Query 017125
Match_columns 377
No_of_seqs 149 out of 1400
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 09:20:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017125.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017125hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwl_A Actin-related protein 3 100.0 8.2E-82 2.8E-86 604.4 24.6 370 5-377 3-422 (427)
2 3qb0_A Actin-related protein 4 100.0 1.8E-79 6E-84 593.0 28.7 365 3-376 19-497 (498)
3 2fxu_A Alpha-actin-1, actin, a 100.0 2.6E-77 8.8E-82 568.8 32.8 374 4-377 2-375 (375)
4 1k8k_B ARP2, actin-like protei 100.0 1.9E-76 6.3E-81 565.7 16.3 371 4-374 3-388 (394)
5 4fo0_A Actin-related protein 8 100.0 1.6E-72 5.6E-77 567.0 23.8 370 7-377 15-590 (593)
6 1k8k_A ARP3, actin-like protei 100.0 4.1E-71 1.4E-75 534.0 29.5 370 5-376 3-412 (418)
7 4am6_A Actin-like protein ARP8 100.0 2.7E-59 9.2E-64 454.7 27.2 363 4-377 37-652 (655)
8 1jce_A ROD shape-determining p 100.0 5.4E-36 1.8E-40 281.5 18.8 307 8-355 4-330 (344)
9 2v7y_A Chaperone protein DNAK; 99.9 2.5E-26 8.5E-31 226.1 8.2 297 8-351 3-350 (509)
10 3h1q_A Ethanolamine utilizatio 99.9 2.5E-24 8.4E-29 195.3 16.8 244 7-349 28-272 (272)
11 1dkg_D Molecular chaperone DNA 99.9 1.9E-24 6.5E-29 205.7 12.0 304 8-351 3-381 (383)
12 3qfu_A 78 kDa glucose-regulate 99.9 5E-24 1.7E-28 203.5 11.7 299 7-351 18-392 (394)
13 3i33_A Heat shock-related 70 k 99.9 8.4E-23 2.9E-27 195.7 10.5 300 6-351 22-400 (404)
14 2kho_A Heat shock protein 70; 99.8 8.8E-21 3E-25 189.9 12.6 298 8-351 3-381 (605)
15 1yuw_A Heat shock cognate 71 k 99.8 4E-20 1.4E-24 183.4 16.8 216 102-351 139-379 (554)
16 3d2f_A Heat shock protein homo 99.8 3.5E-20 1.2E-24 187.1 12.2 213 103-351 139-382 (675)
17 4gni_A Putative heat shock pro 99.8 2.5E-20 8.5E-25 178.8 9.4 238 82-352 129-401 (409)
18 4b9q_A Chaperone protein DNAK; 99.8 5.6E-19 1.9E-23 176.9 10.0 302 8-351 3-381 (605)
19 2ych_A Competence protein PILM 99.7 1.3E-17 4.5E-22 158.1 14.2 172 118-320 153-331 (377)
20 2fsj_A Hypothetical protein TA 99.7 4.7E-18 1.6E-22 158.9 8.3 178 9-198 23-240 (346)
21 4a2a_A Cell division protein F 99.7 1.9E-16 6.6E-21 151.3 15.0 200 115-352 167-394 (419)
22 2zgy_A Plasmid segregation pro 99.6 7E-15 2.4E-19 136.1 9.0 178 127-350 136-320 (320)
23 4apw_A ALP12; actin-like prote 99.5 1.3E-14 4.3E-19 134.7 4.6 286 3-351 3-324 (329)
24 3js6_A Uncharacterized PARM pr 99.4 1.7E-13 5.7E-18 128.2 8.2 185 8-198 5-232 (355)
25 2d0o_A DIOL dehydratase-reacti 99.0 4.4E-10 1.5E-14 106.9 8.1 181 138-349 390-602 (610)
26 1nbw_A Glycerol dehydratase re 99.0 4.2E-10 1.4E-14 107.4 6.9 180 138-348 392-603 (607)
27 4ehu_A Activator of 2-hydroxyi 98.6 3.8E-08 1.3E-12 88.7 6.7 172 133-351 73-254 (276)
28 1hux_A Activator of (R)-2-hydr 97.8 5.7E-05 2E-09 67.5 9.2 47 297-351 210-256 (270)
29 1t6c_A Exopolyphosphatase; alp 96.9 0.002 6.8E-08 58.7 7.2 76 114-192 95-178 (315)
30 2gup_A ROK family protein; sug 96.7 0.0059 2E-07 54.8 9.3 51 121-174 87-142 (292)
31 2ews_A Pantothenate kinase; PA 96.4 0.02 6.8E-07 51.1 10.5 52 294-350 235-287 (287)
32 3mdq_A Exopolyphosphatase; str 96.4 0.0015 5.2E-08 59.5 3.3 73 116-191 89-170 (315)
33 3vgl_A Glucokinase; ROK family 96.1 0.084 2.9E-06 47.9 13.1 46 127-174 94-146 (321)
34 4db3_A Glcnac kinase, N-acetyl 96.1 0.042 1.4E-06 50.1 11.0 53 298-350 272-325 (327)
35 3cer_A Possible exopolyphospha 96.0 0.0032 1.1E-07 58.0 2.9 75 116-191 102-191 (343)
36 1u6z_A Exopolyphosphatase; alp 95.8 0.024 8.1E-07 55.2 8.5 73 116-191 96-176 (513)
37 3hi0_A Putative exopolyphospha 95.7 0.043 1.5E-06 53.3 9.9 73 115-190 99-178 (508)
38 3r8e_A Hypothetical sugar kina 95.7 0.042 1.4E-06 50.0 9.1 46 127-174 115-168 (321)
39 4htl_A Beta-glucoside kinase; 95.4 0.31 1.1E-05 43.5 14.0 52 298-351 240-291 (297)
40 3vov_A Glucokinase, hexokinase 95.3 0.13 4.4E-06 46.2 10.9 54 298-351 240-295 (302)
41 2qm1_A Glucokinase; alpha-beta 95.1 0.062 2.1E-06 48.8 8.4 46 127-174 106-158 (326)
42 2i7n_A Pantothenate kinase 1; 95.1 0.063 2.1E-06 49.3 8.1 56 292-349 302-358 (360)
43 3cet_A Conserved archaeal prot 93.6 0.039 1.3E-06 49.8 3.2 25 150-174 127-151 (334)
44 2ch5_A NAGK protein; transfera 93.2 1.1 3.8E-05 40.7 12.6 91 81-172 49-143 (347)
45 2ap1_A Putative regulator prot 93.2 0.21 7.3E-06 45.3 7.6 46 127-174 118-170 (327)
46 3djc_A Type III pantothenate k 93.1 0.61 2.1E-05 41.0 10.1 18 9-26 4-21 (266)
47 2yhw_A Bifunctional UDP-N-acet 93.0 0.33 1.1E-05 44.3 8.7 46 127-174 129-181 (343)
48 2h3g_X Biosynthetic protein; p 91.6 0.86 3E-05 40.0 9.2 18 9-26 2-19 (268)
49 3zx3_A Ectonucleoside triphosp 89.7 1.2 4.1E-05 42.2 8.8 89 82-171 89-202 (452)
50 3bex_A Type III pantothenate k 89.2 2.2 7.7E-05 36.9 9.6 24 149-173 121-144 (249)
51 1zbs_A Hypothetical protein PG 85.6 5 0.00017 35.4 10.0 69 104-173 62-132 (291)
52 1zc6_A Probable N-acetylglucos 74.0 29 0.00098 30.5 11.0 89 81-173 53-145 (305)
53 1z6r_A MLC protein; transcript 74.0 10 0.00035 35.1 8.3 46 127-174 184-236 (406)
54 1z05_A Transcriptional regulat 73.6 6.2 0.00021 37.0 6.7 46 127-174 206-258 (429)
55 3aap_A Ectonucleoside triphosp 67.4 3.6 0.00012 37.7 3.4 36 150-185 140-177 (353)
56 2aa4_A Mannac kinase, putative 64.5 20 0.00067 31.2 7.7 51 298-349 236-286 (289)
57 2f9w_A Pantothenate kinase; CO 63.7 19 0.00065 31.4 7.2 17 9-25 25-41 (271)
58 2aa4_A Mannac kinase, putative 60.8 3.6 0.00012 36.1 2.1 48 124-174 91-145 (289)
59 2e2o_A Hexokinase; acetate and 60.5 68 0.0023 27.9 10.5 55 104-160 62-117 (299)
60 3mcp_A Glucokinase; structural 58.7 59 0.002 29.6 9.9 133 1-176 3-173 (366)
61 1zxo_A Conserved hypothetical 58.3 8.2 0.00028 34.0 4.0 68 105-173 61-130 (291)
62 2hoe_A N-acetylglucosamine kin 52.9 8.2 0.00028 35.5 3.1 46 127-174 186-236 (380)
63 3epq_A Putative fructokinase; 49.7 11 0.00038 33.4 3.4 68 276-350 212-288 (302)
64 2yhx_A Hexokinase B; transfera 49.3 13 0.00046 35.1 4.0 52 298-352 386-443 (457)
65 1saz_A Probable butyrate kinas 48.4 44 0.0015 30.6 7.4 51 297-351 297-348 (381)
66 3htv_A D-allose kinase, alloki 42.9 19 0.00066 31.9 3.9 60 298-357 242-305 (310)
67 1saz_A Probable butyrate kinas 37.2 22 0.00076 32.6 3.4 54 120-175 111-200 (381)
68 3eno_A Putative O-sialoglycopr 36.0 22 0.00074 32.1 3.1 27 296-322 250-276 (334)
69 2e2o_A Hexokinase; acetate and 34.7 13 0.00044 32.7 1.3 46 298-351 242-287 (299)
70 1bdg_A Hexokinase; phosphotran 31.9 32 0.0011 32.4 3.6 50 299-351 396-446 (451)
71 3cj1_A Ectonucleoside triphosp 31.5 36 0.0012 32.1 3.8 22 150-171 190-211 (456)
72 3djc_A Type III pantothenate k 31.0 91 0.0031 26.9 6.1 49 152-200 4-53 (266)
73 2q2r_A Glucokinase 1, putative 30.6 13 0.00046 33.9 0.7 52 122-174 120-205 (373)
74 2itm_A Xylulose kinase, xylulo 30.4 26 0.0009 33.2 2.8 48 296-351 387-434 (484)
75 3qbx_A Anhydro-N-acetylmuramic 30.4 15 0.00051 33.6 0.9 23 297-319 285-307 (371)
76 2ivn_A O-sialoglycoprotein end 29.0 24 0.00082 31.7 2.1 35 296-335 245-279 (330)
77 1cza_N Hexokinase type I; stru 27.5 24 0.0008 36.7 2.0 51 297-351 408-459 (917)
78 3cqy_A Anhydro-N-acetylmuramic 27.1 17 0.00059 33.2 0.7 23 297-319 291-313 (370)
79 2zf5_O Glycerol kinase; hypert 27.1 53 0.0018 31.2 4.3 47 296-351 394-440 (497)
80 4g9i_A Hydrogenase maturation 25.9 23 0.0008 35.9 1.5 27 296-322 706-732 (772)
81 2yrb_A Protein fantom; beta sa 24.7 26 0.00088 27.7 1.2 68 129-199 22-90 (156)
82 3hm8_A Hexokinase-3; glucose, 23.8 55 0.0019 30.7 3.5 41 307-351 396-436 (445)
83 2e1z_A Propionate kinase; TDCD 23.6 38 0.0013 31.4 2.4 27 1-27 12-38 (415)
84 2w40_A Glycerol kinase, putati 22.5 74 0.0025 30.2 4.3 46 297-351 409-454 (503)
85 2dpn_A Glycerol kinase; thermu 22.5 48 0.0016 31.5 3.0 46 297-351 400-445 (495)
86 4e1j_A Glycerol kinase; struct 21.5 52 0.0018 31.5 3.0 47 296-351 426-472 (520)
87 3hz6_A Xylulokinase; xylulose, 21.3 37 0.0013 32.5 1.9 47 296-351 403-450 (511)
88 3vgl_A Glucokinase; ROK family 21.1 1.6E+02 0.0055 25.8 6.1 54 298-351 255-312 (321)
89 4e1j_A Glycerol kinase; struct 20.8 80 0.0027 30.2 4.2 33 130-162 257-291 (520)
No 1
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.2e-82 Score=604.38 Aligned_cols=370 Identities=37% Similarity=0.674 Sum_probs=322.2
Q ss_pred CCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCC----------------------CccccCCCccceeccchhc
Q 017125 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHT----------------------GVMVGMGQKDAYVGDEAQS 62 (377)
Q Consensus 5 ~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~----------------------~~~~~~~~~~~~vg~~~~~ 62 (377)
.+.++||||+||+++|+||+|++.|+++|||+++++++. ..+.+..+.+.+||+++..
T Consensus 3 ~~~~~iViDnGs~~~KaG~ag~~~P~~v~Ps~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ea~~ 82 (427)
T 3dwl_A 3 SFNVPIIMDNGTGYSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKGSGHLSSKRATEDLDFFIGNDALK 82 (427)
T ss_dssp CCCSCEEECCCSSBC-CEETTSSSCSCCCBCCEECC------------------------------CCSSCCEETHHHHH
T ss_pred CCCCeEEEECCCCeEEEEECCCCCCCCcCCceEEeecccccccccccccccccccccccccccccCcccCCeEEchHHhh
Confidence 367899999999999999999999999999999998754 1122445668899999988
Q ss_pred ccC-cceeeccccCCccCCHHHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhh
Q 017125 63 KRG-ILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV 141 (377)
Q Consensus 63 ~~~-~~~~~~p~~~g~i~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~ 141 (377)
... ...+++|+++|.|.|||.+|++|+|+|++.|+++++++|+++++|+++++..|+++++++||.|++++++++.+++
T Consensus 83 ~~~~~l~~~~Pi~~GvI~dwd~~e~iw~~~~~~~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~v 162 (427)
T 3dwl_A 83 KASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAV 162 (427)
T ss_dssp THHHHCCCCCSEETTEECCHHHHHHHHHHHHHTTSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHH
T ss_pred CcccCcEEecCcccCeeccHHHHHHHHHHHHhHhhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHH
Confidence 764 6789999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcC--------CceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHH
Q 017125 142 LSLYASG--------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRD 213 (377)
Q Consensus 142 ~a~~~~g--------~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ 213 (377)
+|+|++| .++|+|||+|+++|+|+||++|+++.++.+++++||++++++|.++|++++.. ..+.+.+++
T Consensus 163 la~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~---~~~~~~~~~ 239 (427)
T 3dwl_A 163 LALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEP---DSSLKTAER 239 (427)
T ss_dssp HHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC-----------CHHHHH
T ss_pred HHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHHHcCCC---chhHHHHHH
Confidence 9999998 68999999999999999999999999999999999999999999999887765 345688999
Q ss_pred HHHhcceeccCHHHHHHHhccCCCcceEEEc--CCCc--EEecCCccccccccCCCCccCCCC-CCChHHHHHHHHhcCC
Q 017125 214 MKEKLAYIALDYEQELETAKISSAVEKSYEL--PDGQ--VITIGAERFRCPEVLFQPSMIGME-SAGIHETTYNSIMKCD 288 (377)
Q Consensus 214 ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l--pd~~--~i~i~~~~~~~~E~lf~p~~~~~~-~~~l~~~I~~~i~~~~ 288 (377)
+|+++|||+.+++++++.........+.|.+ |||. .+.++.+||++||+||+|++++.+ ..+|+++|.++|.+||
T Consensus 240 IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI~~c~ 319 (427)
T 3dwl_A 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSP 319 (427)
T ss_dssp HHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHHHTSC
T ss_pred HHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHHHhCC
Confidence 9999999999998888765433333456777 8887 889999999999999999999988 4899999999999999
Q ss_pred hhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhC--------------CCCceEEEECCCCCccccchhhhhhhccccc
Q 017125 289 VDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALA--------------PSSMKIKVVAPPERKYSVWIGGSILASLSTF 354 (377)
Q Consensus 289 ~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~--------------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~ 354 (377)
+|+|+.|++||||+||+|++|||.+||++||+.+. |...+++|..+++|.+++|+||||+|++++|
T Consensus 320 ~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilasl~~f 399 (427)
T 3dwl_A 320 IDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEF 399 (427)
T ss_dssp HHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHHSTTH
T ss_pred HHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeeccccch
Confidence 99999999999999999999999999999999887 4566799999999999999999999999999
Q ss_pred ccccccHHHHhhcCCcccccccC
Q 017125 355 QQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 355 ~~~~itr~ey~e~G~~~~~~k~~ 377 (377)
+++||||+||+|+|+++|+|+++
T Consensus 400 ~~~witk~EYeE~G~~iv~~~~~ 422 (427)
T 3dwl_A 400 GSYCHTKADYEEYGASIARRYQI 422 (427)
T ss_dssp HHHSEEHHHHHHSCGGGGSCCCC
T ss_pred hheeEEHHHHhhhChHhheeccc
Confidence 99999999999999999999974
No 2
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-79 Score=593.01 Aligned_cols=365 Identities=31% Similarity=0.577 Sum_probs=331.0
Q ss_pred CCCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccc-hhcccCcceeeccccCCccCCH
Q 017125 3 DAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDE-AQSKRGILTLKYPIEHGIVNNW 81 (377)
Q Consensus 3 ~~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~-~~~~~~~~~~~~p~~~g~i~d~ 81 (377)
.+++..+||||+||++||+||+|++.|++++||+++++++.. ++..+||++ +...++...+++|+++|.|.||
T Consensus 19 ggde~~~iVID~GS~~~kaG~ag~~~P~~v~PSvVg~~~~~~------~~~~~vG~e~~~~~r~~l~l~~Pi~~GvI~dw 92 (498)
T 3qb0_A 19 GGDEVSAVVIDPGSYTTNIGYSGSDFPQSILPSVYGKYTADE------GNKKIFSEQSIGIPRKDYELKPIIENGLVIDW 92 (498)
T ss_dssp CCCCBSCEEEECCSSEEEEEETTCSSCSEEEESEEEEESSCS------SCCEECCTTGGGSCCTTEEEEESEETTEESCH
T ss_pred CCCCCCeEEEECCCcEEEEEECCCCCeeeecCceeEEeccCC------CccEEEecHHHhcCcCceEEeccCcCCEEccH
Confidence 567889999999999999999999999999999999987542 456789997 5555677889999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCC-cEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCC
Q 017125 82 DDMEKIWHHTFYNELRVAPEEH-PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG 160 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~~~~~~-~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~ 160 (377)
+.+|.+|+|+|.+.|++.+.++ ||+|++|++++...|+++++++||.|++++++++.+++||+|++|+++|+|||+|++
T Consensus 93 d~~E~iw~~~f~~~L~v~p~~~~pvlltep~~n~~~~Re~~~eilFE~f~vpav~l~~~~vlalya~G~~tglVVDiG~g 172 (498)
T 3qb0_A 93 DTAQEQWQWALQNELYLNSNSGIPALLTEPVWNSTENRKKSLEVLLEGMQFEACYLAPTSTCVSFAAGRPNCLVVDIGHD 172 (498)
T ss_dssp HHHHHHHHHHHHHTSCCSCCTTCCEEEEECTTCCHHHHHHHHHHHHTTSCCSEEEEEEHHHHHHHHHTCSSEEEEEECSS
T ss_pred HHHHHHHHHHHHhhhCCCcccCCceEEEeCCCCcHHHHHHHHHHHHhhcCCCeEeecchHHHHHHHcCCCeEEEEEcCCC
Confidence 9999999999988899999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHc------------------CCCCcCh------h-HHHHHHHHH
Q 017125 161 VSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER------------------GYSFTTT------A-EREIVRDMK 215 (377)
Q Consensus 161 ~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~------------------~~~~~~~------~-~~~~~~~ik 215 (377)
.|+|+||++|+++.++..++++||++++++|.++|+++ ++.+... . +.+.++++|
T Consensus 173 ~T~vvPI~~G~~l~~ai~rl~vgG~~lt~~L~~lL~~~~i~P~~~i~~k~~~~~~~~~~~~~~~s~~~~~~~~~iv~~iK 252 (498)
T 3qb0_A 173 TCSVSPIVDGMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDYANNRGFFQECK 252 (498)
T ss_dssp CEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHTTTSCCCCSTTEEECSSSCEECCCSSCCCHHHHHHHHHHTHHHHHH
T ss_pred cEEEEEEeCCEEccccceeccccHHHHHHHHHHHHHhccccchhhhcccccccccccCCCccCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999864 3333221 1 345899999
Q ss_pred HhcceeccC--HHHHHHHhccCCCcceEEEcCCCcEEecCCc-cccccccCCCCccCCC---------------------
Q 017125 216 EKLAYIALD--YEQELETAKISSAVEKSYELPDGQVITIGAE-RFRCPEVLFQPSMIGM--------------------- 271 (377)
Q Consensus 216 ~~~~~v~~~--~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~-~~~~~E~lf~p~~~~~--------------------- 271 (377)
+++|+|+.+ ++++... ......+.|++|||+.|.++.+ ||++||.||+|++++.
T Consensus 253 E~~c~Va~~~~~~~~~~~--~~~~~~~~yeLPDG~~i~lg~E~Rf~~pE~LF~P~~~g~~~~~~~~~~~~~~~~~~~y~~ 330 (498)
T 3qb0_A 253 ETLCHICPTKTLEETKTE--LSSTAKRSIESPWNEEIVFDNETRYGFAEELFLPKEDDIPANWPRSNSGVVKTWRNDYVP 330 (498)
T ss_dssp HHTCCCCSSCHHHHHHHH--HHTCCCEEEECSSSCEEEECHHHHHHHHHTTTSCCGGGSCTTSCCCSSSCCCCCSCCCCC
T ss_pred HhhEEecCCccHhHHhhh--ccCcCceEEECCCCCEEEECchHhhhCchhhCCHhHcCCccccccccccccccccccccc
Confidence 999999987 4443222 2234578999999999999999 9999999999987643
Q ss_pred -----------------------------------------------------------CCCChHHHHHHHHhcCChhHH
Q 017125 272 -----------------------------------------------------------ESAGIHETTYNSIMKCDVDIR 292 (377)
Q Consensus 272 -----------------------------------------------------------~~~~l~~~I~~~i~~~~~~~~ 292 (377)
+..||+++|.++|.+||.|+|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~e~i~~sI~~cd~d~r 410 (498)
T 3qb0_A 331 LKRTKPSGVNKSDKKVTPTEEKEQEAVSKSTSPAANSADTPNETGKRPLEEEKPPKENNELIGLADLVYSSIMSSDVDLR 410 (498)
T ss_dssp CCBCC-----------------------------------------------------CCSCCHHHHHHHHHHTSCTTTH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCchHHHHHHHHhCCHHHH
Confidence 567999999999999999999
Q ss_pred HHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECC---CCCccccchhhhhhhcccccccccccHHHHhhcCC
Q 017125 293 KDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWIAKAEYDESGP 369 (377)
Q Consensus 293 ~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~---~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~ 369 (377)
+.|++||||+||+|++|||.+||++||+.+.| ..+++|..+ ++|.+++|+||||+|++.+|+++||||+||+|+|+
T Consensus 411 ~~L~~nIvLsGGst~~pGf~~Rl~~El~~l~p-~~~i~v~~~~~~~er~~s~WiGgsilasl~~f~~~witk~EY~E~G~ 489 (498)
T 3qb0_A 411 ATLAHNVVLTGGTSSIPGLSDRLMTELNKILP-SLKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGV 489 (498)
T ss_dssp HHHHTTEEEESGGGGSTTHHHHHHHHHHHHST-TSCCCEECCSCTGGGGSHHHHHHHHHHTCHHHHHTSEEHHHHHTTCC
T ss_pred HHHhcCEEEeCCccCchhHHHHHHHHHHHhCC-CCeeEEEcCCCCCccCccEEcccEEEecCcchhceEEEHHHHhhhCc
Confidence 99999999999999999999999999999999 789999987 68999999999999999999999999999999999
Q ss_pred -ccccccc
Q 017125 370 -SIVHRKC 376 (377)
Q Consensus 370 -~~~~~k~ 376 (377)
.+|+|||
T Consensus 490 ~~iv~~kc 497 (498)
T 3qb0_A 490 ERLLNDRF 497 (498)
T ss_dssp HHHHHHTT
T ss_pred HhhccccC
Confidence 9999998
No 3
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...
Probab=100.00 E-value=2.6e-77 Score=568.81 Aligned_cols=374 Identities=88% Similarity=1.389 Sum_probs=342.9
Q ss_pred CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHH
Q 017125 4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDD 83 (377)
Q Consensus 4 ~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~ 83 (377)
.++.++||||+||+++|+||++++.|++++||+++++++...+.+.+.++.+||+++....+...+++|+++|.+.||+.
T Consensus 2 ~~~~~~ivID~Gs~~~k~G~~~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~~~~~~~~Pi~~G~i~d~d~ 81 (375)
T 2fxu_A 2 EDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDD 81 (375)
T ss_dssp --CCCCEEEEECSSEEEEEETTCSSCSEEEECCEEEECTTTC-------CCEEHHHHHHHTTSEEEECSEETTEECCHHH
T ss_pred CCCCceEEEECCCCeEEEEECCCCCCceeeccccccccccccccCCCCCCeEechhHhhcCcccceeccccCCcccCHHH
Confidence 46788999999999999999999999999999999998876555555678899999988888889999999999999999
Q ss_pred HHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceE
Q 017125 84 MEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 163 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~ 163 (377)
++.+|+|+|++.|+.+++++++++++|+.++..+|+++++++||.+|+++++++++|+||+|++|.++++|||+|+++|+
T Consensus 82 ~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~~~~lVvDiG~gtt~ 161 (375)
T 2fxu_A 82 MEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTH 161 (375)
T ss_dssp HHHHHHHHHHTTSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTCSSEEEEEECSSCEE
T ss_pred HHHHHHHHHHHhcCCCCcCCcEEEEeCCCCcHHHHHHHHHHHHHhcCcceEEEccchheeeeecCCCeEEEEEcCCCceE
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEE
Q 017125 164 TVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYE 243 (377)
Q Consensus 164 v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 243 (377)
|+||++|.++.++..++++||++++++|.++|..+++++....+.+.++++|+++|++..++.++++...........|.
T Consensus 162 v~~v~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~ 241 (375)
T 2fxu_A 162 NVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 241 (375)
T ss_dssp EEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEE
T ss_pred EeEeECCEEeccceEEeccCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEE
Confidence 99999999998888899999999999999999988888876667889999999999999998887766554455678999
Q ss_pred cCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhC
Q 017125 244 LPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALA 323 (377)
Q Consensus 244 lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~ 323 (377)
+|||+.+.++.+||.++|.||+|.+++.+..+|.++|.++|.+||.++|+.+++|||||||+|++|||.+||++||..+.
T Consensus 242 lpdg~~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~ 321 (375)
T 2fxu_A 242 LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALA 321 (375)
T ss_dssp CTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHS
T ss_pred CCCCCEEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125 324 PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 324 ~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 377 (377)
|...++++..+++|.+++|+||+++|++..|+++||||+||+|+|+++++||||
T Consensus 322 p~~~~v~v~~~~~p~~~~w~G~si~a~l~~f~~~~itk~ey~e~G~~~~~~k~~ 375 (375)
T 2fxu_A 322 PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 375 (375)
T ss_dssp CTTCCCCEECCTTTTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC----
T ss_pred CCCeeEEEEcCCCCCccEEcchHHhhCcccHhhceeeHHHHhhhChHHHhhhcc
Confidence 988889999999999999999999999999999999999999999999999997
No 4
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*
Probab=100.00 E-value=1.9e-76 Score=565.71 Aligned_cols=371 Identities=47% Similarity=0.883 Sum_probs=164.9
Q ss_pred CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCcc-c-cCCCccceeccchhcccCcceeeccccCCccCCH
Q 017125 4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM-V-GMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNW 81 (377)
Q Consensus 4 ~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~-~-~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~ 81 (377)
+.+.++||||+||+++|+||++++.|++++||+++++++.... . +...++.+||+++...++...+++|+++|.+.||
T Consensus 3 ~~~~~~ivID~Gs~~~k~G~ag~~~P~~~~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~~~~Pi~~G~i~dw 82 (394)
T 1k8k_B 3 SQGRKVVVCDNGTGFVKCGYAGSNFPEHIFPALVGRPIIRSTTKVGNIEIKDLMVGDEASELRSMLEVNYPMENGIVRNW 82 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCEEEEECCCCeEEEeeCCCCCcceeccceeEEEcccccccccCCCCCCeEEChHHHhcCCCceeeccccCCEEecH
Confidence 4567899999999999999999999999999999998765432 1 2334678999999888777889999999999999
Q ss_pred HHHHHHHHHhc-ccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCC
Q 017125 82 DDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG 160 (377)
Q Consensus 82 ~~~~~~~~~~~-~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~ 160 (377)
+.++.+|+|+| ++.|+++++++++++++|+.++...|+++++++||.+++++++++++|+||+|++|.++++|||+|++
T Consensus 83 d~~e~i~~~~~~~~~L~~~~~~~~vllt~p~~~~~~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~~~~lVVDiG~g 162 (394)
T 1k8k_B 83 DDMKHLWDYTFGPEKLNIDTRNCKILLTEPPMNPTKNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGLLTGVVVDSGDG 162 (394)
T ss_dssp -----------------------------------------------------------------------CCEEEECSS
T ss_pred HHHHHHHHHHhcccccCcCCCCCcEEEEECCCCCHHHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCCceEEEEEcCCC
Confidence 99999999999 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcce
Q 017125 161 VSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEK 240 (377)
Q Consensus 161 ~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~ 240 (377)
+|+|+||++|+++.++..++++||++++++|.++|..+++++....+.+.++++|+++|+++.++..+++..........
T Consensus 163 ~T~v~pv~~G~~~~~~~~~~~~GG~~lt~~l~~~l~~~~~~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~ 242 (394)
T 1k8k_B 163 VTHICPVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVE 242 (394)
T ss_dssp CEEEECEETTEECSTTCEEESCCHHHHHHHHHHHHHHTTCCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCE
T ss_pred ceEeeeeECCEEcccceEEeeccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhheeEecCHHHHHHhhccCCcCce
Confidence 99999999999999888999999999999999999998888876667789999999999999988777765444445567
Q ss_pred EEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHH
Q 017125 241 SYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIT 320 (377)
Q Consensus 241 ~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~ 320 (377)
.|.+|||+.+.++.+||.++|+||+|++++.+..+|+++|.++|.+||.++|+.+++|||||||+|++|||.+||++||.
T Consensus 243 ~~~lpdg~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~ 322 (394)
T 1k8k_B 243 SYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELK 322 (394)
T ss_dssp EEECTTSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHH
T ss_pred EEECCCCCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhC-----------CCCceEEEECCCCCccccchhhhhhhcccccc-cccccHHHHhhcCCccccc
Q 017125 321 ALA-----------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQ-QMWIAKAEYDESGPSIVHR 374 (377)
Q Consensus 321 ~~~-----------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~-~~~itr~ey~e~G~~~~~~ 374 (377)
.+. |...+++|..+++|.+++|+|||++|++.+|+ ++||||+||+|+|+++++|
T Consensus 323 ~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~~itk~eY~e~G~~~~~~ 388 (394)
T 1k8k_B 323 QLYLERVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEK 388 (394)
T ss_dssp HHHHHHTCSSCCCTTCCCCC----------------------------------------------
T ss_pred HHHhhhhcccccCCCCceEEEEecCCCcceeEEhhhHHhhCCcCCccceeecHHHHhhhCHHHHHh
Confidence 987 77778999989999999999999999999999 9999999999999999987
No 5
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.6e-72 Score=566.97 Aligned_cols=370 Identities=21% Similarity=0.380 Sum_probs=293.9
Q ss_pred CCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCcc----------------------------------------
Q 017125 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVM---------------------------------------- 46 (377)
Q Consensus 7 ~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~---------------------------------------- 46 (377)
+++||||+||+++|+|||||+.|. .+|+++++++.....
T Consensus 15 ~~iIVIdpGS~~~riG~A~d~~P~-~iP~~iar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (593)
T 4fo0_A 15 NFIIVIHPGSTTLRIGRATDTLPA-SIPHVIARRHKQQGQPLYKDSWLLREGLNKPESNEQRQNGLKMVDQAIWSKKMSN 93 (593)
T ss_dssp GGEEEEECCSSEEEEEETTCSSCE-EEECCEEEECSSTTCCCCBCCSSCCTTTTSTTHHHHHHHHHHHHHHHHHHSCCTT
T ss_pred CCEEEEeCCCCCeEeeecCCCCCC-eeeEEEEEECCCCCCCcccccccccccccccchhhhhhhhHHHHHHHHHHHhhhc
Confidence 458999999999999999999997 569999987532110
Q ss_pred ---------------------------------ccCCCccceeccchhcc--cCcceeeccccCC-----------ccCC
Q 017125 47 ---------------------------------VGMGQKDAYVGDEAQSK--RGILTLKYPIEHG-----------IVNN 80 (377)
Q Consensus 47 ---------------------------------~~~~~~~~~vg~~~~~~--~~~~~~~~p~~~g-----------~i~d 80 (377)
.....++++||++|+.. .+.+.++||+++| .+.+
T Consensus 94 ~~r~~~~s~~~~~~~n~~~~p~~i~~~~~~~~~~~~~~~~~~vG~~al~~~~~~~~~l~~Pi~~G~~n~~~~~~~s~~~~ 173 (593)
T 4fo0_A 94 GTRRIPVSPEQARSYNKQMRPAILDHCSGNKWTNTSHHPEYLVGEEALYVNPLDCYNIHWPIRRGQLNIHPGPGGSLTAV 173 (593)
T ss_dssp SCCCCCCCHHHHHHHHTTCCCEEEESSCSCCCCCCTTCCSEEETHHHHTSCTTSSEEEECSEETTEECCCSSTTCSHHHH
T ss_pred ccccCCCcHHHhhhhhccCCCcccCCCCccccccccccccccccHHHhhcCCcccceEecCcccCccccccCCccchhcC
Confidence 01123567999999754 5678999999999 4679
Q ss_pred HHHHHHHHHHhcccccccCCCC---CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeC
Q 017125 81 WDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 157 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~L~~~~~~---~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDi 157 (377)
|+++|.+|+|+|.+.|++.+++ ++|||++|+++++..|+++++++||+|+++++++..+++||+|++|++||||||+
T Consensus 174 wdd~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~tglVVDi 253 (593)
T 4fo0_A 174 LADIEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLSSTCIVDV 253 (593)
T ss_dssp HHHHHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCCceEEEEe
Confidence 9999999999998999998765 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcC-----hhHHHHHHHHHHhcceeccCHHHHH---
Q 017125 158 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTT-----TAEREIVRDMKEKLAYIALDYEQEL--- 229 (377)
Q Consensus 158 G~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~-----~~~~~~~~~ik~~~~~v~~~~~~~~--- 229 (377)
|++.|+|+||+||+++.++..++++||++++++|.++|+.+++.+.. ..+..+++++|+++|+++.++..+.
T Consensus 254 G~~~T~v~PV~dG~~l~~~~~rl~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~d~~~v~~iKe~~c~v~~d~~~~~~~~ 333 (593)
T 4fo0_A 254 GDQKTSVCCVEDGVSHRNTRLCLAYGGSDVSRCFYWLMQRAGFPYRECQLTNKMDCLLLQHLKETFCHLDQDISGLQDHE 333 (593)
T ss_dssp CSSCEEEEEEESSCBCGGGCEEESCCHHHHHHHHHHHHHHTTCSCTTCCTTCHHHHHHHHHHHHHHCBCCTTCCSCEEEE
T ss_pred CCCceeeeeeECCEEehhheEEecccHHHHHHHHHHHHHhcCCCccccccccchhHHHHHHHHHHhcccccchHHhhhhh
Confidence 99999999999999999999999999999999999999998876543 4578899999999999986642110
Q ss_pred ----------------------H----H------------------------------------------hccCCCcceE
Q 017125 230 ----------------------E----T------------------------------------------AKISSAVEKS 241 (377)
Q Consensus 230 ----------------------~----~------------------------------------------~~~~~~~~~~ 241 (377)
. . ..........
T Consensus 334 ~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (593)
T 4fo0_A 334 FQIRHPDSPALLYQFRLGDEKLQAPMALFYPATFGIVGQKMTTLQHRSQGDPEDPHDEHYLLATQSKQEQSAKATADRKS 413 (593)
T ss_dssp EEECCTTSCEEEEEEEECTHHHHHHHTTTSGGGGCCCSSCCEEECC----------------------------------
T ss_pred hhcccCCCCceeeEEeccchhhcCchhhcChhhhcccccccchhhhhcccCcccchhhhhhhhcccchhhhhhccccccc
Confidence 0 0 0000112346
Q ss_pred EEcCCCcEEecCCccccccccCCCCccC--------------------------------CCCCCChHHHHHHHHhcCC-
Q 017125 242 YELPDGQVITIGAERFRCPEVLFQPSMI--------------------------------GMESAGIHETTYNSIMKCD- 288 (377)
Q Consensus 242 ~~lpd~~~i~i~~~~~~~~E~lf~p~~~--------------------------------~~~~~~l~~~I~~~i~~~~- 288 (377)
+..|++..+.++.+++.++|.+|.|+.. +.+..+|+++|.++|.+|+
T Consensus 414 ~~~p~g~~~~~~~e~~~~pe~lf~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gL~~aI~~SI~~~~~ 493 (593)
T 4fo0_A 414 ASKPIGFEGDLRGQSSDLPERLHSQEVDLGSAQGDGLMAGNDSEEALTALMSRKTAISLFEGKALGLDKAILHSIDCCSS 493 (593)
T ss_dssp ---------------------------------------------------------CHHHHSCCCHHHHHHHHHHTCSS
T ss_pred ccCCCCcccccccccccCchhccCcccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhCCc
Confidence 7789999999999999999999998642 1235689999999999998
Q ss_pred hhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCc-----eEEEECCC---CCccccchhhhhhhccccccccccc
Q 017125 289 VDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSM-----KIKVVAPP---ERKYSVWIGGSILASLSTFQQMWIA 360 (377)
Q Consensus 289 ~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~-----~v~v~~~~---~~~~~~w~Gasi~a~l~~~~~~~it 360 (377)
.|.|+.|++|||||||+|++|||.+||++||..+.|... +++|+.++ ||.+++|+||||+|++++|+++|||
T Consensus 494 ~D~r~~L~~NIvltGG~s~~pGf~~RL~~eL~~~~p~~~~~~~~~v~v~~~p~~~d~~~~aW~GgSilasL~~f~~~wIt 573 (593)
T 4fo0_A 494 DDTKKKMYSSILVVGGGLMFHKAQEFLQHRILNKMPPSFRRIIENVDVITRPKDMDPRLIAWKGGAVLACLDTTQELWIY 573 (593)
T ss_dssp HHHHHHHHHEEEEESSTTCCBTHHHHHHHHHHHHSCHHHHHHSSCCEEESSGGGCCTTTHHHHHHHHHHHCGGGGGTCEE
T ss_pred HHHHHHHhCCEEEEchhhchhcHHHHHHHHHHHhCcchhccccceEEEECCCCCCCCceeeehhhHHHhcCccHHHeeEC
Confidence 699999999999999999999999999999999998643 58999886 8999999999999999999999999
Q ss_pred HHHHhhcCCcccccccC
Q 017125 361 KAEYDESGPSIVHRKCF 377 (377)
Q Consensus 361 r~ey~e~G~~~~~~k~~ 377 (377)
|+||+|+|+++|++||+
T Consensus 574 k~EYeE~G~~il~~kc~ 590 (593)
T 4fo0_A 574 QREWQRFGVRMLRERAA 590 (593)
T ss_dssp HHHHHHHTTHHHHHHCS
T ss_pred HHHHHhhCcHHHhhcCC
Confidence 99999999999999995
No 6
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Probab=100.00 E-value=4.1e-71 Score=534.03 Aligned_cols=370 Identities=38% Similarity=0.684 Sum_probs=332.6
Q ss_pred CCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCc--------cccCCCccceeccchhcccCcceeeccccCC
Q 017125 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV--------MVGMGQKDAYVGDEAQSKRGILTLKYPIEHG 76 (377)
Q Consensus 5 ~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~--------~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g 76 (377)
.+..+||||+||+++|+||++++.|++++||+++++++... ..+....+++||+++...++ ..+++|+++|
T Consensus 3 ~~~~~ivID~Gs~~~k~G~~~~~~p~~~~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~~~-~~~~~pi~~G 81 (418)
T 1k8k_A 3 GRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEKPT-YATKWPIRHG 81 (418)
T ss_dssp CCSCCEEEEECSSEEEEEETTCSSCSEEEESCEEECC-----------CCCTTGGGCEEEGGGGTSCTT-SEEECCEETT
T ss_pred CCCCeEEEECCCCeEEEeeCCCCCCCCcCCceEEEECcccccccccccccccccccCeEEChHHHhcCC-CEEeccccCC
Confidence 46689999999999999999999999999999998876421 22223346899999987754 7899999999
Q ss_pred ccCCHHHHHHHHHHhcccccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhh---------c
Q 017125 77 IVNNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA---------S 147 (377)
Q Consensus 77 ~i~d~~~~~~~~~~~~~~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~---------~ 147 (377)
.+.||+.++.+|+++|.+.|+++++++++++++|+.++...|+.+.+++||.+|+++++++++|+||+|+ .
T Consensus 82 ~i~d~d~~e~i~~~~~~~~L~~~~~~~~vvit~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~ 161 (418)
T 1k8k_A 82 IVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGER 161 (418)
T ss_dssp EESCHHHHHHHHHHHHHTTTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSC
T ss_pred EECCHHHHHHHHHHHHHhccCCCCCCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCC
Confidence 9999999999999999788999888999999999999999999999999999999999999999999998 5
Q ss_pred CCceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHH
Q 017125 148 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQ 227 (377)
Q Consensus 148 g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~ 227 (377)
+. +|+|||+|+++|+|+||++|.++.++...+++||++++++|.++|.+++..+....+.+.++++|+++|++..++.+
T Consensus 162 ~~-~glVvDiG~gtt~v~~v~~G~~~~~~~~~~~lGG~~lt~~l~~~l~~~~~~~~~~~~~~~~e~iK~~~~~v~~~~~~ 240 (418)
T 1k8k_A 162 TL-TGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVK 240 (418)
T ss_dssp CC-CEEEEEESSSCEEEEEEETTEECGGGCEEESCSHHHHHHHHHHHHHTTCCCCCGGGHHHHHHHHHHHHCCCCSCHHH
T ss_pred CC-eEEEEEcCCCceEEEEeECCEEcccceEEEeCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhchhcccHHH
Confidence 66 89999999999999999999999988899999999999999999998888776666788999999999999988877
Q ss_pred HHHHhccC-CCcceEEEcCCCc-----EEecCCccccccccCCCCccCCCCC-CChHHHHHHHHhcCChhHHHHhhcCce
Q 017125 228 ELETAKIS-SAVEKSYELPDGQ-----VITIGAERFRCPEVLFQPSMIGMES-AGIHETTYNSIMKCDVDIRKDLYGNIV 300 (377)
Q Consensus 228 ~~~~~~~~-~~~~~~~~lpd~~-----~i~i~~~~~~~~E~lf~p~~~~~~~-~~l~~~I~~~i~~~~~~~~~~l~~nIv 300 (377)
++++.... ......|.+||+. .+.++.+||.++|.||+|++.+.+. .+|.++|.++|.+||.++|+.+++|||
T Consensus 241 e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~Iv 320 (418)
T 1k8k_A 241 EFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIV 320 (418)
T ss_dssp HHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEE
T ss_pred HHHhhcccccccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceE
Confidence 76544321 2234689999998 8999999999999999999888764 799999999999999999999999999
Q ss_pred eccCCcCCcChHHHHHHHHHhhC----------------CCCceEEEECCCCCccccchhhhhhhcccccccccccHHHH
Q 017125 301 LSGGSTMFPGIADRMSKEITALA----------------PSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEY 364 (377)
Q Consensus 301 l~GG~s~i~g~~~rl~~eL~~~~----------------~~~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~~itr~ey 364 (377)
||||+|++|||.+||++||..+. |...++++..+++|.+++|+|||++|++.+|+++||||+||
T Consensus 321 L~GG~s~~pg~~~rl~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl~~f~~~~itk~ey 400 (418)
T 1k8k_A 321 LSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDY 400 (418)
T ss_dssp EESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTSHHHHHHSEEHHHH
T ss_pred EeCCccccccHHHHHHHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHcCccHhheEEEHHHH
Confidence 99999999999999999999875 56677899999999999999999999999999999999999
Q ss_pred hhcCCccccccc
Q 017125 365 DESGPSIVHRKC 376 (377)
Q Consensus 365 ~e~G~~~~~~k~ 376 (377)
+|+|+++++|||
T Consensus 401 ~e~G~~~~~~~~ 412 (418)
T 1k8k_A 401 EEIGPSICRHNP 412 (418)
T ss_dssp HHHCGGGGGCCC
T ss_pred hhhCHHHHhhhc
Confidence 999999999976
No 7
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*
Probab=100.00 E-value=2.7e-59 Score=454.70 Aligned_cols=363 Identities=22% Similarity=0.421 Sum_probs=303.5
Q ss_pred CCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCc--------------------------------------
Q 017125 4 AEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV-------------------------------------- 45 (377)
Q Consensus 4 ~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~-------------------------------------- 45 (377)
.++.++|||.+||.++|+|+|.|..|. .+|++++++.....
T Consensus 37 ~~~~~~IVIHpGS~~lRIG~AsD~~P~-~ip~~iA~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~k~rmr~~ 115 (655)
T 4am6_A 37 NDPTATIVIHPGSNSIKIGFPKDDHPV-VVPNCVAVPKKWLDLENSEHVENVCLQREQSEEFNNIKSEMEKNFRERMRYY 115 (655)
T ss_dssp CCGGGEEEEECCSSEEEEECTTSSSCE-EEESCEEEEGGGSCCSSSCCCCTTCCCSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCcceeeeecCCCCCc-ccceeEEeccccccCCCccccCccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 345789999999999999999999998 77999986531100
Q ss_pred ----------------------cc----------cCC-Cccceeccchhcc-cCcceeeccccCCccC----C-------
Q 017125 46 ----------------------MV----------GMG-QKDAYVGDEAQSK-RGILTLKYPIEHGIVN----N------- 80 (377)
Q Consensus 46 ----------------------~~----------~~~-~~~~~vg~~~~~~-~~~~~~~~p~~~g~i~----d------- 80 (377)
.+ +.+ ..+.+||++|... ++.+.+++|+++|.|. |
T Consensus 116 k~r~~pn~~e~~~~fN~~~~Pe~i~~~nDp~~~~W~~~~~d~~VGdEA~~~~r~~l~l~~PI~~GvI~~~s~Dy~s~q~~ 195 (655)
T 4am6_A 116 KRKVPGNAHEQVVSFNENSKPEIISEKNDPSPIEWIFDDSKLYYGSDALRCVDEKFVIRKPFRGGSFNVKSPYYKSLAEL 195 (655)
T ss_dssp SCCCSTTCCSSTTCCEEEECSCCCCSSSSCCSCCCBCCTTSCEEHHHHHTBCTTTEEEECSEETTEECTTCSSCSSHHHH
T ss_pred CCCCCCCCHHHHHHhcCCCCCeECCCCCCccccccccCCCCEEEehHHhhCCccCeEEeccccCCEecccCCcccccccc
Confidence 00 001 1467899999874 6778999999999998 8
Q ss_pred HHHHHHHHHHhccc-ccccCCC---CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcC-CceEEEE
Q 017125 81 WDDMEKIWHHTFYN-ELRVAPE---EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-RTTGIVL 155 (377)
Q Consensus 81 ~~~~~~~~~~~~~~-~L~~~~~---~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-~~~~lVV 155 (377)
|+.++.+|+|+|.+ .|++.++ ++|++|++|++++...|+++++++||.|++++++++.++++|+|++| .++|+||
T Consensus 196 WD~mE~Iw~y~f~~~~L~V~p~~~~e~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl~ttGLVV 275 (655)
T 4am6_A 196 ISDVTKLLEHALNSETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGISTSTCVV 275 (655)
T ss_dssp HHHHHHHHHHHHBSSSCBCCGGGGGGCEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCCSSCEEEE
T ss_pred HHHHHHHHHHHhccccccccccccCCCcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCCCCceEEE
Confidence 99999999999973 8999886 79999999999999999999999999999999999999999999999 6999999
Q ss_pred eCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCC-----CCcChhHHHHHHHHHHhccee-ccCHHHHH
Q 017125 156 DSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGY-----SFTTTAEREIVRDMKEKLAYI-ALDYEQEL 229 (377)
Q Consensus 156 DiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~-----~~~~~~~~~~~~~ik~~~~~v-~~~~~~~~ 229 (377)
|+|++.|+|+||++|+++.++..++++||++++++|.++|.++|+ ++....+.+++++||+++||| ..+..
T Consensus 276 DiG~g~T~VvPV~eG~vl~~ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t~~e~eiVrdIKEk~CyVs~~Di~--- 352 (655)
T 4am6_A 276 NIGAAETRIACVDEGTVLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSKHGWLLAERLKKNFTTFQDADVA--- 352 (655)
T ss_dssp EECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTTSHHHHHHHHHHHHHHCCCCGGGCC---
T ss_pred cCCCceEEEEEEeCCEEEhhheeeecchHHHHHHHHHHHHHHcCCCccccCCCCcchHHHHHHHHHheEEEcccchh---
Confidence 999999999999999999999999999999999999999999986 567778899999999999999 44421
Q ss_pred HHhccCCCcceEE--EcCCC----cEEecCCccccccccCCCCccCCC--------------------------------
Q 017125 230 ETAKISSAVEKSY--ELPDG----QVITIGAERFRCPEVLFQPSMIGM-------------------------------- 271 (377)
Q Consensus 230 ~~~~~~~~~~~~~--~lpd~----~~i~i~~~~~~~~E~lf~p~~~~~-------------------------------- 271 (377)
.....| ..|++ ..+.++.|+|.+||+||.|++++.
T Consensus 353 -------~q~~~f~~r~P~~~~~ky~i~vgdErflaPe~lF~Pei~~~~~~~~~~~~~~~~~~~~s~d~y~~~~nd~~S~ 425 (655)
T 4am6_A 353 -------VQLYNFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQIFKLIRTSSHKNSSLEFQLPESRDLFTNELNDWNSL 425 (655)
T ss_dssp -------SEEEEEEECCSSSCEEEEEEEESSHHHHHHHGGGSTHHHHHTSCCCCCCHHHHTTSCCCBCTTTCCBCSCCCH
T ss_pred -------hhhhcceeccCCCCCcceEEEECCeehhCchhcCChhhcccccccccccchhhhhcCccccccCCCCCCccch
Confidence 112222 33554 468899999999999999986410
Q ss_pred -----------------------------------------------CCCChHHHHHHHHhc-C---ChhHHHHhhcCce
Q 017125 272 -----------------------------------------------ESAGIHETTYNSIMK-C---DVDIRKDLYGNIV 300 (377)
Q Consensus 272 -----------------------------------------------~~~~l~~~I~~~i~~-~---~~~~~~~l~~nIv 300 (377)
...+|..+|.++|.. | +....++++.||+
T Consensus 426 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pLdkAIi~SIt~a~~~~d~~k~~~~y~nil 505 (655)
T 4am6_A 426 SQFESKEGNLYCDLNDDLKILNRILDAHNIIDQLQDKPENYGNTLKENFAPLEKAIVQSIANASITADVTRMNSFYSNIL 505 (655)
T ss_dssp HHHHHHTTCCGGGCCSHHHHHHHHHHHHHHHHHHHTSSCSCSCSSCCCCCCHHHHHHHHHHHHHHTSCGGGHHHHHTCEE
T ss_pred hHHhhhccccCCCCccHhhhhhhhhcccccccccccCCcccccccccccccHHHHHHHHHHhhhccccHHHHHHHhhcEE
Confidence 014888899999873 2 4444459999999
Q ss_pred eccCCcCCcChHHHHHHHHHhhCCC-------------------------------------------------------
Q 017125 301 LSGGSTMFPGIADRMSKEITALAPS------------------------------------------------------- 325 (377)
Q Consensus 301 l~GG~s~i~g~~~rl~~eL~~~~~~------------------------------------------------------- 325 (377)
+|||+|+||||...|...+...-|.
T Consensus 506 ivGggski~g~~~~L~dri~i~rp~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 585 (655)
T 4am6_A 506 IVGGSSKIPALDFILTDRINIWRPSLLSSASFPQFYKKLTKEIKDLEGHYVNAPDKTEDENKQILQAQIKEKIVEELEEQ 585 (655)
T ss_dssp EESTTCCCTTHHHHHHHHHHHHSCSTTTBTTHHHHHHHHHHHHHHHHSTTCSCCSSSCCSSTTSTTHHHHHHHHHHHHHH
T ss_pred EEcCcccCccHHHHHHHHHHhhCcccccccccHHHHHHHHHhhhhhhhhhccccccccccchhhhhhhhhhhhhhhhhhh
Confidence 9999999999987776665442110
Q ss_pred ------------CceEEEECCCCC---ccccchhhhhhhcccccccccccHHHHhhcCCcccccccC
Q 017125 326 ------------SMKIKVVAPPER---KYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377 (377)
Q Consensus 326 ------------~~~v~v~~~~~~---~~~~w~Gasi~a~l~~~~~~~itr~ey~e~G~~~~~~k~~ 377 (377)
-.+|+|..+|.+ .+.+|+|||++|+++.|+++||||+||+|+|++++++||+
T Consensus 586 ~~~~~~~~~~~~~~~i~V~~~p~~~d~~~~~W~GgSvla~l~~f~e~wIt~~Eyde~G~~il~~k~~ 652 (655)
T 4am6_A 586 HQNIEHQNGNEHIFPVSIIPPPRDMNPALIIWKGASVLAQIKLVEELFITNSDWDVHGSRILQYKCI 652 (655)
T ss_dssp HHHHHHTTSCCCBCCCCEECCCTTSCGGGHHHHHHHHHTTSHHHHHHCEEHHHHHHHGGGGGGTSCS
T ss_pred hhhhhhccccCCceeeEEeCCccccCcceeEEecceeeeecccHhheeecHHHHhhhcchheEeccc
Confidence 124788888854 8999999999999999999999999999999999999985
No 8
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=100.00 E-value=5.4e-36 Score=281.50 Aligned_cols=307 Identities=15% Similarity=0.206 Sum_probs=238.1
Q ss_pred CCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhccc----CcceeeccccCCccCCHHH
Q 017125 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR----GILTLKYPIEHGIVNNWDD 83 (377)
Q Consensus 8 ~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~----~~~~~~~p~~~g~i~d~~~ 83 (377)
.+|+||+||+++++|+.++. |.+.+||+++...+. ...+++|++|.... ....+.+|+++|.+.||+.
T Consensus 4 ~~igIDlGT~~s~v~~~~~~-~~~~~PS~v~~~~~~-------~~~~~vG~~A~~~~~~~~~~~~~~~p~~~g~i~~~~~ 75 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRGKG-IVVNEPSVIAIDSTT-------GEILKVGLEAKNMIGKTPATIKAIRPMRDGVIADYTV 75 (344)
T ss_dssp CEEEEEECSSEEEEEETTTE-EEEEEESCEEEETTT-------CCEEEESHHHHTTTTCCCTTEEEECCEETTEESSHHH
T ss_pred ceEEEEcCcCcEEEEECCCC-EEEeeCcEEEEecCC-------CcEEEEcHHHHHhcccCCCCeEEEecCCCCeeCChHH
Confidence 68999999999999998765 666789999876541 22357999987653 2345678999999999999
Q ss_pred HHHHHHHhcccccccC-CCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeC
Q 017125 84 MEKIWHHTFYNELRVA-PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDS 157 (377)
Q Consensus 84 ~~~~~~~~~~~~L~~~-~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDi 157 (377)
.+++|.+++.+..... ....++++++|+.++..+|+.+.+. ++.+|++.+.++++|+||+++++. .+++|||+
T Consensus 76 ~~~i~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~a-~~~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDi 154 (344)
T 1jce_A 76 ALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDA-GLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDI 154 (344)
T ss_dssp HHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHH-HHHTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEE
T ss_pred HHHHHHHHHHHHhhccccCCCeEEEEECCCCCHHHHHHHHHH-HHHcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEe
Confidence 9999999984322222 4468899999999999999998885 599999999999999999999986 68999999
Q ss_pred CCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHc-CCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCC
Q 017125 158 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER-GYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISS 236 (377)
Q Consensus 158 G~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~-~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~ 236 (377)
|+++|+++++..|.++ .....++||+++++.|.+++.++ +..+ ..+.++++|++++....+...+
T Consensus 155 Gggttdvsv~~~~~~~--~~~~~~lGG~~id~~l~~~l~~~~~~~~----~~~~ae~~K~~l~~~~~~~~~~-------- 220 (344)
T 1jce_A 155 GGGTTEVAVISLGSIV--TWESIRIAGDEMDEAIVQYVRETYRVAI----GERTAERVKIEIGNVFPSKEND-------- 220 (344)
T ss_dssp CSSCEEEEEEETTEEE--EEEEESCSHHHHHHHHHHHHHHHHCEEC----CHHHHHHHHHHHCBCSCCHHHH--------
T ss_pred CCCeEEEEEEEcCCEE--eeCCCCccChhHHHHHHHHHHHHhCccc----CHHHHHHHHHHHhccCccccCC--------
Confidence 9999999999999887 45678999999999999998754 3222 2467999999999875443211
Q ss_pred CcceEEEc-----CCCc--EEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhh-cCceeccCCcCC
Q 017125 237 AVEKSYEL-----PDGQ--VITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLY-GNIVLSGGSTMF 308 (377)
Q Consensus 237 ~~~~~~~l-----pd~~--~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~-~nIvl~GG~s~i 308 (377)
...+.+ .+|. .+.++.+++. .+|+|.+ ..+.+.|.++|.+++.+.+..++ ++|+||||+|++
T Consensus 221 --~~~~~~~~~~~~~g~~~~~~i~~~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~ 290 (344)
T 1jce_A 221 --ELETTVSGIDLSTGLPRKLTLKGGEVR---EALRSVV-----VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLL 290 (344)
T ss_dssp --HCEEEEEEEETTTTEEEEEEEEHHHHH---HHTHHHH-----HHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCS
T ss_pred --cceEEEeccccCCCCceeEEEeHHHHH---HHHHHHH-----HHHHHHHHHHHHhCCchhccchhhCcEEEECccccc
Confidence 112222 2553 3445444443 2444421 23788889999999988888888 799999999999
Q ss_pred cChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc-cccc
Q 017125 309 PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL-STFQ 355 (377)
Q Consensus 309 ~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l-~~~~ 355 (377)
|||.++|++++.. + +..+++|.+++|.||++++.. +.|+
T Consensus 291 p~l~~~l~~~~~~------~--v~~~~~p~~ava~Gaa~~a~~~~~~~ 330 (344)
T 1jce_A 291 RGLDTLLQKETGI------S--VIRSEEPLTAVAKGAGMVLDKVNILK 330 (344)
T ss_dssp BTHHHHHHHHHSS------C--EEECSSTTTHHHHHHHHGGGCHHHHT
T ss_pred hHHHHHHHHHHCC------C--ccccCChHHHHHHHHHHHHhChHHHH
Confidence 9999999999942 2 344678899999999999984 5553
No 9
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=99.93 E-value=2.5e-26 Score=226.07 Aligned_cols=297 Identities=16% Similarity=0.212 Sum_probs=201.2
Q ss_pred CCEEEeCCCCceEEeeeCCCCCCCC--------CCceeeeeCCCCccccCCCccceeccchhccc-----Ccceeec---
Q 017125 8 QPLVCDNGTGMVKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR-----GILTLKY--- 71 (377)
Q Consensus 8 ~~viiD~Gs~~~k~G~~~~~~P~~~--------~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~-----~~~~~~~--- 71 (377)
.+|.||+||+++++|++.+..|.++ +||+++.. ....++|++|.... ....+++
T Consensus 3 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~----------~~~~~vG~~A~~~~~~~p~~~~~~Kr~lg 72 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFK----------NGERLVGEVAKRQAITNPNTIISIKRHMG 72 (509)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEES----------SSSEEESHHHHTTTTTCSSEEECGGGTTT
T ss_pred CEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEEC----------CCcEEECHHHHHhHHhCCCcHHHHHHhcC
Confidence 5899999999999999987767654 67777662 23467898876542 1122222
Q ss_pred -ccc---CCccCCH-HHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhh
Q 017125 72 -PIE---HGIVNNW-DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLS 143 (377)
Q Consensus 72 -p~~---~g~i~d~-~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a 143 (377)
|+. +|...+. +....+++++.. ..++ .....+++++|..++..+|+.+.+.+ +.+|++.+.++++|.||
T Consensus 73 ~p~~~~~~g~~~~~~ei~a~~L~~l~~~ae~~l~--~~~~~~VitvPa~~~~~qr~a~~~a~-~~AGl~~~~li~Ep~AA 149 (509)
T 2v7y_A 73 TDYKVEIEGKQYTPQEISAIILQYLKSYAEDYLG--EPVTRAVITVPAYFNDAQRQATKDAG-RIAGLEVERIINEPTAA 149 (509)
T ss_dssp SCCCEEETTEEECHHHHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHH
T ss_pred CCcEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEecCHHHH
Confidence 555 5642222 223333333321 1222 33478999999999999999988865 88999999999999999
Q ss_pred hhhcCC-----ceEEEEeCCCCceEEEEee--Ccee-cccceEEecccHHHHHHHHHHHHHHc-----CCCCcChh----
Q 017125 144 LYASGR-----TTGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTER-----GYSFTTTA---- 206 (377)
Q Consensus 144 ~~~~g~-----~~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-----~~~~~~~~---- 206 (377)
+++++. .+.+|+|+|+++++++.+. +|.. +.......++||.++++.|.+++.++ +.++....
T Consensus 150 Alay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~ 229 (509)
T 2v7y_A 150 ALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQ 229 (509)
T ss_dssp HHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCGGGCHHHHH
T ss_pred HHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHH
Confidence 999886 4799999999999999876 4543 22233456999999999999888653 44443211
Q ss_pred -HHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC------CC---cEEecCCccccccccCCCCccCCCCCCCh
Q 017125 207 -EREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP------DG---QVITIGAERFRCPEVLFQPSMIGMESAGI 276 (377)
Q Consensus 207 -~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp------d~---~~i~i~~~~~~~~E~lf~p~~~~~~~~~l 276 (377)
-...++.+|+.++... ...+.+| +| ..+.++.+.|. .+|+|-+ ..+
T Consensus 230 ~l~~~aE~~K~~ls~~~----------------~~~i~l~~~~~~~~G~~~~~~~itr~~fe---~l~~~~~-----~~i 285 (509)
T 2v7y_A 230 RLKDAAEKAKKELSGVT----------------QTQISLPFISANENGPLHLEMTLTRAKFE---ELSAHLV-----ERT 285 (509)
T ss_dssp HHHHHHHHHHHHTTTCS----------------EEEEEEEEEEEETTEEEEEEEEEEHHHHH---HHTHHHH-----HTT
T ss_pred HHHHHHHHHHHhcCCCC----------------cEEEEEeccccCCCCCeeEEEEEEHHHHH---HHHHHHH-----HHH
Confidence 1355777888776431 1222222 23 12234333332 3333311 126
Q ss_pred HHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 277 HETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 277 ~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|.++|..+. +....+++|+|+||+|++|++.++|++.+.. .+..+.+|+.++|.||+++|..
T Consensus 286 ~~~i~~~L~~a~--~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~--------~~~~~~~p~~aVa~Gaa~~a~~ 350 (509)
T 2v7y_A 286 MGPVRQALQDAG--LTPADIDKVILVGGSTRIPAVQEAIKRELGK--------EPHKGVNPDEVVAIGAAIQGGV 350 (509)
T ss_dssp HHHHHHHHHHHT--CCGGGCSEEEEESGGGGCHHHHHHHHHHHSS--------CCBCCSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CChhHCcEEEEECCcccChHHHHHHHHHhCC--------CcCcCCCchhhhHhhHHHHHHH
Confidence 777777777664 2345678999999999999999999998842 2345678999999999999864
No 10
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=99.92 E-value=2.5e-24 Score=195.33 Aligned_cols=244 Identities=16% Similarity=0.149 Sum_probs=180.3
Q ss_pred CCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCcceeeccccCCccCCHHHHHH
Q 017125 7 IQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEK 86 (377)
Q Consensus 7 ~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~~~p~~~g~i~d~~~~~~ 86 (377)
...++||+||.++|+.+..++. . .++ .+ .....|+++|.+.||+..+.
T Consensus 28 ~~~~gIDiGS~s~k~vi~~~~~-~-----~l~-----------------~~---------~~~~~~l~~g~i~d~~~~~~ 75 (272)
T 3h1q_A 28 PYKVGVDLGTADIVLVVTDQEG-I-----PVA-----------------GA---------LKWASVVKDGLVVDYIGAIQ 75 (272)
T ss_dssp CCEEEEECCSSEEEEEEECTTC-C-----EEE-----------------EE---------EEECCCCBTTBCTTHHHHHH
T ss_pred CEEEEEEcccceEEEEEECCCC-c-----EEE-----------------EE---------eecccccCCCEEEcHHHHHH
Confidence 4578999999999998853221 1 111 11 11235889999999999999
Q ss_pred HHHHhccccccc-CCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCceEEEEeCCCCceEEE
Q 017125 87 IWHHTFYNELRV-APEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 165 (377)
Q Consensus 87 ~~~~~~~~~L~~-~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~ 165 (377)
+|++++...... ......++++.|..+....++. ++.+++.+|++...+..++.|++++++..+++|||+|+++|+++
T Consensus 76 ~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~-~~~~~~~~g~~~~~i~~e~~A~a~~~~~~~~~viDiGggst~~~ 154 (272)
T 3h1q_A 76 IVRELKAKVERLLGSELFQAATAIPPGTVGRNAEA-CGHVVAGAGLELVTLVDEPVAAARALGINDGIVVDIGGGTTGIA 154 (272)
T ss_dssp HHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTH-HHHHHHHTTCEEEEEECHHHHHHHHHTCSSEEEEEECSSCEEEE
T ss_pred HHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHH-HHHHHHHcCCeeeecccHHHHHHHHHcCCCEEEEEECCCcEEEE
Confidence 999997543333 2234567788887776666654 55567999999999999999999999999999999999999999
Q ss_pred EeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC
Q 017125 166 PIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP 245 (377)
Q Consensus 166 ~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp 245 (377)
++.+|.++ .....++||.++++.+.+.+. .+.+.++++|++++.- ++++..
T Consensus 155 ~~~~g~~~--~~~~~~~Gg~~~~~~l~~~l~---------~~~~~ae~~k~~~~~~-----~~~~~~------------- 205 (272)
T 3h1q_A 155 VIEKGKIT--ATFDEPTGGTHLSLVLAGSYK---------IPFEEAETIKKDFSRH-----REIMRV------------- 205 (272)
T ss_dssp EEETTEEE--EECCBSCCHHHHHHHHHHHHT---------CCHHHHHHHHHSSTTH-----HHHHHH-------------
T ss_pred EEECCEEE--EEecCCCcHHHHHHHHHHHhC---------CCHHHHHHHHHhcCCH-----HHHHHH-------------
Confidence 99999988 456789999999999998873 1345688899887621 111110
Q ss_pred CCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCC
Q 017125 246 DGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPS 325 (377)
Q Consensus 246 d~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~ 325 (377)
.+.++. .+.+.+.+.+.+++ ..++|+|+||+|++|||.++|++++..
T Consensus 206 --------------~~~~~~---------~i~~~i~~~l~~~~------~~~~ivL~GG~a~~~~l~~~l~~~l~~---- 252 (272)
T 3h1q_A 206 --------------VRPVIE---------KMALIVKEVIKNYD------QTLPVYVVGGTAYLTGFSEEFSRFLGK---- 252 (272)
T ss_dssp --------------HHHHHH---------HHHHHHHHHTTTSC------SSCCEEEESGGGGSTTHHHHHHHHHSS----
T ss_pred --------------HHHHHH---------HHHHHHHHHHHhcC------CCCEEEEECCccchhhHHHHHHHHhCC----
Confidence 011111 16667777777775 235999999999999999999999832
Q ss_pred CceEEEECCCCCccccchhhhhhh
Q 017125 326 SMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 326 ~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
++..+++|+++.|.||+++|
T Consensus 253 ----~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 253 ----EVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp ----CCBCCSSGGGHHHHHHHTTC
T ss_pred ----CccccCChHHHHHHHHHhcC
Confidence 34456789999999999875
No 11
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=99.91 E-value=1.9e-24 Score=205.71 Aligned_cols=304 Identities=15% Similarity=0.162 Sum_probs=195.8
Q ss_pred CCEEEeCCCCceEEeeeCCCCCCCC--------CCceeeeeCCCCccccCCCccceeccchhccc------Cccee----
Q 017125 8 QPLVCDNGTGMVKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTL---- 69 (377)
Q Consensus 8 ~~viiD~Gs~~~k~G~~~~~~P~~~--------~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~---- 69 (377)
..|.||+||+++.+++..+..|.++ +||+++...+ ...++|.+|.... ....+
T Consensus 3 ~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~---------~~~~~G~~A~~~~~~~~~~~~~~~k~~l 73 (383)
T 1dkg_D 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQD---------GETLVGQPAKRQAVTNPQNTLFAIKRLI 73 (383)
T ss_dssp CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTT---------SCEEESHHHHTTSTTCGGGEEECGGGTT
T ss_pred cEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECC---------CCEEECHHHHHhhhhCccceeehhHHhh
Confidence 4789999999999998865444433 5676665332 2234555543220 00000
Q ss_pred --------------ecccc-------------CCccCC-HHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhH
Q 017125 70 --------------KYPIE-------------HGIVNN-WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR 118 (377)
Q Consensus 70 --------------~~p~~-------------~g~i~d-~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~ 118 (377)
.+|+. .|.... .+....+++++.. ..++ .....+++++|..++..+|
T Consensus 74 g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i~~~~L~~l~~~a~~~~~--~~~~~~vitvP~~~~~~~r 151 (383)
T 1dkg_D 74 GRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLG--EPVTEAVITVPAYFNDAQR 151 (383)
T ss_dssp TCBSCSHHHHHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHS--SCCCEEEECBCTTCCHHHH
T ss_pred CCCCCcHHHHHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHH
Confidence 02222 232222 3344555555531 2232 2346799999999999999
Q ss_pred HHHHhhhcccCCCCeEEEechhhhhhhhcCCc------eEEEEeCCCCceEEEEeeCc------eec-ccceEEecccHH
Q 017125 119 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRT------TGIVLDSGDGVSHTVPIYEG------YAL-PHAILRLDLAGR 185 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~------~~lVVDiG~~~t~v~~v~~g------~~~-~~~~~~~~~GG~ 185 (377)
+.+.+.+ +.+|++.+.++++|.||+++++.. +.+|+|+|+++|+++.+..+ ... .......++||+
T Consensus 152 ~~~~~a~-~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~ 230 (383)
T 1dkg_D 152 QATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGE 230 (383)
T ss_dssp HHHHHHH-HHTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHH
T ss_pred HHHHHHH-HHcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHH
Confidence 9988875 889999999999999999988653 78999999999999988754 221 112345699999
Q ss_pred HHHHHHHHHHHHc-----CCCCcChh-----HHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCC-c--EEec
Q 017125 186 DLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDG-Q--VITI 252 (377)
Q Consensus 186 ~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~-~--~i~i 252 (377)
++++.|.+++.++ +.++.... -.+.++++|++++..... .-..+..+..++| . .+.+
T Consensus 231 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~----------~i~i~~~~~~~~G~~~~~~~i 300 (383)
T 1dkg_D 231 DFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQT----------DVNLPYITADATGPKHMNIKV 300 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEE----------EEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCce----------EEEEecccccCCCCeeEEEEE
Confidence 9999999888654 44443211 135678888887753200 0000111223334 2 2344
Q ss_pred CCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEE
Q 017125 253 GAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVV 332 (377)
Q Consensus 253 ~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~ 332 (377)
+.+.+. .+|+|.+ ..+.+.|.++|.+++. .+..+++|+|+||+|++|++.++|++++.. ++.
T Consensus 301 t~~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~--~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~--------~v~ 362 (383)
T 1dkg_D 301 TRAKLE---SLVEDLV-----NRSIELLKVALQDAGL--SVSDIDDVILVGGQTRMPMVQKKVAEFFGK--------EPR 362 (383)
T ss_dssp EHHHHH---HHSHHHH-----HHHHHHHHHHHHTTTC--CTTTCCEEEEESGGGGSHHHHHHHHHHHSS--------CCB
T ss_pred eHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCC--CHhhCCEEEEecCccccHHHHHHHHHHhCC--------CCC
Confidence 443332 3344411 1266777777777652 345568999999999999999999999842 244
Q ss_pred CCCCCccccchhhhhhhcc
Q 017125 333 APPERKYSVWIGGSILASL 351 (377)
Q Consensus 333 ~~~~~~~~~w~Gasi~a~l 351 (377)
.+.+|++++|.||+++|..
T Consensus 363 ~~~~p~~ava~Gaa~~a~~ 381 (383)
T 1dkg_D 363 KDVNPDEAVAIGAAVQGGV 381 (383)
T ss_dssp CSSCTTTHHHHHHHHHTTT
T ss_pred CCcChHHHHHHHHHHHHHh
Confidence 5678999999999999875
No 12
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=99.90 E-value=5e-24 Score=203.53 Aligned_cols=299 Identities=17% Similarity=0.169 Sum_probs=186.2
Q ss_pred CCCEEEeCCCCceEEeeeCCCCCCCC--------CCceeeeeCCCCccccCCCccceeccchhcc--cCcceeeccccCC
Q 017125 7 IQPLVCDNGTGMVKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDAYVGDEAQSK--RGILTLKYPIEHG 76 (377)
Q Consensus 7 ~~~viiD~Gs~~~k~G~~~~~~P~~~--------~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~--~~~~~~~~p~~~g 76 (377)
..+|.||+||+++++++..+..|.++ +||+++.. .+..++|+++... .......+.+++.
T Consensus 18 ~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~----------~~~~~vG~~A~~~~~~~~~~~~~~~k~~ 87 (394)
T 3qfu_A 18 GTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFT----------DDERLIGDAAKNQVAANPQNTIFDIKRL 87 (394)
T ss_dssp CSCEEEEECSSEEEEEEECSSCEEECCCTTSCSSEECCEEEC----------SSCEEESHHHHHTGGGCGGGEECCGGGT
T ss_pred CCEEEEEeCcCcEEEEEEECCeeEEEECCCCCEeeceEEEEe----------CCcEEecHHHHHhhHhCcccCHHHHHHH
Confidence 46799999999999999987666533 25555443 2345678776543 1111111111111
Q ss_pred c--------------------------------------cCC-HHHHHHHHHHhc---ccccccCCCCCcEEEeeCCCCC
Q 017125 77 I--------------------------------------VNN-WDDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNP 114 (377)
Q Consensus 77 ~--------------------------------------i~d-~~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~~ 114 (377)
. ... .+....+++++. ...++ .....+++++|..++
T Consensus 88 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~a~~l~~l~~~a~~~~~--~~~~~~vitvP~~~~ 165 (394)
T 3qfu_A 88 IGLKYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEEISGMILGKMKQIAEDYLG--TKVTHAVVTVPAYFN 165 (394)
T ss_dssp TTCCTTCHHHHHHHTTCSSEEEEETTEEEEEEESSSSEEEECHHHHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCC
T ss_pred hCCCCCcHHHHHHhhcCCeEEEcCCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHhcC--CCcceEEEEECCCCC
Confidence 1 111 133334444432 12232 334689999999999
Q ss_pred HHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCc------eEEEEeCCCCceEEEEee--Cceec-ccceEEecccHH
Q 017125 115 KANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT------TGIVLDSGDGVSHTVPIY--EGYAL-PHAILRLDLAGR 185 (377)
Q Consensus 115 ~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~------~~lVVDiG~~~t~v~~v~--~g~~~-~~~~~~~~~GG~ 185 (377)
..+|+.+.+.+ +.+|++.+.++++|.||+++++.. +.+|+|+|+++|+++.+. ++... .......++||.
T Consensus 166 ~~~r~~~~~a~-~~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~~~~~~~~~~lGG~ 244 (394)
T 3qfu_A 166 DAQRQATKDAG-TIAGLNVLRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGE 244 (394)
T ss_dssp HHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHH
T ss_pred HHHHHHHHHHH-HHcCCceEEEecCHHHHHHHHhhccCCCCceEEEEEcCCCceeEEEEEEeCCEEEEEEEcCCCCCChH
Confidence 99999888777 889999999999999999998653 569999999999998775 33221 122334799999
Q ss_pred HHHHHHHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC---CCcEE--
Q 017125 186 DLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP---DGQVI-- 250 (377)
Q Consensus 186 ~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp---d~~~i-- 250 (377)
++++.|.+++.++ +.+...... ...++.+|+.++.. ....+.++ ++..+
T Consensus 245 ~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~----------------~~~~~~~~~~~~~~~~~~ 308 (394)
T 3qfu_A 245 DFDYKIVRQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQ----------------MSTRIEIDSFVDGIDLSE 308 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTC----------------SEEEEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHHHHcccC----------------CcEEEEEEeccCCceeEE
Confidence 9999999888432 222221111 12345555544321 11222221 33222
Q ss_pred ecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEE
Q 017125 251 TIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIK 330 (377)
Q Consensus 251 ~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~ 330 (377)
.++.+.+ |-++.|. ...+.+.|.+.|..+..+ ...+++|+|+||+|++|++.++|++.+.. .+
T Consensus 309 ~i~r~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~~~-------~~ 371 (394)
T 3qfu_A 309 TLTRAKF---EELNLDL-----FKKTLKPVEKVLQDSGLE--KKDVDDIVLVGGSTRIPKVQQLLESYFDG-------KK 371 (394)
T ss_dssp EEEHHHH---HHHHHHH-----HHHTHHHHHHHHHHHTCC--GGGCCEEEEESGGGGSHHHHHHHHHHTTT-------CC
T ss_pred EEEHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCCC--HHHCCEEEEECCccccHHHHHHHHHHcCC-------CC
Confidence 2222222 1222221 112566667777665433 45668999999999999999999988732 23
Q ss_pred EECCCCCccccchhhhhhhcc
Q 017125 331 VVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 331 v~~~~~~~~~~w~Gasi~a~l 351 (377)
+..+.+|+.++|.||+++|++
T Consensus 372 v~~~~~p~~ava~Gaa~~a~~ 392 (394)
T 3qfu_A 372 ASKGINPDEAVAYGAAVQAGV 392 (394)
T ss_dssp CBCCSCTTTHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHh
Confidence 455678999999999999864
No 13
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=99.88 E-value=8.4e-23 Score=195.74 Aligned_cols=300 Identities=17% Similarity=0.187 Sum_probs=185.1
Q ss_pred CCCCEEEeCCCCceEEeeeCCCCCCC--------CCCceeeeeCCCCccccCCCccceeccchhccc--CcceeeccccC
Q 017125 6 DIQPLVCDNGTGMVKAGFAGDDAPRA--------VFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR--GILTLKYPIEH 75 (377)
Q Consensus 6 ~~~~viiD~Gs~~~k~G~~~~~~P~~--------~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~--~~~~~~~p~~~ 75 (377)
.+.+|.||+||+++++++..+..|.+ .+||+++.. .+..++|.+|.... ......+.+++
T Consensus 22 ~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~----------~~~~~vG~~A~~~~~~~~~~~~~~~Kr 91 (404)
T 3i33_A 22 SMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT----------DTERLIGDAAKNQVAMNPTNTIFDAKR 91 (404)
T ss_dssp -CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEEC----------SSCEEETHHHHHTTTTCSTTEECCGGG
T ss_pred cCCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEEC----------CCCEEecHHHHHhhHhChhhhHHHHHH
Confidence 35689999999999999987665542 234444432 23566787775431 11112222222
Q ss_pred Ccc---------------------------------------CCHHHHHHHHHHhc---ccccccCCCCCcEEEeeCCCC
Q 017125 76 GIV---------------------------------------NNWDDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLN 113 (377)
Q Consensus 76 g~i---------------------------------------~d~~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~ 113 (377)
..- .-.+....+++++. ...++ .....+++++|..+
T Consensus 92 ~lg~~~~~~~~~~~~~~~p~~~~~~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~--~~~~~~vitvPa~~ 169 (404)
T 3i33_A 92 LIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLG--GKVHSAVITVPAYF 169 (404)
T ss_dssp TTTCCTTSHHHHHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHS--SCCCEEEEEECTTC
T ss_pred HhCCCCCcHHHHHHHhhCCceEEccCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhc--cCCCcEEEEECCCC
Confidence 111 11123344444442 12222 23467999999999
Q ss_pred CHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCc---------eEEEEeCCCCceEEEEee--Ccee-cccceEEec
Q 017125 114 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT---------TGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLD 181 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~---------~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~ 181 (377)
+..+|+.+.+.+ +.+|++.+.++++|.||+++++.. +.+|+|+|+++|+++.+. +|.. +.......+
T Consensus 170 ~~~~r~~~~~a~-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~ 248 (404)
T 3i33_A 170 NDSQRQATKDAG-TITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTH 248 (404)
T ss_dssp CHHHHHHHHHHH-HHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETT
T ss_pred CHHHHHHHHHHH-HHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCC
Confidence 999999887774 889999999999999999988643 469999999999999874 4332 222334579
Q ss_pred ccHHHHHHHHHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEc---CCCc
Q 017125 182 LAGRDLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYEL---PDGQ 248 (377)
Q Consensus 182 ~GG~~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~l---pd~~ 248 (377)
+||.++++.+.+++.++ +.++..... ...++..|+.++.. ....+.+ .++.
T Consensus 249 lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~----------------~~~~~~~~~~~~g~ 312 (404)
T 3i33_A 249 LGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSS----------------TQASIEIDSLYEGV 312 (404)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTS----------------SEEEEEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcC----------------cceEEEEeeccCCc
Confidence 99999999999888432 333221110 13455555554321 1122222 1333
Q ss_pred EE--ecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCC
Q 017125 249 VI--TIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSS 326 (377)
Q Consensus 249 ~i--~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~ 326 (377)
.+ .++.+.+ |-++.|. ...+.+.|.+.|..... ....+++|+||||+|++|++.++|++.+...
T Consensus 313 ~~~~~i~r~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~--~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~---- 378 (404)
T 3i33_A 313 DFYTSITRARF---EELNADL-----FRGTLEPVEKALRDAKL--DKGQIQEIVLVGGSTRIPKIQKLLQDFFNGK---- 378 (404)
T ss_dssp EEEEEEEHHHH---HHHTHHH-----HHHTHHHHHHHHHHHTC--CGGGCCEEEEESGGGGCHHHHHHHHHHTTTC----
T ss_pred eeEEEEcHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCC--CHhhCCEEEEECCccccHHHHHHHHHHcCCC----
Confidence 22 2222222 2233331 11245566666665432 2345688999999999999999999887321
Q ss_pred ceEEEECCCCCccccchhhhhhhcc
Q 017125 327 MKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 327 ~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++..+.+|+.+++.||+++|.+
T Consensus 379 ---~v~~~~~p~~ava~Gaa~~a~~ 400 (404)
T 3i33_A 379 ---ELNKSINPDEAVAYGAAVQAAI 400 (404)
T ss_dssp ---CCBCSSCTTTHHHHHHHHHHHH
T ss_pred ---CCCCCcCHHHHHHHHHHHHHHH
Confidence 3445678999999999999875
No 14
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=99.84 E-value=8.8e-21 Score=189.89 Aligned_cols=298 Identities=17% Similarity=0.202 Sum_probs=189.6
Q ss_pred CCEEEeCCCCceEEeeeCCCCCCC--------CCCceeeeeCCCCccccCCCccceeccchhccc------Ccceee---
Q 017125 8 QPLVCDNGTGMVKAGFAGDDAPRA--------VFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTLK--- 70 (377)
Q Consensus 8 ~~viiD~Gs~~~k~G~~~~~~P~~--------~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~~--- 70 (377)
..|.||+||+++.+++..+..|.+ .+||+++...+ ...++|.+|.... ....++
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~---------~~~~vG~~A~~~~~~~p~~t~~~~Kr~i 73 (605)
T 2kho_A 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQD---------GETLVGQPAKRQAVTNPQNTLFAIKRLI 73 (605)
T ss_dssp -CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTT---------SCEEESHHHHTTTTTCGGGEEECGGGTT
T ss_pred CEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECC---------CcEEECHHHHHHhhhCCCCEeehhhHhh
Confidence 489999999999999886554442 25666655322 2344665553320 000011
Q ss_pred ---------------cccc-------------CCccCC-HHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhH
Q 017125 71 ---------------YPIE-------------HGIVNN-WDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR 118 (377)
Q Consensus 71 ---------------~p~~-------------~g~i~d-~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~ 118 (377)
+|+. .|.... .+....+++++.. ..++ ..-..+++++|..++..+|
T Consensus 74 G~~~~d~~v~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L~~l~~~ae~~l~--~~v~~~VitVPa~f~d~qr 151 (605)
T 2kho_A 74 GRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLG--EPVTEAVITVPAYFNDAQR 151 (605)
T ss_dssp TCBSSSTTHHHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHC--SCCCEEEEEECTTCCHHHH
T ss_pred CCCCCcHHHHHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhC--CCCcEEEEEECCCCCHHHH
Confidence 1222 232222 2333445554431 2333 2345799999999999999
Q ss_pred HHHHhhhcccCCCCeEEEechhhhhhhhcCCc------eEEEEeCCCCceEEEEeeC------cee-cccceEEecccHH
Q 017125 119 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRT------TGIVLDSGDGVSHTVPIYE------GYA-LPHAILRLDLAGR 185 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~------~~lVVDiG~~~t~v~~v~~------g~~-~~~~~~~~~~GG~ 185 (377)
+.+.+.+ +.+|++.+.++++|.||++++|.. +.+|+|+|+++++|+.+.. |.. +.......++||.
T Consensus 152 ~a~~~A~-~~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~ 230 (605)
T 2kho_A 152 QATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGE 230 (605)
T ss_dssp HHHHHHH-HTTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGG
T ss_pred HHHHHHH-HHcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHH
Confidence 9888776 889999999999999999988643 5899999999999998873 432 2222345689999
Q ss_pred HHHHHHHHHHHHc-----CCCCcChh-----HHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcC------CC-c
Q 017125 186 DLTDALMKILTER-----GYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELP------DG-Q 248 (377)
Q Consensus 186 ~i~~~l~~~l~~~-----~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lp------d~-~ 248 (377)
++++.|.+++.++ +.++.... -...++.+|+.++... ...+.+| +| .
T Consensus 231 d~D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~----------------~~~i~l~~~~~~~~G~~ 294 (605)
T 2kho_A 231 DFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQ----------------QTDVNLPYITADATGPK 294 (605)
T ss_dssp GTHHHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSS----------------EEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCC----------------ceEEEecccccCCCCce
Confidence 9999999888643 44443211 1245677777766321 1122222 22 1
Q ss_pred E--EecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCC
Q 017125 249 V--ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSS 326 (377)
Q Consensus 249 ~--i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~ 326 (377)
. +.++.+.| |-++.|- ...+.+.|.++|..... ....++.|+||||+|++|++.+++++.+..
T Consensus 295 ~~~~~itr~~f---e~l~~~~-----~~~i~~~i~~~L~~a~~--~~~~i~~VvLvGG~srip~v~~~l~~~fg~----- 359 (605)
T 2kho_A 295 HMNIKVTRAKL---ESLVEDL-----VNRSIEPLKVALQDAGL--SVSDIDDVILVGGQTRMPMVQKKVAEFFGK----- 359 (605)
T ss_dssp EEEEEEEHHHH---HTTCCST-----TGGGTSHHHHHHHTTTC--CTTTCSEEEEESGGGGSHHHHHHHHHHHSS-----
T ss_pred EEEEEEeHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCC--ChhhCceEEEECCcccChHHHHHHHHhcCC-----
Confidence 1 23333332 2233331 12267778888877642 234568999999999999999999988832
Q ss_pred ceEEEECCCCCccccchhhhhhhcc
Q 017125 327 MKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 327 ~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+....+|+.+++.||+++|..
T Consensus 360 ---~~~~~~npd~aVA~GAa~~a~~ 381 (605)
T 2kho_A 360 ---EPRKDVNPDEAVAIGAAVQGGV 381 (605)
T ss_dssp ---CCBCSSCTTTHHHHHHHHHHTT
T ss_pred ---CcCcCCCcchHHHHHHHHHHHH
Confidence 2345678899999999999874
No 15
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=99.83 E-value=4e-20 Score=183.38 Aligned_cols=216 Identities=17% Similarity=0.208 Sum_probs=147.1
Q ss_pred CCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-------ceEEEEeCCCCceEEEEee--Ccee
Q 017125 102 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIY--EGYA 172 (377)
Q Consensus 102 ~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~v~~v~--~g~~ 172 (377)
-..+++++|..++..+|+.+.+.+ +.+|++.+.++++|.||+++++. .+.+|+|+|+++++++.+. +|..
T Consensus 139 v~~~VitVPa~f~~~qr~a~~~A~-~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~ 217 (554)
T 1yuw_A 139 VTNAVVTVPAYFNDSQRQATKDAG-TIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIF 217 (554)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHH-HTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEE
T ss_pred CCeEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcE
Confidence 357999999999999999888755 88999999999999999998863 4689999999999999887 6754
Q ss_pred -cccceEEecccHHHHHHHHHHHHHH-----cCCCCcChh-----HHHHHHHHHHhcceeccCHHHHHHHhccCCCcceE
Q 017125 173 -LPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTA-----EREIVRDMKEKLAYIALDYEQELETAKISSAVEKS 241 (377)
Q Consensus 173 -~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~-----~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~ 241 (377)
+.......++||.++++.|.+++.. .+.++.... -...++.+|+.++... ...
T Consensus 218 ~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~----------------~~~ 281 (554)
T 1yuw_A 218 EVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSST----------------QAS 281 (554)
T ss_dssp EEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSS----------------EEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCc----------------eEE
Confidence 2334456799999999999988753 233432211 1244666777655321 122
Q ss_pred EEcC---CCcE--EecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHH
Q 017125 242 YELP---DGQV--ITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMS 316 (377)
Q Consensus 242 ~~lp---d~~~--i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~ 316 (377)
+.++ +|.. +.++.+.| |-++.|- ...+.+.|.+++.... +.+..++.|+|+||+|++|++.++|+
T Consensus 282 i~i~~~~~g~~~~~~ltr~~~---e~l~~~~-----~~~i~~~i~~~L~~a~--~~~~~i~~VvLvGG~srip~v~~~l~ 351 (554)
T 1yuw_A 282 IEIDSLYEGIDFYTSITRARF---EELNADL-----FRGTLDPVEKALRDAK--LDKSQIHDIVLVGGSTRIPKIQKLLQ 351 (554)
T ss_dssp EEETTCSSSCCEEEEEEHHHH---HHHTHHH-----HHHTTHHHHHHHHHTT--CCGGGCCEEEEESGGGGCHHHHHHHH
T ss_pred EEEeeccCCceEEEEEEHHHH---HHHHHHH-----HHHHHHHHHHHHHHcC--CChhhCcEEEEECCcccChHHHHHHH
Confidence 3332 2322 22222222 1222220 0114455666665542 22345689999999999999999998
Q ss_pred HHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 317 KEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 317 ~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+.+... ++..+.+|+.+++.||+++|..
T Consensus 352 ~~f~~~-------~v~~~~np~~aVA~Gaa~~a~~ 379 (554)
T 1yuw_A 352 DFFNGK-------ELNKSINPDEAVAYGAAVQAAI 379 (554)
T ss_dssp HHTTTC-------CCBCCSCTTTHHHHHHHHHHHH
T ss_pred HHcCCC-------ccccCCCchhHHHHHHHHHHHH
Confidence 877432 3345678899999999999863
No 16
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=99.82 E-value=3.5e-20 Score=187.07 Aligned_cols=213 Identities=10% Similarity=0.176 Sum_probs=146.2
Q ss_pred CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC------------ceEEEEeCCCCceEEEEee--
Q 017125 103 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------------TTGIVLDSGDGVSHTVPIY-- 168 (377)
Q Consensus 103 ~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------------~~~lVVDiG~~~t~v~~v~-- 168 (377)
..++|++|..++..+|+.+.+.+ +.+|++.+.++++|.||++++|. .+.+|+|+|+++++|+.+.
T Consensus 139 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~ 217 (675)
T 3d2f_A 139 TDVCIAVPPWYTEEQRYNIADAA-RIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFK 217 (675)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEE
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEec
Confidence 57999999999999999888766 88999999999999999987742 4689999999999999886
Q ss_pred Ccee-cccceEEecccHHHHHHHHHHHHHH-----cCCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCC
Q 017125 169 EGYA-LPHAILRLDLAGRDLTDALMKILTE-----RGYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSA 237 (377)
Q Consensus 169 ~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~-----~~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~ 237 (377)
+|.. +.......++||.++++.|.+++.. .+.++..... ...++.+|+.++..
T Consensus 218 ~g~~~V~a~~gd~~lGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~---------------- 281 (675)
T 3d2f_A 218 KGQLKVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSAN---------------- 281 (675)
T ss_dssp TTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred CCeEEEEEEcCCCCccHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcC----------------
Confidence 6654 3333345799999999999998853 2333321111 24466667665421
Q ss_pred cceEEEcC---CCc--EEecCCcccc-ccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcCh
Q 017125 238 VEKSYELP---DGQ--VITIGAERFR-CPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGI 311 (377)
Q Consensus 238 ~~~~~~lp---d~~--~i~i~~~~~~-~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~ 311 (377)
....+.++ ++. .+.++.+.|. ..+.++.. +.+.|.+++..... ...-++.|+||||+|++|++
T Consensus 282 ~~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~---------i~~~i~~~L~~a~l--~~~~I~~VvLvGGssriP~v 350 (675)
T 3d2f_A 282 TNAPFSVESVMNDVDVSSQLSREELEELVKPLLER---------VTEPVTKALAQAKL--SAEEVDFVEIIGGTTRIPTL 350 (675)
T ss_dssp SEEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHTT---------TTHHHHHHHHHHTC--CGGGCCEEEEESGGGGSHHH
T ss_pred CceEEEEeeeccCceEEEEEeHHHHHHHHHHHHHH---------HHHHHHHHHHHhCC--ChhhCcEEEEECCCccChHH
Confidence 01222232 122 2233332221 22223322 56666677665421 12346899999999999999
Q ss_pred HHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 312 ADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 312 ~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.++|++.+.. .+....+|+.++..||+++|..
T Consensus 351 ~~~l~~~fg~--------~~~~~~nPdeaVA~GAa~~a~~ 382 (675)
T 3d2f_A 351 KQSISEAFGK--------PLSTTLNQDEAIAKGAAFICAI 382 (675)
T ss_dssp HHHHHHHHTS--------CEECCSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--------CccccCCcchHHHHHHHHHHHH
Confidence 9999988831 2445678999999999999863
No 17
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=99.81 E-value=2.5e-20 Score=178.77 Aligned_cols=238 Identities=13% Similarity=0.152 Sum_probs=149.1
Q ss_pred HHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCCc--------
Q 017125 82 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT-------- 150 (377)
Q Consensus 82 ~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~~-------- 150 (377)
+....+++++.. ..++ .....+++++|..++..+|+.+.+.+ +..|++.+.++++|.||+++++..
T Consensus 129 ev~~~~L~~l~~~a~~~~~--~~~~~~vitvPa~~~~~~r~~~~~a~-~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~ 205 (409)
T 4gni_A 129 EIATRYLRRLVGAASEYLG--KKVTSAVITIPTNFTEKQKAALIAAA-AAADLEVLQLISEPAAAVLAYDARPEATISDK 205 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHT--SCCCEEEEEECTTCCHHHHHHHHHHH-HHTTCEEEEEEEHHHHHHHHTTC------CCE
T ss_pred HHHHHHHHHHHHHHHHHhC--CCCCeEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEEcCHHHHHHHHhcccccCCCCC
Confidence 344555555531 2333 33467999999999999999877776 889999999999999999998754
Q ss_pred eEEEEeCCCCceEEEEee--Ccee-cccceEEecccHHHHHHHHHHHHHHc-----C--CCCcChhH-----HHHHHHHH
Q 017125 151 TGIVLDSGDGVSHTVPIY--EGYA-LPHAILRLDLAGRDLTDALMKILTER-----G--YSFTTTAE-----REIVRDMK 215 (377)
Q Consensus 151 ~~lVVDiG~~~t~v~~v~--~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~-----~--~~~~~~~~-----~~~~~~ik 215 (377)
+.+|+|+|+++|+++.+. +|.. +.......++||.++++.|.+++..+ + .+...... ...++.+|
T Consensus 206 ~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K 285 (409)
T 4gni_A 206 IIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTK 285 (409)
T ss_dssp EEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHH
Confidence 589999999999999863 3321 12222357999999999999888642 1 11111000 12355555
Q ss_pred HhcceeccCHHHHHHHhccCCCcceEEEc---CCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHH
Q 017125 216 EKLAYIALDYEQELETAKISSAVEKSYEL---PDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIR 292 (377)
Q Consensus 216 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~l---pd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~ 292 (377)
+.++.. ....+.+ .++....+.-.|..+ |-++.|- ...+.+.|.+.+.... ..
T Consensus 286 ~~ls~~----------------~~~~i~i~~~~~~~~~~~~itr~~~-~~~~~~~-----~~~i~~~i~~~l~~~~--~~ 341 (409)
T 4gni_A 286 RALSRS----------------TNASFSVESLIDGLDFASTINRLRY-ETIARTV-----FEGFNRLVESAVKKAG--LD 341 (409)
T ss_dssp HHHHHS----------------SEEEEEEEEEETTEEEEEEEEHHHH-HHHTHHH-----HHHHHHHHHHHHHHTT--CC
T ss_pred HhCCCC----------------CceEEEeecccCCcceEEEeeHHHH-HHHHHHH-----HHHHHHHHHHHHHHcC--CC
Confidence 544311 1112222 123222211112111 2233331 0114455555555442 22
Q ss_pred HHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEE------ECCCCCccccchhhhhhhccc
Q 017125 293 KDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKV------VAPPERKYSVWIGGSILASLS 352 (377)
Q Consensus 293 ~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v------~~~~~~~~~~w~Gasi~a~l~ 352 (377)
...++.|+||||+|++|++.++|++.+.. .+++ ....+|+.++-.||+++|...
T Consensus 342 ~~~i~~V~LvGG~s~~p~v~~~l~~~f~~------~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~ 401 (409)
T 4gni_A 342 PLDVDEVIMSGGTSNTPRIAANFRYIFPE------STRILAPSTDPSALNPSELQARGAALQASLI 401 (409)
T ss_dssp GGGCCEEEEESGGGGCHHHHHHHHHHSCT------TSEEESTTTCTTCCCTTTHHHHHHHHHHHHH
T ss_pred HHHCCEEEEECCccccHHHHHHHHHHcCC------ccccccccccCCCcCHHHHHHHHHHHHhhhh
Confidence 34568999999999999999988877732 2355 344688999999999998874
No 18
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=99.77 E-value=5.6e-19 Score=176.85 Aligned_cols=302 Identities=17% Similarity=0.180 Sum_probs=179.0
Q ss_pred CCEEEeCCCCceEEeeeCCCCCC--------CCCCceeeeeCCCCccccCCCccceeccchhccc------Ccceeeccc
Q 017125 8 QPLVCDNGTGMVKAGFAGDDAPR--------AVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKR------GILTLKYPI 73 (377)
Q Consensus 8 ~~viiD~Gs~~~k~G~~~~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~------~~~~~~~p~ 73 (377)
.+|.||+||+++.+++..+..|. ..+||+++...+ ...++|..|.... ....+++-+
T Consensus 3 ~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Krll 73 (605)
T 4b9q_A 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQD---------GCTLVGQPAKRQAVTNPQNTLFAIKRLI 73 (605)
T ss_dssp CEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTT---------SCEEESHHHHHTTTTCGGGEECCGGGTT
T ss_pred cEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCC---------CcEEecHHHHHHHHhCCCcEehhhHHhh
Confidence 57999999999999987544333 344666655322 2355666554321 111111111
Q ss_pred c-------------------------------CCcc-CCHHHHHHHHHHhc---ccccccCCCCCcEEEeeCCCCCHHhH
Q 017125 74 E-------------------------------HGIV-NNWDDMEKIWHHTF---YNELRVAPEEHPVLLTEAPLNPKANR 118 (377)
Q Consensus 74 ~-------------------------------~g~i-~d~~~~~~~~~~~~---~~~L~~~~~~~~vvl~~~~~~~~~~~ 118 (377)
. .|.. ...+....+|+++. ...|+. .-..+++++|..++..+|
T Consensus 74 G~~~~d~~v~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qr 151 (605)
T 4b9q_A 74 GRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGE--PVTEAVITVPAYFNDAQR 151 (605)
T ss_dssp TCBTTSHHHHHHHTTCSSEEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHTS--CCCEEEEEECTTCCHHHH
T ss_pred CCCCCCHHHHHHhhcCCeEEEEcCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHH
Confidence 0 1111 12234445555543 123433 345799999999999999
Q ss_pred HHHHhhhcccCCCCeEEEechhhhhhhhcCC------ceEEEEeCCCCceEEEEeeCce----e---cccceEEecccHH
Q 017125 119 EKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPIYEGY----A---LPHAILRLDLAGR 185 (377)
Q Consensus 119 ~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~------~~~lVVDiG~~~t~v~~v~~g~----~---~~~~~~~~~~GG~ 185 (377)
+.+.+.+ +.+|++.+.++++|.||++++|. .+.+|+|+|+++++++.+.-+. . +.......++||.
T Consensus 152 ~a~~~Aa-~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~ 230 (605)
T 4b9q_A 152 QATKDAG-RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGE 230 (605)
T ss_dssp HHHHHHH-HHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHH
T ss_pred HHHHHHH-HHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChH
Confidence 8877766 88999999999999999998863 4679999999999999886443 1 1122234689999
Q ss_pred HHHHHHHHHHHHc-----CCCCcChhH-----HHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCC--C-c--EE
Q 017125 186 DLTDALMKILTER-----GYSFTTTAE-----REIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPD--G-Q--VI 250 (377)
Q Consensus 186 ~i~~~l~~~l~~~-----~~~~~~~~~-----~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd--~-~--~i 250 (377)
++++.+.+++..+ +.+...... ...++..|..++.... ......+...+ | . .+
T Consensus 231 d~D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~------------~~i~~~~~~~~~~g~~~~~~ 298 (605)
T 4b9q_A 231 DFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQ------------TDVNLPYITADATGPKHMNI 298 (605)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSE------------EEEEEEEEEECSSSEEEEEE
T ss_pred HHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCC------------eEEEEeeeccCCCCCeeEEE
Confidence 9999999888642 333321111 2345566665542210 00011111111 1 1 12
Q ss_pred ecCCccccccccCCCCccCCCCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEE
Q 017125 251 TIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIK 330 (377)
Q Consensus 251 ~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~ 330 (377)
.++...| |-++.|- ...+.+.|.+++.... ....-++.|+||||+|++|++.+++++.+.. .
T Consensus 299 ~itr~~~---e~l~~~~-----~~~i~~~v~~~L~~a~--~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~--------~ 360 (605)
T 4b9q_A 299 KVTRAKL---ESLVEDL-----VNRSIEPLKVALQDAG--LSVSDIDDVILVGGQTRMPMVQKKVAEFFGK--------E 360 (605)
T ss_dssp EEEHHHH---HHHHHHH-----HHHTTHHHHHHHHHTT--CCGGGCSEEEEESGGGGSHHHHHHHHHHHTS--------C
T ss_pred EEeHHHH---HHHHHHH-----HHHHHHHHHHHHHHcC--CCHHHCcEEEEeCCccCchHHHHHHHHHhcc--------C
Confidence 2222211 1122220 0013344445554332 1223457899999999999999999988832 2
Q ss_pred EECCCCCccccchhhhhhhcc
Q 017125 331 VVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 331 v~~~~~~~~~~w~Gasi~a~l 351 (377)
+....+|+.++-.||+++|..
T Consensus 361 ~~~~~nPdeaVA~GAai~a~~ 381 (605)
T 4b9q_A 361 PRKDVNPDEAVAIGAAVQGGV 381 (605)
T ss_dssp CCSSSCTTTHHHHHHHHHHHH
T ss_pred cCCCcChhHHHHHhHHHHHHH
Confidence 334568899999999999874
No 19
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=99.74 E-value=1.3e-17 Score=158.06 Aligned_cols=172 Identities=16% Similarity=0.232 Sum_probs=109.4
Q ss_pred HHHHHhhhcccCCCCeEEEechhhhhhhhcC-------CceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHH
Q 017125 118 REKMTQIMFETFNTPAMYVAIQAVLSLYASG-------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDA 190 (377)
Q Consensus 118 ~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g-------~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~ 190 (377)
.+.+.+.+ +.+|++...+..+|+|++.+++ ..+.+|||+|+++|+++.+.+|.++ .....++||.++++.
T Consensus 153 v~~~~~~~-~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~--~~~~~~~GG~~i~~~ 229 (377)
T 2ych_A 153 VAGVLEAL-RGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPL--AVRVLTLSGKDFTEA 229 (377)
T ss_dssp HHHHHHHH-HHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEE--EEEEESCSHHHHHHH
T ss_pred HHHHHHHH-HHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEE--EEEeeechHHHHHHH
Confidence 35555444 8899999999999999998864 2457999999999999999999887 557889999999999
Q ss_pred HHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCC
Q 017125 191 LMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIG 270 (377)
Q Consensus 191 l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~ 270 (377)
+.+.+ +. ..+.++++|.+++....+..++ ...+.+++ ..+.++.+. +.|++ +|.
T Consensus 230 i~~~~---~~------~~~~aE~~K~~~~~~~~~~~~~----------~~~i~~~~-~~~~i~~~~--~~~~i-~~~--- 283 (377)
T 2ych_A 230 IARSF---NL------DLLAAEEVKRTYGMATLPTEDE----------ELLLDFDA-ERERYSPGR--IYDAI-RPV--- 283 (377)
T ss_dssp HHHHT---TC------CHHHHHHHHHHTC------------------------------------C--HHHHH-HHH---
T ss_pred HHHHh---CC------CHHHHHHHHhhccccccccccc----------cccccccc-ccccCCHHH--HHHHH-HHH---
Confidence 98743 22 2456899999988764321110 01111221 112222211 11111 110
Q ss_pred CCCCChHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHH
Q 017125 271 MESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEIT 320 (377)
Q Consensus 271 ~~~~~l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~ 320 (377)
...+.+.|.+++..++...+....++|+||||+|++||+.+++++.+.
T Consensus 284 --~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~ 331 (377)
T 2ych_A 284 --LVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLG 331 (377)
T ss_dssp --HHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhC
Confidence 112555566666655445556678999999999999999999999994
No 20
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=99.72 E-value=4.7e-18 Score=158.92 Aligned_cols=178 Identities=15% Similarity=0.125 Sum_probs=126.7
Q ss_pred CEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCcccc------C--------CCccceeccchhcccCcceeecccc
Q 017125 9 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG------M--------GQKDAYVGDEAQSKRGILTLKYPIE 74 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~------~--------~~~~~~vg~~~~~~~~~~~~~~p~~ 74 (377)
.+.||+|+.++|+-. ++ .-.+.+||.++.........+ . .+..++||++|. +|+.
T Consensus 23 ~igiDlG~~~tkv~~-~~-g~~~~~PSvva~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~vG~~A~---------~~l~ 91 (346)
T 2fsj_A 23 VVGLDVGYGDTKVIG-VD-GKRIIFPSRWAVTETESWGIGGKIPVLSTDGGQTKFIYGKYASGNNIR---------VPQG 91 (346)
T ss_dssp EEEEEECSSEEEEEC-GG-GCEEEEESCEEEECCSCC----CCCCBBSSTTSSEEEEGGGCCSSCCB---------CCSS
T ss_pred EEEEecCCcceeEEe-cC-CCEEEecceeeeccccccCcCcceEEEEecccccccCCcEEEEcccee---------cccC
Confidence 689999999999863 33 234568888876654321100 0 134566786653 8899
Q ss_pred CCccCCHHHHHHHHHHhccccc-ccCCCCCcEE--EeeCCCCCHHhHHHHHhhhccc-------------CCCCeEEEec
Q 017125 75 HGIVNNWDDMEKIWHHTFYNEL-RVAPEEHPVL--LTEAPLNPKANREKMTQIMFET-------------FNTPAMYVAI 138 (377)
Q Consensus 75 ~g~i~d~~~~~~~~~~~~~~~L-~~~~~~~~vv--l~~~~~~~~~~~~~l~~~lfe~-------------~~~~~v~~~~ 138 (377)
.+.+.| +..+.++.+.+.+.. ........++ ++.|......+|+.+.+.+... +++..+.+++
T Consensus 92 ~~~~~~-~~~~~ll~~~l~~~~~~~~~~~~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~ 170 (346)
T 2fsj_A 92 DGRLAS-KEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRP 170 (346)
T ss_dssp TTCTTS-TTTHHHHHHHHHHHCCCC---CEEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEE
T ss_pred CCcccC-hhHHHHHHHHHHHhhhccCCCceEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEc
Confidence 999988 666666666664332 1112345689 9999988888888888776442 1256799999
Q ss_pred hhhhhhhhc--C-----C-ceEEEEeCCCCceEEEEee--CceecccceEEecccHHHHHHHHHHHHHHc
Q 017125 139 QAVLSLYAS--G-----R-TTGIVLDSGDGVSHTVPIY--EGYALPHAILRLDLAGRDLTDALMKILTER 198 (377)
Q Consensus 139 ~~~~a~~~~--g-----~-~~~lVVDiG~~~t~v~~v~--~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~ 198 (377)
+|.+|++++ + . .+.+|||+|+++|+++.+. +|.++.......++||.++++.+.+.++++
T Consensus 171 Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~~v~~~s~~~~lGg~~i~~~I~~~i~~~ 240 (346)
T 2fsj_A 171 QGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVELSFSLQIGVGDAISALSRKIAKE 240 (346)
T ss_dssp TTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTEECGGGCEEESCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCEEEeecCCCcchhHHHHHHHHHHHHHHH
Confidence 999999974 2 1 4569999999999999998 787766556788999999999998877543
No 21
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=99.69 E-value=1.9e-16 Score=151.27 Aligned_cols=200 Identities=11% Similarity=0.136 Sum_probs=132.2
Q ss_pred HHhHHHHHhhhcccCCCCeEEEechhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHH
Q 017125 115 KANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTD 189 (377)
Q Consensus 115 ~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~ 189 (377)
+...+.+.+.+ +..|+....++.+|+|+++++.. .+.+|||+|+++|+++.+.+|.++ .....++||+++|+
T Consensus 167 ~~~v~n~~~~~-~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~g~~~--~~~~i~~GG~~it~ 243 (419)
T 4a2a_A 167 LKVYEMFYNFL-QDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKNGVPI--KISYVPVGMKHVIK 243 (419)
T ss_dssp HHHHHHHHHHH-HTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEETTEEE--EEEEESCCHHHHHH
T ss_pred HHHHHHHHHHH-HHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEECCEEE--EEEecccHHHHHHH
Confidence 34555666655 88999999999999999998764 368999999999999999999988 56789999999999
Q ss_pred HHHHHHHHcCCCCcChhHHHHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCC--C-cEEecCCccc-cccccCCC
Q 017125 190 ALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPD--G-QVITIGAERF-RCPEVLFQ 265 (377)
Q Consensus 190 ~l~~~l~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd--~-~~i~i~~~~~-~~~E~lf~ 265 (377)
.+...+. ...+.+|++|.+++...... .....+.+|. + ....++...+ .+.+..++
T Consensus 244 dIa~~l~---------~~~~~AE~iK~~~g~a~~~~-----------~~~~~i~v~~~~~~~~~~is~~~l~~ii~p~ve 303 (419)
T 4a2a_A 244 DVSAVLD---------TSFEESERLIITHGNAVYND-----------LKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLR 303 (419)
T ss_dssp HHHHHHT---------CCHHHHHHHHHHHCCSCCTT-----------CCCCEEEEECTTSCSEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHC---------CCHHHHHHHHHHhccCcccC-----------CCCceEEEeecCCccceEEcHHHHHHHHHHHHH
Confidence 9998762 13467999999988653210 1112233322 1 1112211111 11111111
Q ss_pred CccCCCCCCChHHHHHHHHhcCCh----hHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEEC-----C--
Q 017125 266 PSMIGMESAGIHETTYNSIMKCDV----DIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVA-----P-- 334 (377)
Q Consensus 266 p~~~~~~~~~l~~~I~~~i~~~~~----~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~-----~-- 334 (377)
.+.+.|.+.|+.... .......+.|+||||+|++||+.+.+++.+. .++++.. |
T Consensus 304 ---------ei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g------~~vri~~~~~~~p~~ 368 (419)
T 4a2a_A 304 ---------EIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFK------SPVRTGCYANSDRPS 368 (419)
T ss_dssp ---------HHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHT------SCEEECCGGGSSSCC
T ss_pred ---------HHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHC------CCeEEEecCCCCchh
Confidence 145555666655432 1145677899999999999999999999984 2456555 3
Q ss_pred --------CCCccccchhhhhhhccc
Q 017125 335 --------PERKYSVWIGGSILASLS 352 (377)
Q Consensus 335 --------~~~~~~~w~Gasi~a~l~ 352 (377)
.+|.|++-.|-.+++...
T Consensus 369 ~~~~~~~~~~P~~~t~~Gl~~~~~~~ 394 (419)
T 4a2a_A 369 IINADEVANDPSFAAAFGNVFAVSEN 394 (419)
T ss_dssp CBTCHHHHTCGGGHHHHHTTCC----
T ss_pred ccCcccccCCchHHHHHHHHHHHhhc
Confidence 368899999988887653
No 22
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A
Probab=99.55 E-value=7e-15 Score=136.09 Aligned_cols=178 Identities=12% Similarity=0.148 Sum_probs=107.9
Q ss_pred ccCCCCeEEEechhhhhhhhcC-----CceEEEEeCCCCceEEEEeeCcee-cccceEEecccHHHHHHHHHHHHHHcCC
Q 017125 127 ETFNTPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEGYA-LPHAILRLDLAGRDLTDALMKILTERGY 200 (377)
Q Consensus 127 e~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVDiG~~~t~v~~v~~g~~-~~~~~~~~~~GG~~i~~~l~~~l~~~~~ 200 (377)
+.+++..+.++++|++|+++++ ..+.+|||+|+++|+++.+.+|.+ +.......++||.++++.+.+.+.+++.
T Consensus 136 ~~~~i~~v~~~~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~~~ 215 (320)
T 2zgy_A 136 DTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLART 215 (320)
T ss_dssp CCCEEEEEEEEESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEEGGGCCEEEEEEECSCCTHHHHHHHHHHTTCCSB
T ss_pred cEEEEEEEEEecCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEeCCeeEEeeecCCccccHHHHHHHHHHHHHHcCC
Confidence 4566789999999999998763 357899999999999999999876 4334567799999999999999865433
Q ss_pred CCcChhHHHHHHHH-HHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHH
Q 017125 201 SFTTTAEREIVRDM-KEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHET 279 (377)
Q Consensus 201 ~~~~~~~~~~~~~i-k~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~ 279 (377)
++ ....++++ |.+.... +... .. ..|.. +. +.....+..+. .+.+.
T Consensus 216 ~i----~~~~ae~~lk~~~~~~---~~~~--~i----------~~~~~--~~---~~~~~i~~~~~---------~~~~~ 262 (320)
T 2zgy_A 216 KG----SSYLADDIIIHRKDNN---YLKQ--RI----------NDENK--IS---IVTEAMNEALR---------KLEQR 262 (320)
T ss_dssp GG----GHHHHHHHHHTTTCHH---HHHH--HS----------SSSCT--HH---HHHHHHHHHHH---------HHHHH
T ss_pred CC----CHHHHHHHHHHhhhhh---cccc--ee----------cCchh--hH---HHHHHHHHHHH---------HHHHH
Confidence 22 23456666 5542100 0000 00 00000 00 00000000101 13334
Q ss_pred HHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017125 280 TYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 280 I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
|.+.+++. ..++.|+||||+|.+ +.+. +.+.++.. .-++..+++|+++.-.|+.++++
T Consensus 263 i~~~i~~~------~~~~~vvl~GGga~l--l~~~----l~~~~~~~-~~~~~~~~~P~~a~A~G~~~~~~ 320 (320)
T 2zgy_A 263 VLNTLNEF------SGYTHVMVIGGGAEL--ICDA----VKKHTQIR-DERFFKTNNSQYDLVNGMYLIGN 320 (320)
T ss_dssp HHHHHTTC------CCCCEEEEESTTHHH--HHHH----HHHTSCCC-GGGEECCSCGGGHHHHHHHHHHC
T ss_pred HHHHHHhh------cCCCeEEEECChHHH--HHHH----HHHHhCCC-CCceeeCCCcHHHHHHHHHHhcC
Confidence 44444432 234789999999987 4444 44444321 00245577899999999998864
No 23
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Probab=99.48 E-value=1.3e-14 Score=134.65 Aligned_cols=286 Identities=14% Similarity=0.125 Sum_probs=162.8
Q ss_pred CCCCCCCEEEeCCCCceEEeee--C---CCCCCCCCCceeeeeCCCC-------ccccCCCccceeccchhcccCcceee
Q 017125 3 DAEDIQPLVCDNGTGMVKAGFA--G---DDAPRAVFPSIVGRPRHTG-------VMVGMGQKDAYVGDEAQSKRGILTLK 70 (377)
Q Consensus 3 ~~~~~~~viiD~Gs~~~k~G~~--~---~~~P~~~~ps~~~~~~~~~-------~~~~~~~~~~~vg~~~~~~~~~~~~~ 70 (377)
.+++...|.||+|-+++|+-.. + +..-+..|||.++...+.. .....++..++||+.+...
T Consensus 3 ~~~~~~iigiD~G~~~~K~~~~~~~g~~~~~~~~~FpS~v~~~~~~~~~~~~~~~~v~~~G~~Y~vG~~a~~~------- 75 (329)
T 4apw_A 3 NITNEYVMTLDAGKYETKLIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVED------- 75 (329)
T ss_dssp --CCEEEEEEEECSSEEEEEEHHHHHHCCSSTTEEEESCCEECCEESCCCCCSCEEEECSSSEEEESCCSSSC-------
T ss_pred CccCceEEEEecCCceEEEEeccCCCcccceeEEeecccccccccccccCCCCceEEEECCEEEEeCcccccc-------
Confidence 3455567899999999998753 2 1123357888877544321 1233456678888865321
Q ss_pred ccccCCccCCHHHHHHHHHHhcccccccC-CCCCcEEEeeCCCCCH--HhHHHHHhhhccc-------------CCCCeE
Q 017125 71 YPIEHGIVNNWDDMEKIWHHTFYNELRVA-PEEHPVLLTEAPLNPK--ANREKMTQIMFET-------------FNTPAM 134 (377)
Q Consensus 71 ~p~~~g~i~d~~~~~~~~~~~~~~~L~~~-~~~~~vvl~~~~~~~~--~~~~~l~~~lfe~-------------~~~~~v 134 (377)
-+.... +-+..+.++..++-+.+... ..+-.+++..|...-. .+++.+.+.+-.. +.+..+
T Consensus 76 -~~~~~k--~~~~~~~L~l~Aia~~~~~~~~~~v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v 152 (329)
T 4apw_A 76 -SSETSK--TNLIHKLAAYTAITQVLDSNKNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDI 152 (329)
T ss_dssp -SGGGCC--CTTHHHHHHHHHHHTTCCSSSEEEEEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEE
T ss_pred -cccCCc--CchhHHHHHHHHHHHHhccccCceEEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEE
Confidence 111112 12234444444442334322 1223466666655432 2444555544321 224578
Q ss_pred EEechhhhhhhhcC----CceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHH-c-CCCCcChhHH
Q 017125 135 YVAIQAVLSLYASG----RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTE-R-GYSFTTTAER 208 (377)
Q Consensus 135 ~~~~~~~~a~~~~g----~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~-~-~~~~~~~~~~ 208 (377)
.+.|++..+.+... ..+.+|||+|+++|+++.+.+|.++.......++||.++++.+.+.+++ + +..+..
T Consensus 153 ~v~pe~~ga~~~~~~~~~~~~v~vvDiGggTtd~~v~~~g~~~~~~~~~~~~G~~~~~~~i~~~l~~~~~g~~i~~---- 228 (329)
T 4apw_A 153 TIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSLYRNCVVNPSERFIEEHGVKDLIIRVGDALTDLNNGNLITN---- 228 (329)
T ss_dssp EEEEHHHHHHHHSCCCCTTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHTSSSSCSSCSCTTS----
T ss_pred EEEeccHHHHhhcchhhccCCEEEEEeCCCcEEEEEEECCEEeeccccchhhHHHHHHHHHHHHHHhhccCCCCCH----
Confidence 99999999988762 3578999999999999999999998766678999999999999988865 2 222221
Q ss_pred HHHHHHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHHHHhc--
Q 017125 209 EIVRDMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYNSIMK-- 286 (377)
Q Consensus 209 ~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~~i~~-- 286 (377)
..++++|.. +.+.. .+....+..+ .+.+.+ ..+.+.|.+.+++
T Consensus 229 ~~~e~i~~~-g~~~~----------------------g~~~~~~~~~--~i~~~~----------~e~~~~I~~~i~~~~ 273 (329)
T 4apw_A 229 EQAESALNN-GYMKK----------------------GGEIDTESST--VIKKVK----------EKFLKDAIKLIEKRG 273 (329)
T ss_dssp BTTTTCSSS-CSSCE----------------------ECTTCCSTTH--HHHHHH----------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc-CCccc----------------------CCcchhHHHH--HHHHHH----------HHHHHHHHHHHHHcC
Confidence 123333332 11100 0000000000 000000 0123334444432
Q ss_pred CChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 287 CDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 287 ~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+|. .+.+.|+||||+|.+ +.+.+++++ +. ++...++|.++.-.|+-.++..
T Consensus 274 ~~~----~~~~~IvltGGGA~l--~~~~l~~~~----~~----~v~v~~~P~~a~a~G~~~~~~~ 324 (329)
T 4apw_A 274 FKL----DQLDSLIFIGGTTQK--LKEQISKTY----PN----NSIITNNSQWTTCEGLYKVAVA 324 (329)
T ss_dssp CCT----TSCSEEEEESTTHHH--HHHHHHHHS----TT----CEECCSSGGGHHHHHHHHHHHH
T ss_pred CCH----HHccEEEEECChHHH--HHHHHHHHc----CC----CCEecCCChhhHHHHHHHHHhh
Confidence 332 346899999999998 445555543 32 2445678999999999887654
No 24
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus}
Probab=99.43 E-value=1.7e-13 Score=128.18 Aligned_cols=185 Identities=13% Similarity=0.159 Sum_probs=118.5
Q ss_pred CCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCc---------------cccCCCcc-ceeccchhcccCcceeec
Q 017125 8 QPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGV---------------MVGMGQKD-AYVGDEAQSKRGILTLKY 71 (377)
Q Consensus 8 ~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~---------------~~~~~~~~-~~vg~~~~~~~~~~~~~~ 71 (377)
-.|.||+|-.++|+ ..++ -.+.|||.++...+... ....+... ++||+.|...... ..+
T Consensus 5 ~iigiD~G~~~~K~-~~~~--~~~~fPS~v~~~~~~~~~l~~~~~~~~~~~~v~v~~~~~~~y~vG~~A~~~~~~--~~~ 79 (355)
T 3js6_A 5 YVMALDFGNGFVKG-KIND--EKFVIPSRIGRKTNENNQLKGFVDNKLDVSEFIINGNNDEVLLFGNDLDKTTNT--GKD 79 (355)
T ss_dssp EEEEEEECSSEEEE-EETT--EEEEEESEEEECCSSCCSSTTTSCCCCSCEEEEETTCTTCCEEESTTHHHHCSC--CEE
T ss_pred EEEEEEcCCCcEEE-ecCC--eEEEeceeeeecccCcccccccccCCCCceEEEEecCCeEEEEEchhhhhcCcc--ccc
Confidence 47899999999996 4444 24678998875433211 11123445 8899877543111 112
Q ss_pred cc-cCCccCCHHHHHHHHHHhcc---cccccCCCCCcEEEeeCCCCCHHhH-HHHHhhhccc-----------CCCCeEE
Q 017125 72 PI-EHGIVNNWDDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANR-EKMTQIMFET-----------FNTPAMY 135 (377)
Q Consensus 72 p~-~~g~i~d~~~~~~~~~~~~~---~~L~~~~~~~~vvl~~~~~~~~~~~-~~l~~~lfe~-----------~~~~~v~ 135 (377)
.+ ......+-+ .+.++..++. ..+.....+-.+++..|.......+ +.+.+.+... +.+..|.
T Consensus 80 ~~~~~~k~~~~~-~~iL~l~Ala~~~~~~~~~~~~~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~ 158 (355)
T 3js6_A 80 TASTNDRYDIKS-FKDLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVK 158 (355)
T ss_dssp CCCSTTGGGSHH-HHHHHHHHHHHHHTTSCSSEEEEEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEE
T ss_pred ccccCCcccCHH-HHHHHHHHHHHHHHhccCCCceEEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEE
Confidence 22 233333322 2222222221 1111111123578888887766665 4666666432 2236899
Q ss_pred EechhhhhhhhcC-----------CceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHc
Q 017125 136 VAIQAVLSLYASG-----------RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTER 198 (377)
Q Consensus 136 ~~~~~~~a~~~~g-----------~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~ 198 (377)
++++|.+|+++++ ..+.+|||+|+.+|+++.+.+|.++......+++||..+++.+.+.++++
T Consensus 159 v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGggTtd~~v~~~~~~~~~~s~s~~~G~~~~~~~i~~~l~~~ 232 (355)
T 3js6_A 159 IVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVINKGTIDFYKRIASHVSKK 232 (355)
T ss_dssp EEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHTC--
T ss_pred EEeCcHHHHHHHHHccCccccccccCcEEEEEeCCCcEEEEEEcCCEEccccccCcchHHHHHHHHHHHHHHHh
Confidence 9999999999874 35679999999999999999999987777889999999999999998654
No 25
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A
Probab=99.02 E-value=4.4e-10 Score=106.87 Aligned_cols=181 Identities=12% Similarity=0.105 Sum_probs=108.5
Q ss_pred chhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHH
Q 017125 138 IQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVR 212 (377)
Q Consensus 138 ~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~ 212 (377)
.+|.||.+++=. ...++||+|+++|+++.+.+|..+ +...+++||+++|..+..-|. ..+...+|
T Consensus 390 ~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv--~a~~ip~gG~~VT~DIA~~Lg--------t~d~~~AE 459 (610)
T 2d0o_A 390 AEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDI--IATHLAGAGDMVTMIIARELG--------LEDRYLAE 459 (610)
T ss_dssp EHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCE--EEEEEECSHHHHHHHHHHHHT--------CCCHHHHH
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEE--EEEEeccchHHHHHHHHHHhC--------CCCHHHHH
Confidence 788888777632 368999999999999999999888 777899999999999999982 11367899
Q ss_pred HHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEec--CCc-cccccc-cCCCCcc-CCCCCCC--hHH--HHHHH
Q 017125 213 DMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITI--GAE-RFRCPE-VLFQPSM-IGMESAG--IHE--TTYNS 283 (377)
Q Consensus 213 ~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i--~~~-~~~~~E-~lf~p~~-~~~~~~~--l~~--~I~~~ 283 (377)
+||. |+.+.... ... ...+...+++ .+. ...++. .+..|+. ... .+. +.| ++.+.
T Consensus 460 rIK~-YG~A~ve~-------------lf~-~~dede~Iev~~~~lgp~~~~Rv~~~~~~~L~~I-~pR~~vEElelVR~~ 523 (610)
T 2d0o_A 460 EIKK-YPLAKVES-------------LFH-LRHEDGSVQFFSTPLPPAVFARVCVVKADELVPL-PGDLALEKVRAIRRS 523 (610)
T ss_dssp HHHH-SCEEEECS-------------SSE-EEETTSCEEECSSCCCGGGTTCEEEECSSCEEEC-CTTCCHHHHHHHHHH
T ss_pred Hhcc-cCceeecc-------------ccc-ccCCCCeEEEecCCCCcceeeeeecccccceeee-CCCcchHHHHHHHHH
Confidence 9999 88765331 000 0001111111 000 001111 0000111 011 122 333 33333
Q ss_pred HhcC---ChhHHH-----Hh-----hcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECC-----CCCccccchhh
Q 017125 284 IMKC---DVDIRK-----DL-----YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP-----PERKYSVWIGG 345 (377)
Q Consensus 284 i~~~---~~~~~~-----~l-----~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~-----~~~~~~~w~Ga 345 (377)
+++. -..+|. .+ +..||||||+|+++|+.+-.++.|..+ .+++-.+ ..|.|++-.|-
T Consensus 524 ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y-----~VRiGrP~~~gv~gP~fAtAvGL 598 (610)
T 2d0o_A 524 AKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHY-----RLVAGRGNIRGSEGPRNAVATGL 598 (610)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTS-----SCEEEECCGGGTSTTSCHHHHHH
T ss_pred HhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcC-----CeEEecCCccccCCCcHHHHHHH
Confidence 2111 001111 11 256999999999999999999988662 4455443 36889888886
Q ss_pred hhhh
Q 017125 346 SILA 349 (377)
Q Consensus 346 si~a 349 (377)
.+|-
T Consensus 599 lly~ 602 (610)
T 2d0o_A 599 ILSW 602 (610)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 26
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6
Probab=98.99 E-value=4.2e-10 Score=107.36 Aligned_cols=180 Identities=12% Similarity=0.128 Sum_probs=107.3
Q ss_pred chhhhhhhhcCC-----ceEEEEeCCCCceEEEEeeCceecccceEEecccHHHHHHHHHHHHHHcCCCCcChhHHHHHH
Q 017125 138 IQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVR 212 (377)
Q Consensus 138 ~~~~~a~~~~g~-----~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~~~~~~ 212 (377)
.+|.||.+++=. ...++||+|+++|+++.+.+|..+ +...+++||+++|..+..-|. ..+...+|
T Consensus 392 ~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv--~a~~ip~gG~~VT~DIA~~Lg--------~~d~~~AE 461 (607)
T 1nbw_A 392 VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQI--TAVHLAGAGNMVSLLIKTELG--------LEDLSLAE 461 (607)
T ss_dssp CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCE--EEEEEECCHHHHHHHHHHHHT--------CSCHHHHH
T ss_pred ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEE--EEEEeccchHHHHHHHHHHhC--------CCCHHHHH
Confidence 677787776632 368999999999999999999888 777899999999999999982 11367899
Q ss_pred HHHHhcceeccCHHHHHHHhccCCCcceEEEcCCCcEEec--CCc-cccccc-cCCCCc-cCCCCCCC--hHH--HHHHH
Q 017125 213 DMKEKLAYIALDYEQELETAKISSAVEKSYELPDGQVITI--GAE-RFRCPE-VLFQPS-MIGMESAG--IHE--TTYNS 283 (377)
Q Consensus 213 ~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i--~~~-~~~~~E-~lf~p~-~~~~~~~~--l~~--~I~~~ 283 (377)
+||. |+.+.... .... ..+...+++ .+. ...++. .+..|+ +... .+. +.| ++.+.
T Consensus 462 rIK~-YG~A~~e~-------------lf~~-~dede~Iev~~~~lgp~~~~R~~~~~~~~L~~I-~~R~~vEElelVR~~ 525 (607)
T 1nbw_A 462 AIKK-YPLAKVES-------------LFSI-RHENGAVEFFREALSPAVFAKVVYIKEGELVPI-DNASPLEKIRLVRRQ 525 (607)
T ss_dssp HHHH-SCEEEECS-------------SSEE-EETTSCEEECSSCCCGGGTTCEEEEETTEEEEE-CCSSCHHHHHHHHHH
T ss_pred Hhcc-cCceeecc-------------cccc-cCCCCeEEEecCCCCcceeeeeecccccceeee-CCCcchHHHHHHHHH
Confidence 9999 88765331 0000 001111111 000 000111 000000 0011 111 333 33333
Q ss_pred HhcC---ChhHHH----------HhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECC-----CCCccccchhh
Q 017125 284 IMKC---DVDIRK----------DLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAP-----PERKYSVWIGG 345 (377)
Q Consensus 284 i~~~---~~~~~~----------~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~-----~~~~~~~w~Ga 345 (377)
+++. -..+|. ..+..||||||+|+++|+.+-.++.|..+ .+++-.+ ..|.|++-.|-
T Consensus 526 ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~-----~VRiGrP~~~g~~gP~fAtAvGL 600 (607)
T 1nbw_A 526 AKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHY-----GVVAGQGNIRGTEGPRNAVATGL 600 (607)
T ss_dssp HHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTT-----TCEEEECCGGGTSCSCCHHHHHH
T ss_pred HhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcC-----CeEEecCCccccCCchHHHHHHH
Confidence 1111 001111 11256999999999999999999999773 3444433 36788888886
Q ss_pred hhh
Q 017125 346 SIL 348 (377)
Q Consensus 346 si~ 348 (377)
.+|
T Consensus 601 lly 603 (607)
T 1nbw_A 601 LLA 603 (607)
T ss_dssp HHH
T ss_pred HHh
Confidence 655
No 27
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=98.63 E-value=3.8e-08 Score=88.68 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=94.1
Q ss_pred eEEEechhhhhhhhcC---CceEEEEeCCCCceEEEEe-eCceeccc-ceEEecccHHHHHHHHHHHHHHcCCCCcChhH
Q 017125 133 AMYVAIQAVLSLYASG---RTTGIVLDSGDGVSHTVPI-YEGYALPH-AILRLDLAGRDLTDALMKILTERGYSFTTTAE 207 (377)
Q Consensus 133 ~v~~~~~~~~a~~~~g---~~~~lVVDiG~~~t~v~~v-~~g~~~~~-~~~~~~~GG~~i~~~l~~~l~~~~~~~~~~~~ 207 (377)
.+..++++.+++++.. .....|+|+|++++.++-+ .+|..... ...+..-|+-++.+.+.+.| +.+++....
T Consensus 73 ~~~~Vne~~aha~a~~~~~~~~~~vl~lgG~~~~~~~~~~~g~~~~~~~~~~~~~g~G~f~d~~a~~l---~~~~~~~~~ 149 (276)
T 4ehu_A 73 ADKQISELSCHARGVNFIIPETRTIIDIGGQDAKVLKLDNNGRLLNFLMNDKCAAGTGRFLDVMAKII---EVDVSELGS 149 (276)
T ss_dssp CSEECCHHHHHHHHHHHHSTTCCEEEEECSSCEEEEEECTTSCEEEEEEECSCSTTSHHHHHHHHHHH---TCCGGGHHH
T ss_pred CCcccchHHHHHHHHHHhCCCCCeEEEEcCCCceEEEEEecCceEEEEeCCCcCcchhhHHHHHHHHh---ccChhhhHH
Confidence 4567889888877663 3456889999999988877 45544311 12345667777777777766 344332111
Q ss_pred HHHHHHHHH-----hcceeccCHHHHHHHhccCCCcceEEEcCCCcEEecCCccccccccCCCCccCCCCCCChHHHHHH
Q 017125 208 REIVRDMKE-----KLAYIALDYEQELETAKISSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESAGIHETTYN 282 (377)
Q Consensus 208 ~~~~~~ik~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~i~~~~~~~~E~lf~p~~~~~~~~~l~~~I~~ 282 (377)
....-+. ..|.+. ...+...... .+ ... | +-..++.+.|.+
T Consensus 150 --~~~~a~~~~~i~~~~~~f--~~s~~~~~~~-----------~~---------~~~-~---------di~a~~~~~v~~ 195 (276)
T 4ehu_A 150 --ISMNSQNEVSISSTCTVF--AESEVISHLS-----------EN---------AKI-E---------DIVAGIHTSVAK 195 (276)
T ss_dssp --HHTTCSSCCCCCCCSHHH--HHHHHHHHHH-----------TT---------CCH-H---------HHHHHHHHHHHH
T ss_pred --HHhcCCCCCCcCCccchh--hhhHHHHhhh-----------cc---------ccH-H---------HHHHHHHHHHHH
Confidence 0000000 000000 0000000000 00 000 0 001123333433
Q ss_pred HHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 283 SIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 283 ~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.. .-.+....+.|+++||.|..|+++++|++.+. .++..|++|++..-.||+++|.-
T Consensus 196 ~l~~--~~~~~~~~~~vvl~GGva~n~~lr~~l~~~~g--------~~~~~p~~p~~~~A~GAAl~A~~ 254 (276)
T 4ehu_A 196 RVSS--LVKRIGVQRNVVMVGGVARNSGIVRAMAREIN--------TEIIVPDIPQLTGALGAALYAFD 254 (276)
T ss_dssp HHHH--HHHHHCCCSSEEEESGGGGCHHHHHHHHHHHT--------SCEECCSSGGGHHHHHHHHHHHH
T ss_pred HHHH--HHHhcccCCeEEEecCccchHHHHHHHHHHHC--------CCeeeCCCcchHHHHHHHHHHHH
Confidence 3322 12233445789999999999999999988772 25677888999988999999853
No 28
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=97.84 E-value=5.7e-05 Score=67.45 Aligned_cols=47 Identities=17% Similarity=0.388 Sum_probs=38.9
Q ss_pred cCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 297 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 297 ~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+.|+++||.++-|++.+.+.+.|.. ++..+++++++.-+||+++|..
T Consensus 210 ~~i~~~GG~a~n~~~~~~~~~~lg~--------~v~~p~~~~~~~AlGAAl~A~~ 256 (270)
T 1hux_A 210 KDVVMTGGVAQNYGVRGALEEGLGV--------EIKTSPLAQYNGALGAALYAYK 256 (270)
T ss_dssp SSEEEESGGGGCHHHHHHHHHHHCS--------CEECCGGGGGHHHHHHHHHHHH
T ss_pred CeEEEeCccccCHHHHHHHHHHHCC--------CeEeCCCcchHhHHHHHHHHHH
Confidence 6799999999999999999988832 3555667788889999999854
No 29
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=96.86 E-value=0.002 Score=58.67 Aligned_cols=76 Identities=14% Similarity=0.102 Sum_probs=54.5
Q ss_pred CHHhHHHHHhhhcccCCCCeEEEechhh---hhhh----hcC-CceEEEEeCCCCceEEEEeeCceecccceEEecccHH
Q 017125 114 PKANREKMTQIMFETFNTPAMYVAIQAV---LSLY----ASG-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGR 185 (377)
Q Consensus 114 ~~~~~~~l~~~lfe~~~~~~v~~~~~~~---~a~~----~~g-~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~ 185 (377)
.-.+++.+++.+.+..|++ +.++...- ++.. ..+ ..+++|||+|+++|.++-..++.+. .....|+|+-
T Consensus 95 ~A~N~~~fl~~v~~~~G~~-i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~~G~v 171 (315)
T 1t6c_A 95 RAKNAEEFLERVKREVGLV-VEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKGYKVR--EVISLPIGIV 171 (315)
T ss_dssp TSTTHHHHHHHHHHHTCCC-EEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEETTEEE--EEEEECCCHH
T ss_pred cCcCHHHHHHHHHHHHCCC-EEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEeCCcee--eEEEEeccHH
Confidence 3455667777777778876 34444322 2221 123 5689999999999999999999886 5678999999
Q ss_pred HHHHHHH
Q 017125 186 DLTDALM 192 (377)
Q Consensus 186 ~i~~~l~ 192 (377)
.+++.+.
T Consensus 172 ~l~e~~~ 178 (315)
T 1t6c_A 172 NLTETFF 178 (315)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9888763
No 30
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=96.73 E-value=0.0059 Score=54.82 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=39.7
Q ss_pred HHhhhcccCCCCeEEEechhhhhhhhc-----CCceEEEEeCCCCceEEEEeeCceecc
Q 017125 121 MTQIMFETFNTPAMYVAIQAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 121 l~~~lfe~~~~~~v~~~~~~~~a~~~~-----g~~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
+.+.+ +.+++| |.+.++.-+++++. +..+.++|-+|.+ +-...+.||+++.
T Consensus 87 l~~~l-~~~~~p-v~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtG-iG~giv~~G~l~~ 142 (292)
T 2gup_A 87 WYEAL-SSYQLP-VHLENDANCVGLSELLAHPELENAACVVIGTG-IGGAMIINGRLHR 142 (292)
T ss_dssp HHHHT-GGGCCC-EEEEEHHHHHHHHHHHHCTTCSSEEEEEESSS-EEEEEEETTEEEC
T ss_pred HHHHH-HHcCCC-EEEechHHHHHHHHHHhcCCCCeEEEEEECCc-eEEEEEECCEEEe
Confidence 55666 778887 78899999888873 5678999999976 6677778988764
No 31
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=96.44 E-value=0.02 Score=51.10 Aligned_cols=52 Identities=17% Similarity=-0.018 Sum_probs=41.8
Q ss_pred HhhcCceeccC-CcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhc
Q 017125 294 DLYGNIVLSGG-STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 294 ~l~~nIvl~GG-~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
.-+++|+++|| .+..|++.++|.+.+.-. ..++.-+++++|..-+||+++++
T Consensus 235 ~~i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~-----~~~~~~p~~~~~~gAlGAaL~~~ 287 (287)
T 2ews_A 235 FKTENIVYIGSSFHNNALLRKVVEDYTVLR-----GCKPYYVENGAFSGAIGALYLEK 287 (287)
T ss_dssp TTCCEEEEESGGGTTCHHHHHHHHHHHHHT-----TCEEEECTTGGGHHHHHHHHTCC
T ss_pred CCCCeEEEeCCchhcCHHHHHHHHHHHhhC-----CceEEECCCccHHHHHHHHHhCC
Confidence 33467999999 999999999999776442 34667788899999999998763
No 32
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=96.43 E-value=0.0015 Score=59.46 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=50.8
Q ss_pred HhHHHHHhhhcccCCCCeEEEec---hhhhhhh----hcC--CceEEEEeCCCCceEEEEeeCceecccceEEecccHHH
Q 017125 116 ANREKMTQIMFETFNTPAMYVAI---QAVLSLY----ASG--RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 186 (377)
Q Consensus 116 ~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~----~~g--~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~ 186 (377)
.++..+++.+.+..|++ +.+++ ++-++.+ +.. ..+++|+|||+++|.++.+.++.+. ....+|+|.-.
T Consensus 89 ~N~~~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vr 165 (315)
T 3mdq_A 89 SNKQVLIDRIKKEVNID-VEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGNKNEIL--WKQSFEIGGQR 165 (315)
T ss_dssp TTHHHHHHHHHHHHCCC-EEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEECSSCEE--EEEEESCCHHH
T ss_pred cCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEECCeEe--eeEEEechhhH
Confidence 45556777776777876 33443 3322221 122 3579999999999999999999887 66789999887
Q ss_pred HHHHH
Q 017125 187 LTDAL 191 (377)
Q Consensus 187 i~~~l 191 (377)
+++.+
T Consensus 166 l~e~f 170 (315)
T 3mdq_A 166 LIDRF 170 (315)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 77654
No 33
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=96.08 E-value=0.084 Score=47.91 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=35.6
Q ss_pred ccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceecc
Q 017125 127 ETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
+.+++| |.+.++.-+++++. +..+.++|-+|.+ .-...+.||+++.
T Consensus 94 ~~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~~G~l~~ 146 (321)
T 3vgl_A 94 QRVGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGIIIGNKLRR 146 (321)
T ss_dssp HHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECC
T ss_pred hhhCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEEECCEEec
Confidence 456787 88999988887752 4578899999976 7777788998764
No 34
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=96.07 E-value=0.042 Score=50.11 Aligned_cols=53 Identities=21% Similarity=0.233 Sum_probs=37.3
Q ss_pred CceeccCCcCCcChHHHHHHHHHhhCCC-CceEEEECCCCCccccchhhhhhhc
Q 017125 298 NIVLSGGSTMFPGIADRMSKEITALAPS-SMKIKVVAPPERKYSVWIGGSILAS 350 (377)
Q Consensus 298 nIvl~GG~s~i~g~~~rl~~eL~~~~~~-~~~v~v~~~~~~~~~~w~Gasi~a~ 350 (377)
.|||.||.+..+-|.+++++.+.+.... ...++|..+.-.+.+.-+||+.++-
T Consensus 272 ~IvlgGgi~~~~~l~~~l~~~l~~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~l 325 (327)
T 4db3_A 272 VVALGGGLSNFELIYEEMPKRVPKYLLSVAKCPKIIKAKHGDSGGVRGAAFLNI 325 (327)
T ss_dssp EEEEESGGGGCTHHHHHHHHHGGGGSCTTCCCCEEEECSCGGGHHHHHHHHTTC
T ss_pred EEEEeCcccchHHHHHHHHHHHHHHhccccCCCEEEECCCCCcHHHHHHHHHHh
Confidence 6889999888877888888888776532 2245565554455677889887653
No 35
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=95.97 E-value=0.0032 Score=58.00 Aligned_cols=75 Identities=17% Similarity=0.195 Sum_probs=49.8
Q ss_pred HhHHHHHhhhcccCCCCeEEEec---hhhhhhhhc----C----CceEEEEeCCCCceEEEEeeC--ceec--ccceEEe
Q 017125 116 ANREKMTQIMFETFNTPAMYVAI---QAVLSLYAS----G----RTTGIVLDSGDGVSHTVPIYE--GYAL--PHAILRL 180 (377)
Q Consensus 116 ~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~~~----g----~~~~lVVDiG~~~t~v~~v~~--g~~~--~~~~~~~ 180 (377)
.+++.+++.+.+..|++ +.+++ ++.++..+. . ...++|+|||+++|.++.+.+ +.+. ......+
T Consensus 102 ~N~~~fl~~v~~~tGi~-ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~~~~Sl 180 (343)
T 3cer_A 102 ENREEFEDEIERILGVR-PEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQGAFSM 180 (343)
T ss_dssp TTHHHHHHHHHHHHSSC-CEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCSEEEEE
T ss_pred cCHHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCcccccceeEEE
Confidence 44566777776777775 33443 333332221 2 256999999999999998877 4331 1256789
Q ss_pred cccHHHHHHHH
Q 017125 181 DLAGRDLTDAL 191 (377)
Q Consensus 181 ~~GG~~i~~~l 191 (377)
|+|+..+++.+
T Consensus 181 plG~v~lt~~~ 191 (343)
T 3cer_A 181 NIGSVRMTERH 191 (343)
T ss_dssp SCCHHHHHHHT
T ss_pred ehhHHHHHHHh
Confidence 99999988876
No 36
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=95.81 E-value=0.024 Score=55.17 Aligned_cols=73 Identities=12% Similarity=0.095 Sum_probs=51.7
Q ss_pred HhHHHHHhhhcccCCCCeEEEech---hhhhhhh----cC-CceEEEEeCCCCceEEEEeeCceecccceEEecccHHHH
Q 017125 116 ANREKMTQIMFETFNTPAMYVAIQ---AVLSLYA----SG-RTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 187 (377)
Q Consensus 116 ~~~~~l~~~lfe~~~~~~v~~~~~---~~~a~~~----~g-~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i 187 (377)
.++..+++.+.+..|++ |.+++. +-+...+ .. ...++|+|||+++|.++-..++.+. .....|+|.-.+
T Consensus 96 ~N~~~fl~~i~~~tG~~-i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl 172 (513)
T 1u6z_A 96 LNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI--LVESRRMGCVSF 172 (513)
T ss_dssp TTHHHHHHHHTTTCSSC-EEECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEETTEEE--EEEEESCCHHHH
T ss_pred cCHHHHHHHHHHHHCCC-EEEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEeCCeee--EEEEEeccHHHH
Confidence 45567777777888876 344442 2222221 12 2379999999999999999888877 567899999888
Q ss_pred HHHH
Q 017125 188 TDAL 191 (377)
Q Consensus 188 ~~~l 191 (377)
++.+
T Consensus 173 te~f 176 (513)
T 1u6z_A 173 AQLY 176 (513)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 37
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=95.73 E-value=0.043 Score=53.29 Aligned_cols=73 Identities=21% Similarity=0.207 Sum_probs=51.4
Q ss_pred HHhHHHHHhhhcccCCCCeEEEec---hhhhhhh----hcCCceEEEEeCCCCceEEEEeeCceecccceEEecccHHHH
Q 017125 115 KANREKMTQIMFETFNTPAMYVAI---QAVLSLY----ASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 187 (377)
Q Consensus 115 ~~~~~~l~~~lfe~~~~~~v~~~~---~~~~a~~----~~g~~~~lVVDiG~~~t~v~~v~~g~~~~~~~~~~~~GG~~i 187 (377)
-.++..+++.+.+..|++ |.+++ ++-+... +.....++|||||+++|.++-+.+|.+. .....|+|.-.+
T Consensus 99 A~N~~~fl~~i~~~tG~~-ievIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~~~~~~--~~~Sl~lG~vrl 175 (508)
T 3hi0_A 99 AENGPDFIREAEAILGCE-IEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSCG--EGITLPLGGLRL 175 (508)
T ss_dssp STTHHHHHHHHHHHHTSC-EEECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEETTEEC--CCEEESCCHHHH
T ss_pred CcCHHHHHHHHHHHHCCC-eEEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEeeCCeee--eEEEecceEEeh
Confidence 355566777776778876 34443 2222222 2233578999999999999999999887 667889999877
Q ss_pred HHH
Q 017125 188 TDA 190 (377)
Q Consensus 188 ~~~ 190 (377)
++.
T Consensus 176 ~e~ 178 (508)
T 3hi0_A 176 SEQ 178 (508)
T ss_dssp HHH
T ss_pred hhc
Confidence 763
No 38
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=95.67 E-value=0.042 Score=49.97 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=35.5
Q ss_pred ccC-CCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceecc
Q 017125 127 ETF-NTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 127 e~~-~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
+.+ ++| |++.++.-+++++- +..+.++|-+|.+ .-...|.||+++.
T Consensus 115 ~~~~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~gii~~G~l~~ 168 (321)
T 3r8e_A 115 SEFPHIH-FKIENDAKCAALGEYYFGENKRMQTFILLALGTG-VGSGVMMNGKLFI 168 (321)
T ss_dssp HHCTTSE-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECC
T ss_pred HHcCCCC-EEEEchHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEec
Confidence 456 776 78889988887652 4578999999976 7777788998875
No 39
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=95.43 E-value=0.31 Score=43.55 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=38.3
Q ss_pred CceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 298 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 298 nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.|||.||.+..+.|.+++++.+...... .+++..+.-.+.+.-.||+.++..
T Consensus 240 ~IvlgGgi~~~~~~~~~l~~~l~~~~~~--~~~i~~s~lg~~a~~~GAa~l~~~ 291 (297)
T 4htl_A 240 HIFIGGGITSRPTFIAELKHHMESFGLR--DTIIETATHKNQAGLLGAVYHFLQ 291 (297)
T ss_dssp EEEEESGGGGSTTHHHHHHHHHTTTCCT--TCEEEECSCTTTHHHHHHHHHHHH
T ss_pred EEEEeCcccccHHHHHHHHHHHHHhccC--CCeEEECCcCChHHHHhHHHHHHH
Confidence 5899999999999999999999866543 234544444466788899877643
No 40
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=95.28 E-value=0.13 Score=46.24 Aligned_cols=54 Identities=15% Similarity=0.108 Sum_probs=36.2
Q ss_pred CceeccCCc-CC-cChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 298 NIVLSGGST-MF-PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 298 nIvl~GG~s-~i-~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.|||.||.+ .. +-|.+++++.+.+........++..+.-.+.+.-+||+.++-.
T Consensus 240 ~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~~~ 295 (302)
T 3vov_A 240 VVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAEAGLLGAALTAYL 295 (302)
T ss_dssp EEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSSGGGHHHHHHHHHHHH
T ss_pred EEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCCCCcHHHHHHHHHHHH
Confidence 588888887 66 4588999999988764332233444444456778899877643
No 41
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=95.13 E-value=0.062 Score=48.75 Aligned_cols=46 Identities=15% Similarity=0.183 Sum_probs=35.3
Q ss_pred ccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceecc
Q 017125 127 ETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
+.+++| |.+.++.-+++++. +..+.++|-+|.+ +-...+.||+++.
T Consensus 106 ~~~~~p-v~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtG-iG~giv~~G~l~~ 158 (326)
T 2qm1_A 106 SALGIP-FALDNDANVAALGERWKGAGENNPDVIFITLGTG-VGGGIVAAGKLLH 158 (326)
T ss_dssp HHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEEETTEECC
T ss_pred HHhCCC-EEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEECCEEee
Confidence 446777 78899998887752 4578999999987 6677788988764
No 42
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=95.09 E-value=0.063 Score=49.33 Aligned_cols=56 Identities=9% Similarity=0.067 Sum_probs=41.3
Q ss_pred HHHhhcCceeccC-CcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhh
Q 017125 292 RKDLYGNIVLSGG-STMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 292 ~~~l~~nIvl~GG-~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
++.-+++|+++|| .++.|++.+.|.+.|.---.. .+++.-+++++|..-+||++++
T Consensus 302 ~~~~i~~IvftGgfla~n~~~~~~L~~~l~~ws~g--~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 302 LNENIDRVVFVGNFLRINMVSMKLLAYAMDFWSKG--QLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp HHHTCCCEEEESGGGCSSSHHHHHHHHHHHHHTTT--SCCEEEETTTTCHHHHHHHHHH
T ss_pred HHcCCCeEEEeCcccccCHHHHHHHHHHHhhhhcC--CeeEEEcCCccHHHHHHHHHHh
Confidence 3334568999999 999999999999988532111 2344556678999999998864
No 43
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=93.60 E-value=0.039 Score=49.84 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=23.5
Q ss_pred ceEEEEeCCCCceEEEEeeCceecc
Q 017125 150 TTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 150 ~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
.++++||||+.+|+|+|+.+|+++.
T Consensus 127 ~~~llvDIGsTTTDIipi~~G~pl~ 151 (334)
T 3cet_A 127 ENCILVDMGSTTTDIIPIVEGKVVA 151 (334)
T ss_dssp SSEEEEEECSSCEEEEEEETTEECC
T ss_pred CCEEEEEcCcchhhhhhhcCCeecc
Confidence 5799999999999999999999985
No 44
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=93.18 E-value=1.1 Score=40.71 Aligned_cols=91 Identities=14% Similarity=0.172 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcccccccCCC--CCcEEEeeCCCCCHHhHHHHHhhhcccCC--CCeEEEechhhhhhhhcCCceEEEEe
Q 017125 81 WDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSLYASGRTTGIVLD 156 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~L~~~~~--~~~vvl~~~~~~~~~~~~~l~~~lfe~~~--~~~v~~~~~~~~a~~~~g~~~~lVVD 156 (377)
++.+.+.++.++ +..+..+. -..+-+..|-.........+.+.+-+.++ ...|.+.++.-+++++....++++|-
T Consensus 49 ~~~i~~~i~~~~-~~~~~~~~~~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a~~~~~~v~v~ 127 (347)
T 2ch5_A 49 VERINEMVNRAK-RKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATATPDGGVVLI 127 (347)
T ss_dssp HHHHHHHHHHHH-HHHTCCTTCCBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHH-HhcCCCcccceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHhhCCCCcEEEE
Confidence 345555555554 22233222 24577778877665544455555555565 13478889988888875335778888
Q ss_pred CCCCceEEEEeeCcee
Q 017125 157 SGDGVSHTVPIYEGYA 172 (377)
Q Consensus 157 iG~~~t~v~~v~~g~~ 172 (377)
+|.+.-......+|..
T Consensus 128 ~GTGig~~~v~~~G~~ 143 (347)
T 2ch5_A 128 SGTGSNCRLINPDGSE 143 (347)
T ss_dssp ESSSEEEEEECTTSCE
T ss_pred EcCCceeEEEcCCCCE
Confidence 8876544332236644
No 45
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=93.16 E-value=0.21 Score=45.26 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=34.7
Q ss_pred ccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceecc
Q 017125 127 ETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
+.+++| |.+.++.-+++++. +..+.++|-+|.+ .-...|.+|++..
T Consensus 118 ~~~~~p-v~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtG-iG~giv~~G~l~~ 170 (327)
T 2ap1_A 118 ARLDRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLVLNGKPIT 170 (327)
T ss_dssp HHHTSC-EEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSS-EEEEEEETTEEEC
T ss_pred HHHCCC-EEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCc-EEEEEEECCEEee
Confidence 456777 88999998888752 3468899999876 6677788988764
No 46
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=93.09 E-value=0.61 Score=40.97 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=16.2
Q ss_pred CEEEeCCCCceEEeeeCC
Q 017125 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~ 26 (377)
.++||+|.+++|+|+..+
T Consensus 4 lL~IDIGNT~iK~gl~d~ 21 (266)
T 3djc_A 4 ILCIDVGNSHIYGGVFDG 21 (266)
T ss_dssp EEEEEECSSEEEEEEEET
T ss_pred EEEEEECCCeEEEEEEEC
Confidence 689999999999998855
No 47
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=93.03 E-value=0.33 Score=44.30 Aligned_cols=46 Identities=20% Similarity=0.206 Sum_probs=34.3
Q ss_pred ccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceecc
Q 017125 127 ETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
+.+++| |.+.++.-+++++. +..+.++|-+|.+ .-...+.+|++..
T Consensus 129 ~~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~v~i~~GtG-iG~gii~~G~l~~ 181 (343)
T 2yhw_A 129 DTLHLP-VWVDNDGNCAALAERKFGQGKGLENFVTLITGTG-IGGGIIHQHELIH 181 (343)
T ss_dssp HHHCSC-EEEEEHHHHHHHHHHHTSTTTTCSCEEEEEESSS-EEEEEEETTEECC
T ss_pred HHHCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCC-EEEEEEECCEEec
Confidence 445777 78888888887753 3568899999976 6677788988764
No 48
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=91.63 E-value=0.86 Score=40.05 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=15.5
Q ss_pred CEEEeCCCCceEEeeeCC
Q 017125 9 PLVCDNGTGMVKAGFAGD 26 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~~ 26 (377)
-++||+|.+++|+|+..+
T Consensus 2 lL~IDIGNT~ik~gl~~~ 19 (268)
T 2h3g_X 2 IFVLDVGNTNAVLGVFEE 19 (268)
T ss_dssp EEEEEECSSEEEEEEEET
T ss_pred EEEEEECcCcEEEEEEEC
Confidence 378999999999998854
No 49
>3zx3_A Ectonucleoside triphosphate diphosphohydrolase 1; domain rotation, purinergic signaling; 1.70A {Rattus norvegicus} PDB: 3zx2_A* 3zx0_A*
Probab=89.73 E-value=1.2 Score=42.16 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=47.1
Q ss_pred HHHHHHHHHhccccccc-CCCCCcEEEeeCCCCC------HHhHHHHHhhhcccC---CC--CeEEEech---h----hh
Q 017125 82 DDMEKIWHHTFYNELRV-APEEHPVLLTEAPLNP------KANREKMTQIMFETF---NT--PAMYVAIQ---A----VL 142 (377)
Q Consensus 82 ~~~~~~~~~~~~~~L~~-~~~~~~vvl~~~~~~~------~~~~~~l~~~lfe~~---~~--~~v~~~~~---~----~~ 142 (377)
+.++.+++++- +.... ..+..||.+.-..-+. ...++.+++.+-+.+ ++ ..+.++.. . ++
T Consensus 89 ~~l~~Ll~~a~-~~vp~~~~~~tpi~~~ATAgmR~l~~~~~~~~~~il~~v~~~l~~~~f~~~~v~iisG~eEg~y~wi~ 167 (452)
T 3zx3_A 89 AYLAECMKMST-ERIPASKQHQTPVYLGATAGMRLLRMESKQSADEVLAAVSRSLKSYPFDFQGAKIITGQEEGAYGWIT 167 (452)
T ss_dssp HHHHHHHHHHH-HHSCHHHHTTCEEEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHTSSSEEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HhCCHHHcCCccEEEEeeHHHhhccccCHHHHHHHHHHHHHHHhhCCCCCCceEECCchhhhhhhHHH
Confidence 34555555553 22211 1245677766443321 113344554444433 33 45666653 2 33
Q ss_pred hhhhcCC------ceEEEEeCCCCceEEEEeeCce
Q 017125 143 SLYASGR------TTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 143 a~~~~g~------~~~lVVDiG~~~t~v~~v~~g~ 171 (377)
+.|..|. .+..++|+|+++|.|+-..++.
T Consensus 168 vnyllg~l~~~~~~t~g~lDlGGgStQi~f~~~~~ 202 (452)
T 3zx3_A 168 INYLLGRFKTPGGSTFGALDLGGASTQITFVPLNS 202 (452)
T ss_dssp HHHHTTTTC---CCCCEEEEECSSEEEEEECCSSC
T ss_pred HHhhhccccCCCCCceEEEecCCCceEEEeccCCC
Confidence 3344452 5677899999999999666553
No 50
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=89.21 E-value=2.2 Score=36.90 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=18.3
Q ss_pred CceEEEEeCCCCceEEEEeeCceec
Q 017125 149 RTTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 149 ~~~~lVVDiG~~~t~v~~v~~g~~~ 173 (377)
...++|||+|...|--+. .+|.-+
T Consensus 121 ~~~~iVvD~GTA~T~d~v-~~g~~l 144 (249)
T 3bex_A 121 GKNGIIIDMGTATTVDLV-VNGSYE 144 (249)
T ss_dssp CSCEEEEEESSEEEEEEE-ETTEEE
T ss_pred CCCEEEEEcCCceEEEEE-eCCeEe
Confidence 368999999988765555 887655
No 51
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=85.58 E-value=5 Score=35.37 Aligned_cols=69 Identities=16% Similarity=0.073 Sum_probs=46.7
Q ss_pred cEEEeeCCCCCHHhHHHHHhhhcccCCC-CeEEEechhhhhhhh-cCCceEEEEeCCCCceEEEEeeCceec
Q 017125 104 PVLLTEAPLNPKANREKMTQIMFETFNT-PAMYVAIQAVLSLYA-SGRTTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 104 ~vvl~~~~~~~~~~~~~l~~~lfe~~~~-~~v~~~~~~~~a~~~-~g~~~~lVVDiG~~~t~v~~v~~g~~~ 173 (377)
.+-+..|-.. ......+.+.+-+.+++ ..+.+.++.-+++++ .+..+++++=+|.+..-...+.||+..
T Consensus 62 ~igig~pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aa~ge~g~~~~v~v~~GTGigg~~i~~~G~~~ 132 (291)
T 1zbs_A 62 AVYFYGAGCT-PAKAPMLNEALDSMLPHCDRIEVAGDMLGAARALCGDSEGIACILGTGSNSCLFDGREIKA 132 (291)
T ss_dssp EEEEEETTCC-TTTHHHHHHHHHHHSTTCSEEEEECHHHHHHHHHTTTSCEEEEEESSSEEEEEECSSSEEE
T ss_pred EEEEECCCCC-hHHHHHHHHHHHHhcCCCCcEEEeCcHHHHHHhhcCCCCcEEEEecCChheEEECCCCcEE
Confidence 4666677654 22223455555455665 368999999999987 567788888888776555556789875
No 52
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=74.02 E-value=29 Score=30.54 Aligned_cols=89 Identities=12% Similarity=0.189 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcccccccCCCC---CcEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhc-CCceEEEEe
Q 017125 81 WDDMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS-GRTTGIVLD 156 (377)
Q Consensus 81 ~~~~~~~~~~~~~~~L~~~~~~---~~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~-g~~~~lVVD 156 (377)
++.+.+.++.++ +..+.++.+ ..+-+..|-.........+ +..|.. +. .+.+.++.-+++++. +..++++|-
T Consensus 53 ~~~l~~~i~~~l-~~~~~~~~~i~~~~igig~pG~v~~~~~~~l-~~~~~~-~~-pv~v~NDa~aaa~ge~~~~~~v~v~ 128 (305)
T 1zc6_A 53 WQAVLSTLEAAF-QQAGLPAAPASACAIGLGLSGVHNRQWAGEF-ESQAPG-FA-RLSLATDGYTTLLGAHGGQPGIIVA 128 (305)
T ss_dssp HHHHHHHHHHHH-HHTTCCCCCGGGEEEEEEESCCCTTSHHHHH-HHTCCC-CS-EEEEECHHHHHHHHHTTTSSEEEEE
T ss_pred HHHHHHHHHHHH-HhcCCChhhhccceEEEEecCCCchHHHHHH-HHhCCC-Cc-eEEEECCHHHHHHhhcCCCCeEEEE
Confidence 345555555554 333333333 2366777765543332222 222221 33 488999999988873 557888888
Q ss_pred CCCCceEEEEeeCceec
Q 017125 157 SGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 157 iG~~~t~v~~v~~g~~~ 173 (377)
+|.+..-...+.+|+..
T Consensus 129 ~GTGigg~~i~~~G~~~ 145 (305)
T 1zc6_A 129 LGTGSIGEALYPDGSHR 145 (305)
T ss_dssp ESSSEEEEEECTTSCEE
T ss_pred ecCCeEEEEEeCCCcEE
Confidence 88876433333488654
No 53
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=73.98 E-value=10 Score=35.11 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=34.9
Q ss_pred ccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceecc
Q 017125 127 ETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
+.+++| |++.++.-+++++. +..+.++|-+|.+ +-...+.||+++.
T Consensus 184 ~~~~~p-v~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv~~G~l~~ 236 (406)
T 1z6r_A 184 QHTGVP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHN-VGAGVITDGHLLH 236 (406)
T ss_dssp HHHSSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEETT
T ss_pred HHHCCC-EEEechhHHHHHHHHHhcCCCCCCcEEEEEECCc-EEEEEEECCEEee
Confidence 446777 78888888887752 4568999999976 6677788998764
No 54
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=73.60 E-value=6.2 Score=37.01 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=34.9
Q ss_pred ccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceecc
Q 017125 127 ETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 127 e~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
+.+++| |++.++.-+++++. +..+.++|-+|.+ +-...|.||.++.
T Consensus 206 ~~~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv~~G~l~~ 258 (429)
T 1z05_A 206 KATGLP-VFVANDTRAWALAEKLFGHSQDVDNSVLISIHHG-LGAGIVLDGRVLQ 258 (429)
T ss_dssp HHHCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEETTEECC
T ss_pred HHhCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCc-EEEEEEECCEEee
Confidence 456777 78899988887753 4578999999876 6677788887664
No 55
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=67.38 E-value=3.6 Score=37.66 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=26.0
Q ss_pred ceEEEEeCCCCceEEEEeeC--ceecccceEEecccHH
Q 017125 150 TTGIVLDSGDGVSHTVPIYE--GYALPHAILRLDLAGR 185 (377)
Q Consensus 150 ~~~lVVDiG~~~t~v~~v~~--g~~~~~~~~~~~~GG~ 185 (377)
.+.+|+|+|+++|.++-..+ +.+.......+++||.
T Consensus 140 ~t~~v~DiGGGStei~~~~~~~~~~~~~~~~sl~lG~~ 177 (353)
T 3aap_A 140 KSVGVMDMGGASVQIVFPMPKNAEISKHNQVELNIYGQ 177 (353)
T ss_dssp SCEEEEEECSSEEEEEEECCCCTTSCGGGEEEEEETTE
T ss_pred ccEEEEEeCCCceEEEEecCCccccCCCceEEEEECCc
Confidence 46999999999999997654 3344333467788873
No 56
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=64.46 E-value=20 Score=31.25 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=36.1
Q ss_pred CceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhh
Q 017125 298 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILA 349 (377)
Q Consensus 298 nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a 349 (377)
.|+|.||.+..+-|.+++++.+.+.... ..+++..+.....+...||+.++
T Consensus 236 ~ivlgG~~~~~~~~~~~l~~~l~~~~~~-~~~~i~~~~~~~~a~~~GAa~l~ 286 (289)
T 2aa4_A 236 CVVVGGSVGLAEGYLALVETYLAQEPAA-FHVDLLAAHYRHDAGLLGAALLA 286 (289)
T ss_dssp EEEEEHHHHTSTTHHHHHHHHHTTSCGG-GCCEEEECSCSSCHHHHHHHHHH
T ss_pred EEEEeCcccccHHHHHHHHHHHHHhcCc-cCCEEEECCCCCchHHHHHHHHH
Confidence 5889999887788999999988875321 24455544444567788998775
No 57
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*
Probab=63.69 E-value=19 Score=31.42 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=15.2
Q ss_pred CEEEeCCCCceEEeeeC
Q 017125 9 PLVCDNGTGMVKAGFAG 25 (377)
Q Consensus 9 ~viiD~Gs~~~k~G~~~ 25 (377)
-++||+|-+++|+|+..
T Consensus 25 ~L~IDiGNT~ik~g~~~ 41 (271)
T 2f9w_A 25 ILELDCGNSLIKWRVIE 41 (271)
T ss_dssp EEEEEECSSCEEEEEEE
T ss_pred EEEEEeCCCeeEEEEEe
Confidence 48999999999999875
No 58
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=60.75 E-value=3.6 Score=36.12 Aligned_cols=48 Identities=13% Similarity=0.026 Sum_probs=35.7
Q ss_pred hhcccCCCCeEEEechhhhhhhhc-------CCceEEEEeCCCCceEEEEeeCceecc
Q 017125 124 IMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 124 ~lfe~~~~~~v~~~~~~~~a~~~~-------g~~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
.+-+.+++| +.+.++.-+++++. +. +.++|.+|.+ +-...+.||+++.
T Consensus 91 ~l~~~~~~p-v~v~NDa~aaa~~e~~~g~~~~~-~~v~l~~GtG-iG~gii~~G~l~~ 145 (289)
T 2aa4_A 91 TLEQLTNLP-TIAINDAQAAAWAEFQALDGDIT-DMVFITVSTG-VGGGVVSGCKLLT 145 (289)
T ss_dssp HHHHHHCSC-EEEEEHHHHHHHHHHHTSCTTCC-CEEEEEESSS-EEEEEEETTEEEC
T ss_pred HHHHHHCCC-EEEechHHHHHHHHHHhCCCCCc-eEEEEEeCcc-EEEEEEECCEEee
Confidence 333456777 78889988887753 33 8999999987 6777788998774
No 59
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=60.50 E-value=68 Score=27.86 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=36.6
Q ss_pred cEEEeeCCCCCHHhHHHHHhhhcccCCCCeEEEechhhhhhhhc-CCceEEEEeCCCC
Q 017125 104 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS-GRTTGIVLDSGDG 160 (377)
Q Consensus 104 ~vvl~~~~~~~~~~~~~l~~~lfe~~~~~~v~~~~~~~~a~~~~-g~~~~lVVDiG~~ 160 (377)
.+-+..|-..+......+.+.+-+ ++. .+.+.++.-+++++. ...+.++|-+|.+
T Consensus 62 ~igi~~~G~~~~~~~~~l~~~l~~-~~~-pv~v~ND~~aaa~~e~~~~~~v~l~~GTG 117 (299)
T 2e2o_A 62 VVGMGVAGLDSKFDWENFTPLASL-IAP-KVIIQHDGVIALFAETLGEPGVVVIAGTG 117 (299)
T ss_dssp EEEEEETTCCSHHHHHHHHHHHTT-SSS-EEEEEEHHHHHHHHHHTTSCEEEEEESSS
T ss_pred EEEEEcCCCCchhHHHHHHHHHHh-CCC-CEEEeCcHHHHHhhccCCCCeEEEEecCC
Confidence 566777766443333445555544 665 477888888887764 3568888999988
No 60
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=58.68 E-value=59 Score=29.60 Aligned_cols=133 Identities=11% Similarity=0.064 Sum_probs=0.0
Q ss_pred CCCCCCCCCEEEeCCCCceEEeeeCCCCCCCCCCceeeeeCCCCccccCCCccceeccchhcccCccee-eccccCCccC
Q 017125 1 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL-KYPIEHGIVN 79 (377)
Q Consensus 1 ~~~~~~~~~viiD~Gs~~~k~G~~~~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~~~~-~~p~~~g~i~ 79 (377)
|+..+..-.+.||+|.++++++... ..-.+. .. +.|....
T Consensus 3 ~~n~d~~~~lgiDIGgt~i~~~l~d-~G~il~-----------------------------------~~~~~~~~~~--- 43 (366)
T 3mcp_A 3 MYTNDNRIVMTLDAGGTNFVFSAIQ-GGKEIA-----------------------------------DPVVLPACAD--- 43 (366)
T ss_dssp TTTTCCCEEEEEECSSSEEEEEEEE-TTEECS-----------------------------------CCEEEECCTT---
T ss_pred cCCCCCCEEEEEEECcceEEEEEEE-CCEEEE-----------------------------------EEEEEECCCC---
Q ss_pred CHHHHHHHHHH---hcccccccCCCCCcEEEeeCCCCCH------------HhH--HHHHhhhcccCCCCeEEEechhhh
Q 017125 80 NWDDMEKIWHH---TFYNELRVAPEEHPVLLTEAPLNPK------------ANR--EKMTQIMFETFNTPAMYVAIQAVL 142 (377)
Q Consensus 80 d~~~~~~~~~~---~~~~~L~~~~~~~~vvl~~~~~~~~------------~~~--~~l~~~lfe~~~~~~v~~~~~~~~ 142 (377)
+.+.+.+.+.. .+.+.+. ..-..+-+..|-.... ..+ -.+.+.+-+.+++| |++.++.-|
T Consensus 44 ~~~~~l~~i~~~~~~i~~~~~--~~i~gIGIavPG~Vd~~~G~i~~~~nlp~w~~~~~l~~~L~~~~g~P-V~veNDana 120 (366)
T 3mcp_A 44 CLDKCLGNLVEGFKAIQAGLP--EAPVAISFAFPGPADYQAGIIGDLPNFPSFRGGVALGPFLEDIFGIP-VFINNDGSL 120 (366)
T ss_dssp CHHHHHHHHHHHHHHHHTTCS--SCCCEEEEECCSSEETTTTEECCCTTCGGGTTCBCHHHHHHHHHCSC-EEEECHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhh--cCCeEEEEEecceEeCCCCEEEeCCCcccccCCCCHHHHHHHHHCCC-EEEechhhH
Q ss_pred hhhh--------------------cCCceEEEEeCCCCceEEEEeeCceecccc
Q 017125 143 SLYA--------------------SGRTTGIVLDSGDGVSHTVPIYEGYALPHA 176 (377)
Q Consensus 143 a~~~--------------------~g~~~~lVVDiG~~~t~v~~v~~g~~~~~~ 176 (377)
++++ -+..+.++|-+|.+ .-...|.||+++...
T Consensus 121 aAlgE~~~G~~p~~~~~l~~~g~~~~~~~~v~l~lGtG-IG~givi~G~l~~G~ 173 (366)
T 3mcp_A 121 FAYGEALTGVLPEINRRLREAGSTKRYKNLLGVTLGTG-FGAGVVIDGELLRGD 173 (366)
T ss_dssp HHHHHHHTSHHHHHHHHHHHTTCCCCCCEEEEEEESSS-EEEEEEETTEECCCT
T ss_pred HHHHHHHhCCCcccccccccccccCCCCcEEEEEECCc-ceEEEEECCEEecCC
No 61
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=58.26 E-value=8.2 Score=33.95 Aligned_cols=68 Identities=10% Similarity=0.073 Sum_probs=42.6
Q ss_pred EEEeeCCCCCHHhHHHHHhhhcccCCC-CeEEEechhhhhhhhc-CCceEEEEeCCCCceEEEEeeCceec
Q 017125 105 VLLTEAPLNPKANREKMTQIMFETFNT-PAMYVAIQAVLSLYAS-GRTTGIVLDSGDGVSHTVPIYEGYAL 173 (377)
Q Consensus 105 vvl~~~~~~~~~~~~~l~~~lfe~~~~-~~v~~~~~~~~a~~~~-g~~~~lVVDiG~~~t~v~~v~~g~~~ 173 (377)
+-+..|-.. ......+.+.+-+.++. ..+.+.++.-+++++. +..++++|=+|.+..-...+.||+..
T Consensus 61 igig~pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aalge~g~~~~v~v~~GTGi~g~gi~~~G~~~ 130 (291)
T 1zxo_A 61 VYFYGAGCT-PEKAPVLRRAIADSLPVIGNIKANSDMLAAAHGLCGQKAGIACILGTGSNSCFYNGKEIVS 130 (291)
T ss_dssp CEEECTTCC-TTTTHHHHHHHHHHSCCCSCCEEECSHHHHHHHTTTTSCBEEEEESSSEEEEEECSSSEEE
T ss_pred EEEEcCCCC-HHHHHHHHHHHHHhcCCCceEEEECcHHHHHHhhcCCCCcEEEEeCCChheEEECCCCcEE
Confidence 445455433 21112344444455664 3488999999998864 66778888888776445556788775
No 62
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=52.90 E-value=8.2 Score=35.49 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=34.5
Q ss_pred ccCCCCeEEEechhhhhhhhc---C--CceEEEEeCCCCceEEEEeeCceecc
Q 017125 127 ETFNTPAMYVAIQAVLSLYAS---G--RTTGIVLDSGDGVSHTVPIYEGYALP 174 (377)
Q Consensus 127 e~~~~~~v~~~~~~~~a~~~~---g--~~~~lVVDiG~~~t~v~~v~~g~~~~ 174 (377)
+.+++| |++.++.-+++++. | ..+.++|-+|.+ +-...|.||+++.
T Consensus 186 ~~~~~p-V~v~NDanaaalaE~~~g~~~~~~v~l~~GtG-iG~giv~~G~l~~ 236 (380)
T 2hoe_A 186 EKYGIE-VWVENDADMGAVGEKWYTKRDDSFAWILTGKG-IGAGIIIDGELYR 236 (380)
T ss_dssp HHHCSE-EEEEEHHHHHHHHHHHHTTCCSCEEEEEESSS-CEEEEEETTEECC
T ss_pred HHhCCC-EEEechHHHHHHHHHHhCCCCCcEEEEEeCCc-eEEEEEECCEEec
Confidence 456776 78899988887753 3 378999999976 5677778988764
No 63
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=49.74 E-value=11 Score=33.42 Aligned_cols=68 Identities=19% Similarity=0.211 Sum_probs=44.2
Q ss_pred hHHHHHHHHhcCChhHHHHhhcCceeccCCcCCcChHHHHHHHHHhhCCCC---------ceEEEECCCCCccccchhhh
Q 017125 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSS---------MKIKVVAPPERKYSVWIGGS 346 (377)
Q Consensus 276 l~~~I~~~i~~~~~~~~~~l~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~---------~~v~v~~~~~~~~~~w~Gas 346 (377)
|...|...+.-++++ .|||-||.+..+.|.+.+++.+.+..... .++.+..+.-.+.+..+||+
T Consensus 212 La~~i~nl~~~ldPe-------~IviGGgi~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~l~GAa 284 (302)
T 3epq_A 212 IAQALAQYILILAPX-------XIILGGGVMQQXQVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAGIIGTL 284 (302)
T ss_dssp HHHHHHHHHHHTCCS-------CEEEESSGGGCTHHHHHHHHHHHHHHTTCSCCGGGTTTGGGTEECCTTGGGHHHHHHH
T ss_pred HHHHHHHHHHHHCch-------hhhcCchhhhhHHHHHHHHHHHHHHHhhhccCcccccccCceEEECCcCChHHHHHHH
Confidence 455555555556553 68888888887768888888887754221 12335544445567888998
Q ss_pred hhhc
Q 017125 347 ILAS 350 (377)
Q Consensus 347 i~a~ 350 (377)
.++-
T Consensus 285 ~l~~ 288 (302)
T 3epq_A 285 VLAH 288 (302)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 64
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=49.30 E-value=13 Score=35.10 Aligned_cols=52 Identities=12% Similarity=0.166 Sum_probs=41.5
Q ss_pred CceeccCCcCCcChHHHHHHHHHhhCCC------CceEEEECCCCCccccchhhhhhhccc
Q 017125 298 NIVLSGGSTMFPGIADRMSKEITALAPS------SMKIKVVAPPERKYSVWIGGSILASLS 352 (377)
Q Consensus 298 nIvl~GG~s~i~g~~~rl~~eL~~~~~~------~~~v~v~~~~~~~~~~w~Gasi~a~l~ 352 (377)
.|.+-||....|+|.+++++.+..+++. ..+|.+.... -++-+||+++|...
T Consensus 386 ~V~vdGsv~~~p~f~~~l~~~l~~l~~~~~~~~~~~~v~~~~~~---dgsg~GAAl~aa~~ 443 (457)
T 2yhx_A 386 HIAAXGSXRSYSGFSXNSATXNXNIYGWPQSAXXSKPIXITPAI---DGXGAASXVIXSIA 443 (457)
T ss_dssp EEEEESTTTTSTTHHHHHHHHHHHHHCCCCSSGGGSSEEEEECC---CTTTHHHHHHHHHH
T ss_pred EEEEECCcccCchHHHHHHHHHHHhhCcccccccCcceEEEECC---CchhhhHHHHHHHH
Confidence 4778888888899999999999998754 3467777664 45899999998873
No 65
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=48.38 E-value=44 Score=30.56 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=36.2
Q ss_pred cCceeccCCcCCcC-hHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 297 GNIVLSGGSTMFPG-IADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 297 ~nIvl~GG~s~i~g-~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+.|||+||.+...- |.+++++.+.... .+.+........+.-.||+.++..
T Consensus 297 ~~IvlgGgi~~~~~~l~~~i~~~l~~~~----~~~i~~~~~~~~a~~~GAa~l~~~ 348 (381)
T 1saz_A 297 DFIVLTGGLAHEKEFLVPWITKRVSFIA----PVLVFPGSNEEKALALSALRVLRG 348 (381)
T ss_dssp SEEEEEEGGGGCTTTHHHHHHHHHTTTS----CEEEEEBCCHHHHHHHHHHHHHTT
T ss_pred CEEEEeCcCccChHHHHHHHHHHHHhhc----CeEEEecCcchhHHHHHHHHHHcC
Confidence 47999999988766 8899998887764 345554433334677888877654
No 66
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=42.85 E-value=19 Score=31.88 Aligned_cols=60 Identities=17% Similarity=0.287 Sum_probs=39.0
Q ss_pred CceeccCCcCCcC-hHHHHHHHHHhhCCC---CceEEEECCCCCccccchhhhhhhcccccccc
Q 017125 298 NIVLSGGSTMFPG-IADRMSKEITALAPS---SMKIKVVAPPERKYSVWIGGSILASLSTFQQM 357 (377)
Q Consensus 298 nIvl~GG~s~i~g-~~~rl~~eL~~~~~~---~~~v~v~~~~~~~~~~w~Gasi~a~l~~~~~~ 357 (377)
.|||-||.+..+. +.++|.+.+++.+.. ...+++..+.-...+.-+||+.++.-..|.+-
T Consensus 242 ~IvlgG~v~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~s~lg~~ag~~GAa~la~~~~~~~p 305 (310)
T 3htv_A 242 AVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILAHQRFLPQF 305 (310)
T ss_dssp EEEEECTTTTSTTCCHHHHHHHHHHTSCTTTTTTTCEEEECCCCTTHHHHHHHHHHHHHHCC--
T ss_pred EEEEeCchhccchhHHHHHHHHHHHHhhcccccCCcEEEEcCCCCcHHHHHHHHHHHHHhhccc
Confidence 5888888887765 467788888766531 12456655544567789999988765545443
No 67
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=37.15 E-value=22 Score=32.58 Aligned_cols=54 Identities=17% Similarity=0.136 Sum_probs=36.3
Q ss_pred HHHhhhcccCCCCeEEEechhh---------hhhh-----------------------hcCC--c--eEEEEeCCCCceE
Q 017125 120 KMTQIMFETFNTPAMYVAIQAV---------LSLY-----------------------ASGR--T--TGIVLDSGDGVSH 163 (377)
Q Consensus 120 ~l~~~lfe~~~~~~v~~~~~~~---------~a~~-----------------------~~g~--~--~~lVVDiG~~~t~ 163 (377)
.+.+.+-+.+++|.+ +.++.- ++++ +.++ . +.+++-+|.+ +.
T Consensus 111 ~l~~~l~~~~~~Pv~-v~NDan~~~~~~~a~aaalp~~~r~~gfhgls~~~~aE~~~~g~~~~~~~~~~v~~~lGtG-iG 188 (381)
T 1saz_A 111 IIAHRFSSETGVPAY-VVDPVVVDEMEDVARVSGHPNYQRKSIFHALNQKTVAKEVARMMNKRYEEMNLVVAHMGGG-IS 188 (381)
T ss_dssp HHHHHHHHHHCCCEE-EESCTTBCCCCGGGTBCSSTTCBCCCCSCHHHHHHHHHHHHHHTTCCGGGCEEEEEEESSS-EE
T ss_pred HHHHHHHHhcCCCEE-EeCCCccccCcHHHHHcCCcchhhhcccccccHHHHHHHHHHhcCCCCccCCEEEEEeCCC-cE
Confidence 444555567788865 777765 5444 2232 4 8899999876 57
Q ss_pred EEEeeCceeccc
Q 017125 164 TVPIYEGYALPH 175 (377)
Q Consensus 164 v~~v~~g~~~~~ 175 (377)
...|.||+++..
T Consensus 189 ~g~i~~G~~~~G 200 (381)
T 1saz_A 189 IAAHRKGRVIDV 200 (381)
T ss_dssp EEEEETTEEEEE
T ss_pred EEEEECCEEEEe
Confidence 777889987743
No 68
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=36.01 E-value=22 Score=32.05 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=23.6
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhh
Q 017125 296 YGNIVLSGGSTMFPGIADRMSKEITAL 322 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~ 322 (377)
.++|+++||.+.=..+.++|.+.+...
T Consensus 250 ~~~vvlsGGVa~N~~L~~~L~~~l~~~ 276 (334)
T 3eno_A 250 KDEILMAGGVALNRRLRDMVTNMAREA 276 (334)
T ss_dssp CSEEEEESSGGGCHHHHHHHHHHHHHH
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHHc
Confidence 478999999999999999999888654
No 69
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=34.70 E-value=13 Score=32.68 Aligned_cols=46 Identities=24% Similarity=0.059 Sum_probs=29.9
Q ss_pred CceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 298 NIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 298 nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.|+|.||.+..+-|.+++++.+.+. .+... . ...++-.||+.++..
T Consensus 242 ~IvlgGgv~~~~~~~~~l~~~~~~~-----~i~~~--~-~~~~~~~GAa~la~~ 287 (299)
T 2e2o_A 242 KVYLKGGMFRSNIYHKFFTLYLEKE-----GIISD--L-GKRSPEIGAVILAYK 287 (299)
T ss_dssp EEEEESGGGGSHHHHHHHHHHHHHT-----TCEEE--C-CSCCHHHHHHHHHHH
T ss_pred EEEEECCccCcHHHHHHHHHHCCCC-----eEecc--C-CCCChHHHHHHHHHH
Confidence 5888888876666667777666654 23332 2 346678899887643
No 70
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=31.85 E-value=32 Score=32.44 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=36.5
Q ss_pred ceeccCCc-CCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 299 IVLSGGST-MFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 299 Ivl~GG~s-~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
|++-||.. .-|.|.+++++.+..++....+|.+... ..++.+||+++|..
T Consensus 396 V~i~Ggv~~~~~~~~~~l~~~l~~~~~~~~~i~~~l~---~dgs~iGAAllA~~ 446 (451)
T 1bdg_A 396 VGVDGSLYKFHPKFCERMTDMVDKLKPKNTRFCLRLS---EDGSGKGAAAIAAS 446 (451)
T ss_dssp EEEESHHHHHCTTHHHHHHHHHHHHSCTTCEEEEEEC---TTHHHHHHHHHHTT
T ss_pred EEEeCchhcCchhHHHHHHHHHHHHhCCCCcEEEEEC---CCccHHHHHHHHHH
Confidence 34445552 6789999999999988644456666643 56799999998876
No 71
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*
Probab=31.48 E-value=36 Score=32.15 Aligned_cols=22 Identities=14% Similarity=-0.071 Sum_probs=18.4
Q ss_pred ceEEEEeCCCCceEEEEeeCce
Q 017125 150 TTGIVLDSGDGVSHTVPIYEGY 171 (377)
Q Consensus 150 ~~~lVVDiG~~~t~v~~v~~g~ 171 (377)
.+..|+|+|+++|.|+-..+..
T Consensus 190 ~t~gvlDlGGgStqi~~~~~~~ 211 (456)
T 3cj1_A 190 GTLGAMDLGGASTQITFETTSP 211 (456)
T ss_dssp CCCEEEEECSSEEEEEEECCSC
T ss_pred CceEEEEcCCCceEEEeccCCc
Confidence 4679999999999999776654
No 72
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=31.04 E-value=91 Score=26.92 Aligned_cols=49 Identities=12% Similarity=-0.054 Sum_probs=33.8
Q ss_pred EEEEeCCCCceEEEEeeCceecccceEEe-cccHHHHHHHHHHHHHHcCC
Q 017125 152 GIVLDSGDGVSHTVPIYEGYALPHAILRL-DLAGRDLTDALMKILTERGY 200 (377)
Q Consensus 152 ~lVVDiG~~~t~v~~v~~g~~~~~~~~~~-~~GG~~i~~~l~~~l~~~~~ 200 (377)
-|+||+|.+.+.+..+-++..+....... ....+.+...+..++...+.
T Consensus 4 lL~IDIGNT~iK~gl~d~~~l~~~~r~~T~~~t~de~~~~l~~ll~~~~~ 53 (266)
T 3djc_A 4 ILCIDVGNSHIYGGVFDGDEIKLRFRHTSKVSTSDELGIFLKSVLRENNC 53 (266)
T ss_dssp EEEEEECSSEEEEEEEETTEEEEEEEEECSCCCHHHHHHHHHHHHHTTTC
T ss_pred EEEEEECCCeEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHcCC
Confidence 48999999999998888776663322211 24566777777777776554
No 73
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=30.57 E-value=13 Score=33.90 Aligned_cols=52 Identities=17% Similarity=0.166 Sum_probs=34.3
Q ss_pred HhhhcccCCCCeEEEechhhhhhhh----------------c--------------C----CceEEEEeCCCCceEEEEe
Q 017125 122 TQIMFETFNTPAMYVAIQAVLSLYA----------------S--------------G----RTTGIVLDSGDGVSHTVPI 167 (377)
Q Consensus 122 ~~~lfe~~~~~~v~~~~~~~~a~~~----------------~--------------g----~~~~lVVDiG~~~t~v~~v 167 (377)
.+.+-+.+++..|.+.++.-+++++ . | ..+.++|-+|.+ .-...|
T Consensus 120 ~~~l~~~~~~~pv~v~NDa~aaalge~~l~~~~~~~~~~~E~~~~~~~~~~~~~~~g~~~~~~~~~~v~~GTG-iG~gii 198 (373)
T 2q2r_A 120 SDYPKALFPPGHSAILNDLEAGGFGVLAVSDAHVFSEYFGVMWEGTQWRTCEQEPAGSVIGRGRCLVLAPGTG-LGSSLI 198 (373)
T ss_dssp GGSCTTTSCTTSEEEEEHHHHHHHHHHHHHHTTCHHHHEEEEECCTTTTTTCSSCTTSSCCSSCEEEEEESSS-EEEEEE
T ss_pred HHHHHHhcCCCCEEEEccHhHHhccccccChhhhccccchhhcccccccccccCCCcCcCCCCCEEEEEeCCc-eeEEEE
Confidence 3333334777568899999998888 2 3 257899999876 456667
Q ss_pred eCceecc
Q 017125 168 YEGYALP 174 (377)
Q Consensus 168 ~~g~~~~ 174 (377)
.+|++..
T Consensus 199 ~~g~l~~ 205 (373)
T 2q2r_A 199 YYNPPMN 205 (373)
T ss_dssp EECC---
T ss_pred ecCcccC
Confidence 7876654
No 74
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=30.40 E-value=26 Score=33.21 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=31.8
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|.++||.|+=+-+.+.+..-+ +.+|.+. +....++-+||+++|..
T Consensus 387 ~~~i~~~GG~a~s~~~~Qi~Adv~------g~pV~~~--~~~e~~~alGAA~lA~~ 434 (484)
T 2itm_A 387 PQSVTLIGGGARSEYWRQMLADIS------GQQLDYR--TGGDVGPALGAARLAQI 434 (484)
T ss_dssp CSCEEEESGGGCCHHHHHHHHHHH------CCCEEEE--SCTTSCHHHHHHHHHHH
T ss_pred cceEEEEeccccCHHHHHHHHHHh------CCeEEeC--CCCCcccHHHHHHHHHH
Confidence 367999999999876666655555 2244443 33334467899988765
No 75
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases, HSP70, actin superfamily, anhydro-N-actetylmuramic acid binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB: 3qbw_A*
Probab=30.37 E-value=15 Score=33.63 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=20.4
Q ss_pred cCceeccCCcCCcChHHHHHHHH
Q 017125 297 GNIVLSGGSTMFPGIADRMSKEI 319 (377)
Q Consensus 297 ~nIvl~GG~s~i~g~~~rl~~eL 319 (377)
+.|++|||++.=|-|.+||++.|
T Consensus 285 ~~v~vcGGGa~N~~Lm~~L~~~l 307 (371)
T 3qbx_A 285 EEVLVCGGGAFNTALMKRLAMLM 307 (371)
T ss_dssp CEEEEESGGGGCHHHHHHHHHHC
T ss_pred ceEEEECCccCcHHHHHHHHHhC
Confidence 57999999999999999988766
No 76
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=28.96 E-value=24 Score=31.66 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=27.6
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCC
Q 017125 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 335 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~ 335 (377)
.++|+++||.+.-..+.++|.+.+... .++++.++
T Consensus 245 ~~~vvlsGGVa~N~~l~~~l~~~l~~~-----g~~v~~p~ 279 (330)
T 2ivn_A 245 KDEVVLVGGVAANNRLREMLRIMTEDR-----GIKFFVPP 279 (330)
T ss_dssp CSEEEEESGGGGCHHHHHHHHHHHHHH-----TCEEECCC
T ss_pred CCeEEEEccHHHHHHHHHHHHHHHHHc-----CCEEEecC
Confidence 468999999999999999999888654 13565554
No 77
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=27.53 E-value=24 Score=36.71 Aligned_cols=51 Identities=14% Similarity=0.300 Sum_probs=39.7
Q ss_pred cCceeccCCcCC-cChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 297 GNIVLSGGSTMF-PGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 297 ~nIvl~GG~s~i-~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
..|++-||.++- |.|.+++++.+.++.+. .++++... +-+.-+||+++|..
T Consensus 408 ~~IvigGgV~~~~~~~~~~l~~~l~~~~~~-~~~~i~~a---~dgs~~GAA~laa~ 459 (917)
T 1cza_N 408 TTVGVDGSLYKTHPQYSRRFHKTLRRLVPD-SDVRFLLS---ESGSGKGAAMVTAV 459 (917)
T ss_dssp EEEEEECHHHHHCSSHHHHHHHHHHHHCTT-EEEEEEEC---TTCHHHHHHHHHHH
T ss_pred eEEEECCchhhccHHHHHHHHHHHHHhcCC-CceEEEEe---ccchHHHHHHHHHh
Confidence 357777777666 99999999999998754 46777665 45689999999876
No 78
>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}
Probab=27.12 E-value=17 Score=33.22 Aligned_cols=23 Identities=17% Similarity=0.518 Sum_probs=20.1
Q ss_pred cCceeccCCcCCcChHHHHHHHH
Q 017125 297 GNIVLSGGSTMFPGIADRMSKEI 319 (377)
Q Consensus 297 ~nIvl~GG~s~i~g~~~rl~~eL 319 (377)
..|++|||++.=|-|.+||++.|
T Consensus 291 ~~v~vcGGGa~N~~Lm~~L~~~l 313 (370)
T 3cqy_A 291 GELFVCGGGAFNAELMQRLAALL 313 (370)
T ss_dssp EEEEEESGGGGCHHHHHHHHHHC
T ss_pred CEEEEECCCcCCHHHHHHHHHhC
Confidence 36999999999999999988766
No 79
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=27.12 E-value=53 Score=31.18 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=32.4
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.+.|+++||.|+=+-+.+.+..-+ +.+|.+.... -++-+||+++|..
T Consensus 394 ~~~i~~~GG~a~s~~~~Qi~Adv~------g~pV~~~~~~---e~~alGaA~lA~~ 440 (497)
T 2zf5_O 394 IKELRVDGGATANDFLMQFQADIL------NRKVIRPVVK---ETTALGAAYLAGL 440 (497)
T ss_dssp CCCEEEESGGGGCHHHHHHHHHHH------TSCEEEESCS---CHHHHHHHHHHHH
T ss_pred cceEEEeCccccCHHHHHHHHhhc------CCeEEEcCCC---cchHHHHHHHHHH
Confidence 467999999999876666555555 2245554432 3678899998865
No 80
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=25.87 E-value=23 Score=35.89 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=22.1
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhh
Q 017125 296 YGNIVLSGGSTMFPGIADRMSKEITAL 322 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~ 322 (377)
.++|+|+||.+.=.-+.+++.+.|...
T Consensus 706 ~~~VvLSGGVa~N~~L~~~l~~~L~~~ 732 (772)
T 4g9i_A 706 VKNVALSGGVAYNELITKMIRKVVEAN 732 (772)
T ss_dssp CSCCCEESSTTCCHHHHHHHHHHGGGS
T ss_pred cCEEEEEchHHHHHHHHHHHHHHHHHC
Confidence 468999999999887888888777653
No 81
>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=24.66 E-value=26 Score=27.74 Aligned_cols=68 Identities=9% Similarity=0.021 Sum_probs=44.9
Q ss_pred CCCCeEEEechhhhhhhhcCCceEEEEeCCCCceEEEEeeCceec-ccceEEecccHHHHHHHHHHHHHHcC
Q 017125 129 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL-PHAILRLDLAGRDLTDALMKILTERG 199 (377)
Q Consensus 129 ~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~~v~~g~~~-~~~~~~~~~GG~~i~~~l~~~l~~~~ 199 (377)
+.+..+.+-++.+.++--....+-|.+|+---.|..+|+..|... .+......+ +++..+.++|+..+
T Consensus 22 ihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~G~~p~y~fts~Y~V---~~d~~fl~yL~~~~ 90 (156)
T 2yrb_A 22 IHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVRGLHPEYNFTSQYLV---HVNDLFLQYIQKNT 90 (156)
T ss_dssp EEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEESSSCCCCEEEEEEE---CCSHHHHHHHHHCC
T ss_pred EEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeecccccCCCCCcceEEEEEE---EeCHHHHHHHhcCC
Confidence 344455555555554444456788999999999999999998543 333444454 56667777776543
No 82
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}
Probab=23.77 E-value=55 Score=30.72 Aligned_cols=41 Identities=12% Similarity=0.307 Sum_probs=33.9
Q ss_pred CCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 307 MFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 307 ~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
..|+|.+++++.|+.+.|. .+|++.... -.+-.||+++|..
T Consensus 396 ~~P~f~~~l~~~l~~l~~~-~~v~~~~s~---DGSg~GAAl~AA~ 436 (445)
T 3hm8_A 396 LHPRFSSLVAATVRELAPR-CVVTFLQSE---DGSGKGAALVTAV 436 (445)
T ss_dssp HCTTHHHHHHHHHHHHCTT-EEEEEEECS---SCHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHhCCC-CcEEEEECC---CCchHHHHHHHHH
Confidence 4799999999999999885 467777665 4488999999876
No 83
>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*
Probab=23.62 E-value=38 Score=31.43 Aligned_cols=27 Identities=26% Similarity=0.176 Sum_probs=19.7
Q ss_pred CCCCCCCCCEEEeCCCCceEEeeeCCC
Q 017125 1 MADAEDIQPLVCDNGTGMVKAGFAGDD 27 (377)
Q Consensus 1 ~~~~~~~~~viiD~Gs~~~k~G~~~~~ 27 (377)
|++....+.+||..||+++|+++...+
T Consensus 12 ~~~~~~~~ILviN~GSSS~K~~lf~~~ 38 (415)
T 2e1z_A 12 MASNEFPVVLVINCGSSSIKFSVLDVA 38 (415)
T ss_dssp -----CCEEEEEEECSSEEEEEEEETT
T ss_pred cccCCCCeEEEEECCchhheEEEEECC
Confidence 677888899999999999999988643
No 84
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=22.46 E-value=74 Score=30.24 Aligned_cols=46 Identities=26% Similarity=0.208 Sum_probs=32.1
Q ss_pred cCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 297 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 297 ~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+.|+++||.|+=+-+.+.+..-+ +.+|.+.... -++-+||+++|..
T Consensus 409 ~~i~~~GG~a~s~~~~Q~~Adv~------g~pV~~~~~~---e~~alGaA~la~~ 454 (503)
T 2w40_A 409 HVLRCDGGMTKNKPFMQFNSDII------NTKIEVSKYK---EVTSLGAAVLAGL 454 (503)
T ss_dssp SCEEEESGGGGCHHHHHHHHHHH------TSCEEEESCS---CHHHHHHHHHHHH
T ss_pred ceEEEeCccccCHHHHHHHHHHH------CCeEEecCCC---cchHHHHHHHHHH
Confidence 67999999999886666665555 2355554433 3677899998765
No 85
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=22.46 E-value=48 Score=31.51 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=32.3
Q ss_pred cCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 297 GNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 297 ~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
+.|+++||.|+-+-+.+.+..-+ +.+|.+.... -++-+||+++|..
T Consensus 400 ~~i~~~GG~a~n~~~~q~~Adv~------g~pV~~~~~~---e~~alGaA~la~~ 445 (495)
T 2dpn_A 400 KVLKADGGMAQNRLFLKIQADLL------GVPVAVPEVT---ETTALGAALMAGV 445 (495)
T ss_dssp CCEEEESGGGGCHHHHHHHHHHH------TSCEEEESCS---CHHHHHHHHHHHH
T ss_pred cEEEEecccccCHHHHHHHHHHh------CCeeEecCCc---ccHHHHHHHHHHh
Confidence 56999999999887776666555 2355554433 3678899998865
No 86
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=21.55 E-value=52 Score=31.51 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=32.0
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEEECCCCCccccchhhhhhhcc
Q 017125 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
++.|+++||.|+=+-+.+.+..-+ +.+|.+.... -++-+||+++|..
T Consensus 426 ~~~i~~~GGgaks~~~~Qi~ADvl------g~pV~~~~~~---e~~alGAA~lA~~ 472 (520)
T 4e1j_A 426 DTVLRVDGGMVASDWTMQRLSDLL------DAPVDRPVIL---ETTALGVAWLAGS 472 (520)
T ss_dssp -CCEEEESGGGGCHHHHHHHHHHH------TSCEEEESCC---CHHHHHHHHHHHH
T ss_pred cceEEEeCccccCHHHHHHHHHHh------CCeEEecCCC---ccHHHHHHHHHHH
Confidence 578999999999876666555444 2255554433 3577899998875
No 87
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=21.26 E-value=37 Score=32.51 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=31.6
Q ss_pred hcCceeccCCcCCcChHHHHHHHHHhhCCCCceEEE-ECCCCCccccchhhhhhhcc
Q 017125 296 YGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKV-VAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 296 ~~nIvl~GG~s~i~g~~~rl~~eL~~~~~~~~~v~v-~~~~~~~~~~w~Gasi~a~l 351 (377)
++.|.++||.|+=+-+.+.+..-+ ...| ..+ +..-++-+||+++|..
T Consensus 403 ~~~i~~~GGga~s~~~~Qi~ADv~--------g~pV~~~~-~~~e~~alGaA~lA~~ 450 (511)
T 3hz6_A 403 VGLLKVVGGGARSEAWLRMIADNL--------NVSLLVKP-DAHLHPLRGLAALAAV 450 (511)
T ss_dssp CCEEEEESGGGGCHHHHHHHHHHH--------TCEEEECC-CGGGHHHHHHHHHHHH
T ss_pred CCEEEEeCchhcCHHHHHHHHHHH--------CCeeEEec-CCCCchHHHHHHHHHH
Confidence 678999999998875655554444 2244 332 2345678999999875
No 88
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=21.08 E-value=1.6e+02 Score=25.77 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=35.6
Q ss_pred CceeccCCcCC-cChHHHHHHHHHhhCC-C--CceEEEECCCCCccccchhhhhhhcc
Q 017125 298 NIVLSGGSTMF-PGIADRMSKEITALAP-S--SMKIKVVAPPERKYSVWIGGSILASL 351 (377)
Q Consensus 298 nIvl~GG~s~i-~g~~~rl~~eL~~~~~-~--~~~v~v~~~~~~~~~~w~Gasi~a~l 351 (377)
.|||.||.+.. +-|.+.+++.+.+... . ...++|....-.+.+.-.||+.++.-
T Consensus 255 ~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~~~~~~i~~s~l~~~a~l~GAa~l~~~ 312 (321)
T 3vgl_A 255 AFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGAADLARQ 312 (321)
T ss_dssp EEEEESGGGGGTHHHHHHHHHHHHHHCTTGGGSCCCEEEECTTGGGHHHHHHHHHHHT
T ss_pred EEEEeChhhcchHHHHHHHHHHHHHhcccccccCCCEEEECCCCCcHHHHHHHHHHHh
Confidence 47888888776 3357888888887664 1 12355655554567788898776543
No 89
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=20.85 E-value=80 Score=30.21 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=22.2
Q ss_pred CCCeEEEechhhhhhhhcCC--ceEEEEeCCCCce
Q 017125 130 NTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVS 162 (377)
Q Consensus 130 ~~~~v~~~~~~~~a~~~~g~--~~~lVVDiG~~~t 162 (377)
++|.+.-.-+..+++++.|. ..-+++-+|.+.+
T Consensus 257 g~pV~~g~~D~~aa~~g~g~~~~g~~~~s~GTs~~ 291 (520)
T 4e1j_A 257 AIPILGVAGDQQAATIGQACFKPGMLKSTYGTGCF 291 (520)
T ss_dssp CCBEEEECCHHHHHHHHTTCCSTTCEEEEESSSEE
T ss_pred CCeEEEECCcHHHHHHhCCCCCCCcEEEEecCchh
Confidence 56777777788888888874 3445566666543
Done!