BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017126
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 71/103 (68%)
Query: 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
G + L + NFD +++ D ILV+FYAPWCGHCK+LAP+ ++AA L+K PI +AKVD
Sbjct: 7 GVTLSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVD 66
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145
A + + LA + ++ +PTLKIF G P +Y GPR+ +V Y+
Sbjct: 67 ATEQTDLAKRFDVSGYPTLKIFRKGRPFDYNGPREKYGIVDYM 109
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 67/98 (68%)
Query: 48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS 107
L + NFD ++ D ILV+FYAPWCGHCK+LAP+ ++AA L+K PI +AKVDA +
Sbjct: 135 LTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAET 194
Query: 108 RLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145
LA + ++ +PTLKIF G P +Y GPR+ +V Y+
Sbjct: 195 DLAKRFDVSGYPTLKIFRKGRPYDYNGPREKYGIVDYM 232
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 77/121 (63%)
Query: 32 SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAK 91
SE++ + K + V+ L+++NFD+ ++ D +L++FYAPWCGHCK+ AP+ ++ A IL
Sbjct: 4 GSEDDLEVKEENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKD 63
Query: 92 LKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAP 151
PI +AK+DA S LAS+ ++ +PT+KI G +Y G R E +V +++ P
Sbjct: 64 KDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQP 123
Query: 152 D 152
D
Sbjct: 124 D 124
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/349 (26%), Positives = 152/349 (43%), Gaps = 41/349 (11%)
Query: 45 VIELDESNFDSAIS---SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
V+EL + NF+S IS S +LV+F+APWCGH KRLAP+ + AA +LK + +AKV
Sbjct: 3 VLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAA---TRLKGIVPLAKV 59
Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGIPTEYY-GPRKAELLVRYLKKFVAPDVSILNSDA 160
D + +K + +PTLKIF G Y GPR A+ +V +LKK P L ++
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPASVPLRTEE 119
Query: 161 EVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPA 220
E F+ + F E+ L + + A E + YD D
Sbjct: 120 EFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLVNEYD-DNGEG 178
Query: 221 LVALQPS------------YNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKD 268
++ +PS Y E + G +++FI++N + + +D +L++
Sbjct: 179 IILFRPSHLTNKFEDKTVAYTEQKMTSGK-----IKKFIQENIFGICPHMTEDNKDLIQG 233
Query: 269 DKRKIVLAIVEDETEEKS-----QKLVTTLKAAASANRELVFCYVGIKQFA-DFADTFEA 322
I V+ E K +++ K A +L F K F+ + +D
Sbjct: 234 KDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHELSDFGLE 293
Query: 323 NKKSKLPKMVVWDGNENYLTVIGSESIDEED---QGSQISRFLEGYREG 368
+ ++P + + T G + + +E+ G + RFL+ Y +G
Sbjct: 294 STAGEIPVVAIR-------TAKGEKFVMQEEFSRDGKALERFLQDYFDG 335
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 8/111 (7%)
Query: 42 DGKVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEP-IVIA 99
DG V + NFD +++ + +L++FYAPWCGHCK L P+ E L+ K+P IVIA
Sbjct: 351 DGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLS--KDPNIVIA 408
Query: 100 KVDADKYSRLASKQEIDAFPTLKIFMHGI---PTEYYGPRKAELLVRYLKK 147
K+DA + + S E+ FPT+ P +Y G R+ + YL++
Sbjct: 409 KMDATA-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQR 458
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 66/105 (62%)
Query: 48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS 107
L++ NFD+ ++ D +L++FYAPWCGHCK+ AP+ ++ A L PI +AK+DA S
Sbjct: 22 LNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS 81
Query: 108 RLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPD 152
LASK ++ +PT+KI G +Y G R E +V +++ PD
Sbjct: 82 MLASKFDVSGYPTIKILKKGQAVDYDGSRTQEEIVAKVREVSQPD 126
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 69/110 (62%), Gaps = 3/110 (2%)
Query: 45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
V+ L +SNF A+++ Y+LV+FYAPWCGHCK LAP+ +AA L I +AKVDA
Sbjct: 9 VLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDAT 68
Query: 105 KYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAELLVRYLKKFVAP 151
+ S LA + + +PT+K F +G P EY R+A+ +V +LKK P
Sbjct: 69 EESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGP 118
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 91.7 bits (226), Expect = 6e-19, Method: Composition-based stats.
Identities = 50/111 (45%), Positives = 68/111 (61%), Gaps = 7/111 (6%)
Query: 45 VIELDESNFDSAIS---SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
V+EL + NF+S IS S +LV+F+APWCGHCKRLAP+ + AA +LK + +AKV
Sbjct: 3 VLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAA---TRLKGIVPLAKV 59
Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGIPTEYY-GPRKAELLVRYLKKFVAP 151
D + +K + +PTLKIF G Y GPR A+ +V +LKK P
Sbjct: 60 DCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGP 110
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 81/142 (57%), Gaps = 8/142 (5%)
Query: 42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
D V++L +F+ I S D +L +F+APWCGHCK +AP+ +AA L +++ I +A++
Sbjct: 13 DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETL--VEKNITLAQI 70
Query: 102 DADKYSRLASKQEIDAFPTLKIFMH---GIPTEYYGPRKAELLVRYLKKFVAPDVSILNS 158
D + L + I FP+LKIF + +Y GPR AE +V+++ K P V+++
Sbjct: 71 DCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVV-- 128
Query: 159 DAEVSDFVENAGTFFPLFIGFG 180
A++ ++ N P+ + G
Sbjct: 129 -ADLPAYLANETFVTPVIVQSG 149
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 6/110 (5%)
Query: 42 DGKVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
D V +L N D ++ +LV +YAPWCGHCKRLAP E A A ++IAK
Sbjct: 357 DSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAK 416
Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHGIPTE---YYGPRKAELLVRYLKK 147
+D + I+ +PT+ ++ G +E Y G R + L ++K+
Sbjct: 417 LDHTEND--VRGVVIEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKE 464
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 60/101 (59%), Gaps = 6/101 (5%)
Query: 45 VIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
VIEL SNF+ + D + LV+FYAPWCGHC+RL P+ +AA LK+ + + V+A
Sbjct: 19 VIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAA---TALKDVVKVGAVNA 75
Query: 104 DKYSRLASKQEIDAFPTLKIFM--HGIPTEYYGPRKAELLV 142
DK+ L + + FPT+KIF P +Y G R E +V
Sbjct: 76 DKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIV 116
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 6/122 (4%)
Query: 43 GKVIELDESNFD-SAISSFDYILVDFYAPWCGHCKRLAPQLDEAAP-ILAKLKEPIVIAK 100
G VIEL + +FD + + S D +V+FYAPWCGHCK L P+ AA + + K + +A
Sbjct: 7 GDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAA 66
Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPR-KAELLVRYLKKFV--APDVSIL 156
VDA LAS+ I FPT+KIF G P +Y G R +++++ R L F AP +L
Sbjct: 67 VDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELL 126
Query: 157 NS 158
S
Sbjct: 127 ES 128
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 8/88 (9%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAK--LKEPIVIAKVDADKYSRLASKQEIDAFPT 120
+L++FYAPWCGHCK LAP+ +E + AK K+ +VIAKVDA EI FPT
Sbjct: 28 VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND---VPDEIQGFPT 84
Query: 121 LKIF---MHGIPTEYYGPRKAELLVRYL 145
+K++ G P Y G R E L++++
Sbjct: 85 IKLYPAGAKGQPVTYSGSRTVEDLIKFI 112
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 70.1 bits (170), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 59/108 (54%), Gaps = 10/108 (9%)
Query: 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAA----PILAKLKEPIVI 98
G V+ L E+NFD I+ + FYAPWCGHCK LAP +E + P LA +K I
Sbjct: 7 GTVLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK----I 61
Query: 99 AKVDADKYSRLASKQEIDAFPTLKIFMHGIP-TEYYGPRKAELLVRYL 145
A+VD + SK + +PTL +F G +E+ G R + L R++
Sbjct: 62 AEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 109
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 5/128 (3%)
Query: 41 IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL---KEPIV 97
+ ++ LD N D +++ D LV+FYA WC + L P +EA+ ++ + + +V
Sbjct: 3 LGSEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVV 62
Query: 98 IAKVDADKYSRLASKQEIDAFPTLKIFMHGIPT--EYYGPRKAELLVRYLKKFVAPDVSI 155
A+VD D++S +A + I +PTLK+F +G EY G R + L Y+++ + +
Sbjct: 63 FARVDCDQHSDIAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQE 122
Query: 156 LNSDAEVS 163
+ AE++
Sbjct: 123 IRDLAEIT 130
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105
I ++ FDS IS + ++VDF+A WCG CKR+AP +E + K+ V KVD D+
Sbjct: 12 IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKM----VFIKVDVDE 67
Query: 106 YSRLASKQEIDAFPTLKIFMHG 127
S + K+ I + PT K++ +G
Sbjct: 68 VSEVTEKENITSMPTFKVYKNG 89
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 68.6 bits (166), Expect = 5e-12, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAA----PILAKLKEPIVIAK 100
V+ L E+NFD I+ + FYAPWCGHCK LAP +E + P LA +K IA+
Sbjct: 7 VLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK----IAE 61
Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHGIP-TEYYGPRKAELLVRYL 145
VD + SK + +PTL +F G +E+ G R + L R++
Sbjct: 62 VDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 107
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 10/106 (9%)
Query: 45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAA----PILAKLKEPIVIAK 100
V+ L E+NFD I+ + FYAPWCGHCK LAP +E + P LA +K IA+
Sbjct: 2 VLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVK----IAE 56
Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHGIP-TEYYGPRKAELLVRYL 145
VD + SK + +PTL +F G +E+ G R + L R++
Sbjct: 57 VDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 102
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 42 DGKVIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
D + EL +FD AI + +Y LV+FYAPWCGHCK+L+ +AA L + + +
Sbjct: 16 DPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQ-VAAVN 74
Query: 101 VDADKYSRLASKQEIDAFPTLKIF 124
D +K L +K +++ FPTL +F
Sbjct: 75 CDLNKNKALCAKYDVNGFPTLMVF 98
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCGHCK +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVS 154
D+ A K I PTL +F +G E + L LK+F+ +++
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFLDANLA 108
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILA-KLKEPIVIAKVDA 103
V+E DE F ++ LVDF+APWCG C+ ++P L+E A A +LK + KV+
Sbjct: 35 VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGRLK----VVKVNV 90
Query: 104 DKYSRLASKQEIDAFPTLKIFMHGIPTEYY 133
D++ LA++ + + PTL +F G P +
Sbjct: 91 DEHPGLAARYGVRSVPTLVLFRRGAPVATW 120
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K IE+ + NFD + +LVDF+A WC C+ +AP L+E I + + +++AK+D
Sbjct: 2 AKPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEE---IAKEYEGKLLVAKLD 58
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTE 131
D+ + A + + + PT+ +F G P E
Sbjct: 59 VDENPKTAXRYRVXSIPTVILFKDGQPVE 87
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K IE+ + NFD + +LVDF+A WC C+ +AP L+E I + + +++AK+D
Sbjct: 1 AKPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEE---IAKEYEGKLLVAKLD 57
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTE 131
D+ + A + + + PT+ +F G P E
Sbjct: 58 VDENPKTAXRYRVXSIPTVILFKDGQPVE 86
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 42 DGKVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
DG V + NFD +++ + +L++FYAPWCGHCK L P+ E L+K IVIAK
Sbjct: 26 DGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPN-IVIAK 84
Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHGI---PTEYYGPRKAELLVRYLKK 147
+DA + + S E+ FPT+ P +Y G R+ + YL++
Sbjct: 85 MDATA-NDVPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQR 133
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 41 IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
I GKV +D + A +LVDF+APWCG C+++APQ AA A L + +AK
Sbjct: 45 ITGKVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAA---ATLAGQVRLAK 101
Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHGIP-TEYYGPRKAELLVRYLK 146
+D + +A + I P +F G G R A LV +++
Sbjct: 102 IDTQAHPAVAGRHRIQGIPAFILFHKGRELARAAGARPASELVGFVR 148
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L E +FD+ + D ILVDF+A WCG CK +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I PTL +F +G E + L LK+F+
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 62.4 bits (150), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 59/98 (60%), Gaps = 4/98 (4%)
Query: 54 DSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ 113
D ++S ++VDF+A WCG CK L P+L++ ++AK +V+AKVD D ++ LA +
Sbjct: 25 DRVVNSETPVVVDFHAQWCGPCKILGPRLEK---MVAKQHGKVVMAKVDIDDHTDLAIEY 81
Query: 114 EIDAFPTLKIFMHG-IPTEYYGPRKAELLVRYLKKFVA 150
E+ A PT+ +G + ++ G + + L +LKK +
Sbjct: 82 EVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKKLIG 119
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
D ++I L+ FD+A++S + V+FY+P C HC LAP E A + L + I V
Sbjct: 96 DPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL---LRIGAV 152
Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGIPT-EYYGPRKAELLVRYLKKFVAPDVSILNS 158
+ L + ++++P+L IF G+ +Y G R E LV + + V V+ L++
Sbjct: 153 NCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELST 210
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 7/112 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +AP LDE A + + + +AK++
Sbjct: 13 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLN 69
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVS 154
D+ A K I PTL +F +G E + L LK+F+ +++
Sbjct: 70 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFLDANLA 118
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +AP LDE I + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IAEEYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I PTL +F +G E + L LK+F+
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I + PTL +F +G E + L LK+F+
Sbjct: 60 IDQNPGTAPKYGIRSIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I PTL +F +G E + L LK+F+
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I PTL +F +G E + L LK+F+
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I PTL +F +G E + L LK+F+
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 9/106 (8%)
Query: 45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
++++ +++FDS + S LVDF+A WCG CK +AP L+E A A + I K+D D
Sbjct: 5 IVKVTDADFDSKVES-GVQLVDFWATWCGSCKMIAPVLEELA---ADYEGKADILKLDVD 60
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK--AELLVRYL 145
+ A+K E+ + PTL +F G P + + P++ AE+L ++L
Sbjct: 61 ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 106
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I PTL +F +G E + L LK+F+
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
D+ A K I PTL +F +G
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 9/106 (8%)
Query: 45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
++++ +++FDS + S LVDF+A WCG CK +AP L+E A A + I K+D D
Sbjct: 6 IVKVTDADFDSKVES-GVQLVDFWATWCGTCKMIAPVLEELA---ADYEGKADILKLDVD 61
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK--AELLVRYL 145
+ A+K E+ + PTL +F G P + + P++ AE+L ++L
Sbjct: 62 ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 107
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
D+ A K I PTL +F +G
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +AP LDE I + + + +AK++
Sbjct: 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDE---IADEYQGKLTVAKLN 60
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I PTL +F +G E + L LK+F+
Sbjct: 61 IDQNPGTAPKYGIRGTPTLLLFKNG---EVAATKVGALSKGQLKEFL 104
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +AP LDE A + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---DYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I PTL +F +G E + L LK+F+
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
D+ A K I PTL +F +G
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 60.5 bits (145), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHG 127
D+ A K I PTL +F +G
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 9/106 (8%)
Query: 45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
++++ +++FDS + S LVDF+A WCG CK +AP L+E A A + I K+D D
Sbjct: 6 IVKVTDADFDSKVES-GVQLVDFWATWCGPCKMIAPVLEELA---ADYEGKADILKLDVD 61
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK--AELLVRYL 145
+ A+K E+ + PTL +F G P + + P++ AE+L ++L
Sbjct: 62 ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 107
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA---KVDADKYS 107
S FDSAI+ ++VDFYA WCG CK +AP ++ K E A K+D D+
Sbjct: 9 SEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIE-------KFSEQYPQADFYKLDVDELG 61
Query: 108 RLASKQEIDAFPTLKIFMHG 127
+A K E+ A PTL +F +G
Sbjct: 62 DVAQKNEVSAMPTLLLFKNG 81
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA---KVDADKYS 107
S FDSAI+ ++VDFYA WCG CK +AP ++ K E A K+D D+
Sbjct: 15 SEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIE-------KFSEQYPQADFYKLDVDELG 67
Query: 108 RLASKQEIDAFPTLKIFMHG 127
+A K E+ A PTL +F +G
Sbjct: 68 DVAQKNEVSAMPTLLLFKNG 87
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I + + +FD+ + D ILVDF+A WCG CK +AP LDE A + + + +AK++
Sbjct: 3 KIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I PTL +F +G E + L LK+F+
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +AP LD+ A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I PTL +F +G E + L LK+F+
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG C+ +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I PTL +F +G E + L LK+F+
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 43 GKVIELDESNF-DSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
G V L NF D A + V+FYAPWCGHCK+LAP D+ K E IVIAK+
Sbjct: 7 GPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETY-KDHENIVIAKM 65
Query: 102 DADKYSRLASKQEIDAFPTLKIF 124
D+ A K + +FPTLK F
Sbjct: 66 DSTANEVEAVK--VHSFPTLKFF 86
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +F++ + D ILVDF+A WCG CK +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I PTL +F +G E + L LK+F+
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +AP L+E A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I PTL +F +G E + L LK+F+
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
+ V+FYAPWCGHCK+LAP D+ K E IVIAK+D+ A K + +FPTLK
Sbjct: 270 VFVEFYAPWCGHCKQLAPIWDKLGETY-KDHENIVIAKMDSTANEVEAVK--VHSFPTLK 326
Query: 123 IF 124
F
Sbjct: 327 FF 328
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 59.3 bits (142), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105
+ L ++NF AI +LVDF+A WCG C+ +AP L+E A A + + +AK++ D+
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA---DKVTVAKLNVDE 59
Query: 106 YSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK 137
S+ I + PTL +F G P + Y P++
Sbjct: 60 NPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKE 94
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 58.9 bits (141), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105
+ L ++NF AI +LVDF+A WCG C+ +AP L+E A A + + +AK++ D+
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA---DKVTVAKLNVDE 59
Query: 106 YSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK 137
S+ I + PTL +F G P + Y P++
Sbjct: 60 NPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKE 94
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 58.9 bits (141), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105
+ L ++NF AI +LVDF+A WCG C+ +AP L+E A A + + +AK++ D+
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA---DKVTVAKLNVDE 59
Query: 106 YSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK 137
S+ I + PTL +F G P + Y P++
Sbjct: 60 NPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKE 94
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 58.5 bits (140), Expect = 5e-09, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105
+ L ++NF AI +LVDF+A WCG C+ +AP L+E A A + + +AK++ D+
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA---DKVTVAKLNVDE 59
Query: 106 YSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK 137
S+ I + PTL +F G P + Y P++
Sbjct: 60 NPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKE 94
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 46 IELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
I++ +++F + +SS +LVDF+A WCG CK +AP L+E I + + +AK+D D
Sbjct: 10 IKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEE---IATERATDLTVAKLDVD 66
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFV 149
A ++ + PTL +F G P + G + L+R L V
Sbjct: 67 TNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 112
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +A LDE A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVS 154
D+ A K I PTL +F +G E + L LK+F+ +++
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFLDANLA 108
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WC CK +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVS 154
D+ A K I PTL +F +G E + L LK+F+ +++
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFLDANLA 108
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
+LVDF+A WCG C+++AP L+ I A+ + I I K++ D+ A+K + + PTL
Sbjct: 26 VLVDFWAAWCGPCRQIAPSLEA---IAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLN 82
Query: 123 IFMHG-IPTEYYGPRKAELLVRYLKKFVA 150
++ G + G + +VR L+ F+A
Sbjct: 83 VYQGGEVAKTIVGAKPKAAIVRDLEDFIA 111
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG K +AP LDE I + + + +AK++
Sbjct: 23 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDE---IADEYQGKLTVAKLN 79
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I PTL +F +G E + L LK+F+
Sbjct: 80 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 123
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGH-CKRLAPQLDEAAPILAKLKEPIVIAKV 101
K+I L + +FD+ + D ILVDF+A WCG CK +AP LDE A + + + +AK+
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIAD---EYQGKLTVAKL 59
Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
+ D+ A K I PTL +F +G E + L LK+F+
Sbjct: 60 NIDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 104
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG K +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I PTL +F +G E + L LK+F+
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WCG CK +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K PTL +F +G E + L LK+F+
Sbjct: 60 IDQNPGTAPKYIERGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 9/106 (8%)
Query: 45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
++++ +++FDS + S LVDF+A WCG K +AP L+E A A + I K+D D
Sbjct: 6 IVKVTDADFDSKVES-GVQLVDFWATWCGTSKMIAPVLEELA---ADYEGKADILKLDVD 61
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK--AELLVRYL 145
+ A+K E+ + PTL +F G P + + P++ AE+L ++L
Sbjct: 62 ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 107
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA---KVDADKYS 107
S FDSAI+ ++VDFYA WCG K +AP ++ K E A K+D D+
Sbjct: 15 SEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIE-------KFSEQYPQADFYKLDVDELG 67
Query: 108 RLASKQEIDAFPTLKIFMHG 127
+A K E+ A PTL +F +G
Sbjct: 68 DVAQKNEVSAMPTLLLFKNG 87
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 51 SNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL 109
S +DSA++S D ++VDF+A WCG CK +AP +++ A+ K+D D+ S +
Sbjct: 16 SEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEK----FAEQYSDAAFYKLDVDEVSDV 71
Query: 110 ASKQEIDAFPTLKIFMHG 127
A K E+ + PTL IF G
Sbjct: 72 AQKAEVSSMPTL-IFYKG 88
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 51 SNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL 109
S +DSA++S D ++VDF+A WCG CK +AP +++ A+ K+D D+ S +
Sbjct: 9 SEYDSALASGDKLVVVDFFATWCGPCKMIAPMIEK----FAEQYSDAAFYKLDVDEVSDV 64
Query: 110 ASKQEIDAFPTLKIFMHG 127
A K E+ + PTL IF G
Sbjct: 65 AQKAEVSSMPTL-IFYKG 81
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
+LVDF+APWCG C+ +AP +DE I + K+ + K++ D+ +AS+ I + PT+
Sbjct: 22 VLVDFWAPWCGPCRIIAPVVDE---IAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIM 78
Query: 123 IFMHGIPTE-YYGPRKAELLVRYLKKFV 149
+F G E G +V+ ++K++
Sbjct: 79 VFKGGKKCETIIGAVPKATIVQTVEKYL 106
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 55 SAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQE 114
SA +S +L DF+APWCG CK +AP L+E + ++ + + I K+D D+ A K
Sbjct: 12 SAETSEGVVLADFWAPWCGPCKMIAPVLEE---LDQEMGDKLKIVKIDVDENQETAGKYG 68
Query: 115 IDAFPTLKIFMHGIPTEY---YGPRKA--ELLVRYL 145
+ + PTL + G E + P++A EL+ ++L
Sbjct: 69 VMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
VI LD NFDS ++S + +VDF+A WC C LAP ++E LA+ + K+++D
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEE----LAEDYPQVGFGKLNSD 56
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTE 131
+ +A++ + + PT+ F G P +
Sbjct: 57 ENPDIAARYGVMSLPTVIFFKDGEPVD 83
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 49 DESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106
D+++ D ++ S +++DF+A WCG CK ++P+L E + A + +V+ KVD D+
Sbjct: 7 DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA---DNVVVLKVDVDEC 63
Query: 107 SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLK 146
+A + I + PT +G+ E + A+ L +K
Sbjct: 64 EDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIK 103
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 52/101 (51%), Gaps = 16/101 (15%)
Query: 42 DGKVIELDESNFDSAISSFDY------------ILVDFYAPWCGHCKRLAPQLDEAAPIL 89
+GKVI L ++ F + + +F+ +VDFYA WCG CK +AP LDE A
Sbjct: 8 NGKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELA--- 64
Query: 90 AKLKEPIVIAKVDADKYSRLASKQEIDAFPT-LKIFMHGIP 129
+ IVI KVD +K LA I + P+ L I M G P
Sbjct: 65 KEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKP 105
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
D ++I L+ FD+A++S + V+FY+P H LAP E A + L + I V
Sbjct: 115 DPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGL---LRIGAV 171
Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGI-PTEYYGPRKAELLVRYLKKFVAPDVSILNSDA 160
+ L + ++++P+L IF G+ +Y G R E LV + + V V+ L++
Sbjct: 172 NCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRSTVTELST-- 229
Query: 161 EVSDFVENAGTFFPLFIGF 179
+FV T F +G+
Sbjct: 230 --GNFVNAIETAFAAGVGW 246
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 38 KFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPIL-AKLKEPI 96
K ++ V L NF + S + LVDF+APW + L P+L +A+ +L +LK
Sbjct: 435 KESVNSHVTTLGPQNFPA--SDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLK--- 489
Query: 97 VIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSIL 156
+ +D + L + I A+PT +F EY G AE ++ +++ P V L
Sbjct: 490 -VGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHEYEGHHSAEQILEFIEDLRNPSVVSL 548
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Query: 62 YILVDFYAPWCGHCKRLAPQLDEAAPILAKL-KEPIVIAKVDADKYSRLASKQEIDAFPT 120
+ +VDFYAPW G + AP+ + +LA++ K + KVD Y + K I A+P+
Sbjct: 677 HWVVDFYAPWSGPSQNFAPEFE----LLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPS 732
Query: 121 LKIFMH 126
+K++ +
Sbjct: 733 VKLYQY 738
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 45 VIELDESNFDSAISSFDY---ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
V+ L S F+ + + +VDFY+PW + L P+ A L L I + V
Sbjct: 545 VVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL---INVGSV 601
Query: 102 DADKYSRLASKQEIDAFPTLKIF 124
D +Y +++ + +P ++ +
Sbjct: 602 DCGQYHSFCTQENVQRYPEIRFY 624
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 49 DESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106
D+++ D ++ S +++DF+A WCG CK ++P+L E + + + +V+ KVD D+
Sbjct: 12 DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVE---LSTQFADNVVVLKVDVDEC 68
Query: 107 SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLK 146
+A + I + PT +G+ E + A+ L +K
Sbjct: 69 EDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLEDVIK 108
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 9/106 (8%)
Query: 45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
++++ +++FDS + S LVDF+A CG CK +AP L+E A A + I K+D D
Sbjct: 5 IVKVTDADFDSKVES-GVQLVDFWATACGPCKMIAPVLEELA---ADYEGKADILKLDVD 60
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTEY---YGPRK--AELLVRYL 145
+ A+K E+ + PTL +F G P + + P++ AE+L ++L
Sbjct: 61 ENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKHL 106
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 55.1 bits (131), Expect = 7e-08, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 49 DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR 108
D S +SS +LVDF+A WCG CK +AP L+E A + + +AK+D D
Sbjct: 19 DASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIA---TERATDLTVAKLDVDTNPE 75
Query: 109 LASKQEIDAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFV 149
A ++ + PTL +F G P + G + L+R L V
Sbjct: 76 TARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 117
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
K+I L + +FD+ + D ILVDF+A WC K +AP LDE A + + + +AK++
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIAD---EYQGKLTVAKLN 59
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149
D+ A K I PTL +F +G E + L LK+F+
Sbjct: 60 IDQNPGTAPKYGIRGIPTLLLFKNG---EVAATKVGALSKGQLKEFL 103
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 46 IELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
I++ +++F + +SS +LVDF+A WCG K +AP L+E I + + +AK+D D
Sbjct: 12 IKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEE---IATERATDLTVAKLDVD 68
Query: 105 KYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFV 149
A ++ + PTL +F G P + G + L+R L V
Sbjct: 69 TNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVV 114
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF+APWCG CK +AP +DE A + I + K++ D+ +A++ I + PT+
Sbjct: 21 VMVDFWAPWCGPCKLIAPVIDELA---KEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVL 77
Query: 123 IFMHG 127
F +G
Sbjct: 78 FFKNG 82
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF+APWCG CK +AP +DE A + I + K++ D+ +A++ I + PT+
Sbjct: 20 VMVDFWAPWCGPCKLIAPVIDELA---KEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVL 76
Query: 123 IFMHG 127
F +G
Sbjct: 77 FFKNG 81
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
+++DFYA WCG CK +AP+L+E L++ +V KVD D+ +A +I PT
Sbjct: 23 VVIDFYATWCGPCKMIAPKLEE----LSQSMSDVVFLKVDVDECEDIAQDNQIACMPTFL 78
Query: 123 IFMHG 127
+G
Sbjct: 79 FMKNG 83
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKL-KEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
+VDFYAPWCG C+ AP+ + +LA++ K + KVD Y + K I A+P++K
Sbjct: 25 VVDFYAPWCGPCQNFAPEFE----LLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVK 80
Query: 123 IFMH 126
++ +
Sbjct: 81 LYQY 84
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 51 SNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL 109
S +DSA++S D ++VDF+A WCG K +AP +++ A+ K+D D+ S +
Sbjct: 17 SEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEK----FAEQYSDAAFYKLDVDEVSDV 72
Query: 110 ASKQEIDAFPTLKIFMHG 127
A K E+ + PTL IF G
Sbjct: 73 AQKAEVSSMPTL-IFYKG 89
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 6/78 (7%)
Query: 51 SNFDSAISSFD-YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL 109
S +DSA++S D ++VDF+A WCG K +AP +++ A+ K+D D+ S +
Sbjct: 9 SEYDSALASGDKLVVVDFFATWCGPSKMIAPMIEK----FAEQYSDAAFYKLDVDEVSDV 64
Query: 110 ASKQEIDAFPTLKIFMHG 127
A K E+ + PTL IF G
Sbjct: 65 AQKAEVSSMPTL-IFYKG 81
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 55 SAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQE 114
SA +S +L DF+APWCG K +AP L+E + ++ + + I K+D D+ A K
Sbjct: 12 SAETSEGVVLADFWAPWCGPSKMIAPVLEE---LDQEMGDKLKIVKIDVDENQETAGKYG 68
Query: 115 IDAFPTLKIFMHGIPTEY---YGPRKA--ELLVRYL 145
+ + PTL + G E + P++A EL+ ++L
Sbjct: 69 VMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKHL 104
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121
+L++FYAPWCGHCK+L P K+ +VIAK+DA + +++ FPT+
Sbjct: 28 VLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKD-LVIAKMDATANDITNDQYKVEGFPTI 85
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 55 SAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQE 114
SA +S +L DF+APWCG K +AP L+E + ++ + + I K+D D+ A K
Sbjct: 12 SAETSEGVVLADFWAPWCGPSKMIAPVLEE---LDQEMGDKLKIVKIDVDENQETAGKYG 68
Query: 115 IDAFPTLKIFMHG 127
+ + PTL + G
Sbjct: 69 VMSIPTLLVLKDG 81
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 45 VIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
VIE+ + NF+ + D +LVDF+APWCG C+ +AP ++E A + + + + KV+
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELA---KEYEGKVKVVKVNV 59
Query: 104 DKYSRLASKQEIDAFPTLKIFMHG 127
D+ A++ I + PTL +F +G
Sbjct: 60 DENPNTAAQYGIRSIPTLLLFKNG 83
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 18/99 (18%)
Query: 44 KVIELDESNFDSAISSFD-YILVDFYAPWC--------------GHCKRLAPQLDEAAPI 88
K+I L + +FD+ + D ILVDF+A WC G CK +AP LDE I
Sbjct: 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDE---I 60
Query: 89 LAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
+ + + +AK++ D+ A K I PTL +F +G
Sbjct: 61 ADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNG 99
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 15/99 (15%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
+LVDF+A WCG C+RL L P +A+ + + KVD DK A + + P L
Sbjct: 26 VLVDFFATWCGPCQRLGQIL----PSIAEANKDVTFIKVDVDKNGNAADAYGVSSIPAL- 80
Query: 123 IFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAE 161
+ +K ++ L +FV DVS + +D E
Sbjct: 81 ----------FFVKKEGNEIKTLDQFVGADVSRIKADIE 109
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123
+++FYAPWC C+ L P+ + A L+ + IAKVD + L+ + I+A PT+
Sbjct: 26 MIEFYAPWCPACQNLQPEWESFAEWGEDLE--VNIAKVDVTEQPGLSGRFIINALPTIYH 83
Query: 124 FMHGIPTEYYGPRKAELLVRYL 145
G Y GPR + + ++
Sbjct: 84 CKDGEFRRYQGPRTKKDFINFI 105
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF+APWCG K +AP +DE A + I + K++ D+ +A++ I + PT+
Sbjct: 21 VMVDFWAPWCGPSKLIAPVIDELA---KEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVL 77
Query: 123 IFMHG 127
F +G
Sbjct: 78 FFKNG 82
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
I+VDF+A WCG C+ +AP+++ LAK + AKVD D+ A+K + A PT
Sbjct: 22 IVVDFFAQWCGPCRNIAPKVE----ALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFV 77
Query: 123 IFMHG 127
G
Sbjct: 78 FIKDG 82
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 38 KFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIV 97
K K+ V L+ NFD I+ ++VDF+A WC C LAP ++E LA +
Sbjct: 1 KEKVKEPVKHLNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEE----LANDYPQVA 56
Query: 98 IAKVDADKYSRLASKQEIDAFPTLKIFMHG 127
K++ ++ +A + I + PT+ F +G
Sbjct: 57 FGKLNTEESQDIAMRYGIMSLPTIMFFKNG 86
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK- 122
+VDFYA WCG CK +AP L+E + A I I KV+ DK LA I + PT+
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYAG---KIYIYKVNVDKEPELARDFGIQSIPTIWF 111
Query: 123 IFMHGIPTEYYGPRKAELLVRYLKKFV 149
+ M G P G E L Y+ K +
Sbjct: 112 VPMKGEPQVNMGALSKEQLKGYIDKVL 138
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK- 122
+VDFYA WCG CK +AP L+E + A I I KV+ DK LA I PT+
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYAG---KIYIYKVNVDKEPELARDFGIQGIPTIWF 111
Query: 123 IFMHGIPTEYYGPRKAELLVRYLKKFV 149
+ M G P G E L Y+ K +
Sbjct: 112 VPMKGEPQVNMGALSKEQLKGYIDKVL 138
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
DG+VI D + ++DF+APWCG C+ AP E A A+ + KV
Sbjct: 37 DGEVINATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETA---AERAGKVRFVKV 93
Query: 102 DADKYSRLASKQEIDAFPTLKIFMHG 127
+ + L+++ I + PT+ ++ +G
Sbjct: 94 NTEAEPALSTRFRIRSIPTIXLYRNG 119
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF+A WCG CK +AP E + K + KVD DK A K I A PT
Sbjct: 36 VVVDFFATWCGPCKTIAPLFKELSE-----KYDAIFVKVDVDKLEETARKYNISAMPTFI 90
Query: 123 IFMHG 127
+G
Sbjct: 91 AIKNG 95
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS 107
L E NFD I + +LVD +A WC C P + A K K V +++ D+
Sbjct: 9 LTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAE---KYKGKAVFGRLNVDENQ 65
Query: 108 RLASKQEIDAFPTLKIFMHG 127
++A K + PT IF++G
Sbjct: 66 KIADKYSVLNIPTTLIFVNG 85
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF+A WCG CK +AP E + K + KVD DK A K I A PT
Sbjct: 27 VVVDFFATWCGPCKTIAPLFKELSE-----KYDAIFVKVDVDKLEETARKYNISAMPTFI 81
Query: 123 IFMHG 127
+G
Sbjct: 82 AIKNG 86
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 46 IELDESNFDS-AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104
+ + +S+FD + + +LVDF+A WCG CK + P L E I + + +AKV+ D
Sbjct: 5 LAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGE---IGKEFAGKVTVAKVNID 61
Query: 105 KYSRLASKQEIDAFPTLKIFMHG 127
+ ++ + PTL + G
Sbjct: 62 DNPETPNAYQVRSIPTLMLVRDG 84
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 41 IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK 100
I +E A S ++VDF A WCG C+ +AP + LAK ++ K
Sbjct: 19 IACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFAD----LAKKLPNVLFLK 74
Query: 101 VDADKYSRLASKQEIDAFPTLKIFMHG-IPTEYYGPRKAEL 140
VD D+ +AS I A PT G I + G +K EL
Sbjct: 75 VDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDEL 115
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA 110
+ F + I D +++DFYA WCG CK + P L + L + + K D D+ +A
Sbjct: 21 TEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTK----LIQAYPDVRFVKCDVDESPDIA 76
Query: 111 SKQEIDAFPTL 121
+ E+ A PT
Sbjct: 77 KECEVTAMPTF 87
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF A WCG CK + P L++ ++ +VD D +AS+ E+ + PT +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASESEVKSMPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
F G E+ G K +L
Sbjct: 79 FFKKGQKVGEFSGANKEKL 97
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF A WCG CK + P L++ ++ +VD D +AS+ E+ A PT +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
F G E+ G K +L
Sbjct: 79 FFKKGQKVGEFSGANKEKL 97
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
+++DF+A WCG CK + P ++ + A K + KVD D+ S++A + I A PT
Sbjct: 36 VVIDFWATWCGPCKMIGPVFEKISDTPAGDK--VGFYKVDVDEQSQIAQEVGIRAMPTFV 93
Query: 123 IFMHG 127
F +G
Sbjct: 94 FFKNG 98
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 45 VIELDESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102
++ ++ESN + S +L F++ HC +L P L+ A A+ ++AK+D
Sbjct: 9 IVNINESNLQQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLA---AQYHGQFILAKLD 65
Query: 103 ADKYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFV 149
D +A++ + A PT+ +F +G P + + GP+ E + L K +
Sbjct: 66 CDAEQXIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLDKVL 113
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Query: 44 KVIELDESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV 101
++ ++ESN + S +L F++ HC +L P L+ A A+ ++AK+
Sbjct: 8 NIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLA---AQYNGQFILAKL 64
Query: 102 DADKYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPRKAELLVRYLKKFVAP 151
D D +A++ + A PT+ +F +G P + + GP+ E +R L V P
Sbjct: 65 DCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEE-AIRALLDXVLP 114
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF A WCG CK + P L++ ++ +VD D +AS+ E+ PT +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASEXEVKCMPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
F G E+ G K +L
Sbjct: 79 FFKKGQKVGEFSGANKEKL 97
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF A WCG CK + P L++ ++ +VD D +AS+ E+ + PT +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
F G E+ G K +L
Sbjct: 79 FFKKGQKVGEFSGANKEKL 97
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF A WCG CK + P L++ ++ +VD D +AS+ E+ PT +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
F G E+ G K +L
Sbjct: 79 FFKKGQKVGEFSGANKEKL 97
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF A WCG CK + P L++ ++ +VD D +AS+ E+ PT +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKCTPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
F G E+ G K +L
Sbjct: 79 FFKKGQKVGEFSGANKEKL 97
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF A WCG CK + P L++ ++ +VD + +AS+ E+ PT +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVNDCQDVASECEVKCMPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
F G E+ G K +L
Sbjct: 79 FFKKGQKVGEFSGANKEKL 97
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
+++DF A WCG C+ +AP E AK V KVD D+ +A K ++A PT
Sbjct: 39 VIIDFTASWCGPCRFIAPVFAE----YAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFL 94
Query: 123 IFMHGIPTE-YYGPRKAEL 140
G + G RK +L
Sbjct: 95 FIKDGAEADKVVGARKDDL 113
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 52 NFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS 111
+F+ S I+VDF A WC CK +AP E LAK + KVD D+ +A
Sbjct: 18 HFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAE----LAKKFPNVTFLKVDVDELKAVAE 73
Query: 112 KQEIDAFPTLKIFM 125
+ ++A PT IF+
Sbjct: 74 EWNVEAMPTF-IFL 86
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 48 LDESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106
L +S+F + D I++ F WC CK++ P +E A ++++ I A +DA+
Sbjct: 4 LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMA---SQMEGDIRFAYMDAEDA 60
Query: 107 SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRY 144
+ ++ I P+L +F+ G+ E + + +RY
Sbjct: 61 EKTMAELNIRTLPSLALFVDGMIREVFSGTMNKSDLRY 98
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF A WCG K + P L++ ++ +VD D +AS+ E+ + PT +
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHS----LSEKYSNVIFLEVDVDDSQDVASESEVKSMPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
F G E+ G K +L
Sbjct: 79 FFKKGQKVGEFSGANKEKL 97
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF A WCG K + P L++ ++ +VD D +AS+ E+ A PT +
Sbjct: 23 VVVDFSATWCGPAKMIKPFFHS----LSEKYSNVIFLEVDVDDAQDVASEAEVKATPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
F G E+ G K +L
Sbjct: 79 FFKKGQKVGEFSGANKEKL 97
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105
++++E+N ++ +++DF A WCG C+ +AP + LAK V KVD D+
Sbjct: 25 MQIEEAN-----TAKKLVVIDFTASWCGPCRIMAPVFAD----LAKKFPNAVFLKVDVDE 75
Query: 106 YSRLASKQEIDAFPTLKIFMHG-IPTEYYGPRKAELLVR 143
+A + ++A PT G + G K EL +
Sbjct: 76 LKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAK 114
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF A WCG CK + P L++ ++ +VD D +A K I PTL
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDAQDVAPKYGIRGIPTLL 78
Query: 123 IFMHG 127
+F +G
Sbjct: 79 LFKNG 83
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 43 GKVIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPI--VIA 99
+V+EL + FDS + + + V +Y PW H D+ + ++ + + V A
Sbjct: 15 SRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAA 74
Query: 100 KVDADKYSRLASKQEIDAFPTLKIFMH---GIPTEYYGPRKAELL 141
++D +KY + + + FPT++ + P EY G R L+
Sbjct: 75 RIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLV 119
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF A WCG K + P L++ ++ +VD D +AS+ E+ + PT +
Sbjct: 34 VVVDFSATWCGPSKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQ 89
Query: 123 IFMHGIPT-EYYGPRKAEL 140
F G E+ G K +L
Sbjct: 90 FFKKGQKVGEFSGANKEKL 108
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
+++DF A WCG C+ +AP E AK + KVD D+ +A ++A PT
Sbjct: 31 VIIDFTASWCGPCRVIAPVFAE----YAKKFPGAIFLKVDVDELKDVAEAYNVEAMPTFL 86
Query: 123 IFMHG 127
G
Sbjct: 87 FIKDG 91
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF A WCG K + P L++ ++ +VD D +AS+ E+ PT +
Sbjct: 23 VVVDFSATWCGPSKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKRMPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
F G E+ G K +L
Sbjct: 79 FFKKGQKVGEFSGANKEKL 97
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 45 VIELDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103
+IE ++ + + S ++V FY+P C +CK P +E A + V +++
Sbjct: 8 IIEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYA---KEYGSSAVFGRINI 64
Query: 104 DKYSRLASKQEIDAFPTLKIFMHGIP 129
A K + PT K F HG P
Sbjct: 65 ATNPWTAEKYGVQGTPTFKFFCHGRP 90
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 41 IDGKVIELDESNFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVI 98
I GKV E+++ F + + +++D + WCG CK +AP+ ++ LA+ ++
Sbjct: 4 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEK----LAEEYLDVIF 59
Query: 99 AKVDADKYSR-LASKQEIDAFPTLKIFM-HGIPTEYYGPRKAELL 141
K+D ++ ++ LA + I PT KI + + E G + +LL
Sbjct: 60 LKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLL 104
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 41 IDGKVIELDESNFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVI 98
I GKV E+++ F + + +++D + WCG CK +AP+ ++ LA+ ++
Sbjct: 16 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEK----LAEEYLDVIF 71
Query: 99 AKVDADKYSR-LASKQEIDAFPTLKIFM-HGIPTEYYGPRKAELL 141
K+D ++ ++ LA + I PT KI + + E G + +LL
Sbjct: 72 LKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLL 116
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQE--IDAFPTLK 122
V+F+A WCGHC AP A + + + +A +D + + A ++ I FPT++
Sbjct: 35 VEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVR 94
Query: 123 IF 124
F
Sbjct: 95 FF 96
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 6/81 (7%)
Query: 45 VIELDESNFDSAISSFDY-ILVDFYAPWCGHCKRLAPQLDEAAPILA-KLKEPIVIAKVD 102
VI + ++ F+S + + +LV F+A WCG C+ ++P ++ AA + +LK + K++
Sbjct: 9 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLK----VVKLE 64
Query: 103 ADKYSRLASKQEIDAFPTLKI 123
D K +++ P L++
Sbjct: 65 IDPNPTTVKKYKVEGVPALRL 85
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105
++++E+N ++ +++DF A WCG + +AP + LAK V KVD D+
Sbjct: 28 MQIEEAN-----TAKKLVVIDFTASWCGPSRIMAPVFAD----LAKKFPNAVFLKVDVDE 78
Query: 106 YSRLASKQEIDAFPTLKIFMHG-IPTEYYGPRKAELLVR 143
+A + ++A PT G + G K EL +
Sbjct: 79 LKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTAK 117
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 47 ELDESNFDSAISSFDYILVDFYAPWCGHCKRLAP---QLDEAAPILAKLKEPIVIAKVDA 103
+L E++ D I +L +F A WCG CK++AP +L E P L L +D
Sbjct: 38 KLSEASRDGKI-----VLANFSARWCGPCKQIAPYYIELSENYPSLMFL-------VIDV 85
Query: 104 DKYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPRKAEL 140
D+ S ++ EI A PT G + G K EL
Sbjct: 86 DELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPEL 123
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF A WCG CK + P L++ ++ +VD D +AS+ E+ PT +
Sbjct: 23 VVVDFSATWCGPCKMIKPFFHS----LSEKYSNVIFLEVDVDDXQDVASEXEVKCMPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
F G E+ G K +L
Sbjct: 79 FFKKGQKVGEFSGANKEKL 97
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++VDF A W G K + P L++ ++ +VD D +AS+ E+ PT +
Sbjct: 23 VVVDFSATWSGPSKMIKPFFHS----LSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQ 78
Query: 123 IFMHGIPT-EYYGPRKAEL 140
F G E+ G K +L
Sbjct: 79 FFKKGQKVGEFSGANKEKL 97
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 37.0 bits (84), Expect = 0.016, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 67 FYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH 126
F A WCG CK + +++ A +K AKVDAD S + SK + PT I
Sbjct: 44 FTAVWCGPCKTIERPMEKIAYEFPTVK----FAKVDADNNSEIVSKCRVLQLPTFIIARS 99
Query: 127 G 127
G
Sbjct: 100 G 100
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121
I++ F+A WC C + ++D+ K I + KVD DK LA K + + PT+
Sbjct: 45 IVLYFFAKWCQACTMQSTEMDKLQKYYGK---RIYLLKVDLDKNESLARKFSVKSLPTI 100
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQE--IDAFPTLK 122
V+F+A WCGH AP E A + + + +A +D + + A +E I FPT++
Sbjct: 35 VEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVR 94
Query: 123 IF 124
F
Sbjct: 95 FF 96
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 41 IDGKVIELDESNFDSAISSFD--YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVI 98
I GKV E+++ F + + +++D + WCG K +AP+ ++ LA+ ++
Sbjct: 3 IVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEK----LAEEYLDVIF 58
Query: 99 AKVDADKYSR-LASKQEIDAFPTLKIFM-HGIPTEYYGPRKAELL 141
K+D ++ ++ LA + I PT KI + + E G + +LL
Sbjct: 59 LKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLL 103
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++V F+APW C Q++E LAK + K++A+ ++ K EI + PT
Sbjct: 41 LVVHFWAPWAPQCA----QMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFL 96
Query: 123 IF 124
F
Sbjct: 97 FF 98
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
++V F+APW C Q++E LAK + K++A+ ++ K EI + PT
Sbjct: 35 LVVHFWAPWAPQCA----QMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFL 90
Query: 123 IF 124
F
Sbjct: 91 FF 92
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 35.4 bits (80), Expect = 0.058, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
I+VDF A WCG CK +AP + + A ++ KVD D + +A I A PT
Sbjct: 27 IVVDFTATWCGPCKMIAPLFETLSNDYAG---KVIFLKVDVDAVAAVAEAAGITAMPTFH 83
Query: 123 IFMHGIPTE 131
++ G+ +
Sbjct: 84 VYKDGVKAD 92
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS--RLASKQEIDAFPT 120
+ VD + WCG CKRL+ + + + + V K+D +K L K + A+PT
Sbjct: 30 LFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPT 89
Query: 121 L 121
L
Sbjct: 90 L 90
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 47 ELDESNFDSAISSFDYILVDFYAPWCGHCKRLAP---QLDEAAPILAKLKEPIVIAKVDA 103
+L E++ D I +L +F A WCG +++AP +L E P L L +D
Sbjct: 38 KLSEASRDGKI-----VLANFSARWCGPSRQIAPYYIELSENYPSLMFL-------VIDV 85
Query: 104 DKYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPRKAEL 140
D+ S ++ EI A PT G + G K EL
Sbjct: 86 DELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPEL 123
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 32.3 bits (72), Expect = 0.44, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122
I+V F A WCG CK +AP + + A ++ KVD D + +A I A PT
Sbjct: 27 IVVAFTATWCGPCKMIAPLFETLSNDYAG---KVIFLKVDVDAVAAVAEAAGITAMPTFH 83
Query: 123 IFMHGIPTE 131
++ G+ +
Sbjct: 84 VYKDGVKAD 92
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 41 IDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDE 84
I+GK + L A YI +D +A WCG C+ P L E
Sbjct: 18 INGKTVSL-------ADLKGKYIYIDVWATWCGPCRGELPALKE 54
>pdb|3HE7|D Chain D, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta7 Nkt Tcr
Length = 242
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 127 GIPTEYYGPRKAELLVRYLKKFVAPDVSILN-SDAEVSDFVENAGTFFPLFIGFGLDESV 185
G+ T+Y+GP L++ LK P+V++ S+AE+S T L GF D
Sbjct: 97 GLDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISH--TQKATLVCLATGFYPDHVE 154
Query: 186 MS 187
+S
Sbjct: 155 LS 156
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 28/77 (36%)
Query: 40 KIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA 99
++ L + FD A ++ F+ PWC C AP L + A + +
Sbjct: 4 RLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIAT 63
Query: 100 KVDADKYSRLASKQEID 116
+ D SK ++
Sbjct: 64 RADVGAMQSFVSKYNLN 80
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDE 84
+LV+ +A WC C++ P LDE
Sbjct: 63 LLVNLWATWCVPCRKEMPALDE 84
>pdb|2RGV|A Chain A, The Crystal Structure Of Perr-Ox Highlights
2-Oxo-Histidine Formation
pdb|2RGV|B Chain B, The Crystal Structure Of Perr-Ox Highlights
2-Oxo-Histidine Formation
Length = 145
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 39 FKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLA----PQLDEAAPILAKL 92
F+ G V EL + A S FD++ D Y C +C ++ P LDE + A +
Sbjct: 66 FRESGLVKEL---TYGDASSRFDFVTSDXYXAICENCGKIVDFHYPGLDEVEQLAAHV 120
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 29.3 bits (64), Expect = 3.7, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123
+V F CG C R+AP ++ V +VD + A+ I A PT +
Sbjct: 25 VVKFTMRGCGPCLRIAPAFSS----MSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQF 80
Query: 124 FMHGIPTEYY 133
F + + + Y
Sbjct: 81 FRNKVRIDQY 90
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDE 84
+LV+F+A WC +C+ P D
Sbjct: 44 VLVNFWASWCPYCRDEXPSXDR 65
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPI 88
L++ ++A S ++V + WCG CK L P+ E+ I
Sbjct: 28 LEDGKKEAAASGLP-LMVIIHKSWCGACKALKPKFAESTEI 67
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPI 88
L++ ++A S ++V + WCG CK L P+ E+ I
Sbjct: 35 LEDGKKEAAASGLP-LMVIIHKSWCGACKALKPKFAESTEI 74
>pdb|1SP8|A Chain A, 4-hydroxyphenylpyruvate Dioxygenase
pdb|1SP8|B Chain B, 4-hydroxyphenylpyruvate Dioxygenase
pdb|1SP8|C Chain C, 4-hydroxyphenylpyruvate Dioxygenase
pdb|1SP8|D Chain D, 4-hydroxyphenylpyruvate Dioxygenase
Length = 418
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 307 YVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGY 365
+ G +FA+F +S L MV+ + +EN L + +E + + SQI FL+ +
Sbjct: 220 FTGFHEFAEFTTEDVGTAESGLNSMVLANNSENVLLPL-NEPVHGTKRRSQIQTFLDHH 277
>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase
(Adh4) In Complex With Nad And Zn
pdb|3COS|B Chain B, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase
(Adh4) In Complex With Nad And Zn
pdb|3COS|C Chain C, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase
(Adh4) In Complex With Nad And Zn
pdb|3COS|D Chain D, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase
(Adh4) In Complex With Nad And Zn
Length = 381
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQE 114
++ YAP C CK L ++ LK P ++ DK SR K +
Sbjct: 92 VIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFTCKGK 142
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 63 ILVDFYAPWCGHCKRLAPQLDE 84
+ +DF+A WCG C++ P ++
Sbjct: 31 VYLDFWASWCGPCRQSFPWXNQ 52
>pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium
pdb|4GNI|B Chain B, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium
Length = 409
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 98 IAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILN 157
IA DK +A++ PT+ ++ G EYYG + LVR K VA IL
Sbjct: 27 IAHTVDDKAEVIANEDGDRQIPTILSYVDG--DEYYGQQAKNFLVRNPKNTVAYFRDILG 84
Query: 158 SDAEVSDFVENAGTFFPLFIG 178
D + D N + P G
Sbjct: 85 QDFKSVDPTHNHASAHPQEAG 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,406,061
Number of Sequences: 62578
Number of extensions: 429825
Number of successful extensions: 1404
Number of sequences better than 100.0: 171
Number of HSP's better than 100.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1138
Number of HSP's gapped (non-prelim): 179
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)