHH
Confidence 4568999999999999987766554 24444344444442221 233 345676655666555544
No 417
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=46.29 E-value=34 Score=24.02 Aligned_cols=57 Identities=7% Similarity=0.068 Sum_probs=37.5
Q ss_pred EEEcCCCCcCCHHHHHHHHhhcCCe-eecceeecCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 017119 114 LFIGNLDPDVDEKLLYDTFSAFGVI-VTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173 (377)
Q Consensus 114 l~V~nl~~~~~~~~l~~~f~~~G~v-v~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~ 173 (377)
-|+-..+...+..+|+++++++-.+ |..+..+... .|. --|||.+....+|.....+
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~-~~~--KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITP-RGE--KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECT-TSC--EEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcC-CCc--eEEEEEcCCCCcHHHHHHh
Confidence 3444456678899999999875444 5566555432 222 2499999988887766554
No 418
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=43.82 E-value=19 Score=26.16 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=22.7
Q ss_pred CcCCHHHHHHHHhh-cCCeeecceeecCC--CCC--CCcceEEEEeCCHHHHHH
Q 017119 121 PDVDEKLLYDTFSA-FGVIVTNPKIMRDP--DTG--NSRGFGFISYDSFEASDA 169 (377)
Q Consensus 121 ~~~~~~~l~~~f~~-~G~vv~~~~i~~d~--~~~--~~kg~afV~f~~~~~A~~ 169 (377)
...+..+|++.+.+ |+.- .++.++... ..| ++.|||.| |+|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~-~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNAN-KQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSC-STTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCC-CCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35677788777654 3332 222222111 234 45555543 666666544
No 419
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=41.64 E-value=23 Score=22.65 Aligned_cols=54 Identities=9% Similarity=0.016 Sum_probs=38.5
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC---HHHHHHHHH
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS---EEDADYAIK 84 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~---~e~A~~A~~ 84 (377)
.++.|.++....-...|++.+.+...|..+.+.. ..+-+.|+|.+ .++..++++
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~------~~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNF------ALEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEET------TTTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEe------cCCEEEEEECCCCCHHHHHHHHH
Confidence 4688889888777888999999988888888733 33467788743 334444544
No 420
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=41.13 E-value=70 Score=20.55 Aligned_cols=55 Identities=18% Similarity=0.091 Sum_probs=40.5
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeC----CHHHHHHHHHH
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR----SEEDADYAIKV 85 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~----~~e~A~~A~~~ 85 (377)
.++.|.++....-...|++.+++...|.++.+.. ..+.+.|+|. +.++..++++.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~------~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVAL------LQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEG------GGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEe------cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678888887777788999999988888887733 3456788885 45566666663
No 421
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=40.85 E-value=57 Score=23.81 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=27.4
Q ss_pred CeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc
Q 017119 50 PVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 50 ~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~ 90 (377)
.|.++.... .-+||-|||=.+..+..+|++.+.+..
T Consensus 40 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 40 QIKSVVAPE-----HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCCEEEECT-----TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred ceEEEEecC-----CCceEEEEEeCCHHHHHHHHhccccee
Confidence 366666533 358999999999999999998665543
No 422
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=40.19 E-value=49 Score=31.31 Aligned_cols=63 Identities=17% Similarity=0.145 Sum_probs=38.1
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHh---cCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHh
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQ---AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVL 86 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~---~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l 86 (377)
...+|.|+-||+.++.+.|.+...+ -+.+..|.-++|..+...- ..-|+.+....++..++.|
T Consensus 225 ~~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gv-rivIelk~~~~~~~~l~~L 290 (500)
T 3lpx_A 225 GKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGM-RMVIEIKRGEVGEVVLNNL 290 (500)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSSCSEEEEEECCCSSCC-CEEEEECTTSCHHHHHHHH
T ss_pred CCceEEEEecCCccCHHHHHHHHHHHHhcCCCCccccchhcCCCCce-EEEEEECCCCCHHHHHHHH
Confidence 4568999999999998887766543 2444444444554332211 2335676665665555544
No 423
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=40.17 E-value=86 Score=22.05 Aligned_cols=54 Identities=9% Similarity=0.116 Sum_probs=36.8
Q ss_pred EEEcCCCcCCCHHHHHHHHHhcCCe-----EEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 017119 27 AYVGNLDPQVTEELLWELFVQAGPV-----VNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87 (377)
Q Consensus 27 l~v~nLp~~~te~~L~~~f~~~G~i-----~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~ 87 (377)
|++-.++.+++-++|.+.+++.-.+ ..++.+.+ .| -+|++.+.++-+.|++.+.
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE--eG-----D~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE--EG-----DPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS--SS-----CCEECCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC--CC-----CcccccCHHHHHHHHHHHH
Confidence 5566678899999998777653332 33444333 23 3599999999999998543
No 424
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=43.43 E-value=7.1 Score=28.75 Aligned_cols=61 Identities=16% Similarity=0.041 Sum_probs=36.7
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccce--EEEEeCCHHHHHHHHHHhcC
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGY--GFVEFRSEEDADYAIKVLNM 88 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~--afV~f~~~e~A~~A~~~l~~ 88 (377)
...||=|..+ .++++|.++.++.+ +..+.+.+....|.. -| -+=.|.+.++|++|++.|-.
T Consensus 24 ~~YTLQL~a~---~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 24 SHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 3455555444 55677888888876 445555543322221 12 12278899999999987754
No 425
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=35.95 E-value=74 Score=23.26 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=27.9
Q ss_pred cCCCHHHHHHHHHh-cCC----eEEEEEeccCCCCCccceEEEEeCCHHHHHHH
Q 017119 34 PQVTEELLWELFVQ-AGP----VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYA 82 (377)
Q Consensus 34 ~~~te~~L~~~f~~-~G~----i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A 82 (377)
...+..||++.+.+ |+. |.-..+......+.++|||.| |.|.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35788888877764 443 211222222233567777755 8888887653
No 426
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=35.30 E-value=44 Score=23.87 Aligned_cols=63 Identities=14% Similarity=0.023 Sum_probs=39.7
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEec-cCCCCCccceEEEEeCC--HHHHHHHHHHhcC
Q 017119 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPK-DRVTNLHQGYGFVEFRS--EEDADYAIKVLNM 88 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~-~~~~~~~~g~afV~f~~--~e~A~~A~~~l~~ 88 (377)
.|.|.-......+..|.++.++||.-.+|..-. +...+..-|.-+|++.. .++.++|++.|+.
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 555655555677778888889998533332211 22224456777888884 6677888887754
No 427
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=34.17 E-value=55 Score=32.45 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=38.5
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHh---cCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhc
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQ---AGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLN 87 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~---~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~ 87 (377)
...+|.|+-||+.++.+.|.+...+ -+.+..|.-++|..+....-.--|++.....++..++.|-
T Consensus 456 ~~~~ivITElPy~v~k~~lie~I~~lv~~kki~~I~d~rDetsd~~gvrivI~lk~~~~~~~~l~~L~ 523 (692)
T 2xcs_B 456 GRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLY 523 (692)
T ss_dssp TEEEEEEEECCTTCCHHHHHHHHHHHHHTTCSCCEEEEEECCBTTTBSCEEEEECTTSCHHHHHHHHH
T ss_pred CCceEEEEecCCcccHHHHHHHHHHHHhcCCCCCeeeccccCCCCCceEEEEEECCCCCHHHHHHHHH
Confidence 3568999999999998887665543 2444444444554122111123467777666666555443
No 428
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=33.97 E-value=6.3 Score=31.01 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeC
Q 017119 39 ELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR 74 (377)
Q Consensus 39 ~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~ 74 (377)
+|+.++|...|.|+-+. ..+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn--------~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--------VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--------TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--------CCCCeeEEeeC
Confidence 46667777777766542 36789999765
No 429
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=33.09 E-value=83 Score=19.10 Aligned_cols=54 Identities=15% Similarity=0.031 Sum_probs=35.9
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC---HHHHHHHHHH
Q 017119 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS---EEDADYAIKV 85 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~---~e~A~~A~~~ 85 (377)
++.|.++....-...|++.+.+...|..+.+-. ..+.+.|+|.. .++..++++.
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~------~~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSV------EKKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEET------TTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEc------CCCEEEEEECCCCCHHHHHHHHHH
Confidence 466777776666678889998887788877733 33467788763 3444555553
No 430
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=39.20 E-value=9.1 Score=27.14 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=37.7
Q ss_pred cccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEe-------------ccCC----CCCccceEEEEeCCHHHHHH
Q 017119 19 AERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVP-------------KDRV----TNLHQGYGFVEFRSEEDADY 81 (377)
Q Consensus 19 ~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~-------------~~~~----~~~~~g~afV~f~~~e~A~~ 81 (377)
.+-++++-|.|-|++..+-..++.-..+-.|.-..|..+ .|.. +-...|.|.+.|.+.++.+.
T Consensus 13 veikqnclikiinipqgtlkaevvlavrhlgyefycdyidensnqinsnliqqdqhpqlndllkegqamirfqnsdeqrl 92 (137)
T 2lsl_A 13 VEIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDENSNQINSNLIQQDQHPQLNDLLKEGQAMIRFQNSDEQRL 92 (137)
Confidence 445667778888888887777664333332221111111 1111 01234677788888877777
Q ss_pred HHHHh
Q 017119 82 AIKVL 86 (377)
Q Consensus 82 A~~~l 86 (377)
|+..|
T Consensus 93 aiqkl 97 (137)
T 2lsl_A 93 AIQKL 97 (137)
Confidence 77654
No 431
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=32.69 E-value=58 Score=25.33 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=23.7
Q ss_pred cCCHHHHHHHHhh-cCCeeecceeecCC--CCCC--CcceEEEEeCCHHHHHH
Q 017119 122 DVDEKLLYDTFSA-FGVIVTNPKIMRDP--DTGN--SRGFGFISYDSFEASDA 169 (377)
Q Consensus 122 ~~~~~~l~~~f~~-~G~vv~~~~i~~d~--~~~~--~kg~afV~f~~~~~A~~ 169 (377)
..+..||++.+.. |+.- .++.++... ..|. +.|||.| |+|.+.|.+
T Consensus 32 TpSk~eIrekLAkmy~~~-~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 32 TASKEKIREELAKQLKVD-ARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp SCCHHHHHHHHHHHHTCC-GGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCC-CCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 5677888877765 4443 233333222 2334 4444444 666666554
No 432
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=32.54 E-value=2.2e+02 Score=23.83 Aligned_cols=148 Identities=12% Similarity=0.014 Sum_probs=78.1
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCC-eEEE---EEeccCCC-------CCccceEEEEeCCHHHHHHHHHHhcCcc--
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGP-VVNV---YVPKDRVT-------NLHQGYGFVEFRSEEDADYAIKVLNMIK-- 90 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~-i~~v---~i~~~~~~-------~~~~g~afV~f~~~e~A~~A~~~l~~~~-- 90 (377)
.++|.|..= .-..++|.+.+++.|- +..+ ++...... ..-..|.+|.|.+...++..++.+....
T Consensus 6 g~~vlvtRp--~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~~aV~~~~~~l~~~~~~ 83 (254)
T 4es6_A 6 GWRLLLTRP--DEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYWPQ 83 (254)
T ss_dssp CCEEEECSC--HHHHHHHHHHHHHTTCEEEECCSCEEEECCCCHHHHHHHHTGGGCSEEEECSHHHHHHHHHHHHHHCSS
T ss_pred CCEEEEeCC--hHHhHHHHHHHHHCCCcEEEeCCEEEeeCcChHHHHHHHHhccCCCEEEEECHHHHHHHHHHHHHhCCC
Confidence 345555432 1223578888888884 2221 11111111 1124688999999999998877654221
Q ss_pred cCCceeE----------------EeecCcCc---------c-----ccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeee
Q 017119 91 LYGKPIR----------------VNKASQDK---------K-----SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140 (377)
Q Consensus 91 ~~g~~i~----------------v~~~~~~~---------~-----~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~ 140 (377)
+.+..+. +.+..... . .....+.|++++ +...++|.+.+.+.|..+.
T Consensus 84 ~~~~~i~aVG~~Ta~~L~~~G~~~~~~~~~~~~e~L~~~l~~~~~~~~~~~~vL~~rg---~~~r~~L~~~L~~~G~~v~ 160 (254)
T 4es6_A 84 PPQQTWCSVGAATAAILEAYGLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRG---EGGREFLAERLRGQGVQVD 160 (254)
T ss_dssp CCSCEEEESSHHHHHHHHHHTCCEECCSSCCSHHHHHTCHHHHHHTCSSSCEEEEEEC---SSCCCHHHHHHHHTTCEEE
T ss_pred cccCEEEEECHHHHHHHHHcCCCcccCCCCCCHHHHHHhHhhcccccCCCCEEEEEcC---CccHHHHHHHHHHCCCEEE
Confidence 1111111 11111100 0 112233455543 2345678888888887655
Q ss_pred cceeecCCCCCC----------CcceEEEEeCCHHHHHHHHHHHcC
Q 017119 141 NPKIMRDPDTGN----------SRGFGFISYDSFEASDAAIEAMNG 176 (377)
Q Consensus 141 ~~~i~~d~~~~~----------~kg~afV~f~~~~~A~~a~~~l~~ 176 (377)
.+.+.+...... ...+-.|.|.+.+.++..++.+..
T Consensus 161 ~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 161 YLPLYRRRAPDYPAGELLARVRAERLNGLVVSSGQGLQNLYQLAAA 206 (254)
T ss_dssp EEECEEEECCCCCTTHHHHHHHHTTCCEEECCSHHHHHHHHHHHGG
T ss_pred EEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCHHHHHHHHHHhhH
Confidence 554443322111 124678999999999988887654
No 433
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=31.79 E-value=1.8e+02 Score=22.49 Aligned_cols=44 Identities=16% Similarity=0.030 Sum_probs=30.4
Q ss_pred CCCCCcCCCCccccCCCCeEEEcCCCcCCCHHHHHHHHHhcCCe
Q 017119 8 GVGANLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPV 51 (377)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~v~nLp~~~te~~L~~~f~~~G~i 51 (377)
-++........-..+....+|+|++...-.-+.|.+.|...-.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~ 51 (177)
T 2f9f_A 8 HSHPVETSKFKFKCYGDFWLSVNRIYPEKRIELQLEVFKKLQDE 51 (177)
T ss_dssp ----CCCTTCCCCCCCSCEEEECCSSGGGTHHHHHHHHHHCTTS
T ss_pred cCCCccccccccCCCCCEEEEEeccccccCHHHHHHHHHhCCCc
Confidence 34444444555566778899999999888888899998887433
No 434
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.65 E-value=89 Score=21.87 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=34.7
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeC-CHHHHHHHHH
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR-SEEDADYAIK 84 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~-~~e~A~~A~~ 84 (377)
.++.|. +....-...|++.+.+...|.++.+-. ..+.+.|+|. +.++..++++
T Consensus 21 ~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl------~~~~~~V~~~~~~~~i~~~i~ 74 (98)
T 2crl_A 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHL------EDQMVLVHTTLPSQEVQALLE 74 (98)
T ss_dssp EEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEET------TTTEEEEEESSCHHHHHHHHH
T ss_pred EEEEEe-eECHHHHHHHHHHHHcCCCceEEEEEC------CCCEEEEEEeCCHHHHHHHHH
Confidence 456777 665555678888898887788888733 2345677774 3444555554
No 435
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=31.45 E-value=80 Score=22.20 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=21.3
Q ss_pred CcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 153 SRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 153 ~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
..||.||+++..++...+++...+.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 7999999999999988888766554
No 436
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=31.12 E-value=95 Score=19.18 Aligned_cols=54 Identities=9% Similarity=0.016 Sum_probs=36.3
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCH---HHHHHHHH
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE---EDADYAIK 84 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~---e~A~~A~~ 84 (377)
.++.|.++....-...|++.+.+...|.++.+.. ..+.+.|+|... ++..++++
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~------~~~~~~v~~~~~~~~~~i~~~i~ 61 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNF------ALEQAVVSYHGETTPQILTDAVE 61 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEET------TTTEEEEEEC---CHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEc------cCCEEEEEECCCCCHHHHHHHHH
Confidence 3678888877666778899999988888888733 335677888643 33344444
No 437
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=31.06 E-value=30 Score=25.18 Aligned_cols=55 Identities=24% Similarity=0.198 Sum_probs=34.2
Q ss_pred CCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeC-CHHHHHHHHHHHcCc
Q 017119 123 VDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYD-SFEASDAAIEAMNGQ 177 (377)
Q Consensus 123 ~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~-~~~~A~~a~~~l~~~ 177 (377)
+.+-.|.++..+||..++.+.=-.+.-.+..-|.-+|++. +.++.++|++.|...
T Consensus 33 ~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 33 VDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp TTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred cChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 4456788888899865432222222233456677778875 456778888887654
No 438
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=30.92 E-value=86 Score=19.40 Aligned_cols=53 Identities=9% Similarity=0.048 Sum_probs=36.3
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCH---HHHHHHHH
Q 017119 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSE---EDADYAIK 84 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~---e~A~~A~~ 84 (377)
++.|.++....-...|++.+.+...|..+.+-. ..+.+.|+|... ++..++++
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~------~~~~~~v~~~~~~~~~~i~~~i~ 58 (69)
T 2kt2_A 3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSY------PKGTAQLAIVPGTSPDALTAAVA 58 (69)
T ss_dssp CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEET------TTTEEEEEECTTSCHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEc------cCCEEEEEECCCCCHHHHHHHHH
Confidence 577888877666788999999888888888733 334677887643 33444444
No 439
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=30.84 E-value=1.1e+02 Score=25.06 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=24.7
Q ss_pred CCcceEEEEeCCHHHHHHHHHHHcCceec
Q 017119 152 NSRGFGFISYDSFEASDAAIEAMNGQYLC 180 (377)
Q Consensus 152 ~~kg~afV~f~~~~~A~~a~~~l~~~~~~ 180 (377)
.-|||.|||-.+..+..+|++.+.+....
T Consensus 147 ~lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 147 NYTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp TSTTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred CCcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 47999999999999999999988776443
No 440
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=30.75 E-value=1.4e+02 Score=21.30 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=39.7
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC----HHHHHHHHH
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS----EEDADYAIK 84 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~e~A~~A~~ 84 (377)
.++.|.++....-...|.+.+.+.-.|..+.+.. ..+.+.|+|.. .++..++++
T Consensus 10 ~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~------~~~~~~V~~~~~~~~~~~i~~~i~ 67 (111)
T 2ofg_X 10 QQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTV------ATGRLTVTYDPKQVSEITIQERIA 67 (111)
T ss_dssp EEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEET------TTTEEEEEECTTTCSHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEC------CCCEEEEEECCCCCCHHHHHHHHH
Confidence 4688999988888888999999987788888733 34567888874 344445555
No 441
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=30.67 E-value=1.2e+02 Score=21.69 Aligned_cols=98 Identities=9% Similarity=0.024 Sum_probs=52.1
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCc
Q 017119 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK 105 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 105 (377)
.|.+.+-=...+.++|++.+.+.-.-.. .++.| +.-|+|-|.......+...+...-.|
T Consensus 16 v~~l~G~ld~~~~~~l~~~l~~~~~~~~-~vvlD--------ls~v~~iDssgl~~L~~~~~~~~~~g------------ 74 (117)
T 4hyl_A 16 IITLHGHLDTRSSPAVQAAVLPRVTAKG-KMILD--------LREVSYMSSAGLRVLLSLYRHTSNQQ------------ 74 (117)
T ss_dssp EEEEEEEECSSSHHHHHHHHGGGCCTTC-EEEEE--------EEEEEEECHHHHHHHHHHHHHHHHTT------------
T ss_pred EEEEEeEEcchhHHHHHHHHHHHHccCC-eEEEE--------CCCCcEEcHHHHHHHHHHHHHHHHcC------------
Confidence 4444442234566777777766421111 22222 44577888776665555333222222
Q ss_pred cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHH
Q 017119 106 KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172 (377)
Q Consensus 106 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~ 172 (377)
..+.+.++. ..++++|+..|-. .. |-.|.+.++|.+++.
T Consensus 75 ------~~l~l~~~~-----~~v~~~l~~~gl~-~~----------------~~i~~~~~~Al~~~~ 113 (117)
T 4hyl_A 75 ------GALVLVGVS-----EEIRDTMEITGFW-NF----------------FTACASMDEALRILG 113 (117)
T ss_dssp ------CEEEEECCC-----HHHHHHHHHHTCG-GG----------------CEEESCHHHHHHHHC
T ss_pred ------CEEEEEeCC-----HHHHHHHHHhCcc-ce----------------eeecCCHHHHHHHhc
Confidence 345555554 6788888877743 11 234778888766653
No 442
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=30.37 E-value=55 Score=25.50 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=37.0
Q ss_pred EEEcCCCCcCCHHHHHHHHhhc-CCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 017119 114 LFIGNLDPDVDEKLLYDTFSAF-GVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173 (377)
Q Consensus 114 l~V~nl~~~~~~~~l~~~f~~~-G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~ 173 (377)
-|+-.++...+..+|+++++.+ +.-|..|..+.... |. --|||.+....+|......
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g~--KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-GN--KKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SC--EEEEEEECSSSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-Cc--EEEEEEcCCCCcHHHHHHh
Confidence 4444566778899999999875 43355665554322 22 2389999888777765544
No 443
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=29.75 E-value=1.6e+02 Score=25.96 Aligned_cols=92 Identities=12% Similarity=0.059 Sum_probs=53.0
Q ss_pred CCCeEEEcCCCcC----------CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc--
Q 017119 23 QDATAYVGNLDPQ----------VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK-- 90 (377)
Q Consensus 23 ~~~~l~v~nLp~~----------~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~-- 90 (377)
....|.|+|..++ .+.+.|.+.|++.|= +|.+..|. +.++.+++++.+....
T Consensus 61 rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF--~V~~~~dl--------------t~~em~~~l~~f~~~~h~ 124 (316)
T 2fp3_A 61 RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNF--TIFPYGNV--------------NQDQFFKLLTMVTSSSYV 124 (316)
T ss_dssp SEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTE--EEEEECSC--------------CHHHHHHHHHHHHTSHHH
T ss_pred CcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCC--EEEEccCC--------------CHHHHHHHHHHHHHHhhc
Confidence 4457889988765 456678999999883 45554443 5667777777665443
Q ss_pred -cCCceeEEeecCcCccccCCCCeEEEcCCCCc-CCHHHHHHHHhh
Q 017119 91 -LYGKPIRVNKASQDKKSLDVGANLFIGNLDPD-VDEKLLYDTFSA 134 (377)
Q Consensus 91 -~~g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~-~~~~~l~~~f~~ 134 (377)
-.+..+.+-.+..... .....|| ..+.. +.-++|.++|..
T Consensus 125 ~~~D~~vv~ilSHG~~~--~g~g~i~--g~D~~~v~l~~I~~~f~~ 166 (316)
T 2fp3_A 125 QNTECFVMVLMTHGNSV--EGKEKVE--FRDGSVVDMQKIKDHFQT 166 (316)
T ss_dssp HTCSCEEEEEESCEECC--TTCCEEE--CTTSCEEEHHHHHHTTST
T ss_pred CCCCEEEEEEccCCCcc--CCCCEEE--eecCcEEeHHHHHHHhcc
Confidence 2333443433322211 1112333 33443 667888888863
No 444
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=29.73 E-value=1.3e+02 Score=20.15 Aligned_cols=56 Identities=9% Similarity=0.022 Sum_probs=33.1
Q ss_pred CCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHHcCc
Q 017119 120 DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQ 177 (377)
Q Consensus 120 ~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l~~~ 177 (377)
+..-.-.+|.++|.+.|.-+..+...... +.......++..+.+...++++.|...
T Consensus 14 Dr~G~L~~I~~~la~~~inI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~ 69 (88)
T 2ko1_A 14 DKNGMTNQITGVISKFDTNIRTIVLNAKD--GIFTCNLMIFVKNTDKLTTLMDKLRKV 69 (88)
T ss_dssp CCTTHHHHHHHHHTTSSSCEEEEEEEECS--SEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHHHCCCCeEEEEEEEcC--CEEEEEEEEEECCHHHHHHHHHHHhcC
Confidence 33344578889999988666555554321 111111224566777888888887653
No 445
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=29.03 E-value=62 Score=25.01 Aligned_cols=57 Identities=7% Similarity=0.109 Sum_probs=36.8
Q ss_pred EEEcCCCCcCCHHHHHHHHhhc-CCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 017119 114 LFIGNLDPDVDEKLLYDTFSAF-GVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173 (377)
Q Consensus 114 l~V~nl~~~~~~~~l~~~f~~~-G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~ 173 (377)
-|+-.++...+..+|+++++.+ +.-|..|..+.... |. --|||.+....+|......
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g~--KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-GT--KKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-SC--EEEEEEECTTCCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-Cc--eEEEEEeCCCCcHHHHHHh
Confidence 4444566778889999998875 43356665554322 22 2389999888777665544
No 446
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=28.65 E-value=1.1e+02 Score=19.01 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=37.5
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC----HHHHHHHHHHh
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS----EEDADYAIKVL 86 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~e~A~~A~~~l 86 (377)
.++.|.++....-...|.+.+.+...|..+.+-. ..+.+.|+|.. .++..++++.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~------~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 5 TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSL------ANSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEET------TTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEc------cCCEEEEEECCCcCCHHHHHHHHHHC
Confidence 3678888877666677888898887777777632 33567788863 34455555533
No 447
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=28.06 E-value=91 Score=25.65 Aligned_cols=34 Identities=9% Similarity=0.124 Sum_probs=25.8
Q ss_pred eEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCc
Q 017119 51 VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMI 89 (377)
Q Consensus 51 i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~ 89 (377)
|.++... ..-+||.|||=.+..+.++|++.+.+.
T Consensus 139 I~Si~~~-----d~lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 139 ILSIFQR-----DNYTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp CCEEECC-----TTSTTEEEEECSCHHHHHHHHTTCTTE
T ss_pred EEEEEec-----CCCcEEEEEEECCHHHHHHHHhhhhhh
Confidence 5555542 236899999999999999999866554
No 448
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=27.99 E-value=1.3e+02 Score=19.76 Aligned_cols=56 Identities=13% Similarity=0.058 Sum_probs=40.5
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeC----CHHHHHHHHHH
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR----SEEDADYAIKV 85 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~----~~e~A~~A~~~ 85 (377)
..++.|.++....-...|++.+.+...|..+.+- ...+.+.|+|. +.++..++++.
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~------~~~~~~~v~~~~~~~~~~~i~~~i~~ 69 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVS------LDNQEATIVYQPHLISVEEMKKQIEA 69 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEEC------STTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEE------ecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3578899998877778899999998888888873 23456788885 34455555553
No 449
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=27.78 E-value=1.4e+02 Score=21.62 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=24.1
Q ss_pred HHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC
Q 017119 39 ELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75 (377)
Q Consensus 39 ~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 75 (377)
-+|.+.+++.| |.+..|..+.. ...-|+++++.+
T Consensus 27 PEv~~~L~~aG-i~~ysIfl~~~--~~~LF~~~E~~d 60 (104)
T 1x8d_A 27 PELEAVLKSHG-AHNYAIYLDKA--RNLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHHTT-EEEEEEEEETT--TTEEEEEEEESC
T ss_pred HHHHHHHHHcC-CeEEEEEEECC--CCeEEEEEEEcC
Confidence 46788888887 66767766542 233589999988
No 450
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=27.58 E-value=1e+02 Score=22.80 Aligned_cols=60 Identities=8% Similarity=0.202 Sum_probs=35.3
Q ss_pred EEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCccccCCCCeEEEcCC----CC--cCCHHHHHHHHhhcCCe
Q 017119 70 FVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNL----DP--DVDEKLLYDTFSAFGVI 138 (377)
Q Consensus 70 fV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~V~nl----~~--~~~~~~l~~~f~~~G~v 138 (377)
||.+--.++...++..|-+..+--.++.+.....+ .++|-.| +. -++.+||.++|++ |.|
T Consensus 41 ~iSaIGH~sTA~lls~Llg~~ip~NR~~i~~~~GD--------~alv~~L~~Rl~EG~vl~~eEi~k~~e~-g~i 106 (114)
T 2x4i_A 41 IINSIGHDSTIQLINSLCGTTFQKNRVEIKLEKED--------KLYVVQISQRLEEGKILTLEEILKLYES-GKV 106 (114)
T ss_dssp EEECCCCHHHHHHHHHHHCCCCCCCCCCCCBCTTC--------EEEEEEEC-------CCCHHHHHHHHHH-TCE
T ss_pred eEEeeccHHHHHHHHHHhCCCccccceeEEecCCC--------EEEEEEecccCCCCccCCHHHHHHHHHc-Cce
Confidence 56666778888888877776655444444333322 3333223 32 2467999999876 665
No 451
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=27.37 E-value=1.1e+02 Score=18.65 Aligned_cols=53 Identities=17% Similarity=0.067 Sum_probs=37.4
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC----HHHHHHHHH
Q 017119 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS----EEDADYAIK 84 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~e~A~~A~~ 84 (377)
++.|.++....-...|++.+.+...|..+.+-. ..+.+.|+|.. .++..++++
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~------~~~~~~v~~~~~~~~~~~i~~~i~ 59 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQL------KKEKAVVKFDEANVQATEICQAIN 59 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEET------TTTEEEEEECTTTCCHHHHHHHHH
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEe------cCCEEEEEECCCCCCHHHHHHHHH
Confidence 578889887777788999999987788887733 33567788863 344444444
No 452
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=27.33 E-value=38 Score=17.29 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHhc
Q 017119 36 VTEELLWELFVQA 48 (377)
Q Consensus 36 ~te~~L~~~f~~~ 48 (377)
-+|.+|+++.++|
T Consensus 13 rnekelrdfiekf 25 (28)
T 1fme_A 13 RNEKELRDFIEKF 25 (28)
T ss_dssp CCHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHh
Confidence 4688999999987
No 453
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=26.94 E-value=58 Score=24.92 Aligned_cols=48 Identities=8% Similarity=0.140 Sum_probs=31.0
Q ss_pred EcCCCcCCCHHHHHHHHH-hcC--CeEEEEEeccCC----------CCCccceEEEEeCCH
Q 017119 29 VGNLDPQVTEELLWELFV-QAG--PVVNVYVPKDRV----------TNLHQGYGFVEFRSE 76 (377)
Q Consensus 29 v~nLp~~~te~~L~~~f~-~~G--~i~~v~i~~~~~----------~~~~~g~afV~f~~~ 76 (377)
+..+..-++++++++.+. +++ .|.++.+-.... .....+|.|+.|.+-
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~G 128 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTG 128 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTTC
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeCC
Confidence 666788899999999995 444 466655522111 133456888888763
No 454
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=26.82 E-value=76 Score=21.61 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=38.4
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC----HHHHHHHHH
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS----EEDADYAIK 84 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~e~A~~A~~ 84 (377)
.++.|.++....-...|.+.+.+...|..+.+.. ..+.+.|+|.. .++..++++
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l------~~~~~~V~~~~~~~~~~~i~~~i~ 62 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSL------ENRSAIVVYNASSVTPESLRKAIE 62 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEET------TTTEEEEEECCSSCCTHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEc------cCCEEEEEECCCCCCHHHHHHHHH
Confidence 4688888877766778999999888888888733 33567888863 344555555
No 455
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=26.78 E-value=1.2e+02 Score=18.82 Aligned_cols=55 Identities=15% Similarity=0.018 Sum_probs=38.7
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC----HHHHHHHHHH
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS----EEDADYAIKV 85 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~e~A~~A~~~ 85 (377)
.++.|.++....-...|++.+.+...|.++.+-. ..+.+.|+|.. .++..++++.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~------~~~~~~v~~~~~~~~~~~i~~~i~~ 63 (72)
T 1osd_A 5 VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTF------ETRQAVVTFDDAKTSVQKLTKATAD 63 (72)
T ss_dssp EEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEET------TTTEEEEEEETTTCCHHHHHHHHHH
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEe------cCCEEEEEECCCCCCHHHHHHHHHh
Confidence 3678888887777788999999988888887733 33567788753 4445555553
No 456
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=26.78 E-value=1.2e+02 Score=18.80 Aligned_cols=54 Identities=19% Similarity=0.014 Sum_probs=37.1
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC----HHHHHHHHH
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS----EEDADYAIK 84 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~e~A~~A~~ 84 (377)
.++.|.++....-...|.+.+.+...|..+.+-. ..+.+.|+|.. .++..++++
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~------~~~~~~v~~~~~~~~~~~i~~~i~ 64 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQL------AEGTVEVTIDSSVVTLKDIVAVIE 64 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEET------TTTEEEEEEETTTSCHHHHHHHHH
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEe------cCCEEEEEECCCCCCHHHHHHHHH
Confidence 4688888877666677889999887788887733 33567787753 344455555
No 457
>2bu3_A ALR0975 protein; phytochelatin synthase, PCS, acyl-enzyme intermedia nostoc, glutathione metabolism, cysteine protease, transfer; HET: 3GC; 1.4A {Anabaena SP} SCOP: d.3.1.14 PDB: 2btw_A* 2btw_B
Probab=26.57 E-value=2.5e+02 Score=23.92 Aligned_cols=101 Identities=22% Similarity=0.214 Sum_probs=56.1
Q ss_pred cCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHH-hcCcccCCceeEEeecCcCcccc----
Q 017119 34 PQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKV-LNMIKLYGKPIRVNKASQDKKSL---- 108 (377)
Q Consensus 34 ~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~-l~~~~~~g~~i~v~~~~~~~~~~---- 108 (377)
.-+|-++|..+.+.+|--.++....+ .+.++-.+.+.. ++ -.++.|.|++....-...
T Consensus 132 ~GiTL~el~~La~c~G~~v~~y~a~~--------------~sl~~fR~~v~~~~~---~~~~~vvvny~R~~l~q~G~GH 194 (254)
T 2bu3_A 132 QGMTLDELGRLIASYGVKVKVNHASD--------------TNIEDFRKQVAENLK---QDGNFVIVNYLRKEIGQERGGH 194 (254)
T ss_dssp HCCCHHHHHHHHHTTTCEEEEEEGGG--------------SCHHHHHHHHHHHHT---CTTEEEEEEEEGGGGTCSSSEE
T ss_pred CCcCHHHHHHHHHhCCceEEEEECCc--------------CcHHHHHHHHHHHhC---CCCcEEEEEeEccccCCCCCCc
Confidence 34788899999988885333322111 244544444442 22 245777777765432211
Q ss_pred --------CCCCeEEEcC------CCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeC
Q 017119 109 --------DVGANLFIGN------LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYD 162 (377)
Q Consensus 109 --------~~~~~l~V~n------l~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~ 162 (377)
..+..+.|-. .++|+.-++|++.+... |..++++|||.+|.-.
T Consensus 195 fSPIggY~~~~D~vLIlDVar~kYpp~WV~~~~L~~Am~~~-----------D~~s~~~RG~~li~~~ 251 (254)
T 2bu3_A 195 ISPLAAYNEQTDRFLIMDVSRYKYPPVWVKTTDLWKAMNTV-----------DSVSQKTRGFVFVSKT 251 (254)
T ss_dssp EEEEEEEETTTTEEEECCSCTTTCCCEEEEHHHHHHHHSSE-----------ETTTTEECEEEEEEC-
T ss_pred eeceeeEcCCCCeEEEEecCccCCCCEeeeHHHHHHHHhcc-----------cccCCCcceEEEEecc
Confidence 1122344322 45677778888777541 3367888988887643
No 458
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=26.05 E-value=1.2e+02 Score=18.88 Aligned_cols=46 Identities=4% Similarity=-0.012 Sum_probs=35.2
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS 75 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~ 75 (377)
..++.|.++....-...|.+.+.+...|..+.+-. ..+.+.|+|..
T Consensus 5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~------~~~~~~v~~~~ 50 (75)
T 1yjr_A 5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVAL------ATNKAHIKYDP 50 (75)
T ss_dssp CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEET------TTTEEEEEECT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEe------cCCEEEEEECC
Confidence 35788999988777888999999988888887733 33567788864
No 459
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=25.66 E-value=94 Score=21.10 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=36.7
Q ss_pred eEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCee
Q 017119 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139 (377)
Q Consensus 68 ~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv 139 (377)
|.++.|....++.+-++ ....++..-||.-....++. ..=.++|| |..+++++++..++++|-.++
T Consensus 7 Yvl~~~~a~~~~i~Ele--r~~rine~VlR~l~vr~d~~--r~YE~m~I--l~P~l~ee~~~~~vek~~~~i 72 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLA--RELRIRDNVRRVMVVASTTP--GRYEVNIV--LNPNLDQSQLQNEKEIIQRAL 72 (77)
T ss_dssp EEEEEEECCHHHHHHHH--HHHHTSTTEEEEEEEECSST--TEEEEEEE--ECTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEeCHhHHHHHH--HHhCCCHHHHHHHHHhccCC--CceEEEEE--ECCCCCHHHHHHHHHHHHHHH
Confidence 78889987666555554 22334444444322221110 11125676 445678889988888875553
No 460
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=25.44 E-value=2.1e+02 Score=21.39 Aligned_cols=110 Identities=11% Similarity=0.019 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCC-eEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCccccCCCCeEEE
Q 017119 38 EELLWELFVQAGP-VVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFI 116 (377)
Q Consensus 38 e~~L~~~f~~~G~-i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~V 116 (377)
-.+|.+.|.+.|- |..+.+.... ..++..+++.+.+.|.++++.. +.. +... ..+-|
T Consensus 20 l~~i~~~la~~~inI~~i~~~~~~----~~~~~~~~~~d~~~a~~~L~~~-G~~-----v~~~------------svv~v 77 (144)
T 2f06_A 20 LTEVTEVLAKENINLSALCIAENA----DFGILRGIVSDPDKAYKALKDN-HFA-----VNIT------------DVVGI 77 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECS----SCEEEEEEESCHHHHHHHHHHT-TCC-----EEEE------------EEEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEecC----CCCEEEEEeCCHHHHHHHHHHc-CCe-----Eeee------------eEEEE
Confidence 3566777777763 5555442211 1133223467777777777743 211 1110 01222
Q ss_pred cCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHH
Q 017119 117 GNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEA 173 (377)
Q Consensus 117 ~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~ 173 (377)
+--+..-.-.++.+++.+.|--+....... ...+..+.+.+++.+.|.+++..
T Consensus 78 ~~~d~pGvla~i~~~L~~~~InI~~~~~~~----~~~~~~~~i~~~d~~~A~~~L~~ 130 (144)
T 2f06_A 78 SCPNVPGALAKVLGFLSAEGVFIEYMYSFA----NNNVANVVIRPSNMDKCIEVLKE 130 (144)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCEEEEEEEE----ETTEEEEEEEESCHHHHHHHHHH
T ss_pred EeCCCCcHHHHHHHHHHHCCCCEEEEEEEc----cCCcEEEEEEeCCHHHHHHHHHH
Confidence 222222334567777777775443323221 12356677889888888888876
No 461
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=25.34 E-value=1.4e+02 Score=19.05 Aligned_cols=56 Identities=13% Similarity=0.049 Sum_probs=38.2
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC----HHHHHHHHHHh
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS----EEDADYAIKVL 86 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~e~A~~A~~~l 86 (377)
.++.|.++....-...|.+.+.+...|..+.+ ....+.+.|+|.. .++..++++.+
T Consensus 5 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v------~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCVANIERNLRREEGIYSILV------ALMAGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHHHHHHHHHTTSSSEEECCC------BTTTTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHHHHHHHHHhcCCCeEEEEE------EecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 36788888877777889999998877777665 2234567788863 34455555533
No 462
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=25.28 E-value=71 Score=22.77 Aligned_cols=57 Identities=19% Similarity=0.125 Sum_probs=33.3
Q ss_pred CcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeC-CHHHHHHHHHHHcCc
Q 017119 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYD-SFEASDAAIEAMNGQ 177 (377)
Q Consensus 121 ~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~-~~~~A~~a~~~l~~~ 177 (377)
....+-.|.++..+||..++.+.=-.+.-.+..-|.-+|++. +.++.++|++.|+..
T Consensus 33 ~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 90 (101)
T 2qrr_A 33 ATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLREN 90 (101)
T ss_dssp TSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred CCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHHc
Confidence 344566788888888865432211112223445566777775 355677888877543
No 463
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=25.17 E-value=2.5e+02 Score=23.93 Aligned_cols=118 Identities=16% Similarity=0.188 Sum_probs=58.1
Q ss_pred eEEEcCCCcC--CCHHHHHHHHHhcCCeE----EEEEeccCCCCCccceEEEEeC----CHHHHHH-HHHHhcCcccCCc
Q 017119 26 TAYVGNLDPQ--VTEELLWELFVQAGPVV----NVYVPKDRVTNLHQGYGFVEFR----SEEDADY-AIKVLNMIKLYGK 94 (377)
Q Consensus 26 ~l~v~nLp~~--~te~~L~~~f~~~G~i~----~v~i~~~~~~~~~~g~afV~f~----~~e~A~~-A~~~l~~~~~~g~ 94 (377)
.|+|--|..+ =|..+|+.+|.++|--. +|.++.+ ..|.|.|. ++++... ||+ ..-..
T Consensus 96 aiiVe~lTDN~nRt~~~vR~~f~K~GG~lg~~GsV~~mF~-------~kG~i~~~~~~~~ed~~le~ale-aGAeD---- 163 (249)
T 1lfp_A 96 AVMVLATTDNRNRTTSEVRHVFTKHGGNLGASGCVSYLFE-------RKGYIEVPAKEVSEEELLEKAIE-VGAED---- 163 (249)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHTTCEECCTTSSGGGEE-------EEEEEEEEGGGSCHHHHHHHHHH-HTCSE----
T ss_pred EEEEEEecCCHHHHHHHHHHHHhhcCceecCCCchhhhhh-------eeeEEEEcCCCCCHHHHHHHHHh-cCCce----
Confidence 4455545333 46779999999997521 1222222 24667776 5554433 444 11111
Q ss_pred eeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHHHH
Q 017119 95 PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAM 174 (377)
Q Consensus 95 ~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~~l 174 (377)
| . . .+....||. ....-..+++.++..|..+....+..... ..|++.+.+++++..+.+
T Consensus 164 -v--~--~-----e~~~~~v~t----~p~~~~~V~~aL~~~g~~~~~aei~~~P~-------~~v~l~~~e~~~~~~kli 222 (249)
T 1lfp_A 164 -V--Q--P-----GEEVHIIYT----VPEELYEVKENLEKLGVPIEKAQITWKPI-------STVQINDEETAQKVIKLL 222 (249)
T ss_dssp -E--E--C-----CSSEEEEEE----CGGGHHHHHHHHHTTTCCCSEEEEEEEES-------SCEECCCHHHHHHHHHHH
T ss_pred -e--e--c-----CCceEEEEE----CHHHHHHHHHHHHHcCCCeeeeeeEECCC-------CceecCCHHHHHHHHHHH
Confidence 1 1 0 011111222 22334678888887774433333332222 137776677777666655
Q ss_pred cC
Q 017119 175 NG 176 (377)
Q Consensus 175 ~~ 176 (377)
+.
T Consensus 223 d~ 224 (249)
T 1lfp_A 223 NA 224 (249)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 464
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=25.03 E-value=1.2e+02 Score=20.38 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=35.7
Q ss_pred EeCCHHHHHHHHHHhcCcccCCceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcC
Q 017119 72 EFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136 (377)
Q Consensus 72 ~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G 136 (377)
.|.+.+.|++....|... |....|.. ...-.+|+||-+.....-+.+.+.+...|
T Consensus 16 aF~~~~~A~~l~~~L~~~---G~~a~i~~-------~~~~yRV~vGpf~s~~~A~~~~~~L~~~g 70 (81)
T 1uta_A 16 SFRGAEQAETVRAQLAFE---GFDSKITT-------NNGWNRVVIGPVKGKENADSTLNRLKMAG 70 (81)
T ss_dssp EESCHHHHHHHHHHHHHH---TCCEEEEE-------CSSSEEEEESSCBTTTHHHHHHHHHHHHC
T ss_pred EcCCHHHHHHHHHHHHhC---CCCeEEEe-------CCcEEEEEECCcCCHHHHHHHHHHHHHcC
Confidence 689999999998877643 33344431 12235799998766555556666666555
No 465
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=24.62 E-value=2.7e+02 Score=22.17 Aligned_cols=136 Identities=13% Similarity=0.045 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC----HHHHHHHHHHhcCcccCCceeEE
Q 017119 23 QDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS----EEDADYAIKVLNMIKLYGKPIRV 98 (377)
Q Consensus 23 ~~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~e~A~~A~~~l~~~~~~g~~i~v 98 (377)
...++.|.++....-...|.+.+.+.-.|..+.+-. ..+.+.|+|.. .++..++++.+ ...+..+.+
T Consensus 20 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~------~~~~~~v~~~~~~~~~~~i~~~i~~~---~~gg~~v~~ 90 (202)
T 2rop_A 20 VTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSL------ENKTAQVKYDPSCTSPVALQRAIEAL---PPGNFKVSL 90 (202)
T ss_dssp CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEET------TTTEEEEEECTTTCCHHHHHHHHTTS---SSSCSEEEC
T ss_pred EEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEe------cCCEEEEEECCCCCCHHHHHHHHHHh---ccCCeEEEe
Confidence 344688999887777778999999887788877632 33467788864 33444444422 111111110
Q ss_pred ee---------------cC-----cCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEE
Q 017119 99 NK---------------AS-----QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGF 158 (377)
Q Consensus 99 ~~---------------~~-----~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~af 158 (377)
.. .. ..........++.|.++.-......|.+.+...-.| ..+.+-. ..+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV-~~~~v~~------~~~~~~ 163 (202)
T 2rop_A 91 PDGAEGSGTDHRSSSSHSPGSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGV-QQISVSL------AEGTAT 163 (202)
T ss_dssp -----------------------------CCEEEEEEESCCCSTHHHHHHHHHGGGSSSE-EEEEEET------TTTEEE
T ss_pred ccccccccccccccccccccccccccccccceEEEEEECCccCHHHHHHHHHHHHcCCCe-EEEEEEc------cCCEEE
Confidence 00 00 000000112358888888887888899999887665 3334422 234577
Q ss_pred EEeCC----HHHHHHHHHHH
Q 017119 159 ISYDS----FEASDAAIEAM 174 (377)
Q Consensus 159 V~f~~----~~~A~~a~~~l 174 (377)
|.|.. .++..++++.+
T Consensus 164 v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 164 VLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEECTTTCCHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHc
Confidence 88853 34445555544
No 466
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=24.24 E-value=1.4e+02 Score=18.98 Aligned_cols=57 Identities=11% Similarity=0.031 Sum_probs=40.5
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC----HHHHHHHHHHh
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS----EEDADYAIKVL 86 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~e~A~~A~~~l 86 (377)
..++.|.++....-...|++.+.+...|..+.+-. ..+.+.|+|.. .++..++++.+
T Consensus 9 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~------~~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSL------EEKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEG------GGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEc------cCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 45788999988888888999999887777777633 33567788864 34555556543
No 467
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=23.85 E-value=3.2e+02 Score=22.86 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=33.3
Q ss_pred CCeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCc
Q 017119 24 DATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMI 89 (377)
Q Consensus 24 ~~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~ 89 (377)
-.-|+|.....+..++.++.+ .+.|. --|.+-.+ ......+.+|.+.+.+.+..|.+.|...
T Consensus 70 vdgiii~~~~~~~~~~~~~~~-~~~~i-PvV~~~~~--~~~~~~~~~V~~D~~~~g~~a~~~l~~~ 131 (304)
T 3gbv_A 70 PDGVMFAPTVPQYTKGFTDAL-NELGI-PYIYIDSQ--IKDAPPLAFFGQNSHQSGYFAARMLMLL 131 (304)
T ss_dssp CSEEEECCSSGGGTHHHHHHH-HHHTC-CEEEESSC--CTTSCCSEEEECCHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCChHHHHHHHHHH-HHCCC-eEEEEeCC--CCCCCceEEEecChHHHHHHHHHHHHHH
Confidence 345555555444444444444 33342 22222221 1222347899999999988888877543
No 468
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.18 E-value=40 Score=22.20 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=9.4
Q ss_pred ccceEEEEeCCH
Q 017119 65 HQGYGFVEFRSE 76 (377)
Q Consensus 65 ~~g~afV~f~~~ 76 (377)
.++.|||.|+|.
T Consensus 36 ~~~~ClV~FeD~ 47 (68)
T 2e5p_A 36 AREVCLVQFEDD 47 (68)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 466899999873
No 469
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=23.17 E-value=52 Score=25.28 Aligned_cols=46 Identities=30% Similarity=0.501 Sum_probs=23.5
Q ss_pred cCCHHHHHHHHhh-cCCeeecceeecCCCC----CCCcceEEEEeCCHHHHH
Q 017119 122 DVDEKLLYDTFSA-FGVIVTNPKIMRDPDT----GNSRGFGFISYDSFEASD 168 (377)
Q Consensus 122 ~~~~~~l~~~f~~-~G~vv~~~~i~~d~~~----~~~kg~afV~f~~~~~A~ 168 (377)
..+..||++.+.. |+.--.++.++....| |.+.|||.| |+|.+.|.
T Consensus 39 Tpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~I-Yds~d~aK 89 (138)
T 3iz6_U 39 NVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLI-YDNLDAAK 89 (138)
T ss_dssp CCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCC-SSCHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHH
Confidence 4667888887754 4430223333333332 445556544 55655544
No 470
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=22.95 E-value=2.6e+02 Score=22.43 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=49.0
Q ss_pred CCeEEEcCCCcC------------CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc-
Q 017119 24 DATAYVGNLDPQ------------VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK- 90 (377)
Q Consensus 24 ~~~l~v~nLp~~------------~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~- 90 (377)
...|.|.|..++ .+.+.|+++|+.+|- +|.+..|. +.++..+.++.+....
T Consensus 45 G~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF--~V~~~~dl--------------t~~em~~~l~~~~~~dh 108 (179)
T 3p45_A 45 GIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGF--EVKCFNDL--------------KAEELLLKIHEVSTVSH 108 (179)
T ss_dssp CEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTC--EEEEEESC--------------CHHHHHHHHHHHHTSCC
T ss_pred CEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEEEeCC--------------CHHHHHHHHHHHhhhhc
Confidence 347888887655 366779999999985 34443332 5566666666554332
Q ss_pred -cCCceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHh
Q 017119 91 -LYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFS 133 (377)
Q Consensus 91 -~~g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~ 133 (377)
-.+.-+.|-.+.... ..||-. +..+.-++|+++|.
T Consensus 109 ~~~dc~vvvilSHG~~------g~I~g~--D~~v~l~~I~~~F~ 144 (179)
T 3p45_A 109 ADADCFVCVFLSHGEG------NHIYAY--DAKIEIQTLTGLFK 144 (179)
T ss_dssp TTBSCEEEEEESCEET------TEEECS--SSEEEHHHHHGGGS
T ss_pred CCCCEEEEEEeccCCC------CEEEEE--CCEEEHHHHHHhcc
Confidence 223444444443332 234433 33366677777775
No 471
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=22.54 E-value=3e+02 Score=24.28 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=19.4
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHHHHhc
Q 017119 22 NQDATAYVGNLDPQVTEELLWELFVQA 48 (377)
Q Consensus 22 ~~~~~l~v~nLp~~~te~~L~~~f~~~ 48 (377)
+....+|+|++...-.-+.|.+.|...
T Consensus 210 ~~~~i~~~G~~~~~Kg~~~li~a~~~l 236 (394)
T 2jjm_A 210 SEKILIHISNFRKVKRVQDVVQAFAKI 236 (394)
T ss_dssp --CEEEEECCCCGGGTHHHHHHHHHHH
T ss_pred CCeEEEEeeccccccCHHHHHHHHHHH
Confidence 445688999998777777777777654
No 472
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=22.34 E-value=55 Score=25.60 Aligned_cols=56 Identities=9% Similarity=0.122 Sum_probs=34.7
Q ss_pred EEEcCCCCcCCHHHHHHHHhhc-CCeeecceeecCCCCCCCcceEEEEeCCHHHHHHHHH
Q 017119 114 LFIGNLDPDVDEKLLYDTFSAF-GVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIE 172 (377)
Q Consensus 114 l~V~nl~~~~~~~~l~~~f~~~-G~vv~~~~i~~d~~~~~~kg~afV~f~~~~~A~~a~~ 172 (377)
.|+-.++...+..+|+++++.+ +.-|..|..+... .|. --|||.+....+|.....
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~-~g~--KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP-DGK--KKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECT-TSS--EEEEEEECTTSCHHHHHG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC-CCc--eEEEEEcCCCCcHHHHHH
Confidence 3333455677788999888864 4435566555432 222 248999988877766543
No 473
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=22.05 E-value=3.3e+02 Score=23.23 Aligned_cols=80 Identities=14% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCccccC--CCCeEEEcCC
Q 017119 42 WELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLD--VGANLFIGNL 119 (377)
Q Consensus 42 ~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~--~~~~l~V~nl 119 (377)
..+.+..+.|..|.+ +.+.++.+.+.+. +..+.+...+-.+.... ....+.|+|+
T Consensus 62 ~~L~~~~~~V~avEi------------------d~~~~~~l~~~~~-----~~~v~vi~~D~l~~~~~~~~~~~~iv~Nl 118 (271)
T 3fut_A 62 RALLEAGAEVTAIEK------------------DLRLRPVLEETLS-----GLPVRLVFQDALLYPWEEVPQGSLLVANL 118 (271)
T ss_dssp HHHHHTTCCEEEEES------------------CGGGHHHHHHHTT-----TSSEEEEESCGGGSCGGGSCTTEEEEEEE
T ss_pred HHHHHcCCEEEEEEC------------------CHHHHHHHHHhcC-----CCCEEEEECChhhCChhhccCccEEEecC
Q ss_pred CCcCCHHHHHHHHhhcCCeeecceee
Q 017119 120 DPDVDEKLLYDTFSAFGVIVTNPKIM 145 (377)
Q Consensus 120 ~~~~~~~~l~~~f~~~G~vv~~~~i~ 145 (377)
++.++...|.++++. ..+...+.++
T Consensus 119 Py~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 119 PYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp CSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred cccccHHHHHHHhcC-CCCCEEEEEe
No 474
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=21.73 E-value=41 Score=27.50 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc
Q 017119 36 VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 36 ~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~ 90 (377)
+.+++|.+.++.|..+.- + .+.-+.--||++.+.++.+..+..|.|+.
T Consensus 65 ~~~~~I~~Ei~aYnpLiP-----~--~~~l~ATl~IE~~d~~er~~~L~~L~Gie 112 (194)
T 3fjv_A 65 FDEDGIQAELDAYLPLVP-----D--GSNLKATLQIEYENETQRRAALARLVGIE 112 (194)
T ss_dssp CSHHHHHHHHHHHGGGCC-----C--SSEEEEEEEECCSSHHHHHHHHHHTTTGG
T ss_pred CCHHHHHHHHHHhcccCC-----C--CCcEEEEEEEEcCCHHHHHHHHHHhcCcc
Confidence 356667666766654211 1 12223457899999999999999998753
No 475
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=21.57 E-value=3.1e+02 Score=23.26 Aligned_cols=129 Identities=10% Similarity=0.076 Sum_probs=64.0
Q ss_pred CCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCC------ccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCcCc
Q 017119 32 LDPQVTEELLWELFVQAGPVVNVYVPKDRVTNL------HQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDK 105 (377)
Q Consensus 32 Lp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~------~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~~~ 105 (377)
|+..++++||+.+-.....-..|..+.++.+.. .-.+|+|.-.-.++..+.++..-+.+ .++...+...-
T Consensus 75 vp~~~~d~El~~l~~~l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVe----V~~~tIags~l 150 (248)
T 4a18_J 75 VPNTCNDNELRNIRNSLPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVE----VFRTTIANNVL 150 (248)
T ss_dssp ECTTCCHHHHHHHHHHSCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCE----EEECCBTTBSC
T ss_pred eCCcCCHHHHHHHHhhCCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCc----EEEEEcCCcce
Confidence 356699999887754443333455555554321 22378887776666666666332222 11111111110
Q ss_pred ---cccCCCCeEEEcCCCCcCCHHHHHHHHhhcCCeeecc------------eeecCCCCCCCcceEEEEeCCHHHHHHH
Q 017119 106 ---KSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNP------------KIMRDPDTGNSRGFGFISYDSFEASDAA 170 (377)
Q Consensus 106 ---~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~vv~~~------------~i~~d~~~~~~kg~afV~f~~~~~A~~a 170 (377)
....+++-+.| ...++++|++.+-+-++.-+..- .+..| ..|||..++.....+.
T Consensus 151 VGs~~v~Nn~G~LV---hp~~s~eEl~~L~~~l~V~v~~gTvN~G~~~VGsgivaNd-------~GalVg~~tT~~El~~ 220 (248)
T 4a18_J 151 VGTYCVINNRGGLV---HPLASVEELDELANLLQIPLCAGTINRGSDVIGAGLVVND-------WAAFCGLDTTSTEISV 220 (248)
T ss_dssp HHHHEEECSSCEEE---CTTCCHHHHHHHHHHHTSCEEECCBTTTBSCHHHHEEEET-------TEEEEETTCCHHHHHH
T ss_pred eEEEEEEeCCeEEE---CCCCCHHHHHHHHHHhCCceEEEeecCCCccceEEEEEeC-------CeEEECCCCCHHHHHH
Confidence 00001112333 45677888777665554332111 11111 1378888777766666
Q ss_pred HHHH
Q 017119 171 IEAM 174 (377)
Q Consensus 171 ~~~l 174 (377)
++..
T Consensus 221 Ie~~ 224 (248)
T 4a18_J 221 VENI 224 (248)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 476
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=21.55 E-value=1.4e+02 Score=21.17 Aligned_cols=63 Identities=17% Similarity=0.141 Sum_probs=40.0
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEec-cCCCCCccceEEEEeCC-HHHHHHHHHHhcC
Q 017119 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPK-DRVTNLHQGYGFVEFRS-EEDADYAIKVLNM 88 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~-~~~~~~~~g~afV~f~~-~e~A~~A~~~l~~ 88 (377)
.|.|.-......+..|.++.++||--.+|..-. +...+..-|+-+|++.. .++.++|++.|+.
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 89 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRE 89 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 566666666778888999999998633333211 22224455777777764 4556778876654
No 477
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=21.48 E-value=60 Score=23.12 Aligned_cols=66 Identities=12% Similarity=-0.000 Sum_probs=0.0
Q ss_pred EEEcCCCCcCCHHHHHHHHhhcCCeeecceeecCCCCCCCcceEEEEeC-CHHHHHHHHHHHcCcee
Q 017119 114 LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYD-SFEASDAAIEAMNGQYL 179 (377)
Q Consensus 114 l~V~nl~~~~~~~~l~~~f~~~G~vv~~~~i~~d~~~~~~kg~afV~f~-~~~~A~~a~~~l~~~~~ 179 (377)
|.|.-......+-.|.++..+||..+..+.=-.+.-.+..-|.-+|++. +.++.++|++.|....+
T Consensus 26 v~l~f~g~~~~~pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~~v 92 (100)
T 2qsw_A 26 VRLLFHGEQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLGEEQNILAAIEGLRKLRV 92 (100)
T ss_dssp EEEEEESCSCSSCHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHTTC
T ss_pred EEEEEcCCCcCchHHHHHHHHhCCCEEEEEeeceEcCCeeEEEEEEEEECCHHHHHHHHHHHHHcCC
No 478
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=21.45 E-value=3.9e+02 Score=22.96 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=50.9
Q ss_pred CCCeEEEcCCCcC------------CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCc-
Q 017119 23 QDATAYVGNLDPQ------------VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMI- 89 (377)
Q Consensus 23 ~~~~l~v~nLp~~------------~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~- 89 (377)
....|.|+|..++ .+.+.|.+.|++.|= +|.+..|. +.++-.++++.+...
T Consensus 21 rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF--~V~~~~dl--------------t~~em~~~l~~~~~~~ 84 (278)
T 3od5_A 21 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGF--EVKCFNDL--------------KAEELLLKIHEVSTVS 84 (278)
T ss_dssp CCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTC--EEEEEESC--------------CHHHHHHHHHHHHHSC
T ss_pred cCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCC--EEEEecCC--------------CHHHHHHHHHHHHhhc
Confidence 3457899987654 456678999999985 34444442 556666666655332
Q ss_pred -ccCCceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhh
Q 017119 90 -KLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSA 134 (377)
Q Consensus 90 -~~~g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~ 134 (377)
.-.+..+.+-.+-... ..|| ..+..+.-++|.++|..
T Consensus 85 h~~~d~~vv~ilSHG~~------g~i~--g~D~~v~l~~I~~~f~~ 122 (278)
T 3od5_A 85 HADADCFVCVFLSHGEG------NHIY--AYDAKIEIQTLTGLFKG 122 (278)
T ss_dssp CTTBSCEEEEEESCEET------TEEE--CSSSEEEHHHHHHTTST
T ss_pred ccCCCEEEEEEECCCCC------CEEE--EeCCeEEHHHHHHHhcc
Confidence 2223444443333321 2333 33445777888888863
No 479
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=21.35 E-value=46 Score=23.83 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=34.0
Q ss_pred eEEEEeCCHHHHHHHHHH---hcCcccCCceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHhhcC
Q 017119 68 YGFVEFRSEEDADYAIKV---LNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136 (377)
Q Consensus 68 ~afV~f~~~e~A~~A~~~---l~~~~~~g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G 136 (377)
|+++.|....++.+-++. ++...+.--.++++. ...=.++|| |..+++++++..+.++|.
T Consensus 7 Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e~-------Mr~YE~m~I--l~P~l~ee~~~~~ve~~~ 69 (96)
T 2kjw_A 7 FLWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTT-------PGRYEVNIV--LNPNLDQSQLALEKEIIQ 69 (96)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECSS-------SSCEEEEEE--CCSSCCHHHHHHHHHHHH
T ss_pred EEEEEeecChhHHHHHHHHhccchhhhhhhheehhh-------hhhhheeee--eCCCCCHHHHHHHHHHHH
Confidence 788999888777666652 233333222333321 111235776 556778888776666553
No 480
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=21.34 E-value=1.6e+02 Score=18.44 Aligned_cols=54 Identities=11% Similarity=0.011 Sum_probs=37.5
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCC----HHHHHHHHHH
Q 017119 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRS----EEDADYAIKV 85 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~----~e~A~~A~~~ 85 (377)
++.|.++....-...|++.+.+...|..+.+-. ..+.+.|+|.. .++..++++.
T Consensus 5 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~------~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (75)
T 3cjk_B 5 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSL------EEKNATIIYDPKLQTPKTLQEAIDD 62 (75)
T ss_dssp EEEECCCCSHHHHHHHHHHHHTSTTEEEEEEET------TTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEe------cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 577888877666678889999888888887733 33567788863 3445555553
No 481
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=21.24 E-value=1.2e+02 Score=23.79 Aligned_cols=35 Identities=29% Similarity=0.283 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhcCCe---EEEEEeccCCCCCccceEE
Q 017119 36 VTEELLWELFVQAGPV---VNVYVPKDRVTNLHQGYGF 70 (377)
Q Consensus 36 ~te~~L~~~f~~~G~i---~~v~i~~~~~~~~~~g~af 70 (377)
.|+++|+++-++.|.+ .++++..+..+|..+.+||
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv 40 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGY 40 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEE
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEE
No 482
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=21.11 E-value=1.4e+02 Score=20.99 Aligned_cols=45 Identities=11% Similarity=0.078 Sum_probs=25.6
Q ss_pred HHHHHhhcCCeeecceeecCCCCCC--CcceEEEEeCCHHHHHHHHHH
Q 017119 128 LYDTFSAFGVIVTNPKIMRDPDTGN--SRGFGFISYDSFEASDAAIEA 173 (377)
Q Consensus 128 l~~~f~~~G~vv~~~~i~~d~~~~~--~kg~afV~f~~~~~A~~a~~~ 173 (377)
...+|.+||..+...-.... ..|. .....+|+|.|.+.|..+.+.
T Consensus 26 ~~~~l~~~GG~~l~rg~~~~-lEG~~~~~~~viieFps~~aa~a~y~S 72 (94)
T 3lo3_A 26 VASTLAKYSGEVLVKGSVEQ-LHGKFEHKAQVILEFPSREDAYNWYHS 72 (94)
T ss_dssp HHHHHHTTTCEEEEEEECEE-EESCCCCSEEEEEEESSHHHHHHHHHS
T ss_pred HHHHHHHcCCEEEEEccccc-ccCCCCCCeEEEEECCCHHHHHHHHCC
Confidence 44566777654211111111 1122 345678999999999887763
No 483
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=21.04 E-value=1.6e+02 Score=18.18 Aligned_cols=54 Identities=9% Similarity=0.016 Sum_probs=35.8
Q ss_pred eEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeC---CHHHHHHHHHH
Q 017119 26 TAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFR---SEEDADYAIKV 85 (377)
Q Consensus 26 ~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~---~~e~A~~A~~~ 85 (377)
++.|.++....-...|++.+.+...|.++.+- ...+.+.|+|. +.+...++++.
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~------~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDIS------LVTNECQVTYDNEVTADSIKEIIED 61 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCB------TTTTEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEE------ecCCEEEEEECCCCCHHHHHHHHHH
Confidence 57788887666667788888888778777662 23456778875 33444555553
No 484
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.91 E-value=47 Score=24.28 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=22.9
Q ss_pred CCcceEEEEeCCHHHHHHHHHHHcCce
Q 017119 152 NSRGFGFISYDSFEASDAAIEAMNGQY 178 (377)
Q Consensus 152 ~~kg~afV~f~~~~~A~~a~~~l~~~~ 178 (377)
..|||.||+=.+..+..+|++.+.+..
T Consensus 49 ~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 49 HVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp TCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 369999999999999999998776544
No 485
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=20.59 E-value=3.1e+02 Score=23.51 Aligned_cols=93 Identities=15% Similarity=0.062 Sum_probs=49.9
Q ss_pred CCCeEEEcCCCcC------------CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcc
Q 017119 23 QDATAYVGNLDPQ------------VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIK 90 (377)
Q Consensus 23 ~~~~l~v~nLp~~------------~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~ 90 (377)
....|.|+|..++ .+.+.|.+.|++.|- +|.+..|. +.++-+++++.+....
T Consensus 21 rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF--~V~~~~dl--------------t~~em~~~l~~~~~~~ 84 (277)
T 1nw9_B 21 CGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHF--MVEVKGDL--------------TAKKMVLALLELARQD 84 (277)
T ss_dssp CEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTE--EEEEEESC--------------CHHHHHHHHHHHHHSC
T ss_pred ccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCC--EEEEEcCC--------------CHHHHHHHHHHHHHhh
Confidence 3458888888664 266678999999883 45554443 4566666666553322
Q ss_pred --cCCceeEEeecCcCcccc-CCCCeEEEcCCCC-cCCHHHHHHHHh
Q 017119 91 --LYGKPIRVNKASQDKKSL-DVGANLFIGNLDP-DVDEKLLYDTFS 133 (377)
Q Consensus 91 --~~g~~i~v~~~~~~~~~~-~~~~~l~V~nl~~-~~~~~~l~~~f~ 133 (377)
-.+..+.+-.+....... .....|| ..+. .+.-++|.++|.
T Consensus 85 h~~~D~~vv~ilSHG~~~~~~~~~g~iy--~~D~~~v~l~~i~~~f~ 129 (277)
T 1nw9_B 85 HGALDCCVVVILSHGCQASHLQFPGAVY--GTDGCPVSVEKIVNIFN 129 (277)
T ss_dssp CTTCSEEEEEEEEEEECCCCSSSCCEEE--CTTSCEEEHHHHHHTTC
T ss_pred cccCCeEEEEEeCCCCccccccCCCcEE--ecCCceeeHHHHHHHhc
Confidence 223333333332221110 0113455 2233 356677888885
No 486
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=20.57 E-value=3e+02 Score=21.59 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=24.3
Q ss_pred ccceEEEEeCCHHHHHHHHHHhcCcccCCceeEEeecCc
Q 017119 65 HQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ 103 (377)
Q Consensus 65 ~~g~afV~f~~~e~A~~A~~~l~~~~~~g~~i~v~~~~~ 103 (377)
...-.||.|++.++|.++++ .+..+ ..|.+.....
T Consensus 77 ~~~~v~il~k~p~d~~~lv~--~g~~i--~~vNvG~m~~ 111 (163)
T 3p3v_A 77 PAQSIFIVVKDLQDAKLLVE--GGVPI--TEINIGNIHK 111 (163)
T ss_dssp TTCEEEEEESSHHHHHHHHH--TTCCC--CEEEEEEBCC
T ss_pred CCceEEEEECCHHHHHHHHH--cCCCC--CEEEECCCcC
Confidence 44578999999999999988 44443 3555544433
No 487
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=20.53 E-value=2.7e+02 Score=22.10 Aligned_cols=85 Identities=15% Similarity=0.048 Sum_probs=45.6
Q ss_pred CeEEEcCCCcC------------CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCcccC
Q 017119 25 ATAYVGNLDPQ------------VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLY 92 (377)
Q Consensus 25 ~~l~v~nLp~~------------~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~~ 92 (377)
..|.|.|..++ .+.+.|+++|+.+|- +|.+..|. +.++..+.++.+......
T Consensus 46 ~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF--~V~v~~dl--------------t~~em~~~l~~~s~~dh~ 109 (173)
T 2ql9_A 46 KCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGF--DVIVYNDC--------------SCAKMQDLLKKASEEDHT 109 (173)
T ss_dssp EEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTE--EEEEEESC--------------CHHHHHHHHHHHHTSCCT
T ss_pred EEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCC--EEEEEeCC--------------CHHHHHHHHHHHHHhhcc
Confidence 46777776443 445668889999884 44444432 556666666665443322
Q ss_pred --CceeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHh
Q 017119 93 --GKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFS 133 (377)
Q Consensus 93 --g~~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~ 133 (377)
+.-+.+-.+.... ..||-.+ ..+.-++|+.+|.
T Consensus 110 ~~dc~vvvilSHG~~------g~I~g~D--~~~~i~~I~~~F~ 144 (173)
T 2ql9_A 110 NAACFACILLSHGEE------NVIYGKD--GVTPIKDLTAHFR 144 (173)
T ss_dssp TEEEEEEEEESCEET------TEEEETT--EEEEHHHHHGGGS
T ss_pred CCCeEEEeecCCCCC------CEEEEcC--CcEEHHHHHHHcC
Confidence 2333333333222 2444432 2355567777774
No 488
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=20.44 E-value=2.1e+02 Score=25.17 Aligned_cols=87 Identities=18% Similarity=0.067 Sum_probs=47.0
Q ss_pred CCeEEEcCCCcC------------CCHHHHHHHHHhcCCeEEEEEeccCCCCCccceEEEEeCCHHHHHHHHHHhcCccc
Q 017119 24 DATAYVGNLDPQ------------VTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKL 91 (377)
Q Consensus 24 ~~~l~v~nLp~~------------~te~~L~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~e~A~~A~~~l~~~~~ 91 (377)
...|.|+|..++ .+.+.|.+.|+++|= +|.+..|. +.++..++++.+.....
T Consensus 70 g~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF--~V~~~~dl--------------t~~em~~~l~~~~~~~h 133 (305)
T 1f1j_A 70 GKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGF--DVIVYNDC--------------SCAKMQDLLKKASEEDH 133 (305)
T ss_dssp EEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTE--EEEEEESC--------------CHHHHHHHHHHHHHSCG
T ss_pred CEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCC--EEEEecCc--------------CHHHHHHHHHHHHHhhc
Confidence 347888887553 345568888998883 44554442 55666677765543322
Q ss_pred CCc-eeEEeecCcCccccCCCCeEEEcCCCCcCCHHHHHHHHh
Q 017119 92 YGK-PIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFS 133 (377)
Q Consensus 92 ~g~-~i~v~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~ 133 (377)
.+. .+.|-+...... . +|...+..+.-++|++.|.
T Consensus 134 ~~~d~~vv~ilsHG~~-----~--~i~g~D~~v~l~~I~~~f~ 169 (305)
T 1f1j_A 134 TNAACFACILLSHGEE-----N--VIYGKDGVTPIKDLTAHFR 169 (305)
T ss_dssp GGEEEEEEEEESCEET-----T--EEECSSSEEEHHHHHHTTS
T ss_pred CCCCEEEEEEecCCCC-----C--eEEecCCeEEHHHHHHHhh
Confidence 222 122222222211 1 3334444566678888875
No 489
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=20.31 E-value=69 Score=23.16 Aligned_cols=65 Identities=18% Similarity=0.107 Sum_probs=39.6
Q ss_pred CeEEEcCCCcCCCHHHHHHHHHhcCCeEEEEEe-ccCCCCCccceEEEEeCC-HHHHHHHHHHhcCc
Q 017119 25 ATAYVGNLDPQVTEELLWELFVQAGPVVNVYVP-KDRVTNLHQGYGFVEFRS-EEDADYAIKVLNMI 89 (377)
Q Consensus 25 ~~l~v~nLp~~~te~~L~~~f~~~G~i~~v~i~-~~~~~~~~~g~afV~f~~-~e~A~~A~~~l~~~ 89 (377)
+.|.|.-....+.+-.|.++.++||.-.+|..- .+...+..-|.-+|++.. .++.++|++.|...
T Consensus 22 ~lvrL~f~g~~~~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 22 PMLRLEFTGQSVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp EEEEEEEEEECTTCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred eEEEEEEcCCccChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 344444444556777899999999864333321 122234566777788864 55677888877643
Done!