Query 017121
Match_columns 377
No_of_seqs 151 out of 167
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:47:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017121.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017121hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2417 Predicted G-protein co 100.0 6E-120 1E-124 874.7 23.3 372 1-376 91-462 (462)
2 PF12430 ABA_GPCR: Abscisic ac 100.0 2E-55 4.3E-60 406.2 18.2 179 191-369 1-196 (196)
3 PF12537 DUF3735: Protein of u 99.9 1.6E-26 3.5E-31 181.4 3.9 71 50-120 1-72 (72)
4 PF04791 LMBR1: LMBR1-like mem 94.9 0.55 1.2E-05 48.7 13.8 32 58-89 161-192 (471)
5 PRK11546 zraP zinc resistance 91.0 1.9 4.1E-05 38.4 9.1 34 157-193 86-119 (143)
6 TIGR02338 gimC_beta prefoldin, 68.3 65 0.0014 26.9 9.7 95 98-192 8-106 (110)
7 PF01920 Prefoldin_2: Prefoldi 60.7 87 0.0019 25.2 9.0 31 160-190 69-99 (106)
8 KOG0971 Microtubule-associated 56.9 68 0.0015 36.7 9.6 102 95-196 1014-1128(1243)
9 PF05082 Rop-like: Rop-like; 55.6 26 0.00057 27.3 4.6 29 160-188 2-30 (66)
10 KOG2019 Metalloendoprotease HM 55.4 53 0.0012 36.6 8.4 107 72-185 353-478 (998)
11 PF10805 DUF2730: Protein of u 54.9 1.1E+02 0.0023 25.7 8.6 30 91-127 30-59 (106)
12 PRK10803 tol-pal system protei 53.8 1.4E+02 0.0031 28.9 10.5 65 95-188 39-103 (263)
13 PF03350 UPF0114: Uncharacteri 53.3 1.1E+02 0.0023 26.4 8.6 63 257-319 4-71 (124)
14 PF08317 Spc7: Spc7 kinetochor 53.3 1.2E+02 0.0026 30.3 10.2 33 94-126 207-239 (325)
15 cd00632 Prefoldin_beta Prefold 51.2 1.4E+02 0.003 24.6 9.6 33 160-192 70-102 (105)
16 COG3074 Uncharacterized protei 50.6 42 0.00091 26.5 5.0 32 160-191 18-49 (79)
17 PF11932 DUF3450: Protein of u 50.3 2.3E+02 0.005 27.0 11.4 37 159-195 83-119 (251)
18 KOG3231 Predicted assembly/vac 49.5 1.4E+02 0.0029 27.6 8.8 30 163-192 39-73 (208)
19 PF01486 K-box: K-box region; 49.2 92 0.002 25.5 7.3 28 92-119 45-72 (100)
20 PRK11637 AmiB activator; Provi 49.0 1.6E+02 0.0036 30.3 10.7 32 94-125 45-76 (428)
21 PF14389 Lzipper-MIP1: Leucine 46.7 1.1E+02 0.0024 24.8 7.2 24 160-183 61-84 (88)
22 PRK10803 tol-pal system protei 45.6 86 0.0019 30.4 7.6 33 160-192 61-93 (263)
23 PRK09039 hypothetical protein; 45.4 1.6E+02 0.0034 29.8 9.7 24 300-325 285-308 (343)
24 COG3883 Uncharacterized protei 41.3 3.5E+02 0.0075 26.7 10.9 15 160-174 80-94 (265)
25 PRK09343 prefoldin subunit bet 40.6 2.1E+02 0.0045 24.5 8.4 37 160-196 78-114 (121)
26 KOG0709 CREB/ATF family transc 40.1 90 0.0019 33.0 7.0 50 162-211 288-337 (472)
27 PF06005 DUF904: Protein of un 38.9 1.1E+02 0.0025 24.0 5.9 28 160-187 18-45 (72)
28 COG1579 Zn-ribbon protein, pos 37.7 3.9E+02 0.0084 25.9 10.8 38 157-194 86-123 (239)
29 PF14077 WD40_alt: Alternative 37.4 44 0.00095 24.3 3.0 22 160-181 18-39 (48)
30 PF07106 TBPIP: Tat binding pr 36.8 3.1E+02 0.0066 24.4 9.7 31 93-123 69-99 (169)
31 COG4942 Membrane-bound metallo 36.8 3.2E+02 0.0068 28.7 10.3 28 160-187 161-188 (420)
32 KOG0250 DNA repair protein RAD 35.3 3.7E+02 0.008 31.5 11.3 45 159-203 400-445 (1074)
33 PF00170 bZIP_1: bZIP transcri 35.1 1.3E+02 0.0028 22.5 5.6 34 160-193 26-59 (64)
34 PF04111 APG6: Autophagy prote 34.8 4.7E+02 0.01 26.1 11.1 28 160-187 78-105 (314)
35 KOG0994 Extracellular matrix g 34.7 2E+02 0.0044 34.1 9.1 75 91-187 1220-1294(1758)
36 PRK15422 septal ring assembly 34.7 1.4E+02 0.003 24.1 5.8 26 160-185 18-43 (79)
37 KOG4657 Uncharacterized conser 32.3 3.8E+02 0.0083 25.9 9.3 30 158-187 91-120 (246)
38 PRK15396 murein lipoprotein; P 32.0 1.6E+02 0.0034 23.7 5.7 54 64-128 7-64 (78)
39 COG4942 Membrane-bound metallo 31.7 4.3E+02 0.0093 27.8 10.4 21 103-123 38-58 (420)
40 PF14723 SSFA2_C: Sperm-specif 30.4 4.4E+02 0.0096 24.4 9.0 27 166-192 144-170 (179)
41 PF13314 DUF4083: Domain of un 30.3 51 0.0011 25.0 2.5 47 55-112 3-55 (58)
42 TIGR00985 3a0801s04tom mitocho 30.2 19 0.00041 32.3 0.3 31 197-237 6-36 (148)
43 PF04156 IncA: IncA protein; 28.6 4.3E+02 0.0094 23.7 10.5 24 97-120 82-105 (191)
44 PF08232 Striatin: Striatin fa 28.4 1.5E+02 0.0032 26.0 5.5 43 160-202 32-76 (134)
45 PRK09973 putative outer membra 27.9 2E+02 0.0043 23.5 5.8 47 71-128 15-63 (85)
46 PRK10361 DNA recombination pro 27.2 3.2E+02 0.007 29.1 8.7 43 160-202 165-207 (475)
47 PRK15422 septal ring assembly 27.2 3.4E+02 0.0073 21.9 8.6 59 98-192 6-64 (79)
48 COG1704 LemA Uncharacterized c 27.2 4.7E+02 0.01 24.4 8.8 32 160-191 118-152 (185)
49 KOG3584 cAMP response element 27.0 1.2E+02 0.0027 30.2 5.2 33 160-192 312-344 (348)
50 PF11570 E2R135: Coiled-coil r 27.0 4.5E+02 0.0096 23.3 9.8 33 95-127 21-53 (136)
51 KOG2171 Karyopherin (importin) 26.9 77 0.0017 36.8 4.3 62 51-112 732-793 (1075)
52 PF07438 DUF1514: Protein of u 26.5 2E+02 0.0043 22.4 5.2 23 163-185 21-43 (66)
53 smart00787 Spc7 Spc7 kinetocho 26.0 5.8E+02 0.013 25.6 10.0 33 94-126 202-234 (312)
54 PF10779 XhlA: Haemolysin XhlA 25.8 2E+02 0.0044 22.1 5.4 38 165-202 18-55 (71)
55 PF05377 FlaC_arch: Flagella a 25.6 2.2E+02 0.0048 21.4 5.2 32 163-194 3-34 (55)
56 smart00338 BRLZ basic region l 25.5 2.2E+02 0.0048 21.2 5.4 33 160-192 26-58 (65)
57 PF14048 MBD_C: C-terminal dom 25.1 87 0.0019 26.0 3.3 16 93-108 73-88 (96)
58 PF12325 TMF_TATA_bd: TATA ele 25.0 2.1E+02 0.0046 24.7 5.8 35 159-193 29-63 (120)
59 PF00846 Hanta_nucleocap: Hant 25.0 4.8E+02 0.01 27.2 9.1 31 97-127 3-33 (428)
60 PF11932 DUF3450: Protein of u 24.9 6E+02 0.013 24.1 10.5 10 65-74 7-16 (251)
61 KOG1691 emp24/gp25L/p24 family 24.7 1.3E+02 0.0028 28.6 4.8 37 159-195 133-169 (210)
62 PRK10884 SH3 domain-containing 24.5 6E+02 0.013 23.9 9.6 87 95-213 99-189 (206)
63 PF06166 DUF979: Protein of un 24.1 2.4E+02 0.0051 28.4 6.6 65 19-105 25-89 (308)
64 PF08657 DASH_Spc34: DASH comp 23.6 4.2E+02 0.0091 25.9 8.2 78 96-179 180-258 (259)
65 PF03376 Adeno_E3B: Adenovirus 23.4 2.5E+02 0.0054 21.9 5.2 33 255-287 10-42 (67)
66 PF12507 HCMV_UL139: Human Cyt 23.4 70 0.0015 27.8 2.5 44 162-205 46-89 (121)
67 KOG1937 Uncharacterized conser 23.2 4.9E+02 0.011 27.7 8.9 35 159-193 351-385 (521)
68 COG0598 CorA Mg2+ and Co2+ tra 23.2 6.9E+02 0.015 24.7 10.0 27 161-187 221-247 (322)
69 TIGR00967 3a0501s007 preprotei 22.7 85 0.0018 32.5 3.5 43 38-80 327-370 (410)
70 PF04799 Fzo_mitofusin: fzo-li 22.5 2.5E+02 0.0054 25.9 6.0 34 159-192 126-162 (171)
71 KOG4643 Uncharacterized coiled 22.3 3E+02 0.0066 32.1 7.7 29 55-84 138-166 (1195)
72 PF09753 Use1: Membrane fusion 22.1 1.6E+02 0.0035 28.1 5.1 29 164-192 189-217 (251)
73 KOG2577 Transcription factor E 22.0 1.8E+02 0.0039 29.8 5.5 35 158-192 142-176 (354)
74 TIGR02231 conserved hypothetic 21.4 8.3E+02 0.018 25.8 10.7 36 160-195 138-173 (525)
75 PF05667 DUF812: Protein of un 21.0 3.2E+02 0.0068 30.0 7.5 33 161-193 455-487 (594)
76 PF07716 bZIP_2: Basic region 20.4 3E+02 0.0064 19.9 5.1 28 161-188 26-53 (54)
77 PF12325 TMF_TATA_bd: TATA ele 20.2 1.7E+02 0.0037 25.3 4.3 30 96-125 75-104 (120)
78 TIGR03042 PS_II_psbQ_bact phot 20.2 5.9E+02 0.013 22.7 7.7 23 167-189 92-114 (142)
No 1
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-120 Score=874.69 Aligned_cols=372 Identities=54% Similarity=0.924 Sum_probs=354.2
Q ss_pred CchhHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccchhchhhceehhhHHHHHHhhcccccc
Q 017121 1 MLPYYHCYLMLCNSGVRKERAALGAILFLLAFLYAFWRMGIHFPMPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVN 80 (377)
Q Consensus 1 v~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~FwklG~~~p~~~~~~g~~~~e~~l~RvgViGVt~mA~LSGfGAVs 80 (377)
++|+|+||+++++.++++++++++++.+|.+|+|+|||+|||||+|||+||+|++||.+|||||||||+||+||||||||
T Consensus 91 ~ip~Y~~y~ii~~i~v~~k~~~~~s~l~w~~FlYffWkiGdpFPmlSakhGiftieQliSRvgVIGVTlMAvLSGFGAVN 170 (462)
T KOG2417|consen 91 MIPYYHCYLIIRNIGVRRKLALPFTILFWFIFLYFFWKIGDPFPMLSAKHGIFTIEQLISRVGVIGVTLMAVLSGFGAVN 170 (462)
T ss_pred HHHHHhheeeeecccchHHHHhHHHHHHHHHHHHHHHHhCCCCCCCCcccceeeHHHHHhhhhhhhhhHHHHHhccCccC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhccchhhhhccchhhhhhcceeecccCCchhH
Q 017121 81 LPYSYLSLFIREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQ 160 (377)
Q Consensus 81 ~Py~~~~~f~r~V~~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~ 160 (377)
+||+||++|.|||+|.||.++||||.||+||+.+||||+++++-+ ++...+++.++.++|+.|++|..-++.++++.++
T Consensus 171 ~PYsyms~FiR~Vee~di~~lErrL~qtmdmiisKKkk~a~~~l~-~~~l~~e~~~k~pSff~r~w~~~~~~~~~~~~~~ 249 (462)
T KOG2417|consen 171 APYSYMSYFIRPVEETDIIQLERRLAQTMDMIISKKKKMAMAQLE-EKRLQSEKVQKEPSFFRRFWGMFSSSVQDNTLSS 249 (462)
T ss_pred CchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhcccCCcHHHHHHHHHHHHhccccchh
Confidence 999999999999999999999999999999999999999988853 2233444466778999999873334456677788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHhhccceeehhhHHHHHHHHHhhcccCCCCChHHHH
Q 017121 161 DIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKEAGSVDPVTMT 240 (377)
Q Consensus 161 ~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s~T~~G~~~~~~g~~fsiYCvyKi~~s~~~~~f~~~~~~Dpit~~ 240 (377)
||+.||+|+++||+++||||+|+.||+++++|.++||||+|+++|++||+||+||||||+++++|++|+|.|++||+||+
T Consensus 250 ~i~~lq~EV~~LEeLsrqLFLE~~eLr~~ker~~~SkTfkG~yfN~LG~ffSiYCvwKif~s~inIvFdrvGk~DPVTr~ 329 (462)
T KOG2417|consen 250 DIKLLQQEVEPLEELSRQLFLELVELRQMKERVAFSKTFKGKYFNVLGHFFSIYCVWKIFMSLINIVFDRVGKVDPVTRG 329 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhhhHhHHHHHHHHHHHHHHHHhhhccCcCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhh
Q 017121 241 ISIFLQFFDIGINAQLLSQYISLLFIGMLIVMSVRGFLMNVMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFVSSILLIRK 320 (377)
Q Consensus 241 L~~~~~~~~~~~d~~~~s~~ISf~L~G~liv~S~r~~L~tl~~~~~~~s~~~s~~~~~i~L~laqlmG~Y~iSt~LLlRs 320 (377)
+++.++++|++.|+..|+|||||+|+|+|+++|+||+|.|++||+++.++++++|. ++|+++|+|||||+|++||||+
T Consensus 330 IeI~v~~~gi~~Dv~fwsQyISf~lVG~i~vtSvRGll~tltkf~y~~~~s~ssn~--ivl~l~qimgmyf~ssvllirm 407 (462)
T KOG2417|consen 330 IEITVNYLGIDFDVSFWSQYISFFLVGVIAVTSVRGLLITLTKFFYSISSSKSSNI--IVLFLAQIMGMYFVSSVLLIRM 407 (462)
T ss_pred eEEEEEEecccchHHHHHHHHHHHhhheeEEeehhhhhhhhhhhhheecccccccc--hHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred ccchHHHHHHHHHhcCCccccchhhhhhHHHHHHHHHHHHHHHHHHhhccccCCCC
Q 017121 321 SLAIEYRIIITEVLGGEIQFDFYHRWFDAIFVASAFLSLLLLSAHYTSRQADKHPI 376 (377)
Q Consensus 321 nLP~~~~~~i~~~Lg~~l~f~f~~~wFD~iFl~Sa~~t~~~i~~~~~~~~~~~~~~ 376 (377)
|+|.|||.++|++|| |++|||||||||.+|++||+.|+++++++||++++|+||.
T Consensus 408 s~p~Eyr~iit~VlG-dlqfnfyhRwfdviFl~Sa~~si~~L~l~~k~~~~~~~a~ 462 (462)
T KOG2417|consen 408 SMPAEYRTIITEVLG-DLQFNFYHRWFDVIFLVSALSSILFLYLHHKSRQSDKHAI 462 (462)
T ss_pred cChHHHHHHHHHHhh-hhcchhHHHHHHHHHHHHHHHHHHHHHHHhccccccccCC
Confidence 999999999999999 8999999999999999999999999999999999999974
No 2
>PF12430 ABA_GPCR: Abscisic acid G-protein coupled receptor
Probab=100.00 E-value=2e-55 Score=406.19 Aligned_cols=179 Identities=46% Similarity=0.778 Sum_probs=172.4
Q ss_pred HHHhccCchhhHHHHhhccceeehhhHHHHHHHHHhhccc---------------CCCCChHHHHHHHHHhhccccccHH
Q 017121 191 EAAAYSRTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKE---------------AGSVDPVTMTISIFLQFFDIGINAQ 255 (377)
Q Consensus 191 ~~~~~s~T~~G~~~~~~g~~fsiYCvyKi~~s~~~~~f~~---------------~~~~Dpit~~L~~~~~~~~~~~d~~ 255 (377)
||+++++|++||++|++||+|++||+|||+++++|+++.+ .+++||+|++++++++++++++|++
T Consensus 1 ~r~~~s~T~~G~~~~~~g~~fsiYCvyki~~t~~~~i~~~~~~~~~~~~~~~~~~~~~~Dpit~~l~~~~~~~~~~~d~~ 80 (196)
T PF12430_consen 1 ERQKRSSTLLGRLFNLLGYIFSIYCVYKIINTTLNIIFRRYSYSSSSPDDSSEASFSSSDPITRTLAILLSFFNIPIDVD 80 (196)
T ss_pred ChhhhCccHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCCCHHHHHHHHHHHhCCCCCCHH
Confidence 5788999999999999999999999999999999998877 7799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhc
Q 017121 256 LLSQYISLLFIGMLIVMSVRGFLMNVMKFFFAVSRVGSGSSSNVVLFLSEIMGMYFVSSILLIRKSLAIEYRIIITEVLG 335 (377)
Q Consensus 256 ~~s~~ISf~L~G~liv~S~r~~L~tl~~~~~~~s~~~s~~~~~i~L~laqlmG~Y~iSt~LLlRsnLP~~~~~~i~~~Lg 335 (377)
+|+|||||+|+|+|++||+|+|+.|+.++++++++..+.+..+++|++||+||+||+||+||||+|||+|++.+++++||
T Consensus 81 ~~s~~ISf~L~g~l~~~S~r~vl~t~~~~~~~~~~~~~~~~~~~~L~laelmGiY~iSt~lLlRsnLP~~~~~~i~~~Lg 160 (196)
T PF12430_consen 81 SWSRQISFLLSGVLFVTSIRGVLTTFSKFFRALPSSLSLSSNILVLFLAELMGIYFISTVLLLRSNLPPEYSSIITEILG 160 (196)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999988665569999999999999999999999999999999999999
Q ss_pred --CCccccchhhhhhHHHHHHHHHHHHHHHHHHhhc
Q 017121 336 --GEIQFDFYHRWFDAIFVASAFLSLLLLSAHYTSR 369 (377)
Q Consensus 336 --~~l~f~f~~~wFD~iFl~Sa~~t~~~i~~~~~~~ 369 (377)
+++||+|||+|||.+|++||++|++++|++||+|
T Consensus 161 ~~~~~~~~~~~~wFD~iFl~S~~~T~~~i~~~~~~~ 196 (196)
T PF12430_consen 161 ENSLLEFNFYDRWFDKIFLISAILTAVGIYVAHKHR 196 (196)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999999976
No 3
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=99.93 E-value=1.6e-26 Score=181.37 Aligned_cols=71 Identities=51% Similarity=0.880 Sum_probs=68.7
Q ss_pred CCccchhchhhceehhhHHHHHHhhccccccccccccccccccCC-HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 017121 50 KGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIREID-ESEIKALERQLMQSIETCIAKKKKII 120 (377)
Q Consensus 50 ~g~~~~e~~l~RvgViGVt~mA~LSGfGAVs~Py~~~~~f~r~V~-~~dI~~~e~~l~~t~~~l~~Kk~rl~ 120 (377)
||++++|++++||||+|||+||+|||||||||||++|++|.|||+ |.||+++|++++||.|+|.+||+|++
T Consensus 1 ~~~~~~~~~l~ri~ViGVt~mAiLSG~gaVstpy~~~~~~~~~v~~~~~i~~~~~~l~~t~~~l~~Kk~~l~ 72 (72)
T PF12537_consen 1 HGFFYIENVLSRIGVIGVTLMAILSGFGAVSTPYYYFSYFRRPVSRESDINNAERRLWHTRDMLVEKKKRLA 72 (72)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHhhhhHHccHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 678899999999999999999999999999999999999999999 99999999999999999999999874
No 4
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=94.85 E-value=0.55 Score=48.74 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=26.9
Q ss_pred hhhceehhhHHHHHHhhccccccccccccccc
Q 017121 58 LVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLF 89 (377)
Q Consensus 58 ~l~RvgViGVt~mA~LSGfGAVs~Py~~~~~f 89 (377)
+++=....|..++.++-|+|=|.-|-+.+..+
T Consensus 161 ~ial~~~~Gl~l~i~~~g~Glv~iP~~l~~~~ 192 (471)
T PF04791_consen 161 LIALSNFWGLFLFIILLGYGLVAIPRDLWRSS 192 (471)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHhc
Confidence 55666789999999999999999999876554
No 5
>PRK11546 zraP zinc resistance protein; Provisional
Probab=90.99 E-value=1.9 Score=38.45 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=23.8
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 157 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 193 (377)
Q Consensus 157 ~~~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~ 193 (377)
++++.|++|.+||..|.. +|+.+=.+++.+.++.
T Consensus 86 pD~~kI~aL~kEI~~Lr~---kL~e~r~~~~~~~~k~ 119 (143)
T PRK11546 86 PDSSKINAVAKEMENLRQ---SLDELRVKRDIAMAEA 119 (143)
T ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHc
Confidence 445669999999988776 7766666666555553
No 6
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.31 E-value=65 Score=26.93 Aligned_cols=95 Identities=17% Similarity=0.233 Sum_probs=44.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhccchhhhhccchhhhhhcceeeccc--C--CchhHhHHHHHHHHHHHH
Q 017121 98 IKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQ--D--DQKEQDIKIMEAEVQALE 173 (377)
Q Consensus 98 I~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~--~--~~~~~~i~~L~~EI~~Le 173 (377)
....-+++.+.+..+.+++..+....++.......=..-+.++-..+.+|.++-.-+ + +.-+..+..++.+|+.|+
T Consensus 8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~le 87 (110)
T TIGR02338 8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQ 87 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555566666665554444332221111112223335555554432111 0 001234556666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 017121 174 ELSKQLFLEIYELRQAKEA 192 (377)
Q Consensus 174 ~l~~~L~~el~~L~~~~~~ 192 (377)
.-...+-.++.++++..++
T Consensus 88 k~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 88 RQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666655443
No 7
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=60.71 E-value=87 Score=25.18 Aligned_cols=31 Identities=29% Similarity=0.368 Sum_probs=20.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAK 190 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~ 190 (377)
+++..++.||+.|+.-...+-.++.+++...
T Consensus 69 ~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 69 ERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777776666666666665443
No 8
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=56.91 E-value=68 Score=36.71 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhccchhh--------hhccchhhhhhcc-e---eec-ccCCchhHh
Q 017121 95 ESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEK--------LKARSFFKRIVGT-V---VRS-VQDDQKEQD 161 (377)
Q Consensus 95 ~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~--------~~~~~~~~~v~~s-~---~~~-~~~~~~~~~ 161 (377)
+.++..+|+.+++|||+|..+=+++..-+..........++ .++.++-.++-|. + -+| ...+....+
T Consensus 1014 ~a~lr~Ke~efeetmdaLq~di~~lEsek~elKqrl~~~~~k~q~~s~~~~~~~ist~~sG~~s~~~~~s~~~g~a~~g~ 1093 (1243)
T KOG0971|consen 1014 QALLRKKEKEFEETMDALQADIDQLESEKAELKQRLNSQSKKTQEGSRGPPPSGISTLVSGIASEEQQRSAIPGQALVGD 1093 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhcccccCccccCCCCcceeccccCCCCCccccccCCCcccccc
Confidence 44578888888888888887666555443333222111100 0011110011010 0 000 011111234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017121 162 IKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYS 196 (377)
Q Consensus 162 i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s 196 (377)
.--|.+||+.|..-.++.-.|-.+|+...-|+..+
T Consensus 1094 ~p~l~~qin~l~na~~qer~er~~Lkg~~mra~~a 1128 (1243)
T KOG0971|consen 1094 SPLLLQQINALRNAISQERHERSILKGAQMRASLA 1128 (1243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 46778888888888888888888888777766543
No 9
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=55.63 E-value=26 Score=27.27 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=26.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQ 188 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~ 188 (377)
+++.+|+.||.-|.....++-.|||+|-.
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaE 30 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAE 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999865
No 10
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=55.36 E-value=53 Score=36.63 Aligned_cols=107 Identities=17% Similarity=0.316 Sum_probs=61.4
Q ss_pred Hhhccc---cccccccc------cccccccCCHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHhhhhhhccchhhhhcc
Q 017121 72 VLAGFG---AVNLPYSY------LSLFIREIDESEIKALERQLMQSIETCIAKK---KKIILCQMEMDRIQGSEEKLKAR 139 (377)
Q Consensus 72 ~LSGfG---AVs~Py~~------~~~f~r~V~~~dI~~~e~~l~~t~~~l~~Kk---~rl~~~~~~~~~~~~~~~~~~~~ 139 (377)
+=||.| +||+-|.- |+.-.+-|+|.||+..|.-.+.|.+-+++++ +|++..-.+++-+...+ +.+.
T Consensus 353 iESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~gfd~drieAil~qiEislk~q--st~f 430 (998)
T KOG2019|consen 353 IESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEISLKHQ--STGF 430 (998)
T ss_pred HHcCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhcc--ccch
Confidence 348888 88887763 4445788999999999999999999888754 34443332332221111 1112
Q ss_pred chhhhhhcceeecccCCch-------hHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 140 SFFKRIVGTVVRSVQDDQK-------EQDIKIMEAEVQALEELSKQLFLEIYE 185 (377)
Q Consensus 140 ~~~~~v~~s~~~~~~~~~~-------~~~i~~L~~EI~~Le~l~~~L~~el~~ 185 (377)
|+ .++.++...|..+.+ +++++.+++.++. =+..+|.++.+
T Consensus 431 GL--~L~~~i~~~W~~d~DPfE~Lk~~~~L~~lk~~l~e---k~~~lfq~lIk 478 (998)
T KOG2019|consen 431 GL--SLMQSIISKWINDMDPFEPLKFEEQLKKLKQRLAE---KSKKLFQPLIK 478 (998)
T ss_pred hH--HHHHHHhhhhccCCCccchhhhhhHHHHHHHHHhh---hchhHHHHHHH
Confidence 22 122234445533222 3667777776654 14455555443
No 11
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=54.93 E-value=1.1e+02 Score=25.68 Aligned_cols=30 Identities=13% Similarity=0.330 Sum_probs=21.1
Q ss_pred ccCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 017121 91 REIDESEIKALERQLMQSIETCIAKKKKIILCQMEMD 127 (377)
Q Consensus 91 r~V~~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~ 127 (377)
+.++.+|+..+++++.+ ..+|+...+.++.
T Consensus 30 ~~a~~~~~~~l~~~~~~-------~~~Rl~~lE~~l~ 59 (106)
T PF10805_consen 30 TYAKREDIEKLEERLDE-------HDRRLQALETKLE 59 (106)
T ss_pred hhccHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 45778899998876664 3557777776654
No 12
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=53.76 E-value=1.4e+02 Score=28.92 Aligned_cols=65 Identities=22% Similarity=0.289 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhccchhhhhccchhhhhhcceeecccCCchhHhHHHHHHHHHHHHH
Q 017121 95 ESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEE 174 (377)
Q Consensus 95 ~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~i~~L~~EI~~Le~ 174 (377)
+..+.++|+.+..-...+.+--.+|+.++++..+ + | .++.+++-|++.+.+
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~----------------L-----r--------G~~E~~~~~l~~~~~ 89 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDS----------------L-----R--------GQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----------------H-----h--------hHHHHHHHHHHHHHH
Confidence 4556777777765444444444455555544321 1 1 134577888999999
Q ss_pred HHHHHHHHHHHHHH
Q 017121 175 LSKQLFLEIYELRQ 188 (377)
Q Consensus 175 l~~~L~~el~~L~~ 188 (377)
=.+++|.||.++.+
T Consensus 90 rq~~~y~dld~r~~ 103 (263)
T PRK10803 90 RQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988654
No 13
>PF03350 UPF0114: Uncharacterized protein family, UPF0114; InterPro: IPR005134 This conserved hypothetical protein family with four predicted transmembrane regions is found in Escherichia coli, Haemophilus influenzae, and Helicobacter pylori 26695, among completed genomes.
Probab=53.32 E-value=1.1e+02 Score=26.39 Aligned_cols=63 Identities=24% Similarity=0.382 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-----hccCCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 017121 257 LSQYISLLFIGMLIVMSVRGFLMNVMKFFFAV-----SRVGSGSSSNVVLFLSEIMGMYFVSSILLIR 319 (377)
Q Consensus 257 ~s~~ISf~L~G~liv~S~r~~L~tl~~~~~~~-----s~~~s~~~~~i~L~laqlmG~Y~iSt~LLlR 319 (377)
.+|++.+..+-+++++++-=+......++..+ +...+.+..-+++-+-++.-+|.++++++|=
T Consensus 4 ~sR~l~~~~vig~l~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vl~~vD~~Lia~vllI~ 71 (124)
T PF03350_consen 4 ASRWLVLPAVIGLLLGSVLLFVKGAVEIFHAFIEVFSAHVFSSDEKDLILGVLELVDLFLIANVLLIF 71 (124)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888877655555544444444 2222222233788889999999999999874
No 14
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=53.26 E-value=1.2e+02 Score=30.25 Aligned_cols=33 Identities=36% Similarity=0.456 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 017121 94 DESEIKALERQLMQSIETCIAKKKKIILCQMEM 126 (377)
Q Consensus 94 ~~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~ 126 (377)
+..+++.+.++|......+.+||++++.++.+.
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el 239 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEEL 239 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666665443
No 15
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=51.20 E-value=1.4e+02 Score=24.61 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=20.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 192 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 192 (377)
+.+..++.+|+.++.=...+-.++.+++...++
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666655443
No 16
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.58 E-value=42 Score=26.51 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=25.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKE 191 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~ 191 (377)
+-|.-|++||+.|++=.++|-.|..+++..++
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~re 49 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQRE 49 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Confidence 34788999999999999999998887765433
No 17
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=50.34 E-value=2.3e+02 Score=26.96 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=26.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017121 159 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 195 (377)
Q Consensus 159 ~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~ 195 (377)
++++..|+.+|+.++..++++.--+.++....++.-.
T Consensus 83 ~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 83 EQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667888888888888888887777777766666333
No 18
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.54 E-value=1.4e+02 Score=27.61 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH
Q 017121 163 KIMEAEVQALEEL-----SKQLFLEIYELRQAKEA 192 (377)
Q Consensus 163 ~~L~~EI~~Le~l-----~~~L~~el~~L~~~~~~ 192 (377)
++|++||.-+-.. .+.|..+|++|+.++-|
T Consensus 39 k~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtr 73 (208)
T KOG3231|consen 39 KQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTR 73 (208)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhh
Confidence 4566666555433 56777888888766543
No 19
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=49.16 E-value=92 Score=25.46 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=19.0
Q ss_pred cCCHHHHHHHHHHHHhHHHHHHHHHHHH
Q 017121 92 EIDESEIKALERQLMQSIETCIAKKKKI 119 (377)
Q Consensus 92 ~V~~~dI~~~e~~l~~t~~~l~~Kk~rl 119 (377)
+.+-.|+..+|++++.++.-+.++|.++
T Consensus 45 ~Ls~~eL~~LE~~Le~aL~~VR~rK~~~ 72 (100)
T PF01486_consen 45 SLSLKELQQLEQQLESALKRVRSRKDQL 72 (100)
T ss_pred ccchHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3455667777777777777776666653
No 20
>PRK11637 AmiB activator; Provisional
Probab=49.03 E-value=1.6e+02 Score=30.28 Aligned_cols=32 Identities=3% Similarity=0.177 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 017121 94 DESEIKALERQLMQSIETCIAKKKKIILCQME 125 (377)
Q Consensus 94 ~~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 125 (377)
.+.++.++++++.+..+.+.+.++++..++.+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~ 76 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQ 76 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777776666555555554443
No 21
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=46.66 E-value=1.1e+02 Score=24.81 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=14.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEI 183 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el 183 (377)
+||+.++.||.-||.==.+|+.++
T Consensus 61 ~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 61 EEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777766666444444444
No 22
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=45.63 E-value=86 Score=30.44 Aligned_cols=33 Identities=6% Similarity=0.175 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 192 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 192 (377)
.++..|++||..|.-.-.++-.|+.+++++++.
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 467889999998888777787788887766554
No 23
>PRK09039 hypothetical protein; Validated
Probab=45.39 E-value=1.6e+02 Score=29.85 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchH
Q 017121 300 VLFLSEIMGMYFVSSILLIRKSLAIE 325 (377)
Q Consensus 300 ~L~laqlmG~Y~iSt~LLlRsnLP~~ 325 (377)
+.-+|+-=+..|.-.++ ...+|++
T Consensus 285 N~~LS~~RA~aV~~~Li--~~Gi~~~ 308 (343)
T PRK09039 285 NWELSSARAISVVKFLI--ALGVPAD 308 (343)
T ss_pred HHHHHHHHHHHHHHHHH--HCCCCHH
Confidence 55666666555544443 5677766
No 24
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.35 E-value=3.5e+02 Score=26.68 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=9.8
Q ss_pred HhHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEE 174 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~ 174 (377)
++|+.|+.||+.+++
T Consensus 80 ~eik~l~~eI~~~~~ 94 (265)
T COG3883 80 AEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566677777766655
No 25
>PRK09343 prefoldin subunit beta; Provisional
Probab=40.59 E-value=2.1e+02 Score=24.46 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=27.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYS 196 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s 196 (377)
+.+..++.+|..||.=...+-..+.++++..++...+
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466677788888888888888888888777665544
No 26
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=40.10 E-value=90 Score=33.00 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHhhccce
Q 017121 162 IKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYAL 211 (377)
Q Consensus 162 i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s~T~~G~~~~~~g~~f 211 (377)
=++|++.|+.||.-.+.|+.+|.+++........+.|-.|+...++.+-|
T Consensus 288 NqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an~s~qt~tC~av~~lS~ 337 (472)
T KOG0709|consen 288 NQELQKKVEELELSNRSLLAQLKKLQTLVIQVANKSTQTSTCLAVLLLSF 337 (472)
T ss_pred cHHHHHHHHHHhhccHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHH
Confidence 37999999999999999999999999888887777788888666665544
No 27
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=38.93 E-value=1.1e+02 Score=23.97 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=18.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELR 187 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~ 187 (377)
+.|..|++|++.|++=..++..+-.+|+
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~ 45 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3467778888777777555555555554
No 28
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=37.73 E-value=3.9e+02 Score=25.91 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=30.0
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017121 157 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 194 (377)
Q Consensus 157 ~~~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~ 194 (377)
+++.+.++|+.|+..++.=..+|-.|+.++..+++..+
T Consensus 86 ~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 86 KDERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999888888888888888887666544
No 29
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=37.42 E-value=44 Score=24.25 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFL 181 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~ 181 (377)
...++|+.|+..|..+.+.||.
T Consensus 18 vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHHh
Confidence 3468999999999999999985
No 30
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.81 E-value=3.1e+02 Score=24.44 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 017121 93 IDESEIKALERQLMQSIETCIAKKKKIILCQ 123 (377)
Q Consensus 93 V~~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~ 123 (377)
+++.++..+...+.+..+-+.+-+.+...++
T Consensus 69 ~s~eel~~ld~ei~~L~~el~~l~~~~k~l~ 99 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREELAELKKEVKSLE 99 (169)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777666655555544444444443
No 31
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=36.77 E-value=3.2e+02 Score=28.74 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=13.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELR 187 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~ 187 (377)
+.+..|.+....|...+..+-.|=.+++
T Consensus 161 ~~i~~l~~~~~~l~~~~~~iaaeq~~l~ 188 (420)
T COG4942 161 ERIDALKATLKQLAAVRAEIAAEQAELT 188 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555544443333
No 32
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=35.31 E-value=3.7e+02 Score=31.51 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=34.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-chhhHH
Q 017121 159 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSR-TWRGHM 203 (377)
Q Consensus 159 ~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s~-T~~G~~ 203 (377)
+.+++.|++||+.+|+...+|-.|+.++++...+.+..+ +..|+.
T Consensus 400 e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i 445 (1074)
T KOG0250|consen 400 ENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEI 445 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 467899999999999999999999999887655555433 444553
No 33
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.11 E-value=1.3e+02 Score=22.47 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=27.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 193 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~ 193 (377)
+.+..|+.++..|+....+|-.++..|....++-
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999998888888888888766543
No 34
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.82 E-value=4.7e+02 Score=26.11 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=17.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELR 187 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~ 187 (377)
+++.+|+.|.+.|+..+.+.+.+.++++
T Consensus 78 ~el~~le~e~~~l~~eE~~~~~~~n~~~ 105 (314)
T PF04111_consen 78 QELEELEEELEELDEEEEEYWREYNELQ 105 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777666666666555555
No 35
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=34.73 E-value=2e+02 Score=34.11 Aligned_cols=75 Identities=13% Similarity=0.153 Sum_probs=47.4
Q ss_pred ccCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhccchhhhhccchhhhhhcceeecccCCchhHhHHHHHHHHH
Q 017121 91 REIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQ 170 (377)
Q Consensus 91 r~V~~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~i~~L~~EI~ 170 (377)
+.|+.+||+++-..++...+.|.+-+.+|.+.|..+++. .. +. .....++..||.|.+
T Consensus 1220 ~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi----------------~~----~~--~~a~~~LesLq~~~~ 1277 (1758)
T KOG0994|consen 1220 PSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDI----------------TN----SL--PLAGKDLESLQREFN 1277 (1758)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh----------------hh----cc--chhhhhHHHHHHHHH
Confidence 467778887777666665555555555555555443321 10 00 112246789999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 017121 171 ALEELSKQLFLEIYELR 187 (377)
Q Consensus 171 ~Le~l~~~L~~el~~L~ 187 (377)
+|..+.++|-..+.+++
T Consensus 1278 ~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1278 GLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99998888877777665
No 36
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=34.66 E-value=1.4e+02 Score=24.12 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=21.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYE 185 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~ 185 (377)
+.|.-|++||+-|++=..+|..|...
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999988888887665
No 37
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.26 E-value=3.8e+02 Score=25.89 Aligned_cols=30 Identities=27% Similarity=0.248 Sum_probs=25.6
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 158 KEQDIKIMEAEVQALEELSKQLFLEIYELR 187 (377)
Q Consensus 158 ~~~~i~~L~~EI~~Le~l~~~L~~el~~L~ 187 (377)
.+++++..++|++.|+.+.+-+-.|+.+.+
T Consensus 91 ieqeik~~q~elEvl~~n~Q~lkeE~dd~k 120 (246)
T KOG4657|consen 91 IEQEIKATQSELEVLRRNLQLLKEEKDDSK 120 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 457899999999999999888888887766
No 38
>PRK15396 murein lipoprotein; Provisional
Probab=32.05 E-value=1.6e+02 Score=23.69 Aligned_cols=54 Identities=22% Similarity=0.391 Sum_probs=30.6
Q ss_pred hhhHHHHH--HhhccccccccccccccccccCC--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Q 017121 64 VIGVTVMA--VLAGFGAVNLPYSYLSLFIREID--ESEIKALERQLMQSIETCIAKKKKIILCQMEMDR 128 (377)
Q Consensus 64 ViGVt~mA--~LSGfGAVs~Py~~~~~f~r~V~--~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~ 128 (377)
++|..+++ +|+| |.|+| .|+ .+|+..+..+.++.......-|.....++.++.|
T Consensus 7 ~l~av~ls~~LLaG--CAs~~---------kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~r 64 (78)
T PRK15396 7 VLGAVILGSTLLAG--CSSNA---------KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAAR 64 (78)
T ss_pred HHHHHHHHHHHHHH--cCCch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 4565 55666 222 2466666666676666666666666665555443
No 39
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=31.74 E-value=4.3e+02 Score=27.77 Aligned_cols=21 Identities=38% Similarity=0.211 Sum_probs=11.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 017121 103 RQLMQSIETCIAKKKKIILCQ 123 (377)
Q Consensus 103 ~~l~~t~~~l~~Kk~rl~~~~ 123 (377)
++++++...|.++.+++...+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~ 58 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQ 58 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556666666655555555443
No 40
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=30.37 E-value=4.4e+02 Score=24.40 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 166 EAEVQALEELSKQLFLEIYELRQAKEA 192 (377)
Q Consensus 166 ~~EI~~Le~l~~~L~~el~~L~~~~~~ 192 (377)
+.|++.|.+|+..+-.|+.||+.+.+.
T Consensus 144 R~EaeQLQsLR~avRqElqELE~QL~D 170 (179)
T PF14723_consen 144 REEAEQLQSLRSAVRQELQELEFQLED 170 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999999976654
No 41
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=30.34 E-value=51 Score=25.01 Aligned_cols=47 Identities=30% Similarity=0.415 Sum_probs=30.3
Q ss_pred hhchhhceehhhHHHHHHhhccccccccccccccccc------cCCHHHHHHHHHHHHhHHHHH
Q 017121 55 IPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIR------EIDESEIKALERQLMQSIETC 112 (377)
Q Consensus 55 ~e~~l~RvgViGVt~mA~LSGfGAVs~Py~~~~~f~r------~V~~~dI~~~e~~l~~t~~~l 112 (377)
++..+--++|+|+.++...| |+.|.| +....|....|++|+...+++
T Consensus 3 i~~~Iy~~~Vi~l~vl~~~~-----------Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLL 55 (58)
T PF13314_consen 3 IGDLIYYILVIILIVLFGAS-----------FTLFIRRILINSNAKKQDVDSMEQKLDRIIELL 55 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 34556667788887776554 223433 345556778888888887765
No 42
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=30.15 E-value=19 Score=32.31 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=22.9
Q ss_pred CchhhHHHHhhccceeehhhHHHHHHHHHhhcccCCCCChH
Q 017121 197 RTWRGHMQNLLGYALSIYCVYKMIKSLQSVVFKEAGSVDPV 237 (377)
Q Consensus 197 ~T~~G~~~~~~g~~fsiYCvyKi~~s~~~~~f~~~~~~Dpi 237 (377)
+|..+-...+.+-+|.-|||| ||+...+||-
T Consensus 6 ~~~~~~~ag~a~~~flgYciY----------FD~KRR~dPd 36 (148)
T TIGR00985 6 KSNVVIAAGIAAAAFLGYAIY----------FDYKRRNDPD 36 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHh----------hhhhhccCHH
Confidence 455555556678889999977 7887778886
No 43
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=28.63 E-value=4.3e+02 Score=23.68 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 017121 97 EIKALERQLMQSIETCIAKKKKII 120 (377)
Q Consensus 97 dI~~~e~~l~~t~~~l~~Kk~rl~ 120 (377)
|+...++++.+..+-+.+-.+++.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~ 105 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQ 105 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444333333
No 44
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=28.37 E-value=1.5e+02 Score=26.00 Aligned_cols=43 Identities=30% Similarity=0.339 Sum_probs=33.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhccCchhhH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQ--AKEAAAYSRTWRGH 202 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~--~~~~~~~s~T~~G~ 202 (377)
+.|+.||.|..++|.+...|-.-+..|+. +++|.++.+...|-
T Consensus 32 arIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~~~ 76 (134)
T PF08232_consen 32 ARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKYGT 76 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 45789999999999999999998888885 66666665544443
No 45
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=27.94 E-value=2e+02 Score=23.53 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=28.6
Q ss_pred HHhhccccccccccccccccccCC--HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Q 017121 71 AVLAGFGAVNLPYSYLSLFIREID--ESEIKALERQLMQSIETCIAKKKKIILCQMEMDR 128 (377)
Q Consensus 71 A~LSGfGAVs~Py~~~~~f~r~V~--~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~ 128 (377)
++|+| |.|+| .|+ .+|+..+..+.++....+..-|.....++.++.+
T Consensus 15 ~LLaG--CAs~~---------kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~R 63 (85)
T PRK09973 15 CLLSG--CVNEQ---------KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANR 63 (85)
T ss_pred HHHHH--cCCch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34665 66666 333 3567777777777766666666666666655443
No 46
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=27.24 E-value=3.2e+02 Score=29.14 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=34.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGH 202 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s~T~~G~ 202 (377)
++-..|+.||..|.++..+|..|-..|-+..+.....+--+|-
T Consensus 165 ~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE 207 (475)
T PRK10361 165 QERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGE 207 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHH
Confidence 5578899999999999999999999999888765444444454
No 47
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=27.21 E-value=3.4e+02 Score=21.95 Aligned_cols=59 Identities=20% Similarity=0.216 Sum_probs=36.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhccchhhhhccchhhhhhcceeecccCCchhHhHHHHHHHHHHHHHHHH
Q 017121 98 IKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEELSK 177 (377)
Q Consensus 98 I~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~i~~L~~EI~~Le~l~~ 177 (377)
+..+|.+..++.|.|.-=+-++..++.+. ..|.+|++.+.+=+.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn------------------------------------~~L~~e~~~~~~~r~ 49 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKN------------------------------------NSLSQEVQNAQHQRE 49 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHhhHH
Confidence 56788999999998855555555544221 245556666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 017121 178 QLFLEIYELRQAKEA 192 (377)
Q Consensus 178 ~L~~el~~L~~~~~~ 192 (377)
.|-.|-..|++++..
T Consensus 50 ~L~~en~qLk~E~~~ 64 (79)
T PRK15422 50 ELERENNHLKEQQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666655543
No 48
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=27.18 E-value=4.7e+02 Score=24.41 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=23.0
Q ss_pred HhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEE---LSKQLFLEIYELRQAKE 191 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~---l~~~L~~el~~L~~~~~ 191 (377)
+.-..|+++++++|. ++|+.|.+...-.+..-
T Consensus 118 ~~f~~Lq~ql~~tEn~Ia~aR~~YN~av~~yN~~i 152 (185)
T COG1704 118 ENFLELQSQLEGTENRIAVARRLYNEAVRDYNVKI 152 (185)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788888888884 78888888776554443
No 49
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=27.05 E-value=1.2e+02 Score=30.24 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 192 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 192 (377)
|.++-||..+.-||.-.+.|--||..|+..+.+
T Consensus 312 EYVKCLENRVAVLENQNKaLIEELKtLKeLYc~ 344 (348)
T KOG3584|consen 312 EYVKCLENRVAVLENQNKALIEELKTLKELYCH 344 (348)
T ss_pred HHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhc
Confidence 678999999999999999998888877766543
No 50
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=27.00 E-value=4.5e+02 Score=23.29 Aligned_cols=33 Identities=6% Similarity=0.198 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 017121 95 ESEIKALERQLMQSIETCIAKKKKIILCQMEMD 127 (377)
Q Consensus 95 ~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~ 127 (377)
+.||++++.++-.+...+-.||..++.+..++.
T Consensus 21 ~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~ 53 (136)
T PF11570_consen 21 DEDIATLQERQASAEQALNGRRSELDQANKKVK 53 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 567999999999998888889999998876554
No 51
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.90 E-value=77 Score=36.84 Aligned_cols=62 Identities=8% Similarity=-0.144 Sum_probs=42.9
Q ss_pred CccchhchhhceehhhHHHHHHhhccccccccccccccccccCCHHHHHHHHHHHHhHHHHH
Q 017121 51 GFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIREIDESEIKALERQLMQSIETC 112 (377)
Q Consensus 51 g~~~~e~~l~RvgViGVt~mA~LSGfGAVs~Py~~~~~f~r~V~~~dI~~~e~~l~~t~~~l 112 (377)
+++..-...-+....+.++|++|.+||.+.-++.+...+-+.+.+....-.++.++|-..+-
T Consensus 732 ~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~ 793 (1075)
T KOG2171|consen 732 AIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQ 793 (1075)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345667789999999999999999999998877655554544555555555544433
No 52
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=26.52 E-value=2e+02 Score=22.37 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017121 163 KIMEAEVQALEELSKQLFLEIYE 185 (377)
Q Consensus 163 ~~L~~EI~~Le~l~~~L~~el~~ 185 (377)
+.++.|+++|+.+..-|+.++.+
T Consensus 21 s~lr~eiealkY~N~yL~~~~v~ 43 (66)
T PF07438_consen 21 SELRKEIEALKYMNDYLFDQFVR 43 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999887765
No 53
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=26.02 E-value=5.8e+02 Score=25.56 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 017121 94 DESEIKALERQLMQSIETCIAKKKKIILCQMEM 126 (377)
Q Consensus 94 ~~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~ 126 (377)
+..++.++..++.....-+..||+++...+.++
T Consensus 202 d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 202 DPTELDRAKEKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666666655443
No 54
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=25.81 E-value=2e+02 Score=22.09 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhH
Q 017121 165 MEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGH 202 (377)
Q Consensus 165 L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s~T~~G~ 202 (377)
++.+++.||.=....-.++..+..+.++.....+|.-+
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r 55 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWR 55 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455555555555555555444
No 55
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.61 E-value=2.2e+02 Score=21.41 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017121 163 KIMEAEVQALEELSKQLFLEIYELRQAKEAAA 194 (377)
Q Consensus 163 ~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~ 194 (377)
.++++|+..++..=.++-.|..+++...++.+
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555444443
No 56
>smart00338 BRLZ basic region leucin zipper.
Probab=25.55 E-value=2.2e+02 Score=21.21 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=25.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 192 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 192 (377)
+.+..|+.++..|+.-...|-.++..|+.+...
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888887765543
No 57
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=25.12 E-value=87 Score=26.05 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHHHhH
Q 017121 93 IDESEIKALERQLMQS 108 (377)
Q Consensus 93 V~~~dI~~~e~~l~~t 108 (377)
|||+||.+-|++-..+
T Consensus 73 VT~eDIr~QE~rVk~a 88 (96)
T PF14048_consen 73 VTEEDIRRQERRVKKA 88 (96)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999888765
No 58
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.01 E-value=2.1e+02 Score=24.67 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=28.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 159 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 193 (377)
Q Consensus 159 ~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~ 193 (377)
+.++..++.|++.|+.-+..+..|+.+|-.+-++.
T Consensus 29 E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 29 EGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999988887655444
No 59
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=25.00 E-value=4.8e+02 Score=27.20 Aligned_cols=31 Identities=10% Similarity=0.269 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 017121 97 EIKALERQLMQSIETCIAKKKKIILCQMEMD 127 (377)
Q Consensus 97 dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~ 127 (377)
++..+|+.+.+.-..|..-|.++..++.+.+
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qkl~da~~~~e 33 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQKLKDAEKQYE 33 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555555555566667777776554
No 60
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=24.86 E-value=6e+02 Score=24.10 Aligned_cols=10 Identities=30% Similarity=0.484 Sum_probs=4.3
Q ss_pred hhHHHHHHhh
Q 017121 65 IGVTVMAVLA 74 (377)
Q Consensus 65 iGVt~mA~LS 74 (377)
+++.+++.++
T Consensus 7 ~~~~~l~~~~ 16 (251)
T PF11932_consen 7 LGALLLASSA 16 (251)
T ss_pred HHHHHHHhhh
Confidence 3444444444
No 61
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.65 E-value=1.3e+02 Score=28.57 Aligned_cols=37 Identities=27% Similarity=0.499 Sum_probs=33.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017121 159 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 195 (377)
Q Consensus 159 ~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~ 195 (377)
.+++..++.|+.-||.+..++-.|+.-|+.|.++.+.
T Consensus 133 keklep~E~elrrLed~~~sI~~e~~YLr~REeemr~ 169 (210)
T KOG1691|consen 133 KEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRN 169 (210)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678899999999999999999999999998888776
No 62
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.49 E-value=6e+02 Score=23.90 Aligned_cols=87 Identities=15% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhccchhhhhccchhhhhhcceeecccCCchhHhHHHHHHHHHHHHH
Q 017121 95 ESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEE 174 (377)
Q Consensus 95 ~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~i~~L~~EI~~Le~ 174 (377)
+.++..++.++++....+.+.+.++...-.+.. +++++|+.|-+.|++
T Consensus 99 e~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~--------------------------------~~~~~L~~~n~~L~~ 146 (206)
T PRK10884 99 ENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSD--------------------------------SVINGLKEENQKLKN 146 (206)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH----HHHHHHhccCchhhHHHHhhccceee
Q 017121 175 LSKQLFLEIYELR----QAKEAAAYSRTWRGHMQNLLGYALSI 213 (377)
Q Consensus 175 l~~~L~~el~~L~----~~~~~~~~s~T~~G~~~~~~g~~fsi 213 (377)
--..+-.|+.+++ ..++.....--..|=...+.|.++++
T Consensus 147 ~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGl 189 (206)
T PRK10884 147 QLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGL 189 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHH
No 63
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins. The function of this family is unclear.
Probab=24.07 E-value=2.4e+02 Score=28.36 Aligned_cols=65 Identities=37% Similarity=0.513 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccchhchhhceehhhHHHHHHhhccccccccccccccccccCCHHHH
Q 017121 19 ERAALGAILFLLAFLYAFWRMGIHFPMPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIREIDESEI 98 (377)
Q Consensus 19 ~~~~~~~~~~~~~~l~~FwklG~~~p~~~~~~g~~~~e~~l~RvgViGVt~mA~LSGfGAVs~Py~~~~~f~r~V~~~dI 98 (377)
+.+...+.++|..+=..|. .|+.+|- .+ +| +-|.+|++|+|||-|..- ..++.+|++-
T Consensus 25 np~R~gt~lFW~llg~~F~-~G~~lp~------------~~--~G-~lvl~m~~la~~~~v~~g------~~~~~s~e~r 82 (308)
T PF06166_consen 25 NPKRIGTALFWGLLGLIFI-FGDYLPP------------FV--VG-ILVLVMALLAGFGQVGIG------SYKEPSEEER 82 (308)
T ss_pred CCcccchHHHHHHHHHHHH-cCccchh------------HH--HH-HHHHHHHHHHHcCCCCCC------CCCCCCHHHH
Confidence 4467789999999988887 6887772 11 12 447789999999988653 2245566544
Q ss_pred HHHHHHH
Q 017121 99 KALERQL 105 (377)
Q Consensus 99 ~~~e~~l 105 (377)
++..+|+
T Consensus 83 ~~~a~rl 89 (308)
T PF06166_consen 83 EASAKRL 89 (308)
T ss_pred HHHHHHh
Confidence 4444443
No 64
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=23.60 E-value=4.2e+02 Score=25.89 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhccchhhhhccchhhhhhcce-eecccCCchhHhHHHHHHHHHHHHH
Q 017121 96 SEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTV-VRSVQDDQKEQDIKIMEAEVQALEE 174 (377)
Q Consensus 96 ~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-~~~~~~~~~~~~i~~L~~EI~~Le~ 174 (377)
..|.++.+++++..+-|..=+.+++..+.++............. . ... -.+......+++|..=+.||..||.
T Consensus 180 eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~----~--~~~~~~~~~~~~~de~I~rEeeEIreLE~ 253 (259)
T PF08657_consen 180 EKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSD----D--EESEESSEDSVDTDEDIRREEEEIRELER 253 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc----c--cccccccccchhHHHHHHHHHHHHHHHHH
Confidence 46888888888888888777777776665544321111000000 0 000 0000111234677777778888877
Q ss_pred HHHHH
Q 017121 175 LSKQL 179 (377)
Q Consensus 175 l~~~L 179 (377)
-.++|
T Consensus 254 k~~~L 258 (259)
T PF08657_consen 254 KKREL 258 (259)
T ss_pred HHHhc
Confidence 65543
No 65
>PF03376 Adeno_E3B: Adenovirus E3B protein; InterPro: IPR005041 Adenoviruses are medium-sized, non-enveloped viruses containing double-stranded DNA. They can cause a variety of diseases including pneumonia, cystitis, conjunctivitis and diarrhoea, all of which can be fatal to patients who are immunocompromised []. These viruses have many mechanisms to evade the host immune response, including several proteins which are expressed as part of the early transcription unit 3 (E3) []. One of the regions of E3, known as the E3B region, encodes three proteins known as 10.4K, 14.5K and 14.7K. Two of these proteins, 10.4K and 14.5K, form the RID complex (receptor internalisation and degradation) which protects the infected cell from host-induced lysis by clearing the the TNF and Fas receptors from the cell surface []. Other receptors, such as the epidermal growth factor receptor, are also known to be cleared by RID []. This entry represents the E3B region 10.4K protein, also known as the RID alpha subunit.; GO: 0016020 membrane
Probab=23.44 E-value=2.5e+02 Score=21.91 Aligned_cols=33 Identities=12% Similarity=0.268 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 017121 255 QLLSQYISLLFIGMLIVMSVRGFLMNVMKFFFA 287 (377)
Q Consensus 255 ~~~s~~ISf~L~G~liv~S~r~~L~tl~~~~~~ 287 (377)
..+..++=|.++.++-+||+--++.++..++.+
T Consensus 10 ~pf~vYlif~fv~c~~iCSi~~~~it~~Q~iDy 42 (67)
T PF03376_consen 10 PPFAVYLIFAFVTCTCICSIVCFVITFFQCIDY 42 (67)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999888655
No 66
>PF12507 HCMV_UL139: Human Cytomegalovirus UL139 protein; InterPro: IPR021042 This entry represents eukaryotic and viral proteins of approximately 140 amino acids in length. The UL139 product shares sequence homology with human CD24, a signal transducer modulating B-cell activation responses, and the sequences in the G1c variant of UL139 contained a specific attachment site of prokaryotic membrane lipoprotein lipid [].
Probab=23.39 E-value=70 Score=27.79 Aligned_cols=44 Identities=16% Similarity=0.104 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHH
Q 017121 162 IKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQN 205 (377)
Q Consensus 162 i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~s~T~~G~~~~ 205 (377)
|-.++.+|+.|++=......|+..++.+.++.++..+-+++|++
T Consensus 46 ~l~~rs~i~~~~~k~~~~~~~lrs~~geveE~e~~e~~~drfy~ 89 (121)
T PF12507_consen 46 ILALRSEIEALDAKYHSDSQQLRSCCGEVEEAEEKEEERDRFYE 89 (121)
T ss_pred HHHHhhhhhhhhhhhcchhhhhHhhhccchHHHHHHHhHhhhhh
Confidence 34667777777777777777777777776666666666777554
No 67
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.23 E-value=4.9e+02 Score=27.75 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=24.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 159 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 193 (377)
Q Consensus 159 ~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~ 193 (377)
++++.+...||+.=|++..+|+.|+..+-....|.
T Consensus 351 eqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk 385 (521)
T KOG1937|consen 351 EQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRK 385 (521)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHH
Confidence 34555666677777888899999998887633333
No 68
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=23.18 E-value=6.9e+02 Score=24.65 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 161 DIKIMEAEVQALEELSKQLFLEIYELR 187 (377)
Q Consensus 161 ~i~~L~~EI~~Le~l~~~L~~el~~L~ 187 (377)
.++.+.-|+..+-++-..+...++.|.
T Consensus 221 ~l~dv~~~~~~~~~~~~~~~~~l~~l~ 247 (322)
T COG0598 221 YLRDVLDHLTQLIEMLEALRERLSSLL 247 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433333333
No 69
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=22.67 E-value=85 Score=32.49 Aligned_cols=43 Identities=12% Similarity=0.276 Sum_probs=33.4
Q ss_pred hhCCCCC-CCCCCCCccchhchhhceehhhHHHHHHhhcccccc
Q 017121 38 RMGIHFP-MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVN 80 (377)
Q Consensus 38 klG~~~p-~~~~~~g~~~~e~~l~RvgViGVt~mA~LSGfGAVs 80 (377)
|-|..+| +.++++..-.+++.+.|+.++|-..+|++++....-
T Consensus 327 k~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~~p~l~ 370 (410)
T TIGR00967 327 KQGMFIPGIRPGKMTEKYLKRVIPRLTFVGSLFLGLIALLPNFL 370 (410)
T ss_pred HCCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777 444455556789999999999999999999876553
No 70
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=22.47 E-value=2.5e+02 Score=25.90 Aligned_cols=34 Identities=35% Similarity=0.404 Sum_probs=19.9
Q ss_pred hHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 017121 159 EQDIKIMEAEVQALEELSKQ---LFLEIYELRQAKEA 192 (377)
Q Consensus 159 ~~~i~~L~~EI~~Le~l~~~---L~~el~~L~~~~~~ 192 (377)
++||++|+.||+.||+..+. |-.....|+.+.++
T Consensus 126 ~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~ 162 (171)
T PF04799_consen 126 EDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELER 162 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888887777776443 33344444444443
No 71
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=22.32 E-value=3e+02 Score=32.10 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=27.0
Q ss_pred hhchhhceehhhHHHHHHhhcccccccccc
Q 017121 55 IPQLVSRIGVIGVTVMAVLAGFGAVNLPYS 84 (377)
Q Consensus 55 ~e~~l~RvgViGVt~mA~LSGfGAVs~Py~ 84 (377)
+++.+++|| +|+..-+.=||-++-.+||.
T Consensus 138 ~e~~le~vG-l~~~~~~s~s~~~~~~sp~~ 166 (1195)
T KOG4643|consen 138 AEKLLELVG-LEKKYRESRSGKELYKSPYD 166 (1195)
T ss_pred HHHHHHHhc-ccceeeccccCCCCCCCcch
Confidence 688999999 89999999999999999998
No 72
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=22.13 E-value=1.6e+02 Score=28.08 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 164 IMEAEVQALEELSKQLFLEIYELRQAKEA 192 (377)
Q Consensus 164 ~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 192 (377)
.|+.+-.-|+.....+=.++..|..+..|
T Consensus 189 ~l~~D~~~L~~~~~~~d~n~~~l~~~~~r 217 (251)
T PF09753_consen 189 ILKEDNKVLDRTEEGLDRNLSSLKRESKR 217 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666776667777654433
No 73
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=22.03 E-value=1.8e+02 Score=29.80 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=23.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 158 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 192 (377)
Q Consensus 158 ~~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 192 (377)
..++.+.|++|++-|+.+++.|=.-+..+++..+.
T Consensus 142 ~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q~~L~~ 176 (354)
T KOG2577|consen 142 VPERLNGLEAEVEDLSQEEDDLDQLIRDCQQNLRL 176 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999988887665555554444333
No 74
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=21.38 E-value=8.3e+02 Score=25.81 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 195 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~ 195 (377)
+++.++..++..++.-.+.+-.++.+++.+.++...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 466777777777777777777788888777665543
No 75
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=21.03 E-value=3.2e+02 Score=29.99 Aligned_cols=33 Identities=36% Similarity=0.459 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 161 DIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 193 (377)
Q Consensus 161 ~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~ 193 (377)
+++++..|+..-|++.++|-.|+..+.....|.
T Consensus 455 ~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs 487 (594)
T PF05667_consen 455 EIKEIEEEIRQKEELYKQLVKELEKLPKDVNRS 487 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 344444555555555555555555544333333
No 76
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=20.44 E-value=3e+02 Score=19.87 Aligned_cols=28 Identities=43% Similarity=0.439 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 161 DIKIMEAEVQALEELSKQLFLEIYELRQ 188 (377)
Q Consensus 161 ~i~~L~~EI~~Le~l~~~L~~el~~L~~ 188 (377)
.+..|+.++..|+.-..+|..++..|+.
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567777888888877777777777664
No 77
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=20.19 E-value=1.7e+02 Score=25.27 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q 017121 96 SEIKALERQLMQSIETCIAKKKKIILCQME 125 (377)
Q Consensus 96 ~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 125 (377)
.++..++++++.+++|+.+|-.++..++..
T Consensus 75 ~el~~l~~ry~t~LellGEK~E~veEL~~D 104 (120)
T PF12325_consen 75 QELEELQQRYQTLLELLGEKSEEVEELRAD 104 (120)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 567888888888888888888888777644
No 78
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=20.16 E-value=5.9e+02 Score=22.74 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 017121 167 AEVQALEELSKQLFLEIYELRQA 189 (377)
Q Consensus 167 ~EI~~Le~l~~~L~~el~~L~~~ 189 (377)
+|=..+.++.++||.++.+|...
T Consensus 92 ~dqk~a~~L~~~Lf~~L~~LD~A 114 (142)
T TIGR03042 92 KDQKEALALAKELKDDLEKLDEA 114 (142)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778889999999999853
Done!