Query 017121
Match_columns 377
No_of_seqs 151 out of 167
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 09:16:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017121.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017121hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 84.8 2 6.9E-05 27.0 4.8 28 161-188 3-30 (33)
2 3csx_A Putative uncharacterize 57.2 6.4 0.00022 30.7 2.6 33 157-189 12-44 (81)
3 2v71_A Nuclear distribution pr 52.0 1.3E+02 0.0044 26.8 10.7 30 161-190 89-118 (189)
4 2zqm_A Prefoldin beta subunit 51.5 87 0.003 24.7 9.0 35 160-194 77-111 (117)
5 3lay_A Zinc resistance-associa 51.1 1.3E+02 0.0043 26.4 11.0 35 156-193 109-143 (175)
6 3ra3_B P2F; coiled coil domain 50.4 7.5 0.00026 23.6 1.5 14 160-173 14-27 (28)
7 2js5_A Uncharacterized protein 48.4 18 0.00062 27.4 3.8 29 160-188 3-31 (71)
8 4fi5_A Nucleoprotein; structur 46.9 91 0.0031 25.6 8.0 81 97-201 23-103 (113)
9 2k48_A Nucleoprotein; viral pr 45.2 1.2E+02 0.0042 24.5 8.6 37 91-127 30-66 (107)
10 2l5g_A GPS2 protein, G protein 45.1 22 0.00074 23.6 3.3 25 159-183 14-38 (38)
11 1fmh_A General control protein 41.0 58 0.002 20.4 4.6 28 161-188 2-29 (33)
12 4etp_A Kinesin-like protein KA 39.9 84 0.0029 31.0 8.3 29 160-188 31-59 (403)
13 2wt7_A Proto-oncogene protein 39.7 63 0.0022 23.4 5.6 33 160-192 23-55 (63)
14 2yy0_A C-MYC-binding protein; 39.6 48 0.0016 23.5 4.7 35 157-191 16-50 (53)
15 1go4_E MAD1 (mitotic arrest de 38.1 97 0.0033 24.9 6.9 77 92-179 8-94 (100)
16 2ic9_A Nucleocapsid protein; h 35.0 1.7E+02 0.0059 23.3 8.4 81 97-201 6-86 (96)
17 1kd8_A GABH AIV, GCN4 acid bas 34.4 90 0.0031 20.5 4.9 32 161-192 2-33 (36)
18 3tnu_B Keratin, type II cytosk 33.8 69 0.0024 26.4 5.6 33 160-192 43-75 (129)
19 3q8t_A Beclin-1; autophagy, AT 33.7 78 0.0027 25.0 5.7 32 160-191 4-35 (96)
20 2l2l_B Methyl-CPG-binding doma 33.0 51 0.0017 21.7 3.6 17 92-108 6-22 (36)
21 3tnu_A Keratin, type I cytoske 32.1 76 0.0026 26.2 5.6 34 160-193 45-78 (131)
22 1t2k_D Cyclic-AMP-dependent tr 32.0 1E+02 0.0035 22.0 5.6 33 160-192 22-54 (61)
23 2jee_A YIIU; FTSZ, septum, coi 30.1 1.2E+02 0.0041 23.5 5.9 29 160-188 20-48 (81)
24 2aze_B Transcription factor E2 29.7 81 0.0028 25.4 5.2 35 161-195 7-41 (106)
25 1gd2_E Transcription factor PA 29.4 78 0.0027 23.7 4.7 33 159-191 28-60 (70)
26 2xdj_A Uncharacterized protein 29.1 1.2E+02 0.004 23.5 5.8 30 161-190 28-57 (83)
27 3nmd_A CGMP dependent protein 27.5 1.3E+02 0.0043 22.8 5.5 58 70-175 12-69 (72)
28 1jnm_A Proto-oncogene C-JUN; B 27.0 1.3E+02 0.0044 21.5 5.4 32 160-191 22-53 (62)
29 1t3j_A Mitofusin 1; coiled coi 26.5 1.5E+02 0.005 23.7 6.0 18 160-177 54-71 (96)
30 3twe_A Alpha4H; unknown functi 25.4 81 0.0028 18.9 3.2 16 177-192 4-19 (27)
31 1fxk_A Prefoldin; archaeal pro 25.4 2.3E+02 0.0079 21.7 9.0 30 160-189 72-101 (107)
32 2dgc_A Protein (GCN4); basic d 24.3 97 0.0033 22.5 4.3 31 160-190 30-60 (63)
33 1ci6_A Transcription factor AT 23.1 1.7E+02 0.0057 21.1 5.4 31 161-191 24-54 (63)
34 3na7_A HP0958; flagellar bioge 22.6 4.3E+02 0.015 23.8 10.8 32 160-191 90-121 (256)
35 3uux_B Mitochondrial division 22.4 4.6E+02 0.016 24.2 9.5 27 91-117 147-173 (242)
36 3vkg_A Dynein heavy chain, cyt 21.4 3.5E+02 0.012 34.1 10.7 17 198-216 2102-2118(3245)
37 1dh3_A Transcription factor CR 20.8 1.4E+02 0.0046 21.1 4.4 30 160-189 22-51 (55)
38 1g6u_A Domain swapped dimer; d 20.6 1.6E+02 0.0055 19.8 4.3 20 160-179 20-39 (48)
39 1aa0_A Fibritin, gpwac E; bact 20.1 2.6E+02 0.0089 22.6 6.3 61 118-195 25-85 (113)
40 4g1a_A AQ-C16C19 peptide; heli 20.1 52 0.0018 20.4 1.7 14 162-175 2-15 (32)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=84.78 E-value=2 Score=27.02 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 161 DIKIMEAEVQALEELSKQLFLEIYELRQ 188 (377)
Q Consensus 161 ~i~~L~~EI~~Le~l~~~L~~el~~L~~ 188 (377)
||++|++||.+|+.--..|-.|+..|++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5788888888887766666667766654
No 2
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=57.18 E-value=6.4 Score=30.69 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=25.1
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 157 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQA 189 (377)
Q Consensus 157 ~~~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~ 189 (377)
++++++.+|+.||.-|.....++-.|||||-..
T Consensus 12 ~t~~di~eLkkevkKL~~~A~q~kmdLHDLaEd 44 (81)
T 3csx_A 12 PTPEAVADLKKKVRKLNSKAGQMKMDLHDLAEG 44 (81)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344688999999999999999999999998654
No 3
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=51.98 E-value=1.3e+02 Score=26.84 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 161 DIKIMEAEVQALEELSKQLFLEIYELRQAK 190 (377)
Q Consensus 161 ~i~~L~~EI~~Le~l~~~L~~el~~L~~~~ 190 (377)
.++.|+.|+..|.....+|-..+.+|+..-
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~N 118 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQAN 118 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999988888887543
No 4
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=51.51 E-value=87 Score=24.66 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 194 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~ 194 (377)
+.+..++.+|+.|+.-...+-.++.+++....+..
T Consensus 77 ~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 77 EKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777888888888888888888876665544
No 5
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=51.10 E-value=1.3e+02 Score=26.42 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=23.9
Q ss_pred CchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 156 DQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 193 (377)
Q Consensus 156 ~~~~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~ 193 (377)
+.+++.+++|..||..|.. ++..+-.+++.+.+..
T Consensus 109 ~~DeakI~aL~~Ei~~Lr~---qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 109 SPDTAKINAVAKEMESLGQ---KLDEQRVKRDVAMAQA 143 (175)
T ss_dssp SCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 3456678888888876665 7777777776665443
No 6
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=50.36 E-value=7.5 Score=23.59 Aligned_cols=14 Identities=50% Similarity=0.688 Sum_probs=8.4
Q ss_pred HhHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALE 173 (377)
Q Consensus 160 ~~i~~L~~EI~~Le 173 (377)
+||++|+-||.+||
T Consensus 14 qeiaaleyeiaale 27 (28)
T 3ra3_B 14 QEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 45566666666654
No 7
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=48.41 E-value=18 Score=27.42 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=26.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQ 188 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~ 188 (377)
+++.+|+.||.-|.....++-.||+||-.
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaE 31 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAE 31 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 36789999999999999999999999865
No 8
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=46.94 E-value=91 Score=25.57 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhccchhhhhccchhhhhhcceeecccCCchhHhHHHHHHHHHHHHHHH
Q 017121 97 EIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEELS 176 (377)
Q Consensus 97 dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~i~~L~~EI~~Le~l~ 176 (377)
+|..+|..+.+.-..|..-|.+|..++...+.. +.+ .++ ++ +..-+.++++||+--
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~D-PDe-vNK-~t---------------------l~~R~~~Vs~lq~Ki 78 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKD-PDE-LNK-RT---------------------LTDREGVAVSIQAKI 78 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCH-HHH-HH---------------------HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcH-HHH-HH---------------------HHHHHHHHHHHHHHH
Confidence 466666666666566666677777777665431 111 111 11 223356788888877
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhh
Q 017121 177 KQLFLEIYELRQAKEAAAYSRTWRG 201 (377)
Q Consensus 177 ~~L~~el~~L~~~~~~~~~s~T~~G 201 (377)
.+|-..|.+.....+.....+-+.|
T Consensus 79 aeLKrqLAd~va~~k~~~k~~DPTG 103 (113)
T 4fi5_A 79 DELKRQLADRIATGKNLGKEQDPTG 103 (113)
T ss_dssp HHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHhcccccCCCCCCC
Confidence 7777777776654444433344444
No 9
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=45.22 E-value=1.2e+02 Score=24.54 Aligned_cols=37 Identities=8% Similarity=0.211 Sum_probs=30.4
Q ss_pred ccCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 017121 91 REIDESEIKALERQLMQSIETCIAKKKKIILCQMEMD 127 (377)
Q Consensus 91 r~V~~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~ 127 (377)
-|.|-+||..+|+.+.+.-..|..-|.++..++..++
T Consensus 30 ~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E 66 (107)
T 2k48_A 30 DPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVE 66 (107)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667789999999999888888888888888887654
No 10
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=45.14 E-value=22 Score=23.64 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=21.4
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHH
Q 017121 159 EQDIKIMEAEVQALEELSKQLFLEI 183 (377)
Q Consensus 159 ~~~i~~L~~EI~~Le~l~~~L~~el 183 (377)
.++|..|+.+.++|.+=+-|||.+|
T Consensus 14 keQi~~l~~kl~~LkeEKHQLFlQL 38 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQLFLQL 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999864
No 11
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=41.03 E-value=58 Score=20.37 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 161 DIKIMEAEVQALEELSKQLFLEIYELRQ 188 (377)
Q Consensus 161 ~i~~L~~EI~~Le~l~~~L~~el~~L~~ 188 (377)
+.++|+.|+..-|.-..||-.|+..|+.
T Consensus 2 evaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3568888888888888888878777653
No 12
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=39.85 E-value=84 Score=30.98 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=23.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQ 188 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~ 188 (377)
+++++++++...-|.+++.|++++.||+.
T Consensus 31 ~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 31 LGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34567777778888999999999999874
No 13
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=39.65 E-value=63 Score=23.36 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 192 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 192 (377)
+.+..|+.|++.|+.-...|-.++..|+.+...
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999998888888888888776654
No 14
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.55 E-value=48 Score=23.50 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=28.3
Q ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 157 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 191 (377)
Q Consensus 157 ~~~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~ 191 (377)
++..|...|++|.+.|+.=-..|-.+..+++++.+
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34467889999999999988888888888887654
No 15
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.12 E-value=97 Score=24.89 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhh----hccchhhhhccchhhhhhcceeecccCCchh------Hh
Q 017121 92 EIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDR----IQGSEEKLKARSFFKRIVGTVVRSVQDDQKE------QD 161 (377)
Q Consensus 92 ~V~~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~----~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~------~~ 161 (377)
|.|..++..+.+.++..-.--..=|++++.++.++.+ +..+.++.+ .+.-.++.... ++
T Consensus 8 ~~~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TK-----------VlH~~~NPa~~a~~~~~~~ 76 (100)
T 1go4_E 8 LFSREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTK-----------VLHMSLNPTSVARQRLRED 76 (100)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEE-----------EEEESSCHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCe-----------eeeecCChHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 017121 162 IKIMEAEVQALEELSKQL 179 (377)
Q Consensus 162 i~~L~~EI~~Le~l~~~L 179 (377)
+..|++|++.|...-+.|
T Consensus 77 ~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 77 HSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHH
No 16
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=35.04 E-value=1.7e+02 Score=23.29 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhccchhhhhccchhhhhhcceeecccCCchhHhHHHHHHHHHHHHHHH
Q 017121 97 EIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEELS 176 (377)
Q Consensus 97 dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~i~~L~~EI~~Le~l~ 176 (377)
||..+|..+.+.-..|..-|.+|..++..++.. +.+ .++ ++ +..-+.++++|+.=-
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~D-PDe-vNk-~~---------------------~~~R~~~V~~lq~Ki 61 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELD-PDD-VNK-ST---------------------LQSRRAAVSALETKL 61 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCH-HHH-HH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcH-HHH-HH---------------------HHHHHHHHHHHHHHH
Confidence 466666666666666666677777777665431 111 111 11 123355677777666
Q ss_pred HHHHHHHHHHHHHHHHHhccCchhh
Q 017121 177 KQLFLEIYELRQAKEAAAYSRTWRG 201 (377)
Q Consensus 177 ~~L~~el~~L~~~~~~~~~s~T~~G 201 (377)
.+|-..|.+...+.+......-+.|
T Consensus 62 ~elkr~lAd~v~~~k~~~k~~DpTG 86 (96)
T 2ic9_A 62 GELKRELADLIAAQKLASKPVDPTG 86 (96)
T ss_dssp HHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHhccccccCCCCCCC
Confidence 6666666666654443333333333
No 17
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=34.43 E-value=90 Score=20.47 Aligned_cols=32 Identities=28% Similarity=0.354 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 161 DIKIMEAEVQALEELSKQLFLEIYELRQAKEA 192 (377)
Q Consensus 161 ~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 192 (377)
.+++|+.+++.|..=...|-.|+..|+.....
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 35788888888888888888888888766543
No 18
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.81 E-value=69 Score=26.36 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=26.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 192 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 192 (377)
..+..|+.|+++++.+...|=..+.+++.+.+.
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 357788999999999999988888887765544
No 19
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=33.72 E-value=78 Score=24.96 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKE 191 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~ 191 (377)
+++.+++.|+..|+.=+..+..+|.++...++
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~ 35 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKNRK 35 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34566666666666666666666666654433
No 20
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=33.04 E-value=51 Score=21.74 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=14.2
Q ss_pred cCCHHHHHHHHHHHHhH
Q 017121 92 EIDESEIKALERQLMQS 108 (377)
Q Consensus 92 ~V~~~dI~~~e~~l~~t 108 (377)
.|||.||.+-|.+-..+
T Consensus 6 ~Vte~DIr~QE~rV~~a 22 (36)
T 2l2l_B 6 IVTDEDIRKQEERVQQV 22 (36)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHH
Confidence 58999999999877754
No 21
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=32.06 E-value=76 Score=26.20 Aligned_cols=34 Identities=15% Similarity=0.108 Sum_probs=27.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 193 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~ 193 (377)
..+..|+.|++++..+...|-..+.+++.+.+..
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~ 78 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKGRYCMQ 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999988888887665543
No 22
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=31.99 E-value=1e+02 Score=21.98 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 192 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~ 192 (377)
+.+..|+.+++.|++-...|-.++..|+.+...
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888888888887766543
No 23
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=30.11 E-value=1.2e+02 Score=23.46 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=22.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQ 188 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~ 188 (377)
+.|.-|++||+.|+.=..+|..|..++++
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788899999999888888887777443
No 24
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=29.72 E-value=81 Score=25.40 Aligned_cols=35 Identities=11% Similarity=0.047 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017121 161 DIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 195 (377)
Q Consensus 161 ~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~ 195 (377)
++..|++|++.|+..++.|=.-+..+++..+....
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788999999999998887777777665555443
No 25
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.40 E-value=78 Score=23.71 Aligned_cols=33 Identities=36% Similarity=0.447 Sum_probs=25.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 159 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 191 (377)
Q Consensus 159 ~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~ 191 (377)
++.|+.|+.++..||....++-.|...|+....
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999888887777776665443
No 26
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=29.06 E-value=1.2e+02 Score=23.48 Aligned_cols=30 Identities=3% Similarity=0.151 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 161 DIKIMEAEVQALEELSKQLFLEIYELRQAK 190 (377)
Q Consensus 161 ~i~~L~~EI~~Le~l~~~L~~el~~L~~~~ 190 (377)
++..|+.||..|.-.-..+-.++.++++++
T Consensus 28 Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQ 57 (83)
T 2xdj_A 28 QLSDNQSDIDSLRGQIQENQYQLNQVVERQ 57 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344555555555555445555555554433
No 27
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.49 E-value=1.3e+02 Score=22.81 Aligned_cols=58 Identities=22% Similarity=0.399 Sum_probs=0.0
Q ss_pred HHHhhccccccccccccccccccCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhccchhhhhccchhhhhhcce
Q 017121 70 MAVLAGFGAVNLPYSYLSLFIREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTV 149 (377)
Q Consensus 70 mA~LSGfGAVs~Py~~~~~f~r~V~~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~ 149 (377)
||..-|.|. |..+|..+..-.+-|..|-.+++.++.+....
T Consensus 12 ~~~~~~mgt-------------------i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ek-------------------- 52 (72)
T 3nmd_A 12 MASIEGRGS-------------------LRDLQYALQEKIEELRQRDALIDELELELDQK-------------------- 52 (72)
T ss_dssp -------CH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred hhhcccCCc-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q ss_pred eecccCCchhHhHHHHHHHHHHHHHH
Q 017121 150 VRSVQDDQKEQDIKIMEAEVQALEEL 175 (377)
Q Consensus 150 ~~~~~~~~~~~~i~~L~~EI~~Le~l 175 (377)
+++|+.|+.|++-++++
T Consensus 53 ---------d~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 53 ---------DELIQMLQNELDKYRSV 69 (72)
T ss_dssp ---------HHHHHHHHHHHHHTTTT
T ss_pred ---------HHHHHHHHHHHHHhhcc
No 28
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.02 E-value=1.3e+02 Score=21.52 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=25.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKE 191 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~ 191 (377)
+.+..|+.+++.|+.-...|-.++..|+.+..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888888888888888888888877654
No 29
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=26.49 E-value=1.5e+02 Score=23.68 Aligned_cols=18 Identities=22% Similarity=0.523 Sum_probs=11.2
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSK 177 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~ 177 (377)
+||++|++||..||.+.+
T Consensus 54 ~EI~~L~~eI~~LE~iqs 71 (96)
T 1t3j_A 54 EEIARLSKEIDQLEKMQN 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666666543
No 30
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.43 E-value=81 Score=18.88 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 017121 177 KQLFLEIYELRQAKEA 192 (377)
Q Consensus 177 ~~L~~el~~L~~~~~~ 192 (377)
.+||.|+.+|+.+.+.
T Consensus 4 delykeledlqerlrk 19 (27)
T 3twe_A 4 DELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4678888888766543
No 31
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=25.41 E-value=2.3e+02 Score=21.73 Aligned_cols=30 Identities=7% Similarity=0.305 Sum_probs=17.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQA 189 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~ 189 (377)
+.+..++.+|+.|+.-...+-.++.+++..
T Consensus 72 ~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 72 EKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666665543
No 32
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=24.28 E-value=97 Score=22.53 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=25.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAK 190 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~ 190 (377)
+.+..|+.+++.|+.-...|-.++..|+...
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999998888888888887654
No 33
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.10 E-value=1.7e+02 Score=21.12 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 161 DIKIMEAEVQALEELSKQLFLEIYELRQAKE 191 (377)
Q Consensus 161 ~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~ 191 (377)
.+..|+.|++.|+.-..+|-.++..|+.+.+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777766544
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=22.64 E-value=4.3e+02 Score=23.85 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQAKE 191 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~ 191 (377)
.+..+|+.||+.++.-...+-.++.++..+.+
T Consensus 90 kE~~aL~kEie~~~~~i~~lE~eile~~e~ie 121 (256)
T 3na7_A 90 RELRSLNIEEDIAKERSNQANREIENLQNEIK 121 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777776666655555555555444433
No 35
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=22.44 E-value=4.6e+02 Score=24.16 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=19.9
Q ss_pred ccCCHHHHHHHHHHHHhHHHHHHHHHH
Q 017121 91 REIDESEIKALERQLMQSIETCIAKKK 117 (377)
Q Consensus 91 r~V~~~dI~~~e~~l~~t~~~l~~Kk~ 117 (377)
|..+-..+......+.+.++|+.-+|.
T Consensus 147 ~SYSl~~Lkk~~~~i~~~LelL~IRK~ 173 (242)
T 3uux_B 147 SSYSPSALKSFSQTLVNSLEFLNIQKN 173 (242)
T ss_dssp GSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhHHH
Confidence 455667788888888888888855443
No 36
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.45 E-value=3.5e+02 Score=34.08 Aligned_cols=17 Identities=29% Similarity=0.247 Sum_probs=8.8
Q ss_pred chhhHHHHhhccceeehhh
Q 017121 198 TWRGHMQNLLGYALSIYCV 216 (377)
Q Consensus 198 T~~G~~~~~~g~~fsiYCv 216 (377)
++.|-.+ +.-+|..||-
T Consensus 2102 ~L~GD~L--LaaafisY~G 2118 (3245)
T 3vkg_A 2102 TVVGDVV--LASAFLAYIG 2118 (3245)
T ss_dssp HHHHHHH--HHHHHHHTGG
T ss_pred hccHHHH--HHHHHHHHcC
Confidence 3444433 3445667775
No 37
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=20.81 E-value=1.4e+02 Score=21.11 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=24.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQLFLEIYELRQA 189 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L~~el~~L~~~ 189 (377)
+.+..|+.++..|+.=...|-.++..|+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999888888888887653
No 38
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=20.59 E-value=1.6e+02 Score=19.77 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=14.2
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 017121 160 QDIKIMEAEVQALEELSKQL 179 (377)
Q Consensus 160 ~~i~~L~~EI~~Le~l~~~L 179 (377)
+++++|+.|..+||.--..|
T Consensus 20 eelaaleselqalekklaal 39 (48)
T 1g6u_A 20 EELAALESELQALEKKLAAL 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57888888888887643333
No 39
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=20.12 E-value=2.6e+02 Score=22.62 Aligned_cols=61 Identities=15% Similarity=0.219 Sum_probs=33.0
Q ss_pred HHHHHHhhhhhhccchhhhhccchhhhhhcceeecccCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017121 118 KIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 195 (377)
Q Consensus 118 rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~i~~L~~EI~~Le~l~~~L~~el~~L~~~~~~~~~ 195 (377)
++..+.....+..++++....+|+...+ ..-+.+|..+.+||+++|. ++.+++...+..+.
T Consensus 25 qv~~l~~~i~GTNPNGsTVEERGl~nsV----------k~~et~i~~~t~~v~t~k~-------~i~~~e~~vqalq~ 85 (113)
T 1aa0_A 25 QVVALNTLVNGTNPNGSTVEERGLTNSI----------KANETNIASVTQEVNTAKG-------NISSLQGDVQALQE 85 (113)
T ss_dssp HHHHHHHHHHCSCTTCSSHHHHCHHHHH----------HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHT
T ss_pred eEEEeeeeccccCCCCCeeeccccchhh----------hccccchhhhheeeccccc-------chhhhhhhhHHHHh
Confidence 4444444444444444444445544332 1234567788888887776 46666655555554
No 40
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=20.06 E-value=52 Score=20.45 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHH
Q 017121 162 IKIMEAEVQALEEL 175 (377)
Q Consensus 162 i~~L~~EI~~Le~l 175 (377)
|+.|++.|.+||.-
T Consensus 2 iaaleqkiaaleqk 15 (32)
T 4g1a_A 2 IAALEQKIAALEQK 15 (32)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 56788888888764
Done!