Query 017125
Match_columns 377
No_of_seqs 149 out of 1400
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 05:49:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017125.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017125hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 8.6E-85 1.9E-89 616.3 34.2 372 6-377 4-375 (375)
2 PTZ00281 actin; Provisional 100.0 3.2E-84 6.9E-89 614.2 34.2 376 2-377 1-376 (376)
3 PTZ00466 actin-like protein; P 100.0 9.1E-84 2E-88 609.8 35.6 371 5-377 10-380 (380)
4 KOG0676 Actin and related prot 100.0 5.6E-84 1.2E-88 590.4 24.8 369 4-377 4-372 (372)
5 PTZ00004 actin-2; Provisional 100.0 7.9E-82 1.7E-86 598.7 34.5 376 2-377 1-378 (378)
6 PTZ00280 Actin-related protein 100.0 8.4E-76 1.8E-80 564.3 34.8 370 7-376 4-409 (414)
7 PF00022 Actin: Actin; InterP 100.0 3E-76 6.5E-81 566.8 29.1 368 4-377 1-393 (393)
8 smart00268 ACTIN Actin. ACTIN 100.0 6.2E-75 1.4E-79 553.4 34.2 369 8-377 2-373 (373)
9 KOG0679 Actin-related protein 100.0 2.2E-74 4.9E-79 512.0 26.6 369 3-376 7-425 (426)
10 cd00012 ACTIN Actin; An ubiqui 100.0 3.4E-72 7.4E-77 533.9 33.6 367 9-375 1-371 (371)
11 KOG0677 Actin-related protein 100.0 1.2E-72 2.6E-77 476.6 21.4 371 5-375 2-386 (389)
12 COG5277 Actin and related prot 100.0 1.3E-68 2.7E-73 507.5 29.1 374 4-377 3-444 (444)
13 KOG0680 Actin-related protein 100.0 4.4E-67 9.5E-72 454.8 25.5 362 6-377 2-399 (400)
14 KOG0681 Actin-related protein 100.0 1.9E-55 4.2E-60 405.4 23.0 365 6-375 22-638 (645)
15 KOG0678 Actin-related protein 100.0 1.7E-52 3.6E-57 364.5 15.4 368 6-374 3-407 (415)
16 KOG0797 Actin-related protein 100.0 1.5E-38 3.2E-43 291.8 19.2 312 66-377 178-615 (618)
17 PRK13930 rod shape-determining 100.0 1.3E-37 2.8E-42 292.6 16.6 307 9-351 10-328 (335)
18 PRK13927 rod shape-determining 100.0 4.8E-36 1E-40 281.6 17.1 305 9-351 7-324 (334)
19 TIGR00904 mreB cell shape dete 100.0 2.7E-35 5.8E-40 276.1 16.9 311 10-351 5-327 (333)
20 PRK13929 rod-share determining 100.0 1.1E-34 2.4E-39 271.4 16.7 302 9-348 6-323 (335)
21 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 7.1E-33 1.5E-37 253.7 14.3 305 8-350 2-320 (326)
22 PRK13928 rod shape-determining 100.0 1.5E-31 3.2E-36 251.0 17.9 306 10-351 6-323 (336)
23 COG1077 MreB Actin-like ATPase 99.9 7.2E-26 1.6E-30 200.0 14.4 313 7-350 6-330 (342)
24 TIGR02529 EutJ ethanolamine ut 99.9 1.9E-21 4E-26 172.9 17.5 208 70-347 28-238 (239)
25 PRK15080 ethanolamine utilizat 99.8 8.5E-20 1.8E-24 165.1 19.6 243 5-349 22-267 (267)
26 CHL00094 dnaK heat shock prote 99.8 2E-19 4.4E-24 181.3 15.3 297 8-351 3-376 (621)
27 PTZ00400 DnaK-type molecular c 99.8 4.4E-19 9.5E-24 179.5 15.8 216 102-351 174-415 (663)
28 TIGR01991 HscA Fe-S protein as 99.8 4.2E-19 9.2E-24 178.0 14.1 297 9-351 1-360 (599)
29 PLN03184 chloroplast Hsp70; Pr 99.8 9.6E-19 2.1E-23 177.1 15.6 297 8-351 40-413 (673)
30 TIGR02350 prok_dnaK chaperone 99.8 5.7E-19 1.2E-23 177.9 13.5 296 9-351 2-372 (595)
31 PRK00290 dnaK molecular chaper 99.8 6.3E-19 1.4E-23 178.2 13.5 297 8-351 3-374 (627)
32 PRK01433 hscA chaperone protei 99.8 1.5E-18 3.3E-23 173.0 15.4 225 82-351 120-356 (595)
33 PRK13411 molecular chaperone D 99.8 1.4E-18 3E-23 175.7 14.8 215 102-351 133-376 (653)
34 PRK13410 molecular chaperone D 99.8 2E-18 4.4E-23 174.3 15.1 297 8-351 3-376 (668)
35 PRK05183 hscA chaperone protei 99.8 2E-18 4.2E-23 173.6 13.9 295 8-351 20-376 (616)
36 PTZ00186 heat shock 70 kDa pre 99.8 3E-18 6.5E-23 172.3 15.1 218 102-351 160-401 (657)
37 PTZ00009 heat shock 70 kDa pro 99.8 1.2E-17 2.5E-22 169.2 15.8 215 102-351 140-381 (653)
38 PRK11678 putative chaperone; P 99.7 1.1E-15 2.3E-20 147.6 14.1 180 9-192 2-260 (450)
39 COG0443 DnaK Molecular chapero 99.7 3.1E-15 6.8E-20 148.6 17.7 306 6-351 4-357 (579)
40 PF00012 HSP70: Hsp70 protein; 99.6 9.5E-16 2.1E-20 155.5 11.8 215 103-351 136-376 (602)
41 PRK09472 ftsA cell division pr 99.6 3.4E-14 7.3E-19 137.1 20.2 202 114-351 164-388 (420)
42 TIGR01174 ftsA cell division p 99.6 1.3E-14 2.9E-19 138.1 17.1 175 114-321 156-340 (371)
43 COG0849 ftsA Cell division ATP 99.6 2.5E-14 5.4E-19 134.9 15.2 201 114-351 163-380 (418)
44 COG4820 EutJ Ethanolamine util 99.4 1.1E-13 2.4E-18 114.2 3.1 237 4-344 26-267 (277)
45 KOG0100 Molecular chaperones G 99.4 3.9E-11 8.4E-16 109.2 17.6 214 103-351 173-411 (663)
46 KOG0101 Molecular chaperones H 99.4 1.8E-11 3.8E-16 119.3 16.0 214 103-351 144-383 (620)
47 TIGR01175 pilM type IV pilus a 99.3 8.2E-11 1.8E-15 111.3 18.9 155 114-320 141-307 (348)
48 PRK13917 plasmid segregation p 99.3 2E-10 4.3E-15 107.9 17.1 185 8-198 3-233 (344)
49 PF11104 PilM_2: Type IV pilus 99.2 3E-10 6.6E-15 106.9 16.4 193 80-333 86-306 (340)
50 TIGR03739 PRTRC_D PRTRC system 99.2 3.6E-10 7.9E-15 105.3 15.6 186 12-201 2-219 (320)
51 KOG0104 Molecular chaperones G 99.1 7E-10 1.5E-14 108.2 13.6 95 102-197 158-275 (902)
52 COG4972 PilM Tfp pilus assembl 99.0 2E-08 4.4E-13 89.9 15.4 148 122-320 154-312 (354)
53 KOG0103 Molecular chaperones H 98.9 4.2E-08 9.1E-13 95.5 14.8 95 102-197 137-246 (727)
54 PRK10719 eutA reactivating fac 98.7 4.4E-07 9.5E-12 86.2 15.9 161 5-190 4-184 (475)
55 KOG0102 Molecular chaperones m 98.5 2.2E-06 4.8E-11 81.5 13.7 186 103-316 161-374 (640)
56 PF06406 StbA: StbA protein; 98.5 4E-07 8.6E-12 84.8 8.1 70 128-197 137-212 (318)
57 TIGR00241 CoA_E_activ CoA-subs 98.4 9.6E-06 2.1E-10 72.9 15.7 43 298-348 206-248 (248)
58 COG1924 Activator of 2-hydroxy 98.2 8.7E-05 1.9E-09 68.3 15.0 45 299-351 346-390 (396)
59 TIGR03192 benz_CoA_bzdQ benzoy 98.1 3.1E-05 6.8E-10 70.0 11.1 48 295-350 239-287 (293)
60 TIGR02261 benz_CoA_red_D benzo 97.9 0.00015 3.2E-09 64.7 11.9 50 297-349 213-262 (262)
61 TIGR03286 methan_mark_15 putat 97.9 0.00016 3.6E-09 68.0 11.9 46 297-350 357-402 (404)
62 PF06277 EutA: Ethanolamine ut 97.7 0.00017 3.8E-09 68.8 8.7 174 7-202 3-204 (473)
63 PRK13317 pantothenate kinase; 97.2 0.018 3.8E-07 52.4 15.3 52 294-350 221-273 (277)
64 PF14450 FtsA: Cell division p 96.2 0.049 1.1E-06 42.9 9.3 58 153-221 2-70 (120)
65 TIGR02259 benz_CoA_red_A benzo 96.1 0.015 3.2E-07 54.7 6.5 51 296-349 382-432 (432)
66 PRK11031 guanosine pentaphosph 96.0 0.035 7.5E-07 55.1 9.3 85 105-191 80-171 (496)
67 TIGR03706 exo_poly_only exopol 96.0 0.028 6.1E-07 51.9 8.1 84 106-192 75-165 (300)
68 PF01869 BcrAD_BadFG: BadF/Bad 95.9 0.014 3.1E-07 53.0 5.7 48 299-349 224-271 (271)
69 PF08841 DDR: Diol dehydratase 95.9 0.013 2.8E-07 52.0 4.8 95 113-217 92-191 (332)
70 COG1548 Predicted transcriptio 95.3 0.089 1.9E-06 46.2 7.7 23 149-171 129-151 (330)
71 TIGR00744 ROK_glcA_fam ROK fam 95.0 0.9 2E-05 42.2 14.5 52 121-174 89-147 (318)
72 PRK10854 exopolyphosphatase; P 94.8 0.11 2.4E-06 51.8 8.1 83 105-190 85-175 (513)
73 PRK09557 fructokinase; Reviewe 94.6 1.2 2.7E-05 41.0 14.1 53 121-175 88-147 (301)
74 COG0248 GppA Exopolyphosphatas 94.5 0.09 1.9E-06 51.7 6.5 80 110-191 82-168 (492)
75 TIGR03123 one_C_unchar_1 proba 94.4 0.29 6.4E-06 45.3 9.3 28 147-174 125-152 (318)
76 COG4819 EutA Ethanolamine util 94.3 0.25 5.4E-06 45.1 8.3 156 4-187 2-180 (473)
77 PRK03011 butyrate kinase; Prov 94.0 5.3 0.00012 37.8 17.1 48 297-348 297-344 (358)
78 TIGR00555 panK_eukar pantothen 93.8 0.94 2E-05 41.2 11.1 68 275-347 209-278 (279)
79 PF01968 Hydantoinase_A: Hydan 92.4 0.13 2.8E-06 47.3 3.5 29 146-174 73-101 (290)
80 PF02541 Ppx-GppA: Ppx/GppA ph 91.6 0.38 8.3E-06 44.1 5.7 83 106-191 61-151 (285)
81 PF07318 DUF1464: Protein of u 90.1 1.4 3E-05 41.0 7.7 50 298-351 263-315 (343)
82 COG2441 Predicted butyrate kin 90.1 0.22 4.7E-06 44.4 2.4 73 276-351 257-332 (374)
83 COG1521 Pantothenate kinase ty 88.6 6.3 0.00014 35.2 10.5 18 9-26 2-19 (251)
84 PRK13324 pantothenate kinase; 86.1 14 0.00031 33.2 11.5 18 9-26 2-19 (258)
85 PRK13321 pantothenate kinase; 85.8 7.2 0.00016 35.0 9.6 19 9-27 2-20 (256)
86 PF03309 Pan_kinase: Type III 85.0 7 0.00015 33.8 8.8 18 10-27 2-19 (206)
87 TIGR02707 butyr_kinase butyrat 84.5 37 0.0008 32.1 15.2 26 151-177 175-200 (351)
88 KOG2708 Predicted metalloprote 82.7 2 4.3E-05 37.4 4.2 53 147-200 121-173 (336)
89 PRK13318 pantothenate kinase; 82.5 21 0.00046 32.0 11.2 18 9-26 2-19 (258)
90 TIGR00671 baf pantothenate kin 81.9 11 0.00024 33.5 9.0 18 10-27 2-19 (243)
91 PRK13329 pantothenate kinase; 79.7 15 0.00033 32.9 9.1 17 9-25 3-19 (249)
92 PRK00976 hypothetical protein; 79.5 12 0.00027 34.7 8.5 27 146-173 145-171 (326)
93 PF08735 DUF1786: Putative pyr 77.1 23 0.0005 31.6 9.2 46 127-173 138-190 (254)
94 PRK13326 pantothenate kinase; 76.7 26 0.00057 31.6 9.7 19 9-27 8-26 (262)
95 PRK13320 pantothenate kinase; 74.5 32 0.0007 30.7 9.7 18 9-26 4-21 (244)
96 COG0145 HyuA N-methylhydantoin 73.3 3.1 6.7E-05 42.8 3.2 30 144-173 270-301 (674)
97 smart00842 FtsA Cell division 58.6 26 0.00057 29.6 5.7 24 72-96 36-59 (187)
98 PF03702 UPF0075: Uncharacteri 56.1 5.7 0.00012 37.7 1.2 26 296-321 285-310 (364)
99 PRK05082 N-acetylmannosamine k 55.3 18 0.00038 33.1 4.3 51 123-175 90-146 (291)
100 PRK05082 N-acetylmannosamine k 54.1 93 0.002 28.3 8.9 67 276-350 221-287 (291)
101 PRK09698 D-allose kinase; Prov 52.0 26 0.00057 32.1 4.9 69 276-351 224-296 (302)
102 PRK13322 pantothenate kinase; 51.8 1.8E+02 0.0038 26.0 10.0 18 9-26 2-19 (246)
103 PRK13331 pantothenate kinase; 51.1 16 0.00035 32.7 3.2 27 1-27 1-27 (251)
104 PRK13310 N-acetyl-D-glucosamin 50.7 23 0.00051 32.5 4.4 53 121-175 88-147 (303)
105 PRK00292 glk glucokinase; Prov 48.2 2E+02 0.0043 26.5 10.2 47 123-170 84-147 (316)
106 PF02782 FGGY_C: FGGY family o 47.7 23 0.00049 30.1 3.6 48 295-351 149-196 (198)
107 smart00732 YqgFc Likely ribonu 43.1 26 0.00056 25.8 2.9 19 8-26 2-20 (99)
108 PF03727 Hexokinase_2: Hexokin 42.2 26 0.00056 31.2 3.1 50 299-351 189-240 (243)
109 PRK13310 N-acetyl-D-glucosamin 41.6 2.2E+02 0.0048 26.0 9.4 67 276-349 233-300 (303)
110 TIGR03367 queuosine_QueD queuo 40.9 25 0.00053 26.1 2.4 49 74-129 42-90 (92)
111 PRK14101 bifunctional glucokin 39.4 1.6E+02 0.0035 30.4 8.8 24 123-146 99-122 (638)
112 TIGR01319 glmL_fam conserved h 36.9 20 0.00044 34.9 1.6 24 150-173 249-272 (463)
113 PTZ00340 O-sialoglycoprotein e 36.9 21 0.00047 33.5 1.8 50 296-350 264-319 (345)
114 PRK09585 anmK anhydro-N-acetyl 36.6 23 0.00051 33.6 2.0 23 297-319 288-310 (365)
115 PRK13311 N-acetyl-D-glucosamin 36.3 3E+02 0.0066 24.4 9.2 53 121-175 88-147 (256)
116 COG4012 Uncharacterized protei 35.5 2E+02 0.0043 26.0 7.3 44 150-195 227-273 (342)
117 smart00732 YqgFc Likely ribonu 34.6 1.1E+02 0.0024 22.3 5.2 44 152-195 3-47 (99)
118 KOG1386 Nucleoside phosphatase 32.5 4.8E+02 0.01 25.9 10.0 86 82-168 65-180 (501)
119 PF13941 MutL: MutL protein 31.4 29 0.00064 34.0 1.8 74 102-175 178-273 (457)
120 cd08627 PI-PLCc_gamma1 Catalyt 30.1 83 0.0018 27.7 4.2 45 82-132 74-118 (229)
121 PRK15027 xylulokinase; Provisi 29.9 40 0.00086 33.4 2.5 48 296-351 387-434 (484)
122 TIGR03192 benz_CoA_bzdQ benzoy 29.8 92 0.002 28.6 4.6 47 152-200 34-83 (293)
123 PLN02666 5-oxoprolinase 28.7 54 0.0012 36.7 3.5 21 150-171 314-334 (1275)
124 TIGR00329 gcp_kae1 metallohydr 28.2 50 0.0011 30.5 2.7 35 296-335 259-293 (305)
125 cd08626 PI-PLCc_beta4 Catalyti 27.9 90 0.002 28.0 4.1 45 82-132 76-120 (257)
126 cd08630 PI-PLCc_delta3 Catalyt 27.3 94 0.002 27.9 4.1 45 82-132 74-118 (258)
127 cd08596 PI-PLCc_epsilon Cataly 27.1 93 0.002 27.9 4.1 44 82-131 74-117 (254)
128 COG0533 QRI7 Metal-dependent p 27.0 46 0.001 31.1 2.2 55 292-351 258-318 (342)
129 cd08595 PI-PLCc_zeta Catalytic 26.7 95 0.0021 27.9 4.0 45 82-132 74-118 (257)
130 cd08632 PI-PLCc_eta1 Catalytic 26.6 1E+02 0.0022 27.6 4.1 45 82-132 74-118 (253)
131 cd08592 PI-PLCc_gamma Catalyti 26.2 1E+02 0.0022 27.2 4.0 44 82-131 74-117 (229)
132 cd08631 PI-PLCc_delta4 Catalyt 26.1 98 0.0021 27.8 4.0 44 82-131 74-117 (258)
133 cd08594 PI-PLCc_eta Catalytic 26.1 1E+02 0.0023 27.1 4.1 44 82-131 74-117 (227)
134 KOG1794 N-Acetylglucosamine ki 25.9 4E+02 0.0087 24.6 7.7 91 82-173 47-143 (336)
135 cd08629 PI-PLCc_delta1 Catalyt 25.6 1E+02 0.0022 27.7 4.0 44 82-131 74-117 (258)
136 cd08598 PI-PLC1c_yeast Catalyt 25.4 1E+02 0.0023 27.2 4.0 44 82-131 74-117 (231)
137 cd08593 PI-PLCc_delta Catalyti 25.3 1E+02 0.0022 27.7 4.0 44 82-131 74-117 (257)
138 PF13941 MutL: MutL protein 25.3 43 0.00093 32.9 1.8 23 9-31 2-26 (457)
139 cd08591 PI-PLCc_beta Catalytic 25.1 1.1E+02 0.0023 27.6 4.0 45 82-132 76-120 (257)
140 COG1149 MinD superfamily P-loo 24.8 86 0.0019 28.4 3.4 39 101-140 186-224 (284)
141 cd08633 PI-PLCc_eta2 Catalytic 24.6 1.1E+02 0.0025 27.3 4.1 45 82-132 74-118 (254)
142 TIGR03286 methan_mark_15 putat 24.5 1.5E+02 0.0032 28.6 5.1 50 151-200 145-194 (404)
143 TIGR01312 XylB D-xylulose kina 24.3 92 0.002 30.7 4.0 47 296-351 391-437 (481)
144 KOG2960 Protein involved in th 23.2 88 0.0019 27.3 3.0 71 276-351 54-127 (328)
145 PF00370 FGGY_N: FGGY family o 23.1 62 0.0013 28.6 2.3 19 9-27 2-20 (245)
146 PRK14878 UGMP family protein; 23.0 74 0.0016 29.7 2.9 35 296-335 242-276 (323)
147 KOG1369 Hexokinase [Carbohydra 22.7 85 0.0018 30.9 3.2 52 299-353 415-468 (474)
148 cd08558 PI-PLCc_eukaryota Cata 22.7 1.3E+02 0.0028 26.5 4.0 45 82-132 74-118 (226)
149 PTZ00294 glycerol kinase-like 22.4 1.1E+02 0.0024 30.4 4.2 47 296-351 407-453 (504)
150 cd08597 PI-PLCc_PRIP_metazoa C 21.7 1.3E+02 0.0028 27.1 4.0 45 82-132 74-118 (260)
151 PLN02596 hexokinase-like 21.3 1.1E+02 0.0025 30.3 3.8 44 306-352 439-484 (490)
152 TIGR01311 glycerol_kin glycero 20.9 86 0.0019 31.1 3.0 47 296-351 400-446 (493)
153 PRK13333 pantothenate kinase; 20.7 1.1E+02 0.0025 26.4 3.3 35 127-171 70-104 (206)
154 PTZ00107 hexokinase; Provision 20.2 1.2E+02 0.0026 30.0 3.7 51 299-352 408-460 (464)
155 cd08628 PI-PLCc_gamma2 Catalyt 20.0 1.6E+02 0.0034 26.5 4.1 44 82-131 74-117 (254)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=8.6e-85 Score=616.31 Aligned_cols=372 Identities=56% Similarity=1.023 Sum_probs=348.2
Q ss_pred CCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHHH
Q 017125 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDME 85 (377)
Q Consensus 6 ~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~ 85 (377)
..++||||+||+++|+||+|++.|++++||+++++++.....+...+++++|+++...++...+++|+++|.|.|||.+|
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e 83 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIE 83 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHH
Confidence 35689999999999999999999999999999998765322222345678999998888888999999999999999999
Q ss_pred HHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceEEE
Q 017125 86 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 165 (377)
Q Consensus 86 ~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~ 165 (377)
.+|+|+|.+.|.++++++|+++++|+++++..|++++|++||.|++|++++.+++++++|++|+++|+|||+|++.|+|+
T Consensus 84 ~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~ 163 (375)
T PTZ00452 84 IIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCV 163 (375)
T ss_pred HHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEE
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC
Q 017125 166 PIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP 245 (377)
Q Consensus 166 ~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp 245 (377)
||+||+++.++..++++||++++++|.++|.++++.+.+..+.+.++++|+++||++.+++++.+.........+.|.+|
T Consensus 164 PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LP 243 (375)
T PTZ00452 164 PVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLP 243 (375)
T ss_pred EEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECC
Confidence 99999999999999999999999999999999998888777788999999999999999887776544434456789999
Q ss_pred CCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCC
Q 017125 246 DGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS 325 (377)
Q Consensus 246 d~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~ 325 (377)
||+.+.++.+||.++|+||+|++.+.+..||+++|.++|.+||.+.|+.|++||||+||+|++|||.+||++||++++|.
T Consensus 244 Dg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~ 323 (375)
T PTZ00452 244 DGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPS 323 (375)
T ss_pred CCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125 326 SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 326 ~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 377 (377)
..++++..+++|.+++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus 324 ~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 324 QLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred CceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 8899999999999999999999999999999999999999999999999997
No 2
>PTZ00281 actin; Provisional
Probab=100.00 E-value=3.2e-84 Score=614.22 Aligned_cols=376 Identities=91% Similarity=1.409 Sum_probs=353.3
Q ss_pred CCCCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCH
Q 017125 2 ADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNW 81 (377)
Q Consensus 2 ~~~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~ 81 (377)
|.+|+.++||||+||+++|+||+|++.|++++||+++++++...+.+.++.+.++|+++...+....+++|+++|.+.||
T Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dw 80 (376)
T PTZ00281 1 MDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 80 (376)
T ss_pred CCCCcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCH
Confidence 45778899999999999999999999999999999999887655444445678899998877777889999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCc
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 161 (377)
+.++.+|+++|.+.|.++++++|+++++|+++++..|+++++++||.|+++++++.+++++++|++|++||+|||+|++.
T Consensus 81 d~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~ 160 (376)
T PTZ00281 81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGV 160 (376)
T ss_pred HHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCce
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceE
Q 017125 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKS 241 (377)
Q Consensus 162 t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~ 241 (377)
|+|+||+||+++.++..++++||++++++|+++|.++++.+....+.+.++++|+++|+|+.+++.+++.........+.
T Consensus 161 t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (376)
T PTZ00281 161 SHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKS 240 (376)
T ss_pred EEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCccccee
Confidence 99999999999999999999999999999999999988888777778899999999999999988777655444455678
Q ss_pred EEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHh
Q 017125 242 YELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITA 321 (377)
Q Consensus 242 ~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~ 321 (377)
|.+|||+.+.++.+||.++|+||+|++.+.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||+.
T Consensus 241 y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~ 320 (376)
T PTZ00281 241 YELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTA 320 (376)
T ss_pred EECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125 322 LAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 322 ~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 377 (377)
++|...+++++.+++|++++|+|||++|++++|++.||||+||+|+|+++++||||
T Consensus 321 ~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 321 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred hCCCCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 99988899999999999999999999999999999999999999999999999997
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=9.1e-84 Score=609.75 Aligned_cols=371 Identities=52% Similarity=0.965 Sum_probs=347.2
Q ss_pred CCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHH
Q 017125 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDM 84 (377)
Q Consensus 5 ~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~ 84 (377)
.+..+||||+||+++|+||+|++.|++++||++++++....+.+...++.++|+++...++...+++|+++|.|.|||.+
T Consensus 10 ~~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~ 89 (380)
T PTZ00466 10 YSNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDM 89 (380)
T ss_pred ccCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHH
Confidence 34678999999999999999999999999999999987655444445678999998877777889999999999999999
Q ss_pred HHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceEE
Q 017125 85 EKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 164 (377)
Q Consensus 85 ~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v 164 (377)
|.+|+|+| +.|++.++++|+++++++++++..|+++++++||.|+++++++.++++|++|++|+++|+|||+|++.|+|
T Consensus 90 e~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v 168 (380)
T PTZ00466 90 ENIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHC 168 (380)
T ss_pred HHHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEE
Confidence 99999998 88999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEc
Q 017125 165 VPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYEL 244 (377)
Q Consensus 165 ~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 244 (377)
+||+||+++.++..++++||++++++|.++|.+++..+....+.+.++++|+++|+|+.|+.++.+... .....+.|.+
T Consensus 169 ~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~-~~~~~~~y~L 247 (380)
T PTZ00466 169 VSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSE-KALTTLPYIL 247 (380)
T ss_pred EEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhcc-ccccceeEEC
Confidence 999999999999999999999999999999998888887777888999999999999999877665432 2234578999
Q ss_pred CCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCC
Q 017125 245 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAP 324 (377)
Q Consensus 245 pd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~ 324 (377)
|||..+.++.+||++||+||+|++++.+..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||+.+.|
T Consensus 248 Pdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p 327 (380)
T PTZ00466 248 PDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAP 327 (380)
T ss_pred CCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125 325 SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 325 ~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 377 (377)
.+.++++..+++|++++|+|||++|++.+|++.||||+||+|+|+++++||||
T Consensus 328 ~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 328 KDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred CCceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 88899999999999999999999999999999999999999999999999997
No 4
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=5.6e-84 Score=590.44 Aligned_cols=369 Identities=81% Similarity=1.311 Sum_probs=351.7
Q ss_pred CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHH
Q 017125 4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDD 83 (377)
Q Consensus 4 ~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~ 83 (377)
..+.++||||+||..+|+||+|++.|+.++|+.++++++..++.+..+++.+||+++...+ .+++|+++|.+.||++
T Consensus 4 ~~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~wd~ 80 (372)
T KOG0676|consen 4 ADDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR---TLKYPIERGIVTDWDD 80 (372)
T ss_pred cCCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccc---cccCccccccccchHH
Confidence 4556999999999999999999999999999999999999999888899999999998887 6799999999999999
Q ss_pred HHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceE
Q 017125 84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 163 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 163 (377)
++.+|.|+|+..|.+.|+++|+++++|+++|+..|+++++++||.|++|++++...+++ |++|++||+|||+|++.|+
T Consensus 81 me~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~ 158 (372)
T KOG0676|consen 81 MEKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTH 158 (372)
T ss_pred HHHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCcee
Confidence 99999999999999999999999999999999999999999999999999999554444 9999999999999999999
Q ss_pred EEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEE
Q 017125 164 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYE 243 (377)
Q Consensus 164 v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
++||++|++++++...+++||+++++++...|.++|+.+....+.++++++|+++||++.+++++++...........|+
T Consensus 159 ~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~ 238 (372)
T KOG0676|consen 159 VVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYE 238 (372)
T ss_pred eeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhhhccccccccccccc
Confidence 99999999999999999999999999999999999999988889999999999999999999999887545555667799
Q ss_pred cCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhC
Q 017125 244 LPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALA 323 (377)
Q Consensus 244 lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~ 323 (377)
+|||+.|.++.+||.++|++|+|+..+.+..+|++++.++|.+|++|.|+.|+.||||+||++.+|||.+||++|++.+.
T Consensus 239 lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~ 318 (372)
T KOG0676|consen 239 LPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALA 318 (372)
T ss_pred CCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125 324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 324 ~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 377 (377)
|...+++++.+|++.+++|+||||+|++..|+++||||+||+|+|+.++|||||
T Consensus 319 P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 319 PSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred CCCcceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 999999999999999999999999999999999999999999999999999998
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=7.9e-82 Score=598.69 Aligned_cols=376 Identities=80% Similarity=1.291 Sum_probs=350.3
Q ss_pred CCCCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCH
Q 017125 2 ADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNW 81 (377)
Q Consensus 2 ~~~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~ 81 (377)
|+-++.++||||+||+++|+||+|++.|++++||+++++++...+.+...+..++|+++....+...+++|+++|.+.||
T Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~ 80 (378)
T PTZ00004 1 MSVEETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNW 80 (378)
T ss_pred CCCCCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCH
Confidence 45678889999999999999999999999999999999887655444445678899998777677789999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCc
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 161 (377)
+.++.+|+|+|.+.|...+.++||++++|+++++..|+++++++||.++++++++.+++++++|++|.+||+|||+|++.
T Consensus 81 d~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~ 160 (378)
T PTZ00004 81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160 (378)
T ss_pred HHHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCc
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCC-cce
Q 017125 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSA-VEK 240 (377)
Q Consensus 162 t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~-~~~ 240 (377)
|+|+||+||+++.++..++++||++++++|.++|.+++..+....+.+.++++|+++|+|+.+++++.+....... ...
T Consensus 161 t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (378)
T PTZ00004 161 SHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEE 240 (378)
T ss_pred EEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHHhhhhcCccccce
Confidence 9999999999999999999999999999999999998888777777889999999999999999887764432222 367
Q ss_pred EEEcCCCcEEecCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHH
Q 017125 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEI 319 (377)
Q Consensus 241 ~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL 319 (377)
.|.+|||..+.++.+||.+||+||+|++++.+ ..+|+++|.++|.+||.|.|+.|++||||+||+|++|||.+||++||
T Consensus 241 ~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL 320 (378)
T PTZ00004 241 SYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKEL 320 (378)
T ss_pred EEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHH
Confidence 89999999999999999999999999998887 89999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125 320 TALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 320 ~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 377 (377)
++++|...++++..+++|.+++|+|||++|++.+|++.||||+||+|+|++++.||||
T Consensus 321 ~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 321 TTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred HHhCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 9999988889999999999999999999999999999999999999999999999997
No 6
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=8.4e-76 Score=564.27 Aligned_cols=370 Identities=41% Similarity=0.748 Sum_probs=333.3
Q ss_pred CCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCcc---ccCCCccceeccchhcccCcceeeccccCCccCCHHH
Q 017125 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM---VGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDD 83 (377)
Q Consensus 7 ~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~---~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~ 83 (377)
.++||||+||+++|+||+|++.|++++||++++++..... .+....++++|+++........+++|+++|.|.|||.
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd~ 83 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWDL 83 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHHH
Confidence 5689999999999999999999999999999988663211 1112336789999988877789999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhc----------CCceEE
Q 017125 84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS----------GRTTGI 153 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~----------g~~~~l 153 (377)
++.+|+|+|.+.|.++++++++++++|++++...|++++|++||.++++++++.+++++++|++ |.++|+
T Consensus 84 ~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tgl 163 (414)
T PTZ00280 84 MEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGT 163 (414)
T ss_pred HHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEE
Confidence 9999999988899999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhc
Q 017125 154 VLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAK 233 (377)
Q Consensus 154 VVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~ 233 (377)
|||+|++.|+|+||++|+++.++.+++++||++++++|.++|++++..+....+.+.++++|+++|++..++.++++...
T Consensus 164 VVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~ 243 (414)
T PTZ00280 164 VIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEFEKYD 243 (414)
T ss_pred EEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999888877666678999999999999999888776543
Q ss_pred cC-CCcceEEEcCCC---c--EEecCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCChhHHHHhhcCceeccCCc
Q 017125 234 IS-SAVEKSYELPDG---Q--VITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGST 306 (377)
Q Consensus 234 ~~-~~~~~~~~lpd~---~--~i~i~~~~~~~~E~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s 306 (377)
.. ......|.+||. . .+.++.+||.+||+||+|++++.+ ..+|+++|.++|++||+|.|+.|++||+|+||+|
T Consensus 244 ~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s 323 (414)
T PTZ00280 244 SDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGST 323 (414)
T ss_pred cCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcc
Confidence 21 223456888873 3 789999999999999999887654 4599999999999999999999999999999999
Q ss_pred CCcChHHHHHHHHHhhC----------------CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCc
Q 017125 307 MFPGIADRMSKEITALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPS 370 (377)
Q Consensus 307 ~i~g~~~rl~~eL~~~~----------------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~ 370 (377)
++|||.+||++||++++ |...+++|..++++.+++|+|||++|++++|+++||||+||+|+|++
T Consensus 324 ~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E~G~~ 403 (414)
T PTZ00280 324 MFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPS 403 (414)
T ss_pred cCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhccChH
Confidence 99999999999999986 34567899999999999999999999999999999999999999999
Q ss_pred cccccc
Q 017125 371 IVHRKC 376 (377)
Q Consensus 371 ~~~~k~ 376 (377)
+++|+.
T Consensus 404 i~~~~~ 409 (414)
T PTZ00280 404 ICRYNN 409 (414)
T ss_pred heeecc
Confidence 999873
No 7
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=3e-76 Score=566.80 Aligned_cols=368 Identities=51% Similarity=0.969 Sum_probs=324.0
Q ss_pred CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHH
Q 017125 4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDD 83 (377)
Q Consensus 4 ~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~ 83 (377)
+|+.++||||+||++||+||+|++.|++++|++++++..... ..++++|+++........+++|+++|.+.||+.
T Consensus 1 ~d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 75 (393)
T PF00022_consen 1 GDENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNS-----SNDYYVGDEALSPRSNLELRSPIENGVIVDWDA 75 (393)
T ss_dssp -TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSS-----SSSCEETHHHHHTGTGEEEEESEETTEESSHHH
T ss_pred CCCCCEEEEECCCceEEEEECCCCCCCCcCCCcccccccccc-----ceeEEeecccccchhheeeeeeccccccccccc
Confidence 478999999999999999999999999999999998876542 125778988666666678999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceE
Q 017125 84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 163 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 163 (377)
++.+|+++|.+.|..++++++|++++|+++++..|+.+++++||++++++++++++++||+|++|.++|||||+|++.|+
T Consensus 76 ~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~ 155 (393)
T PF00022_consen 76 LEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTS 155 (393)
T ss_dssp HHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EE
T ss_pred cccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeee
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCC-----------------CcChhHHHHHHHHHHhcceeccCHH
Q 017125 164 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYS-----------------FTTTAEREIVRDMKEKLAYIALDYE 226 (377)
Q Consensus 164 v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~-----------------~~~~~~~~~~~~ik~~~~~v~~~~~ 226 (377)
|+||+||+++.++.+++++||++++++|.++|.+++.. +....+...++++|+++|+++.+..
T Consensus 156 v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~ 235 (393)
T PF00022_consen 156 VVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPD 235 (393)
T ss_dssp EEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHH
T ss_pred eeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccc
Confidence 99999999999999999999999999999999987433 2233457889999999999999887
Q ss_pred HHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCCCCCC-------ChHHHHHHHHhcCChhHHHHhhcCc
Q 017125 227 QELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESA-------GIHETTYNSIMKCDVDIRKDLYGNI 299 (377)
Q Consensus 227 ~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~-------~l~~~I~~~i~~~~~~~~~~l~~nI 299 (377)
. .+...........|.+|||+.+.++.+|+.++|+||+|+..+.+.. +|+++|.++|.+||.+.|+.|++||
T Consensus 236 ~-~~~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nI 314 (393)
T PF00022_consen 236 E-EQEEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNI 314 (393)
T ss_dssp H-HHHHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTE
T ss_pred c-ccccccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccce
Confidence 5 1111222456788999999999999999999999999999887766 9999999999999999999999999
Q ss_pred eeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC-CCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125 300 VLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP-ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 300 vl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~-~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 377 (377)
|||||+|++|||.+||++||..+.+...++++..++ +|.+++|+|||++|++.+|+++||||+||+|+|+++++||||
T Consensus 315 vl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eYeE~G~~~i~rkc~ 393 (393)
T PF00022_consen 315 VLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEYEEYGPSIIHRKCF 393 (393)
T ss_dssp EEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHHHHHGGGGHHHHT-
T ss_pred EEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHHhCcCcceeeecCC
Confidence 999999999999999999999999888899999998 999999999999999999999999999999999999999998
No 8
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=6.2e-75 Score=553.36 Aligned_cols=369 Identities=68% Similarity=1.181 Sum_probs=340.5
Q ss_pred CCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHHHHH
Q 017125 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKI 87 (377)
Q Consensus 8 ~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~~~ 87 (377)
++||||+||++||+||++++.|++++||+++++++.....+ ....+++|+++....+...+++|+++|.+.||+.++.+
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~-~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~i 80 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVG-DAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEKI 80 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccC-CCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHHH
Confidence 58999999999999999999999999999999876532111 23467899998776666689999999999999999999
Q ss_pred HHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceEEEEe
Q 017125 88 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 167 (377)
Q Consensus 88 ~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~~v 167 (377)
|+++|.+.|+..++++++++++|..++...|+.+++++||.++++++++++++++++|++|.++|+|||+|++.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv 160 (373)
T smart00268 81 WDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPV 160 (373)
T ss_pred HHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEE
Confidence 99999778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhcc---CCCcceEEEc
Q 017125 168 YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKI---SSAVEKSYEL 244 (377)
Q Consensus 168 ~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~---~~~~~~~~~l 244 (377)
+||.++.++.+++++||++++++|.++|++++..+....+.+.++++|+++|+++.+++++++.... .......|.+
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l 240 (373)
T smart00268 161 VDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYEL 240 (373)
T ss_pred ECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEEC
Confidence 9999999999999999999999999999886666665667789999999999999998877765432 2445678999
Q ss_pred CCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCC
Q 017125 245 PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAP 324 (377)
Q Consensus 245 pd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~ 324 (377)
|||..+.++.+|+.++|.||+|+..+.+..+|+++|.++|.+||.+.|+.+++||+||||+|++|||.+||++||+.+.|
T Consensus 241 pdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p 320 (373)
T smart00268 241 PDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAP 320 (373)
T ss_pred CCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125 325 SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 325 ~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 377 (377)
...++++..+++|.+++|.|||++|++++|++.||||+||+|+|+++++||||
T Consensus 321 ~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 321 KKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred CCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 88889999999999999999999999999999999999999999999999998
No 9
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=100.00 E-value=2.2e-74 Score=512.00 Aligned_cols=369 Identities=40% Similarity=0.750 Sum_probs=319.3
Q ss_pred CCCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcc-cCcceeeccccCCccCCH
Q 017125 3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK-RGILTLKYPIEHGIVNNW 81 (377)
Q Consensus 3 ~~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~-~~~~~~~~p~~~g~i~d~ 81 (377)
-+++..+||||+||+++|+||+|++.|++++|+.++...+...-. .+.+.++++.++... +....++.|+++|.+.||
T Consensus 7 ggdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d~-~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dW 85 (426)
T KOG0679|consen 7 GGDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGDA-EDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDW 85 (426)
T ss_pred cccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCcc-ccccceEeechhccCCCCCCeeccchhcCCcccH
Confidence 368899999999999999999999999999999998643222111 112336788777654 566789999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCc
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 161 (377)
|.++.+|+|.|..+|..+|.++|+++++|+.+++..|++++|.+||++++|+++++..++|++|++|+.|+||||||+++
T Consensus 86 D~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~ 165 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATH 165 (426)
T ss_pred HHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCC
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhH---------------------------------H
Q 017125 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAE---------------------------------R 208 (377)
Q Consensus 162 t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~---------------------------------~ 208 (377)
|+|+||+||+++.+++++.++||+.|+..++++|...+.++.+... .
T Consensus 166 ~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~ 245 (426)
T KOG0679|consen 166 TSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQ 245 (426)
T ss_pred ceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988776542110 1
Q ss_pred HHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCC------------CCCCCh
Q 017125 209 EIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIG------------MESAGI 276 (377)
Q Consensus 209 ~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~------------~~~~~l 276 (377)
..++++|++++.++..+-.+. ...+-.++.|++|||.....+.+||++||.||.|+... ....|+
T Consensus 246 ~v~~e~ke~v~qv~dtp~de~---~~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~~~~~~~n~~lG~ 322 (426)
T KOG0679|consen 246 RVYQEFKESVLQVSDTPFDEE---VAAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEAGATSHINTMLGL 322 (426)
T ss_pred HHHHHHHHHHHhccCCCCccc---ccccCCCccccCCCCcccccCcceeecchhhcCcchhccccccccCCCCCccccCc
Confidence 235555655555542211111 11123578999999999999999999999999998742 235689
Q ss_pred HHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC---CCccccchhhhhhhcccc
Q 017125 277 HETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLST 353 (377)
Q Consensus 277 ~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~---~~~~~~w~Gasi~a~l~~ 353 (377)
++++..+|..||+|+|..|+.|||+|||+|.|+||.+||++||+.++|.+ ++++++.. ++.+++|+||||+|+|++
T Consensus 323 ~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~WlGGSILASLgt 401 (426)
T KOG0679|consen 323 PHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQSWLGGSILASLGT 401 (426)
T ss_pred hHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhhhhhhHHHhcccc
Confidence 99999999999999999999999999999999999999999999999997 99998864 799999999999999999
Q ss_pred cccccccHHHHhhcCC-ccccccc
Q 017125 354 FQQMWIAKAEYDESGP-SIVHRKC 376 (377)
Q Consensus 354 ~~~~~itr~ey~e~G~-~~~~~k~ 376 (377)
|+++||+|+||+|.|. .-+.|||
T Consensus 402 Fqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 402 FQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred HHHHhhhHHHHHHhhhHHHHhhcC
Confidence 9999999999999999 8899998
No 10
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=3.4e-72 Score=533.95 Aligned_cols=367 Identities=71% Similarity=1.200 Sum_probs=336.3
Q ss_pred CEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCc-ceeeccccCCccCCHHHHHHH
Q 017125 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVNNWDDMEKI 87 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~p~~~g~i~d~~~~~~~ 87 (377)
+||||+||+++|+||++++.|++++||+++++++.....+.+....++|+++...... ..+++|+++|.+.||+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 6899999999999999999999999999999876543333345678899998776553 789999999999999999999
Q ss_pred HHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceEEEEe
Q 017125 88 WHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 167 (377)
Q Consensus 88 ~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~~v 167 (377)
|+++|.+.|..+++++++++++|+++++..|+.+++++||.++++++++++++++|+|++|.++|+|||+|++.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv 160 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPV 160 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEE
Confidence 99999888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHH-hccCCCcceEEEcCC
Q 017125 168 YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET-AKISSAVEKSYELPD 246 (377)
Q Consensus 168 ~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~-~~~~~~~~~~~~lpd 246 (377)
+||+++.++..++++||+++++++.++|++++..+....+...++++|+++|+++.++.++.+. ..........|.+||
T Consensus 161 ~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd 240 (371)
T cd00012 161 YDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPD 240 (371)
T ss_pred ECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCC
Confidence 9999999999999999999999999999988876666667889999999999999988776532 223344567899999
Q ss_pred CcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCC-
Q 017125 247 GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS- 325 (377)
Q Consensus 247 ~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~- 325 (377)
++.+.++.+|+.++|+||+|+..+....+|+++|.++|+.||.+.|+.+++||+||||+|++|||.+||++||..+.|.
T Consensus 241 ~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~ 320 (371)
T cd00012 241 GRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPS 320 (371)
T ss_pred CeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcc
Confidence 9999999999999999999998888889999999999999999999999999999999999999999999999999987
Q ss_pred -CceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccc
Q 017125 326 -SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRK 375 (377)
Q Consensus 326 -~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k 375 (377)
...+++...++|.+++|.|||++|++.+|+++||||+||+|+|+++++||
T Consensus 321 ~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 321 KDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred cceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 56678888889999999999999999999999999999999999999987
No 11
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=100.00 E-value=1.2e-72 Score=476.60 Aligned_cols=371 Identities=50% Similarity=0.908 Sum_probs=345.9
Q ss_pred CCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCC--ccccCCCccceeccchhcccCcceeeccccCCccCCHH
Q 017125 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG--VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWD 82 (377)
Q Consensus 5 ~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~--~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~ 82 (377)
++.++||.|.|+.+.|+||+|++-|.+++|+.+++|--.. ......-++..||+++...++..++.||+++|.+.||+
T Consensus 2 d~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwd 81 (389)
T KOG0677|consen 2 DSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWD 81 (389)
T ss_pred CCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChH
Confidence 5689999999999999999999999999999999985332 11122347889999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCce
Q 017125 83 DMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 162 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t 162 (377)
+++++|+|.|.++|.++|.+.++++++||++|.+.|++++++.||+++|.++++.-++++++|+.|..+|+|||.|.+.|
T Consensus 82 dM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVT 161 (389)
T KOG0677|consen 82 DMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVT 161 (389)
T ss_pred HHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEE
Q 017125 163 HTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242 (377)
Q Consensus 163 ~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
+|+||++|..+++-..+++++|+++++||.++|.++|+.+...++.+.++++|+++||++.|.+.+.+....+.-.-..|
T Consensus 162 Hi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~Y 241 (389)
T KOG0677|consen 162 HIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESY 241 (389)
T ss_pred EEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999988877777777788899
Q ss_pred EcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhh
Q 017125 243 ELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITAL 322 (377)
Q Consensus 243 ~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~ 322 (377)
.+|||..|.++.|||.+||.||+|.+++.+.+++.+++.++|+..++|.|..+.++|||.||++..||+..||++||+++
T Consensus 242 tLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkql 321 (389)
T KOG0677|consen 242 TLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQL 321 (389)
T ss_pred ecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred CC-----------CCceEEEECCCCCccccchhhhhhhcc-cccccccccHHHHhhcCCcccccc
Q 017125 323 AP-----------SSMKIKVVAPPERKYSVWIGGSILASL-STFQQMWIAKAEYDESGPSIVHRK 375 (377)
Q Consensus 323 ~~-----------~~~~v~v~~~~~~~~~~w~Gasi~a~l-~~~~~~~itr~ey~e~G~~~~~~k 375 (377)
.- ..+++++-.||-+..-+|+||+.+|.+ ..-+++|+||+||.|.|++.+.+.
T Consensus 322 yl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 322 YLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred HHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 42 235688888999999999999999996 567899999999999999988764
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=1.3e-68 Score=507.52 Aligned_cols=374 Identities=55% Similarity=0.997 Sum_probs=340.7
Q ss_pred CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeC-CCCccccCCCccceeccchhcccC--cceeeccccCCccCC
Q 017125 4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPR-HTGVMVGMGQKDAYVGDEAQSKRG--ILTLKYPIEHGIVNN 80 (377)
Q Consensus 4 ~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~-~~~~~~~~~~~~~~vg~~~~~~~~--~~~~~~p~~~g~i~d 80 (377)
.+..++||||+||+++|+||+|++.|++++|+++++.+ +..++....+++.++|+++....+ ...+++|+++|.+.|
T Consensus 3 ~~~~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~ 82 (444)
T COG5277 3 GDNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILN 82 (444)
T ss_pred CCCCCeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCC
Confidence 34455599999999999999999999999999999886 444555556788899999988765 678999999999999
Q ss_pred HHHHHHHHHHhccc--ccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCc--eEEEEe
Q 017125 81 WDDMEKIWHHTFYN--ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--TGIVLD 156 (377)
Q Consensus 81 ~~~~~~~~~~~~~~--~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~--~~lVVD 156 (377)
|++++++|+++|.+ .+...+.++|+++++|++++...|+++++++||.++++++++..++++++|+.|.. +|||||
T Consensus 83 W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD 162 (444)
T COG5277 83 WDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVID 162 (444)
T ss_pred cHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEE
Confidence 99999999999988 68888999999999999999999999999999999999999999999999999999 999999
Q ss_pred CCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHH-----cCCCCcCh---hHHHHHHHHHHhcc-------ee
Q 017125 157 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTT---AEREIVRDMKEKLA-------YI 221 (377)
Q Consensus 157 iG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~---~~~~~~~~ik~~~~-------~v 221 (377)
+|++.|+|+||+||.++.++.+++++||++++.+|..+|.. +++.+... .+.+.++.+|+++| |+
T Consensus 163 ~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~ 242 (444)
T COG5277 163 SGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYV 242 (444)
T ss_pred cCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccch
Confidence 99999999999999999999999999999999999999998 66666665 56889999999999 88
Q ss_pred ccCHHHHHHHhcc----------------CCCcceEEEcCCCcEEecCCc-cccccccCCCCc--cCCCCCCC-------
Q 017125 222 ALDYEQELETAKI----------------SSAVEKSYELPDGQVITIGAE-RFRCPEVLFQPS--MIGMESAG------- 275 (377)
Q Consensus 222 ~~~~~~~~~~~~~----------------~~~~~~~~~lpd~~~i~i~~~-~~~~~E~lf~p~--~~~~~~~~------- 275 (377)
..+.++..+.... .......+..|+++.+.+..+ ||++||.+|.|. ..+.+.++
T Consensus 243 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~ 322 (444)
T COG5277 243 SLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQ 322 (444)
T ss_pred hhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhh
Confidence 8777665544332 233456789999999999998 999999999999 65555555
Q ss_pred --------------------hHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC
Q 017125 276 --------------------IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 335 (377)
Q Consensus 276 --------------------l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~ 335 (377)
|++++.++|..++.+.|+.|++|||||||+|++|||.+||++||..+.|....+++..++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~ 402 (444)
T COG5277 323 ELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPP 402 (444)
T ss_pred hhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCC
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125 336 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 336 ~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 377 (377)
+|.+.+|+|||++|++..|.+.||||+||+|+|+++++++||
T Consensus 403 ~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 403 DPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred chhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 999999999999999999999999999999999999999987
No 13
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=100.00 E-value=4.4e-67 Score=454.81 Aligned_cols=362 Identities=30% Similarity=0.570 Sum_probs=328.0
Q ss_pred CCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhccc--CcceeeccccCCccCCHHH
Q 017125 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR--GILTLKYPIEHGIVNNWDD 83 (377)
Q Consensus 6 ~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~--~~~~~~~p~~~g~i~d~~~ 83 (377)
+..|||+|+|++++|+|++++..|. .+||++.+.++. .+..++|++..+.+ +...+++|+++|.+++|+.
T Consensus 2 ~~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~-------~rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~t 73 (400)
T KOG0680|consen 2 ETTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFG-------RRRSFLANEIDECKDISSLFYRRPHERGYLVNWDT 73 (400)
T ss_pred CCceEEEcCCceeEEeccCCCCCce-eccchhhhcccc-------cchhhhhhhhhhccCccceEEeehhhcceeEeehh
Confidence 5679999999999999999999998 669999887654 34578898877764 3466799999999999999
Q ss_pred HHHHHHHhcccc-cccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhc---C--------Cce
Q 017125 84 MEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS---G--------RTT 151 (377)
Q Consensus 84 ~~~~~~~~~~~~-L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~---g--------~~~ 151 (377)
..++|+++|.+. .+++.+++.+++++|.++-++..+...+++||+|+|.+++-.+.+.++++-. + ...
T Consensus 74 q~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c 153 (400)
T KOG0680|consen 74 QSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSEC 153 (400)
T ss_pred HHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccce
Confidence 999999999653 4566789999999999999999999999999999999999999999888762 1 237
Q ss_pred EEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHH
Q 017125 152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELET 231 (377)
Q Consensus 152 ~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~ 231 (377)
++|||.|++.|+|+|+++|.+..++++++++||+.+|++|++.+..++.++.+ +...++++|++.|||++|+.+.++.
T Consensus 154 ~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~lNvmd--ET~vVNeiKEdvcfVSqnF~~~m~~ 231 (400)
T KOG0680|consen 154 CLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHLNVMD--ETYVVNEIKEDVCFVSQNFKEDMDI 231 (400)
T ss_pred EEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhhcccc--hhhhhhhhhhheEEechhhHHHHHH
Confidence 99999999999999999999999999999999999999999999998888765 6788999999999999999999887
Q ss_pred hccC---CCcceEEEcCC-------------------CcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCCh
Q 017125 232 AKIS---SAVEKSYELPD-------------------GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDV 289 (377)
Q Consensus 232 ~~~~---~~~~~~~~lpd-------------------~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~ 289 (377)
+... +.....|.+|| .+.|.+..|||.+||+||+|++++..+.||+|+|.++|..||.
T Consensus 232 ~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe 311 (400)
T KOG0680|consen 232 AKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPE 311 (400)
T ss_pred HhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHH
Confidence 6543 23455677776 4678889999999999999999999999999999999999999
Q ss_pred hHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCC
Q 017125 290 DIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369 (377)
Q Consensus 290 ~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~ 369 (377)
++|+.|+.|||++||++++|||.+||..||++++|.++.++|..+.||..-+|-||+.+|.+++|...||||+||+|+|+
T Consensus 312 ~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G~ 391 (400)
T KOG0680|consen 312 EVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHGP 391 (400)
T ss_pred HHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccC
Q 017125 370 SIVHRKCF 377 (377)
Q Consensus 370 ~~~~~k~~ 377 (377)
+++.+|.|
T Consensus 392 ~~~~~~~~ 399 (400)
T KOG0680|consen 392 SWCTKKRF 399 (400)
T ss_pred hhhhhhcc
Confidence 99999876
No 14
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=100.00 E-value=1.9e-55 Score=405.42 Aligned_cols=365 Identities=28% Similarity=0.578 Sum_probs=314.9
Q ss_pred CCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCc-ceeeccccCCccCCHHHH
Q 017125 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI-LTLKYPIEHGIVNNWDDM 84 (377)
Q Consensus 6 ~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~-~~~~~p~~~g~i~d~~~~ 84 (377)
...|||||+||+.+|+||+|+..|+++|+|++.++++... +..-.+||++....... ...++||++.++++|+.+
T Consensus 22 n~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~----~~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~ 97 (645)
T KOG0681|consen 22 NTIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKL----GASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELM 97 (645)
T ss_pred CCCcEEEeCCceeEeecccCCCCccchhhhhhcccccccc----ccccccccchhhhhhhhhccCCCCCcCCccccHHHH
Confidence 3679999999999999999999999999999999986643 12234688776654332 356899999999999999
Q ss_pred HHHHHHhcccccccCCC--CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhh-hcCC---ceEEEEeCC
Q 017125 85 EKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY-ASGR---TTGIVLDSG 158 (377)
Q Consensus 85 ~~~~~~~~~~~L~~~~~--~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~-~~g~---~~~lVVDiG 158 (377)
|++++|+| .+|+.+.+ +||+++||+..+|...|..+.++|||.||+|+|.+--+++.+.| .++. .+|+||++|
T Consensus 98 E~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g 176 (645)
T KOG0681|consen 98 EQILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMG 176 (645)
T ss_pred HHHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecC
Confidence 99999998 89999874 79999999999999999999999999999999999999999998 3333 369999999
Q ss_pred CCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccC---
Q 017125 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKIS--- 235 (377)
Q Consensus 159 ~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~--- 235 (377)
++.|.|.||.||..+....+++++||++...||.++++.++..+........++.++..+|+++.||.+++......
T Consensus 177 ~~~T~vipvldG~~il~~~kRiN~GG~qa~dYL~~Lmq~Kyp~~~~~~t~sk~E~l~~eHcyis~DY~eei~~~l~~d~~ 256 (645)
T KOG0681|consen 177 HSATHVIPVLDGRLILKDVKRINWGGYQAGDYLSRLMQLKYPFHLNAFTGSKAERLLHEHCYISPDYREEIIKILEMDYY 256 (645)
T ss_pred CCcceeEEEecCchhhhcceeeccCcchHHHHHHHHHhccCccchhhcCHHHHHHHhhhhceeCcchHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999887776666677789999999999998877643321100
Q ss_pred ----------------------------------------------------------------------CCcceEEE--
Q 017125 236 ----------------------------------------------------------------------SAVEKSYE-- 243 (377)
Q Consensus 236 ----------------------------------------------------------------------~~~~~~~~-- 243 (377)
.+....|.
T Consensus 257 d~~~~~~qlP~~evl~~~e~~l~Ae~kqekRlq~~a~lkrv~k~~~re~~redeqql~~~~kaq~e~e~~~D~~q~~~ll 336 (645)
T KOG0681|consen 257 DENRNYFQLPYTEVLAEVELALTAEKKQEKRLQEQAALKRVEKINARENRREDEQQLESYNKAQGEQESNLDLEQKFPLL 336 (645)
T ss_pred hccceEEecccccccchhhhhccHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHhhhchhcCccHhhhchhh
Confidence 00000000
Q ss_pred -cCC----------------------------------------------------------------------------
Q 017125 244 -LPD---------------------------------------------------------------------------- 246 (377)
Q Consensus 244 -lpd---------------------------------------------------------------------------- 246 (377)
+|+
T Consensus 337 ~v~~eL~~d~lk~k~~qr~lkas~dar~rar~eke~Er~~k~~~~r~~~~~swl~e~r~k~~~ller~~~kk~lk~e~~~ 416 (645)
T KOG0681|consen 337 NVPAELDEDQLKEKKKQRILKASTDARLRARVEKELERLNKLEEEREENLISWLEELREKLEKLLERISQKKRLKQELKD 416 (645)
T ss_pred cchhhhCHHHHHHHHHHHHHHhhhhhhccccccchHHHhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 000
Q ss_pred --------------------------------------------------------------------------------
Q 017125 247 -------------------------------------------------------------------------------- 246 (377)
Q Consensus 247 -------------------------------------------------------------------------------- 246 (377)
T Consensus 417 r~s~~Sq~rmr~~~~La~~~~~rrk~~~~t~D~fg~~Dedw~vYe~lee~~~~~~~dl~~l~~~L~e~Dp~F~~~~~~~~ 496 (645)
T KOG0681|consen 417 RKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKSILEDLKSLNHELLEFDPHFTQYVEGTT 496 (645)
T ss_pred hhhhhhHhhhHHHHhhhHHHHHHHhcccCCccccccchhhHHHHHHhhhhhhhHHHHHHHHHHHHHhhCccccccccccc
Confidence
Q ss_pred -------------CcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHH
Q 017125 247 -------------GQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIAD 313 (377)
Q Consensus 247 -------------~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~ 313 (377)
...+.++.+++++||++|+|+++|.+++||.|++..++++.|.+.+..+++||+||||+|++||+++
T Consensus 497 d~~~~~~p~~~~e~~qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmke 576 (645)
T KOG0681|consen 497 DPRNGVLPGFTAEDYQLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKE 576 (645)
T ss_pred CcccCcchhHHHhhhhhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHH
Confidence 0144567799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccc
Q 017125 314 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRK 375 (377)
Q Consensus 314 rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k 375 (377)
||.+||.++.|..+.+.|+.+.||.++||.||+.+|...+|...++||+||+|+|++.++.-
T Consensus 577 Ri~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh 638 (645)
T KOG0681|consen 577 RIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEH 638 (645)
T ss_pred HHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887653
No 15
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=100.00 E-value=1.7e-52 Score=364.48 Aligned_cols=368 Identities=39% Similarity=0.678 Sum_probs=313.1
Q ss_pred CCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCc--------cccCCCccceeccchhcccCcceeeccccCCc
Q 017125 6 DIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI 77 (377)
Q Consensus 6 ~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~--------~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~ 77 (377)
.+.++|+|+|+.++|.||+|+..|++++|++++......+ .-+..+.++++|++++. .+.+.+.+|+++|.
T Consensus 3 ~~~p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~~ysl~ypiRhg~ 81 (415)
T KOG0678|consen 3 GNLPCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-ATTYSLKYPIRHGQ 81 (415)
T ss_pred CCCceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hcccccccceeccc
Confidence 3456999999999999999999999999999876432211 11234567899999988 55788999999999
Q ss_pred cCCHHHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcC--------C
Q 017125 78 VNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG--------R 149 (377)
Q Consensus 78 i~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g--------~ 149 (377)
+.||+.++++|...+.++|...|++|..++++|+.++.++|+.+.++.||.++++.+++.-++++|+-+.- .
T Consensus 82 ve~wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ 161 (415)
T KOG0678|consen 82 VEDWDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERF 161 (415)
T ss_pred cccHHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhhe
Confidence 99999999999999989999999999999999999999999999999999999999999999998876542 2
Q ss_pred ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHH
Q 017125 150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQEL 229 (377)
Q Consensus 150 ~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~ 229 (377)
-+|+|+|.|.+.|.|.||.+|+++-++.+.+|+.|++++..+.++|++++...+.....+.++.+|+++||+.+|.-.+.
T Consensus 162 ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivkef 241 (415)
T KOG0678|consen 162 LTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKEF 241 (415)
T ss_pred eeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHHH
Confidence 48999999999999999999999999999999999999999999999998888887788999999999999999988776
Q ss_pred HHhccCCCc-ceEE---EcCC--CcEEecCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCChhHHHHhhcCceec
Q 017125 230 ETAKISSAV-EKSY---ELPD--GQVITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCDVDIRKDLYGNIVLS 302 (377)
Q Consensus 230 ~~~~~~~~~-~~~~---~lpd--~~~i~i~~~~~~~~E~lf~p~~~~~~-~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~ 302 (377)
.+....... -+.| .+-. ...++++.+||..||++|.|+....+ ...+++.+...|+.||+|.|+.|++||++.
T Consensus 242 ~k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivls 321 (415)
T KOG0678|consen 242 AKYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVLS 321 (415)
T ss_pred HHhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhhc
Confidence 654432110 0111 1111 23466788999999999999986544 457999999999999999999999999999
Q ss_pred cCCcCCcChHHHHHHHHHhhCC--------------CCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcC
Q 017125 303 GGSTMFPGIADRMSKEITALAP--------------SSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESG 368 (377)
Q Consensus 303 GG~s~i~g~~~rl~~eL~~~~~--------------~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G 368 (377)
||.+..++|..|++.++..+.. ....+.+....-..+++|.|++++|+...|-..+=||++|+|+|
T Consensus 322 ggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~g 401 (415)
T KOG0678|consen 322 GGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEYG 401 (415)
T ss_pred cchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccccCcchhhhhhC
Confidence 9999999999999988865431 12235666655667999999999999999999999999999999
Q ss_pred Cccccc
Q 017125 369 PSIVHR 374 (377)
Q Consensus 369 ~~~~~~ 374 (377)
++|++.
T Consensus 402 ~si~r~ 407 (415)
T KOG0678|consen 402 PSICRT 407 (415)
T ss_pred hhhhhc
Confidence 999875
No 16
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-38 Score=291.84 Aligned_cols=312 Identities=20% Similarity=0.391 Sum_probs=239.1
Q ss_pred cceeeccccCCccCC----------HHHHHHHHHHhcccccccCCC---CCcEEEeeCCCCCHHhHHHHHhhhcccCCCC
Q 017125 66 ILTLKYPIEHGIVNN----------WDDMEKIWHHTFYNELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 66 ~~~~~~p~~~g~i~d----------~~~~~~~~~~~~~~~L~~~~~---~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
.+.+++|+++|.+.- .+++.++|+|++.+.|.+.++ .+.+|+++|....+...+.++.++|-+++|.
T Consensus 178 ~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~ 257 (618)
T KOG0797|consen 178 PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFN 257 (618)
T ss_pred cceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccc
Confidence 467899999997632 367899999999899999864 6889999999999999999999999999999
Q ss_pred eEEEechhhhhhhhcCCceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCC-----cChhH
Q 017125 133 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSF-----TTTAE 207 (377)
Q Consensus 133 ~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~-----~~~~~ 207 (377)
++.++.+++|++|+.|.+++||||||+..|+|+||.||..+.++...+++||.+|++.|..+|++.+..+ .+..+
T Consensus 258 ~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d 337 (618)
T KOG0797|consen 258 SAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPID 337 (618)
T ss_pred eEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999877654 34567
Q ss_pred HHHHHHHHHhcceeccCHHH-HHHHh--ccCCC----------------------------------cceEEEcCCCc--
Q 017125 208 REIVRDMKEKLAYIALDYEQ-ELETA--KISSA----------------------------------VEKSYELPDGQ-- 248 (377)
Q Consensus 208 ~~~~~~ik~~~~~v~~~~~~-~~~~~--~~~~~----------------------------------~~~~~~lpd~~-- 248 (377)
+.+++++|+++|......-. ....+ ..+.. ....|..||.+
T Consensus 338 ~lLl~~LKe~Fc~l~~a~~~vQ~~~F~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~ 417 (618)
T KOG0797|consen 338 WLLLNQLKEKFCHLRAAELGVQLTVFSYREPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDL 417 (618)
T ss_pred HHHHHHHHHHhccccHhhhhhhhhhhhccCCCCcceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccc
Confidence 88999999999977532111 00000 00000 00112222210
Q ss_pred ---------------------EEecC-------CccccccccCCCCccC-----------------------------CC
Q 017125 249 ---------------------VITIG-------AERFRCPEVLFQPSMI-----------------------------GM 271 (377)
Q Consensus 249 ---------------------~i~i~-------~~~~~~~E~lf~p~~~-----------------------------~~ 271 (377)
..+++ ..|-..+|..-.+++. -.
T Consensus 418 fd~e~~~~~~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~ 497 (618)
T KOG0797|consen 418 FDYEYLLEDTWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYE 497 (618)
T ss_pred cchhhhhhhcccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhcccceec
Confidence 00110 0111111111111100 00
Q ss_pred C----CCChHHHHHHHHhcC-ChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCC----ceEEEECCC---CCcc
Q 017125 272 E----SAGIHETTYNSIMKC-DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSS----MKIKVVAPP---ERKY 339 (377)
Q Consensus 272 ~----~~~l~~~I~~~i~~~-~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~----~~v~v~~~~---~~~~ 339 (377)
. ...+.+.|..+|..+ ..+.+++|.+.|.++||+...||+.+.|++.+....|.. ..|.|..+| ||++
T Consensus 498 ~f~gl~l~ldqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~ 577 (618)
T KOG0797|consen 498 SFYGLLLALDQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQF 577 (618)
T ss_pred cccchhhccchhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchh
Confidence 0 124556688888877 567899999999999999999999999999998766652 247777765 8999
Q ss_pred ccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125 340 SVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 340 ~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 377 (377)
-+|+||+|||.++.-.+.||++.||.-+|.++++.||.
T Consensus 578 VaWKGaaIla~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 578 VAWKGAAILAILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred eEecchhhhhHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 99999999999998899999999999999999999874
No 17
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.3e-37 Score=292.57 Aligned_cols=307 Identities=18% Similarity=0.246 Sum_probs=235.7
Q ss_pred CEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhccc----CcceeeccccCCccCCHHHH
Q 017125 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVNNWDDM 84 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~~ 84 (377)
.++||+||+++|+|+.++. +.+..||+++..+.. ++..++|+++.+.. ....+.+|+++|.+.||+..
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~-------~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~ 81 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT-------GKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEAT 81 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC-------CeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHH
Confidence 3999999999999998765 456689999876431 23468999987652 34678999999999999999
Q ss_pred HHHHHHhcccccccC-CCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCC
Q 017125 85 EKIWHHTFYNELRVA-PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSG 158 (377)
Q Consensus 85 ~~~~~~~~~~~L~~~-~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG 158 (377)
+.+|++++.+.+... ....++++++|..++...|+.+.+ +||.+|++.++++++|+||++++|. .+++|||+|
T Consensus 82 e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG 160 (335)
T PRK13930 82 EAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIG 160 (335)
T ss_pred HHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeC
Confidence 999999994444432 336789999999999998887777 6799999999999999999999987 578999999
Q ss_pred CCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHc-CCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCC
Q 017125 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER-GYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSA 237 (377)
Q Consensus 159 ~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~-~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~ 237 (377)
+++|+++++.+|.++ .....++||.++++++.+++.++ +... ..+.++++|+++|++..+.+.. .... ..
T Consensus 161 ~gttdvs~v~~g~~~--~~~~~~lGG~~id~~l~~~l~~~~~~~~----~~~~ae~~K~~~~~~~~~~~~~--~~~~-~~ 231 (335)
T PRK13930 161 GGTTEVAVISLGGIV--YSESIRVAGDEMDEAIVQYVRRKYNLLI----GERTAEEIKIEIGSAYPLDEEE--SMEV-RG 231 (335)
T ss_pred CCeEEEEEEEeCCEE--eecCcCchhHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHhhcCcCCCCCc--eEEE-EC
Confidence 999999999999887 45678999999999999998754 2222 2367999999999886553211 0000 00
Q ss_pred cceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcC-ceeccCCcCCcChHHHHH
Q 017125 238 VEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADRMS 316 (377)
Q Consensus 238 ~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~n-Ivl~GG~s~i~g~~~rl~ 316 (377)
....+.+|+ .+.++.+++ .|++|.+ ..++.+.|.++|.+++.+.+..+++| |+||||+|++|||.+||+
T Consensus 232 ~~~~~~~~~--~~~i~~~~~--~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~ 301 (335)
T PRK13930 232 RDLVTGLPK--TIEISSEEV--REALAEP------LQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLS 301 (335)
T ss_pred ccCCCCCCe--eEEECHHHH--HHHHHHH------HHHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHH
Confidence 000111222 334444444 4777765 23588899999999999989899987 999999999999999999
Q ss_pred HHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+++. +++....+|..++-.||++++.-
T Consensus 302 ~~~~--------~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 302 EETG--------LPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHC--------CCceecCCHHHHHHHHHHHHHhC
Confidence 9984 12333456788899999998754
No 18
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=4.8e-36 Score=281.65 Aligned_cols=305 Identities=18% Similarity=0.242 Sum_probs=229.0
Q ss_pred CEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhccc----CcceeeccccCCccCCHHHH
Q 017125 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVNNWDDM 84 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~~ 84 (377)
.|+||+||+++|+|+++++. .+.+||+++.+++. ...+++|+++.... ....+.+|+++|.+.||+..
T Consensus 7 ~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~-------~~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~~ 78 (334)
T PRK13927 7 DLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDT-------KKVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDVT 78 (334)
T ss_pred eeEEEcCcceEEEEECCCcE-EEecCCEEEEECCC-------CeEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHHH
Confidence 59999999999999998876 56899999987552 12468999987652 44678899999999999999
Q ss_pred HHHHHHhcccccccCCCCC-cEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCC
Q 017125 85 EKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSG 158 (377)
Q Consensus 85 ~~~~~~~~~~~L~~~~~~~-~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG 158 (377)
+.+|++++.+.+.. +..+ .+++++|..++... ++.++.+|+.+|++.+.++++|+||++++|. ++++|||+|
T Consensus 79 ~~ll~~~~~~~~~~-~~~~~~~vi~vP~~~~~~~-r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiG 156 (334)
T PRK13927 79 EKMLKYFIKKVHKN-FRPSPRVVICVPSGITEVE-RRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIG 156 (334)
T ss_pred HHHHHHHHHHHhhc-cCCCCcEEEEeCCCCCHHH-HHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeC
Confidence 99999999776666 5545 57777776555544 4567788899999999999999999999986 467999999
Q ss_pred CCceEEEEe-eCceecccceEEecccHHHHHHHHHHHHHHc-CCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCC
Q 017125 159 DGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTER-GYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISS 236 (377)
Q Consensus 159 ~~~t~v~~v-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~-~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~ 236 (377)
+++|+++++ .+|....+ ..++||+++|++|.+++.++ +... +.+.++++|+++|++..+.+.. .... .
T Consensus 157 ggttdvs~v~~~~~~~~~---~~~lGG~~id~~l~~~l~~~~~~~~----~~~~ae~iK~~~~~~~~~~~~~--~~~~-~ 226 (334)
T PRK13927 157 GGTTEVAVISLGGIVYSK---SVRVGGDKFDEAIINYVRRNYNLLI----GERTAERIKIEIGSAYPGDEVL--EMEV-R 226 (334)
T ss_pred CCeEEEEEEecCCeEeeC---CcCChHHHHHHHHHHHHHHHhCcCc----CHHHHHHHHHHhhccCCCCCCc--eEEE-e
Confidence 999999999 66655433 35899999999999998643 2222 3457999999999875432100 0000 0
Q ss_pred CcceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChHHHH
Q 017125 237 AVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRM 315 (377)
Q Consensus 237 ~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~g~~~rl 315 (377)
.....+.+|+ .+.++.+++ .|++|.| ..++.+.|.++|.+++.+.++.+++ +|+||||+|++||+.+||
T Consensus 227 ~~~~~~~~~~--~~~i~~~~~--~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l 296 (334)
T PRK13927 227 GRDLVTGLPK--TITISSNEI--REALQEP------LSAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLL 296 (334)
T ss_pred CcccCCCCCe--EEEECHHHH--HHHHHHH------HHHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHH
Confidence 0000011121 344554544 3677665 2358899999999999888888887 599999999999999999
Q ss_pred HHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 316 SKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 316 ~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++++. +++....+|..++-.||++++.-
T Consensus 297 ~~~~~--------~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 297 SEETG--------LPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHC--------CCcEecCCHHHHHHHHHHHHHhh
Confidence 99983 22334456789999999998754
No 19
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=2.7e-35 Score=276.12 Aligned_cols=311 Identities=16% Similarity=0.208 Sum_probs=232.3
Q ss_pred EEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcc----cCcceeeccccCCccCCHHHHH
Q 017125 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVNNWDDME 85 (377)
Q Consensus 10 viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~~~~ 85 (377)
|.||+||.++++-..++ .-.+..||+++..++.+ +....-++||++|... .....+++|+++|.+.||+..+
T Consensus 5 ~giDlGt~~s~i~~~~~-~~~~~~psvv~~~~~~~---~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~ 80 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGR-GIVLNEPSVVAIRTDRD---AKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTE 80 (333)
T ss_pred eEEecCcceEEEEECCC-CEEEecCCEEEEecCCC---CCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHH
Confidence 99999999999865432 23356788888764321 0012336799998876 2456789999999999999999
Q ss_pred HHHHHhcccccccCCCC-CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCC
Q 017125 86 KIWHHTFYNELRVAPEE-HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGD 159 (377)
Q Consensus 86 ~~~~~~~~~~L~~~~~~-~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~ 159 (377)
++|++++.+.+...... .++++++|+.++..+|+. ++.+|+.+|++.+.++++|+||++++|. .+++|||+|+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~ 159 (333)
T TIGR00904 81 KMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGG 159 (333)
T ss_pred HHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCC
Confidence 99999997666532222 369999999999999887 5557799999999999999999999987 6899999999
Q ss_pred CceEEEEe-eCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCc
Q 017125 160 GVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAV 238 (377)
Q Consensus 160 ~~t~v~~v-~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 238 (377)
++|+++++ .+|....+ ..++||+++++.|.+++.++. .. ....+.++++|+++|++..+..++... .. ...
T Consensus 160 gttdvs~v~~~~~~~~~---~~~lGG~did~~l~~~l~~~~-~~--~~~~~~ae~lK~~l~~~~~~~~~~~~~-~~-~~~ 231 (333)
T TIGR00904 160 GTTEVAVISLGGIVVSR---SIRVGGDEFDEAIINYIRRTY-NL--LIGEQTAERIKIEIGSAYPLNDEPRKM-EV-RGR 231 (333)
T ss_pred CeEEEEEEEeCCEEecC---CccchHHHHHHHHHHHHHHHh-cc--cCCHHHHHHHHHHHhccccccccccce-ee-cCc
Confidence 99999999 66665543 358999999999999886432 11 113467999999999876542111100 00 001
Q ss_pred ceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChHHHHHH
Q 017125 239 EKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSK 317 (377)
Q Consensus 239 ~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~g~~~rl~~ 317 (377)
...+.+|++..+ + +..+.|++|.| ..++.+.|.+++++++.+.+..+++ +|+||||+|++|||.+||++
T Consensus 232 ~~~~~~~~~~~i--~--~~~~~e~i~~~------~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~ 301 (333)
T TIGR00904 232 DLVTGLPRTIEI--T--SVEVREALQEP------VNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSK 301 (333)
T ss_pred cccCCCCeEEEE--C--HHHHHHHHHHH------HHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHH
Confidence 122344554333 3 22566888877 2358888999999999988888886 89999999999999999999
Q ss_pred HHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++. +.+....+|..++-.||++++.-
T Consensus 302 ~~~--------~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 302 ETG--------LPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHC--------CCceecCChHHHHHHHHHHHHhC
Confidence 993 23445567899999999998653
No 20
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.1e-34 Score=271.37 Aligned_cols=302 Identities=18% Similarity=0.323 Sum_probs=227.7
Q ss_pred CEEEeCCCCceEEeeeCCCCCC-CCCCceeeeeCCCCccccCCCccceeccchhccc----CcceeeccccCCccCCHHH
Q 017125 9 PLVCDNGTGMVKAGFAGDDAPR-AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVNNWDD 83 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~~~P~-~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~ 83 (377)
.+.||+||.++++ |.. ..+. ...||+++...+. ..-.+||++|.... +...+.+|+++|.|.||+.
T Consensus 6 ~~giDlGt~~~~i-~~~-~~~~~~~~ps~va~~~~~-------~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~ 76 (335)
T PRK13929 6 EIGIDLGTANILV-YSK-NKGIILNEPSVVAVDTET-------KAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDM 76 (335)
T ss_pred eEEEEcccccEEE-EEC-CCcEEecCCcEEEEECCC-------CeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHH
Confidence 5999999999998 332 2233 3468888764321 12357999998763 4466789999999999999
Q ss_pred HHHHHHHhccc---ccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcC-----CceEEEE
Q 017125 84 MEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVL 155 (377)
Q Consensus 84 ~~~~~~~~~~~---~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-----~~~~lVV 155 (377)
.+.+|++++.+ .++..+...++++++|+.++..+|+.+.+ +++.+|++.+.++++|+||++++| ..+++||
T Consensus 77 ~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvv 155 (335)
T PRK13929 77 TTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVV 155 (335)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEE
Confidence 99999999863 46665656789999999999999999999 779999999999999999999997 4589999
Q ss_pred eCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccC
Q 017125 156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKIS 235 (377)
Q Consensus 156 DiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~ 235 (377)
|+|+++|+++++..|..+ .....++||++++++|.+++.++ +.+.. +...+|++|+++|++..+.+++. ...
T Consensus 156 DiG~gtt~v~vi~~~~~~--~~~~~~~GG~~id~~l~~~l~~~-~~~~~--~~~~AE~iK~~l~~~~~~~~~~~--~~v- 227 (335)
T PRK13929 156 DIGGGTTEVAIISFGGVV--SCHSIRIGGDQLDEDIVSFVRKK-YNLLI--GERTAEQVKMEIGYALIEHEPET--MEV- 227 (335)
T ss_pred EeCCCeEEEEEEEeCCEE--EecCcCCHHHHHHHHHHHHHHHH-hCcCc--CHHHHHHHHHHHcCCCCCCCCce--EEE-
Confidence 999999999999555444 23456899999999999998653 22221 34679999999998754421110 000
Q ss_pred CCcceEEEcCCCcEEecCCcccc--ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChH
Q 017125 236 SAVEKSYELPDGQVITIGAERFR--CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIA 312 (377)
Q Consensus 236 ~~~~~~~~lpd~~~i~i~~~~~~--~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~g~~ 312 (377)
......+.+| ..+.++.+++. +.|.+|+ +.+.|.++|.+++.+.+..+++ +|+||||+|++|||.
T Consensus 228 ~g~~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~ 295 (335)
T PRK13929 228 RGRDLVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIK 295 (335)
T ss_pred eCCccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHH
Confidence 0000011122 34566666665 4555543 8899999999999999989998 799999999999999
Q ss_pred HHHHHHHHhhCCCCceEEEECCCCCccccchhhhhh
Q 017125 313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 348 (377)
Q Consensus 313 ~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 348 (377)
+++++++.- .+....+|..++-.|+..+
T Consensus 296 e~l~~~~~~--------~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 296 EWLSEEIVV--------PVHVAANPLESVAIGTGRS 323 (335)
T ss_pred HHHHHHHCC--------CceeCCCHHHHHHHHHHHH
Confidence 999999942 2333567889999998776
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=7.1e-33 Score=253.66 Aligned_cols=305 Identities=18% Similarity=0.277 Sum_probs=218.0
Q ss_pred CCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcc----cCcceeeccccCCccCCHHH
Q 017125 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVNNWDD 83 (377)
Q Consensus 8 ~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~~ 83 (377)
+-+.||+||.+|++ |..+..=.+..||+++..+.. ..-..+|++|... .....+.+|+++|.|.|++.
T Consensus 2 ~~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~-------~~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~ 73 (326)
T PF06723_consen 2 KDIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDT-------GKILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEA 73 (326)
T ss_dssp SEEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT---------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHH
T ss_pred CceEEecCcccEEE-EECCCCEEEecCcEEEEECCC-------CeEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHH
Confidence 46899999999999 444444344568888877653 2335689999775 34578999999999999999
Q ss_pred HHHHHHHhccccccc-CCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeC
Q 017125 84 MEKIWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDS 157 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~-~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDi 157 (377)
.+.++++++.+.++. ......++++.|...+..+|+.+.+.+ ..+|+..|+++++|+||++++|. ...+||||
T Consensus 74 ~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDI 152 (326)
T PF06723_consen 74 AEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDI 152 (326)
T ss_dssp HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEE
Confidence 999999999666664 345667999999999999999999999 56999999999999999999985 47899999
Q ss_pred CCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCC
Q 017125 158 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSA 237 (377)
Q Consensus 158 G~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~ 237 (377)
|+++|+++.+..|.++ ..+.+++||+++++.+.+++++++ ++. ....++|++|.+++++....++. ....
T Consensus 153 G~GtTdiavislggiv--~s~si~~gG~~~DeaI~~~ir~~y-~l~--Ig~~tAE~iK~~~g~~~~~~~~~--~~~v--- 222 (326)
T PF06723_consen 153 GGGTTDIAVISLGGIV--ASRSIRIGGDDIDEAIIRYIREKY-NLL--IGERTAEKIKIEIGSASPPEEEE--SMEV--- 222 (326)
T ss_dssp -SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHHHHHH-SEE----HHHHHHHHHHH-BSS--HHHH--EEEE---
T ss_pred CCCeEEEEEEECCCEE--EEEEEEecCcchhHHHHHHHHHhh-Ccc--cCHHHHHHHHHhcceeeccCCCc--eEEE---
Confidence 9999999999999998 678889999999999999998654 221 24578999999999886433221 1100
Q ss_pred cceEEEcCCCc--EEecC-CccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChHH
Q 017125 238 VEKSYELPDGQ--VITIG-AERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIAD 313 (377)
Q Consensus 238 ~~~~~~lpd~~--~i~i~-~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~g~~~ 313 (377)
.--.+-+|. .+.++ .+-..+.+..+.+ +.+.|.+++.++|+++...+++ +|+||||+|+++||.+
T Consensus 223 --~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~---------I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~ 291 (326)
T PF06723_consen 223 --RGRDLITGLPKSIEITSSEVREAIEPPVDQ---------IVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDE 291 (326)
T ss_dssp --EEEETTTTCEEEEEEEHHHHHHHHHHHHHH---------HHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHH
T ss_pred --ECccccCCCcEEEEEcHHHHHHHHHHHHHH---------HHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHH
Confidence 001122222 22222 1333344444444 8999999999999999988775 5999999999999999
Q ss_pred HHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017125 314 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 314 rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+|++++ .++|...++|.+++-.|+..+..
T Consensus 292 ~i~~~~--------~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 292 YISEET--------GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHH--------SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHH--------CCCEEEcCCHHHHHHHHHHHHHh
Confidence 999999 34566677889999999877654
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.98 E-value=1.5e-31 Score=250.95 Aligned_cols=306 Identities=18% Similarity=0.275 Sum_probs=219.6
Q ss_pred EEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhccc----CcceeeccccCCccCCHHHHH
Q 017125 10 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVNNWDDME 85 (377)
Q Consensus 10 viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~~~ 85 (377)
+.||+||.++++... +..-.+..||+++...+. +.-..+|++|.+.. ....+.+|+++|.+.||+..+
T Consensus 6 ~gIDlGt~~~~i~~~-~~~~v~~~psvv~~~~~~-------~~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~ 77 (336)
T PRK13928 6 IGIDLGTANVLVYVK-GKGIVLNEPSVVAIDKNT-------NKVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTE 77 (336)
T ss_pred eEEEcccccEEEEEC-CCCEEEccCCEEEEECCC-------CeEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHH
Confidence 999999999999655 333334578888765332 12357899987662 345677999999999999999
Q ss_pred HHHHHhcccccccC-CCCCc-EEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCC
Q 017125 86 KIWHHTFYNELRVA-PEEHP-VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSG 158 (377)
Q Consensus 86 ~~~~~~~~~~L~~~-~~~~~-vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG 158 (377)
.+|++++ +.+... ...+| +++++|..++...|+ .++.+++.+|++.+.++++|+||++++|. .+++|||+|
T Consensus 78 ~~l~~~~-~~~~~~~~~~~p~~vitvP~~~~~~~r~-~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiG 155 (336)
T PRK13928 78 KMLKYFI-NKACGKRFFSKPRIMICIPTGITSVEKR-AVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIG 155 (336)
T ss_pred HHHHHHH-HHHhccCCCCCCeEEEEeCCCCCHHHHH-HHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeC
Confidence 9999998 444332 34566 888998777766555 55566699999999999999999999986 679999999
Q ss_pred CCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCc
Q 017125 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAV 238 (377)
Q Consensus 159 ~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 238 (377)
+++|+++++..|..+. ....++||+++|+.+.+++.++. .+. .....++++|++++.+..+..+. .... ...
T Consensus 156 ggttdvsvv~~g~~~~--~~~~~lGG~did~~i~~~l~~~~-~~~--~~~~~ae~lK~~~~~~~~~~~~~--~~~v-~g~ 227 (336)
T PRK13928 156 GGTTDIAVLSLGGIVT--SSSIKVAGDKFDEAIIRYIRKKY-KLL--IGERTAEEIKIKIGTAFPGAREE--EMEI-RGR 227 (336)
T ss_pred CCeEEEEEEEeCCEEE--eCCcCCHHHHHHHHHHHHHHHHh-chh--cCHHHHHHHHHHhcccccccCCc--EEEE-ecc
Confidence 9999999999997774 34679999999999999986432 111 12356999999988764331100 0000 000
Q ss_pred ceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhc-CceeccCCcCCcChHHHHHH
Q 017125 239 EKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYG-NIVLSGGSTMFPGIADRMSK 317 (377)
Q Consensus 239 ~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~-nIvl~GG~s~i~g~~~rl~~ 317 (377)
.....+|. .+.++.+++. |+++.+ ...+.+.|.+++.+++.+.+...++ +|+||||+|++||+.++|++
T Consensus 228 ~~~~~~~~--~~~i~~~~~~--eii~~~------~~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~ 297 (336)
T PRK13928 228 DLVTGLPK--TITVTSEEIR--EALKEP------VSAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAE 297 (336)
T ss_pred cccCCCce--EEEECHHHHH--HHHHHH------HHHHHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHH
Confidence 00001111 2334433333 444433 1237888899999998888888887 79999999999999999999
Q ss_pred HHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++.. .+....+|..++-.||++++.-
T Consensus 298 ~~~~--------~v~~~~~P~~ava~Gaa~~~~~ 323 (336)
T PRK13928 298 ETKV--------PVYIAEDPISCVALGTGKMLEN 323 (336)
T ss_pred HHCC--------CceecCCHHHHHHHHHHHHHhc
Confidence 9942 2333457899999999998643
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.94 E-value=7.2e-26 Score=199.96 Aligned_cols=313 Identities=18% Similarity=0.229 Sum_probs=226.2
Q ss_pred CCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcc----cCcceeeccccCCccCCHH
Q 017125 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK----RGILTLKYPIEHGIVNNWD 82 (377)
Q Consensus 7 ~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~----~~~~~~~~p~~~g~i~d~~ 82 (377)
.+.+.||+||.+|++- .-+..=-...||+++...... ...-..||++|..+ .+.....+|+++|+|.|++
T Consensus 6 s~diGIDLGTanTlV~-~k~kgIVl~ePSVVAi~~~~~-----~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~ 79 (342)
T COG1077 6 SNDIGIDLGTANTLVY-VKGKGIVLNEPSVVAIESEGK-----TKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFE 79 (342)
T ss_pred cccceeeecccceEEE-EcCceEEecCceEEEEeecCC-----CceEEEehHHHHHHhccCCCCceEEeecCCcEeecHH
Confidence 3589999999999994 333333456688887765311 12346799999886 3456789999999999999
Q ss_pred HHHHHHHHhcccccccC--CCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEE
Q 017125 83 DMEKIWHHTFYNELRVA--PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVL 155 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~--~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVV 155 (377)
..+.+++|.+++...-. +..-.++++.|.-.....|+.+.+.+ ++.|...|+++++|.+|+++.|. +...||
T Consensus 80 ~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvv 158 (342)
T COG1077 80 VTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVV 158 (342)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCEEE
Confidence 99999999875444222 23445999999999999999999988 77999999999999999999985 458999
Q ss_pred eCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccC
Q 017125 156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKIS 235 (377)
Q Consensus 156 DiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~ 235 (377)
|||+++|.|..+..|-++ ...+..+||+.+++.+..++++++--.. ....++++|.+.+++..+...+..+...
T Consensus 159 DIGgGTTevaVISlggiv--~~~Sirv~GD~~De~Ii~yvr~~~nl~I---Ge~taE~iK~eiG~a~~~~~~~~~~~eV- 232 (342)
T COG1077 159 DIGGGTTEVAVISLGGIV--SSSSVRVGGDKMDEAIIVYVRKKYNLLI---GERTAEKIKIEIGSAYPEEEDEELEMEV- 232 (342)
T ss_pred EeCCCceeEEEEEecCEE--EEeeEEEecchhhHHHHHHHHHHhCeee---cHHHHHHHHHHhcccccccCCccceeeE-
Confidence 999999999999988888 5677899999999999999976532222 3456999999999987642211000000
Q ss_pred CCcceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcC-ceeccCCcCCcChHHH
Q 017125 236 SAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGN-IVLSGGSTMFPGIADR 314 (377)
Q Consensus 236 ~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~n-Ivl~GG~s~i~g~~~r 314 (377)
.......-+|. .+.++.+. +.|.|-.+ ...|.+.|...+.++|.++-...+++ |++|||+|++.||.+.
T Consensus 233 ~Grdl~~GlPk--~i~i~s~e--v~eal~~~------v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~ 302 (342)
T COG1077 233 RGRDLVTGLPK--TITINSEE--IAEALEEP------LNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRL 302 (342)
T ss_pred EeeecccCCCe--eEEEcHHH--HHHHHHHH------HHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHh
Confidence 00000001111 11222111 11222111 23488888899999999999999988 9999999999999999
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017125 315 MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+.++. .+.+.-.++|-..+-+|+.....
T Consensus 303 i~~et--------~~pv~ia~~pL~~Va~G~G~~le 330 (342)
T COG1077 303 LSEET--------GVPVIIADDPLTCVAKGTGKALE 330 (342)
T ss_pred HHhcc--------CCeEEECCChHHHHHhccchhhh
Confidence 99887 45666677787777777655433
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.88 E-value=1.9e-21 Score=172.94 Aligned_cols=208 Identities=16% Similarity=0.188 Sum_probs=159.1
Q ss_pred eccccCCccCCHHHHHHHHHHhccc---ccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhh
Q 017125 70 KYPIEHGIVNNWDDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 146 (377)
Q Consensus 70 ~~p~~~g~i~d~~~~~~~~~~~~~~---~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~ 146 (377)
..|+.+|.|.|++..+++++++... .++ ..-..+++++|..++..+|+.+.+.+ +..|++.+.++++|+|++.+
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g--~~~~~vvisVP~~~~~~~r~a~~~a~-~~aGl~~~~li~ep~Aaa~~ 104 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLG--IELTHAATAIPPGTIEGDPKVIVNVI-ESAGIEVLHVLDEPTAAAAV 104 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhC--CCcCcEEEEECCCCCcccHHHHHHHH-HHcCCceEEEeehHHHHHHH
Confidence 5789999999999999999999732 232 33468999999999999998877766 78999999999999999999
Q ss_pred cCCceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHH
Q 017125 147 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYE 226 (377)
Q Consensus 147 ~g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~ 226 (377)
++....+|+|+|+++|+++.+.+|.++ .....++||+++++.+.+.+. . +.+.+|.+|.+++. .
T Consensus 105 ~~~~~~~vvDiGggtt~i~i~~~G~i~--~~~~~~~GG~~it~~Ia~~~~---i------~~~~AE~~K~~~~~----~- 168 (239)
T TIGR02529 105 LQIKNGAVVDVGGGTTGISILKKGKVI--YSADEPTGGTHMSLVLAGAYG---I------SFEEAEEYKRGHKD----E- 168 (239)
T ss_pred hcCCCcEEEEeCCCcEEEEEEECCeEE--EEEeeecchHHHHHHHHHHhC---C------CHHHHHHHHHhcCC----H-
Confidence 888788999999999999999999888 567789999999999876662 2 34668889887552 1
Q ss_pred HHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCc
Q 017125 227 QELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGST 306 (377)
Q Consensus 227 ~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s 306 (377)
++.. ...+.+. ..+.+.|.+.+.+.+. +.|+||||+|
T Consensus 169 ~~~~---------------------------~~i~~~~---------~~i~~~i~~~l~~~~~-------~~v~LtGG~a 205 (239)
T TIGR02529 169 EEIF---------------------------PVVKPVY---------QKMASIVKRHIEGQGV-------KDLYLVGGAC 205 (239)
T ss_pred HHHH---------------------------HHHHHHH---------HHHHHHHHHHHHhCCC-------CEEEEECchh
Confidence 1100 0001111 1144555555554443 4799999999
Q ss_pred CCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhh
Q 017125 307 MFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSI 347 (377)
Q Consensus 307 ~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi 347 (377)
++||+.+.|++.+. +.+..+.+|.+++-.|+++
T Consensus 206 ~ipgl~e~l~~~lg--------~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 206 SFSGFADVFEKQLG--------LNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred cchhHHHHHHHHhC--------CCcccCCCCCeehhheeec
Confidence 99999999999883 2334467889999999865
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.85 E-value=8.5e-20 Score=165.14 Aligned_cols=243 Identities=15% Similarity=0.138 Sum_probs=174.0
Q ss_pred CCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHH
Q 017125 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDM 84 (377)
Q Consensus 5 ~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~ 84 (377)
.....++||+||+++|+=.. +..+. .++ +|+ ....+++.|.+.|++..
T Consensus 22 ~~~~~~~iDiGSssi~~vv~-~~~~~-----~~~-----------------~~~---------~~~~~vr~G~i~di~~a 69 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVL-DEDGQ-----PVA-----------------GAL---------EWADVVRDGIVVDFIGA 69 (267)
T ss_pred CCCEEEEEEccCceEEEEEE-cCCCC-----EEE-----------------EEe---------ccccccCCCEEeeHHHH
Confidence 35567999999999997554 32222 111 221 23567899999999999
Q ss_pred HHHHHHhccc---ccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCc
Q 017125 85 EKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 161 (377)
Q Consensus 85 ~~~~~~~~~~---~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~ 161 (377)
.+.++++... .++.. -..++++.|......++..+.+.+ +..|++...++.+|.+++.+++...++|||||+++
T Consensus 70 ~~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~~~~-~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggt 146 (267)
T PRK15080 70 VTIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAIINVV-ESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGT 146 (267)
T ss_pred HHHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHHHHH-HHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCc
Confidence 8888888631 33433 356788899988777788777555 88999999999999999998887778999999999
Q ss_pred eEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceE
Q 017125 162 SHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKS 241 (377)
Q Consensus 162 t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~ 241 (377)
|+++.+.+|.++ .....++||+++++.+.+.+. . ..+.+|.+|.+... .++..
T Consensus 147 t~i~v~~~g~~~--~~~~~~~GG~~it~~Ia~~l~---i------~~~eAE~lK~~~~~-----~~~~~----------- 199 (267)
T PRK15080 147 TGISILKDGKVV--YSADEPTGGTHMSLVLAGAYG---I------SFEEAEQYKRDPKH-----HKEIF----------- 199 (267)
T ss_pred EEEEEEECCeEE--EEecccCchHHHHHHHHHHhC---C------CHHHHHHHHhccCC-----HHHHH-----------
Confidence 999999999887 456789999999999987762 2 34568888876431 00000
Q ss_pred EEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHh
Q 017125 242 YELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITA 321 (377)
Q Consensus 242 ~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~ 321 (377)
.+.+.+++. +.+.|.+.+.+. -.+.|+||||+|++||+.+.+++.+..
T Consensus 200 ----------------~ii~~~~~~---------i~~~i~~~l~~~-------~~~~IvLtGG~s~lpgl~e~l~~~lg~ 247 (267)
T PRK15080 200 ----------------PVVKPVVEK---------MASIVARHIEGQ-------DVEDIYLVGGTCCLPGFEEVFEKQTGL 247 (267)
T ss_pred ----------------HHHHHHHHH---------HHHHHHHHHhcC-------CCCEEEEECCcccchhHHHHHHHHhCC
Confidence 000111111 334444444433 346899999999999999999999832
Q ss_pred hCCCCceEEEECCCCCccccchhhhhhh
Q 017125 322 LAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 322 ~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
+ +..+++|.+++-.|+.+|+
T Consensus 248 ------~--v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 248 ------P--VHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred ------C--cccCCCchHHHHHHHHhhC
Confidence 2 2336788999999998874
No 26
>CHL00094 dnaK heat shock protein 70
Probab=99.81 E-value=2e-19 Score=181.28 Aligned_cols=297 Identities=19% Similarity=0.214 Sum_probs=179.3
Q ss_pred CCEEEeCCCCceEEeeeCCCCCC--------CCCCceeeeeCCCCccccCCCccceeccchhcc------cCcceeec--
Q 017125 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKY-- 71 (377)
Q Consensus 8 ~~viiD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~-- 71 (377)
..|.||+||+++++++..+..|. ..+||+++... ....+||+.|... +....+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~---------~~~~~vG~~A~~~~~~~p~~ti~~~Krli 73 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTK---------KGDLLVGQIAKRQAVINPENTFYSVKRFI 73 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcC---------CCCEEECHHHHHhHHhCccceehhhHHhc
Confidence 58999999999999998665554 23455554422 2234566554431 00011111
Q ss_pred --------------cc----------------cCCccCCHHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhH
Q 017125 72 --------------PI----------------EHGIVNNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR 118 (377)
Q Consensus 72 --------------p~----------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~ 118 (377)
|+ ....+...+....+++++.. ..++. .-..+++++|..++..+|
T Consensus 74 G~~~~~~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~--~v~~~VItVPa~f~~~qR 151 (621)
T CHL00094 74 GRKFSEISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGE--TVTQAVITVPAYFNDSQR 151 (621)
T ss_pred CCChHHHHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHH
Confidence 11 11112233445556655532 22332 235699999999999999
Q ss_pred HHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCcee---cccceEEecccHHHHHHH
Q 017125 119 EKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYA---LPHAILRLDLAGRDLTDA 190 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~---~~~~~~~~~~GG~~i~~~ 190 (377)
+.+.+.+ +..|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+..+.. +..+....++||.++++.
T Consensus 152 ~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~ 230 (621)
T CHL00094 152 QATKDAG-KIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKK 230 (621)
T ss_pred HHHHHHH-HHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHH
Confidence 9888777 78999999999999999999874 46899999999999998864422 122233568999999999
Q ss_pred HHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCC------C-cEE--e
Q 017125 191 LMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPD------G-QVI--T 251 (377)
Q Consensus 191 l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd------~-~~i--~ 251 (377)
|.+++.++ +.++..... ...++.+|..++... ...+.+|. | ..+ .
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~ 294 (621)
T CHL00094 231 IVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLT----------------QTEINLPFITATQTGPKHIEKT 294 (621)
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------ceEEEEeecccCCCCCeeEEEE
Confidence 99877542 222221111 134566666655211 11122210 1 112 2
Q ss_pred cCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEE
Q 017125 252 IGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIK 330 (377)
Q Consensus 252 i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~ 330 (377)
+..++|. ..+.++.. +.+.|.+++.+. .+...-++.|+|+||+|++|++.+.+++.+.. .
T Consensus 295 itR~~fe~l~~~l~~~---------~~~~i~~~L~~a--~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~ 355 (621)
T CHL00094 295 LTRAKFEELCSDLINR---------CRIPVENALKDA--KLDKSDIDEVVLVGGSTRIPAIQELVKKLLGK--------K 355 (621)
T ss_pred EcHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCChhhCcEEEEECCccCChHHHHHHHHHhCC--------C
Confidence 2222221 11111111 333344444433 23344568999999999999999998877632 1
Q ss_pred EECCCCCccccchhhhhhhcc
Q 017125 331 VVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 331 v~~~~~~~~~~w~Gasi~a~l 351 (377)
+....+|+.++..||+++|..
T Consensus 356 ~~~~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 356 PNQSVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred cCcCCCchhHHHhhhHHHHHH
Confidence 233457789999999999875
No 27
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=99.81 E-value=4.4e-19 Score=179.52 Aligned_cols=216 Identities=18% Similarity=0.232 Sum_probs=142.1
Q ss_pred CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--Ccee-c
Q 017125 102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-L 173 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~ 173 (377)
-..++|++|..++..+|+.+.+.+ +..|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+. +|.. +
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v 252 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKDAG-KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEV 252 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEE
Confidence 367999999999999999888777 88999999999999999999975 4789999999999999774 5533 2
Q ss_pred ccceEEecccHHHHHHHHHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEE
Q 017125 174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYE 243 (377)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
..+.....+||.++++.|.+++..+ +.++..... ...++..|+.++.-. .....+.
T Consensus 253 ~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~--------------~~~i~i~ 318 (663)
T PTZ00400 253 KATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKT--------------QTEINLP 318 (663)
T ss_pred EecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCC--------------ceEEEEE
Confidence 2233456899999999999887643 222221100 123555565554210 0111111
Q ss_pred --cCC--C-c--EEecCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHH
Q 017125 244 --LPD--G-Q--VITIGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRM 315 (377)
Q Consensus 244 --lpd--~-~--~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl 315 (377)
..| | . .+.++.+.|. ..+.+|.. +.+.|.+++.+.. +.+.-++.|+|+||+|++|++.+.+
T Consensus 319 ~~~~d~~g~~~~~~~itR~efe~l~~~l~~~---------~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l 387 (663)
T PTZ00400 319 FITADQSGPKHLQIKLSRAKLEELTHDLLKK---------TIEPCEKCIKDAG--VKKDELNDVILVGGMTRMPKVSETV 387 (663)
T ss_pred eeccCCCCceEEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHHHCcEEEEECCccCChHHHHHH
Confidence 111 1 1 2333333331 22223222 4455555555442 2344578999999999999999888
Q ss_pred HHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 316 SKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 316 ~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++.+.. .+....+|+.++-.||+++|..
T Consensus 388 ~~~f~~--------~~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 388 KKIFGK--------EPSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred HHHhCC--------CcccCCCCccceeeccHHHHHh
Confidence 877632 1233457889999999999865
No 28
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=99.80 E-value=4.2e-19 Score=177.98 Aligned_cols=297 Identities=21% Similarity=0.221 Sum_probs=180.9
Q ss_pred CEEEeCCCCceEEeeeCCCCCC--------CCCCceeeeeCCCCccccCCCccceeccchhccc------Ccceee----
Q 017125 9 PLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTLK---- 70 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~~---- 70 (377)
+|.||+||+++.+++..+..|. ..+||+++...+ ....||..|.... ....++
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG 71 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKD---------GGVEVGKEALAAAAEDPKNTISSVKRLMG 71 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCC---------CCEEecHHHHHhhhhChhhhHHHHHHHhC
Confidence 4789999999999987655443 245666655322 2456676654320 000001
Q ss_pred -----------ccc--------------cCCccCCHHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHHHH
Q 017125 71 -----------YPI--------------EHGIVNNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMT 122 (377)
Q Consensus 71 -----------~p~--------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~ 122 (377)
+|+ ..+.+...+....+++++.. ..++.. -..++|++|..++..+|+.+.
T Consensus 72 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~--v~~~VItVPa~f~~~qR~a~~ 149 (599)
T TIGR01991 72 RSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGD--LVGAVITVPAYFDDAQRQATK 149 (599)
T ss_pred CCccchhhcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCC--cceEEEEECCCCCHHHHHHHH
Confidence 122 11222233444555555531 234322 357999999999999999988
Q ss_pred hhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--Ccee-cccceEEecccHHHHHHHHHHH
Q 017125 123 QIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKI 194 (377)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~~~ 194 (377)
+.+ +.+|++.+.++++|.||+++++. .+.+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.++
T Consensus 150 ~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~ 228 (599)
T TIGR01991 150 DAA-RLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKW 228 (599)
T ss_pred HHH-HHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 777 88999999999999999998863 4689999999999999775 3422 2222234589999999999999
Q ss_pred HHHc-CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEE--ecCCcccc-ccccCCC
Q 017125 195 LTER-GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVI--TIGAERFR-CPEVLFQ 265 (377)
Q Consensus 195 l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i--~i~~~~~~-~~E~lf~ 265 (377)
+.++ +.+...... ...++..|+.++.- ......+.. +|..+ .++.+.|. ..+.++.
T Consensus 229 l~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~--------------~~~~i~i~~-~g~~~~~~itr~efe~l~~~ll~ 293 (599)
T TIGR01991 229 ILKQLGISADLNPEDQRLLLQAARAAKEALTDA--------------ESVEVDFTL-DGKDFKGKLTRDEFEALIQPLVQ 293 (599)
T ss_pred HHHhhCCCCCCCHHHHHHHHHHHHHHHHhCCCC--------------ceEEEEEEE-CCcEEEEEEeHHHHHHHHHHHHH
Confidence 8654 333211111 12244445444321 111222222 23333 23333221 1222222
Q ss_pred CccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhh
Q 017125 266 PSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGG 345 (377)
Q Consensus 266 p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Ga 345 (377)
. +.+.|.+++.... +...-++.|+|+||+|++|++.+++++.+.. .+....+|+.++-.||
T Consensus 294 ~---------i~~~i~~~L~~a~--~~~~~id~ViLvGGssriP~V~~~l~~~f~~--------~~~~~~npdeaVA~GA 354 (599)
T TIGR01991 294 K---------TLSICRRALRDAG--LSVEEIKGVVLVGGSTRMPLVRRAVAELFGQ--------EPLTDIDPDQVVALGA 354 (599)
T ss_pred H---------HHHHHHHHHHHcC--CChhhCCEEEEECCcCCChHHHHHHHHHhCC--------CCCCCCCCcHHHHHHH
Confidence 1 3444445554332 2344568899999999999999998877632 1233567899999999
Q ss_pred hhhhcc
Q 017125 346 SILASL 351 (377)
Q Consensus 346 si~a~l 351 (377)
+++|..
T Consensus 355 ai~a~~ 360 (599)
T TIGR01991 355 AIQADL 360 (599)
T ss_pred HHHHHH
Confidence 999875
No 29
>PLN03184 chloroplast Hsp70; Provisional
Probab=99.79 E-value=9.6e-19 Score=177.14 Aligned_cols=297 Identities=17% Similarity=0.207 Sum_probs=179.6
Q ss_pred CCEEEeCCCCceEEeeeCCCCCC--------CCCCceeeeeCCCCccccCCCccceeccchhcc------cCcceee---
Q 017125 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLK--- 70 (377)
Q Consensus 8 ~~viiD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~--- 70 (377)
.+|.||+||+++++++..+..|. ..+||+++... ....+||+.|... +....++
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~---------~~~~~vG~~A~~~~~~~p~~ti~~~Krli 110 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK---------NGDRLVGQIAKRQAVVNPENTFFSVKRFI 110 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcC---------CCCEEECHHHHHhhhhCchhhhHHHHHhh
Confidence 57999999999999998665554 23455554422 2234566655432 0000011
Q ss_pred -------------ccc----------------cCCccCCHHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhH
Q 017125 71 -------------YPI----------------EHGIVNNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR 118 (377)
Q Consensus 71 -------------~p~----------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~ 118 (377)
+|+ ....+...+....+|+++.. ..++ ..-..++|++|..++..+|
T Consensus 111 G~~~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg--~~v~~~VITVPa~f~~~qR 188 (673)
T PLN03184 111 GRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLN--DKVTKAVITVPAYFNDSQR 188 (673)
T ss_pred CCCcchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHH
Confidence 111 11122233445566666542 2233 2236799999999999999
Q ss_pred HHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCcee---cccceEEecccHHHHHHH
Q 017125 119 EKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYA---LPHAILRLDLAGRDLTDA 190 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~---~~~~~~~~~~GG~~i~~~ 190 (377)
+.+.+.+ +..|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+.-+.. +..+....++||.++++.
T Consensus 189 ~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~ 267 (673)
T PLN03184 189 TATKDAG-RIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 267 (673)
T ss_pred HHHHHHH-HHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHH
Confidence 9887766 88999999999999999998864 47899999999999987753321 122223468999999999
Q ss_pred HHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC------CC-cEE--e
Q 017125 191 LMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP------DG-QVI--T 251 (377)
Q Consensus 191 l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp------d~-~~i--~ 251 (377)
|.+++..+ +.+...... ...++..|+.++... ...+.++ ++ ..+ .
T Consensus 268 L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~ 331 (673)
T PLN03184 268 IVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLT----------------QTSISLPFITATADGPKHIDTT 331 (673)
T ss_pred HHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCC----------------cceEEEEeeeccCCCCceEEEE
Confidence 99887542 222211111 223555565554311 1111111 11 222 2
Q ss_pred cCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEE
Q 017125 252 IGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIK 330 (377)
Q Consensus 252 i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~ 330 (377)
+..+.|. ..+.+++. +.+.|.+++..... ...-++.|+|+||+|++|.+.+++++.+.. .
T Consensus 332 itR~~fe~l~~~l~~r---------~~~~i~~~L~~a~~--~~~dId~ViLvGGssriP~V~~~i~~~fg~--------~ 392 (673)
T PLN03184 332 LTRAKFEELCSDLLDR---------CKTPVENALRDAKL--SFKDIDEVILVGGSTRIPAVQELVKKLTGK--------D 392 (673)
T ss_pred ECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCC--ChhHccEEEEECCccccHHHHHHHHHHhCC--------C
Confidence 3333322 12222222 44445555544432 234458999999999999999988877632 1
Q ss_pred EECCCCCccccchhhhhhhcc
Q 017125 331 VVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 331 v~~~~~~~~~~w~Gasi~a~l 351 (377)
+....+|+.++-.||+++|..
T Consensus 393 ~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 393 PNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred cccccCcchHHHHHHHHHHHH
Confidence 223346789999999999874
No 30
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=99.79 E-value=5.7e-19 Score=177.90 Aligned_cols=296 Identities=18% Similarity=0.236 Sum_probs=177.7
Q ss_pred CEEEeCCCCceEEeeeCCCCCC--------CCCCceeeeeCCCCccccCCCccceeccchhccc------Ccceeec---
Q 017125 9 PLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTLKY--- 71 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~~~--- 71 (377)
+|.||+||+++++++..+..|. ..+||+++... +...++|+.|.... ....+++
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~---------~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG 72 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTK---------NGERLVGQPAKRQAVTNPENTIYSIKRFMG 72 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeC---------CCCEEECHHHHHhhhhCchhhhHHHHHHhC
Confidence 6899999999999998665554 23455554422 22456777664320 1111111
Q ss_pred -------------ccc------------CCccCC-HHHHHHHHHHhc---ccccccCCCCCcEEEeeCCCCCHHhHHHHH
Q 017125 72 -------------PIE------------HGIVNN-WDDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREKMT 122 (377)
Q Consensus 72 -------------p~~------------~g~i~d-~~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~ 122 (377)
|+. .|.... .+....+++++. ...++. .-..++|++|..++..+|+.+.
T Consensus 73 ~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~--~v~~~VItVPa~f~~~qR~a~~ 150 (595)
T TIGR02350 73 RRFDEVTEEAKRVPYKVVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGE--KVTEAVITVPAYFNDAQRQATK 150 (595)
T ss_pred CCchHHHHHhhcCCeeEEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHH
Confidence 110 111112 233344444442 123332 2357999999999999999988
Q ss_pred hhhcccCCCCeEEEechhhhhhhhcCC------ceEEEEeCCCCceEEEEee--Ccee-cccceEEecccHHHHHHHHHH
Q 017125 123 QIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMK 193 (377)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~~ 193 (377)
+.+ +.+|++.+.++++|.||+++++. .+.+|+|+|+++++++.+. +|.. +..+.....+||.++++.|.+
T Consensus 151 ~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~ 229 (595)
T TIGR02350 151 DAG-KIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIID 229 (595)
T ss_pred HHH-HHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHH
Confidence 766 88999999999999999998763 4689999999999998774 3322 222223458999999999988
Q ss_pred HHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC----C--C-c--EEecCC
Q 017125 194 ILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP----D--G-Q--VITIGA 254 (377)
Q Consensus 194 ~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp----d--~-~--~i~i~~ 254 (377)
++..+ +.++..... ...++..|..++.. ....+.+| | | . .+.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~----------------~~~~i~i~~~~~~~~g~~~~~~~itr 293 (595)
T TIGR02350 230 WLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSV----------------LSTEINLPFITADASGPKHLEMTLTR 293 (595)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CceEEEeeecccCCCCCeeEEEEEeH
Confidence 87532 222221110 12355556555421 11112111 1 1 1 223333
Q ss_pred cccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEEC
Q 017125 255 ERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA 333 (377)
Q Consensus 255 ~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~ 333 (377)
+.|. ..+.++.. +.+.|.+++.... +...-++.|+|+||+|++|++.+.+++.+.. .+..
T Consensus 294 ~~fe~l~~~l~~~---------~~~~i~~~l~~a~--~~~~~i~~V~LvGGssriP~v~~~i~~~f~~--------~~~~ 354 (595)
T TIGR02350 294 AKFEELTADLVER---------TKEPVRQALKDAG--LSASDIDEVILVGGSTRIPAVQELVKDFFGK--------EPNK 354 (595)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHcC--CCHhHCcEEEEECCcccChHHHHHHHHHhCC--------cccC
Confidence 3321 12222222 4444455554432 2334568899999999999999888876631 2344
Q ss_pred CCCCccccchhhhhhhcc
Q 017125 334 PPERKYSVWIGGSILASL 351 (377)
Q Consensus 334 ~~~~~~~~w~Gasi~a~l 351 (377)
..+|+.++..||+++|..
T Consensus 355 ~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 355 SVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred CcCcHHHHHHHHHHHHHH
Confidence 567889999999999864
No 31
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=99.79 E-value=6.3e-19 Score=178.22 Aligned_cols=297 Identities=18% Similarity=0.224 Sum_probs=178.5
Q ss_pred CCEEEeCCCCceEEeeeCCCCCC--------CCCCceeeeeCCCCccccCCCccceeccchhccc------Ccceeec--
Q 017125 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTLKY-- 71 (377)
Q Consensus 8 ~~viiD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~~~-- 71 (377)
.+|.||+||+++++++..+..|. ..+||+++... +...++|+.|.... ....+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~---------~~~~~vG~~A~~~~~~~p~~~i~~~Kr~i 73 (627)
T PRK00290 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTK---------DGERLVGQPAKRQAVTNPENTIFSIKRLM 73 (627)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeC---------CCCEEEcHHHHHhhhhCchhhHHHHHHHh
Confidence 47999999999999998655443 34555555432 22355666654320 0011111
Q ss_pred --------------ccc-------------CCccCC-HHHHHHHHHHhc---ccccccCCCCCcEEEeeCCCCCHHhHHH
Q 017125 72 --------------PIE-------------HGIVNN-WDDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREK 120 (377)
Q Consensus 72 --------------p~~-------------~g~i~d-~~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~~~~~~~~ 120 (377)
|+. .|.... .+....+++++. ...++. .-..++|++|..++..+|+.
T Consensus 74 G~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~--~v~~~VItVPa~f~~~qR~a 151 (627)
T PRK00290 74 GRRDEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGE--KVTEAVITVPAYFNDAQRQA 151 (627)
T ss_pred CCCchHHHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCC--CCceEEEEECCCCCHHHHHH
Confidence 110 121122 233344444442 123332 23579999999999999998
Q ss_pred HHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCce--e-cccceEEecccHHHHHHHHH
Q 017125 121 MTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGY--A-LPHAILRLDLAGRDLTDALM 192 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~--~-~~~~~~~~~~GG~~i~~~l~ 192 (377)
+.+.+ +.+|++.+.++++|.||+++++. .+.+|+|+|+++++++.+.-+. . +..+....++||.++++.|.
T Consensus 152 ~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~ 230 (627)
T PRK00290 152 TKDAG-KIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRII 230 (627)
T ss_pred HHHHH-HHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHH
Confidence 87777 88999999999999999998864 5799999999999998775431 1 22223346899999999999
Q ss_pred HHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC----C--C-c--EEecC
Q 017125 193 KILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP----D--G-Q--VITIG 253 (377)
Q Consensus 193 ~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp----d--~-~--~i~i~ 253 (377)
+++.++ +.++..... ...++..|+.++.- ....+.++ | | . .+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~----------------~~~~i~i~~~~~d~~g~~~~~~~it 294 (627)
T PRK00290 231 DYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSA----------------QQTEINLPFITADASGPKHLEIKLT 294 (627)
T ss_pred HHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCC----------------CeEEEEEeecccCCCCCeEEEEEEC
Confidence 887542 222221110 12345555554421 11122221 1 1 1 22333
Q ss_pred Ccccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEE
Q 017125 254 AERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVV 332 (377)
Q Consensus 254 ~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~ 332 (377)
.+.|. ..+.++.. +.+.|.+++..... ...-++.|+|+||+|++|.+.+++++.+.. .+.
T Consensus 295 R~~fe~l~~~l~~~---------~~~~i~~~l~~a~~--~~~~id~ViLvGGssriP~v~~~l~~~fg~--------~~~ 355 (627)
T PRK00290 295 RAKFEELTEDLVER---------TIEPCKQALKDAGL--SVSDIDEVILVGGSTRMPAVQELVKEFFGK--------EPN 355 (627)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHcCC--ChhhCcEEEEECCcCCChHHHHHHHHHhCC--------CCC
Confidence 33321 12222222 44445555554432 234468899999999999999998877632 223
Q ss_pred CCCCCccccchhhhhhhcc
Q 017125 333 APPERKYSVWIGGSILASL 351 (377)
Q Consensus 333 ~~~~~~~~~w~Gasi~a~l 351 (377)
...+|+.++..||+++|..
T Consensus 356 ~~~npdeava~GAa~~aa~ 374 (627)
T PRK00290 356 KGVNPDEVVAIGAAIQGGV 374 (627)
T ss_pred cCcCChHHHHHhHHHHHHH
Confidence 4457889999999999864
No 32
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=99.79 E-value=1.5e-18 Score=172.95 Aligned_cols=225 Identities=16% Similarity=0.187 Sum_probs=147.3
Q ss_pred HHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEE
Q 017125 82 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGI 153 (377)
Q Consensus 82 ~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~l 153 (377)
+....+++++-. ..++. .-..+++++|..++..+|+.+.+.+ +..|++.+.++++|.||++++|. .+.+
T Consensus 120 ei~a~iL~~lk~~ae~~lg~--~v~~aVITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vl 196 (595)
T PRK01433 120 EIAAEIFIYLKNQAEEQLKT--NITKAVITVPAHFNDAARGEVMLAA-KIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYL 196 (595)
T ss_pred HHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHHHHH-HHcCCCEEEEecCcHHHHHHHhcccCCCCEEE
Confidence 444555555431 23332 2357999999999999999888776 88999999999999999999874 3579
Q ss_pred EEeCCCCceEEEEee--Ccee-cccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHH
Q 017125 154 VLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELE 230 (377)
Q Consensus 154 VVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~ 230 (377)
|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.+++..+...-........++..|+.++.-.
T Consensus 197 V~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~ekaK~~LS~~~-------- 268 (595)
T PRK01433 197 VYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFDLPNSIDTLQLAKKAKETLTYKD-------- 268 (595)
T ss_pred EEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCc--------
Confidence 999999999998774 4422 22222345799999999999998754211111112234666666554210
Q ss_pred HhccCCCcceEEEcCCCcEEecCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCc
Q 017125 231 TAKISSAVEKSYELPDGQVITIGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFP 309 (377)
Q Consensus 231 ~~~~~~~~~~~~~lpd~~~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~ 309 (377)
.+.. ..+.++.+.|. ..+.+|.. +.+.|.+++.... ..-++.|+|+||+|++|
T Consensus 269 ----------~~~~---~~~~itr~efe~l~~~l~~~---------~~~~i~~~L~~a~----~~~Id~ViLvGGssriP 322 (595)
T PRK01433 269 ----------SFNN---DNISINKQTLEQLILPLVER---------TINIAQECLEQAG----NPNIDGVILVGGATRIP 322 (595)
T ss_pred ----------cccc---ceEEEcHHHHHHHHHHHHHH---------HHHHHHHHHhhcC----cccCcEEEEECCcccCh
Confidence 0111 13444443332 22223222 4444555554443 23368899999999999
Q ss_pred ChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 310 GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 310 g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.+.+++.+.. ++....+|+.++-.||+++|..
T Consensus 323 ~v~~~l~~~f~~--------~~~~~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 323 LIKDELYKAFKV--------DILSDIDPDKAVVWGAALQAEN 356 (595)
T ss_pred hHHHHHHHHhCC--------CceecCCchHHHHHHHHHHHHH
Confidence 888888876621 2344567899999999999875
No 33
>PRK13411 molecular chaperone DnaK; Provisional
Probab=99.79 E-value=1.4e-18 Score=175.74 Aligned_cols=215 Identities=17% Similarity=0.250 Sum_probs=138.3
Q ss_pred CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC------ceEEEEeCCCCceEEEEee--Ccee-
Q 017125 102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA- 172 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~v~--~g~~- 172 (377)
-..++|++|..++..+|+.+.+.+ +..|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+. +|..
T Consensus 133 v~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~ 211 (653)
T PRK13411 133 VTQAVITVPAYFTDAQRQATKDAG-TIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFE 211 (653)
T ss_pred cceEEEEECCCCCcHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEE
Confidence 357999999999999999888776 88999999999999999999864 3589999999999998764 3322
Q ss_pred cccceEEecccHHHHHHHHHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEE
Q 017125 173 LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242 (377)
Q Consensus 173 ~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
+..+.....+||.++++.|.+++.++ +.++..... ...++..|+.++.- ....+
T Consensus 212 V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~----------------~~~~i 275 (653)
T PRK13411 212 VKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSM----------------LTTSI 275 (653)
T ss_pred EEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCC----------------CceEE
Confidence 22223345899999999998887542 222221110 12344555554421 11112
Q ss_pred Ec----CC---Cc--EEecCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChH
Q 017125 243 EL----PD---GQ--VITIGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIA 312 (377)
Q Consensus 243 ~l----pd---~~--~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~ 312 (377)
.+ .| +. .+.++.+.|. ..+.++.. +.+.|.+++... .+...-++.|+|+||+|++|.+.
T Consensus 276 ~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a--~~~~~~id~ViLvGGssriP~v~ 344 (653)
T PRK13411 276 NLPFITADETGPKHLEMELTRAKFEELTKDLVEA---------TIEPMQQALKDA--GLKPEDIDRVILVGGSTRIPAVQ 344 (653)
T ss_pred EEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCCHHHCcEEEEECCCCCcchHH
Confidence 11 11 11 2233333321 11222221 444445555444 23445568999999999999999
Q ss_pred HHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 313 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 313 ~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++|++.+... .+....+|+.++-.||+++|..
T Consensus 345 ~~l~~~f~~~-------~~~~~~npdeaVA~GAAi~aa~ 376 (653)
T PRK13411 345 EAIQKFFGGK-------QPDRSVNPDEAVALGAAIQAGV 376 (653)
T ss_pred HHHHHHcCCc-------CcCCCCCchHHHHHHHHHHHHh
Confidence 9888766321 2333457789999999999864
No 34
>PRK13410 molecular chaperone DnaK; Provisional
Probab=99.78 E-value=2e-18 Score=174.25 Aligned_cols=297 Identities=18% Similarity=0.203 Sum_probs=176.6
Q ss_pred CCEEEeCCCCceEEeeeCCCCCC--------CCCCceeeeeCCCCccccCCCccceeccchhcc------cCcceeec--
Q 017125 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKY-- 71 (377)
Q Consensus 8 ~~viiD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~-- 71 (377)
.+|.||+||+++++++..+..|. ..+||+++...+ ...+||..|... +....+++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~KRli 73 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKD---------GELLVGQLARRQLVLNPQNTFYNLKRFI 73 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCC---------CCEEECHHHHHhhHhCccceehHHhhhh
Confidence 57999999999999988655443 345666655322 235566665432 01111111
Q ss_pred --------------ccc-----CC----------ccCC-HHHHHHHHHHhc---ccccccCCCCCcEEEeeCCCCCHHhH
Q 017125 72 --------------PIE-----HG----------IVNN-WDDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANR 118 (377)
Q Consensus 72 --------------p~~-----~g----------~i~d-~~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~~~~~~ 118 (377)
|+. +| .... .+....+++++. ...++. .-..++|++|..++..+|
T Consensus 74 G~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR 151 (668)
T PRK13410 74 GRRYDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGE--PVTGAVITVPAYFNDSQR 151 (668)
T ss_pred CCCchhhHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHH
Confidence 110 11 1111 233344444442 123332 235699999999999999
Q ss_pred HHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--Ccee-cccceEEecccHHHHHHH
Q 017125 119 EKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDA 190 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~ 190 (377)
+.+.+.+ +..|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+. +|.. +..+.....+||.++++.
T Consensus 152 ~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~ 230 (668)
T PRK13410 152 QATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKR 230 (668)
T ss_pred HHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHH
Confidence 9887777 88999999999999999999874 4689999999999998775 3322 222233468999999999
Q ss_pred HHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC----C--C-c--EEe
Q 017125 191 LMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP----D--G-Q--VIT 251 (377)
Q Consensus 191 l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp----d--~-~--~i~ 251 (377)
|.+++..+ +.++..... ...++..|..++.. ....+.+| + + . .+.
T Consensus 231 l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~----------------~~~~i~i~~~~~~~~g~~~~~~~ 294 (668)
T PRK13410 231 IVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGV----------------SVTDISLPFITATEDGPKHIETR 294 (668)
T ss_pred HHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCC----------------CceEEEEeeeecCCCCCeeEEEE
Confidence 98887542 222221100 12345555554421 11122221 1 1 1 122
Q ss_pred cCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEE
Q 017125 252 IGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIK 330 (377)
Q Consensus 252 i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~ 330 (377)
+..+.|. .++.++.. +.+.|.+++... .+.+.-++.|+|+||+|++|.+.+.+++.+. . .
T Consensus 295 itR~~FE~l~~~l~~r---------~~~~i~~~L~~a--g~~~~dId~VvLVGGssRiP~V~~~l~~~fg----~----~ 355 (668)
T PRK13410 295 LDRKQFESLCGDLLDR---------LLRPVKRALKDA--GLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP----R----E 355 (668)
T ss_pred ECHHHHHHHHHHHHHH---------HHHHHHHHHHHc--CCChhhCcEEEEECCccccHHHHHHHHHHcC----C----C
Confidence 3322221 12222221 334444444432 2334566789999999999988888876553 1 1
Q ss_pred EECCCCCccccchhhhhhhcc
Q 017125 331 VVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 331 v~~~~~~~~~~w~Gasi~a~l 351 (377)
+....+|+.++-.||+++|..
T Consensus 356 ~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 356 PNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred cccCCCCchHHHHhHHHHHHh
Confidence 233457788999999999875
No 35
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=99.78 E-value=2e-18 Score=173.58 Aligned_cols=295 Identities=19% Similarity=0.166 Sum_probs=175.8
Q ss_pred CCEEEeCCCCceEEeeeCCCCCC--------CCCCceeeeeCCCCccccCCCccceeccchhccc------Cccee----
Q 017125 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTL---- 69 (377)
Q Consensus 8 ~~viiD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~---- 69 (377)
.+|.||+||+++.+++..+..|. ..+||+++... +...+|.+|.... ....+
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~----------~~~~vG~~A~~~~~~~p~~ti~~~Krli 89 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLE----------DGIEVGYEARANAAQDPKNTISSVKRFM 89 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcC----------CCEEEcHHHHHhhHhCchhhHHHHHHHh
Confidence 56999999999999987555443 23455554422 2256676654320 00000
Q ss_pred ------------eccc--------------cCCccCCHHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHH
Q 017125 70 ------------KYPI--------------EHGIVNNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREK 120 (377)
Q Consensus 70 ------------~~p~--------------~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~ 120 (377)
.+|+ ..+.+...+....+++++.. +.++. .-..+++++|..++..+|+.
T Consensus 90 G~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a 167 (616)
T PRK05183 90 GRSLADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGG--ELDGAVITVPAYFDDAQRQA 167 (616)
T ss_pred CCCchhhhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHH
Confidence 0111 11222223444455555531 23332 23579999999999999998
Q ss_pred HHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--Ccee-cccceEEecccHHHHHHHHH
Q 017125 121 MTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALM 192 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~ 192 (377)
+.+.+ +.+|++.+.++++|.||+++++. .+.+|+|+|+++++|+.+. +|.. +..+.....+||.++++.|.
T Consensus 168 ~~~Aa-~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~ 246 (616)
T PRK05183 168 TKDAA-RLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLA 246 (616)
T ss_pred HHHHH-HHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHH
Confidence 87776 88999999999999999998764 3679999999999998875 3322 22223346899999999999
Q ss_pred HHHHHc-CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCcccc-ccccCCC
Q 017125 193 KILTER-GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFR-CPEVLFQ 265 (377)
Q Consensus 193 ~~l~~~-~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~-~~E~lf~ 265 (377)
+++.++ +.+...... ...++..|+.++.- ....+.+++-. -.++.+.|. ..+.++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~----------------~~~~i~i~~~~-~~itr~efe~l~~~l~~ 309 (616)
T PRK05183 247 DWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDA----------------DSVEVSVALWQ-GEITREQFNALIAPLVK 309 (616)
T ss_pred HHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCCC----------------ceEEEEEecCC-CeEcHHHHHHHHHHHHH
Confidence 888654 322211100 12244445444311 11223332210 012222221 1121221
Q ss_pred CccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhh
Q 017125 266 PSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGG 345 (377)
Q Consensus 266 p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Ga 345 (377)
. +.+.+.+++.... +...-++.|+|+||+|++|.+.+.|++.+.. .+....+|+.++-.||
T Consensus 310 ~---------~~~~i~~~L~~a~--~~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~npdeaVA~GA 370 (616)
T PRK05183 310 R---------TLLACRRALRDAG--VEADEVKEVVMVGGSTRVPLVREAVGEFFGR--------TPLTSIDPDKVVAIGA 370 (616)
T ss_pred H---------HHHHHHHHHHHcC--CCcccCCEEEEECCcccChHHHHHHHHHhcc--------CcCcCCCchHHHHHHH
Confidence 1 3344444444332 2233467899999999999999988876632 1223457889999999
Q ss_pred hhhhcc
Q 017125 346 SILASL 351 (377)
Q Consensus 346 si~a~l 351 (377)
+++|..
T Consensus 371 Ai~a~~ 376 (616)
T PRK05183 371 AIQADI 376 (616)
T ss_pred HHHHHH
Confidence 999874
No 36
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=99.78 E-value=3e-18 Score=172.34 Aligned_cols=218 Identities=17% Similarity=0.192 Sum_probs=140.5
Q ss_pred CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEee--Ccee-c
Q 017125 102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-L 173 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~ 173 (377)
-..+||++|..++..+|+.+.+.+ +.+|++.+.++++|+||++++|. .+.+|+|+|+++++|+.+. +|.. +
T Consensus 160 v~~aVITVPayF~~~qR~at~~Aa-~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V 238 (657)
T PTZ00186 160 VSNAVVTCPAYFNDAQRQATKDAG-TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEV 238 (657)
T ss_pred cceEEEEECCCCChHHHHHHHHHH-HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEE
Confidence 357999999999999999887766 88999999999999999999874 4789999999999999875 6643 2
Q ss_pred ccceEEecccHHHHHHHHHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEE
Q 017125 174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYE 243 (377)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
..+.....+||.++++.|.+++..+ +.++..... ...++..|..++.... ......+.
T Consensus 239 ~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~------------~~i~i~~i 306 (657)
T PTZ00186 239 KATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAME------------TEVNLPFI 306 (657)
T ss_pred EEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCc------------eEEEEeee
Confidence 2223356899999999998877542 222221100 2335566665543210 00011111
Q ss_pred cC--CC---cEEecCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHH
Q 017125 244 LP--DG---QVITIGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSK 317 (377)
Q Consensus 244 lp--d~---~~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~ 317 (377)
.. +| ..+.++.+.|. ..+.++.. +.+.+.+++.... +...-++.|+|+||+|+||.+.+.+++
T Consensus 307 ~~~~~g~~~~~~~ItR~efe~l~~~l~~r---------~~~~v~~~L~~a~--~~~~dId~VvLVGGssriP~V~~~l~~ 375 (657)
T PTZ00186 307 TANADGAQHIQMHISRSKFEGITQRLIER---------SIAPCKQCMKDAG--VELKEINDVVLVGGMTRMPKVVEEVKK 375 (657)
T ss_pred ccCCCCCcceEEEecHHHHHHHHHHHHHH---------HHHHHHHHHHHcC--CChhhCCEEEEECCcccChHHHHHHHH
Confidence 11 11 12333333332 22222222 3334444444332 234456789999999999999988887
Q ss_pred HHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+... .....+|+.++-.||+++|..
T Consensus 376 ~fg~~--------~~~~~nPdeaVA~GAAi~a~~ 401 (657)
T PTZ00186 376 FFQKD--------PFRGVNPDEAVALGAATLGGV 401 (657)
T ss_pred HhCCC--------ccccCCCchHHHHhHHHHHHH
Confidence 76421 123457789999999999874
No 37
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=99.76 E-value=1.2e-17 Score=169.22 Aligned_cols=215 Identities=16% Similarity=0.232 Sum_probs=140.7
Q ss_pred CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-------ceEEEEeCCCCceEEEEee--Ccee
Q 017125 102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGYA 172 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~v~~v~--~g~~ 172 (377)
-..++|++|..++..+|+.+.+.+ +.+|++.+.++++|.||+++++. .+.+|+|+|+++++|+.+. +|..
T Consensus 140 v~~~VItVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~ 218 (653)
T PTZ00009 140 VKDAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIF 218 (653)
T ss_pred cceeEEEeCCCCCHHHHHHHHHHH-HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeE
Confidence 357999999999999999888776 88999999999999999998863 4789999999999998764 4432
Q ss_pred -cccceEEecccHHHHHHHHHHHHHHc------CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcce
Q 017125 173 -LPHAILRLDLAGRDLTDALMKILTER------GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEK 240 (377)
Q Consensus 173 -~~~~~~~~~~GG~~i~~~l~~~l~~~------~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~ 240 (377)
+..+.....+||.++++.|.+++..+ +.++..... ...++..|+.++.. ...
T Consensus 219 ~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~----------------~~~ 282 (653)
T PTZ00009 219 EVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSS----------------TQA 282 (653)
T ss_pred EEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCC----------------ceE
Confidence 22222346899999999999887542 122211110 12345555554421 122
Q ss_pred EEEcC---CCcE--EecCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHH
Q 017125 241 SYELP---DGQV--ITIGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADR 314 (377)
Q Consensus 241 ~~~lp---d~~~--i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~r 314 (377)
.+.++ ++.. +.++.+.|. ..+.+|.. +.+.|.+++.....+ ..-++.|+|+||+|++|.+.+.
T Consensus 283 ~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~---------~~~~i~~~L~~a~~~--~~~i~~ViLvGGssriP~v~~~ 351 (653)
T PTZ00009 283 TIEIDSLFEGIDYNVTISRARFEELCGDYFRN---------TLQPVEKVLKDAGMD--KRSVHEVVLVGGSTRIPKVQSL 351 (653)
T ss_pred EEEEEeccCCceEEEEECHHHHHHHHHHHHHH---------HHHHHHHHHHHcCCC--HHHCcEEEEECCCCCChhHHHH
Confidence 23322 3322 233333332 22223322 445556666554332 3456889999999999999888
Q ss_pred HHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 315 MSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 315 l~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|++.+... .+....+|+.++-.||+++|..
T Consensus 352 i~~~f~~~-------~~~~~~npdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 352 IKDFFNGK-------EPCKSINPDEAVAYGAAVQAAI 381 (653)
T ss_pred HHHHhCCC-------CCCCCCCcchHHhhhhhhhHHH
Confidence 88766321 2233457789999999999764
No 38
>PRK11678 putative chaperone; Provisional
Probab=99.66 E-value=1.1e-15 Score=147.63 Aligned_cols=180 Identities=17% Similarity=0.189 Sum_probs=112.3
Q ss_pred CEEEeCCCCceEEeeeCCCCC--------CCCCCceeeeeCCCCc-------------------------------cccC
Q 017125 9 PLVCDNGTGMVKAGFAGDDAP--------RAVFPSIVGRPRHTGV-------------------------------MVGM 49 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~~~P--------~~~~ps~~~~~~~~~~-------------------------------~~~~ 49 (377)
.+.||+||+++-+++..+..| ...+||.++....... -...
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 489999999999999865433 3466777755321000 0011
Q ss_pred CCccceeccchhccc----Ccc----eeec-----cccCCccCCHH-HHHHHHHHhc---ccccccCCCCCcEEEeeCCC
Q 017125 50 GQKDAYVGDEAQSKR----GIL----TLKY-----PIEHGIVNNWD-DMEKIWHHTF---YNELRVAPEEHPVLLTEAPL 112 (377)
Q Consensus 50 ~~~~~~vg~~~~~~~----~~~----~~~~-----p~~~g~i~d~~-~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~ 112 (377)
+.....+|.++.+.. +.. .+++ ++..+.+...+ ....+|.++- ...++ ..-..+||+.|..
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g--~~v~~~VItvPa~ 159 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQ--AAITQAVIGRPVN 159 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhC--CCCCcEEEEECCc
Confidence 234567888876541 111 1222 22323322333 2344444442 11232 2235799999998
Q ss_pred CC-----HHhHHH--HHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCc----------
Q 017125 113 NP-----KANREK--MTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEG---------- 170 (377)
Q Consensus 113 ~~-----~~~~~~--l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g---------- 170 (377)
+. ..+|+. .+.-+.+..|++.+.++++|+||+++++. .+.+|+|+|+++++++.+.-+
T Consensus 160 F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~ 239 (450)
T PRK11678 160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRS 239 (450)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEEEecCcccccCCcc
Confidence 76 555543 24445588999999999999999999873 578999999999999887421
Q ss_pred -eecccceEEecccHHHHHHHHH
Q 017125 171 -YALPHAILRLDLAGRDLTDALM 192 (377)
Q Consensus 171 -~~~~~~~~~~~~GG~~i~~~l~ 192 (377)
.++-++ -..+||.++++.|.
T Consensus 240 ~~vla~~--G~~lGG~DfD~~L~ 260 (450)
T PRK11678 240 ASLLGHS--GQRIGGNDLDIALA 260 (450)
T ss_pred eeEEecC--CCCCChHHHHHHHH
Confidence 122111 13799999999986
No 39
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.1e-15 Score=148.57 Aligned_cols=306 Identities=19% Similarity=0.186 Sum_probs=178.8
Q ss_pred CCCCEEEeCCCCceEEeeeCCC-CCCCCCCceeeeeCCCCccccCCCccceeccchhcc------cCcceeeccccCC--
Q 017125 6 DIQPLVCDNGTGMVKAGFAGDD-APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK------RGILTLKYPIEHG-- 76 (377)
Q Consensus 6 ~~~~viiD~Gs~~~k~G~~~~~-~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~------~~~~~~~~p~~~g-- 76 (377)
-..+|.||+|++++.+++.... .|. ++++..+.+.-+++.........++|..|.+. ...+.+++.+..+
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~-vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~ 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPK-VIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCce-EecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC
Confidence 3568999999999999988755 344 33444333222222222222357788877653 1223444444322
Q ss_pred ----------ccCCH-HHHHHHHHHhc---ccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhh
Q 017125 77 ----------IVNNW-DDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 142 (377)
Q Consensus 77 ----------~i~d~-~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~ 142 (377)
..... +....++.++- ...|+ ..-..+++++|.+++..+|..+.+.. +..|++.+.++++|.|
T Consensus 83 ~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg--~~v~~~VItVPayF~d~qR~at~~A~-~iaGl~vlrlinEPtA 159 (579)
T COG0443 83 GLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLG--EKVTDAVITVPAYFNDAQRQATKDAA-RIAGLNVLRLINEPTA 159 (579)
T ss_pred CCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhC--CCcceEEEEeCCCCCHHHHHHHHHHH-HHcCCCeEEEecchHH
Confidence 11111 23334444431 12333 23468999999999999988777666 7899999999999999
Q ss_pred hhhhcCC-----ceEEEEeCCCCceEEEEeeC--cee-cccceEEecccHHHHHHHHHHHHHHc----C-CCCcChhH--
Q 017125 143 SLYASGR-----TTGIVLDSGDGVSHTVPIYE--GYA-LPHAILRLDLAGRDLTDALMKILTER----G-YSFTTTAE-- 207 (377)
Q Consensus 143 a~~~~g~-----~~~lVVDiG~~~t~v~~v~~--g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~----~-~~~~~~~~-- 207 (377)
|++++|. .+.+|+|+|+++++++.|.= |.. +........+||++++..|...+..+ + .++.....
T Consensus 160 AAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~ 239 (579)
T COG0443 160 AALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAAL 239 (579)
T ss_pred HHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHH
Confidence 9999985 47899999999999998753 422 23344567999999999998887543 2 23322111
Q ss_pred ---HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCC--ccccccccCCCCccCCCCCCChHHHHHH
Q 017125 208 ---REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGA--ERFRCPEVLFQPSMIGMESAGIHETTYN 282 (377)
Q Consensus 208 ---~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~--~~~~~~E~lf~p~~~~~~~~~l~~~I~~ 282 (377)
...++..|..++.... ....+..-++. +.+.. .|-.+ |-+ +.+++.+
T Consensus 240 ~rL~~~ae~aK~~LS~~~~--------------~~i~~~~~~~~-~~~~~~ltR~~~-E~l------------~~dll~r 291 (579)
T COG0443 240 QRLREAAEKAKIELSSATQ--------------TSINLPSIGGD-IDLLKELTRAKF-EEL------------ILDLLER 291 (579)
T ss_pred HHHHHHHHHHHHHcccccc--------------cccchhhcccc-chhhhhhhHHHH-HHH------------HHHHHHH
Confidence 1334455555443211 11111111111 11100 11111 111 2222222
Q ss_pred HHhcC-----ChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 283 SIMKC-----DVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 283 ~i~~~-----~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++..+ +..+...-++-|+++||.++||=+.+.+.+.+. . ......+|+.++-.||++.|..
T Consensus 292 ~~~~~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~----~----~~~~~inpdeava~GAa~qa~~ 357 (579)
T COG0443 292 TIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG----K----EPEKSINPDEAVALGAAIQAAV 357 (579)
T ss_pred HHHHHHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC----c----cccccCCccHHHHHHHHHHHHh
Confidence 22221 223344556789999999999955555554443 2 3344557889999999998775
No 40
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=99.64 E-value=9.5e-16 Score=155.50 Aligned_cols=215 Identities=20% Similarity=0.285 Sum_probs=134.5
Q ss_pred CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC------ceEEEEeCCCCceEEEEee--Ccee-c
Q 017125 103 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIY--EGYA-L 173 (377)
Q Consensus 103 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~v~--~g~~-~ 173 (377)
..+++++|..++..+|+.+.+.+ +.+|++.+.++++|.||+++++. .+.+|+|+|+++++++.+. +|.. +
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v 214 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEV 214 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEE
T ss_pred ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccc
Confidence 46999999999999999888877 88999999999999999988763 4789999999999998774 4533 2
Q ss_pred ccceEEecccHHHHHHHHHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEE
Q 017125 174 PHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYE 243 (377)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
........+||.++++.|.+++.++ +.+...... ...++..|+.++.. ......+.
T Consensus 215 ~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~--------------~~~~~~~~ 280 (602)
T PF00012_consen 215 LATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSN--------------DNTEITIS 280 (602)
T ss_dssp EEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTS--------------SSSEEEEE
T ss_pred cccccccccccceecceeeccccccccccccccccccccccccccccccccccccccc--------------cccccccc
Confidence 2233457899999999999988642 222221100 12344445544321 01122222
Q ss_pred c----CCCcEEec--CCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHH
Q 017125 244 L----PDGQVITI--GAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS 316 (377)
Q Consensus 244 l----pd~~~i~i--~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~ 316 (377)
+ +++..+.+ ..+.|. ..+.++.. +.+.|.+++..... ...-++.|+|+||+|++|-+.+.|+
T Consensus 281 ~~~~~~~~~~~~~~itr~~fe~l~~~~~~~---------~~~~i~~~l~~~~~--~~~~i~~V~lvGG~sr~p~v~~~l~ 349 (602)
T PF00012_consen 281 IESLYDDGEDFSITITREEFEELCEPLLER---------IIEPIEKALKDAGL--KKEDIDSVLLVGGSSRIPYVQEALK 349 (602)
T ss_dssp EEEEETTTEEEEEEEEHHHHHHHTHHHHHH---------THHHHHHHHHHTT----GGGESEEEEESGGGGSHHHHHHHH
T ss_pred cccccccccccccccccceecccccccccc---------cccccccccccccc--cccccceeEEecCcccchhhhhhhh
Confidence 1 22433333 333322 22222222 45566666655432 2444678999999999997777776
Q ss_pred HHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+.+. . .+....+|+.++-.||+++|..
T Consensus 350 ~~f~----~----~~~~~~~p~~aVA~GAa~~a~~ 376 (602)
T PF00012_consen 350 ELFG----K----KISKSVNPDEAVARGAALYAAI 376 (602)
T ss_dssp HHTT----S----EEB-SS-TTTHHHHHHHHHHHH
T ss_pred hccc----c----ccccccccccccccccccchhh
Confidence 6543 2 3445567889999999999864
No 41
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.62 E-value=3.4e-14 Score=137.07 Aligned_cols=202 Identities=18% Similarity=0.197 Sum_probs=134.9
Q ss_pred CHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHH
Q 017125 114 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~ 188 (377)
+....+.+.+ +++..|+....++.+|+|+++++.. ...+|||+|+++|+++.+.+|.++ ....+++||++++
T Consensus 164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~--~~~~i~~GG~~it 240 (420)
T PRK09472 164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR--HTKVIPYAGNVVT 240 (420)
T ss_pred chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE--EEeeeechHHHHH
Confidence 3445555666 5588999999999999999998753 358999999999999999999888 7788999999999
Q ss_pred HHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCC--C-cEEecCCccccccccCCC
Q 017125 189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPD--G-QVITIGAERFRCPEVLFQ 265 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd--~-~~i~i~~~~~~~~E~lf~ 265 (377)
+.+...+. . ..+.+|++|.+++....+.. .....+.+++ + ....++ +....+++..
T Consensus 241 ~dIa~~l~---i------~~~~AE~lK~~~g~~~~~~~----------~~~~~i~v~~~~~~~~~~i~--~~~l~~ii~~ 299 (420)
T PRK09472 241 SDIAYAFG---T------PPSDAEAIKVRHGCALGSIV----------GKDESVEVPSVGGRPPRSLQ--RQTLAEVIEP 299 (420)
T ss_pred HHHHHHhC---c------CHHHHHHHHHhcceeccccC----------CCCceeEecCCCCCCCeEEc--HHHHHHHHHH
Confidence 99987762 1 34679999998886533210 0111222221 1 001111 1111122111
Q ss_pred CccCCCCCCChHHHHHHHHhcCChhHHH-----HhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECC------
Q 017125 266 PSMIGMESAGIHETTYNSIMKCDVDIRK-----DLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP------ 334 (377)
Q Consensus 266 p~~~~~~~~~l~~~I~~~i~~~~~~~~~-----~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~------ 334 (377)
. ...|.+.|.+++..++..++. .+.++||||||+|+|||+.+.+++.+.. ++++..|
T Consensus 300 r------~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~ 367 (420)
T PRK09472 300 R------YTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHT------QVRIGAPLNITGL 367 (420)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCC------CeEEeCCcccCCC
Confidence 0 011344555555555444433 3556799999999999999999988842 3444332
Q ss_pred ----CCCccccchhhhhhhcc
Q 017125 335 ----PERKYSVWIGGSILASL 351 (377)
Q Consensus 335 ----~~~~~~~w~Gasi~a~l 351 (377)
.+|.|++-.|..+|+..
T Consensus 368 ~~~~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 368 TDYAQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred hhhcCCcHHHHHHHHHHHhhh
Confidence 36889999999998764
No 42
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.62 E-value=1.3e-14 Score=138.10 Aligned_cols=175 Identities=17% Similarity=0.232 Sum_probs=114.5
Q ss_pred CHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHH
Q 017125 114 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~ 188 (377)
++...+.+.+.+ +.+|+..+.++.+|+|+++++.. .+.+|||+|+++|+++.+.+|.+. .....++||++++
T Consensus 156 ~~~~v~~~~~~~-~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~--~~~~i~~GG~~it 232 (371)
T TIGR01174 156 SSTILRNLVKCV-ERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIR--YTKVIPIGGNHIT 232 (371)
T ss_pred EHHHHHHHHHHH-HHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEE--EEeeecchHHHHH
Confidence 556666666655 88999999999999999987642 368999999999999999999877 4577899999999
Q ss_pred HHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCC---CcEEecCCcccc-ccccCC
Q 017125 189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPD---GQVITIGAERFR-CPEVLF 264 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd---~~~i~i~~~~~~-~~E~lf 264 (377)
+.+.+.+. ...+.+|++|.+++....+. ......+.++. +....++.+.+. +.+..+
T Consensus 233 ~~i~~~l~---------~~~~~AE~lK~~~~~~~~~~----------~~~~~~i~~~~~~~~~~~~is~~~l~~ii~~~~ 293 (371)
T TIGR01174 233 KDIAKALR---------TPLEEAERIKIKYGCASIPL----------EGPDENIEIPSVGERPPRSLSRKELAEIIEARA 293 (371)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHeeEecccC----------CCCCCEEEeccCCCCCCeEEcHHHHHHHHHHHH
Confidence 99987652 13567999999998763221 00111222221 111122111110 111111
Q ss_pred CCccCCCCCCChHHHHH-HHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHh
Q 017125 265 QPSMIGMESAGIHETTY-NSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITA 321 (377)
Q Consensus 265 ~p~~~~~~~~~l~~~I~-~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~ 321 (377)
+ .+.+.|. +.+.+.+.. ..+-+.|+||||+|++||+.+++++.+..
T Consensus 294 ~---------ei~~~i~~~~L~~~~~~--~~i~~gIvLtGG~S~ipgi~~~l~~~~~~ 340 (371)
T TIGR01174 294 E---------EILEIVKQKELRKSGFK--EELNGGIVLTGGGAQLEGIVELAEKVFDN 340 (371)
T ss_pred H---------HHHHHHHHHHHHhcCCc--ccCCCEEEEeChHHcccCHHHHHHHHhCC
Confidence 1 1444443 455444322 22323499999999999999999998843
No 43
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.59 E-value=2.5e-14 Score=134.90 Aligned_cols=201 Identities=19% Similarity=0.256 Sum_probs=135.2
Q ss_pred CHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHH
Q 017125 114 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 188 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~ 188 (377)
+....+++.+.+ |+.+.....++-+|+|++.+.=. -++++||+|+++|+|+.+.+|.+. +...+|+||+++|
T Consensus 163 ~~~~~~Nl~k~v-~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~--~~~~ipvgG~~vT 239 (418)
T COG0849 163 PKNILENLEKCV-ERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALR--YTGVIPVGGDHVT 239 (418)
T ss_pred chHHHHHHHHHH-HHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEE--EEeeEeeCccHHH
Confidence 455566666666 88999999999999999987632 489999999999999999999999 7778999999999
Q ss_pred HHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCC--CcEEecCCccccccccCCCC
Q 017125 189 DALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPD--GQVITIGAERFRCPEVLFQP 266 (377)
Q Consensus 189 ~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd--~~~i~i~~~~~~~~E~lf~p 266 (377)
+.+...|. ...+.+|++|.+++....+.. .....+++|. +.. ...-.+....++.-.
T Consensus 240 ~DIa~~l~---------t~~~~AE~iK~~~g~a~~~~~----------~~~~~i~v~~vg~~~-~~~~t~~~ls~II~a- 298 (418)
T COG0849 240 KDIAKGLK---------TPFEEAERIKIKYGSALISLA----------DDEETIEVPSVGSDI-PRQVTRSELSEIIEA- 298 (418)
T ss_pred HHHHHHhC---------CCHHHHHHHHHHcCccccCcC----------CCcceEecccCCCcc-cchhhHHHHHHHHHh-
Confidence 99998882 245779999999987644321 1122222221 111 000011111111100
Q ss_pred ccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECC----------CC
Q 017125 267 SMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP----------PE 336 (377)
Q Consensus 267 ~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~----------~~ 336 (377)
...-+.+++...|++.-.. ..+..+|+||||.+++||+.+-.+.-+.. .+++..| .+
T Consensus 299 -----R~~Ei~~lV~~~l~~~g~~--~~~~~gvVlTGG~a~l~Gi~elA~~if~~------~vRig~P~~~~Gl~d~~~~ 365 (418)
T COG0849 299 -----RVEEILELVKAELRKSGLP--NHLPGGVVLTGGGAQLPGIVELAERIFGR------PVRLGVPLNIVGLTDIARN 365 (418)
T ss_pred -----hHHHHHHHHHHHHHHcCcc--ccCCCeEEEECchhcCccHHHHHHHhcCC------ceEeCCCccccCchhhccC
Confidence 0011334444455443322 56678899999999999999888776653 3444333 35
Q ss_pred Cccccchhhhhhhcc
Q 017125 337 RKYSVWIGGSILASL 351 (377)
Q Consensus 337 ~~~~~w~Gasi~a~l 351 (377)
|.|++-.|.-.|+..
T Consensus 366 p~fs~avGl~~~~~~ 380 (418)
T COG0849 366 PAFSTAVGLLLYGAL 380 (418)
T ss_pred chhhhhHHHHHHHhh
Confidence 899999999998885
No 44
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.40 E-value=1.1e-13 Score=114.24 Aligned_cols=237 Identities=18% Similarity=0.195 Sum_probs=157.7
Q ss_pred CCCCCCEEEeCCCCceEEeeeC-CCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCH-
Q 017125 4 AEDIQPLVCDNGTGMVKAGFAG-DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNW- 81 (377)
Q Consensus 4 ~~~~~~viiD~Gs~~~k~G~~~-~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~- 81 (377)
+++.-.+.+|+|+..+..-.-. |..|-.. ..+.-.-+++|.+.|+
T Consensus 26 d~sk~~vGVDLGT~~iV~~vlD~d~~Pvag---------------------------------~~~~advVRDGiVvdf~ 72 (277)
T COG4820 26 DESKLWVGVDLGTCDIVSMVLDRDGQPVAG---------------------------------CLDWADVVRDGIVVDFF 72 (277)
T ss_pred ccCceEEEeecccceEEEEEEcCCCCeEEE---------------------------------EehhhhhhccceEEehh
Confidence 3446678999999998865443 3244211 0111233467777775
Q ss_pred ---HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCC
Q 017125 82 ---DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 158 (377)
Q Consensus 82 ---~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG 158 (377)
+.++++.+.+ .++|++... +..-..||-+.....+....++ |..|....+.+++|.++++-.+.++|-|||+|
T Consensus 73 eaveiVrrlkd~l-Ek~lGi~~t--ha~taiPPGt~~~~~ri~iNVi-ESAGlevl~vlDEPTAaa~vL~l~dg~VVDiG 148 (277)
T COG4820 73 EAVEIVRRLKDTL-EKQLGIRFT--HAATAIPPGTEQGDPRISINVI-ESAGLEVLHVLDEPTAAADVLQLDDGGVVDIG 148 (277)
T ss_pred hHHHHHHHHHHHH-HHhhCeEee--eccccCCCCccCCCceEEEEee-cccCceeeeecCCchhHHHHhccCCCcEEEeC
Confidence 3344444444 577777542 3334456666555555555555 99999999999999999999999999999999
Q ss_pred CCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCc
Q 017125 159 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAV 238 (377)
Q Consensus 159 ~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~ 238 (377)
+++|-|+.+-+|.++ ....-+.||.+++..|.-. ++++ .+.+|++|+..-.-
T Consensus 149 GGTTGIsi~kkGkVi--y~ADEpTGGtHmtLvlAG~---ygi~------~EeAE~~Kr~~k~~----------------- 200 (277)
T COG4820 149 GGTTGISIVKKGKVI--YSADEPTGGTHMTLVLAGN---YGIS------LEEAEQYKRGHKKG----------------- 200 (277)
T ss_pred CCcceeEEEEcCcEE--EeccCCCCceeEEEEEecc---cCcC------HhHHHHhhhccccc-----------------
Confidence 999999999999999 4455699999887666422 2333 35577777642100
Q ss_pred ceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHH
Q 017125 239 EKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKE 318 (377)
Q Consensus 239 ~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~e 318 (377)
.|-|......++. +.+++.+-|...++. .+.|+||.+..||+++-++++
T Consensus 201 ---------------~Eif~~v~PV~eK---------MAeIv~~hie~~~i~-------dl~lvGGac~~~g~e~~Fe~~ 249 (277)
T COG4820 201 ---------------EEIFPVVKPVYEK---------MAEIVARHIEGQGIT-------DLWLVGGACMQPGVEELFEKQ 249 (277)
T ss_pred ---------------hhcccchhHHHHH---------HHHHHHHHhccCCCc-------ceEEecccccCccHHHHHHHH
Confidence 0111111222222 677888888777653 799999999999999999999
Q ss_pred HHhhCCCCceEEEECCCCCccccchh
Q 017125 319 ITALAPSSMKIKVVAPPERKYSVWIG 344 (377)
Q Consensus 319 L~~~~~~~~~v~v~~~~~~~~~~w~G 344 (377)
| ...|+.|..|.|-.=+|
T Consensus 250 l--------~l~v~~P~~p~y~TPLg 267 (277)
T COG4820 250 L--------ALQVHLPQHPLYMTPLG 267 (277)
T ss_pred h--------ccccccCCCcceechhh
Confidence 8 23555555555554444
No 45
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.9e-11 Score=109.24 Aligned_cols=214 Identities=18% Similarity=0.230 Sum_probs=126.3
Q ss_pred CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC------ceEEEEeCCCCceEEEE--eeCcee-c
Q 017125 103 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVP--IYEGYA-L 173 (377)
Q Consensus 103 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~--v~~g~~-~ 173 (377)
.+.++++|.+++..+|+..-+ +---.|...+.++++|.+|+.++|. .+-+|.|+|+++.+|+. |-+|.- +
T Consensus 173 ~~AVvTvPAYFNDAQrQATKD-AGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeV 251 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQATKD-AGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEV 251 (663)
T ss_pred cceEEecchhcchHHHhhhcc-cceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEE
Confidence 568999999999999986443 3366888999999999999999985 58899999999977764 456643 2
Q ss_pred ccceEEecccHHHHHHHHHHHHHH-----cCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCc
Q 017125 174 PHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQ 248 (377)
Q Consensus 174 ~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~ 248 (377)
........+||.+++++..+++-+ .|.++.. +...+..++++.-. .+...++......++
T Consensus 252 laTnGDThLGGEDFD~rvm~~fiklykkK~gkDv~k--dnkA~~KLrRe~Ek---------AKRaLSsqhq~riEI---- 316 (663)
T KOG0100|consen 252 LATNGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRK--DNKAVQKLRREVEK---------AKRALSSQHQVRIEI---- 316 (663)
T ss_pred EecCCCcccCccchHHHHHHHHHHHHhhhcCCccch--hhHHHHHHHHHHHH---------HHhhhccccceEEee----
Confidence 233345689999999887776532 2444432 33334444332110 000001111112221
Q ss_pred EEecCCccccccccCCCCccCCCC-----C----CChHHHHHHHHhcC--ChhHHHHhhcCceeccCCcCCcChHHHHHH
Q 017125 249 VITIGAERFRCPEVLFQPSMIGME-----S----AGIHETTYNSIMKC--DVDIRKDLYGNIVLSGGSTMFPGIADRMSK 317 (377)
Q Consensus 249 ~i~i~~~~~~~~E~lf~p~~~~~~-----~----~~l~~~I~~~i~~~--~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~ 317 (377)
|.||....++.. + ..|-..-++-+++. +.++++.-+..|||+||+++|| .+|+
T Consensus 317 ------------eS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIP----KvQq 380 (663)
T KOG0100|consen 317 ------------ESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIP----KVQQ 380 (663)
T ss_pred ------------eeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHhhcCcccccCceEEEecCcccCh----hHHH
Confidence 344443322210 0 00111111112222 5667777788999999999999 5555
Q ss_pred HHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 318 EITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 318 eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
-|.+.+.-.. ....-+|+-++-.||+.-|..
T Consensus 381 llk~fF~GKe---pskGinPdEAVAYGAAVQaGv 411 (663)
T KOG0100|consen 381 LLKDFFNGKE---PSKGINPDEAVAYGAAVQAGV 411 (663)
T ss_pred HHHHHhCCCC---ccCCCChHHHHHhhhhhhhcc
Confidence 5655553211 111225567777888776553
No 46
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.8e-11 Score=119.27 Aligned_cols=214 Identities=17% Similarity=0.221 Sum_probs=133.1
Q ss_pred CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-------ceEEEEeCCCCceEEEEee--Cce-e
Q 017125 103 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGY-A 172 (377)
Q Consensus 103 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~v~~v~--~g~-~ 172 (377)
..+++++|..++..+|+..-+.. ..+|++.+.++++|.|+++++|. .+.+|.|+|+++.+|+++. +|. .
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A~-~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~ 222 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDAA-LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFE 222 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHHH-HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhh
Confidence 45899999999999998777666 77999999999999999999873 4779999999999888774 442 2
Q ss_pred cccceEEecccHHHHHHHHHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEE
Q 017125 173 LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSY 242 (377)
Q Consensus 173 ~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
+.......++||.++++.|.+++... +.+...... ...+|+.|+.+... .....
T Consensus 223 vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~----------------~~~~i 286 (620)
T KOG0101|consen 223 VKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSS----------------TQASI 286 (620)
T ss_pred hhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhccc----------------cccee
Confidence 23334467999999999998887421 212211100 11233334333211 11111
Q ss_pred E---cCCCcEEecCCccccc---cccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHH
Q 017125 243 E---LPDGQVITIGAERFRC---PEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS 316 (377)
Q Consensus 243 ~---lpd~~~i~i~~~~~~~---~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~ 316 (377)
. |-+|..+...-.|-++ +.-||.. ..+.+..+++..- +-+..+..||||||++.+|.+..-++
T Consensus 287 ~vdsL~~g~d~~~~itrarfe~l~~dlf~~---------~~~~v~~~L~da~--~dk~~i~~vvlVGGstriPk~~~ll~ 355 (620)
T KOG0101|consen 287 EIDSLYEGIDFYTSITRARFEELNADLFRS---------TLEPVEKALKDAK--LDKSDIDEVVLVGGSTRIPKVQKLLE 355 (620)
T ss_pred ccchhhccccccceeehhhhhhhhhHHHHH---------HHHHHHHHHHhhc--cCccCCceeEEecCcccchHHHHHHH
Confidence 1 2233333222222222 2234333 3344444554332 33444678999999999996665555
Q ss_pred HHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.-+.. -++..+-+|+.++-.||++.|..
T Consensus 356 d~f~~-------k~~~~sinpDeavA~GAavqaa~ 383 (620)
T KOG0101|consen 356 DFFNG-------KELNKSINPDEAVAYGAAVQAAI 383 (620)
T ss_pred HHhcc-------cccccCCCHHHHHHhhHHHHhhh
Confidence 44422 12334457899999999999886
No 47
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.34 E-value=8.2e-11 Score=111.32 Aligned_cols=155 Identities=16% Similarity=0.177 Sum_probs=108.6
Q ss_pred CHHhHHHHHhhhcccCCCCeEEEechhhhhhhhc-----------CCc-eEEEEeCCCCceEEEEeeCceecccceEEec
Q 017125 114 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS-----------GRT-TGIVLDSGDGVSHTVPIYEGYALPHAILRLD 181 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~-----------g~~-~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~ 181 (377)
++...+.+.+.+ +..|+.-..+..+++|.+-+. ... +.++||+|+++|+++.+.+|.++ ..+.++
T Consensus 141 ~~~~v~~~~~~~-~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~--~~r~i~ 217 (348)
T TIGR01175 141 RKEVVDSRLHAL-KLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML--FTREVP 217 (348)
T ss_pred cHHHHHHHHHHH-HHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE--EEEEee
Confidence 677778888775 889999888888888764332 112 48999999999999999999998 778899
Q ss_pred ccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCccccccc
Q 017125 182 LAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPE 261 (377)
Q Consensus 182 ~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E 261 (377)
+||.++++.+.+.+ +. +.+.++++|...++.. +...+ ..+
T Consensus 218 ~G~~~i~~~i~~~~---~~------~~~~Ae~~k~~~~~~~-~~~~~------------------------------~~~ 257 (348)
T TIGR01175 218 FGTRQLTSELSRAY---GL------NPEEAGEAKQQGGLPL-LYDPE------------------------------VLR 257 (348)
T ss_pred chHHHHHHHHHHHc---CC------CHHHHHHHHhcCCCCC-chhHH------------------------------HHH
Confidence 99999999998665 22 3456888888765321 10000 000
Q ss_pred cCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHH
Q 017125 262 VLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIT 320 (377)
Q Consensus 262 ~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~ 320 (377)
..++ .+..-|.++++-+-.......++.|+||||++.++||.+.|+++|.
T Consensus 258 ~~~~---------~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 258 RFKG---------ELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred HHHH---------HHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 0111 1445555566444222223346889999999999999999999995
No 48
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.27 E-value=2e-10 Score=107.85 Aligned_cols=185 Identities=14% Similarity=0.151 Sum_probs=108.1
Q ss_pred CCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCC-ccc------------cCCCcc---ceeccchhcccCcceeec
Q 017125 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTG-VMV------------GMGQKD---AYVGDEAQSKRGILTLKY 71 (377)
Q Consensus 8 ~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~-~~~------------~~~~~~---~~vg~~~~~~~~~~~~~~ 71 (377)
.++.||+|-.+||+-.... ...+|+.++...... .+. ..++.. +++|+++...... ...
T Consensus 3 ~v~~iDiG~g~tK~~~~~~---~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~~--~~~ 77 (344)
T PRK13917 3 YVMALDFGNGFVKGKINDE---KFVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTNT--GKD 77 (344)
T ss_pred eEEEEeccCCeEEEEecCC---CEEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhcccc--cCC
Confidence 4899999999999866422 234566654332111 111 112233 7778775332110 001
Q ss_pred ccc-CCccCCHHHHHHHHHHhcccccccCC--CCCcEEE--eeCCCCCHHh-HHHHHhhhccc-----------CCCCeE
Q 017125 72 PIE-HGIVNNWDDMEKIWHHTFYNELRVAP--EEHPVLL--TEAPLNPKAN-REKMTQIMFET-----------FNTPAM 134 (377)
Q Consensus 72 p~~-~g~i~d~~~~~~~~~~~~~~~L~~~~--~~~~vvl--~~~~~~~~~~-~~~l~~~lfe~-----------~~~~~v 134 (377)
+.. ++.. .-+..+.++..++...+.... +...++| -.|...-... ++.+.+.+-.. ..+..|
T Consensus 78 ~~~~~~~y-~~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V 156 (344)
T PRK13917 78 TYSTNDRY-DIKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGV 156 (344)
T ss_pred cccccccc-cchhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEE
Confidence 111 1111 123566666665433222211 1233333 4554442222 24454443221 345678
Q ss_pred EEechhhhhhhhcCC-------------ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHc
Q 017125 135 YVAIQAVLSLYASGR-------------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 198 (377)
Q Consensus 135 ~~~~~~~~a~~~~g~-------------~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~ 198 (377)
.++|+|+.|.+.... ...+|||+|+.+|+++.+.++.+.......++.|..++.+.+.+.+..+
T Consensus 157 ~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 233 (344)
T PRK13917 157 KVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKK 233 (344)
T ss_pred EEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhh
Confidence 999999998765422 2569999999999999999999988777789999999999999998543
No 49
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.24 E-value=3e-10 Score=106.88 Aligned_cols=193 Identities=20% Similarity=0.307 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHhcccccccCCCC-----------------CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhh
Q 017125 80 NWDDMEKIWHHTFYNELRVAPEE-----------------HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 142 (377)
Q Consensus 80 d~~~~~~~~~~~~~~~L~~~~~~-----------------~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~ 142 (377)
+.+.++..+.+=..+++..+.++ ..|+++. .++...+..++++ +.+|..-..+-.++.|
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~A---a~k~~v~~~~~~~-~~aGL~~~~vDv~~~A 161 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVA---APKEIVESYVELF-EEAGLKPVAVDVEAFA 161 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEE---EEHHHHHHHHHHH-HHTT-EEEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEE---EcHHHHHHHHHHH-HHcCCceEEEeehHHH
Confidence 44667777777666666654332 2344432 2567777777666 7788886655544444
Q ss_pred --hhhhc---------CCceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHH
Q 017125 143 --SLYAS---------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIV 211 (377)
Q Consensus 143 --a~~~~---------g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~ 211 (377)
-++.. ...+.++||+|++.|.++.+.+|.++ ..+.+++||+++++.+.+.+ ..+.+.+
T Consensus 162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~--f~R~i~~G~~~l~~~i~~~~---------~i~~~~A 230 (340)
T PF11104_consen 162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPI--FSRSIPIGGNDLTEAIAREL---------GIDFEEA 230 (340)
T ss_dssp GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEE--EEEEES-SHHHHHHHHHHHT---------T--HHHH
T ss_pred HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEE--EEEEEeeCHHHHHHHHHHhc---------CCCHHHH
Confidence 23322 12356999999999999999999998 77889999999999998776 2244567
Q ss_pred HHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhH
Q 017125 212 RDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDI 291 (377)
Q Consensus 212 ~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~ 291 (377)
+.+|..... ..+...+ +.+.+++. |..-|.++++-+-...
T Consensus 231 e~~k~~~~l-~~~~~~~------------------------------~l~~~~~~---------l~~EI~rsl~~y~~~~ 270 (340)
T PF11104_consen 231 EELKRSGGL-PEEYDQD------------------------------ALRPFLEE---------LAREIRRSLDFYQSQS 270 (340)
T ss_dssp HHHHHHT-------HHH------------------------------HHHHHHHH---------HHHHHHHHHHHHHHH-
T ss_pred HHHHhcCCC-CcchHHH------------------------------HHHHHHHH---------HHHHHHHHHHHHHhcC
Confidence 777776432 1111000 00011111 5666677776554444
Q ss_pred HHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEEC
Q 017125 292 RKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA 333 (377)
Q Consensus 292 ~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~ 333 (377)
...-++.|+||||+|+++||.+.|+++| +..+.+..
T Consensus 271 ~~~~i~~I~L~Ggga~l~gL~~~l~~~l------~~~v~~~~ 306 (340)
T PF11104_consen 271 GGESIERIYLSGGGARLPGLAEYLSEEL------GIPVEVIN 306 (340)
T ss_dssp -----SEEEEESGGGGSTTHHHHHHHHH------TSEEEE--
T ss_pred CCCCCCEEEEECCccchhhHHHHHHHHH------CCceEEcC
Confidence 5566789999999999999999999999 44555554
No 50
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.22 E-value=3.6e-10 Score=105.35 Aligned_cols=186 Identities=12% Similarity=0.068 Sum_probs=116.9
Q ss_pred EeCCCCceEEeeeC-CCCC-CCCCCceeeeeCCCC------------ccccCCCccceeccchhcccCcceeeccccCCc
Q 017125 12 CDNGTGMVKAGFAG-DDAP-RAVFPSIVGRPRHTG------------VMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGI 77 (377)
Q Consensus 12 iD~Gs~~~k~G~~~-~~~P-~~~~ps~~~~~~~~~------------~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~ 77 (377)
||+|-.++|+-+.. +..+ ...+||.++...... .....++..++||+.+..... ....+.+.+..
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~-~~~~~~~~~~~ 80 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAAD-TNRARQLHDEY 80 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhccc-Cccceeccccc
Confidence 89999999987653 2232 356787764432211 111134566788877633221 01111222222
Q ss_pred cCCHHHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhccc--------CCCCeEEEechhhhhhhhc--
Q 017125 78 VNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET--------FNTPAMYVAIQAVLSLYAS-- 147 (377)
Q Consensus 78 i~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~--------~~~~~v~~~~~~~~a~~~~-- 147 (377)
..+ +....++.+++.. .+. .....+++-.|...-...++.+.+.+-.. ..+..|.++|+|+.|.+..
T Consensus 81 ~~~-~~~~~L~~~Al~~-~~~-~~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~ 157 (320)
T TIGR03739 81 TET-PEYMALLRGALAL-SKV-REIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVA 157 (320)
T ss_pred cCC-HHHHHHHHHHHHH-hcC-CCCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHh
Confidence 222 3455555555422 222 12224666677776666778777776432 4677899999999886643
Q ss_pred -------CCceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHc-CCC
Q 017125 148 -------GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER-GYS 201 (377)
Q Consensus 148 -------g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~-~~~ 201 (377)
.....+|||+|+.+|+++.+.++.+......+.+.|...+.+.+.+.+.++ +.+
T Consensus 158 ~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~~g~~ 219 (320)
T TIGR03739 158 QHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKDIGTP 219 (320)
T ss_pred cCCCcccCcCcEEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhhcCCC
Confidence 234679999999999999888888887777788999999999999998754 443
No 51
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=7e-10 Score=108.18 Aligned_cols=95 Identities=16% Similarity=0.159 Sum_probs=77.7
Q ss_pred CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC----------ceEEEEeCCCCceEEEEeeCce
Q 017125 102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR----------TTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~----------~~~lVVDiG~~~t~v~~v~~g~ 171 (377)
-..+++++|+++.+.+|..+++.+ +-+|...++++++..++|+.+|. +.-++.|+|+++|.++.|.--.
T Consensus 158 Ikd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~ 236 (902)
T KOG0104|consen 158 IKDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQL 236 (902)
T ss_pred hhheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEe
Confidence 356999999999999999999988 88999999999999999999984 4679999999999999885322
Q ss_pred eccc-------------ceEEecccHHHHHHHHHHHHHH
Q 017125 172 ALPH-------------AILRLDLAGRDLTDALMKILTE 197 (377)
Q Consensus 172 ~~~~-------------~~~~~~~GG~~i~~~l~~~l~~ 197 (377)
+-.. ..-...+||..++.+|..+|..
T Consensus 237 v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 237 VKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred eccccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 1111 1113378999999999999864
No 52
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.99 E-value=2e-08 Score=89.92 Aligned_cols=148 Identities=17% Similarity=0.208 Sum_probs=96.5
Q ss_pred HhhhcccCCCCeEEEechhhhh--hhh-----cCC----ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHH
Q 017125 122 TQIMFETFNTPAMYVAIQAVLS--LYA-----SGR----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA 190 (377)
Q Consensus 122 ~~~lfe~~~~~~v~~~~~~~~a--~~~-----~g~----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~ 190 (377)
..-+|+..|.....+--+..+. +|. .+. ...+|+|||++.|.++.+.+|+++ ..+..++||+.+++.
T Consensus 154 ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~l--y~r~~~~g~~Qlt~~ 231 (354)
T COG4972 154 RIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKIL--YTREVPVGTDQLTQE 231 (354)
T ss_pred HHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeee--eEeeccCcHHHHHHH
Confidence 3445577777655554444433 222 111 235699999999999999999999 778999999999999
Q ss_pred HHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCC
Q 017125 191 LMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIG 270 (377)
Q Consensus 191 l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~ 270 (377)
+.+... .+...++++|...... .++..+.-.. +
T Consensus 232 i~r~~~---------L~~~~a~~~k~~~~~P-~~y~~~vl~~------------------------------f------- 264 (354)
T COG4972 232 IQRAYS---------LTEEKAEEIKRGGTLP-TDYGSEVLRP------------------------------F------- 264 (354)
T ss_pred HHHHhC---------CChhHhHHHHhCCCCC-CchhHHHHHH------------------------------H-------
Confidence 987761 1334577777765532 2332211000 0
Q ss_pred CCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHH
Q 017125 271 MESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIT 320 (377)
Q Consensus 271 ~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~ 320 (377)
...|.+-|.++|+-+-.---..-+..|+|+||++.+.|+.+.+++.|.
T Consensus 265 --~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~ 312 (354)
T COG4972 265 --LGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLS 312 (354)
T ss_pred --HHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhC
Confidence 011566666777654211122335689999999999999999999984
No 53
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=4.2e-08 Score=95.53 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=78.1
Q ss_pred CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC------------ceEEEEeCCCCceEEEEe--
Q 017125 102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVSHTVPI-- 167 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~~~lVVDiG~~~t~v~~v-- 167 (377)
-..++|.+|.++...+|..+++.+ ...|+..+.++++..|+++++|. .+...||+||+.++++..
T Consensus 137 v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF 215 (727)
T KOG0103|consen 137 VSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAF 215 (727)
T ss_pred CCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeee
Confidence 457999999999999999999999 88999999999999999999984 358999999999887755
Q ss_pred eCceec-ccceEEecccHHHHHHHHHHHHHH
Q 017125 168 YEGYAL-PHAILRLDLAGRDLTDALMKILTE 197 (377)
Q Consensus 168 ~~g~~~-~~~~~~~~~GG~~i~~~l~~~l~~ 197 (377)
-.|..- ..+.-.-.+||+++++.|.+++..
T Consensus 216 ~kG~lkvl~ta~D~~lGgr~fDe~L~~hfa~ 246 (727)
T KOG0103|consen 216 TKGKLKVLATAFDRKLGGRDFDEALIDHFAK 246 (727)
T ss_pred ccCcceeeeeecccccccchHHHHHHHHHHH
Confidence 344322 222334589999999999998864
No 54
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.73 E-value=4.4e-07 Score=86.17 Aligned_cols=161 Identities=16% Similarity=0.177 Sum_probs=99.4
Q ss_pred CCCCCEEEeCCCCceEEeeeC----CCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCC
Q 017125 5 EDIQPLVCDNGTGMVKAGFAG----DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNN 80 (377)
Q Consensus 5 ~~~~~viiD~Gs~~~k~G~~~----~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d 80 (377)
++-..|.||+||++|.+=|+- +..+....|.+.- +..+..-+. .-...|+......|
T Consensus 4 ~~i~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I-----------------~dkev~yrS--~i~fTPl~~~~~ID 64 (475)
T PRK10719 4 EELLSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEI-----------------IDKEIIYRS--PIYFTPLLKQGEID 64 (475)
T ss_pred cEEEEEEEeccCceEEEEEEEEEEecccccccCceEEE-----------------eeeEEEEec--CceecCCCCCcccc
Confidence 556779999999999998873 2223333332211 111111111 12456888888889
Q ss_pred HHHHHHHHHHhcccccccCCC--CCcEEEeeCCCCCHHhHHHHHhhhcc--------cCC--CCeEEEechhhhhhhhc-
Q 017125 81 WDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFE--------TFN--TPAMYVAIQAVLSLYAS- 147 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~L~~~~~--~~~vvl~~~~~~~~~~~~~l~~~lfe--------~~~--~~~v~~~~~~~~a~~~~- 147 (377)
-++++++++.-| +.-++.++ +..+.++.-......+.++.++.+-. ..| +.++ -++++++.+.
T Consensus 65 ~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~i---va~~ASg~avL 140 (475)
T PRK10719 65 EAAIKELIEEEY-QKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESI---IAGKGAGAQTL 140 (475)
T ss_pred HHHHHHHHHHHH-HHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHh---hhHHHhhHHHh
Confidence 999999999987 77777765 34455554444444444444432110 011 1122 1133333222
Q ss_pred ---CCceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHH
Q 017125 148 ---GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA 190 (377)
Q Consensus 148 ---g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~ 190 (377)
.....++||||+++|+++.+.+|.++ +...+++||++++..
T Consensus 141 seEke~gVa~IDIGgGTT~iaVf~~G~l~--~T~~l~vGG~~IT~D 184 (475)
T PRK10719 141 SEERNTRVLNIDIGGGTANYALFDAGKVI--DTACLNVGGRLIETD 184 (475)
T ss_pred hhhccCceEEEEeCCCceEEEEEECCEEE--EEEEEecccceEEEC
Confidence 12478999999999999999999998 777899999988765
No 55
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.2e-06 Score=81.50 Aligned_cols=186 Identities=18% Similarity=0.270 Sum_probs=115.1
Q ss_pred CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCc-----eEEEEeCCCCceEEEE--eeCceec-c
Q 017125 103 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTVP--IYEGYAL-P 174 (377)
Q Consensus 103 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----~~lVVDiG~~~t~v~~--v~~g~~~-~ 174 (377)
...++++|.+++..+|+..-... .-+|...+..+++|.+|++++|.. .-.|.|+|+++.+|+. |.+|.-- .
T Consensus 161 ~~avvtvpAyfndsqRqaTkdag-~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevk 239 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQATKDAG-QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVK 239 (640)
T ss_pred hheeeccHHHHhHHHHHHhHhhh-hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEE
Confidence 46889999999999988655444 889999999999999999999864 4689999999977764 4566432 2
Q ss_pred cceEEecccHHHHHHHHHHHHHH-----cCCCCcChhHHHHHHHHHH-------hcceeccCHHHHHHHhccCCCcceEE
Q 017125 175 HAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAEREIVRDMKE-------KLAYIALDYEQELETAKISSAVEKSY 242 (377)
Q Consensus 175 ~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~~~~~~~ik~-------~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (377)
........||.+++..+..++-. .++++. .+.....++++ ++.... ......+|
T Consensus 240 sTngdtflggedfd~~~~~~~v~~fk~~~gidl~--kd~~a~qrl~eaaEkaKielSs~~------------~tei~lp~ 305 (640)
T KOG0102|consen 240 STNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLT--KDRMALQRLREAAEKAKIELSSRQ------------QTEINLPF 305 (640)
T ss_pred eccCccccChhHHHHHHHHHHHHhhhcccCcchh--hhHHHHHHHHHHHHhhhhhhhhcc------------cceeccce
Confidence 23345688999999999887742 133322 22233333332 222110 01112233
Q ss_pred EcCCC---cEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHH-----HhhcCceeccCCcCCcChHHH
Q 017125 243 ELPDG---QVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRK-----DLYGNIVLSGGSTMFPGIADR 314 (377)
Q Consensus 243 ~lpd~---~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~-----~l~~nIvl~GG~s~i~g~~~r 314 (377)
...|. +-+.+...|-.+.|+ +..+|.+.|.-|-.++|. .-++.|+|+||.+.+|-..+.
T Consensus 306 iTada~gpkh~~i~~tr~efe~~-------------v~~lI~Rti~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~ 372 (640)
T KOG0102|consen 306 ITADASGPKHLNIELTRGEFEEL-------------VPSLIARTIEPCKKALRDASLSSSDINEVILVGGMTRMPKVQST 372 (640)
T ss_pred eeccCCCCeeEEEeecHHHHHHh-------------hHHHHHhhhhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHH
Confidence 33332 333333333333222 445666666555444443 445689999999999955554
Q ss_pred HH
Q 017125 315 MS 316 (377)
Q Consensus 315 l~ 316 (377)
++
T Consensus 373 V~ 374 (640)
T KOG0102|consen 373 VK 374 (640)
T ss_pred HH
Confidence 44
No 56
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.49 E-value=4e-07 Score=84.82 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=50.6
Q ss_pred cCCCCeEEEechhhhhhhhc-----CCceEEEEeCCCCceEEEEeeCceecc-cceEEecccHHHHHHHHHHHHHH
Q 017125 128 TFNTPAMYVAIQAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALP-HAILRLDLAGRDLTDALMKILTE 197 (377)
Q Consensus 128 ~~~~~~v~~~~~~~~a~~~~-----g~~~~lVVDiG~~~t~v~~v~~g~~~~-~~~~~~~~GG~~i~~~l~~~l~~ 197 (377)
.+.+..|.+.|++++|.+.. .....+|||||+.+|+++.|.++.... .+....++|-..+.+.+.+.|..
T Consensus 137 ~i~I~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 137 TITIKDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp --EEEEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred eEEEeeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHH
Confidence 34467899999999998864 235789999999999999998765443 33345688999999999988865
No 57
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.44 E-value=9.6e-06 Score=72.86 Aligned_cols=43 Identities=30% Similarity=0.611 Sum_probs=35.9
Q ss_pred CceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhh
Q 017125 298 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 348 (377)
Q Consensus 298 nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 348 (377)
.|+++||.++.+++.+++.+.|. ..+..++++.+..-+||+++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~lg--------~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKLG--------MKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CEEEECccccCHHHHHHHHHHhC--------CcEEcCCCccHHHHHHHHhC
Confidence 79999999999999999998882 35666777888888998764
No 58
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.15 E-value=8.7e-05 Score=68.28 Aligned_cols=45 Identities=27% Similarity=0.436 Sum_probs=40.6
Q ss_pred ceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 299 IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 299 Ivl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
||++||++...++.+.+.+.| ..+|+.||++++.--.||+++|+-
T Consensus 346 iv~~GGva~n~av~~ale~~l--------g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL--------GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh--------CCeeecCCccchhhHHHHHHHHhh
Confidence 999999999999999999888 357888999999999999998864
No 59
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.11 E-value=3.1e-05 Score=69.96 Aligned_cols=48 Identities=17% Similarity=0.375 Sum_probs=39.6
Q ss_pred hhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEE-CCCCCccccchhhhhhhc
Q 017125 295 LYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVV-APPERKYSVWIGGSILAS 350 (377)
Q Consensus 295 l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~-~~~~~~~~~w~Gasi~a~ 350 (377)
+-+.|+++||.+.-+|+.+.|++.|.. ++. .+++|++..-+||+++|.
T Consensus 239 i~~~v~~~GGva~N~~l~~al~~~Lg~--------~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 239 VEEGFFITGGIAKNPGVVKRIERILGI--------KAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCEEEECcccccHHHHHHHHHHhCC--------CceeCCCCccHHHHHHHHHHHH
Confidence 446799999999999999999998832 333 366789999999999984
No 60
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=97.94 E-value=0.00015 Score=64.74 Aligned_cols=50 Identities=20% Similarity=0.446 Sum_probs=41.0
Q ss_pred cCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhh
Q 017125 297 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 297 ~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
.+|+++||.++-+++.+.|+++|... ...+.+..+++|++..-+||+++|
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 46999999999999999999999532 124556667889999999999875
No 61
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=97.89 E-value=0.00016 Score=68.00 Aligned_cols=46 Identities=28% Similarity=0.570 Sum_probs=40.1
Q ss_pred cCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017125 297 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 297 ~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
+.|+++||.++.+|+.+.|++.|. .++..|++|++..-+||+++|+
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg--------~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLG--------IEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhC--------CcEEECCcccHHHHHHHHHHhc
Confidence 559999999999999999999883 3566688999999999999985
No 62
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.69 E-value=0.00017 Score=68.81 Aligned_cols=174 Identities=17% Similarity=0.243 Sum_probs=111.5
Q ss_pred CCCEEEeCCCCceEEeeeC----CCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHH
Q 017125 7 IQPLVCDNGTGMVKAGFAG----DDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWD 82 (377)
Q Consensus 7 ~~~viiD~Gs~~~k~G~~~----~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~ 82 (377)
-..|.||+||+||.+=|+- +..+.+..|.+.- ++.+..-+. .-...|+.+....|-+
T Consensus 3 i~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I-----------------~dkeViYrS--~I~fTPl~~~~~ID~~ 63 (473)
T PF06277_consen 3 ILSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEI-----------------VDKEVIYRS--PIYFTPLLSQTEIDAE 63 (473)
T ss_pred eEEEEEeecCCceeEEEEEeEEEeccCCCccceEEE-----------------eccEEEecC--CccccCCCCCCccCHH
Confidence 3468999999999988874 2223333333211 111111111 1234688888888999
Q ss_pred HHHHHHHHhcccccccCCC--CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEE---echhhhhhhhcCC--------
Q 017125 83 DMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYV---AIQAVLSLYASGR-------- 149 (377)
Q Consensus 83 ~~~~~~~~~~~~~L~~~~~--~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~---~~~~~~a~~~~g~-------- 149 (377)
+++++++.-| +.-++.++ +...|++.---..+++-+.+.+.|-+.+|==.|.- --+++.|..++|.
T Consensus 64 al~~iv~~eY-~~Agi~p~~I~TGAVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~ 142 (473)
T PF06277_consen 64 ALKEIVEEEY-RKAGITPEDIDTGAVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHH 142 (473)
T ss_pred HHHHHHHHHH-HHcCCCHHHCccccEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhC
Confidence 9999999997 77788776 34444444444455666666666655444211111 2366777777662
Q ss_pred ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHH-----------HHHHHHHHHHcCCCC
Q 017125 150 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL-----------TDALMKILTERGYSF 202 (377)
Q Consensus 150 ~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i-----------~~~l~~~l~~~~~~~ 202 (377)
...+=+|||+++|.++.+.+|.++ ...-+++||+.+ ...+..++.+.+.++
T Consensus 143 ~~V~NiDIGGGTtN~avf~~G~v~--~T~cl~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 143 TVVANIDIGGGTTNIAVFDNGEVI--DTACLDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred CeEEEEEeCCCceeEEEEECCEEE--EEEEEeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 456678999999999999999999 666789999743 445556666655543
No 63
>PRK13317 pantothenate kinase; Provisional
Probab=97.22 E-value=0.018 Score=52.45 Aligned_cols=52 Identities=23% Similarity=0.168 Sum_probs=41.9
Q ss_pred HhhcCceecc-CCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017125 294 DLYGNIVLSG-GSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 294 ~l~~nIvl~G-G~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
.-.++|+++| |.++.|++.++|.+.++-. ..++.-+++|++..-+||++++.
T Consensus 221 ~~~~~Ivf~G~gla~n~~l~~~l~~~l~~~-----~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 221 KNIENIVYIGSTLTNNPLLQEIIESYTKLR-----NCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred cCCCeEEEECcccccCHHHHHHHHHHHhcC-----CceEEecCCCchhHHHHHHHHhh
Confidence 3447999999 7999999999999877421 24666688899999999998875
No 64
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=96.23 E-value=0.049 Score=42.89 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=41.3
Q ss_pred EEEeCCCCceEEEEeeCceecccceEEeccc--------HHHHH--HHHHHHHHHcCCCCcChhHHHHHHHH-HHhccee
Q 017125 153 IVLDSGDGVSHTVPIYEGYALPHAILRLDLA--------GRDLT--DALMKILTERGYSFTTTAEREIVRDM-KEKLAYI 221 (377)
Q Consensus 153 lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~G--------G~~i~--~~l~~~l~~~~~~~~~~~~~~~~~~i-k~~~~~v 221 (377)
++||+|+++|.++...++... ....+++| |.+++ +.+.+.++. ..+.+|++ |.++..+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~--~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~---------a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDG--YIRVLGVGEVPSKGIKGGHITDIEDISKAIKI---------AIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEE--EEEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCC--cEEEEEEecccccccCCCEEEEHHHHHHHHHH---------HHHHHHHHhCCeeeEE
Confidence 689999999999999988776 57788999 99999 888877732 34557777 7665544
No 65
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=96.11 E-value=0.015 Score=54.71 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=42.3
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhh
Q 017125 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
-..|+++||.++-+|+.+.|++.|....+ ..+|+.+++|++..-+||+++|
T Consensus 382 ~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 382 TDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 46899999999999999999999965432 2356668899999999999875
No 66
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=96.03 E-value=0.035 Score=55.08 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=55.8
Q ss_pred EEEeeCCCCCHHhHHHHHhhhcccCCCCe--EEEechhhhhhhhc-----CCceEEEEeCCCCceEEEEeeCceecccce
Q 017125 105 VLLTEAPLNPKANREKMTQIMFETFNTPA--MYVAIQAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALPHAI 177 (377)
Q Consensus 105 vvl~~~~~~~~~~~~~l~~~lfe~~~~~~--v~~~~~~~~a~~~~-----g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~ 177 (377)
.++.....-.-.+++.+++.+.+..|++. +.=-.++-+..++. ...+++|+|||+++|.++.+.+|.+. ..
T Consensus 80 ~~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~ 157 (496)
T PRK11031 80 RVVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT--SL 157 (496)
T ss_pred EEEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee--ee
Confidence 34444445455667778887877777762 22222333322211 12358999999999999999999877 66
Q ss_pred EEecccHHHHHHHH
Q 017125 178 LRLDLAGRDLTDAL 191 (377)
Q Consensus 178 ~~~~~GG~~i~~~l 191 (377)
..+|+|.-.+++.+
T Consensus 158 ~Sl~lG~vrl~e~f 171 (496)
T PRK11031 158 FSLSMGCVTWLERY 171 (496)
T ss_pred eEEeccchHHHHHh
Confidence 78999987766443
No 67
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=96.02 E-value=0.028 Score=51.95 Aligned_cols=84 Identities=19% Similarity=0.165 Sum_probs=56.2
Q ss_pred EEeeCCCCCHHhHHHHHhhhcccCCCCeEEEec---hhhhhhhh----cCCceEEEEeCCCCceEEEEeeCceecccceE
Q 017125 106 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAI---QAVLSLYA----SGRTTGIVLDSGDGVSHTVPIYEGYALPHAIL 178 (377)
Q Consensus 106 vl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~----~g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~ 178 (377)
++....+-.-.+++.+++.+.+..|++ +.++. ++.+...+ ....+++++|+|+++|.++.+.++.+. ...
T Consensus 75 ~vaTsa~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~--~~~ 151 (300)
T TIGR03706 75 AVATAALRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG--EGV 151 (300)
T ss_pred EEEcHHHHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe--EEE
Confidence 444444445566777888887777764 33444 33332222 122457999999999999999888877 667
Q ss_pred EecccHHHHHHHHH
Q 017125 179 RLDLAGRDLTDALM 192 (377)
Q Consensus 179 ~~~~GG~~i~~~l~ 192 (377)
.+|+|.-.+++.+.
T Consensus 152 Sl~lG~vrl~e~f~ 165 (300)
T TIGR03706 152 SLPLGCVRLTEQFF 165 (300)
T ss_pred EEccceEEhHHhhC
Confidence 89999877776653
No 68
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=95.94 E-value=0.014 Score=53.02 Aligned_cols=48 Identities=25% Similarity=0.443 Sum_probs=34.9
Q ss_pred ceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhh
Q 017125 299 IVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 299 Ivl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
|+++||..+-+.+.+.|++.|.+..+.. .+..+.+|.+.+..||.++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 9999999988777777766665554442 23344567899999999986
No 69
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=95.88 E-value=0.013 Score=52.04 Aligned_cols=95 Identities=21% Similarity=0.281 Sum_probs=64.2
Q ss_pred CCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCc-----eEEEEeCCCCceEEEEeeCceecccceEEecccHHHH
Q 017125 113 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 187 (377)
Q Consensus 113 ~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-----~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i 187 (377)
..+..-+.+++.+-+++|++.-.---++-+|..+.-.+ .-.|+|+|+++|+.+.|-....+ ....+.=.|+.+
T Consensus 92 t~~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v--~~iHlAGAG~mV 169 (332)
T PF08841_consen 92 TDKLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEV--TAIHLAGAGNMV 169 (332)
T ss_dssp -SS-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-E--EEEEEE-SHHHH
T ss_pred cccccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcE--EEEEecCCchhh
Confidence 34444466777777889999887888888887766432 35789999999999888654444 233456678999
Q ss_pred HHHHHHHHHHcCCCCcChhHHHHHHHHHHh
Q 017125 188 TDALMKILTERGYSFTTTAEREIVRDMKEK 217 (377)
Q Consensus 188 ~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~ 217 (377)
|..+..-| |. .+.+++|+||+.
T Consensus 170 TmlI~sEL---Gl-----~d~~lAE~IKky 191 (332)
T PF08841_consen 170 TMLINSEL---GL-----EDRELAEDIKKY 191 (332)
T ss_dssp HHHHHHHC---T------S-HHHHHHHHHS
T ss_pred HHHHHHhh---CC-----CCHHHHHHhhhc
Confidence 99888776 22 267889999974
No 70
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=95.28 E-value=0.089 Score=46.24 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=21.1
Q ss_pred CceEEEEeCCCCceEEEEeeCce
Q 017125 149 RTTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 149 ~~~~lVVDiG~~~t~v~~v~~g~ 171 (377)
..+|+.||+|+.+|+|+||.+|.
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred CCceEEEecCCcccceEeecchh
Confidence 35799999999999999999996
No 71
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=95.01 E-value=0.9 Score=42.21 Aligned_cols=52 Identities=17% Similarity=0.170 Sum_probs=38.2
Q ss_pred HHhhhcccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceecc
Q 017125 121 MTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
+.+.+-+.+++| |++.++.-+++++- +..+.++|.+|.+. ....|.+|+++.
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~~~ 147 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEIRH 147 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEEee
Confidence 445555677887 77888888887632 45789999999764 677788998764
No 72
>PRK10854 exopolyphosphatase; Provisional
Probab=94.80 E-value=0.11 Score=51.84 Aligned_cols=83 Identities=12% Similarity=0.105 Sum_probs=53.2
Q ss_pred EEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEec---hhhhhhhhc-----CCceEEEEeCCCCceEEEEeeCceecccc
Q 017125 105 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI---QAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALPHA 176 (377)
Q Consensus 105 vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~~-----g~~~~lVVDiG~~~t~v~~v~~g~~~~~~ 176 (377)
.++....+-.-.++..+++.+.+..|++. .+++ ++-+...+. ...+++|||||+++|.++.+-+|.+. .
T Consensus 85 ~~vATsAlReA~N~~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~ 161 (513)
T PRK10854 85 CIVGTHTLRQALNATDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--L 161 (513)
T ss_pred EEEehHHHHcCcCHHHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCee--E
Confidence 34444444455667778888877777763 2332 332222211 12368999999999999999998766 4
Q ss_pred eEEecccHHHHHHH
Q 017125 177 ILRLDLAGRDLTDA 190 (377)
Q Consensus 177 ~~~~~~GG~~i~~~ 190 (377)
....++|.-.+++.
T Consensus 162 ~~S~~lG~vrl~e~ 175 (513)
T PRK10854 162 VESRRMGCVSFAQL 175 (513)
T ss_pred eEEEecceeeHHhh
Confidence 45668887666553
No 73
>PRK09557 fructokinase; Reviewed
Probab=94.61 E-value=1.2 Score=41.00 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=35.8
Q ss_pred HHhhhcccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceeccc
Q 017125 121 MTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~~ 175 (377)
+.+.+-+.+++| |.+.++.-|++++- +..+.+.+.+|. .+-...|.||+++..
T Consensus 88 l~~~l~~~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igt-GiG~giv~~G~l~~G 147 (301)
T PRK09557 88 LDKDLSARLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGT-GCGAGVAINGRVHIG 147 (301)
T ss_pred HHHHHHHHHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEcc-ceEEEEEECCEEEec
Confidence 334444566887 77888888887653 235677888874 466777789987643
No 74
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.53 E-value=0.09 Score=51.68 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=50.7
Q ss_pred CCCCCHHhHHHHHhhhcccCCCCe--EEEechhhhhhhhc----C-CceEEEEeCCCCceEEEEeeCceecccceEEecc
Q 017125 110 APLNPKANREKMTQIMFETFNTPA--MYVAIQAVLSLYAS----G-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 182 (377)
Q Consensus 110 ~~~~~~~~~~~l~~~lfe~~~~~~--v~~~~~~~~a~~~~----g-~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~ 182 (377)
..+-.-.+...+.+.+.+.+|++. +.=-.++-++.++. + ...++|+|+|+++|.++-+-+..+. ....+|+
T Consensus 82 sA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~~--~~~Sl~~ 159 (492)
T COG0248 82 SALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEIG--LLISLPL 159 (492)
T ss_pred HHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCccc--eeEEeec
Confidence 333334455556666667777662 22233444443332 3 5689999999999999988877766 5567888
Q ss_pred cHHHHHHHH
Q 017125 183 AGRDLTDAL 191 (377)
Q Consensus 183 GG~~i~~~l 191 (377)
|.-.+++.+
T Consensus 160 G~v~lt~~~ 168 (492)
T COG0248 160 GCVRLTERF 168 (492)
T ss_pred ceEEeehhh
Confidence 865544443
No 75
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=94.44 E-value=0.29 Score=45.27 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=25.1
Q ss_pred cCCceEEEEeCCCCceEEEEeeCceecc
Q 017125 147 SGRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 147 ~g~~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
....+++.+|||+++|+|+||.+|.+..
T Consensus 125 ~~~~~~I~~DmGGTTtDi~~i~~G~p~~ 152 (318)
T TIGR03123 125 KRIPECLFVDMGSTTTDIIPIIDGEVAA 152 (318)
T ss_pred hcCCCEEEEEcCccceeeEEecCCEeee
Confidence 3467899999999999999999999884
No 76
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=94.32 E-value=0.25 Score=45.15 Aligned_cols=156 Identities=17% Similarity=0.217 Sum_probs=85.9
Q ss_pred CCCCCCEEEeCCCCceEEeeeCCC---------CCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeecccc
Q 017125 4 AEDIQPLVCDNGTGMVKAGFAGDD---------APRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIE 74 (377)
Q Consensus 4 ~~~~~~viiD~Gs~~~k~G~~~~~---------~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~ 74 (377)
.++-..|.||+|++++.+=|+--+ .|++.|- .++.. +...-+..|+.
T Consensus 2 te~ilSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~ii-----~kdi~-------------------~rS~i~FTPv~ 57 (473)
T COG4819 2 TEQILSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIEII-----KKDIS-------------------WRSPIFFTPVD 57 (473)
T ss_pred cceeeeeeeeccCceeeeeeeeeEEeecccccccceEEEE-----eccee-------------------eecceeeeeec
Confidence 466778999999999999887421 2222211 01100 01112345666
Q ss_pred CCccCCHHHHHHHHHHhcccccccCCCC--C-cEEEeeCCCCCHHhHHHHHhhhcccCCCCeEE---EechhhhhhhhcC
Q 017125 75 HGIVNNWDDMEKIWHHTFYNELRVAPEE--H-PVLLTEAPLNPKANREKMTQIMFETFNTPAMY---VAIQAVLSLYASG 148 (377)
Q Consensus 75 ~g~i~d~~~~~~~~~~~~~~~L~~~~~~--~-~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~---~~~~~~~a~~~~g 148 (377)
..--.|.++++.+...=| ..-++.|+. . .++++-...-.+.-|. .+..+-..+|-=.|. -.-+++.|.-+.|
T Consensus 58 ~q~~id~~alk~~v~eeY-~~AGi~pesi~sGAvIITGEtArk~NA~~-vl~alSg~aGDFVVAtAGPdLESiIAGkGaG 135 (473)
T COG4819 58 KQGGIDEAALKKLVLEEY-QAAGIAPESIDSGAVIITGETARKRNARP-VLMALSGSAGDFVVATAGPDLESIIAGKGAG 135 (473)
T ss_pred ccCCccHHHHHHHHHHHH-HHcCCChhccccccEEEeccccccccchH-HHHHhhhcccceEEEecCCCHHHHhccCCcc
Confidence 655567888888877765 566676653 3 3555544333332222 222332222211111 1123333333333
Q ss_pred C--------ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHH
Q 017125 149 R--------TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 187 (377)
Q Consensus 149 ~--------~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i 187 (377)
. +..+=+|||+++|..+-+-.|.+. ...-+++||+.+
T Consensus 136 A~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~--dTaCLdiGGRLi 180 (473)
T COG4819 136 AQTLSEQRLTRVLNLDIGGGTTNYSLFDAGKVS--DTACLDIGGRLI 180 (473)
T ss_pred ccchhhhhceEEEEEeccCCccceeeecccccc--cceeeecCcEEE
Confidence 2 233457999999999999889888 445578999754
No 77
>PRK03011 butyrate kinase; Provisional
Probab=94.04 E-value=5.3 Score=37.84 Aligned_cols=48 Identities=19% Similarity=0.298 Sum_probs=33.3
Q ss_pred cCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhh
Q 017125 297 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 348 (377)
Q Consensus 297 ~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~ 348 (377)
+-|||+||.+.-+-|.+++++.+..+. .+.+....+...+.-.||..+
T Consensus 297 D~IVlgGGI~~~~~l~~~I~~~l~~~~----pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 297 DAIVLTGGLAYSKRLVERIKERVSFIA----PVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CEEEEeCccccCHHHHHHHHHHHHhhC----CeEEEeCCCHHHHHHHHHHHH
Confidence 579999999987777788887777653 467766655545555665443
No 78
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=93.78 E-value=0.94 Score=41.16 Aligned_cols=68 Identities=16% Similarity=0.025 Sum_probs=43.3
Q ss_pred ChHHHHHHHHhcCCh-hHHHHhhcCceeccC-CcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhh
Q 017125 275 GIHETTYNSIMKCDV-DIRKDLYGNIVLSGG-STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSI 347 (377)
Q Consensus 275 ~l~~~I~~~i~~~~~-~~~~~l~~nIvl~GG-~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi 347 (377)
+|..+|.+.|-.+.. .-+..-.++|+++|| .+..|.+.+++...+.-. ..++.-+.+..|..-+||.+
T Consensus 209 SLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~-----~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 209 SLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFW-----SKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhc-----CceEEEECCcchHHHhhhcc
Confidence 344455554433321 113344689999999 788999999988776422 25666666677777777764
No 79
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=92.39 E-value=0.13 Score=47.32 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=21.9
Q ss_pred hcCCceEEEEeCCCCceEEEEeeCceecc
Q 017125 146 ASGRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 146 ~~g~~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
..+..+++++|||+++|+|++|.||.+..
T Consensus 73 ~~g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 73 LTGLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp -HT-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred cCCCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 45788999999999999999999999863
No 80
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=91.57 E-value=0.38 Score=44.05 Aligned_cols=83 Identities=18% Similarity=0.248 Sum_probs=55.1
Q ss_pred EEeeCCCCCHHhHHHHHhhhcccCCCCeEEEec---hhhhhh----hhc-CCceEEEEeCCCCceEEEEeeCceecccce
Q 017125 106 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAI---QAVLSL----YAS-GRTTGIVLDSGDGVSHTVPIYEGYALPHAI 177 (377)
Q Consensus 106 vl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~----~~~-g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~ 177 (377)
++....+-.-.++..+++.+.+..|++-= +++ ++.++. .+. ...+++|+|+|+++|.++.+.+|.+. ..
T Consensus 61 ~vATsA~R~A~N~~~~~~~i~~~tGi~i~-iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~--~~ 137 (285)
T PF02541_consen 61 AVATSALREAKNSDEFLDRIKKETGIDIE-IISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV--FS 137 (285)
T ss_dssp EEEEHHHHHSTTHHHHHHHHHHHHSS-EE-EE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE--EE
T ss_pred EEhhHHHHhCcCHHHHHHHHHHHhCCceE-EecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee--Ee
Confidence 44444444456667777788788887632 332 222221 223 56789999999999999999999988 66
Q ss_pred EEecccHHHHHHHH
Q 017125 178 LRLDLAGRDLTDAL 191 (377)
Q Consensus 178 ~~~~~GG~~i~~~l 191 (377)
..+|+|.-.+++.+
T Consensus 138 ~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 138 QSLPLGAVRLTERF 151 (285)
T ss_dssp EEES--HHHHHHHH
T ss_pred eeeehHHHHHHHHH
Confidence 78999998777666
No 81
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=90.09 E-value=1.4 Score=41.02 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=37.4
Q ss_pred CceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC---CCccccchhhhhhhcc
Q 017125 298 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASL 351 (377)
Q Consensus 298 nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~---~~~~~~w~Gasi~a~l 351 (377)
-|+|+|-.+.+|.|.+.+...|...++- ++.... -..-.+-.|++++|+-
T Consensus 263 ~IilSGr~~~~~~~~~~l~~~l~~~~~~----~v~~l~~~~~~aKeaA~GaAiIA~g 315 (343)
T PF07318_consen 263 EIILSGRFSRIPEFRKKLEDRLEDYFPV----KVRKLEGLARKAKEAAQGAAIIANG 315 (343)
T ss_pred EEEEeccccccHHHHHHHHHHHHhhccc----ceeecccccccchhhhhhHHHHhhh
Confidence 4999999999999999999999988762 332221 1123478899998874
No 82
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=90.06 E-value=0.22 Score=44.36 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=44.9
Q ss_pred hHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCC-Cce--EEEECCCCCccccchhhhhhhcc
Q 017125 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS-SMK--IKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~-~~~--v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+.|-|.+.+...-.+.++. -|.+.|-.++||-|-.-+++.|+..+.. ... ++.....-.--.+-.||+++|+-
T Consensus 257 l~e~vvK~v~tllps~~pd---~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAna 332 (374)
T COG2441 257 LIEGVVKDVFTLLPSTYPD---AIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANA 332 (374)
T ss_pred HHHHHHHHHHHhccccCcc---eEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhh
Confidence 5566666665553333333 3999999999998887777777765532 222 33322222223467788888875
No 83
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=88.57 E-value=6.3 Score=35.20 Aligned_cols=18 Identities=17% Similarity=0.137 Sum_probs=15.8
Q ss_pred CEEEeCCCCceEEeeeCC
Q 017125 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~ 26 (377)
-++||+|-++++.|+..+
T Consensus 2 ~L~iDiGNT~~~~a~~~~ 19 (251)
T COG1521 2 LLLIDIGNTRIVFALYEG 19 (251)
T ss_pred eEEEEeCCCeEEEEEecC
Confidence 379999999999998874
No 84
>PRK13324 pantothenate kinase; Reviewed
Probab=86.08 E-value=14 Score=33.22 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.7
Q ss_pred CEEEeCCCCceEEeeeCC
Q 017125 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~ 26 (377)
.+.||+|-+++|.|+..+
T Consensus 2 iL~iDiGNT~ik~gl~~~ 19 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG 19 (258)
T ss_pred EEEEEeCCCceEEEEEEC
Confidence 478999999999998854
No 85
>PRK13321 pantothenate kinase; Reviewed
Probab=85.79 E-value=7.2 Score=35.04 Aligned_cols=19 Identities=32% Similarity=0.407 Sum_probs=16.3
Q ss_pred CEEEeCCCCceEEeeeCCC
Q 017125 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~~ 27 (377)
.+.||+|.+++|+|+..++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 3789999999999998654
No 86
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=85.04 E-value=7 Score=33.85 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.1
Q ss_pred EEEeCCCCceEEeeeCCC
Q 017125 10 LVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 10 viiD~Gs~~~k~G~~~~~ 27 (377)
++||+|-+++|+|+..++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 689999999999998665
No 87
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=84.52 E-value=37 Score=32.12 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=21.1
Q ss_pred eEEEEeCCCCceEEEEeeCceecccce
Q 017125 151 TGIVLDSGDGVSHTVPIYEGYALPHAI 177 (377)
Q Consensus 151 ~~lVVDiG~~~t~v~~v~~g~~~~~~~ 177 (377)
+.+++.+|.+.. ++.|.||+++..+.
T Consensus 175 ~~I~~hLGtGig-~~ai~~Gk~vdgs~ 200 (351)
T TIGR02707 175 NLIVAHMGGGIS-VAAHRKGRVIDVNN 200 (351)
T ss_pred CEEEEEeCCCce-eeeEECCEEEEcCC
Confidence 789999999755 88999999875443
No 88
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=82.69 E-value=2 Score=37.37 Aligned_cols=53 Identities=19% Similarity=0.155 Sum_probs=35.2
Q ss_pred cCCceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCC
Q 017125 147 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY 200 (377)
Q Consensus 147 ~g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 200 (377)
+|.++..|+-+.++.|.|+++.+.+--- .-.++++.=-.+.+++.+.|.-.+.
T Consensus 121 TgA~nPvvLYvSGGNTQvIAYse~rYrI-FGETlDIAvGNClDRFAR~lklsN~ 173 (336)
T KOG2708|consen 121 TGAQNPVVLYVSGGNTQVIAYSEKRYRI-FGETLDIAVGNCLDRFARVLKLSND 173 (336)
T ss_pred ccCCCCEEEEEeCCceEEEEEccceeee-ecceehhhhhhhHHHHHHHhcCCCC
Confidence 4567888888889999999998874321 2234555544566677777754443
No 89
>PRK13318 pantothenate kinase; Reviewed
Probab=82.50 E-value=21 Score=32.02 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=15.7
Q ss_pred CEEEeCCCCceEEeeeCC
Q 017125 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~ 26 (377)
.+.||+|.+++|+|+..+
T Consensus 2 iL~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEEECCCcEEEEEEEC
Confidence 478999999999999863
No 90
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=81.95 E-value=11 Score=33.54 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.6
Q ss_pred EEEeCCCCceEEeeeCCC
Q 017125 10 LVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 10 viiD~Gs~~~k~G~~~~~ 27 (377)
++||+|-+++|+|+..++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999988654
No 91
>PRK13329 pantothenate kinase; Reviewed
Probab=79.69 E-value=15 Score=32.86 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=15.7
Q ss_pred CEEEeCCCCceEEeeeC
Q 017125 9 PLVCDNGTGMVKAGFAG 25 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~ 25 (377)
.++||.|-+.+|.++..
T Consensus 3 ~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYD 19 (249)
T ss_pred EEEEEcCcchheeeEec
Confidence 79999999999999875
No 92
>PRK00976 hypothetical protein; Provisional
Probab=79.47 E-value=12 Score=34.68 Aligned_cols=27 Identities=22% Similarity=0.153 Sum_probs=24.0
Q ss_pred hcCCceEEEEeCCCCceEEEEeeCceec
Q 017125 146 ASGRTTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 146 ~~g~~~~lVVDiG~~~t~v~~v~~g~~~ 173 (377)
-++..+-+|+|+|+ .|....|.||+++
T Consensus 145 ~~~~~~fi~~diss-ntv~~~V~~gkIv 171 (326)
T PRK00976 145 LFGFENFIVSDISS-NTVTLLVKDGKIV 171 (326)
T ss_pred hcCCCcEEEEeccc-cEEEEEEECCEEE
Confidence 45778999999999 8888899999988
No 93
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=77.14 E-value=23 Score=31.62 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=35.0
Q ss_pred ccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceec
Q 017125 127 ETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~ 173 (377)
...+... .+.+...||.++. .....+|||+|-++|-...|.+|++.
T Consensus 138 ~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 138 GGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred ccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 4454555 5667776766654 34689999999999999999999886
No 94
>PRK13326 pantothenate kinase; Reviewed
Probab=76.71 E-value=26 Score=31.61 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=16.8
Q ss_pred CEEEeCCCCceEEeeeCCC
Q 017125 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~~ 27 (377)
-++||+|-+++|+|+..++
T Consensus 8 ~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 8 QLIIDIGNTSISFALYKDN 26 (262)
T ss_pred EEEEEeCCCeEEEEEEECC
Confidence 4899999999999998764
No 95
>PRK13320 pantothenate kinase; Reviewed
Probab=74.53 E-value=32 Score=30.66 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=16.2
Q ss_pred CEEEeCCCCceEEeeeCC
Q 017125 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~ 26 (377)
.+.||+|-+++|.|+..+
T Consensus 4 ~L~iDiGNT~ik~~~~~~ 21 (244)
T PRK13320 4 NLVIDIGNTTTKLAVFEG 21 (244)
T ss_pred EEEEEeCCCcEEEEEEEC
Confidence 689999999999998864
No 96
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.28 E-value=3.1 Score=42.80 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=24.5
Q ss_pred hhhcCCce--EEEEeCCCCceEEEEeeCceec
Q 017125 144 LYASGRTT--GIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 144 ~~~~g~~~--~lVVDiG~~~t~v~~v~~g~~~ 173 (377)
+|-+|..+ ++++|+|+.+|+++-|.+|.+.
T Consensus 270 a~ltg~~~g~~i~~DmGGTStDva~i~~G~pe 301 (674)
T COG0145 270 AYLTGLKAGNAIVFDMGGTSTDVALIIDGEPE 301 (674)
T ss_pred HHhcccccCCEEEEEcCCcceeeeeeecCcEE
Confidence 33346666 9999999999999999988665
No 97
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=58.61 E-value=26 Score=29.63 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=18.9
Q ss_pred cccCCccCCHHHHHHHHHHhccccc
Q 017125 72 PIEHGIVNNWDDMEKIWHHTFYNEL 96 (377)
Q Consensus 72 p~~~g~i~d~~~~~~~~~~~~~~~L 96 (377)
-+++|.|.|.+.+.+.++.++ +.+
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai-~~a 59 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAV-EEA 59 (187)
T ss_pred CccCcEEECHHHHHHHHHHHH-HHH
Confidence 468999999998888888876 443
No 98
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=56.12 E-value=5.7 Score=37.66 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=20.4
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHh
Q 017125 296 YGNIVLSGGSTMFPGIADRMSKEITA 321 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~ 321 (377)
...|++|||++.=+-|.++|++.+..
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~~ 310 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLPG 310 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-TT
T ss_pred CceEEEECCCcCCHHHHHHHHhhCCC
Confidence 45799999999999999999988844
No 99
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=55.30 E-value=18 Score=33.07 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=34.8
Q ss_pred hhhcccCCCCeEEEechhhhhhhhc------CCceEEEEeCCCCceEEEEeeCceeccc
Q 017125 123 QIMFETFNTPAMYVAIQAVLSLYAS------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~------g~~~~lVVDiG~~~t~v~~v~~g~~~~~ 175 (377)
+.+-+.+++| |++.++.-+++++- +..+.+.|.+|.+ .-...|.||+++..
T Consensus 90 ~~l~~~~~~p-v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~G-iG~giv~~G~~~~G 146 (291)
T PRK05082 90 QTLEQLTDLP-TIALNDAQAAAWAEYQALPDDIRNMVFITVSTG-VGGGIVLNGKLLTG 146 (291)
T ss_pred HHHHHHhCCC-EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCC-cceEEEECCEEeeC
Confidence 3333557887 77888888877642 3457888999855 55666778887643
No 100
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=54.10 E-value=93 Score=28.29 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=41.7
Q ss_pred hHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017125 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
|...+...+.-++++ .|||.|+.+..+-|.+++++.+.... ....+.+..+.....++-.||+.++-
T Consensus 221 la~~l~~l~~~~dpe-------~IvlgG~~~~~~~~~~~i~~~l~~~~-~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 221 IARLIADLKATLDCQ-------CVVLGGSVGLAEGYLELVQAYLAQEP-AIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred HHHHHHHHHHHhCCC-------EEEEcCccccHHHHHHHHHHHHHhcc-cccCCeEEECccCCchhhhhHHHHhc
Confidence 555566666656553 67887777766667777877777642 21234555444445667789887653
No 101
>PRK09698 D-allose kinase; Provisional
Probab=51.96 E-value=26 Score=32.12 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=41.9
Q ss_pred hHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcC-hHHHHHHHHHhhCCC---CceEEEECCCCCccccchhhhhhhcc
Q 017125 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPG-IADRMSKEITALAPS---SMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g-~~~rl~~eL~~~~~~---~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|...+...+.-++++ .|||.||.+..+. +.++|++.+++.... ...+++..+.....+.-.||+.++-.
T Consensus 224 la~~l~~li~~ldP~-------~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~~ 296 (302)
T PRK09698 224 LARAIATSINLFDPD-------AIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAHQ 296 (302)
T ss_pred HHHHHHHHHHHhCCC-------EEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHHH
Confidence 445555555545443 5778777777644 568888888875531 22345554444456677898877543
No 102
>PRK13322 pantothenate kinase; Reviewed
Probab=51.76 E-value=1.8e+02 Score=25.98 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=16.0
Q ss_pred CEEEeCCCCceEEeeeCC
Q 017125 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~ 26 (377)
.++||+|-+++|.|+..+
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 489999999999999864
No 103
>PRK13331 pantothenate kinase; Reviewed
Probab=51.13 E-value=16 Score=32.72 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=24.6
Q ss_pred CCCCCCCCCEEEeCCCCceEEeeeCCC
Q 017125 1 MADAEDIQPLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 1 ~~~~~~~~~viiD~Gs~~~k~G~~~~~ 27 (377)
||+...+..++||+|-+++++|+..++
T Consensus 1 ~~~~~~~~~L~iDiGNT~~~~g~f~~~ 27 (251)
T PRK13331 1 MMFHTSNEWLALMIGNSRLHWGYFSGE 27 (251)
T ss_pred CCCCCCCcEEEEEeCCCcEEEEEEECC
Confidence 888899999999999999999998654
No 104
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=50.69 E-value=23 Score=32.49 Aligned_cols=53 Identities=9% Similarity=0.035 Sum_probs=37.0
Q ss_pred HHhhhcccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceeccc
Q 017125 121 MTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~~ 175 (377)
+.+.+-+.+++| |.+.++.-+++++- +..+.+.|.+|.+ .-...|.||+++..
T Consensus 88 l~~~l~~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG-iG~giv~~G~l~~G 147 (303)
T PRK13310 88 LRADLSARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLVFNGKPISG 147 (303)
T ss_pred HHHHHHHHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc-eEEEEEECCEEeeC
Confidence 444444667887 77888888777542 3467888889865 67777889987644
No 105
>PRK00292 glk glucokinase; Provisional
Probab=48.19 E-value=2e+02 Score=26.54 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=32.2
Q ss_pred hhhcccCCCCeEEEechhhhhhhhc-------------CC----ceEEEEeCCCCceEEEEeeCc
Q 017125 123 QIMFETFNTPAMYVAIQAVLSLYAS-------------GR----TTGIVLDSGDGVSHTVPIYEG 170 (377)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~~-------------g~----~~~lVVDiG~~~t~v~~v~~g 170 (377)
+.+-+.+++|.|.+.++.-+++++- ++ .+.++|-+|.+ .-...|.+|
T Consensus 84 ~~l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG-iG~giv~~g 147 (316)
T PRK00292 84 AAMKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG-LGVAGLVPV 147 (316)
T ss_pred HHHHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc-ceEEEEEec
Confidence 3344567888899999999998873 22 46677888755 445555665
No 106
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=47.66 E-value=23 Score=30.06 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=35.5
Q ss_pred hhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 295 LYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 295 l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
-.+.|+++||.++-+-+.+.+.+-+. .+|.+... ..++-.||+++|..
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~------~~V~~~~~---~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLG------RPVVRPEV---EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHT------SEEEEESS---STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhC------CceEeCCC---CchHHHHHHHHHHh
Confidence 35779999999999988877776663 35555443 46688999988754
No 107
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=43.12 E-value=26 Score=25.83 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=16.3
Q ss_pred CCEEEeCCCCceEEeeeCC
Q 017125 8 QPLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 8 ~~viiD~Gs~~~k~G~~~~ 26 (377)
..+.||+|.+.+++|+..+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 3789999999999998754
No 108
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=42.21 E-value=26 Score=31.23 Aligned_cols=50 Identities=20% Similarity=0.466 Sum_probs=37.2
Q ss_pred ceeccCC-cCCcChHHHHHHHHHhhCCC-CceEEEECCCCCccccchhhhhhhcc
Q 017125 299 IVLSGGS-TMFPGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 299 Ivl~GG~-s~i~g~~~rl~~eL~~~~~~-~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|-+-|+. -+.|+|.+++++.|..+.+. ..+|++.... -++-+||+|.|..
T Consensus 189 VavDGSv~~~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~---dgsg~GAAi~AA~ 240 (243)
T PF03727_consen 189 VAVDGSVYEKYPNFRERLQEALDELLPEEGCKVEFVLSE---DGSGVGAAIAAAV 240 (243)
T ss_dssp EEEESHHHHHSTTHHHHHHHHHHHHSTT-CEEEEEEE-S---STHHHHHHHHHHH
T ss_pred EEEeCcceeeCHHHHHHHHHHHHHhcccccceEEEEEec---CchHHHHHHHHHH
Confidence 3344444 57899999999999999987 4467776654 4589999998865
No 109
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=41.57 E-value=2.2e+02 Score=25.96 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=41.7
Q ss_pred hHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhC-CCCceEEEECCCCCccccchhhhhhh
Q 017125 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALA-PSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~-~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
|...|...+.-++++ .|||-||.+..+-|.+.+++.+.+.. +....+.+........+.-.||+.++
T Consensus 233 la~~l~n~~~~ldP~-------~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 233 LAICLGNILTIVDPH-------LVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHHHHHHcCCC-------EEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 555566666666553 67787777776778888888887543 22123445444444566777888765
No 110
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=40.92 E-value=25 Score=26.05 Aligned_cols=49 Identities=20% Similarity=0.483 Sum_probs=34.4
Q ss_pred cCCccCCHHHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccC
Q 017125 74 EHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 129 (377)
Q Consensus 74 ~~g~i~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~ 129 (377)
..|.+.|+..++..++.+. +.| ++..+.-.+++. ...-+.+++++++.+
T Consensus 42 ~~g~v~Df~~lk~~~~~i~-~~l-----Dh~~Lne~~~~~-~pT~E~ia~~i~~~l 90 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVV-DRL-----DHALLNDVPGLE-NPTAENLARWIYDRL 90 (92)
T ss_pred CccEEEEHHHHHHHHHHHH-HhC-----CCcEeeCCCCCC-CCCHHHHHHHHHHHH
Confidence 4789999999999998865 433 345555555553 446688888888765
No 111
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=39.45 E-value=1.6e+02 Score=30.38 Aligned_cols=24 Identities=8% Similarity=-0.025 Sum_probs=20.0
Q ss_pred hhhcccCCCCeEEEechhhhhhhh
Q 017125 123 QIMFETFNTPAMYVAIQAVLSLYA 146 (377)
Q Consensus 123 ~~lfe~~~~~~v~~~~~~~~a~~~ 146 (377)
+.+-+.++++.|.+.++.-|++++
T Consensus 99 ~~l~~~~g~~~v~l~ND~~aaA~g 122 (638)
T PRK14101 99 EATRRALGFDTLLVVNDFTALAMA 122 (638)
T ss_pred HHHHHHcCCCeEEEEchHHHHHcC
Confidence 444466899999999999999998
No 112
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=36.88 E-value=20 Score=34.93 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=20.9
Q ss_pred ceEEEEeCCCCceEEEEeeCceec
Q 017125 150 TTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 150 ~~~lVVDiG~~~t~v~~v~~g~~~ 173 (377)
...++||+|+.+|+|-.+.+|.+-
T Consensus 249 g~ll~VDIGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 249 GDFILIDIGGATTDVHSAAAGELS 272 (463)
T ss_pred CCEEEEEcCccccchhhccCCCcc
Confidence 357999999999999999999554
No 113
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=36.86 E-value=21 Score=33.55 Aligned_cols=50 Identities=14% Similarity=0.087 Sum_probs=33.8
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC------CCccccchhhhhhhc
Q 017125 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP------ERKYSVWIGGSILAS 350 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~------~~~~~~w~Gasi~a~ 350 (377)
.++++++||.|.=.-|+++|++..... .++++-++ +.-.-+|.|...+.+
T Consensus 264 ~~~lvv~GGVAaN~~LR~~l~~~~~~~-----~~~~~~p~~~~ctDNaaMIa~~g~~~~~~ 319 (345)
T PTZ00340 264 SNEVLIVGGVGCNLRLQEMMQQMAKER-----GGKLFAMDERYCIDNGAMIAYAGLLEYLS 319 (345)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHHc-----CCEEEeCChHhhhhhHHHHHHHHHHHHHc
Confidence 478999999999887888887766542 34555543 223347888776654
No 114
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=36.63 E-value=23 Score=33.59 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=20.8
Q ss_pred cCceeccCCcCCcChHHHHHHHH
Q 017125 297 GNIVLSGGSTMFPGIADRMSKEI 319 (377)
Q Consensus 297 ~nIvl~GG~s~i~g~~~rl~~eL 319 (377)
+.|++|||++.-|-|.+||++.|
T Consensus 288 ~~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 288 DELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred CEEEEECCCcchHHHHHHHHHhc
Confidence 35999999999999999999877
No 115
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=36.28 E-value=3e+02 Score=24.37 Aligned_cols=53 Identities=13% Similarity=0.016 Sum_probs=36.4
Q ss_pred HHhhhcccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceeccc
Q 017125 121 MTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALPH 175 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~~ 175 (377)
+.+.+-+.+++| |.+-++.-+++++. +..+.+.|-+|.+ .-...|.||.++..
T Consensus 88 l~~~l~~~~~~p-V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtG-iG~giv~~G~l~~G 147 (256)
T PRK13311 88 LQADLSRLIQRE-VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTG-VGGGLIVNGSIVSG 147 (256)
T ss_pred hHHHHHHHHCCC-EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcC-eEEEEEECCEEecC
Confidence 444444556777 67888888777643 3467888888854 67777889987653
No 116
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.51 E-value=2e+02 Score=26.04 Aligned_cols=44 Identities=20% Similarity=0.442 Sum_probs=28.7
Q ss_pred ceEEEEeCCCCceEEEEeeCceec---ccceEEecccHHHHHHHHHHHH
Q 017125 150 TTGIVLDSGDGVSHTVPIYEGYAL---PHAILRLDLAGRDLTDALMKIL 195 (377)
Q Consensus 150 ~~~lVVDiG~~~t~v~~v~~g~~~---~~~~~~~~~GG~~i~~~l~~~l 195 (377)
.-.+|||+|.++|....|-++++. .++ +..+.-..+..++.++.
T Consensus 227 ~palvVd~GngHttaalvdedRI~gv~EHH--T~~Lspekled~I~rf~ 273 (342)
T COG4012 227 DPALVVDYGNGHTTAALVDEDRIVGVYEHH--TIRLSPEKLEDQIIRFV 273 (342)
T ss_pred CceEEEEccCCceEEEEecCCeEEEEeecc--cccCCHHHHHHHHHHHH
Confidence 468999999999999999888764 122 22333345555555443
No 117
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=34.59 E-value=1.1e+02 Score=22.28 Aligned_cols=44 Identities=14% Similarity=0.005 Sum_probs=25.3
Q ss_pred EEEEeCCCCceEEEEe-eCceecccceEEecccHHHHHHHHHHHH
Q 017125 152 GIVLDSGDGVSHTVPI-YEGYALPHAILRLDLAGRDLTDALMKIL 195 (377)
Q Consensus 152 ~lVVDiG~~~t~v~~v-~~g~~~~~~~~~~~~GG~~i~~~l~~~l 195 (377)
.+.+|+|...+.++.+ .+|..+........-+...+-+.+.+++
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i 47 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLI 47 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHH
Confidence 5789999988888877 4666664332222213333444444444
No 118
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=32.51 E-value=4.8e+02 Score=25.89 Aligned_cols=86 Identities=14% Similarity=0.128 Sum_probs=48.4
Q ss_pred HHHHHHHHHhccccccc-CCCCCcEEEeeCCCC---CHHhHHHHHhhhcccCC--------CCeEEEec-------hhhh
Q 017125 82 DDMEKIWHHTFYNELRV-APEEHPVLLTEAPLN---PKANREKMTQIMFETFN--------TPAMYVAI-------QAVL 142 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~-~~~~~~vvl~~~~~~---~~~~~~~l~~~lfe~~~--------~~~v~~~~-------~~~~ 142 (377)
+.++.+++.+- +.... ...+.||.|---.-+ +....+.+++.+...+. ...+.++. .-++
T Consensus 65 ~~l~pLlefA~-~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~ 143 (501)
T KOG1386|consen 65 VYLTPLLEFAK-EHIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIA 143 (501)
T ss_pred HHHHHHHHHHH-hhCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHH
Confidence 35666666663 33332 245677776644333 55666666666654444 12333333 2344
Q ss_pred hhhhcC-----------CceEEEEeCCCCceEEEEee
Q 017125 143 SLYASG-----------RTTGIVLDSGDGVSHTVPIY 168 (377)
Q Consensus 143 a~~~~g-----------~~~~lVVDiG~~~t~v~~v~ 168 (377)
+.|..| ..|.=.+|+|+++|.|+=+.
T Consensus 144 ~NY~LG~f~~~~~~~~~~~T~G~lDlGGAS~QItFe~ 180 (501)
T KOG1386|consen 144 ANYLLGRFGKKNRWDSRKETFGALDLGGASTQITFEP 180 (501)
T ss_pred HHHHHHhccccCcccCCcceeeeEecCCceeEEEEec
Confidence 455443 34566789999999998443
No 119
>PF13941 MutL: MutL protein
Probab=31.37 E-value=29 Score=33.97 Aligned_cols=74 Identities=19% Similarity=0.252 Sum_probs=44.4
Q ss_pred CCcEEEeeCCC------CCHHhHHHHHhhhcccC-CCC---------eEEEechhhhhh-----hhc-CCceEEEEeCCC
Q 017125 102 EHPVLLTEAPL------NPKANREKMTQIMFETF-NTP---------AMYVAIQAVLSL-----YAS-GRTTGIVLDSGD 159 (377)
Q Consensus 102 ~~~vvl~~~~~------~~~~~~~~l~~~lfe~~-~~~---------~v~~~~~~~~a~-----~~~-g~~~~lVVDiG~ 159 (377)
..+++++++.+ +...-|+.+.+++.+.. +.+ .-.++|.|-+.. ++- +....++||+|+
T Consensus 178 ~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIGG 257 (457)
T PF13941_consen 178 GKEVVITENVMPKIDVLNVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIGG 257 (457)
T ss_pred CCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEccC
Confidence 45677777554 23455565555554321 112 223444444432 333 567899999999
Q ss_pred CceEEEEeeCceeccc
Q 017125 160 GVSHTVPIYEGYALPH 175 (377)
Q Consensus 160 ~~t~v~~v~~g~~~~~ 175 (377)
.+|+|-.+.+|.+...
T Consensus 258 ATTDVhSv~~~~~~~~ 273 (457)
T PF13941_consen 258 ATTDVHSVAEGSPEIP 273 (457)
T ss_pred cccchhhhccCCcccc
Confidence 9999999997755433
No 120
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=30.06 E-value=83 Score=27.69 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.|=+++| ..+++||||+.....+.++++.+++++-|.||-.
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (229)
T cd08627 74 DVLHTIKEHAF------VTSEYPIILSIEDHCSIVQQRNMAQHFKKVFGDM 118 (229)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEEcccCCHHHHHHHHHHHHHHHhhh
Confidence 34555555555 3578999999999999999999999998877753
No 121
>PRK15027 xylulokinase; Provisional
Probab=29.93 E-value=40 Score=33.42 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=32.0
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||+++-+-+.+.+..-+ +.+|.+. .+...++-.||+++|..
T Consensus 387 ~~~i~~~GGga~s~~w~Qi~Adv~------g~pv~~~--~~~~~~~a~GaA~lA~~ 434 (484)
T PRK15027 387 PQSVTLIGGGARSEYWRQMLADIS------GQQLDYR--TGGDVGPALGAARLAQI 434 (484)
T ss_pred ccEEEEeCcccCCHHHHHHHHHHh------CCeEEee--cCCCcchHHHHHHHHHH
Confidence 457999999999886666555555 2244332 22334678999999875
No 122
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=29.80 E-value=92 Score=28.62 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=31.5
Q ss_pred EEEEeCCCCceEEEEeeCceecccceEEecccHH---HHHHHHHHHHHHcCC
Q 017125 152 GIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR---DLTDALMKILTERGY 200 (377)
Q Consensus 152 ~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~---~i~~~l~~~l~~~~~ 200 (377)
.+=||+|+.+|.++.+-++.++ .....+.|++ ...+.|.+++.+.+.
T Consensus 34 ~~GIDiGStt~K~Vlld~~~i~--~~~~~~tg~~~~~~a~~~l~~~l~~~g~ 83 (293)
T TIGR03192 34 TCGIDVGSVSSQAVLVCDGELY--GYNSMRTGNNSPDSAKNALQGIMDKIGM 83 (293)
T ss_pred EEEEEeCchhEEEEEEeCCEEE--EEEeecCCCCHHHHHHHHHHHHHHHcCC
Confidence 3447999999999999877655 3344566653 455566666655543
No 123
>PLN02666 5-oxoprolinase
Probab=28.72 E-value=54 Score=36.65 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.1
Q ss_pred ceEEEEeCCCCceEEEEeeCce
Q 017125 150 TTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 150 ~~~lVVDiG~~~t~v~~v~~g~ 171 (377)
.+.+++|||+++|+|+.| +|.
T Consensus 314 ~~~I~~DmGGTTtDv~li-~g~ 334 (1275)
T PLN02666 314 KPVIGFDMGGTSTDVSRY-DGS 334 (1275)
T ss_pred CCEEEEecCCceeeeEEE-cCc
Confidence 468999999999999988 554
No 124
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=28.18 E-value=50 Score=30.51 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=25.4
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC
Q 017125 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 335 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~ 335 (377)
.++|+++||.+.=.-+.++|.+.+... .++++.++
T Consensus 259 ~~~vvlsGGVa~N~~L~~~l~~~~~~~-----g~~v~~~~ 293 (305)
T TIGR00329 259 PKELVLVGGVSANKRLREMLETLCQEL-----NVEFYYPP 293 (305)
T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHC-----CCEEECCC
Confidence 358999999998888888888777543 34555443
No 125
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=27.89 E-value=90 Score=28.04 Aligned_cols=45 Identities=22% Similarity=0.295 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.|-+++| ..+++||||+.....+..+++.+++++-+.+|-.
T Consensus 76 dv~~aI~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 120 (257)
T cd08626 76 DVIQAIKDTAF------VTSDYPVILSFENHCSKPQQYKLAKYCEEIFGDL 120 (257)
T ss_pred HHHHHHHHHhc------ccCCCCEEEEEeccCCHHHHHHHHHHHHHHHhHh
Confidence 45566666666 2468999999998889999999999998877643
No 126
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=27.34 E-value=94 Score=27.93 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.|-+++| ..+++||||+.....+..+++.+++++-+.||-.
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd~ 118 (258)
T cd08630 74 DVIQAVRQHAF------TASPYPVILSLENHCGLEQQAAMARHLQTILGDM 118 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHhhh
Confidence 44555555565 2578999999998889999999999998877643
No 127
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=27.14 E-value=93 Score=27.88 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.|=+++| ..+++||||+.....+.++++.+++++-+.||-
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 74 DVVEAINRSAF------ITSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 34555555555 256899999999888999999999999887764
No 128
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=27.03 E-value=46 Score=31.10 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=35.8
Q ss_pred HHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC------CCccccchhhhhhhcc
Q 017125 292 RKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP------ERKYSVWIGGSILASL 351 (377)
Q Consensus 292 ~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~------~~~~~~w~Gasi~a~l 351 (377)
+..=.+.++++||.|.=..|++++++.... . .++++.+| +.-+-+|.|...|.+-
T Consensus 258 ~~~~~~~lvi~GGVaaN~~LR~~l~~~~~~---~--g~~~~~p~~~lCtDNaaMIA~ag~~~~~~g 318 (342)
T COG0533 258 KHTGKKELVIAGGVAANSRLREMLEEMCKE---R--GAEVYIPPLELCTDNAAMIAYAGLLRYKAG 318 (342)
T ss_pred HHhCCCEEEEeccHHHhHHHHHHHHHHHHh---c--CCEEEcCChHhccchHHHHHHHHHHHHHcC
Confidence 333346799999999888777777765542 1 34555444 2234478888888764
No 129
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=26.73 E-value=95 Score=27.90 Aligned_cols=45 Identities=13% Similarity=0.238 Sum_probs=34.8
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.|-+++| ..+++||||+.....+..++..+++++-|.||-.
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd~ 118 (257)
T cd08595 74 EVITTVEKYAF------EKSDYPVVLSLENHCSTEQQEIMAHYLVSILGEK 118 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence 44555555565 2678999999998889999999999998877643
No 130
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=26.65 E-value=1e+02 Score=27.64 Aligned_cols=45 Identities=27% Similarity=0.367 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.|-+++| ..+++||||+.....+..+++.+++++-|.||-.
T Consensus 74 dv~~aI~~~AF------~~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (253)
T cd08632 74 DVIETINKYAF------VKNEFPVILSIENHCSIQQQKKIAQYLKEIFGDK 118 (253)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhhh
Confidence 44555555555 2578999999998889999999999998877643
No 131
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=26.18 E-value=1e+02 Score=27.22 Aligned_cols=44 Identities=27% Similarity=0.397 Sum_probs=33.9
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+=+++| ..+++||||+.....+.++++.+++++-+.||-
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 74 DVLKTIKEHAF------VTSEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 44555555555 357899999998888999999999998887764
No 132
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=26.12 E-value=98 Score=27.84 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.|-+++| ..+++||||+.....+..+++.+++++-|.||-
T Consensus 74 ~v~~~Ik~~AF------~~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 74 DVVAAVAQYAF------QVSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 34555555555 357899999998888999999999999887764
No 133
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=26.08 E-value=1e+02 Score=27.08 Aligned_cols=44 Identities=27% Similarity=0.336 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+=+++| ..+++||||+.....+.++++.+++++-+.||-
T Consensus 74 dv~~aI~~~AF------~~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 74 DVIETINKYAF------IKNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 34555555555 257899999998888999999999998887764
No 134
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=25.92 E-value=4e+02 Score=24.56 Aligned_cols=91 Identities=20% Similarity=0.225 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcccccccCCCC--CcEEEeeCCCCCHHhHHHHHhhhcccCCC--CeEEEechhhhhhhhc--CCceEEEE
Q 017125 82 DDMEKIWHHTFYNELRVAPEE--HPVLLTEAPLNPKANREKMTQIMFETFNT--PAMYVAIQAVLSLYAS--GRTTGIVL 155 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~--~~vvl~~~~~~~~~~~~~l~~~lfe~~~~--~~v~~~~~~~~a~~~~--g~~~~lVV 155 (377)
+.+++.++.++ .+-+.+.+. +.|.+..+-...+...+++.+.+-..|.- ..+++..+..+++++. |...|+|+
T Consensus 47 ~rie~~i~~A~-~k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVL 125 (336)
T KOG1794|consen 47 SRIEDMIREAK-EKAGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVL 125 (336)
T ss_pred HHHHHHHHHHH-hhcCCCccCccceeeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEE
Confidence 45777777776 555555554 66888877777777777788777766652 3577888888777765 45899999
Q ss_pred eCCCCceEEEEeeCceec
Q 017125 156 DSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 156 DiG~~~t~v~~v~~g~~~ 173 (377)
=-|.++.+-...-||..-
T Consensus 126 iaGTgs~crl~~~DGs~~ 143 (336)
T KOG1794|consen 126 IAGTGSNCRLVNPDGSEK 143 (336)
T ss_pred EecCCceeEEECCCCCcc
Confidence 999888877777788543
No 135
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=25.61 E-value=1e+02 Score=27.70 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.|-+++| ..+++||||+.....+..+++.+++++-+.||-
T Consensus 74 ~v~~~I~~~AF------~~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 74 DVLRAIRDYAF------KASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 34555555555 257899999999888999999999999887764
No 136
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=25.42 E-value=1e+02 Score=27.17 Aligned_cols=44 Identities=27% Similarity=0.353 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.|=+++| ..+++||||+.....+.++++.+++++-+.||-
T Consensus 74 dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 74 DVCRAIKKYAF------VTSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 44555555555 256899999998888999999999998887764
No 137
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=25.34 E-value=1e+02 Score=27.72 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.|-+++| ..+++||||+.....+.+++..+++++-|.||-
T Consensus 74 ~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAF------KVSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 44555555555 256899999999888999999999999887764
No 138
>PF13941 MutL: MutL protein
Probab=25.32 E-value=43 Score=32.86 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=18.6
Q ss_pred CEEEeCCCCceEEeeeC--CCCCCC
Q 017125 9 PLVCDNGTGMVKAGFAG--DDAPRA 31 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~--~~~P~~ 31 (377)
.+++|+||++||+-... +..+++
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ 26 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRL 26 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEE
Confidence 58999999999998877 555553
No 139
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=25.13 E-value=1.1e+02 Score=27.59 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.|=+++| ..+++||||+.....+.+++..+++++-+.||-.
T Consensus 76 ~v~~aIk~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd~ 120 (257)
T cd08591 76 DVIEAIAETAF------KTSEYPVILSFENHCSSKQQAKMAEYCREIFGDL 120 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 34555555555 2578999999998889999999999998877643
No 140
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=24.82 E-value=86 Score=28.41 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=33.6
Q ss_pred CCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechh
Q 017125 101 EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 140 (377)
Q Consensus 101 ~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~ 140 (377)
.+.-+++++|+-+..+..+++.+++ +.|+++...+++..
T Consensus 186 aD~ai~VTEPTp~glhD~kr~~el~-~~f~ip~~iViNr~ 224 (284)
T COG1149 186 ADLAILVTEPTPFGLHDLKRALELV-EHFGIPTGIVINRY 224 (284)
T ss_pred CCEEEEEecCCccchhHHHHHHHHH-HHhCCceEEEEecC
Confidence 3566999999999999999999998 88999988777765
No 141
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=24.59 E-value=1.1e+02 Score=27.34 Aligned_cols=45 Identities=27% Similarity=0.336 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.|-+++| ..+++||||+.....+..+++.+++++-|.||-.
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (254)
T cd08633 74 DVIETINKYAF------IKNEYPVILSIENHCSVPQQKKMAQYLTEILGDK 118 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhHh
Confidence 44555555665 2578999999998889999999999998877643
No 142
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=24.49 E-value=1.5e+02 Score=28.63 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=31.6
Q ss_pred eEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCC
Q 017125 151 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY 200 (377)
Q Consensus 151 ~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 200 (377)
..+=||+|+.+|-++.+.++.++.........--....+.+.+++.+.|.
T Consensus 145 ~~lGIDiGSTttK~Vl~dd~~Ii~~~~~~t~~~~~~a~~~l~~~l~~~Gl 194 (404)
T TIGR03286 145 LTLGIDSGSTTTKAVVMEDNEVIGTGWVPTTKVIESAEEAVERALEEAGV 194 (404)
T ss_pred EEEEEEcChhheeeEEEcCCeEEEEEEeecccHHHHHHHHHHHHHHHcCC
Confidence 35668999999999998888776444332211134455556666655443
No 143
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=24.31 E-value=92 Score=30.66 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=32.5
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++.|+++||.|+-+-+.+.+.+-+. .+|.+... .-++-.||+++|..
T Consensus 391 ~~~i~~~GG~s~s~~~~Q~~Adv~g------~pv~~~~~---~e~~a~GaA~~a~~ 437 (481)
T TIGR01312 391 IQSIRLIGGGAKSPAWRQMLADIFG------TPVDVPEG---EEGPALGAAILAAW 437 (481)
T ss_pred cceEEEeccccCCHHHHHHHHHHhC------CceeecCC---CcchHHHHHHHHHH
Confidence 4679999999999877666665552 23443332 34678999998765
No 144
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=23.25 E-value=88 Score=27.29 Aligned_cols=71 Identities=18% Similarity=0.424 Sum_probs=40.3
Q ss_pred hHHHHHHHH--hcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC-CCccccchhhhhhhcc
Q 017125 276 IHETTYNSI--MKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP-ERKYSVWIGGSILASL 351 (377)
Q Consensus 276 l~~~I~~~i--~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~-~~~~~~w~Gasi~a~l 351 (377)
|-|.+..-- ++.-.|+.+-.-..||++|.+|. |+.... ++.. .+.+.++.++... .|-=.+|+||.+++.+
T Consensus 54 IrEStVSRaMTrRYf~DldkyAesDvviVGAGSa--GLsAAY--~I~~-~rPdlkvaIIE~SVaPGGGaWLGGQLFSAM 127 (328)
T KOG2960|consen 54 IRESTVSRAMTRRYFKDLDKYAESDVVIVGAGSA--GLSAAY--VIAK-NRPDLKVAIIESSVAPGGGAWLGGQLFSAM 127 (328)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhccceEEECCCcc--ccceee--eeec-cCCCceEEEEEeeecCCCcccccchhhhhh
Confidence 655554322 23344555555578999997763 332111 1111 1234566665532 4667799999999887
No 145
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=23.14 E-value=62 Score=28.56 Aligned_cols=19 Identities=42% Similarity=0.316 Sum_probs=15.8
Q ss_pred CEEEeCCCCceEEeeeCCC
Q 017125 9 PLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~~ 27 (377)
.++||+||+++|+....++
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 4799999999999887643
No 146
>PRK14878 UGMP family protein; Provisional
Probab=22.98 E-value=74 Score=29.66 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=26.5
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC
Q 017125 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 335 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~ 335 (377)
.++|+++||.++=.-+.+++.+.+... .++++.++
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~~~~-----g~~v~~~~ 276 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMAEDR-----GAKFYVVP 276 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHC-----CCEEECCC
Confidence 458999999999998999998887653 23555544
No 147
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=22.70 E-value=85 Score=30.91 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=40.0
Q ss_pred ceeccCC--cCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcccc
Q 017125 299 IVLSGGS--TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLST 353 (377)
Q Consensus 299 Ivl~GG~--s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~ 353 (377)
+|-++|+ =.-|.|.+.+++.|++++.....+.+..++| .+-+||+++|....
T Consensus 415 ~VgvdGsly~~yP~f~~~m~~~l~eLlg~~~~v~i~~s~d---gSg~GAAL~Aav~~ 468 (474)
T KOG1369|consen 415 TVGVDGSLYKNHPFFREYLKEALRELLGPSIHVKLVLSED---GSGRGAALIAAVAS 468 (474)
T ss_pred EEEeccchhHcCchHHHHHHHHHHHHhCCCceEEEEECCC---CccccHHHHHHHHh
Confidence 3445554 3569999999999999997656788877754 48899999998754
No 148
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=22.65 E-value=1.3e+02 Score=26.49 Aligned_cols=45 Identities=29% Similarity=0.357 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.|=+++|. .+++||||+.....+.++++.+++++-+.||-.
T Consensus 74 dv~~~Ik~~aF~------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (226)
T cd08558 74 DVIEAIKEYAFV------TSPYPVILSLENHCSLEQQKKMAQILKEIFGDK 118 (226)
T ss_pred HHHHHHHHHhcc------cCCCCeEEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 455666566652 468999999998889999999999988877643
No 149
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=22.38 E-value=1.1e+02 Score=30.42 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=32.1
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||.|+-+-+.+.+.+-+ +..|.+...+ -++-+||+++|..
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~------g~pV~~~~~~---e~~alGaAl~aa~ 453 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADIL------GKDIVVPEMA---ETTALGAALLAGL 453 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHh------CCceEecCcc---cchHHHHHHHHHh
Confidence 467899999999886666665555 2245444432 3578999999864
No 150
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=21.71 E-value=1.3e+02 Score=27.10 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTP 132 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~ 132 (377)
+.++.|=+++| ..+++||||+.....+.++++.+++++-+.||-.
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~~ 118 (260)
T cd08597 74 SVIEAINEYAF------VASEYPLILCIENHCSEKQQLVMAQYLKEIFGDK 118 (260)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHH
Confidence 44555555555 2568999999988889999999998888877643
No 151
>PLN02596 hexokinase-like
Probab=21.25 E-value=1.1e+02 Score=30.29 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=33.9
Q ss_pred cCCcChHHHHHHHHHhhCCCC--ceEEEECCCCCccccchhhhhhhccc
Q 017125 306 TMFPGIADRMSKEITALAPSS--MKIKVVAPPERKYSVWIGGSILASLS 352 (377)
Q Consensus 306 s~i~g~~~rl~~eL~~~~~~~--~~v~v~~~~~~~~~~w~Gasi~a~l~ 352 (377)
-+.|+|.+++++.|+++++.. .++.+.... -.+-.||+|+|...
T Consensus 439 e~~p~f~~~l~~al~ellg~~~~~~i~~~~s~---DGSG~GAAl~AA~~ 484 (490)
T PLN02596 439 EHYRVFRNYLHSSVWEMLGSELSDNVVIEHSH---GGSGAGALFLAACQ 484 (490)
T ss_pred eeCcCHHHHHHHHHHHHhCcccCCcEEEEEcc---CchhHHHHHHHHhh
Confidence 457999999999999998643 356665554 34899999999874
No 152
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=20.88 E-value=86 Score=31.14 Aligned_cols=47 Identities=13% Similarity=0.102 Sum_probs=32.4
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|.++||.|+-+-+.+.+..-+ +..|.+... + -++-+||+++|..
T Consensus 400 ~~~i~~~GGga~s~~w~Qi~ADv~------g~pv~~~~~--~-e~~alGaA~~a~~ 446 (493)
T TIGR01311 400 ITKLRVDGGMTNNNLLMQFQADIL------GVPVVRPKV--T-ETTALGAAYAAGL 446 (493)
T ss_pred CceEEEecccccCHHHHHHHHHhc------CCeeEecCC--C-cchHHHHHHHHHh
Confidence 467999999999987777666555 224444332 2 4567999999765
No 153
>PRK13333 pantothenate kinase; Reviewed
Probab=20.66 E-value=1.1e+02 Score=26.41 Aligned_cols=35 Identities=20% Similarity=0.445 Sum_probs=21.3
Q ss_pred ccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceEEEEeeCce
Q 017125 127 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 127 e~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~~v~~g~ 171 (377)
+++|+++ .+++++. ..++|||+|...|-= .+.+|.
T Consensus 70 ~~LGvDR-------~~a~~aa--~~~lVIDaGTAiTiD-vv~~g~ 104 (206)
T PRK13333 70 QGLGIDR-------IAACYAI--EDGVVVDAGSAITVD-IMSNGI 104 (206)
T ss_pred hhccHHH-------HHHhccC--CCeEEEEcCCceEEE-EEcCCc
Confidence 4466554 3444443 579999999886543 335553
No 154
>PTZ00107 hexokinase; Provisional
Probab=20.20 E-value=1.2e+02 Score=29.98 Aligned_cols=51 Identities=12% Similarity=0.161 Sum_probs=37.6
Q ss_pred ceeccCC-cCCcChHHHHHHHHHhhCCCC-ceEEEECCCCCccccchhhhhhhccc
Q 017125 299 IVLSGGS-TMFPGIADRMSKEITALAPSS-MKIKVVAPPERKYSVWIGGSILASLS 352 (377)
Q Consensus 299 Ivl~GG~-s~i~g~~~rl~~eL~~~~~~~-~~v~v~~~~~~~~~~w~Gasi~a~l~ 352 (377)
|-+.|+. -..|+|++++++.|..++... .+|.+.... -.+-+||+|.|...
T Consensus 408 VgvDGSv~~~~p~f~~~~~~~l~~ll~~~~~~v~l~~a~---DGSg~GAAl~AA~~ 460 (464)
T PTZ00107 408 VAIDGSVYVKNPWFRRLLQEYINSILGPDAGNVVFYLAD---DGSGKGAAIIAAMV 460 (464)
T ss_pred EEEeCcceecCccHHHHHHHHHHHHhCCCCCcEEEEEcc---CchHHHHHHHHHHh
Confidence 4455554 457999999999999987433 467776654 45899999998763
No 155
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=20.05 E-value=1.6e+02 Score=26.49 Aligned_cols=44 Identities=25% Similarity=0.411 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 131 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~ 131 (377)
+.++.+-+++| ..+++||||+.....+.++++.+++++-+.||-
T Consensus 74 dv~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08628 74 DVVQAIKDHAF------VTSEYPVILSIEEHCSVEQQRHMAKVFKEVFGD 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 34555555555 256799999998888999999999988887764
Done!