BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017122
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IPV|A Chain A, Crystal Structure Of Spatholobus Parviflorus Seed Lectin
pdb|3IPV|C Chain C, Crystal Structure Of Spatholobus Parviflorus Seed Lectin
Length = 251
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 257 ANKLAIQYNGRLKDLLAQLNENLPGATFVLANVYDLVLEVITNYDKYGFTTASRACCG 314
A K+ I YN +K L+A L +F+LA++ DL V+ + + GF+ A+ A G
Sbjct: 165 AAKVLITYNSAVKLLVASLVYPSSKTSFILADIVDLS-SVLPEWVRVGFSAATGASGG 221
>pdb|3IPV|B Chain B, Crystal Structure Of Spatholobus Parviflorus Seed Lectin
pdb|3IPV|D Chain D, Crystal Structure Of Spatholobus Parviflorus Seed Lectin
Length = 239
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 257 ANKLAIQYNGRLKDLLAQLNENLPGATFVLANVYDLVLEVITNYDKYGFTTASRACCG 314
A K+ I YN +K L+A L +F+LA++ DL V+ + + GF+ A+ A G
Sbjct: 165 AAKVLITYNSAVKLLVASLVYPSSKTSFILADIVDLS-SVLPEWVRVGFSAATGASKG 221
>pdb|3DKQ|A Chain A, Crystal Structure Of Putative Oxygenase (Yp_001051978.1)
From Shewanella Baltica Os155 At 2.26 A Resolution
pdb|3DKQ|B Chain B, Crystal Structure Of Putative Oxygenase (Yp_001051978.1)
From Shewanella Baltica Os155 At 2.26 A Resolution
pdb|3DKQ|C Chain C, Crystal Structure Of Putative Oxygenase (Yp_001051978.1)
From Shewanella Baltica Os155 At 2.26 A Resolution
Length = 243
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 198 ITESPDAFVDDMINHLRDQLTRLYRLDARKFVIGNVGPIGCIPYQKTINQLNENECVELA 257
+ E P+ F ++HLR+Q LDAR+++ GN +K QL++++ V +A
Sbjct: 21 LIEIPNVFSKQEVSHLREQ------LDARRWIDGNQTSGAXATTRKRNQQLDKDDPVAVA 74
>pdb|3FX6|A Chain A, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|C Chain C, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|E Chain E, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FVL|A Chain A, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|C Chain C, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|E Chain E, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
Length = 307
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 25/97 (25%)
Query: 280 PGATFVLANVYDLVLEVITNYDKYGFT-------------TASRACCG---NGGQFAGII 323
P T +L ++ D+ LE++TN D + FT T+S C G N AG
Sbjct: 94 PSFTAILDSM-DIFLEIVTNPDGFAFTHSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFG 152
Query: 324 PCGPTSSMCQDRSKHVFWDPYHPSEAANLIIAKQLLD 360
G +SS C + YH A + + K ++D
Sbjct: 153 KAGASSSPCS--------ETYHGKYANSEVEVKSIVD 181
>pdb|1HDQ|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With D-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|2CTB|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
pdb|2CTC|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
Length = 307
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 25/97 (25%)
Query: 280 PGATFVLANVYDLVLEVITNYDKYGFT-------------TASRACCG---NGGQFAGII 323
P T +L ++ D+ LE++TN D + FT T+S C G N AG
Sbjct: 94 PSFTAILDSM-DIFLEIVTNPDGFAFTHSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFG 152
Query: 324 PCGPTSSMCQDRSKHVFWDPYHPSEAANLIIAKQLLD 360
G +SS C + YH A + + K ++D
Sbjct: 153 KAGASSSPCS--------ETYHGKYANSEVEVKSIVD 181
>pdb|1CPX|A Chain A, Beta Form Of Carboxypeptidase A (Residues 3-307) From
Bovine Pancreas In An Orthorhombic Crystal Form With Two
Zinc Ions In The Active Site.
pdb|1F57|A Chain A, Carboxypeptidase A Complex With D-Cysteine At 1.75 A
pdb|1M4L|A Chain A, Structure Of Native Carboxypeptidase A At 1.25 Resolution
pdb|1ARL|A Chain A, Carboxypeptidase A With Zn Removed
pdb|2RFH|A Chain A, Crystal Structure Analysis Of
Cpa-2-Benzyl-3-Nitropropanoic Acid Complex
Length = 307
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 25/97 (25%)
Query: 280 PGATFVLANVYDLVLEVITNYDKYGFT-------------TASRACCG---NGGQFAGII 323
P T +L ++ D+ LE++TN D + FT T+S C G N AG
Sbjct: 94 PSFTAILDSM-DIFLEIVTNPDGFAFTHSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFG 152
Query: 324 PCGPTSSMCQDRSKHVFWDPYHPSEAANLIIAKQLLD 360
G +SS C + YH A + + K ++D
Sbjct: 153 KAGASSSPCS--------ETYHGKYANSEVEVKSIVD 181
>pdb|1PYT|B Chain B, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
pdb|3KGQ|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 25/97 (25%)
Query: 280 PGATFVLANVYDLVLEVITNYDKYGFT-------------TASRACCG---NGGQFAGII 323
P T +L ++ D+ LE++TN D + FT T+S C G N AG
Sbjct: 94 PSFTAILDSM-DIFLEIVTNPDGFAFTHSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFG 152
Query: 324 PCGPTSSMCQDRSKHVFWDPYHPSEAANLIIAKQLLD 360
G +SS C + YH A + + K ++D
Sbjct: 153 KAGASSSPCS--------ETYHGKYANSEVEVKSIVD 181
>pdb|1EE3|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 2 Mm Chloride In Monoclinic
Crystal Form
pdb|1ELL|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 0.25 M Chloride In Monoclinic
Crystal Form.
pdb|1ELM|P Chain P, Cadmium-Substituted Bovine Pacreatic Carboxypeptidase A
(Alfa-Form) At Ph 5.5 And 2 Mm Chloride In Monoclinic
Crystal Form.
pdb|1ZLH|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Bovine Carboxypeptidase A
pdb|2ABZ|A Chain A, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|2ABZ|B Chain B, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|1ARM|A Chain A, Carboxypeptidase A With Zn Replaced By Hg
pdb|1YME|A Chain A, Structure Of Carboxypeptidase
pdb|3I1U|A Chain A, Carboxypeptidase A Inhibited By A Thiirane Mechanism-Based
Inactivator
pdb|3HLP|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HLP|B Chain B, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HUV|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 25/97 (25%)
Query: 280 PGATFVLANVYDLVLEVITNYDKYGFT-------------TASRACCG---NGGQFAGII 323
P T +L ++ D+ LE++TN D + FT T+S C G N AG
Sbjct: 94 PSFTAILDSM-DIFLEIVTNPDGFAFTHSQNRLWRKTRSVTSSSLCVGVDANRNWDAGFG 152
Query: 324 PCGPTSSMCQDRSKHVFWDPYHPSEAANLIIAKQLLD 360
G +SS C + YH A + + K ++D
Sbjct: 153 KAGASSSPCS--------ETYHGKYANSEVEVKSIVD 181
>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
Length = 632
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 69/188 (36%), Gaps = 30/188 (15%)
Query: 172 SIFSITIGANDFLNNYLLPVLSVGARITESPDAFVDDMINHLRDQLTRLYRLDARKFVIG 231
+++ IT G NDFL +L D L D + L + AR V+
Sbjct: 148 ALYYITGGGNDFLQGRIL------------NDVQAQQAAGRLVDSVQALQQAGARYIVVW 195
Query: 232 NVGPIGCIPYQKTINQLNENECVELANKLAIQYNGRLKDLLAQLNENLPGATFVLANVYD 291
+ +G P T A++L+ +N L L+Q GA + N+
Sbjct: 196 LLPDLGLTP--ATFG----GPLQPFASQLSGTFNAELTAQLSQA-----GANVIPLNIPL 244
Query: 292 LVLEVITNYDKYGFTTASR--ACC--GNGGQFAGIIPCGPTSSMCQDRSKHVFWDPYHPS 347
L+ E + N +G C GNG + P + D SK +F D HP+
Sbjct: 245 LLKEGMANPASFGLAADQNLIGTCFSGNG---CTMNPTYGINGSTPDPSKLLFNDSVHPT 301
Query: 348 EAANLIIA 355
+IA
Sbjct: 302 ITGQRLIA 309
>pdb|1CBX|A Chain A, Crystal Structure Of The Complex Between Carboxypeptidase
A And The Biproduct Analog Inhibitor L-Benzylsuccinate
At 2.0 Angstroms Resolution
pdb|1CPS|A Chain A, Structural Comparison Of Sulfodiimine And Sulfonamide
Inhibitors In Their Complexes With Zinc Enzymes
Length = 307
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 25/97 (25%)
Query: 280 PGATFVLANVYDLVLEVITNYDKYGFT-------------TASRACCG---NGGQFAGII 323
P T +L ++ D+ LE++TN + + FT T+S C G N AG
Sbjct: 94 PSFTAILDSM-DIFLEIVTNPNGFAFTHSENRLWRKTRSVTSSSLCVGVDANRNWDAGFG 152
Query: 324 PCGPTSSMCQDRSKHVFWDPYHPSEAANLIIAKQLLD 360
G +SS C + YH A + + K ++D
Sbjct: 153 KAGASSSPCS--------ETYHGKYANSEVEVKSIVD 181
>pdb|1HDU|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HDU|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With Aminocarbonylphenylalanine At 1.75 A
pdb|1HEE|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|B Chain B, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|D Chain D, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1HEE|E Chain E, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With L-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|1IY7|A Chain A, Crystal Structure Of Cpa And Sulfamide-based Inhibitor
Complex
pdb|5CPA|A Chain A, Refined Crystal Structure Of Carboxypeptidase A At 1.54
Angstroms Resolution.
pdb|6CPA|A Chain A, Crystal Structure Of The Complex Of Carboxypeptidase A
With A Strongly Bound Phosphonate In A New Crystalline
Form: Comparison With Structures Of Other Complexes
pdb|7CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase A-
Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|8CPA|A Chain A, Comparison Of The Structures Of Three Carboxypeptidase A-
Phosphonate Complexes Determined By X-Ray
Crystallography
pdb|3CPA|A Chain A, X-Ray Crystallographic Investigation Of Substrate Binding
To Carboxypeptidase A At Subzero Temperature
pdb|4CPA|A Chain A, Refined Crystal Structure Of The Potato Inhibitor Complex
Of Carboxypeptidase A At 2.5 Angstroms Resolution
pdb|4CPA|B Chain B, Refined Crystal Structure Of The Potato Inhibitor Complex
Of Carboxypeptidase A At 2.5 Angstroms Resolution
Length = 307
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 25/97 (25%)
Query: 280 PGATFVLANVYDLVLEVITNYDKYGFT-------------TASRACCG---NGGQFAGII 323
P T +L ++ D+ LE++TN + + FT T+S C G N AG
Sbjct: 94 PSFTAILDSM-DIFLEIVTNPNGFAFTHSENRLWRKTRSVTSSSLCVGVDANRNWDAGFG 152
Query: 324 PCGPTSSMCQDRSKHVFWDPYHPSEAANLIIAKQLLD 360
G +SS C + YH A + + K ++D
Sbjct: 153 KAGASSSPCS--------ETYHGKYANSEVEVKSIVD 181
>pdb|1BAV|A Chain A, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|B Chain B, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|C Chain C, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
pdb|1BAV|D Chain D, Carboxypeptidase A Complexed With
2-Benzyl-3-Iodo-Propanoic Acid (Bip)
Length = 309
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 25/97 (25%)
Query: 280 PGATFVLANVYDLVLEVITNYDKYGFT-------------TASRACCG---NGGQFAGII 323
P T +L ++ D+ LE++TN + + FT T+S C G N AG
Sbjct: 94 PSFTAILDSM-DIFLEIVTNPNGFAFTHSENRLWRKTRSVTSSSLCVGVDANRNWDAGFG 152
Query: 324 PCGPTSSMCQDRSKHVFWDPYHPSEAANLIIAKQLLD 360
G +SS C + YH A + + K ++D
Sbjct: 153 KAGASSSPCS--------ETYHGKYANSEVEVKSIVD 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,758,641
Number of Sequences: 62578
Number of extensions: 440101
Number of successful extensions: 1057
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1056
Number of HSP's gapped (non-prelim): 16
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)