Query 017126
Match_columns 377
No_of_seqs 163 out of 2869
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 05:50:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 4.4E-45 9.6E-50 330.6 26.6 326 40-376 22-356 (493)
2 PTZ00102 disulphide isomerase; 100.0 7.7E-40 1.7E-44 312.7 34.7 311 42-376 31-348 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 2.1E-39 4.5E-44 309.1 34.0 321 43-376 1-337 (462)
4 KOG0912 Thiol-disulfide isomer 100.0 2.1E-37 4.5E-42 257.1 22.2 313 48-372 1-325 (375)
5 KOG4277 Uncharacterized conser 100.0 1.1E-36 2.3E-41 252.5 19.5 312 43-372 28-361 (468)
6 PF01216 Calsequestrin: Calseq 100.0 3.1E-34 6.7E-39 243.4 33.0 351 9-372 3-374 (383)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 7.6E-24 1.7E-28 158.8 12.7 103 40-145 6-113 (113)
8 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 5.6E-23 1.2E-27 153.2 11.8 99 44-145 2-101 (101)
9 cd02996 PDI_a_ERp44 PDIa famil 99.9 2.6E-22 5.7E-27 151.5 12.9 103 43-145 1-108 (108)
10 PF00085 Thioredoxin: Thioredo 99.9 1.1E-21 2.4E-26 147.1 14.3 101 45-148 1-103 (103)
11 cd03065 PDI_b_Calsequestrin_N 99.9 1.6E-21 3.4E-26 147.0 12.7 110 39-149 5-119 (120)
12 cd03007 PDI_a_ERp29_N PDIa fam 99.9 8.4E-22 1.8E-26 146.4 10.5 98 44-148 2-115 (116)
13 PF13848 Thioredoxin_6: Thiore 99.9 9.1E-21 2E-25 157.8 18.1 172 184-364 10-184 (184)
14 PTZ00443 Thioredoxin domain-co 99.9 4E-21 8.8E-26 161.0 15.8 106 42-150 29-140 (224)
15 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 1.4E-21 3.1E-26 146.5 11.8 99 44-145 2-104 (104)
16 cd02994 PDI_a_TMX PDIa family, 99.9 2.7E-21 5.9E-26 144.2 12.9 101 43-147 1-101 (101)
17 KOG0191 Thioredoxin/protein di 99.9 3E-20 6.6E-25 171.5 17.7 206 43-253 29-254 (383)
18 cd03005 PDI_a_ERp46 PDIa famil 99.8 2E-20 4.3E-25 140.0 12.5 101 44-145 1-102 (102)
19 KOG0910 Thioredoxin-like prote 99.8 1.2E-20 2.6E-25 143.5 11.3 105 43-150 43-149 (150)
20 cd03002 PDI_a_MPD1_like PDI fa 99.8 3.7E-20 8E-25 140.2 11.9 100 44-146 1-109 (109)
21 COG3118 Thioredoxin domain-con 99.8 2.5E-20 5.5E-25 157.1 11.9 107 42-151 22-132 (304)
22 cd03001 PDI_a_P5 PDIa family, 99.8 1.4E-19 3E-24 135.6 12.5 99 44-145 1-102 (103)
23 cd02963 TRX_DnaJ TRX domain, D 99.8 1.4E-19 3E-24 136.8 12.6 100 46-147 7-110 (111)
24 cd02962 TMX2 TMX2 family; comp 99.8 3.7E-19 8E-24 140.2 14.2 94 39-134 24-126 (152)
25 TIGR01126 pdi_dom protein disu 99.8 1.9E-19 4.1E-24 134.6 11.9 100 48-148 1-101 (102)
26 cd02997 PDI_a_PDIR PDIa family 99.8 3.2E-19 6.9E-24 133.9 12.5 101 44-145 1-104 (104)
27 KOG1731 FAD-dependent sulfhydr 99.8 1.3E-19 2.9E-24 164.4 12.3 229 30-259 26-284 (606)
28 cd02993 PDI_a_APS_reductase PD 99.8 4.1E-19 9E-24 134.0 12.0 100 44-145 2-109 (109)
29 PHA02278 thioredoxin-like prot 99.8 5.5E-19 1.2E-23 130.3 12.3 93 49-144 3-100 (103)
30 PRK10996 thioredoxin 2; Provis 99.8 9.6E-19 2.1E-23 137.5 14.3 105 42-149 34-139 (139)
31 PRK09381 trxA thioredoxin; Pro 99.8 1.1E-18 2.3E-23 132.0 14.0 105 42-149 2-108 (109)
32 cd02999 PDI_a_ERp44_like PDIa 99.8 3.2E-19 7E-24 131.8 10.8 84 58-145 16-100 (100)
33 cd03000 PDI_a_TMX3 PDIa family 99.8 6.1E-19 1.3E-23 132.0 12.1 97 51-148 7-103 (104)
34 cd02956 ybbN ybbN protein fami 99.8 9.9E-19 2.1E-23 129.1 12.1 92 52-146 2-96 (96)
35 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 7.3E-19 1.6E-23 131.9 11.6 100 44-145 1-104 (104)
36 cd02998 PDI_a_ERp38 PDIa famil 99.8 1.9E-18 4.1E-23 129.9 11.5 101 44-145 1-105 (105)
37 cd02948 TRX_NDPK TRX domain, T 99.8 4E-18 8.6E-23 126.9 12.9 96 48-147 5-101 (102)
38 cd02954 DIM1 Dim1 family; Dim1 99.8 2.4E-18 5.2E-23 127.5 10.7 84 50-136 2-88 (114)
39 cd02961 PDI_a_family Protein D 99.8 2.5E-18 5.3E-23 128.2 10.6 98 47-145 2-101 (101)
40 cd02992 PDI_a_QSOX PDIa family 99.8 6.7E-18 1.5E-22 128.0 12.6 99 43-141 1-108 (114)
41 cd02985 TRX_CDSP32 TRX family, 99.8 1.9E-17 4E-22 123.4 12.5 93 49-146 2-100 (103)
42 cd02957 Phd_like Phosducin (Ph 99.8 1.7E-17 3.7E-22 126.0 12.4 88 42-134 3-94 (113)
43 cd02965 HyaE HyaE family; HyaE 99.8 1.3E-17 2.8E-22 122.7 11.2 97 43-142 10-109 (111)
44 TIGR01068 thioredoxin thioredo 99.7 4E-17 8.8E-22 121.7 12.7 98 48-148 1-100 (101)
45 cd02989 Phd_like_TxnDC9 Phosdu 99.7 5.8E-17 1.3E-21 122.5 13.5 89 42-134 3-93 (113)
46 TIGR02187 GlrX_arch Glutaredox 99.7 1.1E-16 2.4E-21 135.9 16.4 189 51-249 11-214 (215)
47 PLN02309 5'-adenylylsulfate re 99.7 4.5E-17 9.7E-22 150.0 13.6 106 41-148 343-456 (457)
48 TIGR00424 APS_reduc 5'-adenyly 99.7 5.2E-17 1.1E-21 149.6 13.5 105 41-147 349-461 (463)
49 cd02984 TRX_PICOT TRX domain, 99.7 2.5E-16 5.4E-21 116.4 12.2 94 49-145 1-96 (97)
50 KOG0190 Protein disulfide isom 99.7 5.3E-17 1.2E-21 148.3 9.6 105 43-150 366-474 (493)
51 KOG0907 Thioredoxin [Posttrans 99.7 3.8E-16 8.3E-21 115.1 11.7 83 59-146 20-103 (106)
52 PLN00410 U5 snRNP protein, DIM 99.7 8.5E-16 1.8E-20 118.5 13.0 83 49-134 10-97 (142)
53 cd02953 DsbDgamma DsbD gamma f 99.7 2.8E-16 6.1E-21 117.6 10.1 93 51-146 2-104 (104)
54 PTZ00102 disulphide isomerase; 99.7 4.4E-16 9.6E-21 149.1 14.0 111 41-152 355-468 (477)
55 PTZ00051 thioredoxin; Provisio 99.7 5E-16 1.1E-20 115.0 11.1 88 49-141 7-95 (98)
56 cd02987 Phd_like_Phd Phosducin 99.7 1.8E-15 4E-20 123.0 13.2 100 42-146 61-172 (175)
57 cd02950 TxlA TRX-like protein 99.7 1.7E-15 3.6E-20 119.3 12.5 98 50-150 10-111 (142)
58 cd02949 TRX_NTR TRX domain, no 99.7 1.9E-15 4.1E-20 111.5 12.0 86 58-146 11-97 (97)
59 cd02986 DLP Dim1 family, Dim1- 99.6 2.1E-15 4.5E-20 110.8 10.5 79 50-131 2-82 (114)
60 KOG0908 Thioredoxin-like prote 99.6 1.5E-15 3.3E-20 123.9 10.8 121 45-169 3-132 (288)
61 cd02947 TRX_family TRX family; 99.6 4.7E-15 1E-19 108.4 11.8 91 51-145 1-92 (93)
62 TIGR01295 PedC_BrcD bacterioci 99.6 1.1E-14 2.4E-19 111.2 12.4 98 43-145 6-120 (122)
63 TIGR01130 ER_PDI_fam protein d 99.6 1.4E-14 3.1E-19 138.2 13.5 111 41-153 344-458 (462)
64 cd02975 PfPDO_like_N Pyrococcu 99.6 2E-14 4.4E-19 108.7 11.2 94 52-149 14-110 (113)
65 cd02983 P5_C P5 family, C-term 99.6 4.1E-14 9E-19 109.1 12.2 115 254-375 3-124 (130)
66 cd02988 Phd_like_VIAF Phosduci 99.5 1.1E-13 2.3E-18 114.1 12.6 86 42-134 81-170 (192)
67 cd02982 PDI_b'_family Protein 99.5 8.8E-14 1.9E-18 103.9 10.3 94 52-148 4-102 (103)
68 cd02951 SoxW SoxW family; SoxW 99.5 1.8E-13 3.8E-18 106.1 11.9 97 51-150 4-120 (125)
69 KOG0191 Thioredoxin/protein di 99.5 8E-14 1.7E-18 128.9 10.2 108 44-152 145-255 (383)
70 PRK03147 thiol-disulfide oxido 99.5 1.1E-12 2.4E-17 107.9 15.0 103 44-148 45-171 (173)
71 TIGR00411 redox_disulf_1 small 99.5 7.7E-13 1.7E-17 94.3 10.8 80 63-148 2-81 (82)
72 cd03072 PDI_b'_ERp44 PDIb' fam 99.5 5.1E-13 1.1E-17 100.2 10.0 105 255-369 1-111 (111)
73 PTZ00062 glutaredoxin; Provisi 99.5 4E-12 8.8E-17 105.0 16.2 108 49-170 5-114 (204)
74 cd02952 TRP14_like Human TRX-r 99.4 8.9E-13 1.9E-17 99.2 10.1 79 49-130 8-103 (119)
75 PRK14018 trifunctional thiored 99.4 1.4E-11 3.1E-16 115.4 14.6 89 58-148 54-172 (521)
76 PRK00293 dipZ thiol:disulfide 99.3 3.4E-11 7.5E-16 116.2 15.6 101 44-148 453-569 (571)
77 TIGR02187 GlrX_arch Glutaredox 99.3 1.6E-11 3.5E-16 104.2 11.3 95 47-147 119-214 (215)
78 PRK15412 thiol:disulfide inter 99.3 9.2E-11 2E-15 97.1 15.6 87 58-150 66-177 (185)
79 cd02959 ERp19 Endoplasmic reti 99.3 5.3E-12 1.1E-16 95.9 7.2 92 51-145 10-109 (117)
80 PHA02125 thioredoxin-like prot 99.3 2.8E-11 6E-16 84.3 9.5 68 64-143 2-71 (75)
81 TIGR00412 redox_disulf_2 small 99.3 2.9E-11 6.3E-16 84.3 8.6 73 64-145 2-75 (76)
82 TIGR02738 TrbB type-F conjugat 99.3 1.3E-10 2.7E-15 92.2 13.1 86 58-148 48-152 (153)
83 PF13098 Thioredoxin_2: Thiore 99.2 3.3E-11 7.2E-16 91.4 8.6 88 58-145 3-112 (112)
84 PRK11509 hydrogenase-1 operon 99.2 2E-10 4.3E-15 87.3 12.1 105 46-152 20-127 (132)
85 cd02955 SSP411 TRX domain, SSP 99.2 6E-11 1.3E-15 90.4 8.7 96 49-147 4-117 (124)
86 PF13848 Thioredoxin_6: Thiore 99.2 7E-10 1.5E-14 92.1 15.9 163 77-249 7-184 (184)
87 TIGR00385 dsbE periplasmic pro 99.2 6.1E-10 1.3E-14 91.3 13.7 86 58-149 61-171 (173)
88 cd03009 TryX_like_TryX_NRX Try 99.1 3.8E-10 8.2E-15 88.1 9.7 73 59-131 17-114 (131)
89 TIGR02740 TraF-like TraF-like 99.1 5.7E-10 1.2E-14 97.4 11.5 87 59-150 165-265 (271)
90 cd02973 TRX_GRX_like Thioredox 99.1 2.6E-10 5.5E-15 77.7 6.9 57 63-123 2-58 (67)
91 cd03073 PDI_b'_ERp72_ERp57 PDI 99.1 1.4E-09 3E-14 81.4 10.7 101 256-366 2-111 (111)
92 cd03010 TlpA_like_DsbE TlpA-li 99.1 9.7E-10 2.1E-14 85.3 10.3 78 59-141 24-126 (127)
93 KOG0914 Thioredoxin-like prote 99.1 9E-10 2E-14 88.5 8.6 90 39-130 120-218 (265)
94 cd02964 TryX_like_family Trypa 99.0 1E-09 2.2E-14 85.8 8.8 73 59-131 16-114 (132)
95 cd02982 PDI_b'_family Protein 99.0 2.1E-09 4.6E-14 80.1 10.2 96 263-366 5-103 (103)
96 cd03011 TlpA_like_ScsD_MtbDsbE 99.0 1.4E-09 3.1E-14 83.9 9.3 90 49-143 9-120 (123)
97 PF13905 Thioredoxin_8: Thiore 99.0 2.6E-09 5.7E-14 78.3 10.0 66 60-126 1-91 (95)
98 KOG0913 Thiol-disulfide isomer 99.0 9E-11 1.9E-15 95.6 2.2 105 42-150 23-127 (248)
99 cd03026 AhpF_NTD_C TRX-GRX-lik 99.0 2.3E-09 4.9E-14 76.9 9.2 77 59-142 11-87 (89)
100 TIGR02661 MauD methylamine deh 99.0 1.3E-08 2.9E-13 84.4 14.6 86 59-147 73-177 (189)
101 cd03008 TryX_like_RdCVF Trypar 99.0 3.5E-09 7.5E-14 83.0 10.3 76 59-134 24-130 (146)
102 cd02966 TlpA_like_family TlpA- 99.0 3E-09 6.6E-14 80.7 9.0 74 59-134 18-116 (116)
103 COG4232 Thiol:disulfide interc 99.0 3.6E-09 7.8E-14 98.5 10.9 101 46-148 457-567 (569)
104 COG2143 Thioredoxin-related pr 99.0 2.3E-08 5E-13 76.2 12.8 94 53-146 35-146 (182)
105 cd02958 UAS UAS family; UAS is 99.0 6.7E-09 1.5E-13 78.8 10.0 90 57-149 14-111 (114)
106 PF07912 ERp29_N: ERp29, N-ter 98.9 3.9E-08 8.4E-13 72.3 13.0 106 43-150 4-120 (126)
107 PRK13728 conjugal transfer pro 98.9 5.8E-08 1.3E-12 78.4 14.7 83 64-151 73-173 (181)
108 TIGR01626 ytfJ_HI0045 conserve 98.8 6.5E-08 1.4E-12 78.6 12.4 126 12-145 8-176 (184)
109 PLN02919 haloacid dehalogenase 98.8 3.9E-08 8.4E-13 101.7 13.9 90 59-150 419-537 (1057)
110 PF13899 Thioredoxin_7: Thiore 98.8 2.1E-08 4.5E-13 71.1 8.2 70 53-126 10-82 (82)
111 cd02967 mauD Methylamine utili 98.8 2.4E-08 5.2E-13 75.8 7.5 60 59-121 20-82 (114)
112 cd02960 AGR Anterior Gradient 98.8 2.9E-08 6.3E-13 75.5 7.1 75 52-130 11-93 (130)
113 smart00594 UAS UAS domain. 98.8 6.6E-08 1.4E-12 74.2 9.2 93 50-145 13-121 (122)
114 PLN02399 phospholipid hydroper 98.7 3.4E-07 7.5E-12 77.8 12.2 89 59-149 98-234 (236)
115 cd03012 TlpA_like_DipZ_like Tl 98.6 2.2E-07 4.7E-12 71.9 9.3 74 59-134 22-124 (126)
116 cd03074 PDI_b'_Calsequestrin_C 98.6 8.4E-07 1.8E-11 63.1 10.7 109 253-366 1-120 (120)
117 PTZ00056 glutathione peroxidas 98.6 4E-07 8.6E-12 76.1 10.6 110 32-150 18-179 (199)
118 PF00085 Thioredoxin: Thioredo 98.6 1.1E-06 2.3E-11 65.3 11.7 100 255-364 1-102 (103)
119 PF08534 Redoxin: Redoxin; In 98.6 1.1E-06 2.5E-11 69.8 12.1 99 30-137 3-136 (146)
120 TIGR02196 GlrX_YruB Glutaredox 98.6 4.3E-07 9.3E-12 62.8 8.4 68 64-145 2-73 (74)
121 KOG2603 Oligosaccharyltransfer 98.6 5E-07 1.1E-11 77.3 10.0 115 40-154 37-171 (331)
122 cd03003 PDI_a_ERdj5_N PDIa fam 98.6 1.2E-06 2.7E-11 64.8 10.9 99 253-361 1-100 (101)
123 KOG2501 Thioredoxin, nucleored 98.5 2.9E-07 6.4E-12 71.4 7.2 73 59-131 32-130 (157)
124 PLN02412 probable glutathione 98.5 1E-06 2.2E-11 71.6 10.8 110 32-150 8-165 (167)
125 cd02969 PRX_like1 Peroxiredoxi 98.5 2.5E-06 5.5E-11 69.8 13.3 92 59-152 24-155 (171)
126 cd03004 PDI_a_ERdj5_C PDIa fam 98.5 1.8E-06 3.9E-11 64.3 11.0 100 253-362 1-104 (104)
127 PF02114 Phosducin: Phosducin; 98.5 1.2E-06 2.5E-11 76.0 11.2 102 42-148 124-237 (265)
128 KOG0912 Thiol-disulfide isomer 98.5 2.8E-06 6.1E-11 72.4 12.2 184 161-364 5-206 (375)
129 PF00578 AhpC-TSA: AhpC/TSA fa 98.5 2.3E-06 4.9E-11 65.9 10.6 93 31-132 3-123 (124)
130 cd01659 TRX_superfamily Thiore 98.4 1.2E-06 2.7E-11 58.4 7.1 60 64-127 1-63 (69)
131 cd03001 PDI_a_P5 PDIa family, 98.4 5.7E-06 1.2E-10 61.3 11.1 98 255-362 2-102 (103)
132 COG0526 TrxA Thiol-disulfide i 98.4 1.8E-06 4E-11 65.5 8.6 69 60-131 32-103 (127)
133 cd03071 PDI_b'_NRX PDIb' famil 98.4 3.7E-06 7.9E-11 59.8 8.8 101 257-366 3-115 (116)
134 PF13728 TraF: F plasmid trans 98.4 3.4E-06 7.4E-11 71.1 10.1 81 59-144 119-213 (215)
135 PF01216 Calsequestrin: Calseq 98.3 2.1E-05 4.6E-10 68.6 14.5 198 153-373 36-254 (383)
136 cd00340 GSH_Peroxidase Glutath 98.3 3.7E-06 8.1E-11 67.3 9.0 43 59-104 21-63 (152)
137 PF13192 Thioredoxin_3: Thiore 98.3 1.1E-05 2.3E-10 56.1 9.5 73 65-146 3-76 (76)
138 KOG1672 ATP binding protein [P 98.3 3E-06 6.5E-11 67.4 7.4 89 42-134 65-155 (211)
139 TIGR01126 pdi_dom protein disu 98.3 1.3E-05 2.8E-10 59.2 10.5 98 258-365 1-101 (102)
140 TIGR02200 GlrX_actino Glutared 98.3 5.1E-06 1.1E-10 57.9 7.7 57 64-130 2-63 (77)
141 cd03066 PDI_b_Calsequestrin_mi 98.3 4E-06 8.6E-11 62.1 7.3 93 153-251 2-101 (102)
142 TIGR02540 gpx7 putative glutat 98.3 1.6E-05 3.4E-10 63.7 11.3 43 59-103 21-63 (153)
143 cd03069 PDI_b_ERp57 PDIb famil 98.3 3.9E-06 8.4E-11 62.3 7.2 91 153-250 2-103 (104)
144 cd02981 PDI_b_family Protein D 98.3 3.8E-06 8.2E-11 61.6 7.0 91 154-250 2-97 (97)
145 cd03002 PDI_a_MPD1_like PDI fa 98.2 1.6E-05 3.5E-10 59.6 10.4 104 255-363 2-109 (109)
146 cd02965 HyaE HyaE family; HyaE 98.2 1.5E-05 3.3E-10 58.9 9.2 83 253-338 10-94 (111)
147 cd02996 PDI_a_ERp44 PDIa famil 98.2 2.3E-05 4.9E-10 58.7 10.1 99 254-362 2-108 (108)
148 cd03065 PDI_b_Calsequestrin_N 98.2 1.5E-05 3.2E-10 60.4 8.9 103 254-366 10-119 (120)
149 PRK10996 thioredoxin 2; Provis 98.2 3.6E-05 7.8E-10 60.4 11.4 100 256-365 38-138 (139)
150 TIGR03137 AhpC peroxiredoxin. 98.2 4.5E-05 9.7E-10 63.2 12.2 110 30-146 5-153 (187)
151 cd03006 PDI_a_EFP1_N PDIa fami 98.1 3.7E-05 8E-10 57.8 10.4 100 252-361 8-112 (113)
152 TIGR02739 TraF type-F conjugat 98.1 2.3E-05 5E-10 67.3 10.3 85 60-149 150-248 (256)
153 TIGR01068 thioredoxin thioredo 98.1 4.4E-05 9.4E-10 56.2 10.7 97 259-365 2-100 (101)
154 cd02989 Phd_like_TxnDC9 Phosdu 98.1 6.1E-05 1.3E-09 56.8 11.3 98 261-362 13-112 (113)
155 TIGR03143 AhpF_homolog putativ 98.1 9.8E-05 2.1E-09 72.1 15.4 178 59-247 365-554 (555)
156 cd02981 PDI_b_family Protein D 98.1 3.9E-05 8.5E-10 56.1 9.7 88 50-147 7-96 (97)
157 cd02961 PDI_a_family Protein D 98.1 5E-05 1.1E-09 55.7 10.1 96 257-362 2-101 (101)
158 cd02998 PDI_a_ERp38 PDIa famil 98.1 4.2E-05 9.1E-10 56.8 9.6 98 255-362 2-105 (105)
159 PTZ00256 glutathione peroxidas 98.1 6.8E-05 1.5E-09 61.9 11.6 64 32-104 19-83 (183)
160 cd02991 UAS_ETEA UAS family, E 98.1 5.7E-05 1.2E-09 57.0 10.0 89 58-150 15-114 (116)
161 cd03072 PDI_b'_ERp44 PDIb' fam 98.1 6.5E-05 1.4E-09 56.3 10.3 104 45-150 1-109 (111)
162 cd03017 PRX_BCP Peroxiredoxin 98.1 4.8E-05 1E-09 59.9 10.0 83 59-143 22-137 (140)
163 cd03007 PDI_a_ERp29_N PDIa fam 98.0 2E-05 4.3E-10 59.0 6.9 94 153-250 3-115 (116)
164 PRK09381 trxA thioredoxin; Pro 98.0 0.00013 2.7E-09 54.7 11.4 102 255-366 5-108 (109)
165 cd03015 PRX_Typ2cys Peroxiredo 98.0 9.7E-05 2.1E-09 60.5 11.4 87 59-147 28-155 (173)
166 TIGR02180 GRX_euk Glutaredoxin 98.0 2.5E-05 5.4E-10 55.5 6.9 60 64-130 1-65 (84)
167 cd02994 PDI_a_TMX PDIa family, 98.0 0.00014 3E-09 53.7 11.0 97 255-364 3-101 (101)
168 cd03005 PDI_a_ERp46 PDIa famil 98.0 8.1E-05 1.8E-09 54.9 9.5 97 255-362 2-102 (102)
169 cd03067 PDI_b_PDIR_N PDIb fami 98.0 7.7E-05 1.7E-09 52.8 8.5 95 49-147 8-110 (112)
170 PTZ00443 Thioredoxin domain-co 98.0 0.00011 2.3E-09 62.3 11.1 105 253-367 30-140 (224)
171 PF14595 Thioredoxin_9: Thiore 98.0 5.4E-05 1.2E-09 58.3 8.2 86 48-137 28-118 (129)
172 cd02970 PRX_like2 Peroxiredoxi 98.0 0.00012 2.5E-09 58.3 10.6 46 61-108 24-70 (149)
173 cd02995 PDI_a_PDI_a'_C PDIa fa 97.9 0.00011 2.4E-09 54.4 9.8 97 255-362 2-104 (104)
174 cd02957 Phd_like Phosducin (Ph 97.9 0.0001 2.2E-09 55.6 9.7 104 254-362 5-112 (113)
175 PRK11200 grxA glutaredoxin 1; 97.9 9.6E-05 2.1E-09 52.6 8.9 76 63-149 2-83 (85)
176 PRK00522 tpx lipid hydroperoxi 97.9 0.00016 3.5E-09 58.7 11.2 64 30-104 21-85 (167)
177 KOG4277 Uncharacterized conser 97.9 0.00024 5.2E-09 60.7 12.3 180 164-364 36-229 (468)
178 PRK13703 conjugal pilus assemb 97.9 8.1E-05 1.7E-09 63.6 9.5 86 60-148 143-240 (248)
179 cd02997 PDI_a_PDIR PDIa family 97.9 0.00012 2.5E-09 54.3 9.4 98 255-362 2-104 (104)
180 PF06110 DUF953: Eukaryotic pr 97.9 9.5E-05 2.1E-09 55.5 8.8 76 51-129 6-101 (119)
181 PRK09437 bcp thioredoxin-depen 97.9 0.00023 5.1E-09 57.0 11.8 66 30-104 7-73 (154)
182 PRK10382 alkyl hydroperoxide r 97.9 0.0003 6.4E-09 58.1 12.5 110 31-147 6-154 (187)
183 cd02983 P5_C P5 family, C-term 97.9 0.00049 1.1E-08 53.1 12.7 108 44-153 3-119 (130)
184 PF03190 Thioredox_DsbH: Prote 97.9 4E-05 8.7E-10 60.7 6.5 82 46-130 23-116 (163)
185 cd02963 TRX_DnaJ TRX domain, D 97.9 0.00015 3.2E-09 54.6 9.4 86 269-364 23-110 (111)
186 cd02999 PDI_a_ERp44_like PDIa 97.9 0.00014 3.1E-09 53.4 9.1 84 268-362 16-100 (100)
187 PRK11509 hydrogenase-1 operon 97.8 0.00019 4E-09 54.9 9.4 116 243-370 10-128 (132)
188 cd03014 PRX_Atyp2cys Peroxired 97.8 0.00011 2.3E-09 58.2 8.2 79 30-119 3-85 (143)
189 cd03068 PDI_b_ERp72 PDIb famil 97.8 6.3E-05 1.4E-09 56.0 6.2 93 153-250 2-107 (107)
190 KOG3414 Component of the U4/U6 97.8 0.00026 5.6E-09 52.2 9.1 79 50-131 11-91 (142)
191 PRK10877 protein disulfide iso 97.8 0.00016 3.4E-09 62.0 9.4 83 59-148 106-230 (232)
192 cd02956 ybbN ybbN protein fami 97.8 0.00033 7.1E-09 51.1 10.0 84 270-363 12-96 (96)
193 cd02968 SCO SCO (an acronym fo 97.8 0.00015 3.2E-09 57.2 8.4 46 59-104 21-68 (142)
194 KOG3425 Uncharacterized conser 97.8 0.00018 3.9E-09 52.7 7.8 74 50-126 12-104 (128)
195 cd02950 TxlA TRX-like protein 97.8 0.00057 1.2E-08 53.8 11.4 101 263-372 13-116 (142)
196 cd02976 NrdH NrdH-redoxin (Nrd 97.7 0.00022 4.7E-09 48.8 7.9 67 64-144 2-72 (73)
197 cd03073 PDI_b'_ERp72_ERp57 PDI 97.7 0.00034 7.4E-09 52.4 9.2 98 47-148 3-110 (111)
198 PF00462 Glutaredoxin: Glutare 97.7 0.00022 4.7E-09 46.9 7.2 55 64-129 1-59 (60)
199 KOG0910 Thioredoxin-like prote 97.7 0.00039 8.4E-09 53.8 9.4 106 252-367 42-149 (150)
200 PF02966 DIM1: Mitosis protein 97.7 0.00082 1.8E-08 50.5 10.7 80 49-131 7-88 (133)
201 PF11009 DUF2847: Protein of u 97.7 0.00054 1.2E-08 50.0 9.4 90 49-141 6-104 (105)
202 cd02987 Phd_like_Phd Phosducin 97.6 0.00079 1.7E-08 55.0 11.0 107 254-365 63-174 (175)
203 cd02993 PDI_a_APS_reductase PD 97.6 0.00074 1.6E-08 50.6 10.1 98 255-362 3-109 (109)
204 PF07449 HyaE: Hydrogenase-1 e 97.6 0.00037 8E-09 51.1 8.0 91 43-136 9-102 (107)
205 PRK15000 peroxidase; Provision 97.6 0.00085 1.8E-08 56.1 11.3 87 59-147 33-160 (200)
206 cd02947 TRX_family TRX family; 97.6 0.00068 1.5E-08 48.5 9.6 90 264-363 4-93 (93)
207 PRK15317 alkyl hydroperoxide r 97.6 0.00075 1.6E-08 65.4 12.3 100 44-150 99-199 (517)
208 cd03018 PRX_AhpE_like Peroxire 97.6 0.00063 1.4E-08 54.1 9.8 66 31-104 5-71 (149)
209 PTZ00137 2-Cys peroxiredoxin; 97.6 0.002 4.3E-08 55.8 13.0 87 59-147 97-223 (261)
210 KOG0911 Glutaredoxin-related p 97.6 0.00013 2.8E-09 60.0 5.3 79 56-138 13-92 (227)
211 cd02949 TRX_NTR TRX domain, no 97.6 0.0012 2.6E-08 48.2 9.9 88 266-363 9-97 (97)
212 TIGR02183 GRXA Glutaredoxin, G 97.5 0.00074 1.6E-08 48.1 8.2 74 64-148 2-81 (86)
213 cd03020 DsbA_DsbC_DsbG DsbA fa 97.5 0.00046 1E-08 57.8 8.3 84 59-145 76-197 (197)
214 cd03000 PDI_a_TMX3 PDIa family 97.5 0.0012 2.6E-08 48.9 9.7 93 261-365 7-103 (104)
215 cd02971 PRX_family Peroxiredox 97.5 0.00097 2.1E-08 52.3 9.6 45 59-105 21-66 (140)
216 PTZ00051 thioredoxin; Provisio 97.5 0.0012 2.7E-08 48.2 9.4 76 259-338 7-82 (98)
217 PRK13190 putative peroxiredoxi 97.5 0.0012 2.5E-08 55.5 10.4 88 59-148 26-153 (202)
218 cd02988 Phd_like_VIAF Phosduci 97.5 0.003 6.4E-08 52.4 12.3 109 250-365 79-191 (192)
219 cd02948 TRX_NDPK TRX domain, T 97.4 0.0026 5.7E-08 46.9 10.5 95 258-364 5-101 (102)
220 cd02975 PfPDO_like_N Pyrococcu 97.4 0.0016 3.5E-08 49.0 9.4 91 269-367 21-111 (113)
221 PRK10606 btuE putative glutath 97.4 0.00054 1.2E-08 56.2 7.1 81 59-150 24-116 (183)
222 COG3118 Thioredoxin domain-con 97.4 0.002 4.3E-08 55.7 10.7 106 253-368 23-132 (304)
223 cd02953 DsbDgamma DsbD gamma f 97.4 0.0021 4.6E-08 47.6 9.7 93 262-363 3-104 (104)
224 TIGR03143 AhpF_homolog putativ 97.4 0.0065 1.4E-07 59.5 15.1 145 205-362 407-554 (555)
225 cd03016 PRX_1cys Peroxiredoxin 97.3 0.0032 7E-08 52.9 11.1 85 62-148 28-153 (203)
226 cd02984 TRX_PICOT TRX domain, 97.3 0.0034 7.3E-08 45.7 9.9 75 260-338 2-79 (97)
227 cd03419 GRX_GRXh_1_2_like Glut 97.3 0.00096 2.1E-08 46.9 6.6 58 64-130 2-64 (82)
228 cd02962 TMX2 TMX2 family; comp 97.3 0.0055 1.2E-07 48.6 10.9 83 254-338 29-119 (152)
229 PRK13599 putative peroxiredoxi 97.2 0.0051 1.1E-07 52.0 11.3 87 60-148 28-155 (215)
230 TIGR03140 AhpF alkyl hydropero 97.2 0.0045 9.7E-08 60.0 12.3 98 44-148 100-198 (515)
231 cd03067 PDI_b_PDIR_N PDIb fami 97.2 0.0054 1.2E-07 43.6 8.7 96 261-364 10-110 (112)
232 cd03023 DsbA_Com1_like DsbA fa 97.2 0.004 8.7E-08 49.6 9.5 31 59-89 4-34 (154)
233 cd02954 DIM1 Dim1 family; Dim1 97.1 0.011 2.4E-07 44.2 10.5 65 270-338 14-79 (114)
234 PF13462 Thioredoxin_4: Thiore 97.1 0.011 2.4E-07 47.6 11.6 84 59-147 11-162 (162)
235 cd03069 PDI_b_ERp57 PDIb famil 97.1 0.0094 2E-07 44.1 10.2 89 49-148 7-103 (104)
236 cd02066 GRX_family Glutaredoxi 97.1 0.0029 6.3E-08 42.9 6.9 56 64-130 2-61 (72)
237 PRK13189 peroxiredoxin; Provis 97.1 0.011 2.4E-07 50.3 11.6 88 59-148 34-162 (222)
238 PF05768 DUF836: Glutaredoxin- 97.0 0.0046 1E-07 43.4 7.7 77 64-146 2-81 (81)
239 PRK13191 putative peroxiredoxi 97.0 0.012 2.6E-07 49.8 11.3 88 59-148 32-160 (215)
240 TIGR02194 GlrX_NrdH Glutaredox 97.0 0.0018 3.8E-08 44.4 5.1 65 65-142 2-69 (72)
241 PHA02278 thioredoxin-like prot 97.0 0.013 2.9E-07 43.1 10.1 91 261-361 5-100 (103)
242 TIGR00424 APS_reduc 5'-adenyly 97.0 0.012 2.5E-07 55.5 12.0 105 252-365 350-462 (463)
243 TIGR02189 GlrX-like_plant Glut 97.0 0.0031 6.7E-08 46.1 6.6 56 64-130 10-72 (99)
244 TIGR02190 GlrX-dom Glutaredoxi 97.0 0.0022 4.9E-08 44.7 5.7 59 61-130 7-68 (79)
245 PRK11657 dsbG disulfide isomer 96.9 0.011 2.4E-07 51.3 10.6 82 60-146 117-249 (251)
246 cd03029 GRX_hybridPRX5 Glutare 96.9 0.0081 1.7E-07 41.0 7.9 66 64-145 3-71 (72)
247 PLN02309 5'-adenylylsulfate re 96.9 0.016 3.4E-07 54.5 12.0 105 252-365 344-456 (457)
248 KOG3170 Conserved phosducin-li 96.9 0.012 2.6E-07 47.5 9.4 108 42-157 90-208 (240)
249 cd02985 TRX_CDSP32 TRX family, 96.8 0.024 5.2E-07 41.8 10.5 65 270-338 15-82 (103)
250 cd03418 GRX_GRXb_1_3_like Glut 96.8 0.0054 1.2E-07 42.2 6.4 56 64-130 2-62 (75)
251 PHA03050 glutaredoxin; Provisi 96.8 0.0053 1.2E-07 45.6 6.7 68 53-130 6-80 (108)
252 TIGR02181 GRX_bact Glutaredoxi 96.8 0.0026 5.6E-08 44.4 4.7 56 64-130 1-60 (79)
253 cd03066 PDI_b_Calsequestrin_mi 96.8 0.037 7.9E-07 40.7 10.9 93 46-148 3-100 (102)
254 cd03027 GRX_DEP Glutaredoxin ( 96.7 0.0067 1.4E-07 41.6 6.4 56 64-130 3-62 (73)
255 PRK10329 glutaredoxin-like pro 96.7 0.0077 1.7E-07 42.2 6.7 70 64-147 3-75 (81)
256 cd02992 PDI_a_QSOX PDIa family 96.7 0.038 8.3E-07 41.6 11.0 80 255-338 3-89 (114)
257 cd02951 SoxW SoxW family; SoxW 96.7 0.022 4.7E-07 43.7 9.9 98 263-369 6-122 (125)
258 TIGR01295 PedC_BrcD bacterioci 96.7 0.025 5.5E-07 43.1 10.0 102 255-363 8-121 (122)
259 TIGR00411 redox_disulf_1 small 96.7 0.018 4E-07 40.2 8.7 75 278-365 6-81 (82)
260 PTZ00253 tryparedoxin peroxida 96.6 0.02 4.4E-07 47.9 9.8 86 59-146 35-161 (199)
261 KOG2640 Thioredoxin [Function 96.6 0.0023 5E-08 55.4 4.0 90 58-151 74-164 (319)
262 TIGR00365 monothiol glutaredox 96.6 0.011 2.4E-07 43.1 6.9 68 51-130 3-78 (97)
263 PLN00410 U5 snRNP protein, DIM 96.5 0.07 1.5E-06 41.6 11.2 98 269-370 22-124 (142)
264 cd02986 DLP Dim1 family, Dim1- 96.5 0.076 1.6E-06 39.5 10.6 65 269-337 13-78 (114)
265 TIGR03140 AhpF alkyl hydropero 96.5 0.14 3E-06 49.7 15.7 114 216-333 60-176 (515)
266 PRK15317 alkyl hydroperoxide r 96.4 0.12 2.7E-06 50.1 15.3 114 217-333 60-175 (517)
267 COG0695 GrxC Glutaredoxin and 96.3 0.014 3.1E-07 40.7 5.8 51 64-123 3-59 (80)
268 PF13743 Thioredoxin_5: Thiore 96.2 0.0067 1.5E-07 49.6 4.4 36 66-104 2-37 (176)
269 cd03028 GRX_PICOT_like Glutare 96.1 0.024 5.1E-07 40.7 6.5 64 55-130 3-74 (90)
270 cd02972 DsbA_family DsbA famil 96.1 0.024 5.2E-07 40.8 6.6 59 64-125 1-91 (98)
271 PF02114 Phosducin: Phosducin; 96.0 0.045 9.7E-07 47.7 8.8 109 252-365 124-237 (265)
272 cd02955 SSP411 TRX domain, SSP 96.0 0.073 1.6E-06 40.7 8.9 105 258-366 3-119 (124)
273 PF07912 ERp29_N: ERp29, N-ter 95.9 0.39 8.4E-06 36.0 11.7 103 254-364 5-117 (126)
274 cd03026 AhpF_NTD_C TRX-GRX-lik 95.9 0.056 1.2E-06 38.6 7.3 63 268-333 9-71 (89)
275 PRK10638 glutaredoxin 3; Provi 95.8 0.026 5.7E-07 39.7 5.4 56 64-130 4-63 (83)
276 cd03068 PDI_b_ERp72 PDIb famil 95.7 0.12 2.6E-06 38.4 8.9 95 259-364 7-106 (107)
277 PRK10824 glutaredoxin-4; Provi 95.7 0.03 6.6E-07 41.9 5.5 68 51-130 6-81 (115)
278 COG1225 Bcp Peroxiredoxin [Pos 95.7 0.049 1.1E-06 43.1 6.9 79 28-115 5-87 (157)
279 KOG0907 Thioredoxin [Posttrans 95.6 0.092 2E-06 38.8 7.8 65 270-338 21-85 (106)
280 cd02973 TRX_GRX_like Thioredox 95.4 0.085 1.8E-06 35.2 6.6 50 281-333 9-58 (67)
281 KOG1672 ATP binding protein [P 95.4 0.13 2.8E-06 41.6 8.2 116 243-363 57-175 (211)
282 cd02952 TRP14_like Human TRX-r 95.3 0.17 3.7E-06 38.2 8.3 66 270-337 21-100 (119)
283 KOG0908 Thioredoxin-like prote 95.0 0.064 1.4E-06 45.2 5.7 96 152-250 2-105 (288)
284 PRK03147 thiol-disulfide oxido 94.8 0.34 7.4E-06 39.3 9.8 86 271-365 62-171 (173)
285 PTZ00062 glutaredoxin; Provisi 94.6 0.37 7.9E-06 40.3 9.4 67 261-338 7-73 (204)
286 PF00837 T4_deiodinase: Iodoth 93.9 0.73 1.6E-05 39.0 9.8 59 41-102 80-141 (237)
287 cd03070 PDI_b_ERp44 PDIb famil 93.8 0.16 3.4E-06 36.2 4.9 78 154-239 2-85 (91)
288 cd03013 PRX5_like Peroxiredoxi 93.8 0.19 4E-06 40.2 6.0 54 60-115 29-88 (155)
289 TIGR02740 TraF-like TraF-like 93.8 0.77 1.7E-05 40.4 10.2 89 270-367 166-265 (271)
290 KOG1731 FAD-dependent sulfhydr 93.7 0.38 8.3E-06 45.7 8.5 92 153-247 41-149 (606)
291 PRK10954 periplasmic protein d 93.7 0.28 6.2E-06 41.3 7.2 40 61-103 38-80 (207)
292 PRK12759 bifunctional gluaredo 93.5 0.15 3.3E-06 47.7 5.7 51 64-123 4-66 (410)
293 KOG2603 Oligosaccharyltransfer 93.4 1.3 2.8E-05 38.9 10.6 120 242-366 29-166 (331)
294 KOG3171 Conserved phosducin-li 93.4 0.53 1.2E-05 38.7 7.7 86 41-131 136-225 (273)
295 KOG1752 Glutaredoxin and relat 93.2 0.49 1.1E-05 34.7 6.7 63 52-123 6-73 (104)
296 PF13098 Thioredoxin_2: Thiore 93.2 0.48 1E-05 35.2 7.1 84 269-362 4-112 (112)
297 cd03019 DsbA_DsbA DsbA family, 92.9 0.18 3.9E-06 41.1 4.7 42 59-103 14-55 (178)
298 PRK00293 dipZ thiol:disulfide 92.9 1.3 2.8E-05 43.6 11.2 91 268-366 472-570 (571)
299 PF13728 TraF: F plasmid trans 92.7 0.79 1.7E-05 38.8 8.3 81 271-360 121-212 (215)
300 PRK13703 conjugal pilus assemb 92.6 1.2 2.5E-05 38.5 9.3 90 271-369 144-244 (248)
301 COG4232 Thiol:disulfide interc 92.5 0.96 2.1E-05 43.4 9.3 96 154-250 457-567 (569)
302 cd02958 UAS UAS family; UAS is 92.4 1.8 3.8E-05 32.4 9.3 94 265-367 12-112 (114)
303 TIGR02739 TraF type-F conjugat 92.4 1.2 2.6E-05 38.6 9.2 88 271-367 151-249 (256)
304 COG1999 Uncharacterized protei 92.3 4.5 9.9E-05 34.0 12.4 54 51-104 58-113 (207)
305 PF07449 HyaE: Hydrogenase-1 e 91.8 0.38 8.1E-06 35.4 4.6 81 254-337 10-92 (107)
306 PF11009 DUF2847: Protein of u 91.2 3.1 6.8E-05 30.5 8.8 92 259-358 6-104 (105)
307 smart00594 UAS UAS domain. 91.0 3 6.5E-05 31.6 9.2 55 302-362 62-121 (122)
308 cd02959 ERp19 Endoplasmic reti 90.8 2.1 4.6E-05 32.2 8.1 76 261-338 10-87 (117)
309 cd02966 TlpA_like_family TlpA- 90.5 2.6 5.7E-05 30.8 8.5 67 270-340 19-110 (116)
310 PRK14018 trifunctional thiored 90.2 2.6 5.7E-05 40.6 9.9 44 313-364 128-171 (521)
311 PF02630 SCO1-SenC: SCO1/SenC; 89.7 1.5 3.3E-05 35.7 7.0 46 59-104 51-97 (174)
312 PF14595 Thioredoxin_9: Thiore 89.4 3.2 6.9E-05 31.9 8.1 80 258-337 28-107 (129)
313 KOG3414 Component of the U4/U6 89.4 5.7 0.00012 29.9 8.9 69 266-337 18-87 (142)
314 cd02978 KaiB_like KaiB-like fa 89.4 2.1 4.6E-05 28.9 6.1 61 63-125 3-63 (72)
315 KOG3170 Conserved phosducin-li 88.9 8.8 0.00019 31.6 10.3 117 241-364 79-199 (240)
316 PF13192 Thioredoxin_3: Thiore 88.8 5.7 0.00012 27.1 8.7 68 282-363 9-76 (76)
317 KOG0914 Thioredoxin-like prote 87.9 1.1 2.3E-05 37.2 4.7 66 271-337 145-215 (265)
318 PRK15412 thiol:disulfide inter 87.6 7.5 0.00016 31.9 9.9 48 315-370 133-180 (185)
319 TIGR00385 dsbE periplasmic pro 87.6 7.9 0.00017 31.4 9.9 45 314-366 127-171 (173)
320 cd03010 TlpA_like_DsbE TlpA-li 87.6 5.3 0.00011 30.3 8.5 65 270-339 25-112 (127)
321 COG3019 Predicted metal-bindin 87.5 3.3 7.1E-05 31.8 6.7 74 63-149 27-104 (149)
322 cd02969 PRX_like1 Peroxiredoxi 87.4 11 0.00023 30.4 10.6 57 314-373 99-159 (171)
323 TIGR00412 redox_disulf_2 small 87.2 6.3 0.00014 26.9 7.8 47 281-333 8-55 (76)
324 cd03011 TlpA_like_ScsD_MtbDsbE 86.5 4.6 9.9E-05 30.4 7.5 37 314-359 83-119 (123)
325 PF09673 TrbC_Ftype: Type-F co 85.1 3.4 7.4E-05 30.9 5.9 45 77-126 36-80 (113)
326 cd03040 GST_N_mPGES2 GST_N fam 85.1 8.9 0.00019 26.0 7.8 73 64-149 2-76 (77)
327 cd03031 GRX_GRX_like Glutaredo 84.8 3.1 6.7E-05 32.8 5.8 51 64-123 2-66 (147)
328 TIGR02742 TrbC_Ftype type-F co 84.0 4.4 9.5E-05 31.1 6.1 65 78-148 38-114 (130)
329 cd03009 TryX_like_TryX_NRX Try 83.9 8.3 0.00018 29.4 8.0 24 315-341 90-113 (131)
330 TIGR02738 TrbB type-F conjugat 83.2 21 0.00046 28.3 11.0 85 271-365 51-152 (153)
331 PF02966 DIM1: Mitosis protein 82.5 12 0.00026 28.6 7.8 66 266-335 15-81 (133)
332 PHA03075 glutaredoxin-like pro 81.7 8.6 0.00019 28.5 6.5 36 61-103 2-37 (123)
333 PF01323 DSBA: DSBA-like thior 80.8 13 0.00028 30.5 8.6 38 64-103 2-39 (193)
334 cd03041 GST_N_2GST_N GST_N fam 80.2 16 0.00034 24.8 7.8 71 64-148 2-76 (77)
335 cd02974 AhpF_NTD_N Alkyl hydro 79.8 20 0.00043 25.8 8.9 71 59-145 18-90 (94)
336 COG1331 Highly conserved prote 79.4 9 0.0002 37.8 7.8 82 46-130 29-122 (667)
337 KOG2507 Ubiquitin regulatory p 78.9 20 0.00043 33.2 9.2 91 58-149 16-111 (506)
338 PF13905 Thioredoxin_8: Thiore 78.7 4.7 0.0001 28.7 4.6 54 174-227 38-92 (95)
339 cd01659 TRX_superfamily Thiore 78.4 13 0.00029 23.0 7.1 51 284-337 10-63 (69)
340 cd02977 ArsC_family Arsenate R 77.1 2.5 5.4E-05 31.1 2.8 33 65-106 2-34 (105)
341 KOG3171 Conserved phosducin-li 76.8 14 0.0003 30.8 7.0 61 272-337 161-221 (273)
342 PF13417 GST_N_3: Glutathione 75.7 22 0.00047 24.0 9.5 72 66-151 1-73 (75)
343 TIGR02654 circ_KaiB circadian 75.4 17 0.00037 25.6 6.3 74 61-136 3-76 (87)
344 cd03037 GST_N_GRX2 GST_N famil 75.1 21 0.00046 23.6 7.1 68 66-146 3-70 (71)
345 PF13743 Thioredoxin_5: Thiore 75.1 2.1 4.5E-05 35.0 2.0 33 107-139 137-172 (176)
346 PF05768 DUF836: Glutaredoxin- 75.0 12 0.00026 25.9 5.7 78 276-363 3-81 (81)
347 cd03060 GST_N_Omega_like GST_N 74.7 19 0.00041 23.9 6.5 52 65-123 2-54 (71)
348 PF06053 DUF929: Domain of unk 73.8 6.9 0.00015 33.7 4.9 33 44-79 45-77 (249)
349 PF00578 AhpC-TSA: AhpC/TSA fa 73.8 18 0.00039 27.0 6.9 43 269-311 24-68 (124)
350 cd02964 TryX_like_family Trypa 73.4 32 0.0007 26.2 8.3 23 315-340 90-112 (132)
351 cd03035 ArsC_Yffb Arsenate Red 73.3 3.7 7.9E-05 30.3 2.8 19 65-83 2-20 (105)
352 PRK09301 circadian clock prote 73.2 19 0.00042 26.2 6.3 75 61-137 6-80 (103)
353 TIGR01617 arsC_related transcr 71.8 7.4 0.00016 29.2 4.2 34 65-107 2-35 (117)
354 PHA02125 thioredoxin-like prot 71.6 24 0.00051 23.9 6.4 44 281-332 8-51 (75)
355 PLN02919 haloacid dehalogenase 71.2 32 0.0007 36.8 10.1 90 269-367 419-537 (1057)
356 cd02978 KaiB_like KaiB-like fa 70.4 18 0.00038 24.5 5.2 58 275-336 5-64 (72)
357 KOG2792 Putative cytochrome C 69.9 63 0.0014 28.0 9.5 84 161-253 193-277 (280)
358 cd03025 DsbA_FrnE_like DsbA fa 69.1 31 0.00067 28.2 7.9 26 64-89 3-28 (193)
359 KOG2501 Thioredoxin, nucleored 68.6 37 0.00081 26.9 7.5 80 251-340 44-128 (157)
360 COG0278 Glutaredoxin-related p 68.4 24 0.00053 25.5 5.8 72 51-130 6-82 (105)
361 cd03036 ArsC_like Arsenate Red 67.9 5.6 0.00012 29.6 2.8 33 65-106 2-34 (111)
362 cd00570 GST_N_family Glutathio 67.9 21 0.00047 22.8 5.6 52 65-123 2-55 (71)
363 cd03014 PRX_Atyp2cys Peroxired 66.7 53 0.0012 25.3 8.4 27 314-340 93-122 (143)
364 PRK01655 spxA transcriptional 66.2 7.6 0.00016 29.9 3.3 34 64-106 2-35 (131)
365 PF01323 DSBA: DSBA-like thior 65.6 11 0.00023 31.0 4.4 37 106-145 156-192 (193)
366 KOG0855 Alkyl hydroperoxide re 64.9 12 0.00026 29.8 4.1 49 33-88 69-123 (211)
367 COG3531 Predicted protein-disu 64.5 14 0.00031 30.4 4.5 42 107-148 164-208 (212)
368 cd03059 GST_N_SspA GST_N famil 63.8 12 0.00025 25.0 3.6 69 65-147 2-71 (73)
369 PF07689 KaiB: KaiB domain; I 63.6 4.3 9.4E-05 28.3 1.3 55 67-123 3-57 (82)
370 TIGR02661 MauD methylamine deh 63.1 84 0.0018 25.8 10.2 48 314-370 136-183 (189)
371 PF05984 Cytomega_UL20A: Cytom 62.1 12 0.00026 25.7 3.1 25 4-29 1-25 (100)
372 PRK13728 conjugal transfer pro 62.0 88 0.0019 25.7 10.0 86 274-367 73-172 (181)
373 PF13778 DUF4174: Domain of un 61.9 66 0.0014 24.2 8.9 86 272-364 11-110 (118)
374 PRK11200 grxA glutaredoxin 1; 61.6 51 0.0011 22.8 6.8 57 276-333 4-64 (85)
375 cd03051 GST_N_GTT2_like GST_N 61.5 17 0.00037 24.0 4.1 52 65-123 2-57 (74)
376 cd02967 mauD Methylamine utili 61.3 34 0.00074 25.0 6.1 20 317-339 88-107 (114)
377 PRK12559 transcriptional regul 60.8 11 0.00024 29.0 3.3 19 64-82 2-20 (131)
378 cd02991 UAS_ETEA UAS family, E 60.6 69 0.0015 24.0 9.3 59 303-367 53-114 (116)
379 PF13899 Thioredoxin_7: Thiore 58.8 56 0.0012 22.4 6.7 69 263-336 10-82 (82)
380 PRK13617 psbV cytochrome c-550 58.0 4.9 0.00011 32.2 0.9 31 40-78 46-76 (170)
381 cd03045 GST_N_Delta_Epsilon GS 57.8 44 0.00095 22.1 5.7 52 65-123 2-57 (74)
382 KOG1422 Intracellular Cl- chan 57.2 67 0.0014 26.9 7.2 69 71-152 20-88 (221)
383 PF03190 Thioredox_DsbH: Prote 57.0 1E+02 0.0022 24.8 8.7 93 243-338 8-113 (163)
384 cd03032 ArsC_Spx Arsenate Redu 57.0 14 0.00031 27.6 3.3 34 64-106 2-35 (115)
385 COG2761 FrnE Predicted dithiol 56.9 19 0.0004 30.6 4.2 41 108-151 175-215 (225)
386 COG3634 AhpF Alkyl hydroperoxi 53.5 78 0.0017 29.0 7.6 94 46-146 101-195 (520)
387 PRK13344 spxA transcriptional 53.3 17 0.00037 28.0 3.2 34 64-106 2-35 (132)
388 TIGR02742 TrbC_Ftype type-F co 52.2 76 0.0016 24.4 6.5 44 205-248 59-112 (130)
389 TIGR03521 GldG gliding-associa 51.3 2.5E+02 0.0055 27.7 13.0 78 42-119 29-116 (552)
390 PRK10382 alkyl hydroperoxide r 50.4 1.4E+02 0.0031 24.5 9.4 69 302-373 91-168 (187)
391 cd02990 UAS_FAF1 UAS family, F 49.9 1.2E+02 0.0026 23.5 10.4 88 57-148 18-132 (136)
392 cd03074 PDI_b'_Calsequestrin_C 49.8 1E+02 0.0022 22.7 9.8 88 60-148 20-119 (120)
393 PF04134 DUF393: Protein of un 49.6 33 0.00072 25.3 4.3 57 67-128 2-61 (114)
394 cd03055 GST_N_Omega GST_N fami 49.6 88 0.0019 21.8 6.5 53 64-123 19-72 (89)
395 PF04592 SelP_N: Selenoprotein 49.6 41 0.00089 28.6 5.1 46 59-104 25-71 (238)
396 PRK09810 entericidin A; Provis 48.1 19 0.00041 21.3 2.1 20 3-22 1-20 (41)
397 PRK13730 conjugal transfer pil 47.9 36 0.00078 28.3 4.4 43 105-147 150-192 (212)
398 cd03022 DsbA_HCCA_Iso DsbA fam 47.8 25 0.00053 28.8 3.7 35 107-145 157-191 (192)
399 cd03033 ArsC_15kD Arsenate Red 47.5 26 0.00055 26.2 3.3 18 64-81 2-19 (113)
400 PF06491 Disulph_isomer: Disul 47.0 1.3E+02 0.0028 23.1 10.6 99 44-147 17-130 (136)
401 COG4545 Glutaredoxin-related p 46.1 18 0.00039 24.5 2.0 24 65-88 5-28 (85)
402 COG2143 Thioredoxin-related pr 46.1 44 0.00096 26.5 4.4 37 206-242 104-140 (182)
403 COG0821 gcpE 1-hydroxy-2-methy 45.9 74 0.0016 28.7 6.3 79 71-149 263-351 (361)
404 PF09822 ABC_transp_aux: ABC-t 45.7 2.1E+02 0.0045 25.0 11.8 66 257-322 11-86 (271)
405 PLN02399 phospholipid hydroper 45.6 2E+02 0.0043 24.8 10.1 35 328-367 201-235 (236)
406 PF08534 Redoxin: Redoxin; In 44.9 1.4E+02 0.0031 22.9 7.6 28 314-341 95-128 (146)
407 PF13778 DUF4174: Domain of un 44.4 1.3E+02 0.0029 22.5 9.0 92 55-148 5-111 (118)
408 PF04551 GcpE: GcpE protein; 44.3 45 0.00098 30.4 4.8 85 59-148 263-358 (359)
409 PF09695 YtfJ_HI0045: Bacteria 43.8 67 0.0015 25.6 5.1 52 307-367 108-159 (160)
410 TIGR02654 circ_KaiB circadian 43.6 84 0.0018 22.2 5.1 58 276-337 8-67 (87)
411 cd03024 DsbA_FrnE DsbA family, 43.6 37 0.00081 28.0 4.2 37 106-145 164-200 (201)
412 cd03008 TryX_like_RdCVF Trypar 43.2 46 0.00099 26.2 4.3 53 175-227 69-122 (146)
413 cd03012 TlpA_like_DipZ_like Tl 42.9 86 0.0019 23.5 5.8 33 204-236 92-124 (126)
414 PF02885 Glycos_trans_3N: Glyc 41.6 9.2 0.0002 25.3 0.1 26 351-376 13-38 (66)
415 PRK09301 circadian clock prote 41.0 99 0.0021 22.6 5.3 61 273-337 8-70 (103)
416 COG1651 DsbG Protein-disulfide 40.6 54 0.0012 28.1 4.8 40 205-250 203-242 (244)
417 TIGR01626 ytfJ_HI0045 conserve 40.5 2.1E+02 0.0045 23.6 8.7 48 306-363 129-177 (184)
418 COG1393 ArsC Arsenate reductas 39.9 40 0.00088 25.3 3.4 21 64-84 3-23 (117)
419 PRK15000 peroxidase; Provision 39.5 2.2E+02 0.0048 23.6 8.8 58 314-373 108-173 (200)
420 TIGR03137 AhpC peroxiredoxin. 39.0 2.2E+02 0.0047 23.3 8.7 28 313-340 101-131 (187)
421 PF09822 ABC_transp_aux: ABC-t 38.6 2.7E+02 0.0058 24.3 12.8 78 42-119 6-90 (271)
422 COG3915 Uncharacterized protei 37.6 1.9E+02 0.004 22.4 6.4 88 42-135 32-123 (155)
423 PF08806 Sep15_SelM: Sep15/Sel 37.2 50 0.0011 22.8 3.2 36 216-251 40-76 (78)
424 PLN02412 probable glutathione 37.0 2.2E+02 0.0047 22.8 9.2 35 328-367 131-165 (167)
425 PRK00366 ispG 4-hydroxy-3-meth 36.9 1.4E+02 0.0031 27.2 6.8 76 71-146 270-354 (360)
426 TIGR02183 GRXA Glutaredoxin, G 35.9 1.5E+02 0.0032 20.6 6.0 57 276-333 3-63 (86)
427 PF09673 TrbC_Ftype: Type-F co 35.7 1.8E+02 0.004 21.6 6.7 23 204-226 58-80 (113)
428 PF12563 Hemolysin_N: Hemolyti 35.1 33 0.00071 27.8 2.3 13 41-53 43-55 (187)
429 PF06764 DUF1223: Protein of u 34.9 1.9E+02 0.004 24.3 6.8 24 65-88 3-26 (202)
430 PRK10299 PhoPQ regulatory prot 34.7 29 0.00062 21.0 1.4 11 4-14 1-11 (47)
431 COG3411 Ferredoxin [Energy pro 34.7 78 0.0017 20.8 3.5 30 118-150 17-46 (64)
432 COG5510 Predicted small secret 34.1 57 0.0012 19.5 2.6 6 4-9 2-7 (44)
433 cd03030 GRX_SH3BGR Glutaredoxi 34.0 1.7E+02 0.0038 20.8 5.9 50 71-122 8-65 (92)
434 PF15284 PAGK: Phage-encoded v 33.3 48 0.001 21.4 2.4 19 4-22 1-19 (61)
435 cd03019 DsbA_DsbA DsbA family, 33.0 64 0.0014 25.8 3.9 23 106-130 132-154 (178)
436 cd03034 ArsC_ArsC Arsenate Red 32.8 48 0.001 24.6 2.8 18 65-82 2-19 (112)
437 PF07689 KaiB: KaiB domain; I 32.6 32 0.0007 24.0 1.7 49 281-332 6-56 (82)
438 COG1651 DsbG Protein-disulfide 31.3 67 0.0014 27.5 3.9 38 107-148 205-242 (244)
439 PRK14864 putative biofilm stre 30.9 45 0.00097 24.5 2.3 23 3-25 2-24 (104)
440 TIGR00014 arsC arsenate reduct 30.4 55 0.0012 24.4 2.8 20 65-84 2-21 (114)
441 cd02970 PRX_like2 Peroxiredoxi 30.1 2.1E+02 0.0045 21.8 6.3 66 270-338 23-90 (149)
442 cd03052 GST_N_GDAP1 GST_N fami 29.6 1.7E+02 0.0038 19.4 6.6 67 65-145 2-72 (73)
443 PRK09738 small toxic polypepti 29.4 61 0.0013 20.3 2.3 24 3-26 2-25 (52)
444 PF02645 DegV: Uncharacterised 28.9 2.1E+02 0.0045 25.3 6.6 101 204-312 11-118 (280)
445 PRK10877 protein disulfide iso 28.4 95 0.0021 26.6 4.3 41 205-250 190-230 (232)
446 PF08139 LPAM_1: Prokaryotic m 28.4 40 0.00086 17.5 1.2 11 11-21 13-23 (25)
447 COG4594 FecB ABC-type Fe3+-cit 28.3 1.8E+02 0.004 25.3 5.7 17 263-279 235-251 (310)
448 PTZ00253 tryparedoxin peroxida 28.3 3.4E+02 0.0074 22.4 7.9 26 314-339 110-138 (199)
449 cd03025 DsbA_FrnE_like DsbA fa 28.1 49 0.0011 27.0 2.4 22 107-128 159-180 (193)
450 PLN03207 stomagen; Provisional 28.0 63 0.0014 23.1 2.4 14 59-72 63-76 (113)
451 PRK10954 periplasmic protein d 27.9 53 0.0012 27.5 2.6 21 108-130 158-178 (207)
452 PRK13191 putative peroxiredoxi 27.8 3.7E+02 0.008 22.6 8.7 51 314-366 106-161 (215)
453 TIGR00612 ispG_gcpE 1-hydroxy- 27.7 1.1E+02 0.0024 27.7 4.5 68 59-131 254-330 (346)
454 PF10281 Ish1: Putative stress 27.1 1.2E+02 0.0026 17.4 3.2 27 237-263 3-30 (38)
455 PRK13620 psbV cytochrome c-550 26.6 44 0.00096 27.7 1.8 29 40-76 91-119 (215)
456 PTZ00056 glutathione peroxidas 26.1 3.8E+02 0.0082 22.2 9.1 34 330-368 147-180 (199)
457 PF11337 DUF3139: Protein of u 25.3 83 0.0018 22.0 2.8 9 4-12 1-9 (85)
458 PTZ00137 2-Cys peroxiredoxin; 24.5 4.8E+02 0.01 22.9 8.9 67 303-373 162-236 (261)
459 cd03017 PRX_BCP Peroxiredoxin 24.5 1.9E+02 0.0041 21.9 5.0 41 204-244 87-136 (140)
460 PF09702 Cas_Csa5: CRISPR-asso 23.4 1.3E+02 0.0029 21.9 3.4 37 325-367 51-87 (105)
461 PF00255 GSHPx: Glutathione pe 23.0 3.2E+02 0.0069 20.2 6.2 44 59-105 20-63 (108)
462 PRK13730 conjugal transfer pil 22.9 3.6E+02 0.0078 22.6 6.3 42 205-248 150-191 (212)
463 KOG0852 Alkyl hydroperoxide re 22.8 1.9E+02 0.0041 23.6 4.5 45 59-103 32-77 (196)
464 cd03016 PRX_1cys Peroxiredoxin 22.6 4.5E+02 0.0097 21.8 8.4 60 302-365 87-153 (203)
465 PF09345 DUF1987: Domain of un 22.6 3.1E+02 0.0067 19.9 7.0 40 273-312 49-88 (99)
466 PF11090 DUF2833: Protein of u 22.4 1.5E+02 0.0032 20.9 3.4 28 295-322 51-79 (86)
467 PHA02151 hypothetical protein 22.4 50 0.0011 25.9 1.3 16 58-73 201-216 (217)
468 PRK10853 putative reductase; P 22.2 1E+02 0.0022 23.1 3.0 20 64-83 2-21 (118)
469 COG1307 DegV Uncharacterized p 21.9 2.9E+02 0.0062 24.6 6.1 39 102-142 10-49 (282)
470 cd03015 PRX_Typ2cys Peroxiredo 21.8 2.6E+02 0.0056 22.4 5.5 52 199-250 95-156 (173)
471 PRK13165 cytochrome c-type bio 21.4 1.1E+02 0.0024 24.4 3.1 20 1-20 1-20 (160)
472 PRK00522 tpx lipid hydroperoxi 21.3 4.3E+02 0.0092 21.0 8.9 49 314-363 111-166 (167)
473 TIGR01616 nitro_assoc nitrogen 21.2 1.4E+02 0.003 22.8 3.5 20 64-83 3-22 (126)
474 PF09494 Slx4: Slx4 endonuclea 20.8 1.7E+02 0.0038 19.1 3.5 36 236-271 23-58 (64)
475 PRK10026 arsenate reductase; P 20.6 1.3E+02 0.0028 23.5 3.3 20 64-83 4-23 (141)
476 PRK10540 lipoprotein; Provisio 20.3 1E+02 0.0022 20.9 2.2 6 1-6 1-6 (72)
477 cd03056 GST_N_4 GST_N family, 20.0 2.6E+02 0.0056 18.0 6.0 52 65-123 2-57 (73)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-45 Score=330.58 Aligned_cols=326 Identities=29% Similarity=0.483 Sum_probs=277.4
Q ss_pred CCCCCEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCC
Q 017126 40 KIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP 119 (377)
Q Consensus 40 ~~~~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 119 (377)
..+..|+.|+..||+..+..+..++|.||||||+||+++.|+|.++|..+.+.++.+.+++|||+.+.++|.+|+|++||
T Consensus 22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred CcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 45789999999999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred EEEEEeCCee-EeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHccCCcccEEEeecCC----hHHHHHHHHHhh
Q 017126 120 TLKIFMHGIP-TEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD----ESVMSNLALKYK 194 (377)
Q Consensus 120 ~~~~~~~g~~-~~y~g~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~a~~~~ 194 (377)
|+.+|++|.. ..|.|+|++++|+.|++++.+|++..+.+..+++.++.+.+ +++++|+.+ ...+...|..++
T Consensus 102 TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~---~~vig~F~d~~~~~~~~~~~a~~l~ 178 (493)
T KOG0190|consen 102 TLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKD---VVVIGFFKDLESLAESFFDAASKLR 178 (493)
T ss_pred eEEEEecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCc---eEEEEEecccccchHHHHHHHHhcc
Confidence 9999999985 78999999999999999999999999999999999998854 488888754 246778888888
Q ss_pred hhhHHHHhhcchhhhhhhcCCCC--CCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhCCCcccccChhhHHhhhcCCCc
Q 017126 195 KKAWFAVAKDFSEDTMVLYDFDK--VPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRK 272 (377)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~v~~--~P~l~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~l~~~~~~~~~~~~~~ 272 (377)
+...|+ +..+.++++.++... .+.+++.++.+.....|.|.++.+.|..||..++.|++.++|.++...+.....+
T Consensus 179 ~d~~F~--~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~ 256 (493)
T KOG0190|consen 179 DDYKFA--HTSDSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVK 256 (493)
T ss_pred ccceee--ccCcHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecccccceeeccccc
Confidence 888877 345688888887763 3448888887777778889999999999999999999999999888777666555
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCC-eEEEEeCCCCceeccCCCCCC
Q 017126 273 IVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP-KMVVWDGNENYLTVIGSESID 350 (377)
Q Consensus 273 ~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P-~l~i~~~~~~~~~~~~~~~~~ 350 (377)
.-+.++........+.+++.++.+|+++++ ++|+++|..++...++.||+ .....| .+++.+.++..+.+. .
T Consensus 257 ~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~~~~~~~~~Gl-~~~~~~~~~v~~~~~~~Ky~~~-----~ 330 (493)
T KOG0190|consen 257 LGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPESFARVLEFFGL-EEEQLPIRAVILNEDGSKYPLE-----E 330 (493)
T ss_pred cceeEEeccccccHHHHHHHHHHHHHhcccceEEEEEChHHhhHHHHhcCc-ccccCCeeEEeeccccccccCc-----c
Confidence 555555444444667889999999999998 99999999999999999999 556666 444444443333332 4
Q ss_pred cccchhhHHHHHHHHhcCccccccCC
Q 017126 351 EEDQGSQISRFLEGYREGRTEQKKNS 376 (377)
Q Consensus 351 ~~~t~e~i~~Fi~~~~~Gkl~~~~~~ 376 (377)
++.+.++|..|+.+|++|+++|+..|
T Consensus 331 e~~~~~~ie~f~~~~l~Gk~~p~~kS 356 (493)
T KOG0190|consen 331 EELDQENIESFVKDFLDGKVKPHLKS 356 (493)
T ss_pred ccccHHHHHHHHHHHhcCcccccccc
Confidence 55778899999999999999999766
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=7.7e-40 Score=312.71 Aligned_cols=311 Identities=29% Similarity=0.436 Sum_probs=251.6
Q ss_pred CCCEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEE
Q 017126 42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (377)
Q Consensus 42 ~~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~ 121 (377)
...+..|+.++|+..++++++++|.||++||++|+++.|.|.++++.+++...++.++.|||+++.++|++++|.++|++
T Consensus 31 ~~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~ 110 (477)
T PTZ00102 31 SEHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTI 110 (477)
T ss_pred CCCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEE
Confidence 36899999999999999899999999999999999999999999999877666799999999999999999999999999
Q ss_pred EEEeCCeeEeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHccCCcccEEEeecC-Ch----HHHHHHHHHhhhh
Q 017126 122 KIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGL-DE----SVMSNLALKYKKK 196 (377)
Q Consensus 122 ~~~~~g~~~~y~g~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~----~~~~~~a~~~~~~ 196 (377)
++|++|..+.|.|.++.+.|.+|+.+.+.+++..+.+..++..+..... +.+++++. .+ ..|.++|..++..
T Consensus 111 ~~~~~g~~~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~f~~~a~~~~~~ 187 (477)
T PTZ00102 111 KFFNKGNPVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIF---VAFYGEYTSKDSELYKKFEEVADKHREH 187 (477)
T ss_pred EEEECCceEEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCc---EEEEEEeccCCcHHHHHHHHHHHhcccc
Confidence 9999998889999999999999999999999999999877765443322 45665543 22 3577778877766
Q ss_pred hHHHHhhcchhhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhCCCcccccChhhHHhhhcCCCcEEEE
Q 017126 197 AWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA 276 (377)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~l~~~~~~~~~~~~~~~~i~ 276 (377)
..|.... +. ..+.+.+++..+ ....+.+..+.++|.+||..+.+|.+.+++.+++..+...+.+.+++
T Consensus 188 ~~F~~~~----------~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~~~~ 255 (477)
T PTZ00102 188 AKFFVKK----------HE-GKNKIYVLHKDE-EGVELFMGKTKEELEEFVSTESFPLFAEINAENYRRYISSGKDLVWF 255 (477)
T ss_pred ceEEEEc----------CC-CCCcEEEEecCC-CCcccCCCCCHHHHHHHHHHcCCCceeecCccchHHHhcCCccEEEE
Confidence 5554321 11 246778887643 33344344588999999999999999999999999888777766544
Q ss_pred EEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhh-HHhhcCCCCCCCCCeEEEEeCCCCceeccCCCCCCcccc
Q 017126 277 IVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFAD-FADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQ 354 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~-~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t 354 (377)
+. .....+++.+.++++|+++++ +.|+++|+.+++. +++.+|+ ..+|++++.+.+++|.+..+.. +.+|
T Consensus 256 ~~---~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~~~~~~~~~gi---~~~P~~~i~~~~~~y~~~~~~~---~~~~ 326 (477)
T PTZ00102 256 CG---TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQFGSHAKEHLLI---EEFPGLAYQSPAGRYLLPPAKE---SFDS 326 (477)
T ss_pred ec---CHHHHHHHHHHHHHHHHhccCceEEEEEechhcchhHHHhcCc---ccCceEEEEcCCcccCCCcccc---ccCC
Confidence 32 234456788999999999998 9999999999886 8899999 4589999988777776543211 2367
Q ss_pred hhhHHHHHHHHhcCccccccCC
Q 017126 355 GSQISRFLEGYREGRTEQKKNS 376 (377)
Q Consensus 355 ~e~i~~Fi~~~~~Gkl~~~~~~ 376 (377)
.+.|.+|++++++|+++|...|
T Consensus 327 ~~~l~~Fv~~~~~gk~~~~~~s 348 (477)
T PTZ00102 327 VEALIEFFKDVEAGKVEKSIKS 348 (477)
T ss_pred HHHHHHHHHHHhCCCCCccccc
Confidence 8999999999999999987543
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=2.1e-39 Score=309.08 Aligned_cols=321 Identities=30% Similarity=0.493 Sum_probs=264.4
Q ss_pred CCEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEE
Q 017126 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (377)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~ 122 (377)
++|+.|++++|+++++++++++|.|||+||++|+++.|.|.++++.+++.+..+.++.|||++++++|++++|.++|+++
T Consensus 1 ~~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 80 (462)
T TIGR01130 1 EDVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLK 80 (462)
T ss_pred CCceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEE
Confidence 36889999999999999999999999999999999999999999999876667999999999999999999999999999
Q ss_pred EEeCCee--EeecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHccCCcccEEEeecCC-----hHHHHHHHHHhhh
Q 017126 123 IFMHGIP--TEYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD-----ESVMSNLALKYKK 195 (377)
Q Consensus 123 ~~~~g~~--~~y~g~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~a~~~~~ 195 (377)
+|++|+. ..|.|.++.+.|.+|+.+.+++.+..+++.++++.++...+. .+|+|+.+ ...+.++|..+..
T Consensus 81 ~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~---~vi~~~~~~~~~~~~~~~~~a~~~~~ 157 (462)
T TIGR01130 81 IFRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDV---VVIGFFKDLDSELNDTFLSVAEKLRD 157 (462)
T ss_pred EEeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCc---EEEEEECCCCcHHHHHHHHHHHHhhh
Confidence 9999986 579999999999999999999999999999999999988543 56665543 2468888888877
Q ss_pred hhHHHHhhcchhhhhhhcCCCCCCeEEEEcCCCCCc--ccccCCC--CHHHHHHHHHhhCCCcccccChhhHHhhhcCCC
Q 017126 196 KAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEH--NIFYGPF--DEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKR 271 (377)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~v~~~P~l~~~~~~~~~~--~~~~g~~--~~~~l~~fi~~~~~p~~~~l~~~~~~~~~~~~~ 271 (377)
...+ ++...+..+...++.. .+.+++++...... ..|.|+. +.++|.+||..+..|.+++++.+++..+...+
T Consensus 158 ~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~- 234 (462)
T TIGR01130 158 VYFF-FAHSSDVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG- 234 (462)
T ss_pred ccce-EEecCCHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-
Confidence 6553 2322345666777765 47777777654433 3677765 46899999999999999999999998888776
Q ss_pred cEEEEEEe-CCChHHHHHHHHHHHHHHHhCCC--cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCC--CceeccCC
Q 017126 272 KIVLAIVE-DETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE--NYLTVIGS 346 (377)
Q Consensus 272 ~~~i~~~~-~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~--~~~~~~~~ 346 (377)
|.+++++. +.+....+++.+.++++|+++++ +.|+++|+.+++.+++.+|+ ...++|++++++.++ +|.+ .
T Consensus 235 ~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~~~~~~~~~~~-~~~~~P~~vi~~~~~~~~y~~-~-- 310 (462)
T TIGR01130 235 PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEEDFGRELEYFGL-KAEKFPAVAIQDLEGNKKYPM-D-- 310 (462)
T ss_pred CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHHhHHHHHHcCC-CccCCceEEEEeCCcccccCC-C--
Confidence 55555543 22333357888999999999984 99999999999999999999 556899999999875 3432 2
Q ss_pred CCCCcccchhhHHHHHHHHhcCccccccCC
Q 017126 347 ESIDEEDQGSQISRFLEGYREGRTEQKKNS 376 (377)
Q Consensus 347 ~~~~~~~t~e~i~~Fi~~~~~Gkl~~~~~~ 376 (377)
.++++.++|.+|++++++|+++|...|
T Consensus 311 ---~~~~~~~~i~~fi~~~~~g~~~~~~~s 337 (462)
T TIGR01130 311 ---QEEFSSENLEAFVKDFLDGKLKPYLKS 337 (462)
T ss_pred ---cCCCCHHHHHHHHHHHhcCCCCeeecc
Confidence 226789999999999999999987644
No 4
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=100.00 E-value=2.1e-37 Score=257.07 Aligned_cols=313 Identities=20% Similarity=0.343 Sum_probs=250.4
Q ss_pred eChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCC--CCeEEEEEeCCcchhhHhhcCCCcCCEEEEEe
Q 017126 48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLK--EPIVIAKVDADKYSRLASKQEIDAFPTLKIFM 125 (377)
Q Consensus 48 l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~--~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 125 (377)
|+..|++.++..+..+||.|||+||+.++.+.|.|.++|..+++.. .++.+|.|||+.+..++.+|.|..|||+.+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 4668899999999999999999999999999999999999998754 37999999999999999999999999999999
Q ss_pred CCeeE--eecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHccCCcccEEEeecCC--h---HHHHHHHHHhhhhhH
Q 017126 126 HGIPT--EYYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAW 198 (377)
Q Consensus 126 ~g~~~--~y~g~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~--~---~~~~~~a~~~~~~~~ 198 (377)
+|... +|+|.|+++.+.+|+++++..++.++.+..+++....... ..+|+++.. . ..++.+|..+++.+.
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K---~~vIgyF~~kdspey~~~~kva~~lr~dc~ 157 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSK---RTVIGYFPSKDSPEYDNLRKVASLLRDDCV 157 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhcccc---ceEEEEeccCCCchHHHHHHHHHHHhhccE
Confidence 99876 4999999999999999999999888887766665554333 377887752 2 358888999999887
Q ss_pred HHHhhcchhhhhhhcCCCCCCeEEEEcCCCCCc-ccccCCCC-HHHHHHHHHhhCCCcccccChhhHHhhhcCCCcEEEE
Q 017126 199 FAVAKDFSEDTMVLYDFDKVPALVALQPSYNEH-NIFYGPFD-EEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA 276 (377)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~P~l~~~~~~~~~~-~~~~g~~~-~~~l~~fi~~~~~p~~~~l~~~~~~~~~~~~~~~~i~ 276 (377)
|.+.- .+... ...-.+.+ +++++++.... ..|.|.++ .+++..||.+...|+|+++|.+|.+.+...+.|.+++
T Consensus 158 f~V~~--gD~~~-~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflIL 233 (375)
T KOG0912|consen 158 FLVGF--GDLLK-PHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLIL 233 (375)
T ss_pred EEeec--ccccc-CCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEE
Confidence 76552 11111 11112222 56677643333 36999876 7999999999999999999999999999999999999
Q ss_pred EEeCCChHHHHHHHHHHHHHHHhCC-CcEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCCCceeccCCCCCCcccch
Q 017126 277 IVEDETEEKSQKLVTTLKAAASANR-ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQG 355 (377)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~a~~~~-~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~ 355 (377)
|....+....+.+...+.+--..-+ .+.|...||..+..-+..+|- +..++|.++|-...+-|-++. +++-..+
T Consensus 234 f~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgK-s~~DLPviaIDsF~Hmylfp~----f~di~~p 308 (375)
T KOG0912|consen 234 FRKKDDKESEKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGK-SPDDLPVIAIDSFRHMYLFPD----FNDINIP 308 (375)
T ss_pred EecCCcccHHHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCC-CcccCcEEEeeccceeeecCc----hhhhcCc
Confidence 9876665555555544433222222 399999999999999999999 899999999999988776654 2333456
Q ss_pred hhHHHHHHHHhcCcccc
Q 017126 356 SQISRFLEGYREGRTEQ 372 (377)
Q Consensus 356 e~i~~Fi~~~~~Gkl~~ 372 (377)
..|.+|+.|..|||+..
T Consensus 309 GkLkqFv~DL~sgklHr 325 (375)
T KOG0912|consen 309 GKLKQFVADLHSGKLHR 325 (375)
T ss_pred cHHHHHHHHHhCchhhH
Confidence 79999999999999854
No 5
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=100.00 E-value=1.1e-36 Score=252.55 Aligned_cols=312 Identities=23% Similarity=0.400 Sum_probs=235.0
Q ss_pred CCEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEE
Q 017126 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (377)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~ 122 (377)
..|.+|+++-.+. +..+.|+|.||+|||+||++++|.|.++.-+++..+.++.+++.||+..+.++.+++|+||||+.
T Consensus 28 t~VeDLddkFkdn--kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk 105 (468)
T KOG4277|consen 28 TAVEDLDDKFKDN--KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIK 105 (468)
T ss_pred hhhhhhhHHhhhc--ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEE
Confidence 4677777654333 45689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCeeEeecCCCCHHHHHHHHHhhcCCCceecCChH-HHHHHHHccCCcccEEEeec-CChH---HHHHHHHHhhhhh
Q 017126 123 IFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDA-EVSDFVENAGTFFPLFIGFG-LDES---VMSNLALKYKKKA 197 (377)
Q Consensus 123 ~~~~g~~~~y~g~~~~~~i~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~v~~~-~~~~---~~~~~a~~~~~~~ 197 (377)
+|++|-.+.|+|+++.+.|++|..+...+-+.+|.+.+ ++..+...++ |.+|.+. ...+ .|...|.+.....
T Consensus 106 ~~kgd~a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq---~ffVf~Gtge~PL~d~fidAASe~~~~a 182 (468)
T KOG4277|consen 106 FFKGDHAIDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQ---PFFVFFGTGEGPLFDAFIDAASEKFSVA 182 (468)
T ss_pred EecCCeeeecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccC---ceEEEEeCCCCcHHHHHHHHhhhheeee
Confidence 99999999999999999999999999999888887633 3334444444 4666665 2333 4555555444444
Q ss_pred HHHHhhcchhhhhhhcC-CCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhCCCcccccChhhHHhhhcCCCcEEEE
Q 017126 198 WFAVAKDFSEDTMVLYD-FDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLA 276 (377)
Q Consensus 198 ~~~~~~~~~~~~~~~~~-v~~~P~l~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~l~~~~~~~~~~~~~~~~i~ 276 (377)
.|..+ +++++..++ .+..|.+.+|+. +......+.+.++|.+||...++|.+-..+..++..+...++.++++
T Consensus 183 ~FfSa---seeVaPe~~~~kempaV~VFKD---etf~i~de~dd~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLa 256 (468)
T KOG4277|consen 183 RFFSA---SEEVAPEENDAKEMPAVAVFKD---ETFEIEDEGDDEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALA 256 (468)
T ss_pred eeecc---ccccCCcccchhhccceEEEcc---ceeEEEecCchhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEE
Confidence 44333 355554443 335799999984 33333444566789999999999999999999999999998888888
Q ss_pred EEeCC----ChHHHHHHHHHHHHHHHhCCC-------cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCC-CCceecc
Q 017126 277 IVEDE----TEEKSQKLVTTLKAAASANRE-------LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN-ENYLTVI 344 (377)
Q Consensus 277 ~~~~~----~~~~~~~~~~~l~~~a~~~~~-------~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~-~~~~~~~ 344 (377)
+.+.+ ......++.++.+++|+++++ ++|+|+|+++. ++++-+ ..-..|.++|+|.+ ..|+...
T Consensus 257 VidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~---~nqilM-~als~P~l~i~NtsnqeYfLse 332 (468)
T KOG4277|consen 257 VIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDL---ANQILM-AALSEPHLFIFNTSNQEYFLSE 332 (468)
T ss_pred EeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHH---HHHHHH-HhhcCCeEEEEecCchheeecc
Confidence 87643 345557788888888887553 89999999764 444333 23557999999996 5665544
Q ss_pred CCCCCCcccchhhHHHHHHH----HhcCcccc
Q 017126 345 GSESIDEEDQGSQISRFLEG----YREGRTEQ 372 (377)
Q Consensus 345 ~~~~~~~~~t~e~i~~Fi~~----~~~Gkl~~ 372 (377)
+...+ .|.+++-+||++ +..|.+..
T Consensus 333 ~d~qi---kniedilqFientsegI~d~TieA 361 (468)
T KOG4277|consen 333 DDPQI---KNIEDILQFIENTSEGIDDETIEA 361 (468)
T ss_pred CChhh---hhHHHHHHHHhcccccccccceee
Confidence 33333 477889999999 55555443
No 6
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=100.00 E-value=3.1e-34 Score=243.41 Aligned_cols=351 Identities=22% Similarity=0.337 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCCccccccCCCCCEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhH-------HHH
Q 017126 9 IWILLCLLLLTGRGMMLLTGRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRL-------APQ 81 (377)
Q Consensus 9 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~-------~~~ 81 (377)
.++++++++|+++....+...++..|+ ++...+|++||.+||.+++++.+..+|+||.|--. .+.. +-.
T Consensus 3 ~~l~la~l~L~~~~~~~~aeegLefP~---YDGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~-dk~~qkq~~m~E~~ 78 (383)
T PF01216_consen 3 TWLLLAGLYLSVLGCCCRAEEGLEFPE---YDGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVES-DKVSQKQFQMTELV 78 (383)
T ss_dssp -----------------------SSSS----SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STS-SHHHHHHHHHHHHH
T ss_pred ceeeHHHHHHHHhccccchhhccCCcc---CCCccceEEcchhHHHHHHHhhcEEEEEEecCCcc-CHHHHHHHHHHHHH
Confidence 344555555554444455556666664 77889999999999999999999999999988632 2222 223
Q ss_pred HHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCeeEeecCCCCHHHHHHHHHhhcCCCceecCChHH
Q 017126 82 LDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSILNSDAE 161 (377)
Q Consensus 82 ~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~i~~~~~~~~~~~~~~i~~~~~ 161 (377)
++-+|+.+... .+.||.||..++..+++++|+...+++++|++|..+.|.|.++++.+++|+...+..+|..|++..+
T Consensus 79 LELaAQVlE~~--gigfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e 156 (383)
T PF01216_consen 79 LELAAQVLEDK--GIGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHE 156 (383)
T ss_dssp HHHHHHHCGGC--TEEEEEEETTTTHHHHHHHT--STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHH
T ss_pred HHHHHHhcccc--CcceEEeccHHHHHHHHhcCccccCcEEEEECCcEEEecCccCHHHHHHHHHHhcccchhhhcChhh
Confidence 44556666543 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCcccEEEeecCCh-----HHHHHHHHHhhhhhHHHHhhcchhhhhhhcCCCCCCeEEEEcCCCCCcccccC
Q 017126 162 VSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYG 236 (377)
Q Consensus 162 ~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~g 236 (377)
++.|-.-... +.+|||++.. ..|..+|..|+....|..+ ++..++++++++ ...+-+|++-.+++....|
T Consensus 157 ~~~Fe~ied~--~klIGyFk~~~s~~yk~FeeAAe~F~p~IkFfAt--fd~~vAk~L~lK-~nev~fyepF~~~pi~ip~ 231 (383)
T PF01216_consen 157 LKAFERIEDD--IKLIGYFKSEDSEHYKEFEEAAEHFQPYIKFFAT--FDKKVAKKLGLK-LNEVDFYEPFMDEPITIPG 231 (383)
T ss_dssp HHHHHH--SS---EEEEE-SSTTSHHHHHHHHHHHHCTTTSEEEEE---SHHHHHHHT-S-TT-EEEE-TTSSSEEEESS
T ss_pred hhhhhhcccc--eeEEEEeCCCCcHHHHHHHHHHHhhcCceeEEEE--ecchhhhhcCcc-ccceeeeccccCCCccCCC
Confidence 9888775543 6899988664 2578889999988777766 679999999997 8889999998888888876
Q ss_pred C-CCHHHHHHHHHhhCCCcccccChhhH-HhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC---cEEEEEecc
Q 017126 237 P-FDEEFLEEFIKQNFLPLSVPINQDTL-NLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIK 311 (377)
Q Consensus 237 ~-~~~~~l~~fi~~~~~p~~~~l~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~ 311 (377)
+ .+..+|.+||+.|..|.++++++++. +...+.-.-..++.|...+++.-.+++++|+++|+...+ +.++|+|..
T Consensus 232 ~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD 311 (383)
T PF01216_consen 232 KPYTEEELVEFIEEHKRPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPD 311 (383)
T ss_dssp SS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GG
T ss_pred CCCCHHHHHHHHHHhchhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCC
Confidence 5 56789999999999999999999775 444444344555555556778888999999999998775 999999999
Q ss_pred chhh----HHhhcCCCCCCCCCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHhcCcccc
Q 017126 312 QFAD----FADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 372 (377)
Q Consensus 312 ~~~~----~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~Gkl~~ 372 (377)
++|- +-+.|||+ -..|++.+++.+..-..+-+-..-.+..|.+.++.||.++++|++.+
T Consensus 312 ~fPllv~yWE~tF~Id--l~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 312 DFPLLVPYWEKTFGID--LSRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp G-HHHHHHHHHHHTT---TTS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred CCchhHHHHHhhcCcc--ccCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence 9855 55789994 44699999999743333322222235579999999999999999865
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.91 E-value=7.6e-24 Score=158.75 Aligned_cols=103 Identities=17% Similarity=0.387 Sum_probs=93.7
Q ss_pred CCCCCEEEeChhhHHHH---HcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhH-hhcCC
Q 017126 40 KIDGKVIELDESNFDSA---ISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA-SKQEI 115 (377)
Q Consensus 40 ~~~~~v~~l~~~~f~~~---~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~-~~~~i 115 (377)
..+++|++|++++|+++ ++++++++|.||||||++|+.+.|.|+++++.+++ .+.|++|||++++++| ++|+|
T Consensus 6 ~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~---~v~~~~Vd~d~~~~l~~~~~~I 82 (113)
T cd03006 6 SQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD---QVLFVAINCWWPQGKCRKQKHF 82 (113)
T ss_pred CCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEECCCChHHHHHhcCC
Confidence 44689999999999987 58889999999999999999999999999999864 3999999999999999 58999
Q ss_pred CcCCEEEEEeCCee-EeecCCCCHHHHHHHH
Q 017126 116 DAFPTLKIFMHGIP-TEYYGPRKAELLVRYL 145 (377)
Q Consensus 116 ~~~P~~~~~~~g~~-~~y~g~~~~~~i~~~~ 145 (377)
.++||+++|++|+. ..|.|.++.+.|..|+
T Consensus 83 ~~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 83 FYFPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 99999999999864 5699999999999874
No 8
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.90 E-value=5.6e-23 Score=153.20 Aligned_cols=99 Identities=34% Similarity=0.683 Sum_probs=92.0
Q ss_pred CEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEE
Q 017126 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (377)
Q Consensus 44 ~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~ 123 (377)
++++|+.++|++.++++++++|.||++||++|+.+.|.|.++++.+++ .+.|+.|||++++++|++++|.++||+++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG---VIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC---ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 688999999999998889999999999999999999999999999865 39999999999999999999999999999
Q ss_pred EeCCeeE-eecCCCCHHHHHHHH
Q 017126 124 FMHGIPT-EYYGPRKAELLVRYL 145 (377)
Q Consensus 124 ~~~g~~~-~y~g~~~~~~i~~~~ 145 (377)
|++|+.. .|.|.++.+.|.+|+
T Consensus 79 ~~~g~~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 79 FPSGMNPEKYYGDRSKESLVKFA 101 (101)
T ss_pred EcCCCCcccCCCCCCHHHHHhhC
Confidence 9999765 499999999998873
No 9
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.89 E-value=2.6e-22 Score=151.47 Aligned_cols=103 Identities=36% Similarity=0.671 Sum_probs=93.4
Q ss_pred CCEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCC---CCeEEEEEeCCcchhhHhhcCCCcCC
Q 017126 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLK---EPIVIAKVDADKYSRLASKQEIDAFP 119 (377)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~---~~v~~~~vd~~~~~~~~~~~~i~~~P 119 (377)
++++.|++++|++.++.+++++|.||+|||++|+.+.|.|.++++.+++.. ..+.++.|||++++++|++|+|.++|
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 1 SEIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred CceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 368899999999999888999999999999999999999999999886432 24999999999999999999999999
Q ss_pred EEEEEeCCee--EeecCCCCHHHHHHHH
Q 017126 120 TLKIFMHGIP--TEYYGPRKAELLVRYL 145 (377)
Q Consensus 120 ~~~~~~~g~~--~~y~g~~~~~~i~~~~ 145 (377)
++++|++|+. ..|.|.++.+.|.+|+
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999999983 4599999999999985
No 10
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.88 E-value=1.1e-21 Score=147.10 Aligned_cols=101 Identities=37% Similarity=0.679 Sum_probs=95.1
Q ss_pred EEEeChhhHHHHHcC-CCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEE
Q 017126 45 VIELDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (377)
Q Consensus 45 v~~l~~~~f~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~ 123 (377)
|..+|+++|++.+.+ +++++|+||++||++|+.+.|.|.++++.+.+ ++.++.|||++++.+|++|+|.++|++++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDENKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTSHHHHHHTTCSSSSEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhccchhhhccCCCCCCEEEE
Confidence 578999999999976 89999999999999999999999999999875 59999999999999999999999999999
Q ss_pred EeCCeeE-eecCCCCHHHHHHHHHhh
Q 017126 124 FMHGIPT-EYYGPRKAELLVRYLKKF 148 (377)
Q Consensus 124 ~~~g~~~-~y~g~~~~~~i~~~~~~~ 148 (377)
|++|+.. .|.|.++.+.|.+|++++
T Consensus 78 ~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 78 FKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999877 599999999999999875
No 11
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.87 E-value=1.6e-21 Score=147.04 Aligned_cols=110 Identities=22% Similarity=0.300 Sum_probs=94.1
Q ss_pred cCCCCCEEEeChhhHHHHHcCC-CeEEEEEECCCChh--Hh--hHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhc
Q 017126 39 FKIDGKVIELDESNFDSAISSF-DYILVDFYAPWCGH--CK--RLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ 113 (377)
Q Consensus 39 ~~~~~~v~~l~~~~f~~~~~~~-~~~~v~f~~~~C~~--C~--~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~ 113 (377)
++..++|+.||++||++.+.++ .++++.|+++||++ |+ +..|.+.++|.++-+. .++.|++|||++++++|++|
T Consensus 5 ~~~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~-~~v~~~kVD~d~~~~La~~~ 83 (120)
T cd03065 5 YDGKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED-KGIGFGLVDSKKDAKVAKKL 83 (120)
T ss_pred cCCCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc-CCCEEEEEeCCCCHHHHHHc
Confidence 4556799999999999988555 57777788888865 99 7888888887776221 24999999999999999999
Q ss_pred CCCcCCEEEEEeCCeeEeecCCCCHHHHHHHHHhhc
Q 017126 114 EIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFV 149 (377)
Q Consensus 114 ~i~~~P~~~~~~~g~~~~y~g~~~~~~i~~~~~~~~ 149 (377)
+|+++||+++|++|+.+.|.|.++.+.|.+|+.+..
T Consensus 84 ~I~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 84 GLDEEDSIYVFKDDEVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred CCccccEEEEEECCEEEEeeCCCCHHHHHHHHHHHh
Confidence 999999999999999888999999999999998764
No 12
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.87 E-value=8.4e-22 Score=146.39 Aligned_cols=98 Identities=29% Similarity=0.508 Sum_probs=87.8
Q ss_pred CEEEeChhhHHHHHcCCCeEEEEEEC--CCCh---hHhhHHHHHHHHHHHhhcCCCCeEEEEEeC-----CcchhhHhhc
Q 017126 44 KVIELDESNFDSAISSFDYILVDFYA--PWCG---HCKRLAPQLDEAAPILAKLKEPIVIAKVDA-----DKYSRLASKQ 113 (377)
Q Consensus 44 ~v~~l~~~~f~~~~~~~~~~~v~f~~--~~C~---~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~-----~~~~~~~~~~ 113 (377)
.+++||+.||++.|++++.+||.||+ |||+ +|+.++|++.+.+. .+.+++||| .++.+||++|
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-------~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-------DLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-------ceEEEEEecccccchhhHHHHHHh
Confidence 57899999999999999999999999 9999 88888888877664 288999999 5688999999
Q ss_pred CCC--cCCEEEEEeCCe---eEeecCC-CCHHHHHHHHHhh
Q 017126 114 EID--AFPTLKIFMHGI---PTEYYGP-RKAELLVRYLKKF 148 (377)
Q Consensus 114 ~i~--~~P~~~~~~~g~---~~~y~g~-~~~~~i~~~~~~~ 148 (377)
+|+ +||||++|++|. ++.|.|. ++++.|++|+.++
T Consensus 75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999 999999999984 5679997 9999999999875
No 13
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.87 E-value=9.1e-21 Score=157.84 Aligned_cols=172 Identities=24% Similarity=0.433 Sum_probs=149.4
Q ss_pred HHHHHHHHHhhhhhHHHHhhcchhhhhhhcCCCCCCeEEEEcCCCCCcccccCC-CCHHHHHHHHHhhCCCcccccChhh
Q 017126 184 SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGP-FDEEFLEEFIKQNFLPLSVPINQDT 262 (377)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~g~-~~~~~l~~fi~~~~~p~~~~l~~~~ 262 (377)
..|.++|..+++...|+.. .+.++++.+++.. |++++|++.++....|.|. ++.++|.+||..+++|++.++++++
T Consensus 10 ~~f~~~A~~~~~~~~F~~~--~~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~~t~~n 86 (184)
T PF13848_consen 10 EIFEEAAEKLKGDYQFGVT--FNEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPELTPEN 86 (184)
T ss_dssp HHHHHHHHHHTTTSEEEEE--E-HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEEESTTH
T ss_pred HHHHHHHHhCcCCcEEEEE--cHHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccccchhh
Confidence 4688899999988777666 4688999999997 9999999877778899998 8999999999999999999999999
Q ss_pred HHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCC-CCc
Q 017126 263 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN-ENY 340 (377)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~-~~~ 340 (377)
+..+...+.+.+++++...+....+.+.+.++.+|+++++ +.|+|+|+..++++++.+|+ ...++|+++|++.. ++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i-~~~~~P~~vi~~~~~~~~ 165 (184)
T PF13848_consen 87 FEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGI-DEDDLPALVIFDSNKGKY 165 (184)
T ss_dssp HHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTT-TTSSSSEEEEEETTTSEE
T ss_pred HHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCC-CCccCCEEEEEECCCCcE
Confidence 9999999888666666666778889999999999999999 99999999988999999999 67899999999975 555
Q ss_pred eeccCCCCCCcccchhhHHHHHHH
Q 017126 341 LTVIGSESIDEEDQGSQISRFLEG 364 (377)
Q Consensus 341 ~~~~~~~~~~~~~t~e~i~~Fi~~ 364 (377)
+++. .+++|.++|.+|+++
T Consensus 166 ~~~~-----~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 166 YYLP-----EGEITPESIEKFLND 184 (184)
T ss_dssp EE-------SSCGCHHHHHHHHHH
T ss_pred EcCC-----CCCCCHHHHHHHhcC
Confidence 5442 567899999999986
No 14
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.87 E-value=4e-21 Score=160.99 Aligned_cols=106 Identities=30% Similarity=0.574 Sum_probs=96.3
Q ss_pred CCCEEEeChhhHHHHHcC-----CCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCC
Q 017126 42 DGKVIELDESNFDSAISS-----FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID 116 (377)
Q Consensus 42 ~~~v~~l~~~~f~~~~~~-----~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~ 116 (377)
++.+++||+++|++.+.. .++++|+||+|||++|+.+.|.|+++++.+++ .+.++.+||++++++|++|+|.
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~---~v~~~~VD~~~~~~l~~~~~I~ 105 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG---QVNVADLDATRALNLAKRFAIK 105 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC---CeEEEEecCcccHHHHHHcCCC
Confidence 468999999999998843 47999999999999999999999999998864 4999999999999999999999
Q ss_pred cCCEEEEEeCCeeEee-cCCCCHHHHHHHHHhhcC
Q 017126 117 AFPTLKIFMHGIPTEY-YGPRKAELLVRYLKKFVA 150 (377)
Q Consensus 117 ~~P~~~~~~~g~~~~y-~g~~~~~~i~~~~~~~~~ 150 (377)
++|++++|.+|+.+.| .|.++.+.|.+|+.+...
T Consensus 106 ~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 106 GYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred cCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 9999999999998875 677999999999987764
No 15
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.87 E-value=1.4e-21 Score=146.54 Aligned_cols=99 Identities=33% Similarity=0.695 Sum_probs=89.4
Q ss_pred CEEEeChhhHHHHH-cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEE
Q 017126 44 KVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (377)
Q Consensus 44 ~v~~l~~~~f~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~ 122 (377)
+++.|+.++|++.+ +.+++++|.||++||++|+.+.|.|.++++.+.+ .+.++.|||++++++|++++|.++|+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG---KVKVGSVDCQKYESLCQQANIRAYPTIR 78 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEECCchHHHHHHcCCCcccEEE
Confidence 67889999999987 5567999999999999999999999999998854 4999999999999999999999999999
Q ss_pred EEeCC-eeE-eecCCCC-HHHHHHHH
Q 017126 123 IFMHG-IPT-EYYGPRK-AELLVRYL 145 (377)
Q Consensus 123 ~~~~g-~~~-~y~g~~~-~~~i~~~~ 145 (377)
+|.+| +.. .|.|..+ .++|.+|+
T Consensus 79 ~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 79 LYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEcCCCCCceEccCCCCCHHHHHhhC
Confidence 99997 554 5999987 99998885
No 16
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.87 E-value=2.7e-21 Score=144.20 Aligned_cols=101 Identities=32% Similarity=0.629 Sum_probs=91.0
Q ss_pred CCEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEE
Q 017126 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (377)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~ 122 (377)
++|++|+.++|++.++. . ++|.||++||++|+.+.|.|.++++..+. ..+.++.|||++++.+|++|+|.++|+++
T Consensus 1 ~~v~~l~~~~f~~~~~~-~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 1 SNVVELTDSNWTLVLEG-E-WMIEFYAPWCPACQQLQPEWEEFADWSDD--LGINVAKVDVTQEPGLSGRFFVTALPTIY 76 (101)
T ss_pred CceEEcChhhHHHHhCC-C-EEEEEECCCCHHHHHHhHHHHHHHHhhcc--CCeEEEEEEccCCHhHHHHcCCcccCEEE
Confidence 36899999999998854 3 89999999999999999999999987653 34999999999999999999999999999
Q ss_pred EEeCCeeEeecCCCCHHHHHHHHHh
Q 017126 123 IFMHGIPTEYYGPRKAELLVRYLKK 147 (377)
Q Consensus 123 ~~~~g~~~~y~g~~~~~~i~~~~~~ 147 (377)
+|++|+...|.|.++.+.|.+|+++
T Consensus 77 ~~~~g~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 77 HAKDGVFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EeCCCCEEEecCCCCHHHHHHHHhC
Confidence 9999987679999999999999864
No 17
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3e-20 Score=171.53 Aligned_cols=206 Identities=31% Similarity=0.476 Sum_probs=156.5
Q ss_pred CCEEEeCh-hhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEE
Q 017126 43 GKVIELDE-SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (377)
Q Consensus 43 ~~v~~l~~-~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~ 121 (377)
+....++. ..+...+...++++|.||+|||+||+++.|+|.++++.+++ .+.++.|||+.++++|++|+|.++||+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~---~~~~~~vd~~~~~~~~~~y~i~gfPtl 105 (383)
T KOG0191|consen 29 GVVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG---KVKIGAVDCDEHKDLCEKYGIQGFPTL 105 (383)
T ss_pred cchhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC---ceEEEEeCchhhHHHHHhcCCccCcEE
Confidence 33444444 44444568889999999999999999999999999999987 499999999999999999999999999
Q ss_pred EEEeCC-eeEeecCCCCHHHHHHHHHhhcCCCceecCCh-------HHHHHHHHccCCcccEEEeecCCh--------HH
Q 017126 122 KIFMHG-IPTEYYGPRKAELLVRYLKKFVAPDVSILNSD-------AEVSDFVENAGTFFPLFIGFGLDE--------SV 185 (377)
Q Consensus 122 ~~~~~g-~~~~y~g~~~~~~i~~~~~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~v~~~~~~--------~~ 185 (377)
.+|.+| .++.|.|.++.+.+.+|+.+.+.+.+...... ..+.......+. .+++.|+..+ +.
T Consensus 106 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~--~~lv~f~aPwc~~ck~l~~~ 183 (383)
T KOG0191|consen 106 KVFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDA--DWLVEFYAPWCGHCKKLAPE 183 (383)
T ss_pred EEEcCCCceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCc--ceEEEEeccccHHhhhcChH
Confidence 999999 67789999999999999998887654443322 234444444443 4777765442 35
Q ss_pred HHHHHHHhhhhhHHHHh---hcchhhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhCCC
Q 017126 186 MSNLALKYKKKAWFAVA---KDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLP 253 (377)
Q Consensus 186 ~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p 253 (377)
+..++..+.....+.++ .+....++..+++..+|++.+++++......+.|.++.+.+..|+.....+
T Consensus 184 ~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 184 WEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred HHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCC
Confidence 66666666531111111 123567888999999999999988655356677889999999999988655
No 18
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.85 E-value=2e-20 Score=139.96 Aligned_cols=101 Identities=39% Similarity=0.715 Sum_probs=91.3
Q ss_pred CEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEE
Q 017126 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (377)
Q Consensus 44 ~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~ 123 (377)
.+++|++++|+..+.++ +++|.||++||++|+.+.|.|.++++.+++....+.++.|||++++.+|++++|.++|++++
T Consensus 1 ~~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 1 GVLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred CeeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 36789999999999765 59999999999999999999999999987634469999999999999999999999999999
Q ss_pred EeCCeeE-eecCCCCHHHHHHHH
Q 017126 124 FMHGIPT-EYYGPRKAELLVRYL 145 (377)
Q Consensus 124 ~~~g~~~-~y~g~~~~~~i~~~~ 145 (377)
|++|+.. .|.|.++.+.|.+|+
T Consensus 80 ~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeeeEeeCCCCHHHHHhhC
Confidence 9999765 599999999998875
No 19
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.2e-20 Score=143.49 Aligned_cols=105 Identities=36% Similarity=0.553 Sum_probs=96.2
Q ss_pred CCEEEeChhhHHHHH-cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEE
Q 017126 43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (377)
Q Consensus 43 ~~v~~l~~~~f~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~ 121 (377)
..+..++..+|++.+ ++..|++|.|||+||++|+.+.|.+++++.++.+. +.+++||.+++.+++.+|+|+.+||+
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~~ela~~Y~I~avPtv 119 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEHPELAEDYEISAVPTV 119 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccccchHhhcceeeeeEE
Confidence 355667899999866 88899999999999999999999999999998664 99999999999999999999999999
Q ss_pred EEEeCCeeEe-ecCCCCHHHHHHHHHhhcC
Q 017126 122 KIFMHGIPTE-YYGPRKAELLVRYLKKFVA 150 (377)
Q Consensus 122 ~~~~~g~~~~-y~g~~~~~~i~~~~~~~~~ 150 (377)
++|++|+..+ ..|..+.+.+..|+++.+.
T Consensus 120 lvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 120 LVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9999999985 8999999999999988764
No 20
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.84 E-value=3.7e-20 Score=140.21 Aligned_cols=100 Identities=40% Similarity=0.714 Sum_probs=89.7
Q ss_pred CEEEeChhhHHHHH-cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc--chhhHhhcCCCcCCE
Q 017126 44 KVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPT 120 (377)
Q Consensus 44 ~v~~l~~~~f~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~~~~~~~i~~~P~ 120 (377)
.|++|++++|++.+ +.+++++|.||++||++|+.+.|.|.++++.+.+ .+.++.|||++ ++++|++++|.++|+
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~v~~~~~~~~~~~~~~~i~~~Pt 77 (109)
T cd03002 1 PVYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG---LVQVAAVDCDEDKNKPLCGKYGVQGFPT 77 (109)
T ss_pred CeEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC---CceEEEEecCccccHHHHHHcCCCcCCE
Confidence 47889999999988 4567799999999999999999999999998864 48899999998 899999999999999
Q ss_pred EEEEeCCe------eEeecCCCCHHHHHHHHH
Q 017126 121 LKIFMHGI------PTEYYGPRKAELLVRYLK 146 (377)
Q Consensus 121 ~~~~~~g~------~~~y~g~~~~~~i~~~~~ 146 (377)
+++|.+|. ...|.|.++.+.|.+|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 78 LKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 99999885 335999999999999973
No 21
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.5e-20 Score=157.12 Aligned_cols=107 Identities=31% Similarity=0.620 Sum_probs=99.8
Q ss_pred CCCEEEeChhhHHHHH---cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcC
Q 017126 42 DGKVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF 118 (377)
Q Consensus 42 ~~~v~~l~~~~f~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~ 118 (377)
...|.++|+.||+..+ ....|++|+||+|||++|+.+.|.+++++..+++ ++.+++|||++++.++..|||+++
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G---~f~LakvN~D~~p~vAaqfgiqsI 98 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG---KFKLAKVNCDAEPMVAAQFGVQSI 98 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC---ceEEEEecCCcchhHHHHhCcCcC
Confidence 3459999999999987 3445999999999999999999999999998876 499999999999999999999999
Q ss_pred CEEEEEeCCeeEe-ecCCCCHHHHHHHHHhhcCC
Q 017126 119 PTLKIFMHGIPTE-YYGPRKAELLVRYLKKFVAP 151 (377)
Q Consensus 119 P~~~~~~~g~~~~-y~g~~~~~~i~~~~~~~~~~ 151 (377)
|+++.|.+|+++. +.|....+.|.+|+.+++++
T Consensus 99 PtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 99 PTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 9999999999997 99999999999999999987
No 22
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.82 E-value=1.4e-19 Score=135.62 Aligned_cols=99 Identities=45% Similarity=0.785 Sum_probs=89.5
Q ss_pred CEEEeChhhHHHHHc-CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEE
Q 017126 44 KVIELDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (377)
Q Consensus 44 ~v~~l~~~~f~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~ 122 (377)
+|.++++++|++.+. .+.+++|.||++||++|+.+.|.|.++++.+.+ .+.++.+||++++++|++++|.++|+++
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~---~~~~~~id~~~~~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 1 DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG---IVKVGAVDADVHQSLAQQYGVRGFPTIK 77 (103)
T ss_pred CeEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CceEEEEECcchHHHHHHCCCCccCEEE
Confidence 468899999999884 455699999999999999999999999998764 4999999999999999999999999999
Q ss_pred EEeCC--eeEeecCCCCHHHHHHHH
Q 017126 123 IFMHG--IPTEYYGPRKAELLVRYL 145 (377)
Q Consensus 123 ~~~~g--~~~~y~g~~~~~~i~~~~ 145 (377)
+|.+| ....|.|.++.+.|.+|+
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeecCCCCCHHHHHHHh
Confidence 99988 445699999999999997
No 23
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.82 E-value=1.4e-19 Score=136.80 Aligned_cols=100 Identities=25% Similarity=0.352 Sum_probs=89.3
Q ss_pred EEeChhhHHHHH---cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEE
Q 017126 46 IELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (377)
Q Consensus 46 ~~l~~~~f~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~ 122 (377)
..++.++|++.+ +++++++|.||+|||++|+.+.|.|.++++.+.+. .+.++.|||++++.+|++++|.++|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~~~~l~~~~~V~~~Pt~~ 84 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGHERRLARKLGAHSVPAIV 84 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEeccccHHHHHHcCCccCCEEE
Confidence 456788898654 36799999999999999999999999999999752 4899999999999999999999999999
Q ss_pred EEeCCeeEe-ecCCCCHHHHHHHHHh
Q 017126 123 IFMHGIPTE-YYGPRKAELLVRYLKK 147 (377)
Q Consensus 123 ~~~~g~~~~-y~g~~~~~~i~~~~~~ 147 (377)
+|++|+... +.|..+.+.|.+|+++
T Consensus 85 i~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 85 GIINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EEECCEEEEEecCCCCHHHHHHHHhc
Confidence 999998776 6899999999999976
No 24
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.82 E-value=3.7e-19 Score=140.24 Aligned_cols=94 Identities=17% Similarity=0.360 Sum_probs=82.5
Q ss_pred cCCCCCEEEeChhhHHHHHc--CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCC
Q 017126 39 FKIDGKVIELDESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID 116 (377)
Q Consensus 39 ~~~~~~v~~l~~~~f~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~ 116 (377)
+..+..+.++++++|++.+. ..++++|.||++||++|+.+.|.+.++++++++ .++.|+.|||++++++|++++|.
T Consensus 24 ~~~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~--~~v~f~~VDvd~~~~la~~~~V~ 101 (152)
T cd02962 24 YMGPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN--NNLKFGKIDIGRFPNVAEKFRVS 101 (152)
T ss_pred cCCCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc--CCeEEEEEECCCCHHHHHHcCce
Confidence 33457999999999999883 346999999999999999999999999998753 24999999999999999999998
Q ss_pred c------CCEEEEEeCCeeEe-ecC
Q 017126 117 A------FPTLKIFMHGIPTE-YYG 134 (377)
Q Consensus 117 ~------~P~~~~~~~g~~~~-y~g 134 (377)
+ +||+++|++|+.+. +.|
T Consensus 102 ~~~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 102 TSPLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred ecCCcCCCCEEEEEECCEEEEEEec
Confidence 8 99999999998874 554
No 25
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.82 E-value=1.9e-19 Score=134.63 Aligned_cols=100 Identities=45% Similarity=0.777 Sum_probs=92.1
Q ss_pred eChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCC
Q 017126 48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (377)
Q Consensus 48 l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g 127 (377)
|++++|++.++++++++|+||++||++|+.+.|.|.++++.+++. ..+.++.+||++++.+|++|+|.++|++++|.+|
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-PDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-CceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 578999999998999999999999999999999999999998753 2599999999999999999999999999999988
Q ss_pred e-eEeecCCCCHHHHHHHHHhh
Q 017126 128 I-PTEYYGPRKAELLVRYLKKF 148 (377)
Q Consensus 128 ~-~~~y~g~~~~~~i~~~~~~~ 148 (377)
+ ...|.|.++.+.|..|+.++
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CcceeecCCCCHHHHHHHHHhc
Confidence 7 56799999999999999875
No 26
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.81 E-value=3.2e-19 Score=133.89 Aligned_cols=101 Identities=36% Similarity=0.696 Sum_probs=91.8
Q ss_pred CEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc--chhhHhhcCCCcCCEE
Q 017126 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPTL 121 (377)
Q Consensus 44 ~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~~~~~~~i~~~P~~ 121 (377)
+++.+++.+|+..++++++++|.||++||++|+.+.|.+.++++.+.+ ...+.++.+||+. ++.+|++++|+++|++
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~ 79 (104)
T cd02997 1 DVVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-DGKGVLAAVDCTKPEHDALKEEYNVKGFPTF 79 (104)
T ss_pred CeEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-CCceEEEEEECCCCccHHHHHhCCCccccEE
Confidence 367899999999998889999999999999999999999999998864 2358999999998 9999999999999999
Q ss_pred EEEeCCeeE-eecCCCCHHHHHHHH
Q 017126 122 KIFMHGIPT-EYYGPRKAELLVRYL 145 (377)
Q Consensus 122 ~~~~~g~~~-~y~g~~~~~~i~~~~ 145 (377)
++|++|+.. .|.|..+.+.+.+|+
T Consensus 80 ~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 80 KYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 999999855 599999999998885
No 27
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.3e-19 Score=164.39 Aligned_cols=229 Identities=21% Similarity=0.299 Sum_probs=144.2
Q ss_pred CCCCccccccCCCCCEEEeChhhHHHHHc-CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC--cc
Q 017126 30 GLSSEEETKFKIDGKVIELDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD--KY 106 (377)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~--~~ 106 (377)
...++.++++..+++|+.|+..+|+.++. +.+.++|.||++|||||++++|.|+++|+.+.++.+-+.++.|||. .|
T Consensus 26 a~~~~~ptLy~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N 105 (606)
T KOG1731|consen 26 ALGSSNPTLYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN 105 (606)
T ss_pred cccCCCCcccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh
Confidence 33345566777779999999999999984 4459999999999999999999999999999999999999999995 57
Q ss_pred hhhHhhcCCCcCCEEEEEeCCe-e----EeecCCCCHHHHHHHHHhhc-----------CCCceecCChHHHHHHHHcc-
Q 017126 107 SRLASKQEIDAFPTLKIFMHGI-P----TEYYGPRKAELLVRYLKKFV-----------APDVSILNSDAEVSDFVENA- 169 (377)
Q Consensus 107 ~~~~~~~~i~~~P~~~~~~~g~-~----~~y~g~~~~~~i~~~~~~~~-----------~~~~~~i~~~~~~~~~~~~~- 169 (377)
..+|++++|.+||++++|..+. . ..+.|+....++.+.+.+.+ .|....+.+...+.+.-+..
T Consensus 106 ~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~ 185 (606)
T KOG1731|consen 106 VKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGIS 185 (606)
T ss_pred hhhHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccc
Confidence 8899999999999999997652 2 22566666777776665433 34344444443333332221
Q ss_pred -CCcccEEEeecCChH-HHHHHHHHhh-hhhHHHHhhcc-hhhhhhhcCCCCCCeEEEEcCCCCCccccc---CCCCHHH
Q 017126 170 -GTFFPLFIGFGLDES-VMSNLALKYK-KKAWFAVAKDF-SEDTMVLYDFDKVPALVALQPSYNEHNIFY---GPFDEEF 242 (377)
Q Consensus 170 -~~~~~~~v~~~~~~~-~~~~~a~~~~-~~~~~~~~~~~-~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~---g~~~~~~ 242 (377)
..+.+.+|.-..+.. .+..+-..+. +......+.+. ...+.+ ++.+.+|...+++.+........ ++.-.+.
T Consensus 186 ~~~~yvAiv~e~~~s~lg~~~~l~~l~~~~v~vr~~~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~ 264 (606)
T KOG1731|consen 186 TTANYVAIVFETEPSDLGWANLLNDLPSKQVGVRARLDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKK 264 (606)
T ss_pred cccceeEEEEecCCcccHHHHHHhhccCCCcceEEEecchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHH
Confidence 122233332122222 2222222221 11112222111 222233 78888899999887533222222 2222467
Q ss_pred HHHHHHhh---CCCcccccC
Q 017126 243 LEEFIKQN---FLPLSVPIN 259 (377)
Q Consensus 243 l~~fi~~~---~~p~~~~l~ 259 (377)
|.++|... ..|.+...+
T Consensus 265 I~~~lg~~~~a~~pt~~p~~ 284 (606)
T KOG1731|consen 265 IDDLLGDKNEASGPTLHPIT 284 (606)
T ss_pred HHHHhcCccccCCCCcCccc
Confidence 88887554 344444444
No 28
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.81 E-value=4.1e-19 Score=133.96 Aligned_cols=100 Identities=27% Similarity=0.546 Sum_probs=87.9
Q ss_pred CEEEeChhhHHHHH---cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc-chhhHhh-cCCCcC
Q 017126 44 KVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-YSRLASK-QEIDAF 118 (377)
Q Consensus 44 ~v~~l~~~~f~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-~~~~~~~-~~i~~~ 118 (377)
+|++++.++|+..+ +.+++++|.||++||++|+++.|.|.++++.+++ ..+.++.|||+. +..+|++ ++|.++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~--~~~~~~~vd~d~~~~~~~~~~~~v~~~ 79 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG--SNVKVAKFNADGEQREFAKEELQLKSF 79 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc--CCeEEEEEECCccchhhHHhhcCCCcC
Confidence 68899999999988 3568999999999999999999999999999874 349999999997 6888974 999999
Q ss_pred CEEEEEeCCe--eEeecCC-CCHHHHHHHH
Q 017126 119 PTLKIFMHGI--PTEYYGP-RKAELLVRYL 145 (377)
Q Consensus 119 P~~~~~~~g~--~~~y~g~-~~~~~i~~~~ 145 (377)
|++++|.+|. ...|.|. ++.+.|..|+
T Consensus 80 Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999998763 5569995 8999999885
No 29
>PHA02278 thioredoxin-like protein
Probab=99.81 E-value=5.5e-19 Score=130.30 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=82.3
Q ss_pred ChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc----hhhHhhcCCCcCCEEEEE
Q 017126 49 DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----SRLASKQEIDAFPTLKIF 124 (377)
Q Consensus 49 ~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~~~~~~~i~~~P~~~~~ 124 (377)
+.++|++.++++++++|+|||+||++|+.+.|.++++++.... ++.++.||++.+ ++++++|+|.++||+++|
T Consensus 3 ~~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 3 SLVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CHHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 4578999998899999999999999999999999999987433 367899999976 689999999999999999
Q ss_pred eCCeeEe-ecCCCCHHHHHHH
Q 017126 125 MHGIPTE-YYGPRKAELLVRY 144 (377)
Q Consensus 125 ~~g~~~~-y~g~~~~~~i~~~ 144 (377)
++|+.+. ..|..+.+.|.++
T Consensus 80 k~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 80 KDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred ECCEEEEEEeCCCCHHHHHhh
Confidence 9999885 7898888888776
No 30
>PRK10996 thioredoxin 2; Provisional
Probab=99.81 E-value=9.6e-19 Score=137.47 Aligned_cols=105 Identities=26% Similarity=0.546 Sum_probs=96.5
Q ss_pred CCCEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEE
Q 017126 42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (377)
Q Consensus 42 ~~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~ 121 (377)
++.++.++..+|++.++++++++|.||++||++|+.+.|.+.++++.+.+ .+.++.||++++++++++|+|.++|++
T Consensus 34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~~~~l~~~~~V~~~Ptl 110 (139)
T PRK10996 34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG---KVRFVKVNTEAERELSARFRIRSIPTI 110 (139)
T ss_pred CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence 46788899999999998899999999999999999999999999987754 499999999999999999999999999
Q ss_pred EEEeCCeeEe-ecCCCCHHHHHHHHHhhc
Q 017126 122 KIFMHGIPTE-YYGPRKAELLVRYLKKFV 149 (377)
Q Consensus 122 ~~~~~g~~~~-y~g~~~~~~i~~~~~~~~ 149 (377)
++|++|+.+. +.|..+.+.+.+|+++.+
T Consensus 111 ii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 111 MIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 9999999885 799999999999998753
No 31
>PRK09381 trxA thioredoxin; Provisional
Probab=99.81 E-value=1.1e-18 Score=132.04 Aligned_cols=105 Identities=34% Similarity=0.581 Sum_probs=95.2
Q ss_pred CCCEEEeChhhHHHHH-cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCE
Q 017126 42 DGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT 120 (377)
Q Consensus 42 ~~~v~~l~~~~f~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~ 120 (377)
++.++++++++|.+.+ +.+++++|.||++||++|+.+.|.|+++++.+.+ ++.++.+||++++.++++|+|.++|+
T Consensus 2 ~~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt 78 (109)
T PRK09381 2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPT 78 (109)
T ss_pred CCcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEECCCChhHHHhCCCCcCCE
Confidence 4688999999999854 6688999999999999999999999999998754 49999999999999999999999999
Q ss_pred EEEEeCCeeEe-ecCCCCHHHHHHHHHhhc
Q 017126 121 LKIFMHGIPTE-YYGPRKAELLVRYLKKFV 149 (377)
Q Consensus 121 ~~~~~~g~~~~-y~g~~~~~~i~~~~~~~~ 149 (377)
+++|++|+.+. +.|..+.+.|..|+..++
T Consensus 79 ~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 79 LLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 99999998774 889999999999998765
No 32
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.81 E-value=3.2e-19 Score=131.82 Aligned_cols=84 Identities=24% Similarity=0.486 Sum_probs=77.0
Q ss_pred cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC-cchhhHhhcCCCcCCEEEEEeCCeeEeecCCC
Q 017126 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLASKQEIDAFPTLKIFMHGIPTEYYGPR 136 (377)
Q Consensus 58 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-~~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~ 136 (377)
.++++++|.||++||++|+.+.|.|+++++.+.+ +.++.||++ ++++++++|+|.++||+++|++|....|.|.+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~ 91 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGTR 91 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecCCC
Confidence 5779999999999999999999999999998854 778999999 89999999999999999999999555699999
Q ss_pred CHHHHHHHH
Q 017126 137 KAELLVRYL 145 (377)
Q Consensus 137 ~~~~i~~~~ 145 (377)
+.+.|.+|+
T Consensus 92 ~~~~l~~f~ 100 (100)
T cd02999 92 TLDSLAAFY 100 (100)
T ss_pred CHHHHHhhC
Confidence 999999885
No 33
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.80 E-value=6.1e-19 Score=132.02 Aligned_cols=97 Identities=36% Similarity=0.754 Sum_probs=86.9
Q ss_pred hhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCeeE
Q 017126 51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPT 130 (377)
Q Consensus 51 ~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~ 130 (377)
++|++. .++++++|.||++||++|+.+.|.|.++++.+++.+..+.++.+||+.++++|++++|.++|++++|++|...
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~~ 85 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLAY 85 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCce
Confidence 677775 4568999999999999999999999999999865444699999999999999999999999999999888766
Q ss_pred eecCCCCHHHHHHHHHhh
Q 017126 131 EYYGPRKAELLVRYLKKF 148 (377)
Q Consensus 131 ~y~g~~~~~~i~~~~~~~ 148 (377)
.|.|..+.+.|.+|+++.
T Consensus 86 ~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 86 NYRGPRTKDDIVEFANRV 103 (104)
T ss_pred eecCCCCHHHHHHHHHhh
Confidence 799999999999999764
No 34
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.80 E-value=9.9e-19 Score=129.06 Aligned_cols=92 Identities=32% Similarity=0.522 Sum_probs=82.7
Q ss_pred hHHHHH-cC-CCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCee
Q 017126 52 NFDSAI-SS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIP 129 (377)
Q Consensus 52 ~f~~~~-~~-~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~ 129 (377)
+|++.+ +. +++++|.||++||++|+.+.|.+.++++.+.+ .+.++.|||++++++|++|+|.++|++++|.+|+.
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG---QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC---cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 577777 33 57999999999999999999999999998864 38999999999999999999999999999999987
Q ss_pred Ee-ecCCCCHHHHHHHHH
Q 017126 130 TE-YYGPRKAELLVRYLK 146 (377)
Q Consensus 130 ~~-y~g~~~~~~i~~~~~ 146 (377)
.. |.|..+.+.|..|++
T Consensus 79 ~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 79 VDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeeecCCCCHHHHHHHhC
Confidence 74 999999999998873
No 35
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.80 E-value=7.3e-19 Score=131.92 Aligned_cols=100 Identities=41% Similarity=0.724 Sum_probs=88.8
Q ss_pred CEEEeChhhHHHHHcC-CCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEE
Q 017126 44 KVIELDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (377)
Q Consensus 44 ~v~~l~~~~f~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~ 122 (377)
+|..|+.++|++.+.+ +++++|+||++||++|+.+.|.|.++++.+++ ...+.++.+||+.+ +++..+++.++|+++
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-DDNVVIAKMDATAN-DVPSEFVVDGFPTIL 78 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-CCCEEEEEEeCcch-hhhhhccCCCCCEEE
Confidence 4789999999998844 48999999999999999999999999999865 24599999999987 688999999999999
Q ss_pred EEeCCe---eEeecCCCCHHHHHHHH
Q 017126 123 IFMHGI---PTEYYGPRKAELLVRYL 145 (377)
Q Consensus 123 ~~~~g~---~~~y~g~~~~~~i~~~~ 145 (377)
+|.+|. ...|.|.++.+.|.+|+
T Consensus 79 ~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 79 FFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEcCCCcCCceEccCCcCHHHHHhhC
Confidence 999886 44699999999999885
No 36
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.78 E-value=1.9e-18 Score=129.91 Aligned_cols=101 Identities=49% Similarity=0.899 Sum_probs=89.3
Q ss_pred CEEEeChhhHHHHHcCC-CeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc-chhhHhhcCCCcCCEE
Q 017126 44 KVIELDESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-YSRLASKQEIDAFPTL 121 (377)
Q Consensus 44 ~v~~l~~~~f~~~~~~~-~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-~~~~~~~~~i~~~P~~ 121 (377)
++.+|++++|+..+.+. ++++|.||++||++|+.+.|.|..+++.++. ...+.++.+||++ ++++|++++|.++|++
T Consensus 1 ~~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~i~~~P~~ 79 (105)
T cd02998 1 NVVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-EDDVVIAKVDADEANKDLAKKYGVSGFPTL 79 (105)
T ss_pred CeEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-CCCEEEEEEECCCcchhhHHhCCCCCcCEE
Confidence 36789999999988544 4999999999999999999999999999863 3459999999999 9999999999999999
Q ss_pred EEEeCC--eeEeecCCCCHHHHHHHH
Q 017126 122 KIFMHG--IPTEYYGPRKAELLVRYL 145 (377)
Q Consensus 122 ~~~~~g--~~~~y~g~~~~~~i~~~~ 145 (377)
++|.+| ....|.|.++.+.|.+|+
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 80 KFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEeCCCCCccccCCccCHHHHHhhC
Confidence 999987 344599999999999885
No 37
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.78 E-value=4e-18 Score=126.88 Aligned_cols=96 Identities=21% Similarity=0.394 Sum_probs=85.0
Q ss_pred eChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCC
Q 017126 48 LDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (377)
Q Consensus 48 l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g 127 (377)
-|.++|+.+++++++++|+|||+||++|+.+.|.+.++++.+++ ..+.|+.+|++ +++++++|+|+++|++++|++|
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~--~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD--DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC--CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence 37889999998899999999999999999999999999998753 24889999999 8899999999999999999999
Q ss_pred eeEe-ecCCCCHHHHHHHHHh
Q 017126 128 IPTE-YYGPRKAELLVRYLKK 147 (377)
Q Consensus 128 ~~~~-y~g~~~~~~i~~~~~~ 147 (377)
+.+. ..| .+.+.+.+++.+
T Consensus 82 ~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 82 ELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEEEEec-CChHHHHHHHhh
Confidence 9886 455 588888888865
No 38
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.78 E-value=2.4e-18 Score=127.52 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=74.5
Q ss_pred hhhHHHHHc--CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCC
Q 017126 50 ESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (377)
Q Consensus 50 ~~~f~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g 127 (377)
.++|++.+. .+++++|.|||+||++|+.+.|.+.+++.++.+ .+.|++||++++++++++|+|.++||+++|++|
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~---~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN---FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC---ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence 467888884 578999999999999999999999999998764 389999999999999999999999999999999
Q ss_pred eeEe-ecCCC
Q 017126 128 IPTE-YYGPR 136 (377)
Q Consensus 128 ~~~~-y~g~~ 136 (377)
+.+. ..|..
T Consensus 79 ~~v~~~~G~~ 88 (114)
T cd02954 79 KHMKIDLGTG 88 (114)
T ss_pred EEEEEEcCCC
Confidence 8875 55543
No 39
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.77 E-value=2.5e-18 Score=128.19 Aligned_cols=98 Identities=43% Similarity=0.841 Sum_probs=88.6
Q ss_pred EeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeC
Q 017126 47 ELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH 126 (377)
Q Consensus 47 ~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 126 (377)
+|++++|.+.++++++++|.||++||++|+.+.|.|.++++.++. ...+.++.+||++++.+|++++|.++|++++|.+
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 578999999998888999999999999999999999999998851 2359999999999999999999999999999998
Q ss_pred C--eeEeecCCCCHHHHHHHH
Q 017126 127 G--IPTEYYGPRKAELLVRYL 145 (377)
Q Consensus 127 g--~~~~y~g~~~~~~i~~~~ 145 (377)
| ....|.|..+.+.+.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 8 344699999999998874
No 40
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.77 E-value=6.7e-18 Score=127.95 Aligned_cols=99 Identities=34% Similarity=0.577 Sum_probs=83.4
Q ss_pred CCEEEeChhhHHHHHcC-CCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc--chhhHhhcCCCcCC
Q 017126 43 GKVIELDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFP 119 (377)
Q Consensus 43 ~~v~~l~~~~f~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~~~~~~~i~~~P 119 (377)
+++++++.++|++.+.+ +++++|.||++||++|+.+.|.|.++++.+++..+.+.++.+||+. ++++|++++|+++|
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P 80 (114)
T cd02992 1 DPVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYP 80 (114)
T ss_pred CCeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCC
Confidence 47899999999999844 4699999999999999999999999999987654569999999964 67899999999999
Q ss_pred EEEEEeCCeeE-----eecCC-CCHHHH
Q 017126 120 TLKIFMHGIPT-----EYYGP-RKAELL 141 (377)
Q Consensus 120 ~~~~~~~g~~~-----~y~g~-~~~~~i 141 (377)
++++|++|... .|.|+ +..+.+
T Consensus 81 t~~lf~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02992 81 TLRYFPPFSKEATDGLKQEGPERDVNEL 108 (114)
T ss_pred EEEEECCCCccCCCCCcccCCccCHHHH
Confidence 99999988533 36666 555544
No 41
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.75 E-value=1.9e-17 Score=123.41 Aligned_cols=93 Identities=15% Similarity=0.260 Sum_probs=79.0
Q ss_pred ChhhHHHHHcC--CCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcch---hhHhhcCCCcCCEEEE
Q 017126 49 DESNFDSAISS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS---RLASKQEIDAFPTLKI 123 (377)
Q Consensus 49 ~~~~f~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~---~~~~~~~i~~~P~~~~ 123 (377)
+.++|++.+.+ +++++|.||++||++|+.+.|.+.++++.+. ++.|+.||+++++ +++++|+|.++||+++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~----~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 77 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN----DVVFLLVNGDENDSTMELCRREKIIEVPHFLF 77 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC----CCEEEEEECCCChHHHHHHHHcCCCcCCEEEE
Confidence 46788888843 7899999999999999999999999998872 3899999998874 8999999999999999
Q ss_pred EeCCeeEe-ecCCCCHHHHHHHHH
Q 017126 124 FMHGIPTE-YYGPRKAELLVRYLK 146 (377)
Q Consensus 124 ~~~g~~~~-y~g~~~~~~i~~~~~ 146 (377)
|++|+.+. +.| ...+.+.+-+.
T Consensus 78 ~~~G~~v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 78 YKDGEKIHEEEG-IGPDELIGDVL 100 (103)
T ss_pred EeCCeEEEEEeC-CCHHHHHHHHH
Confidence 99998775 777 44566665554
No 42
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.75 E-value=1.7e-17 Score=125.96 Aligned_cols=88 Identities=27% Similarity=0.454 Sum_probs=79.6
Q ss_pred CCCEEEeChhhHHHHHcCC---CeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcC
Q 017126 42 DGKVIELDESNFDSAISSF---DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF 118 (377)
Q Consensus 42 ~~~v~~l~~~~f~~~~~~~---~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~ 118 (377)
.+.+..+++++|.+.+.+. ++++|+||+|||++|+.+.|.+++++..+.+ +.|++||++++ +++++++|.++
T Consensus 3 ~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~~~~-~l~~~~~i~~~ 77 (113)
T cd02957 3 FGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINAEKA-FLVNYLDIKVL 77 (113)
T ss_pred CceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEchhh-HHHHhcCCCcC
Confidence 3678899999999998554 8999999999999999999999999998753 88999999999 99999999999
Q ss_pred CEEEEEeCCeeEe-ecC
Q 017126 119 PTLKIFMHGIPTE-YYG 134 (377)
Q Consensus 119 P~~~~~~~g~~~~-y~g 134 (377)
|++++|++|+.+. +.|
T Consensus 78 Pt~~~f~~G~~v~~~~G 94 (113)
T cd02957 78 PTLLVYKNGELIDNIVG 94 (113)
T ss_pred CEEEEEECCEEEEEEec
Confidence 9999999998875 666
No 43
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.75 E-value=1.3e-17 Score=122.66 Aligned_cols=97 Identities=16% Similarity=0.085 Sum_probs=88.1
Q ss_pred CCEEEeChhhHHHHHcCCCeEEEEEECCC--ChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCE
Q 017126 43 GKVIELDESNFDSAISSFDYILVDFYAPW--CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT 120 (377)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~ 120 (377)
-+...+|..||++.++.+.+++|.||++| |++|+.+.|.+.++++++.+ .+.|+.||++++++++.+|+|+++||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~---~v~f~kVdid~~~~la~~f~V~sIPT 86 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG---RFRAAVVGRADEQALAARFGVLRTPA 86 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC---cEEEEEEECCCCHHHHHHcCCCcCCE
Confidence 46778999999999988899999999997 99999999999999998865 38999999999999999999999999
Q ss_pred EEEEeCCeeEe-ecCCCCHHHHH
Q 017126 121 LKIFMHGIPTE-YYGPRKAELLV 142 (377)
Q Consensus 121 ~~~~~~g~~~~-y~g~~~~~~i~ 142 (377)
+++|++|+.+. ..|..+.+++.
T Consensus 87 li~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 87 LLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEECCEEEEEEeCccCHHHHh
Confidence 99999999885 78888776654
No 44
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.74 E-value=4e-17 Score=121.68 Aligned_cols=98 Identities=36% Similarity=0.629 Sum_probs=87.6
Q ss_pred eChhhHHHHHcC-CCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeC
Q 017126 48 LDESNFDSAISS-FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH 126 (377)
Q Consensus 48 l~~~~f~~~~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 126 (377)
++.++|.+.+++ .++++|.||++||++|+.+.|.+.++++.+.+ ++.++.+||++++.++++|+|.++|++++|++
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~ 77 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKN 77 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeC
Confidence 467888888855 45999999999999999999999999988754 49999999999999999999999999999999
Q ss_pred CeeEe-ecCCCCHHHHHHHHHhh
Q 017126 127 GIPTE-YYGPRKAELLVRYLKKF 148 (377)
Q Consensus 127 g~~~~-y~g~~~~~~i~~~~~~~ 148 (377)
|+... +.|..+.+.+.+|+++.
T Consensus 78 g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 78 GKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred CcEeeeecCCCCHHHHHHHHHhh
Confidence 98765 78999999999999865
No 45
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.74 E-value=5.8e-17 Score=122.45 Aligned_cols=89 Identities=27% Similarity=0.412 Sum_probs=80.3
Q ss_pred CCCEEEeCh-hhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCE
Q 017126 42 DGKVIELDE-SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT 120 (377)
Q Consensus 42 ~~~v~~l~~-~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~ 120 (377)
.+.+..+++ ++|.+.+.++++++|+||++||++|+.+.|.++++++.+.+ +.|++||++++++++++|+|.++|+
T Consensus 3 ~g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~~~l~~~~~v~~vPt 78 (113)
T cd02989 3 HGKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKAPFLVEKLNIKVLPT 78 (113)
T ss_pred CCCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccCHHHHHHCCCccCCE
Confidence 357788877 99999998889999999999999999999999999987643 8999999999999999999999999
Q ss_pred EEEEeCCeeEe-ecC
Q 017126 121 LKIFMHGIPTE-YYG 134 (377)
Q Consensus 121 ~~~~~~g~~~~-y~g 134 (377)
+++|++|+.+. +.|
T Consensus 79 ~l~fk~G~~v~~~~g 93 (113)
T cd02989 79 VILFKNGKTVDRIVG 93 (113)
T ss_pred EEEEECCEEEEEEEC
Confidence 99999998774 444
No 46
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.74 E-value=1.1e-16 Score=135.86 Aligned_cols=189 Identities=21% Similarity=0.214 Sum_probs=128.3
Q ss_pred hhHHHHHcCCCeEEEEEEC---CCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCC
Q 017126 51 SNFDSAISSFDYILVDFYA---PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (377)
Q Consensus 51 ~~f~~~~~~~~~~~v~f~~---~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g 127 (377)
+.|.+.++ +...++.|++ +||++|+.+.|.+++++..+.+ -.+.++.+|.+++++++++|+|.++||+++|++|
T Consensus 11 ~~~~~~~~-~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g 87 (215)
T TIGR02187 11 ELFLKELK-NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEG 87 (215)
T ss_pred HHHHHhcC-CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCCcccHHHHHHcCCCccCEEEEEeCC
Confidence 34344444 3555777888 9999999999999999998743 1366777777799999999999999999999999
Q ss_pred eeE--eecCCCCHHHHHHHHHhhcC--CCceecCChHHHHHHHHccCCcccEEEeecCC----hH----HHHHHHHHhhh
Q 017126 128 IPT--EYYGPRKAELLVRYLKKFVA--PDVSILNSDAEVSDFVENAGTFFPLFIGFGLD----ES----VMSNLALKYKK 195 (377)
Q Consensus 128 ~~~--~y~g~~~~~~i~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~----~~----~~~~~a~~~~~ 195 (377)
+.+ .+.|..+.+.+.+|+...+. .....+ +.... +.++..+.. +.++.|+.. .+ .++.++.....
T Consensus 88 ~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L-~~~~~-~~l~~~~~p-v~I~~F~a~~C~~C~~~~~~l~~l~~~~~~ 164 (215)
T TIGR02187 88 KDGGIRYTGIPAGYEFAALIEDIVRVSQGEPGL-SEKTV-ELLQSLDEP-VRIEVFVTPTCPYCPYAVLMAHKFALANDK 164 (215)
T ss_pred eeeEEEEeecCCHHHHHHHHHHHHHhcCCCCCC-CHHHH-HHHHhcCCC-cEEEEEECCCCCCcHHHHHHHHHHHHhcCc
Confidence 875 58999999999999988753 222333 33233 333333322 233334433 22 23333433211
Q ss_pred hhHHHHhhcchhhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHh
Q 017126 196 KAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQ 249 (377)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~g~~~~~~l~~fi~~ 249 (377)
........+...+++.+|++.+.|++++++.+ . .+.|....+++.+|+..
T Consensus 165 i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~--~--~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 165 ILGEMIEANENPDLAEKYGVMSVPKIVINKGV--E--EFVGAYPEEQFLEYILS 214 (215)
T ss_pred eEEEEEeCCCCHHHHHHhCCccCCEEEEecCC--E--EEECCCCHHHHHHHHHh
Confidence 11111223456788899999999999998642 1 28888888999999874
No 47
>PLN02309 5'-adenylylsulfate reductase
Probab=99.73 E-value=4.5e-17 Score=150.02 Aligned_cols=106 Identities=25% Similarity=0.525 Sum_probs=94.4
Q ss_pred CCCCEEEeChhhHHHHH---cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC-cchhhHh-hcCC
Q 017126 41 IDGKVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLAS-KQEI 115 (377)
Q Consensus 41 ~~~~v~~l~~~~f~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-~~~~~~~-~~~i 115 (377)
+++.|+.|+.++|++.+ +.+++++|.||+|||++|+.+.|.|.++++.+.+. .+.|+.|||+ ++.++|+ +|+|
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--~V~f~kVD~d~~~~~la~~~~~I 420 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS--GVKVAKFRADGDQKEFAKQELQL 420 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CeEEEEEECCCcchHHHHhhCCC
Confidence 56799999999999987 47789999999999999999999999999998643 4999999999 8889997 6999
Q ss_pred CcCCEEEEEeCCe--eEeecC-CCCHHHHHHHHHhh
Q 017126 116 DAFPTLKIFMHGI--PTEYYG-PRKAELLVRYLKKF 148 (377)
Q Consensus 116 ~~~P~~~~~~~g~--~~~y~g-~~~~~~i~~~~~~~ 148 (377)
.++||+++|.+|. ++.|.| .++.+.|+.|++..
T Consensus 421 ~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 421 GSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999999874 567975 79999999999764
No 48
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.72 E-value=5.2e-17 Score=149.61 Aligned_cols=105 Identities=26% Similarity=0.472 Sum_probs=91.9
Q ss_pred CCCCEEEeChhhHHHHHc---CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcch-hhH-hhcCC
Q 017126 41 IDGKVIELDESNFDSAIS---SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-RLA-SKQEI 115 (377)
Q Consensus 41 ~~~~v~~l~~~~f~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-~~~-~~~~i 115 (377)
.+..|++||..||++.++ .+++++|.||+|||++|+.+.|.|+++++.+.+. .+.|+.|||+.+. .++ ++|+|
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~--~v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS--GVKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CcEEEEEECCCCccHHHHHHcCC
Confidence 467999999999999985 7789999999999999999999999999998653 3899999998764 454 78999
Q ss_pred CcCCEEEEEeCCe--eEeec-CCCCHHHHHHHHHh
Q 017126 116 DAFPTLKIFMHGI--PTEYY-GPRKAELLVRYLKK 147 (377)
Q Consensus 116 ~~~P~~~~~~~g~--~~~y~-g~~~~~~i~~~~~~ 147 (377)
.++||+++|++|. ++.|. |.++.+.|..|++.
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 9999999999984 56797 58999999999975
No 49
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.70 E-value=2.5e-16 Score=116.44 Aligned_cols=94 Identities=22% Similarity=0.472 Sum_probs=80.3
Q ss_pred ChhhHHHHHcCC--CeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeC
Q 017126 49 DESNFDSAISSF--DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH 126 (377)
Q Consensus 49 ~~~~f~~~~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 126 (377)
+.++|++.+... ++++|.||++||++|+.+.|.+++++..+. ..+.++.+|++++++++++|+|.++|++++|.+
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~---~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~ 77 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAF---PSVLFLSIEAEELPEISEKFEITAVPTFVFFRN 77 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhC---CceEEEEEccccCHHHHHhcCCccccEEEEEEC
Confidence 357888888655 999999999999999999999999998862 359999999999999999999999999999999
Q ss_pred CeeEeecCCCCHHHHHHHH
Q 017126 127 GIPTEYYGPRKAELLVRYL 145 (377)
Q Consensus 127 g~~~~y~g~~~~~~i~~~~ 145 (377)
|+.+....+...+.|.+.+
T Consensus 78 g~~~~~~~g~~~~~l~~~~ 96 (97)
T cd02984 78 GTIVDRVSGADPKELAKKV 96 (97)
T ss_pred CEEEEEEeCCCHHHHHHhh
Confidence 9887643335666666654
No 50
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.3e-17 Score=148.35 Aligned_cols=105 Identities=40% Similarity=0.680 Sum_probs=93.6
Q ss_pred CCEEEeChhhHHHHH-cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEE
Q 017126 43 GKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (377)
Q Consensus 43 ~~v~~l~~~~f~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~ 121 (377)
++|..|-.+||+.++ ..++-+||.||||||+||+++.|.|+++|+.+++ .+++.++++|.+.|.. ....+.++|||
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~-~~~vviAKmDaTaNd~--~~~~~~~fPTI 442 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKD-DENVVIAKMDATANDV--PSLKVDGFPTI 442 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcC-CCCcEEEEeccccccC--ccccccccceE
Confidence 579999999999987 7779999999999999999999999999999988 5679999999988753 34567779999
Q ss_pred EEEeCCe---eEeecCCCCHHHHHHHHHhhcC
Q 017126 122 KIFMHGI---PTEYYGPRKAELLVRYLKKFVA 150 (377)
Q Consensus 122 ~~~~~g~---~~~y~g~~~~~~i~~~~~~~~~ 150 (377)
.+|..|. ++.|.|.|+.+++..|+.+.-.
T Consensus 443 ~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 443 LFFPAGHKSNPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred EEecCCCCCCCcccCCCcchHHHHhhhccCCC
Confidence 9999874 6779999999999999988765
No 51
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.8e-16 Score=115.07 Aligned_cols=83 Identities=33% Similarity=0.642 Sum_probs=72.0
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCeeEe-ecCCCC
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPRK 137 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~-y~g~~~ 137 (377)
.+++++|.|||+|||+|+.+.|.+.+++.++.+ +.|.+||+++++++|++++|+..||+++|++|+.+. ..|...
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~ 95 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK 95 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCH
Confidence 358999999999999999999999999998754 999999999999999999999999999999998875 666543
Q ss_pred HHHHHHHHH
Q 017126 138 AELLVRYLK 146 (377)
Q Consensus 138 ~~~i~~~~~ 146 (377)
. .+.+.+.
T Consensus 96 ~-~l~~~i~ 103 (106)
T KOG0907|consen 96 A-ELEKKIA 103 (106)
T ss_pred H-HHHHHHH
Confidence 3 5555544
No 52
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.68 E-value=8.5e-16 Score=118.51 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=72.3
Q ss_pred ChhhHHHHH--cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEE-EEe
Q 017126 49 DESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK-IFM 125 (377)
Q Consensus 49 ~~~~f~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~-~~~ 125 (377)
+..+|++.+ +++++++|.||++||++|+.+.|.+.++++++.+ .+.|++||++++++++++|+|++.|+++ +|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~---~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN---FAVIYLVDITEVPDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC---ceEEEEEECCCCHHHHHHcCccCCCcEEEEEE
Confidence 478899988 4678999999999999999999999999998865 3889999999999999999999776666 999
Q ss_pred CCe-eEe-ecC
Q 017126 126 HGI-PTE-YYG 134 (377)
Q Consensus 126 ~g~-~~~-y~g 134 (377)
+|+ .+. ..|
T Consensus 87 ~g~~~vd~~tG 97 (142)
T PLN00410 87 NKHIMIDLGTG 97 (142)
T ss_pred CCeEEEEEecc
Confidence 998 554 456
No 53
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.68 E-value=2.8e-16 Score=117.64 Aligned_cols=93 Identities=23% Similarity=0.314 Sum_probs=81.2
Q ss_pred hhHHHHHcCCCeEEEEEECCCChhHhhHHHHH---HHHHHHhhcCCCCeEEEEEeCCc----chhhHhhcCCCcCCEEEE
Q 017126 51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADK----YSRLASKQEIDAFPTLKI 123 (377)
Q Consensus 51 ~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~----~~~~~~~~~i~~~P~~~~ 123 (377)
+.|.++++++++++|.||++||++|+.+.+.+ .++++.+++ ++.++.||+++ +++++++|+|.++|++++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 57888888999999999999999999999988 578887764 49999999987 678999999999999999
Q ss_pred Ee--CCeeE-eecCCCCHHHHHHHHH
Q 017126 124 FM--HGIPT-EYYGPRKAELLVRYLK 146 (377)
Q Consensus 124 ~~--~g~~~-~y~g~~~~~~i~~~~~ 146 (377)
|. +|+.. .+.|..+.+.+.++++
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHhC
Confidence 98 57654 5899999999988763
No 54
>PTZ00102 disulphide isomerase; Provisional
Probab=99.68 E-value=4.4e-16 Score=149.10 Aligned_cols=111 Identities=28% Similarity=0.527 Sum_probs=99.8
Q ss_pred CCCCEEEeChhhHHHHH-cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCC
Q 017126 41 IDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP 119 (377)
Q Consensus 41 ~~~~v~~l~~~~f~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 119 (377)
.++.+..|+.++|++.+ +.+++++|.|||+||++|+.+.|.|.++++.+++ ...+.++.+||+.+...|+.++++++|
T Consensus 355 ~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~v~~~~id~~~~~~~~~~~~v~~~P 433 (477)
T PTZ00102 355 QDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD-NDSIIVAKMNGTANETPLEEFSWSAFP 433 (477)
T ss_pred CCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc-CCcEEEEEEECCCCccchhcCCCcccC
Confidence 36789999999999985 7778999999999999999999999999998865 346999999999999999999999999
Q ss_pred EEEEEeCCee--EeecCCCCHHHHHHHHHhhcCCC
Q 017126 120 TLKIFMHGIP--TEYYGPRKAELLVRYLKKFVAPD 152 (377)
Q Consensus 120 ~~~~~~~g~~--~~y~g~~~~~~i~~~~~~~~~~~ 152 (377)
++++|.+|.. ..|.|.++.+.|.+|+.++...+
T Consensus 434 t~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~ 468 (477)
T PTZ00102 434 TILFVKAGERTPIPYEGERTVEGFKEFVNKHATNP 468 (477)
T ss_pred eEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCC
Confidence 9999998754 46999999999999999987653
No 55
>PTZ00051 thioredoxin; Provisional
Probab=99.68 E-value=5e-16 Score=115.03 Aligned_cols=88 Identities=39% Similarity=0.781 Sum_probs=78.0
Q ss_pred ChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCe
Q 017126 49 DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI 128 (377)
Q Consensus 49 ~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~ 128 (377)
+.++|.++++++++++|.||++||++|+.+.|.+.++++.+. .+.++.+|++++++++++|+|.++|++++|++|+
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDELSEVAEKENITSMPTFKVFKNGS 82 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcchHHHHHHCCCceeeEEEEEeCCe
Confidence 467889999888999999999999999999999999998654 3899999999999999999999999999999998
Q ss_pred eEe-ecCCCCHHHH
Q 017126 129 PTE-YYGPRKAELL 141 (377)
Q Consensus 129 ~~~-y~g~~~~~~i 141 (377)
.+. +.|. ..+.|
T Consensus 83 ~~~~~~G~-~~~~~ 95 (98)
T PTZ00051 83 VVDTLLGA-NDEAL 95 (98)
T ss_pred EEEEEeCC-CHHHh
Confidence 885 7774 44544
No 56
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.66 E-value=1.8e-15 Score=123.02 Aligned_cols=100 Identities=27% Similarity=0.333 Sum_probs=83.7
Q ss_pred CCCEEEeCh-hhHHHHHcCC---CeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCc
Q 017126 42 DGKVIELDE-SNFDSAISSF---DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA 117 (377)
Q Consensus 42 ~~~v~~l~~-~~f~~~~~~~---~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~ 117 (377)
-+.+..++. ++|.+.+.+. .+++|.||++||++|+.+.|.+.+++..+. .+.|++||++++ .++.+|+|.+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d~~-~l~~~f~v~~ 135 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRASAT-GASDEFDTDA 135 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEeccch-hhHHhCCCCC
Confidence 578999999 9999998543 399999999999999999999999998864 399999999988 8999999999
Q ss_pred CCEEEEEeCCeeEe-ecC-------CCCHHHHHHHHH
Q 017126 118 FPTLKIFMHGIPTE-YYG-------PRKAELLVRYLK 146 (377)
Q Consensus 118 ~P~~~~~~~g~~~~-y~g-------~~~~~~i~~~~~ 146 (377)
+||+++|++|+.+. ..| ..+.+.|..|+.
T Consensus 136 vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~ 172 (175)
T cd02987 136 LPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLV 172 (175)
T ss_pred CCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHH
Confidence 99999999998774 433 234455555443
No 57
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.66 E-value=1.7e-15 Score=119.34 Aligned_cols=98 Identities=21% Similarity=0.428 Sum_probs=83.2
Q ss_pred hhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc--chhhHhhcCCCcCCEEEEEe-C
Q 017126 50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPTLKIFM-H 126 (377)
Q Consensus 50 ~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~~~~~~~i~~~P~~~~~~-~ 126 (377)
...|+..+.++++++|.||++||++|+.+.|.+.++++.+.+ .+.|+.||++. +..++++|+|.++|++++|. +
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD---QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc---CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence 456777888889999999999999999999999999998754 26666666654 46899999999999999995 7
Q ss_pred CeeEe-ecCCCCHHHHHHHHHhhcC
Q 017126 127 GIPTE-YYGPRKAELLVRYLKKFVA 150 (377)
Q Consensus 127 g~~~~-y~g~~~~~~i~~~~~~~~~ 150 (377)
|+.+. +.|..+.+.|.+++.+.+.
T Consensus 87 G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 87 GNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 88775 8899999999999988775
No 58
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.66 E-value=1.9e-15 Score=111.46 Aligned_cols=86 Identities=22% Similarity=0.384 Sum_probs=78.8
Q ss_pred cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCeeEe-ecCCC
Q 017126 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTE-YYGPR 136 (377)
Q Consensus 58 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~-y~g~~ 136 (377)
+.+++++|.||++||+.|+.+.|.++++++.+.+ ++.++.+|++++++++++++|.++|++++|++|+.+. +.|..
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~ 87 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG---AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVK 87 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCc
Confidence 6778999999999999999999999999988753 4999999999999999999999999999999998775 89999
Q ss_pred CHHHHHHHHH
Q 017126 137 KAELLVRYLK 146 (377)
Q Consensus 137 ~~~~i~~~~~ 146 (377)
+.+.+.+|++
T Consensus 88 ~~~~~~~~l~ 97 (97)
T cd02949 88 MKSEYREFIE 97 (97)
T ss_pred cHHHHHHhhC
Confidence 9999988863
No 59
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.64 E-value=2.1e-15 Score=110.76 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=71.4
Q ss_pred hhhHHHHHc--CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCC
Q 017126 50 ESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (377)
Q Consensus 50 ~~~f~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g 127 (377)
.+.|++.+. ++++++|.|+++||++|+.+.|.+.++|+++.+. +.|+.||+++.+++++.|+|+..|++++|++|
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev~dva~~y~I~amPtfvffkng 78 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKVPVYTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccccHHHHHhcCceeCcEEEEEECC
Confidence 456777774 6799999999999999999999999999998543 99999999999999999999999999999999
Q ss_pred eeEe
Q 017126 128 IPTE 131 (377)
Q Consensus 128 ~~~~ 131 (377)
+.+.
T Consensus 79 kh~~ 82 (114)
T cd02986 79 QHMK 82 (114)
T ss_pred cEEE
Confidence 8765
No 60
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.5e-15 Score=123.93 Aligned_cols=121 Identities=27% Similarity=0.529 Sum_probs=97.4
Q ss_pred EEEe-ChhhHHHHHc--CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEE
Q 017126 45 VIEL-DESNFDSAIS--SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (377)
Q Consensus 45 v~~l-~~~~f~~~~~--~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~ 121 (377)
|+.+ ++.+|+..+. ..+.++|.||+.||++|++.+|.|..+++++.+ ..|.+||.++.+..+..+||...||+
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~c~~taa~~gV~amPTF 78 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDECRGTAATNGVNAMPTF 78 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHHhhchhhhcCcccCceE
Confidence 3444 6789999884 446999999999999999999999999999865 89999999999999999999999999
Q ss_pred EEEeCCeeEeecCCCCHHHHHHHHHhhcCCCcee------cCChHHHHHHHHcc
Q 017126 122 KIFMHGIPTEYYGPRKAELLVRYLKKFVAPDVSI------LNSDAEVSDFVENA 169 (377)
Q Consensus 122 ~~~~~g~~~~y~g~~~~~~i~~~~~~~~~~~~~~------i~~~~~~~~~~~~~ 169 (377)
++|++|..++-....++..|.+-+.++...+.-. ....-+|..|+...
T Consensus 79 iff~ng~kid~~qGAd~~gLe~kv~~~~stsaa~~~~~~~~Kgq~dL~~~I~~~ 132 (288)
T KOG0908|consen 79 IFFRNGVKIDQIQGADASGLEEKVAKYASTSAASSGTGDIVKGQMDLKPFIDKV 132 (288)
T ss_pred EEEecCeEeeeecCCCHHHHHHHHHHHhccCcccccCCCcccceehhhhhhhhh
Confidence 9999999997444467888999998887643221 12223566666544
No 61
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.63 E-value=4.7e-15 Score=108.40 Aligned_cols=91 Identities=35% Similarity=0.648 Sum_probs=81.8
Q ss_pred hhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCeeE
Q 017126 51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPT 130 (377)
Q Consensus 51 ~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~ 130 (377)
++|++.++++++++|.||++||++|+.+.+.+.+++.. .+.+.++.+||++++++++++++.++|++++|.+|+.+
T Consensus 1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~ 76 (93)
T cd02947 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE----YPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEV 76 (93)
T ss_pred CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH----CCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEE
Confidence 36788887779999999999999999999999999887 23499999999999999999999999999999999866
Q ss_pred e-ecCCCCHHHHHHHH
Q 017126 131 E-YYGPRKAELLVRYL 145 (377)
Q Consensus 131 ~-y~g~~~~~~i~~~~ 145 (377)
. +.|..+.+.|.+|+
T Consensus 77 ~~~~g~~~~~~l~~~i 92 (93)
T cd02947 77 DRVVGADPKEELEEFL 92 (93)
T ss_pred EEEecCCCHHHHHHHh
Confidence 4 88988888888886
No 62
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.61 E-value=1.1e-14 Score=111.24 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=80.5
Q ss_pred CCEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcch-----------hhHh
Q 017126 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-----------RLAS 111 (377)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-----------~~~~ 111 (377)
..+..++..+|.+.+++++..+|+|+++||++|+.+.|.+.+++++. ++.++.||.+.++ ++.+
T Consensus 6 ~~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~~~~~~~~~~~~~~~ 80 (122)
T TIGR01295 6 KGLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGSFEMSSLNDLTAFRS 80 (122)
T ss_pred ccceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccCcCcccHHHHHHHHH
Confidence 35677889999999999899999999999999999999999999872 2668888887543 5566
Q ss_pred hcC----CCcCCEEEEEeCCeeEe-ecC-CCCHHHHHHHH
Q 017126 112 KQE----IDAFPTLKIFMHGIPTE-YYG-PRKAELLVRYL 145 (377)
Q Consensus 112 ~~~----i~~~P~~~~~~~g~~~~-y~g-~~~~~~i~~~~ 145 (377)
+++ |.++||+++|++|+.+. ..| ..+.++|.+|+
T Consensus 81 ~~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 81 RFGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred HcCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence 665 45699999999999886 567 55688888876
No 63
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.59 E-value=1.4e-14 Score=138.23 Aligned_cols=111 Identities=36% Similarity=0.634 Sum_probs=97.0
Q ss_pred CCCCEEEeChhhHHHHH-cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCC
Q 017126 41 IDGKVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFP 119 (377)
Q Consensus 41 ~~~~v~~l~~~~f~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P 119 (377)
.++.+..|+.++|.+.+ +.++.++|.||++||++|+.+.|.|.++++.+++....+.++.+||+.+. ++. ++|.++|
T Consensus 344 ~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~P 421 (462)
T TIGR01130 344 DEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFP 421 (462)
T ss_pred CCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccC
Confidence 45789999999999987 66789999999999999999999999999999864336999999999875 334 9999999
Q ss_pred EEEEEeCCee---EeecCCCCHHHHHHHHHhhcCCCc
Q 017126 120 TLKIFMHGIP---TEYYGPRKAELLVRYLKKFVAPDV 153 (377)
Q Consensus 120 ~~~~~~~g~~---~~y~g~~~~~~i~~~~~~~~~~~~ 153 (377)
++++|.+|.. ..|.|.++.+.|.+|+.+.....+
T Consensus 422 t~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 422 TIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred EEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCC
Confidence 9999998854 579999999999999999876554
No 64
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.58 E-value=2e-14 Score=108.65 Aligned_cols=94 Identities=18% Similarity=0.227 Sum_probs=80.1
Q ss_pred hHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCe---
Q 017126 52 NFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI--- 128 (377)
Q Consensus 52 ~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~--- 128 (377)
+|.+.+.+...++|.||++||++|+.+.|.+++++.... ++.+..+|.+++++++++|+|.++|++++|++|.
T Consensus 14 ~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~----~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~ 89 (113)
T cd02975 14 EFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSD----KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDG 89 (113)
T ss_pred HHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcC----ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecc
Confidence 355556677788999999999999999999999997752 3899999999999999999999999999999863
Q ss_pred eEeecCCCCHHHHHHHHHhhc
Q 017126 129 PTEYYGPRKAELLVRYLKKFV 149 (377)
Q Consensus 129 ~~~y~g~~~~~~i~~~~~~~~ 149 (377)
.+.+.|.....++.+|+...+
T Consensus 90 ~~~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 90 GIRYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred eEEEEecCchHHHHHHHHHHH
Confidence 235889888888888887654
No 65
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.57 E-value=4.1e-14 Score=109.08 Aligned_cols=115 Identities=15% Similarity=0.195 Sum_probs=96.0
Q ss_pred cccccC-hhhHHhhhcCCCcEEEEEEeC---CChHHHHHHHHHHHHHHHhCCC--cEEEEEeccchhhHHhhcCCCCCCC
Q 017126 254 LSVPIN-QDTLNLLKDDKRKIVLAIVED---ETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSK 327 (377)
Q Consensus 254 ~~~~l~-~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~ 327 (377)
-+.+++ ++.++..|..+..|+++|++. .+.+..+.+++.|+++|+++++ +.|+|+|+.++..+++.||+ +..+
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl-~~~~ 81 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI-GGFG 81 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC-CccC
Confidence 345555 556678898888999999874 3456668899999999999997 89999999999999999999 5678
Q ss_pred CCeEEEEeCCC-CceeccCCCCCCcccchhhHHHHHHHHhcCccccccC
Q 017126 328 LPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGYREGRTEQKKN 375 (377)
Q Consensus 328 ~P~l~i~~~~~-~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~Gkl~~~~~ 375 (377)
+|++++++.++ +|..+ .+++|.++|.+|+++|++|++..-++
T Consensus 82 ~P~v~i~~~~~~KY~~~------~~~~t~e~i~~Fv~~~l~Gkl~~~~~ 124 (130)
T cd02983 82 YPAMVAINFRKMKFATL------KGSFSEDGINEFLRELSYGRGPTLPV 124 (130)
T ss_pred CCEEEEEecccCccccc------cCccCHHHHHHHHHHHHcCCcccccC
Confidence 99999999974 67654 67789999999999999999976554
No 66
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.54 E-value=1.1e-13 Score=114.12 Aligned_cols=86 Identities=17% Similarity=0.339 Sum_probs=74.7
Q ss_pred CCCEEEeChhhHHHHH-cC--CCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcC
Q 017126 42 DGKVIELDESNFDSAI-SS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF 118 (377)
Q Consensus 42 ~~~v~~l~~~~f~~~~-~~--~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~ 118 (377)
-+.+..++..+|...+ +. +.+++|.||++||++|+.+.|.|.++|..+. .+.|++||+++. +..|+|.++
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~----~vkFvkI~ad~~---~~~~~i~~l 153 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP----DTKFVKIISTQC---IPNYPDKNL 153 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC----CCEEEEEEhHHh---HhhCCCCCC
Confidence 4799999999999876 33 3489999999999999999999999999874 389999999754 689999999
Q ss_pred CEEEEEeCCeeEe-ecC
Q 017126 119 PTLKIFMHGIPTE-YYG 134 (377)
Q Consensus 119 P~~~~~~~g~~~~-y~g 134 (377)
||+++|++|+.+. +.|
T Consensus 154 PTlliyk~G~~v~~ivG 170 (192)
T cd02988 154 PTILVYRNGDIVKQFIG 170 (192)
T ss_pred CEEEEEECCEEEEEEeC
Confidence 9999999998774 555
No 67
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.53 E-value=8.8e-14 Score=103.93 Aligned_cols=94 Identities=22% Similarity=0.250 Sum_probs=79.9
Q ss_pred hHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCC--cCCEEEEEeC--C
Q 017126 52 NFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID--AFPTLKIFMH--G 127 (377)
Q Consensus 52 ~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~--~~P~~~~~~~--g 127 (377)
++......++++++.|+++||++|+.+.|.++++|+++++ ++.|+.||+++++++++.+|+. ++|++++++. |
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~---~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~ 80 (103)
T cd02982 4 TFFNYEESGKPLLVLFYNKDDSESEELRERFKEVAKKFKG---KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDG 80 (103)
T ss_pred HHhhhhhcCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC---eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccc
Confidence 3333333368999999999999999999999999999975 4999999999999999999999 9999999998 6
Q ss_pred eeEeecC-CCCHHHHHHHHHhh
Q 017126 128 IPTEYYG-PRKAELLVRYLKKF 148 (377)
Q Consensus 128 ~~~~y~g-~~~~~~i~~~~~~~ 148 (377)
....+.+ ..+.+.|.+|+.+.
T Consensus 81 ~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 81 KKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred cccCCCccccCHHHHHHHHHhh
Confidence 5655544 45899999999764
No 68
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.52 E-value=1.8e-13 Score=106.06 Aligned_cols=97 Identities=19% Similarity=0.262 Sum_probs=79.9
Q ss_pred hhHHHHHcCC-CeEEEEEECCCChhHhhHHHHHH---HHHHHhhcCCCCeEEEEEeCCcc-------------hhhHhhc
Q 017126 51 SNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLD---EAAPILAKLKEPIVIAKVDADKY-------------SRLASKQ 113 (377)
Q Consensus 51 ~~f~~~~~~~-~~~~v~f~~~~C~~C~~~~~~~~---~~a~~~~~~~~~v~~~~vd~~~~-------------~~~~~~~ 113 (377)
+.++.+.+++ ++++|.||++||++|+.+.|.+. .+.+.+.+ ++.+..+|.+.+ .+++++|
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 4566777888 99999999999999999999885 55555543 488999998764 6899999
Q ss_pred CCCcCCEEEEEeC--CeeE-eecCCCCHHHHHHHHHhhcC
Q 017126 114 EIDAFPTLKIFMH--GIPT-EYYGPRKAELLVRYLKKFVA 150 (377)
Q Consensus 114 ~i~~~P~~~~~~~--g~~~-~y~g~~~~~~i~~~~~~~~~ 150 (377)
+|.++|++++|.+ |+.+ .+.|..+.+.+..++.....
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 9999999999987 4666 48999999998888877654
No 69
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=8e-14 Score=128.94 Aligned_cols=108 Identities=41% Similarity=0.739 Sum_probs=98.3
Q ss_pred CEEEeChhhHHHHH-cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEE
Q 017126 44 KVIELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (377)
Q Consensus 44 ~v~~l~~~~f~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~ 122 (377)
.+..++..+|...+ +....|+|.||+|||+||+.+.|+|.+++..++. ...+.++.+||+.+..+|.+++|+++|++.
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~ 223 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDATVHKSLASRLEVRGYPTLK 223 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccchHHHHhhhhcccCCceEE
Confidence 59999999999977 5667899999999999999999999999999976 456999999999999999999999999999
Q ss_pred EEeCCee-Ee-ecCCCCHHHHHHHHHhhcCCC
Q 017126 123 IFMHGIP-TE-YYGPRKAELLVRYLKKFVAPD 152 (377)
Q Consensus 123 ~~~~g~~-~~-y~g~~~~~~i~~~~~~~~~~~ 152 (377)
+|.+|.. .. |.|.|+.+.|.+|+.+.....
T Consensus 224 ~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 224 LFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred EecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 9999877 43 789999999999999888764
No 70
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.49 E-value=1.1e-12 Score=107.85 Aligned_cols=103 Identities=19% Similarity=0.379 Sum_probs=80.3
Q ss_pred CEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc------------------
Q 017126 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK------------------ 105 (377)
Q Consensus 44 ~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~------------------ 105 (377)
.+..++.+.+...--++++++|.||++||+.|+...+.+.++++++.+. .+.+..|+++.
T Consensus 45 ~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~~~~~~~~ 122 (173)
T PRK03147 45 VLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNRYGLTFPV 122 (173)
T ss_pred EeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHHhCCCceE
Confidence 3444555444332235689999999999999999999999999998753 37778888753
Q ss_pred ----chhhHhhcCCCcCCEEEEEe-CCeeEe-ecCCCCHHHHHHHHHhh
Q 017126 106 ----YSRLASKQEIDAFPTLKIFM-HGIPTE-YYGPRKAELLVRYLKKF 148 (377)
Q Consensus 106 ----~~~~~~~~~i~~~P~~~~~~-~g~~~~-y~g~~~~~~i~~~~~~~ 148 (377)
+..+++.|++.++|+++++. +|+.+. +.|..+.+.+.+++.+.
T Consensus 123 ~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 123 AIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred EECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 45788999999999999986 577664 89999999999988753
No 71
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.47 E-value=7.7e-13 Score=94.32 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=70.5
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCeeEeecCCCCHHHHH
Q 017126 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLV 142 (377)
Q Consensus 63 ~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~i~ 142 (377)
.+..||++||++|+...|.+.+++..++. .+.+..||+++++++++++++.++|++++ +|+ ..+.|..+.+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~-~~~~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD---AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD-VEFIGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC---ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE-EEEecCCCHHHHH
Confidence 36789999999999999999999988753 38999999999999999999999999986 666 4788988999999
Q ss_pred HHHHhh
Q 017126 143 RYLKKF 148 (377)
Q Consensus 143 ~~~~~~ 148 (377)
+++.+.
T Consensus 76 ~~l~~~ 81 (82)
T TIGR00411 76 EAIKKR 81 (82)
T ss_pred HHHHhh
Confidence 888764
No 72
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.46 E-value=5.1e-13 Score=100.17 Aligned_cols=105 Identities=10% Similarity=0.148 Sum_probs=90.5
Q ss_pred ccccChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHh---CCC-cEEEEEeccchhhHHhhcCCCCCCCCCe
Q 017126 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASA---NRE-LVFCYVGIKQFADFADTFEANKKSKLPK 330 (377)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~---~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~ 330 (377)
|+++++++...+...+.|..++++ +.+..+.+.+.++.+|++ +++ +.|+++|+.++...++.||+ +..+.|+
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f---~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl-~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH---DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGK-TPADLPV 76 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe---cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCC-CHhHCCE
Confidence 578999999999999999998888 445567889999999999 998 99999999998889999999 5668999
Q ss_pred EEEEeCCC--CceeccCCCCCCcccchhhHHHHHHHHhcCc
Q 017126 331 MVVWDGNE--NYLTVIGSESIDEEDQGSQISRFLEGYREGR 369 (377)
Q Consensus 331 l~i~~~~~--~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~Gk 369 (377)
++|.+.++ +|.++ .+++|.++|++|+++|++|+
T Consensus 77 i~i~~~~~~~Ky~~~------~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 77 IAIDSFRHMYLFPDF------EDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEEEcchhcCcCCCC------ccccCHHHHHHHHHHHhcCC
Confidence 99999964 44322 56788999999999999996
No 73
>PTZ00062 glutaredoxin; Provisional
Probab=99.46 E-value=4e-12 Score=105.02 Aligned_cols=108 Identities=9% Similarity=0.123 Sum_probs=86.0
Q ss_pred ChhhHHHHHcCC-CeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCC
Q 017126 49 DESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (377)
Q Consensus 49 ~~~~f~~~~~~~-~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g 127 (377)
+.+.|++.++.+ +.++++|+|+||++|+.+.|.+.++++++.+ +.|+.||.+ |+|.++|++++|++|
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~----~~F~~V~~d--------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS----LEFYVVNLA--------DANNEYGVFEFYQNS 72 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC----cEEEEEccc--------cCcccceEEEEEECC
Confidence 467888888654 8899999999999999999999999998743 999999976 999999999999999
Q ss_pred eeEe-ecCCCCHHHHHHHHHhhcCCCceecCChHHHHHHHHccC
Q 017126 128 IPTE-YYGPRKAELLVRYLKKFVAPDVSILNSDAEVSDFVENAG 170 (377)
Q Consensus 128 ~~~~-y~g~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 170 (377)
+.+. +.| .++..+..++.++..+..... ..+.+++++++++
T Consensus 73 ~~i~r~~G-~~~~~~~~~~~~~~~~~~~~~-~~~~v~~li~~~~ 114 (204)
T PTZ00062 73 QLINSLEG-CNTSTLVSFIRGWAQKGSSED-TVEKIERLIRNHK 114 (204)
T ss_pred EEEeeeeC-CCHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhcCC
Confidence 9886 555 459999999998887644321 1123455555543
No 74
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.44 E-value=8.9e-13 Score=99.17 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=68.2
Q ss_pred ChhhHHHHHcC--CCeEEEEEEC-------CCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc-------chhhHhh
Q 017126 49 DESNFDSAISS--FDYILVDFYA-------PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------YSRLASK 112 (377)
Q Consensus 49 ~~~~f~~~~~~--~~~~~v~f~~-------~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~~~~~~~ 112 (377)
+.++|.+.+.. +++++|.||| +||++|+.+.|.+++++..+.+ ++.|+.||+++ +.++..+
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~---~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE---DCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC---CCEEEEEEcCCcccccCcchhhHhc
Confidence 46778888854 6899999999 9999999999999999998763 38899999976 4589999
Q ss_pred cCCC-cCCEEEEEeCCeeE
Q 017126 113 QEID-AFPTLKIFMHGIPT 130 (377)
Q Consensus 113 ~~i~-~~P~~~~~~~g~~~ 130 (377)
++|. ++||+++|++|+.+
T Consensus 85 ~~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred cCcccCCCEEEEEcCCcee
Confidence 9998 99999999887554
No 75
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.36 E-value=1.4e-11 Score=115.41 Aligned_cols=89 Identities=18% Similarity=0.244 Sum_probs=72.9
Q ss_pred cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEE----------------------------EeCCcchhh
Q 017126 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAK----------------------------VDADKYSRL 109 (377)
Q Consensus 58 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~----------------------------vd~~~~~~~ 109 (377)
+++++++|.|||+||++|+...|.+.+++++++.. ++.+.. |+++.+..+
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 47799999999999999999999999999987532 244433 344556778
Q ss_pred HhhcCCCcCCEEEEE-eCCeeEe-ecCCCCHHHHHHHHHhh
Q 017126 110 ASKQEIDAFPTLKIF-MHGIPTE-YYGPRKAELLVRYLKKF 148 (377)
Q Consensus 110 ~~~~~i~~~P~~~~~-~~g~~~~-y~g~~~~~~i~~~~~~~ 148 (377)
++.|+|.++|+.+++ ++|+.+. +.|..+.+.|.++++..
T Consensus 132 ak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 132 AQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 999999999999776 5788775 89999999999999844
No 76
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.33 E-value=3.4e-11 Score=116.18 Aligned_cols=101 Identities=21% Similarity=0.376 Sum_probs=81.4
Q ss_pred CEEEe-ChhhHHHHH----cCCCeEEEEEECCCChhHhhHHHHH---HHHHHHhhcCCCCeEEEEEeCCcc----hhhHh
Q 017126 44 KVIEL-DESNFDSAI----SSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADKY----SRLAS 111 (377)
Q Consensus 44 ~v~~l-~~~~f~~~~----~~~~~~~v~f~~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~----~~~~~ 111 (377)
.-..+ +.+++++.+ .++++++|+||++||++|+.+++.. .++.+.++ ++.+.++|++++ .++++
T Consensus 453 ~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~~~~~l~~ 528 (571)
T PRK00293 453 NFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNAEDVALLK 528 (571)
T ss_pred CceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCChhhHHHHH
Confidence 33444 467777766 3468999999999999999998875 56666664 388999999753 68899
Q ss_pred hcCCCcCCEEEEEe-CCeeE---eecCCCCHHHHHHHHHhh
Q 017126 112 KQEIDAFPTLKIFM-HGIPT---EYYGPRKAELLVRYLKKF 148 (377)
Q Consensus 112 ~~~i~~~P~~~~~~-~g~~~---~y~g~~~~~~i~~~~~~~ 148 (377)
+|++.++|++++|. +|+.+ ++.|..+.+++.+++++.
T Consensus 529 ~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 529 HYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred HcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 99999999999997 67763 478999999999998874
No 77
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.32 E-value=1.6e-11 Score=104.24 Aligned_cols=95 Identities=19% Similarity=0.226 Sum_probs=77.0
Q ss_pred EeChhhHHHHHcCCCeE-EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEe
Q 017126 47 ELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM 125 (377)
Q Consensus 47 ~l~~~~f~~~~~~~~~~-~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 125 (377)
.|+..+.+.+-+..+++ ++.||++||++|+.+.|.+.+++... +.+.+..+|.+++++++++|+|.++|+++++.
T Consensus 119 ~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~----~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~ 194 (215)
T TIGR02187 119 GLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN----DKILGEMIEANENPDLAEKYGVMSVPKIVINK 194 (215)
T ss_pred CCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc----CceEEEEEeCCCCHHHHHHhCCccCCEEEEec
Confidence 44555555544434454 44499999999999999999988763 24889999999999999999999999999998
Q ss_pred CCeeEeecCCCCHHHHHHHHHh
Q 017126 126 HGIPTEYYGPRKAELLVRYLKK 147 (377)
Q Consensus 126 ~g~~~~y~g~~~~~~i~~~~~~ 147 (377)
+|.. +.|....+.+.+|+.+
T Consensus 195 ~~~~--~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 195 GVEE--FVGAYPEEQFLEYILS 214 (215)
T ss_pred CCEE--EECCCCHHHHHHHHHh
Confidence 8864 8899999999999865
No 78
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.32 E-value=9.2e-11 Score=97.11 Aligned_cols=87 Identities=15% Similarity=0.236 Sum_probs=67.9
Q ss_pred cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcch-----------------------hhHhhcC
Q 017126 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-----------------------RLASKQE 114 (377)
Q Consensus 58 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-----------------------~~~~~~~ 114 (377)
.++++++|.||++||++|++..|.+.++++. .+.+..|+.++++ .+++.|+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 3678999999999999999999999888642 2667777764432 2455789
Q ss_pred CCcCCEEEEEe-CCeeEe-ecCCCCHHHHHHHHHhhcC
Q 017126 115 IDAFPTLKIFM-HGIPTE-YYGPRKAELLVRYLKKFVA 150 (377)
Q Consensus 115 i~~~P~~~~~~-~g~~~~-y~g~~~~~~i~~~~~~~~~ 150 (377)
+.++|+.+++. +|+... +.|..+.+.+.+++...+.
T Consensus 140 v~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 140 VYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 99999777775 687664 8899999999888877653
No 79
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.31 E-value=5.3e-12 Score=95.87 Aligned_cols=92 Identities=17% Similarity=0.252 Sum_probs=64.3
Q ss_pred hhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcch-hhHhhcCCCc--CCEEEEEe-C
Q 017126 51 SNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-RLASKQEIDA--FPTLKIFM-H 126 (377)
Q Consensus 51 ~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-~~~~~~~i~~--~P~~~~~~-~ 126 (377)
+.+..+..++++++|.||++||++|+.+.|.+.+.+..... . ..|..||.+.++ ...+.|++.+ +|++++|. +
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~--~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-S--HNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-c--CcEEEEEecCCCCchhhhcccCCCccceEEEECCC
Confidence 33444557789999999999999999999999998775432 2 334455555443 4567899986 99999996 7
Q ss_pred CeeEe----ecCCCCHHHHHHHH
Q 017126 127 GIPTE----YYGPRKAELLVRYL 145 (377)
Q Consensus 127 g~~~~----y~g~~~~~~i~~~~ 145 (377)
|+.+. ..|.++.+.....+
T Consensus 87 Gk~~~~~~~~~~~~~~~~f~~~~ 109 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYFYSSA 109 (117)
T ss_pred CCCchhhccCCCCccccccCCCH
Confidence 76542 45555554444443
No 80
>PHA02125 thioredoxin-like protein
Probab=99.30 E-value=2.8e-11 Score=84.25 Aligned_cols=68 Identities=29% Similarity=0.518 Sum_probs=55.2
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCeeE-eecCC-CCHHHH
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPT-EYYGP-RKAELL 141 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~-~y~g~-~~~~~i 141 (377)
++.||++||++|+.+.|.+.+++ +.++.||++++++++++|+|.++||++ +|+.+ .+.|. .+..+|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l 69 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAEL 69 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHH
Confidence 78999999999999999987542 457899999999999999999999998 67666 47774 344555
Q ss_pred HH
Q 017126 142 VR 143 (377)
Q Consensus 142 ~~ 143 (377)
.+
T Consensus 70 ~~ 71 (75)
T PHA02125 70 KE 71 (75)
T ss_pred HH
Confidence 44
No 81
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.27 E-value=2.9e-11 Score=84.26 Aligned_cols=73 Identities=18% Similarity=0.259 Sum_probs=59.5
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCeeEeecCC-CCHHHHH
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGP-RKAELLV 142 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~-~~~~~i~ 142 (377)
-|.||++||++|+.+.|.++++++++.. ++.+..|| +.+.+.+|++.++|++++ +|+.+ +.|. .+.+.+.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~---~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~-~~G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI---DAEFEKVT---DMNEILEAGVTATPGVAV--DGELV-IMGKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC---CeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE-EEeccCCHHHHH
Confidence 3789999999999999999999998743 48888887 455688999999999999 88766 7775 3457777
Q ss_pred HHH
Q 017126 143 RYL 145 (377)
Q Consensus 143 ~~~ 145 (377)
+++
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 665
No 82
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.27 E-value=1.3e-10 Score=92.19 Aligned_cols=86 Identities=17% Similarity=0.219 Sum_probs=63.9
Q ss_pred cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc------------hhhH-hhc---CCCcCCEE
Q 017126 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY------------SRLA-SKQ---EIDAFPTL 121 (377)
Q Consensus 58 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------~~~~-~~~---~i~~~P~~ 121 (377)
..+++.+|.||++||++|++..|.+.++++++. +.+..|+.++. .... ..+ ++.++|+.
T Consensus 48 ~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt 122 (153)
T TIGR02738 48 NQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPAT 122 (153)
T ss_pred hcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeE
Confidence 345677999999999999999999999998762 44444554432 2333 345 78999999
Q ss_pred EEEeC-Ce-eE-eecCCCCHHHHHHHHHhh
Q 017126 122 KIFMH-GI-PT-EYYGPRKAELLVRYLKKF 148 (377)
Q Consensus 122 ~~~~~-g~-~~-~y~g~~~~~~i~~~~~~~ 148 (377)
+++.. |. .. .+.|..+.+.+.+.+.+.
T Consensus 123 ~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 123 FLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 99965 44 34 378999999988877654
No 83
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.25 E-value=3.3e-11 Score=91.40 Aligned_cols=88 Identities=26% Similarity=0.399 Sum_probs=64.1
Q ss_pred cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc--------------------hhhHhhcCCCc
Q 017126 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY--------------------SRLASKQEIDA 117 (377)
Q Consensus 58 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--------------------~~~~~~~~i~~ 117 (377)
.++++.++.|+++||++|+.+.+++.+..........++.+..++++.. .++.+.++|.+
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g 82 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG 82 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc
Confidence 3568999999999999999999999875543333223477788887643 35889999999
Q ss_pred CCEEEEEe-CCeeE-eecCCCCHHHHHHHH
Q 017126 118 FPTLKIFM-HGIPT-EYYGPRKAELLVRYL 145 (377)
Q Consensus 118 ~P~~~~~~-~g~~~-~y~g~~~~~~i~~~~ 145 (377)
+|+++++. +|+.+ .+.|..+.+++..++
T Consensus 83 tPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 83 TPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp SSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred cCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999996 68876 489999999988764
No 84
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.24 E-value=2e-10 Score=87.30 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=90.5
Q ss_pred EEeChhhHHHHHcCCCeEEEEEECC--CChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEE
Q 017126 46 IELDESNFDSAISSFDYILVDFYAP--WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (377)
Q Consensus 46 ~~l~~~~f~~~~~~~~~~~v~f~~~--~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~ 123 (377)
..++..+++..+..++..++.|-.+ .++.+....-.+.++++++.+ .++.+++||++++++++.+|||.++||+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~~v~~akVDiD~~~~LA~~fgV~siPTLl~ 97 (132)
T PRK11509 20 TPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--YTWQVAIADLEQSEAIGDRFGVFRFPATLV 97 (132)
T ss_pred CccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--CceEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence 3456688999998878777777643 578888999999999999853 249999999999999999999999999999
Q ss_pred EeCCeeEe-ecCCCCHHHHHHHHHhhcCCC
Q 017126 124 FMHGIPTE-YYGPRKAELLVRYLKKFVAPD 152 (377)
Q Consensus 124 ~~~g~~~~-y~g~~~~~~i~~~~~~~~~~~ 152 (377)
|++|+.+. ..|.++.+.+.+|+.+++..+
T Consensus 98 FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 98 FTGGNYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred EECCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 99999986 889999999999999988754
No 85
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.22 E-value=6e-11 Score=90.38 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=71.7
Q ss_pred ChhhHHHHHcCCCeEEEEEECCCChhHhhHHHH-HH--HHHHHhhcCCCCeEEEEEeCCcchhhHhh--------cCCCc
Q 017126 49 DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQ-LD--EAAPILAKLKEPIVIAKVDADKYSRLASK--------QEIDA 117 (377)
Q Consensus 49 ~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~-~~--~~a~~~~~~~~~v~~~~vd~~~~~~~~~~--------~~i~~ 117 (377)
+++.+..+.+++++++|.|+++||+.|+.+.+. |. +++..+++ ++.+.+||.++++++++. +++.+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREERPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC
Confidence 567788888999999999999999999999874 33 45665543 499999999998888763 58999
Q ss_pred CCEEEEEeC-CeeEe---ec-C--CCCHHHHHHHHHh
Q 017126 118 FPTLKIFMH-GIPTE---YY-G--PRKAELLVRYLKK 147 (377)
Q Consensus 118 ~P~~~~~~~-g~~~~---y~-g--~~~~~~i~~~~~~ 147 (377)
+|+++++.. |+++. |. + ..+...+.+++.+
T Consensus 81 ~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 81 WPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred CCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence 999999965 76653 32 2 2344555555543
No 86
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.22 E-value=7e-10 Score=92.11 Aligned_cols=163 Identities=25% Similarity=0.338 Sum_probs=123.5
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeC--CeeEeecCC-CCHHHHHHHHHhhcCCCc
Q 017126 77 RLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH--GIPTEYYGP-RKAELLVRYLKKFVAPDV 153 (377)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~--g~~~~y~g~-~~~~~i~~~~~~~~~~~~ 153 (377)
.....|.++|+.+.+. +.|+.+. ++++|+++++.. |++++|++ +++..|.|. .+.+.|.+|+....-|.+
T Consensus 7 ~~~~~f~~~A~~~~~~---~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v 79 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGD---YQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLV 79 (184)
T ss_dssp HHHHHHHHHHHHHTTT---SEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSC
T ss_pred HHHHHHHHHHHhCcCC---cEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccc
Confidence 4567899999998753 8899887 788999999999 99999998 456789998 899999999999999999
Q ss_pred eecCChHHHHHHHHccCCcccEEEeecC-Ch-------HHHHHHHHHhhhhhHHHHhh-cchhhhhhhcCCC--CCCeEE
Q 017126 154 SILNSDAEVSDFVENAGTFFPLFIGFGL-DE-------SVMSNLALKYKKKAWFAVAK-DFSEDTMVLYDFD--KVPALV 222 (377)
Q Consensus 154 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~-~~-------~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~v~--~~P~l~ 222 (377)
.+++.+ .+..+...... ++++.+.. +. ..++.+|..+++...|..+. +....++..++++ ..|+++
T Consensus 80 ~~~t~~-n~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~~~i~~~~~P~~v 156 (184)
T PF13848_consen 80 PELTPE-NFEKLFSSPKP--PVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKYFGIDEDDLPALV 156 (184)
T ss_dssp EEESTT-HHHHHHSTSSE--EEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHHTTTTTSSSSEEE
T ss_pred cccchh-hHHHHhcCCCc--eEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHHcCCCCccCCEEE
Confidence 999865 67777766432 23444443 22 24667888888876666553 2346688899998 789999
Q ss_pred EEcCCCCCc-ccccCCCCHHHHHHHHHh
Q 017126 223 ALQPSYNEH-NIFYGPFDEEFLEEFIKQ 249 (377)
Q Consensus 223 ~~~~~~~~~-~~~~g~~~~~~l~~fi~~ 249 (377)
++....+.. ..+.++++.+.|.+|++.
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 157 IFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp EEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred EEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 998654432 224788999999999863
No 87
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.19 E-value=6.1e-10 Score=91.26 Aligned_cols=86 Identities=22% Similarity=0.318 Sum_probs=67.1
Q ss_pred cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeC-----------------------CcchhhHhhcC
Q 017126 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA-----------------------DKYSRLASKQE 114 (377)
Q Consensus 58 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~-----------------------~~~~~~~~~~~ 114 (377)
.++++++|.||++||++|+...|.+.++++. ++.+..|+. +.+..+.+.|+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~ 134 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLG 134 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcC
Confidence 4678999999999999999999999888753 144444443 33445677899
Q ss_pred CCcCCEEEEE-eCCeeEe-ecCCCCHHHHHHHHHhhc
Q 017126 115 IDAFPTLKIF-MHGIPTE-YYGPRKAELLVRYLKKFV 149 (377)
Q Consensus 115 i~~~P~~~~~-~~g~~~~-y~g~~~~~~i~~~~~~~~ 149 (377)
+.++|+.+++ ++|+... +.|..+.+.+.+++.+++
T Consensus 135 v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 135 VYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 9999976666 5787664 889999999999998775
No 88
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.13 E-value=3.8e-10 Score=88.13 Aligned_cols=73 Identities=27% Similarity=0.395 Sum_probs=59.2
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc------------------------hhhHhhcC
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY------------------------SRLASKQE 114 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~------------------------~~~~~~~~ 114 (377)
++++++|.||++||++|+...|.+.++.+.+.+.+.++.+..|+.+.+ ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 568999999999999999999999999998876434566666666533 35788999
Q ss_pred CCcCCEEEEEe-CCeeEe
Q 017126 115 IDAFPTLKIFM-HGIPTE 131 (377)
Q Consensus 115 i~~~P~~~~~~-~g~~~~ 131 (377)
|.++|+++++. +|+.+.
T Consensus 97 v~~~P~~~lid~~G~i~~ 114 (131)
T cd03009 97 IEGIPTLIILDADGEVVT 114 (131)
T ss_pred CCCCCEEEEECCCCCEEc
Confidence 99999999997 566553
No 89
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.13 E-value=5.7e-10 Score=97.41 Aligned_cols=87 Identities=20% Similarity=0.172 Sum_probs=70.6
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc-----------chhhHhhcCCCcCCEEEEEeC-
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-----------YSRLASKQEIDAFPTLKIFMH- 126 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-----------~~~~~~~~~i~~~P~~~~~~~- 126 (377)
.+++++|.||++||++|+...|.+.++++++. +.+..|+.+. +..+++++||.++|+++++.+
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~ 239 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPD 239 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECC
Confidence 46899999999999999999999999998863 4444455433 457899999999999999986
Q ss_pred CeeE-e-ecCCCCHHHHHHHHHhhcC
Q 017126 127 GIPT-E-YYGPRKAELLVRYLKKFVA 150 (377)
Q Consensus 127 g~~~-~-y~g~~~~~~i~~~~~~~~~ 150 (377)
|+.+ . ..|..+.+.|.+.+.....
T Consensus 240 ~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 240 PNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 5444 3 6799999999998877655
No 90
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.11 E-value=2.6e-10 Score=77.68 Aligned_cols=57 Identities=21% Similarity=0.364 Sum_probs=50.9
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEE
Q 017126 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (377)
Q Consensus 63 ~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~ 123 (377)
-++.|+++||++|+.+.+.+++++... +++.+..+|.++++++++++++.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 367899999999999999999997653 249999999999999999999999999865
No 91
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=99.09 E-value=1.4e-09 Score=81.39 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=78.8
Q ss_pred cccChhhHHhhhcCCCcEEEEEEeC---CChHHHHHHHHHHHHHHHhCC-C-cEEEEEeccchhhHHhhcCCCCCCC--C
Q 017126 256 VPINQDTLNLLKDDKRKIVLAIVED---ETEEKSQKLVTTLKAAASANR-E-LVFCYVGIKQFADFADTFEANKKSK--L 328 (377)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~l~~~a~~~~-~-~~f~~vd~~~~~~~~~~~gi~~~~~--~ 328 (377)
.+++.++...+. ..|.++++++. .+.+..+.+++.++.+|++++ + +.|+++|..++...++.||+ +..+ .
T Consensus 2 ~~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl-~~~~~~~ 78 (111)
T cd03073 2 GHRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGL-DFSGGEK 78 (111)
T ss_pred CeeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCC-CcccCCC
Confidence 356677777664 35666666543 245666889999999999999 6 99999999998889999999 5556 9
Q ss_pred CeEEEEeCCC-CceeccCCCCCCccc-chhhHHHHHHHHh
Q 017126 329 PKMVVWDGNE-NYLTVIGSESIDEED-QGSQISRFLEGYR 366 (377)
Q Consensus 329 P~l~i~~~~~-~~~~~~~~~~~~~~~-t~e~i~~Fi~~~~ 366 (377)
|+++|.+.++ +|. + .+++ |.++|.+|+++|+
T Consensus 79 P~~~i~~~~~~KY~-~------~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 79 PVVAIRTAKGKKYV-M------EEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CEEEEEeCCCCccC-C------CcccCCHHHHHHHHHHhC
Confidence 9999999754 443 2 5567 8999999999874
No 92
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.09 E-value=9.7e-10 Score=85.33 Aligned_cols=78 Identities=22% Similarity=0.329 Sum_probs=60.7
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEe-----------------------CCcchhhHhhcCC
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-----------------------ADKYSRLASKQEI 115 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd-----------------------~~~~~~~~~~~~i 115 (377)
++++++|.||++||++|+...|.+.++++... +.+..|+ ++.+..+++.|++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v 98 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR-----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGV 98 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCC
Confidence 46899999999999999999999999987641 4444444 4455678889999
Q ss_pred CcCCEEEEE-eCCeeEe-ecCCCCHHHH
Q 017126 116 DAFPTLKIF-MHGIPTE-YYGPRKAELL 141 (377)
Q Consensus 116 ~~~P~~~~~-~~g~~~~-y~g~~~~~~i 141 (377)
.++|+.+++ ++|+... +.|..+.+.|
T Consensus 99 ~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 99 YGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCCeEEEECCCceEEEEEeccCChHhc
Confidence 999966666 5787664 8898876654
No 93
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=9e-10 Score=88.51 Aligned_cols=90 Identities=22% Similarity=0.436 Sum_probs=77.7
Q ss_pred cCCCCCEEEe-ChhhHHHHH--cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCC
Q 017126 39 FKIDGKVIEL-DESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEI 115 (377)
Q Consensus 39 ~~~~~~v~~l-~~~~f~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i 115 (377)
+...+.+..+ +.+.++..+ ++...|+|.|++.|.+.|.++.|.|.+++.++.. +...||+||....++.+++|+|
T Consensus 120 y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~--~~lkFGkvDiGrfpd~a~kfri 197 (265)
T KOG0914|consen 120 YSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN--NLLKFGKVDIGRFPDVAAKFRI 197 (265)
T ss_pred cCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC--CCCcccceeeccCcChHHheee
Confidence 3445688888 677777777 4556999999999999999999999999998864 4699999999999999999988
Q ss_pred C------cCCEEEEEeCCeeE
Q 017126 116 D------AFPTLKIFMHGIPT 130 (377)
Q Consensus 116 ~------~~P~~~~~~~g~~~ 130 (377)
. ..||+++|++|+.+
T Consensus 198 s~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 198 SLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred ccCcccccCCeEEEEccchhh
Confidence 5 58999999999765
No 94
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.05 E-value=1e-09 Score=85.77 Aligned_cols=73 Identities=23% Similarity=0.375 Sum_probs=58.3
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcch-------------------------hhHhhc
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-------------------------RLASKQ 113 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-------------------------~~~~~~ 113 (377)
++++++|.||++||++|+...|.+.++++.+++...++.+..|+++..+ .+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 5699999999999999999999999999988754234777777765432 456779
Q ss_pred CCCcCCEEEEEe-CCeeEe
Q 017126 114 EIDAFPTLKIFM-HGIPTE 131 (377)
Q Consensus 114 ~i~~~P~~~~~~-~g~~~~ 131 (377)
+|.++|+++++. +|+.+.
T Consensus 96 ~v~~iPt~~lid~~G~iv~ 114 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVT 114 (132)
T ss_pred CCCCCCEEEEECCCCCEEc
Confidence 999999999997 566554
No 95
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.05 E-value=2.1e-09 Score=80.05 Aligned_cols=96 Identities=19% Similarity=0.373 Sum_probs=74.8
Q ss_pred HHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCC--CC
Q 017126 263 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN--EN 339 (377)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~--~~ 339 (377)
+......+.|++++|+.. .....+.+.+.++++|+++++ +.|+++|+.+++++++.+|+ ...+.|++++++.+ ++
T Consensus 5 ~~~~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i-~~~~~P~~~~~~~~~~~k 82 (103)
T cd02982 5 FFNYEESGKPLLVLFYNK-DDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGL-KEEDLPVIAIINLSDGKK 82 (103)
T ss_pred HhhhhhcCCCEEEEEEcC-ChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCC-ChhhCCEEEEEecccccc
Confidence 333333357888888753 344668889999999999988 99999999999999999999 44599999999994 34
Q ss_pred ceeccCCCCCCcccchhhHHHHHHHHh
Q 017126 340 YLTVIGSESIDEEDQGSQISRFLEGYR 366 (377)
Q Consensus 340 ~~~~~~~~~~~~~~t~e~i~~Fi~~~~ 366 (377)
|... .+.++.++|.+|+++++
T Consensus 83 ~~~~------~~~~~~~~l~~fi~~~~ 103 (103)
T cd02982 83 YLMP------EEELTAESLEEFVEDFL 103 (103)
T ss_pred cCCC------ccccCHHHHHHHHHhhC
Confidence 4432 33468999999999874
No 96
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.04 E-value=1.4e-09 Score=83.90 Aligned_cols=90 Identities=22% Similarity=0.299 Sum_probs=66.3
Q ss_pred ChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEe---------------------CCcch
Q 017126 49 DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD---------------------ADKYS 107 (377)
Q Consensus 49 ~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd---------------------~~~~~ 107 (377)
+.+.+.....++++++|.||++||++|+...|.+.++++.+. +....+| ++.+.
T Consensus 9 ~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 83 (123)
T cd03011 9 DGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-----VVSVALRSGDDGAVARFMQKKGYGFPVINDPDG 83 (123)
T ss_pred CCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-----EEEEEccCCCHHHHHHHHHHcCCCccEEECCCc
Confidence 333444433455899999999999999999999999987642 2222222 23456
Q ss_pred hhHhhcCCCcCCEEEEEeCCeeE-eecCCCCHHHHHH
Q 017126 108 RLASKQEIDAFPTLKIFMHGIPT-EYYGPRKAELLVR 143 (377)
Q Consensus 108 ~~~~~~~i~~~P~~~~~~~g~~~-~y~g~~~~~~i~~ 143 (377)
.+++.|+|.++|+++++.+|... .+.|..+.+.|.+
T Consensus 84 ~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 84 VISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred HHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 79999999999999999876533 3788888888765
No 97
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.03 E-value=2.6e-09 Score=78.27 Aligned_cols=66 Identities=30% Similarity=0.493 Sum_probs=54.9
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcch-------------------------hhHhhcC
Q 017126 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-------------------------RLASKQE 114 (377)
Q Consensus 60 ~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-------------------------~~~~~~~ 114 (377)
+++++|+||++||++|++..|.+.++.+.+++ +.++.+..|+++++. .+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 47999999999999999999999999999985 556999999987652 3777889
Q ss_pred CCcCCEEEEEeC
Q 017126 115 IDAFPTLKIFMH 126 (377)
Q Consensus 115 i~~~P~~~~~~~ 126 (377)
|.++|+++++..
T Consensus 80 i~~iP~~~lld~ 91 (95)
T PF13905_consen 80 INGIPTLVLLDP 91 (95)
T ss_dssp -TSSSEEEEEET
T ss_pred CCcCCEEEEECC
Confidence 999999999975
No 98
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.03 E-value=9e-11 Score=95.64 Aligned_cols=105 Identities=26% Similarity=0.485 Sum_probs=95.0
Q ss_pred CCCEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEE
Q 017126 42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTL 121 (377)
Q Consensus 42 ~~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~ 121 (377)
...+..++++|+...++ .-|++.|++|||+.|+.+.|.|...+.--.+. .+.++.||.+.|+.+.-+|-+...|+|
T Consensus 23 ~s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL--~v~va~VDvt~npgLsGRF~vtaLptI 98 (248)
T KOG0913|consen 23 SSKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLDL--GVKVAKVDVTTNPGLSGRFLVTALPTI 98 (248)
T ss_pred cceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCCC--ceeEEEEEEEeccccceeeEEEecceE
Confidence 34899999999999875 67899999999999999999999999876654 599999999999999999999999999
Q ss_pred EEEeCCeeEeecCCCCHHHHHHHHHhhcC
Q 017126 122 KIFMHGIPTEYYGPRKAELLVRYLKKFVA 150 (377)
Q Consensus 122 ~~~~~g~~~~y~g~~~~~~i~~~~~~~~~ 150 (377)
+-.++|.--+|.|.|+..++++|+...-.
T Consensus 99 YHvkDGeFrrysgaRdk~dfisf~~~r~w 127 (248)
T KOG0913|consen 99 YHVKDGEFRRYSGARDKNDFISFEEHREW 127 (248)
T ss_pred EEeeccccccccCcccchhHHHHHHhhhh
Confidence 99999999999999999999999865543
No 99
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.03 E-value=2.3e-09 Score=76.90 Aligned_cols=77 Identities=14% Similarity=0.212 Sum_probs=62.9
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCeeEeecCCCCH
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKA 138 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~ 138 (377)
++..-+..|+++||++|....+.+.+++.... ++.+..+|.++.++++++|+|.++|++++ +|+.+ +.|..+.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~-~~G~~~~ 83 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELF-GFGRMTL 83 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEE-EeCCCCH
Confidence 33567888999999999999999999997653 39999999999999999999999999975 77644 4575555
Q ss_pred HHHH
Q 017126 139 ELLV 142 (377)
Q Consensus 139 ~~i~ 142 (377)
++++
T Consensus 84 ~e~~ 87 (89)
T cd03026 84 EEIL 87 (89)
T ss_pred HHHh
Confidence 5543
No 100
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.01 E-value=1.3e-08 Score=84.41 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=58.6
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEe-------------C-----CcchhhHhhcCCCcCCE
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-------------A-----DKYSRLASKQEIDAFPT 120 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd-------------~-----~~~~~~~~~~~i~~~P~ 120 (377)
++++++|.||++||+.|+...|.+.++.+.. +.++.+...+ . ....++++.|++.++|+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~ 149 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY 149 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence 5689999999999999999999999987643 2224333311 0 11346778899999999
Q ss_pred EEEEeCCeeEeecCC-CCHHHHHHHHHh
Q 017126 121 LKIFMHGIPTEYYGP-RKAELLVRYLKK 147 (377)
Q Consensus 121 ~~~~~~g~~~~y~g~-~~~~~i~~~~~~ 147 (377)
.+++.....+.+.|. .+.+.+.+.++.
T Consensus 150 ~~lID~~G~I~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 150 GVLLDQDGKIRAKGLTNTREHLESLLEA 177 (189)
T ss_pred EEEECCCCeEEEccCCCCHHHHHHHHHH
Confidence 888865334445554 344566666654
No 101
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.01 E-value=3.5e-09 Score=82.95 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=60.1
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcC-----CCCeEEEEEeCCcch-------------------------h
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL-----KEPIVIAKVDADKYS-------------------------R 108 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~-----~~~v~~~~vd~~~~~-------------------------~ 108 (377)
++++++|+|||+||++|++..|.+.++.+++++. ..++.+..|+.+.+. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 5699999999999999999999999999887653 235888888865431 4
Q ss_pred hHhhcCCCcCCEEEEEeC-CeeEeecC
Q 017126 109 LASKQEIDAFPTLKIFMH-GIPTEYYG 134 (377)
Q Consensus 109 ~~~~~~i~~~P~~~~~~~-g~~~~y~g 134 (377)
++++|++.++|+.+++.. |+.+.-.|
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~~~ 130 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAANA 130 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEeeCh
Confidence 677889999999999974 66664433
No 102
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.98 E-value=3e-09 Score=80.69 Aligned_cols=74 Identities=24% Similarity=0.459 Sum_probs=63.2
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc-----------------------hhhHhhcCC
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-----------------------SRLASKQEI 115 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~~~i 115 (377)
.+++++|.||++||++|+...+.+.++.+.+.+ .++.++.|+++.+ ..+++.|++
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKD--DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV 95 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc
Confidence 368999999999999999999999999998852 3599999999886 788999999
Q ss_pred CcCCEEEEEe-CCeeEe-ecC
Q 017126 116 DAFPTLKIFM-HGIPTE-YYG 134 (377)
Q Consensus 116 ~~~P~~~~~~-~g~~~~-y~g 134 (377)
.++|+++++. +|+.+. |.|
T Consensus 96 ~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 96 RGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred CccceEEEECCCCcEEEEecC
Confidence 9999999996 465553 544
No 103
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.98 E-value=3.6e-09 Score=98.49 Aligned_cols=101 Identities=21% Similarity=0.342 Sum_probs=79.5
Q ss_pred EEeChh-hHHHHHcCCC--eEEEEEECCCChhHhhHHHHHH-HHHHHhhcCCCCeEEEEEeCCcc----hhhHhhcCCCc
Q 017126 46 IELDES-NFDSAISSFD--YILVDFYAPWCGHCKRLAPQLD-EAAPILAKLKEPIVIAKVDADKY----SRLASKQEIDA 117 (377)
Q Consensus 46 ~~l~~~-~f~~~~~~~~--~~~v~f~~~~C~~C~~~~~~~~-~~a~~~~~~~~~v~~~~vd~~~~----~~~~~~~~i~~ 117 (377)
..++.. .+++.+.+++ +++++|||+||-.||.+++..- +.....+ -.++...++|.+++ .++-+++++-+
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~--~~~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA--LQDVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh--cCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 455555 8888886666 9999999999999999999644 3333222 23599999999865 45778999999
Q ss_pred CCEEEEEe-CCeeE-eecCCCCHHHHHHHHHhh
Q 017126 118 FPTLKIFM-HGIPT-EYYGPRKAELLVRYLKKF 148 (377)
Q Consensus 118 ~P~~~~~~-~g~~~-~y~g~~~~~~i~~~~~~~ 148 (377)
.|++++|. +|+.. .-.|..+++.+.+++++.
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 99999998 56544 489999999999999875
No 104
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.3e-08 Score=76.20 Aligned_cols=94 Identities=23% Similarity=0.287 Sum_probs=71.5
Q ss_pred HHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc----------------hhhHhhcCCC
Q 017126 53 FDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----------------SRLASKQEID 116 (377)
Q Consensus 53 f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----------------~~~~~~~~i~ 116 (377)
..++.-++++.+++|-++.|..|.++.....+..+.-+-..+++.++.+|.+.. ++++++|+++
T Consensus 35 ~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vr 114 (182)
T COG2143 35 NKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVR 114 (182)
T ss_pred HHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccc
Confidence 344445779999999999999999999887665444333334588888887532 4899999999
Q ss_pred cCCEEEEEeC-CeeEe-ecCCCCHHHHHHHHH
Q 017126 117 AFPTLKIFMH-GIPTE-YYGPRKAELLVRYLK 146 (377)
Q Consensus 117 ~~P~~~~~~~-g~~~~-y~g~~~~~~i~~~~~ 146 (377)
++|++++|.. |+.+- ..|...+++...-++
T Consensus 115 stPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 115 STPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred cCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 9999999975 67665 588888887765443
No 105
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.96 E-value=6.7e-09 Score=78.82 Aligned_cols=90 Identities=18% Similarity=0.237 Sum_probs=72.7
Q ss_pred HcCCCeEEEEEECCCChhHhhHHHH-HH--HHHHHhhcCCCCeEEEEEeCC--cchhhHhhcCCCcCCEEEEEeC--Cee
Q 017126 57 ISSFDYILVDFYAPWCGHCKRLAPQ-LD--EAAPILAKLKEPIVIAKVDAD--KYSRLASKQEIDAFPTLKIFMH--GIP 129 (377)
Q Consensus 57 ~~~~~~~~v~f~~~~C~~C~~~~~~-~~--~~a~~~~~~~~~v~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~--g~~ 129 (377)
.+++++++|+||++||+.|+.+... |. .+.+.+++ .+.+..+|.+ +...+++.|++.++|++.++.. |+.
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~ 90 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEV 90 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcE
Confidence 3678999999999999999999774 43 35555544 4888888886 4678899999999999999975 776
Q ss_pred Ee-ecCCCCHHHHHHHHHhhc
Q 017126 130 TE-YYGPRKAELLVRYLKKFV 149 (377)
Q Consensus 130 ~~-y~g~~~~~~i~~~~~~~~ 149 (377)
+. ..|..+++.+.+-+++..
T Consensus 91 l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 91 LKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred eEEEcCCCCHHHHHHHHHHHH
Confidence 65 799999999988887654
No 106
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.95 E-value=3.9e-08 Score=72.28 Aligned_cols=106 Identities=25% Similarity=0.449 Sum_probs=84.3
Q ss_pred CCEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC-----cchhhHhhcCC--
Q 017126 43 GKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-----KYSRLASKQEI-- 115 (377)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-----~~~~~~~~~~i-- 115 (377)
...+.|++-+|+++|.+.+.++|.|-..+ +--.-+.+|.++|.+.....+++.++.|... +|.+|+++|+|
T Consensus 4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIPKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TTSEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred CceeeccceehhheeccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 46789999999999999999999998655 4457778899999555555678999999985 47899999999
Q ss_pred CcCCEEEEEeCC--eeEee--cCCCCHHHHHHHHHhhcC
Q 017126 116 DAFPTLKIFMHG--IPTEY--YGPRKAELLVRYLKKFVA 150 (377)
Q Consensus 116 ~~~P~~~~~~~g--~~~~y--~g~~~~~~i~~~~~~~~~ 150 (377)
+.+|.+++|..| .++.| .|+.+++.|..|++.+.+
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 569999999964 58888 899999999999988754
No 107
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.93 E-value=5.8e-08 Score=78.40 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=65.1
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc-------------hhhHhhcCC--CcCCEEEEEe-CC
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------------SRLASKQEI--DAFPTLKIFM-HG 127 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------------~~~~~~~~i--~~~P~~~~~~-~g 127 (377)
+|.||++||++|++..|.+.++++++. +.+..|+.+.. ..+.+.|++ .++|+.+++. +|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G 147 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT 147 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence 888999999999999999999999862 55555555422 225668885 6999999995 57
Q ss_pred eeE--eecCCCCHHHHHHHHHhhcCC
Q 017126 128 IPT--EYYGPRKAELLVRYLKKFVAP 151 (377)
Q Consensus 128 ~~~--~y~g~~~~~~i~~~~~~~~~~ 151 (377)
+.. .+.|..+.+.+.+.+...+.-
T Consensus 148 ~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 148 LEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred cEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 664 389999999998888777654
No 108
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.85 E-value=6.5e-08 Score=78.60 Aligned_cols=126 Identities=12% Similarity=0.010 Sum_probs=78.2
Q ss_pred HHHHHHHHHhhhhhhhcCCCCCccccccCCCCCEEEeC-----hhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHH
Q 017126 12 LLCLLLLTGRGMMLLTGRGLSSEEETKFKIDGKVIELD-----ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAA 86 (377)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~-----~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a 86 (377)
+++++++.+++.++....+..-|.-...+ ..-+.|+ ...+...--.+++.+|.|||.||++|+..+|.+..++
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~p~v~~~~--~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~ 85 (184)
T TIGR01626 8 AVCGVIFPSSAWAHNLQVEQSVPSVGVSE--YGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIK 85 (184)
T ss_pred HHHHHHhHHHHhhhhhhcCCcCCceEecC--CceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHH
Confidence 34444666666776655554433321111 1112222 2233333235799999999999999999999999996
Q ss_pred HHhhcCCCCeEE------EEEeCCcc-----------------------------hhhHhhcCCCcCCEE-EEEe-CCee
Q 017126 87 PILAKLKEPIVI------AKVDADKY-----------------------------SRLASKQEIDAFPTL-KIFM-HGIP 129 (377)
Q Consensus 87 ~~~~~~~~~v~~------~~vd~~~~-----------------------------~~~~~~~~i~~~P~~-~~~~-~g~~ 129 (377)
.. + +.+ ..||.++. ..+...|++.+.|+- +++. +|+.
T Consensus 86 ~~--~----~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkV 159 (184)
T TIGR01626 86 AA--K----FPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKV 159 (184)
T ss_pred Hc--C----CCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcE
Confidence 42 1 334 55555432 235667899999777 5664 4776
Q ss_pred Ee-ecCCCCHHHHHHHH
Q 017126 130 TE-YYGPRKAELLVRYL 145 (377)
Q Consensus 130 ~~-y~g~~~~~~i~~~~ 145 (377)
.. +.|..+.+++.+.+
T Consensus 160 v~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 160 KFVKEGALSDSDIQTVI 176 (184)
T ss_pred EEEEeCCCCHHHHHHHH
Confidence 64 89999888876643
No 109
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.85 E-value=3.9e-08 Score=101.66 Aligned_cols=90 Identities=17% Similarity=0.293 Sum_probs=74.2
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeC---------------------------CcchhhHh
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA---------------------------DKYSRLAS 111 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~---------------------------~~~~~~~~ 111 (377)
++++++|.||++||++|+...|.+.++++++++. .+.+..|.+ +.+..+.+
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~--~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~ 496 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ--PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWR 496 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC--CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHH
Confidence 5699999999999999999999999999998653 376766643 22345778
Q ss_pred hcCCCcCCEEEEE-eCCeeEe-ecCCCCHHHHHHHHHhhcC
Q 017126 112 KQEIDAFPTLKIF-MHGIPTE-YYGPRKAELLVRYLKKFVA 150 (377)
Q Consensus 112 ~~~i~~~P~~~~~-~~g~~~~-y~g~~~~~~i~~~~~~~~~ 150 (377)
+|+|.++|+++++ ++|+.+. +.|....+.+.+++...+.
T Consensus 497 ~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred hcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 8999999999999 5788764 8899999999999987753
No 110
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.84 E-value=2.1e-08 Score=71.15 Aligned_cols=70 Identities=31% Similarity=0.485 Sum_probs=52.3
Q ss_pred HHHHHcCCCeEEEEEECCCChhHhhHHHHH---HHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeC
Q 017126 53 FDSAISSFDYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH 126 (377)
Q Consensus 53 f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 126 (377)
+..+.+++++++|.|+++||+.|+.+...+ ..+.+.+.+ ++....||.++.....+..+ .++|+++++.+
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~---~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp 82 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK---NFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP 82 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH---CSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC---CEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence 344457889999999999999999999887 345554544 39999999976655432222 67999999863
No 111
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.78 E-value=2.4e-08 Score=75.84 Aligned_cols=60 Identities=25% Similarity=0.393 Sum_probs=44.3
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEE---eCCcchhhHhhcCCCcCCEE
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV---DADKYSRLASKQEIDAFPTL 121 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~v---d~~~~~~~~~~~~i~~~P~~ 121 (377)
++++++|.||++||++|+...|.+.++++.+++ ++.+..+ +.++...+++++++..+|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 468999999999999999999999999887643 2555545 22334456777777667754
No 112
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.76 E-value=2.9e-08 Score=75.55 Aligned_cols=75 Identities=11% Similarity=0.150 Sum_probs=49.6
Q ss_pred hHHHHH----cCCCeEEEEEECCCChhHhhHHHHHH---HHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEE
Q 017126 52 NFDSAI----SSFDYILVDFYAPWCGHCKRLAPQLD---EAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF 124 (377)
Q Consensus 52 ~f~~~~----~~~~~~~v~f~~~~C~~C~~~~~~~~---~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 124 (377)
+|++.+ +++++++|.||++||++|+.+....- ++++.+++ ++....++.+....-....+ .++|+++++
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~td~~~~~~g-~~vPtivFl 86 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETTDKNLSPDG-QYVPRIMFV 86 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccCCCCcCccC-cccCeEEEE
Confidence 455544 78899999999999999999998753 34444432 36666677642211111233 689999999
Q ss_pred eC-CeeE
Q 017126 125 MH-GIPT 130 (377)
Q Consensus 125 ~~-g~~~ 130 (377)
.. |+.+
T Consensus 87 d~~g~vi 93 (130)
T cd02960 87 DPSLTVR 93 (130)
T ss_pred CCCCCCc
Confidence 64 5433
No 113
>smart00594 UAS UAS domain.
Probab=98.75 E-value=6.6e-08 Score=74.16 Aligned_cols=93 Identities=15% Similarity=0.196 Sum_probs=70.8
Q ss_pred hhhHHHHH----cCCCeEEEEEECCCChhHhhHHHH-HH--HHHHHhhcCCCCeEEEEEeCC--cchhhHhhcCCCcCCE
Q 017126 50 ESNFDSAI----SSFDYILVDFYAPWCGHCKRLAPQ-LD--EAAPILAKLKEPIVIAKVDAD--KYSRLASKQEIDAFPT 120 (377)
Q Consensus 50 ~~~f~~~~----~~~~~~~v~f~~~~C~~C~~~~~~-~~--~~a~~~~~~~~~v~~~~vd~~--~~~~~~~~~~i~~~P~ 120 (377)
..+|++++ +++++++|+||++||+.|+.+... |. ++.+.+++ ++.+..+|.+ +..+++..|++.++|+
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~eg~~l~~~~~~~~~P~ 89 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSEGQRVSQFYKLDSFPY 89 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChhHHHHHHhcCcCCCCE
Confidence 34555554 677899999999999999998875 32 34555543 4888888875 4567899999999999
Q ss_pred EEEEeC-C-e----eE-eecCCCCHHHHHHHH
Q 017126 121 LKIFMH-G-I----PT-EYYGPRKAELLVRYL 145 (377)
Q Consensus 121 ~~~~~~-g-~----~~-~y~g~~~~~~i~~~~ 145 (377)
+.++.. | . .+ ...|..+++++++++
T Consensus 90 ~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 90 VAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 999964 3 2 23 378999999998876
No 114
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.68 E-value=3.4e-07 Score=77.79 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=66.0
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc-------c----hhhH-hhcCC-----------
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------Y----SRLA-SKQEI----------- 115 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~----~~~~-~~~~i----------- 115 (377)
++++++|.||++||+.|+...|.+.++.+++++. .+.+..|+|+. . .+++ +++++
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~--Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~ 175 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVN 175 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC--CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCC
Confidence 4589999999999999999999999999998754 38888888741 1 2232 33322
Q ss_pred -----------------------CcCCEEEEEe-CCeeEe-ecCCCCHHHHHHHHHhhc
Q 017126 116 -----------------------DAFPTLKIFM-HGIPTE-YYGPRKAELLVRYLKKFV 149 (377)
Q Consensus 116 -----------------------~~~P~~~~~~-~g~~~~-y~g~~~~~~i~~~~~~~~ 149 (377)
...|+-+++. +|+.+. |.|..+.+.|...+++.+
T Consensus 176 G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 176 GPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred cchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 2236666664 577764 889888888888887765
No 115
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.65 E-value=2.2e-07 Score=71.93 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=57.3
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC-----c----------------------chhhHh
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-----K----------------------YSRLAS 111 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-----~----------------------~~~~~~ 111 (377)
++++++|.||++||+.|....|.+.++.+++++. .+.+..|++. + +..+.+
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~--~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~ 99 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDD--GLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWR 99 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcC--CeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHH
Confidence 5589999999999999999999999999998753 4777777652 1 123667
Q ss_pred hcCCCcCCEEEEEe-CCeeEe-ecC
Q 017126 112 KQEIDAFPTLKIFM-HGIPTE-YYG 134 (377)
Q Consensus 112 ~~~i~~~P~~~~~~-~g~~~~-y~g 134 (377)
.|++.++|+.+++. +|+.+. +.|
T Consensus 100 ~~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 100 AYGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred HhCCCcCCeEEEECCCCcEEEEEec
Confidence 78999999999995 566553 454
No 116
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=98.63 E-value=8.4e-07 Score=63.10 Aligned_cols=109 Identities=15% Similarity=0.270 Sum_probs=76.5
Q ss_pred CcccccChhhHHhh-hcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC---cEEEEEeccchhhH----HhhcCCCC
Q 017126 253 PLSVPINQDTLNLL-KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADF----ADTFEANK 324 (377)
Q Consensus 253 p~~~~l~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~~----~~~~gi~~ 324 (377)
|.+++++.++...+ ...-.-..++.|....++.-.+++++++++|+++.+ +.|+|+|..++|-+ -+.|||+
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~ID- 79 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGID- 79 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcc-
Confidence 45667777665443 222233444444555667778999999999999886 99999999998654 4678984
Q ss_pred CCCCCeEEEEeCCC---CceeccCCCCCCcccchhhHHHHHHHHh
Q 017126 325 KSKLPKMVVWDGNE---NYLTVIGSESIDEEDQGSQISRFLEGYR 366 (377)
Q Consensus 325 ~~~~P~l~i~~~~~---~~~~~~~~~~~~~~~t~e~i~~Fi~~~~ 366 (377)
-..|++.+++.+. .+.-+.+. .+..|.+.|+.||++++
T Consensus 80 -l~~PqIGVV~vtdadSvW~~m~~~---~d~~t~~~Le~WiedVL 120 (120)
T cd03074 80 -LFRPQIGVVNVTDADSVWMEMDDD---EDLPTAEELEDWIEDVL 120 (120)
T ss_pred -cCCCceeeEecccccceeEecccc---cccCcHHHHHHHHHhhC
Confidence 4479999999953 33332222 23368999999999975
No 117
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.61 E-value=4e-07 Score=76.07 Aligned_cols=110 Identities=14% Similarity=0.213 Sum_probs=73.9
Q ss_pred CCccccccCCCCCEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC-------
Q 017126 32 SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD------- 104 (377)
Q Consensus 32 ~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~------- 104 (377)
..+..+..+.++..+.|.+ + ++++++|.||++||+.|+...|.+.++.+++.+. .+.+..|+|+
T Consensus 18 ~~pdf~l~d~~G~~vsL~~--~-----kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~--g~~vvgv~~~~~~~~e~ 88 (199)
T PTZ00056 18 SIYDYTVKTLEGTTVPMSS--L-----KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL--GLEILAFPTSQFLNQEF 88 (199)
T ss_pred CCCceEEECCCCCEEeHHH--h-----CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC--ceEEEEecchhccCCCC
Confidence 4555555555555554432 2 4689999999999999999999999999998754 3888889873
Q ss_pred c----chhhHhhcCCC------------------------------------cCC---EEEEE-eCCeeEe-ecCCCCHH
Q 017126 105 K----YSRLASKQEID------------------------------------AFP---TLKIF-MHGIPTE-YYGPRKAE 139 (377)
Q Consensus 105 ~----~~~~~~~~~i~------------------------------------~~P---~~~~~-~~g~~~~-y~g~~~~~ 139 (377)
+ ...+++++++. .+| +-+++ ++|+.+. +.|..+.+
T Consensus 89 d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~ 168 (199)
T PTZ00056 89 PNTKDIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPL 168 (199)
T ss_pred CCHHHHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHH
Confidence 1 23445555541 111 23333 4577665 67777777
Q ss_pred HHHHHHHhhcC
Q 017126 140 LLVRYLKKFVA 150 (377)
Q Consensus 140 ~i~~~~~~~~~ 150 (377)
.+.+.+.+.+.
T Consensus 169 ~l~~~I~~ll~ 179 (199)
T PTZ00056 169 ELEKKIAELLG 179 (199)
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 118
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.60 E-value=1.1e-06 Score=65.27 Aligned_cols=100 Identities=8% Similarity=0.247 Sum_probs=81.7
Q ss_pred ccccChhhHHhhhcC-CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCC-CcEEEEEeccchhhHHhhcCCCCCCCCCeEE
Q 017126 255 SVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANR-ELVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (377)
Q Consensus 255 ~~~l~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~-~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~ 332 (377)
+..++.+++...... ++++++.|+. ......+.+...+.++++.++ ++.|+.+|+...+.+++.+++ ...|+++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~-~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v---~~~Pt~~ 76 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYA-PWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGV---KSVPTII 76 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEES-TTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTC---SSSSEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeC-CCCCccccccceecccccccccccccchhhhhccchhhhccCC---CCCCEEE
Confidence 346788888876665 6777777765 456777889999999999999 599999999999999999999 8899999
Q ss_pred EEeCCCCceeccCCCCCCcccchhhHHHHHHH
Q 017126 333 VWDGNENYLTVIGSESIDEEDQGSQISRFLEG 364 (377)
Q Consensus 333 i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~ 364 (377)
+++.++....+ .+..+.+.|.+||+.
T Consensus 77 ~~~~g~~~~~~------~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 77 FFKNGKEVKRY------NGPRNAESLIEFIEK 102 (103)
T ss_dssp EEETTEEEEEE------ESSSSHHHHHHHHHH
T ss_pred EEECCcEEEEE------ECCCCHHHHHHHHHc
Confidence 99987544433 555788999999975
No 119
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.58 E-value=1.1e-06 Score=69.80 Aligned_cols=99 Identities=23% Similarity=0.398 Sum_probs=69.3
Q ss_pred CCCCccccccC--CCCCEEEeChhhHHHHHcCCCeEEEEEECC-CChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc
Q 017126 30 GLSSEEETKFK--IDGKVIELDESNFDSAISSFDYILVDFYAP-WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106 (377)
Q Consensus 30 ~~~~~~~~~~~--~~~~v~~l~~~~f~~~~~~~~~~~v~f~~~-~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~ 106 (377)
|...|..+... .++..+.|.+ -++++++|.||++ ||++|+...|.+.++++.++..+ +.+..|..+.+
T Consensus 3 G~~~P~~~~~~~~~~g~~~~l~~-------~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~ 73 (146)
T PF08534_consen 3 GDKAPDFSLKDLDLDGKPVSLSD-------FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDD 73 (146)
T ss_dssp TSB--CCEEEEEETTSEEEEGGG-------GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSS
T ss_pred CCCCCCeEEEeecCCCCEecHHH-------hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCC
Confidence 33445544432 5566666654 2679999999999 99999999999999988876543 66666665444
Q ss_pred ---------------------hhhHhhcCCC---------cCCEEEEEeC-CeeEe-ecCCCC
Q 017126 107 ---------------------SRLASKQEID---------AFPTLKIFMH-GIPTE-YYGPRK 137 (377)
Q Consensus 107 ---------------------~~~~~~~~i~---------~~P~~~~~~~-g~~~~-y~g~~~ 137 (377)
..+.+.|++. ++|+++++.. |+... ..|...
T Consensus 74 ~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 74 PPVREFLKKYGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHHHHHHhhCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 2578888988 9999988865 65553 455443
No 120
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.58 E-value=4.3e-07 Score=62.82 Aligned_cols=68 Identities=24% Similarity=0.360 Sum_probs=52.2
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchh----hHhhcCCCcCCEEEEEeCCeeEeecCCCCHH
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEIDAFPTLKIFMHGIPTEYYGPRKAE 139 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~ 139 (377)
+..|+++||++|++..+.+.+. ++.+..+|+++++. +++.+++.++|++++. |+. ..| .+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~--~~g-~~~~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI--IVG-FDPE 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE--Eee-CCHH
Confidence 5679999999999998777541 27788899987654 5677999999999985 544 444 4678
Q ss_pred HHHHHH
Q 017126 140 LLVRYL 145 (377)
Q Consensus 140 ~i~~~~ 145 (377)
.|.+|+
T Consensus 68 ~i~~~i 73 (74)
T TIGR02196 68 KLDQLL 73 (74)
T ss_pred HHHHHh
Confidence 887776
No 121
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5e-07 Score=77.26 Aligned_cols=115 Identities=17% Similarity=0.240 Sum_probs=91.2
Q ss_pred CCCCCEEEeChhhHHHHHcCC---CeEEEEEECC----CChhHhhHHHHHHHHHHHhhcCC-----CCeEEEEEeCCcch
Q 017126 40 KIDGKVIELDESNFDSAISSF---DYILVDFYAP----WCGHCKRLAPQLDEAAPILAKLK-----EPIVIAKVDADKYS 107 (377)
Q Consensus 40 ~~~~~v~~l~~~~f~~~~~~~---~~~~v~f~~~----~C~~C~~~~~~~~~~a~~~~~~~-----~~v~~~~vd~~~~~ 107 (377)
+.+..|+.+++.+|.+++..+ -..+|+|+|. .|.-|+.+..+|.-+|+.+...+ .++-|..||.++.+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 667899999999999999532 2577788864 59999999999999999886432 37889999999999
Q ss_pred hhHhhcCCCcCCEEEEEeC--CeeEe------ecCCCCHHHHHHHHHhhcCCCce
Q 017126 108 RLASKQEIDAFPTLKIFMH--GIPTE------YYGPRKAELLVRYLKKFVAPDVS 154 (377)
Q Consensus 108 ~~~~~~~i~~~P~~~~~~~--g~~~~------y~g~~~~~~i~~~~~~~~~~~~~ 154 (377)
++.+.+++...|++++|.+ |.+.+ ++-...+|++.+|+...+.=.+.
T Consensus 117 ~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~ 171 (331)
T KOG2603|consen 117 QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR 171 (331)
T ss_pred HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence 9999999999999999965 32221 22233499999999887764444
No 122
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.56 E-value=1.2e-06 Score=64.78 Aligned_cols=99 Identities=10% Similarity=0.112 Sum_probs=78.0
Q ss_pred CcccccChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeE
Q 017126 253 PLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 331 (377)
Q Consensus 253 p~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l 331 (377)
|.+.+++..+++.....++++++.|+. ......+.+...+.++|+++++ +.|+.+|+++++.+++.+++ ..+|++
T Consensus 1 ~~~~~l~~~~f~~~v~~~~~~~v~f~a-~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~ 76 (101)
T cd03003 1 PEIVTLDRGDFDAAVNSGEIWFVNFYS-PRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGV---NSYPSL 76 (101)
T ss_pred CCeEEcCHhhHHHHhcCCCeEEEEEEC-CCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCC---CccCEE
Confidence 346678888998877666777777775 4456667888999999999987 89999999999999999999 789999
Q ss_pred EEEeCCCCceeccCCCCCCcccchhhHHHH
Q 017126 332 VVWDGNENYLTVIGSESIDEEDQGSQISRF 361 (377)
Q Consensus 332 ~i~~~~~~~~~~~~~~~~~~~~t~e~i~~F 361 (377)
+++........ +.|..+.++|.+|
T Consensus 77 ~~~~~g~~~~~------~~G~~~~~~l~~f 100 (101)
T cd03003 77 YVFPSGMNPEK------YYGDRSKESLVKF 100 (101)
T ss_pred EEEcCCCCccc------CCCCCCHHHHHhh
Confidence 99975432222 3566778888877
No 123
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.54 E-value=2.9e-07 Score=71.44 Aligned_cols=73 Identities=25% Similarity=0.442 Sum_probs=61.2
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc-------------------------hhhHhhc
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------------------------SRLASKQ 113 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------------------------~~~~~~~ 113 (377)
+++.+.++|.+.||++|+.|.|.+.++.+.++..+..+-+.-|+.+.+ .+++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 459999999999999999999999999999988766677777776544 3588999
Q ss_pred CCCcCCEEEEEeC-CeeEe
Q 017126 114 EIDAFPTLKIFMH-GIPTE 131 (377)
Q Consensus 114 ~i~~~P~~~~~~~-g~~~~ 131 (377)
+|.+.|++++..+ |+.+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 9999999998865 65554
No 124
>PLN02412 probable glutathione peroxidase
Probab=98.54 E-value=1e-06 Score=71.64 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=73.2
Q ss_pred CCccccccCCCCCEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc------
Q 017126 32 SSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK------ 105 (377)
Q Consensus 32 ~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~------ 105 (377)
+.|..+..+.++..+.|. +| .+++++|.||++||+.|++..|.+.++.+++++. .+.+..|+|+.
T Consensus 8 ~~pdf~l~d~~G~~v~l~--~~-----~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~--g~~vvgv~~~~~~~~~~ 78 (167)
T PLN02412 8 SIYDFTVKDIGGNDVSLN--QY-----KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ--GFEILAFPCNQFLGQEP 78 (167)
T ss_pred CCCceEEECCCCCEEeHH--Hh-----CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC--CcEEEEecccccccCCC
Confidence 344445554455544432 22 4589999999999999999999999999999864 38888888742
Q ss_pred -c-hh----hHhhcC----------------------------------CCcCCEEEEE-eCCeeEe-ecCCCCHHHHHH
Q 017126 106 -Y-SR----LASKQE----------------------------------IDAFPTLKIF-MHGIPTE-YYGPRKAELLVR 143 (377)
Q Consensus 106 -~-~~----~~~~~~----------------------------------i~~~P~~~~~-~~g~~~~-y~g~~~~~~i~~ 143 (377)
. .+ ++++++ |...|+-+++ ++|+.+. +.|..+.+.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~ 158 (167)
T PLN02412 79 GSNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEK 158 (167)
T ss_pred CCHHHHHHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHH
Confidence 1 12 123333 2224565666 4566664 778888888887
Q ss_pred HHHhhcC
Q 017126 144 YLKKFVA 150 (377)
Q Consensus 144 ~~~~~~~ 150 (377)
.+...+.
T Consensus 159 ~i~~~l~ 165 (167)
T PLN02412 159 DIQNLLG 165 (167)
T ss_pred HHHHHHh
Confidence 7776643
No 125
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.54 E-value=2.5e-06 Score=69.75 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=67.6
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc-------c----------------------hhh
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-------Y----------------------SRL 109 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~----------------------~~~ 109 (377)
++++++|+||++||+.|....+.+.++.+++.+. ++.+..|+++. . ..+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~--~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~ 101 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK--GVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEV 101 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC--CeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHH
Confidence 5689999999999999999999999999988643 48888887753 1 246
Q ss_pred HhhcCCCcCCEEEEEeCCeeEeecC-----------CCCHHHHHHHHHhhcCCC
Q 017126 110 ASKQEIDAFPTLKIFMHGIPTEYYG-----------PRKAELLVRYLKKFVAPD 152 (377)
Q Consensus 110 ~~~~~i~~~P~~~~~~~g~~~~y~g-----------~~~~~~i~~~~~~~~~~~ 152 (377)
++.|++...|+++++.++..+.|.+ ..+...+.+-|...+...
T Consensus 102 ~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 102 AKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 7788999999999997533343432 234566666666555443
No 126
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.52 E-value=1.8e-06 Score=64.28 Aligned_cols=100 Identities=16% Similarity=0.281 Sum_probs=76.8
Q ss_pred CcccccChhhHHhhh-cCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCe
Q 017126 253 PLSVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK 330 (377)
Q Consensus 253 p~~~~l~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~ 330 (377)
|.+.+++.++++... ..+.++++.|+. ......+.+...+.+++.++.+ +.|+.+|++.++++++.+++ ..+|+
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~~v~v~f~a-~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i---~~~Pt 76 (104)
T cd03004 1 PSVITLTPEDFPELVLNRKEPWLVDFYA-PWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANI---RAYPT 76 (104)
T ss_pred CcceEcCHHHHHHHHhcCCCeEEEEEEC-CCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCC---CcccE
Confidence 456788888888754 445667776665 4466667888999999999876 89999999999999999999 88999
Q ss_pred EEEEeCC-CCceeccCCCCCCcccc-hhhHHHHH
Q 017126 331 MVVWDGN-ENYLTVIGSESIDEEDQ-GSQISRFL 362 (377)
Q Consensus 331 l~i~~~~-~~~~~~~~~~~~~~~~t-~e~i~~Fi 362 (377)
+++++.+ +....+ .|..+ .++|.+||
T Consensus 77 ~~~~~~g~~~~~~~------~G~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSY------NGWHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEc------cCCCCCHHHHHhhC
Confidence 9999886 433333 44454 77888875
No 127
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.52 E-value=1.2e-06 Score=75.99 Aligned_cols=102 Identities=24% Similarity=0.363 Sum_probs=73.7
Q ss_pred CCCEEEeC-hhhHHHHHcC---CCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCc
Q 017126 42 DGKVIELD-ESNFDSAISS---FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA 117 (377)
Q Consensus 42 ~~~v~~l~-~~~f~~~~~~---~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~ 117 (377)
-+.|..|+ .+.|-..+++ ...++|.||.+.++.|..+...+..+|.++.. +.|.+|..+..+ ++.+|.+..
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~~-~~~~f~~~~ 198 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKCP-ASENFPDKN 198 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGCC-TTTTS-TTC
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhccC-cccCCcccC
Confidence 36888885 5788888843 34799999999999999999999999998765 999999988776 788999999
Q ss_pred CCEEEEEeCCeeEe-ecC-------CCCHHHHHHHHHhh
Q 017126 118 FPTLKIFMHGIPTE-YYG-------PRKAELLVRYLKKF 148 (377)
Q Consensus 118 ~P~~~~~~~g~~~~-y~g-------~~~~~~i~~~~~~~ 148 (377)
.|+|++|++|..+. +.| ..+...|..|+.++
T Consensus 199 LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 199 LPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp -SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 99999999998664 433 23444555555443
No 128
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.48 E-value=2.8e-06 Score=72.36 Aligned_cols=184 Identities=18% Similarity=0.274 Sum_probs=119.2
Q ss_pred HHHHHHHccCCcccEEEeecCCh--------HHHHHHHHHhhhhh------HHHHhhcchhhhhhhcCCCCCCeEEEEcC
Q 017126 161 EVSDFVENAGTFFPLFIGFGLDE--------SVMSNLALKYKKKA------WFAVAKDFSEDTMVLYDFDKVPALVALQP 226 (377)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~v~~~P~l~~~~~ 226 (377)
+++..+..++ .++|.|+.++ +.|.+.|..++... |-.+.++....++.+|.|+.+|++.+++.
T Consensus 5 N~~~il~s~e---lvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrn 81 (375)
T KOG0912|consen 5 NIDSILDSNE---LVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRN 81 (375)
T ss_pred cHHHhhccce---EEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeec
Confidence 4556666644 4889998875 46777777766422 22233566788999999999999999998
Q ss_pred CCCCcccccCCCCHHHHHHHHHhhCCCcccccCh-hhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cE
Q 017126 227 SYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQ-DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LV 304 (377)
Q Consensus 227 ~~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~l~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~ 304 (377)
+.--...|.|.++.+.|.+||++..--.+.++.. +.+..+....+..++..+.+.+.+.++ .++++|.-.++ -.
T Consensus 82 G~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~----~~~kva~~lr~dc~ 157 (375)
T KOG0912|consen 82 GEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYD----NLRKVASLLRDDCV 157 (375)
T ss_pred cchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHH----HHHHHHHHHhhccE
Confidence 7666778999999999999999986666666654 445566665678888888877766654 45556655554 33
Q ss_pred EEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCCCce--eccCCCCCCcccchhhHHHHHHH
Q 017126 305 FCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYL--TVIGSESIDEEDQGSQISRFLEG 364 (377)
Q Consensus 305 f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~~~~--~~~~~~~~~~~~t~e~i~~Fi~~ 364 (377)
|..--++ ..... ...+.+ +.++++++.-. .+.|++. |.+.+.+||++
T Consensus 158 f~V~~gD----~~~~~---~~~~~~-~~~f~pd~~~~~~~f~G~~~-----nf~el~~Wi~d 206 (375)
T KOG0912|consen 158 FLVGFGD----LLKPH---EPPGKN-ILVFDPDHSEPNHEFLGSMT-----NFDELKQWIQD 206 (375)
T ss_pred EEeeccc----cccCC---CCCCCc-eEEeCCCcCCcCcccccccc-----cHHHHHHHHHh
Confidence 3222221 11111 223333 66777753221 3333322 45788999886
No 129
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.46 E-value=2.3e-06 Score=65.92 Aligned_cols=93 Identities=20% Similarity=0.345 Sum_probs=69.4
Q ss_pred CCCccccccCCCCCEEEeChhhHHHHHcCCCeEEEEEECC-CChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc---
Q 017126 31 LSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAP-WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY--- 106 (377)
Q Consensus 31 ~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~v~f~~~-~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~--- 106 (377)
..+|.....+.++..+.|++- .+++++|.||+. ||++|....+.+.++..+++.. .+.+..|+.+..
T Consensus 3 ~~~P~f~l~~~~g~~~~l~~l-------~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~--~~~vi~is~d~~~~~ 73 (124)
T PF00578_consen 3 DKAPDFTLTDSDGKTVSLSDL-------KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK--GVQVIGISTDDPEEI 73 (124)
T ss_dssp SBGGCEEEETTTSEEEEGGGG-------TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TEEEEEEESSSHHHH
T ss_pred CCCCCcEeECCCCCEEEHHHH-------CCCcEEEEEeCccCccccccchhHHHHHhhhhccc--eEEeeecccccccch
Confidence 345555555555566665432 559999999999 9999999999999999998854 388888887543
Q ss_pred ------------------hhhHhhcCCC------cCCEEEEEeCCeeEee
Q 017126 107 ------------------SRLASKQEID------AFPTLKIFMHGIPTEY 132 (377)
Q Consensus 107 ------------------~~~~~~~~i~------~~P~~~~~~~g~~~~y 132 (377)
..+++.|++. .+|+++++..+..+.|
T Consensus 74 ~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 74 KQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp HHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred hhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 2467778888 8899998887655544
No 130
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.41 E-value=1.2e-06 Score=58.43 Aligned_cols=60 Identities=38% Similarity=0.741 Sum_probs=51.2
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHh---hcCCCcCCEEEEEeCC
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS---KQEIDAFPTLKIFMHG 127 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~---~~~i~~~P~~~~~~~g 127 (377)
++.|+++||++|++..+.+.++ ... ..++.+..++++.....+. .+++.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALL---NKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-Hhh---CCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 222 2359999999998887765 8999999999999887
No 131
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.40 E-value=5.7e-06 Score=61.35 Aligned_cols=98 Identities=11% Similarity=0.108 Sum_probs=74.5
Q ss_pred ccccChhhHHhhhcC-CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEE
Q 017126 255 SVPINQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (377)
Q Consensus 255 ~~~l~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~ 332 (377)
+.+++..++...... +.++++.|+ .......+.+...+.+++.++.+ +.|+.+|++..+++++.+++ .+.|+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~-a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i---~~~P~~~ 77 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFY-APWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGV---RGFPTIK 77 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEE-CCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCC---CccCEEE
Confidence 356778888775544 444666665 44566777888889999998876 89999999999999999999 7899999
Q ss_pred EEeCC-CCceeccCCCCCCcccchhhHHHHH
Q 017126 333 VWDGN-ENYLTVIGSESIDEEDQGSQISRFL 362 (377)
Q Consensus 333 i~~~~-~~~~~~~~~~~~~~~~t~e~i~~Fi 362 (377)
+++.+ ..... +.++.+.++|.+|+
T Consensus 78 ~~~~~~~~~~~------~~g~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQD------YQGGRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceee------cCCCCCHHHHHHHh
Confidence 99876 22222 35667888999886
No 132
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.40 E-value=1.8e-06 Score=65.51 Aligned_cols=69 Identities=33% Similarity=0.627 Sum_probs=61.7
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC-cchhhHhhcC--CCcCCEEEEEeCCeeEe
Q 017126 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-KYSRLASKQE--IDAFPTLKIFMHGIPTE 131 (377)
Q Consensus 60 ~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-~~~~~~~~~~--i~~~P~~~~~~~g~~~~ 131 (377)
.+++++.||++||++|+...|.+.+++..+.. .+.+..+|.. .++.+...++ +..+|++.++.+|....
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 103 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVD 103 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhh
Confidence 67999999999999999999999999998865 4889999997 7899999999 99999999998886543
No 133
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=98.38 E-value=3.7e-06 Score=59.82 Aligned_cols=101 Identities=17% Similarity=0.259 Sum_probs=68.8
Q ss_pred ccChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHh--------CCC--cEEEEEecc-chhhHHhhc-CCCC
Q 017126 257 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASA--------NRE--LVFCYVGIK-QFADFADTF-EANK 324 (377)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~--------~~~--~~f~~vd~~-~~~~~~~~~-gi~~ 324 (377)
.|++.+...+.. .||+++|.+..+....+...+.++.+|++ ..+ +.|. ++++ +..+.++.| ++
T Consensus 3 ~Lse~~a~~Ln~--~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~-~a~ede~tdsLRDf~nL-- 77 (116)
T cd03071 3 ELSESNAVQLNE--GPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFF-VAGEDDMTDSLRDYTNL-- 77 (116)
T ss_pred cccHHHHHhhcC--CceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeee-eeccchHHHHHHHhcCC--
Confidence 456666666644 89999999766554566777777777764 112 4443 3333 345566554 66
Q ss_pred CCCCCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHh
Q 017126 325 KSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 366 (377)
Q Consensus 325 ~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~ 366 (377)
+..-|.++|++...+..+..+ ..+||.+++++|+.+|+
T Consensus 78 ~d~~P~LviLDip~r~~~v~~----~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 78 PEAAPLLTILDMSARAKYVMD----VEEITPAIVEAFVSDFL 115 (116)
T ss_pred CccCceEEEEeccccceEeCc----hHhcCHHHHHHHHHHhh
Confidence 688999999999644444432 57889999999999996
No 134
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.37 E-value=3.4e-06 Score=71.06 Aligned_cols=81 Identities=21% Similarity=0.199 Sum_probs=66.0
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC-----------cchhhHhhcCCCcCCEEEEEeCC
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD-----------KYSRLASKQEIDAFPTLKIFMHG 127 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~-----------~~~~~~~~~~i~~~P~~~~~~~g 127 (377)
..+..|++||.+.|+.|+.+.|.+..+++.+ + +.+..|+.+ .++.+++++||..+|++++...+
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~ 193 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY-G----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPN 193 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-C----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECC
Confidence 4589999999999999999999999999987 3 555555554 46889999999999999999875
Q ss_pred e--eEe-ecCCCCHHHHHHH
Q 017126 128 I--PTE-YYGPRKAELLVRY 144 (377)
Q Consensus 128 ~--~~~-y~g~~~~~~i~~~ 144 (377)
. ... -.|..+.++|.+-
T Consensus 194 ~~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 194 TKKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred CCeEEEEeeecCCHHHHHHh
Confidence 4 333 5888988888764
No 135
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.34 E-value=2.1e-05 Score=68.56 Aligned_cols=198 Identities=13% Similarity=0.123 Sum_probs=121.1
Q ss_pred ceecCChHHHHHHHHccCCcccEEEeecCCh-------------HHHHHHHHHhhhhh--HHHHh-hcchhhhhhhcCCC
Q 017126 153 VSILNSDAEVSDFVENAGTFFPLFIGFGLDE-------------SVMSNLALKYKKKA--WFAVA-KDFSEDTMVLYDFD 216 (377)
Q Consensus 153 ~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-------------~~~~~~a~~~~~~~--~~~~~-~~~~~~~~~~~~v~ 216 (377)
+..++ +.++.+.+.+.+. +++.|..+. +.+.+++.+....- -|+.+ ...+..+++++|+.
T Consensus 36 Vi~Ln-eKNfk~~lKkyd~---l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~ 111 (383)
T PF01216_consen 36 VIDLN-EKNFKRALKKYDV---LVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVE 111 (383)
T ss_dssp CEEE--TTTHHHHHHH-SE---EEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--
T ss_pred eEEcc-hhHHHHHHHhhcE---EEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCcc
Confidence 56664 4578888888775 556555321 12344555444332 23322 34578899999999
Q ss_pred CCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhhCCCcccccChhh-HHhhhc-CCCcEEEEEEeCCChHHHHHHHHHHH
Q 017126 217 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQNFLPLSVPINQDT-LNLLKD-DKRKIVLAIVEDETEEKSQKLVTTLK 294 (377)
Q Consensus 217 ~~P~l~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~p~~~~l~~~~-~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~ 294 (377)
..+++.+|+. ++...|+|.++++.|.+||......++..++... +..+.. ...+-++.+|....++. .+.+.
T Consensus 112 E~~SiyVfkd--~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~----yk~Fe 185 (383)
T PF01216_consen 112 EEGSIYVFKD--GEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEH----YKEFE 185 (383)
T ss_dssp STTEEEEEET--TEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHH----HHHHH
T ss_pred ccCcEEEEEC--CcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHH----HHHHH
Confidence 9999999986 7888999999999999999998777787776533 333322 12588888887654443 45688
Q ss_pred HHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCC--CCceeccCCCCCCcccchhhHHHHHHHHhcCccc
Q 017126 295 AAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN--ENYLTVIGSESIDEEDQGSQISRFLEGYREGRTE 371 (377)
Q Consensus 295 ~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~--~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~Gkl~ 371 (377)
.+|.+|.. |.|..+-- +.+++.+|+ . .--+-++.+= .-..++ ....|+++|.+|++.-..-.++
T Consensus 186 eAAe~F~p~IkFfAtfd---~~vAk~L~l---K-~nev~fyepF~~~pi~ip------~~p~~e~e~~~fi~~h~rptlr 252 (383)
T PF01216_consen 186 EAAEHFQPYIKFFATFD---KKVAKKLGL---K-LNEVDFYEPFMDEPITIP------GKPYTEEELVEFIEEHKRPTLR 252 (383)
T ss_dssp HHHHHCTTTSEEEEE-S---HHHHHHHT----S-TT-EEEE-TTSSSEEEES------SSS--HHHHHHHHHHT-S-SEE
T ss_pred HHHHhhcCceeEEEEec---chhhhhcCc---c-ccceeeeccccCCCccCC------CCCCCHHHHHHHHHHhchhHhh
Confidence 89999987 88865543 789999998 2 6678888883 223332 3345788999999987665555
Q ss_pred cc
Q 017126 372 QK 373 (377)
Q Consensus 372 ~~ 373 (377)
+.
T Consensus 253 kl 254 (383)
T PF01216_consen 253 KL 254 (383)
T ss_dssp E-
T ss_pred hC
Confidence 43
No 136
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.32 E-value=3.7e-06 Score=67.28 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=37.2
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 104 (377)
.+++++|.||++||+ |....|.+.++.+++.+. .+.+..|+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~--~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR--GLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC--CEEEEEeccC
Confidence 468999999999999 999999999999998653 3888888763
No 137
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.29 E-value=1.1e-05 Score=56.09 Aligned_cols=73 Identities=27% Similarity=0.492 Sum_probs=54.8
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCeeEeecC-CCCHHHHHH
Q 017126 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYG-PRKAELLVR 143 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~y~g-~~~~~~i~~ 143 (377)
|.+++++|+.|..+...+.+++..+. +.+-.++..+.+++ .+|||.++|++++ +|+ +.+.| .-+.+.+.+
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng~-~~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDIEDFEEI-EKYGVMSVPALVI--NGK-VVFVGRVPSKEELKE 73 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEETTTHHHH-HHTT-SSSSEEEE--TTE-EEEESS--HHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEccCHHHH-HHcCCCCCCEEEE--CCE-EEEEecCCCHHHHHH
Confidence 34478889999999999999988762 66667777666777 9999999999955 665 55778 667788888
Q ss_pred HHH
Q 017126 144 YLK 146 (377)
Q Consensus 144 ~~~ 146 (377)
|++
T Consensus 74 ~l~ 76 (76)
T PF13192_consen 74 LLE 76 (76)
T ss_dssp HHH
T ss_pred HhC
Confidence 774
No 138
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.29 E-value=3e-06 Score=67.45 Aligned_cols=89 Identities=26% Similarity=0.419 Sum_probs=78.5
Q ss_pred CCCEEEe-ChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCE
Q 017126 42 DGKVIEL-DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT 120 (377)
Q Consensus 42 ~~~v~~l-~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~ 120 (377)
.+....+ ++.+|-..+.++.-+++.||-|.-..|+-+..-++.+|...-+ ..|.+||+++.|=++.+++|+-.|+
T Consensus 65 hG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~PFlv~kL~IkVLP~ 140 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKAPFLVTKLNIKVLPT 140 (211)
T ss_pred CceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccCceeeeeeeeeEeee
Confidence 3556666 4888888888889999999999999999999999999987644 8999999999999999999999999
Q ss_pred EEEEeCCeeEe-ecC
Q 017126 121 LKIFMHGIPTE-YYG 134 (377)
Q Consensus 121 ~~~~~~g~~~~-y~g 134 (377)
+.+|.+|+... +.|
T Consensus 141 v~l~k~g~~~D~iVG 155 (211)
T KOG1672|consen 141 VALFKNGKTVDYVVG 155 (211)
T ss_pred EEEEEcCEEEEEEee
Confidence 99999998876 455
No 139
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.28 E-value=1.3e-05 Score=59.23 Aligned_cols=98 Identities=11% Similarity=0.187 Sum_probs=74.9
Q ss_pred cChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC---cEEEEEeccchhhHHhhcCCCCCCCCCeEEEE
Q 017126 258 INQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPKMVVW 334 (377)
Q Consensus 258 l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~ 334 (377)
|+..++......+.+.++.|+. ......+.+...+..++..+.+ +.++.+|+...+.+++.+++ ...|+++++
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~-~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i---~~~P~~~~~ 76 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYA-PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGV---SGFPTIKFF 76 (102)
T ss_pred CchhhHHHHhccCCcEEEEEEC-CCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCC---CcCCEEEEe
Confidence 4566777665566677777765 4555666777888888888774 88999999999999999999 789999999
Q ss_pred eCCCCceeccCCCCCCcccchhhHHHHHHHH
Q 017126 335 DGNENYLTVIGSESIDEEDQGSQISRFLEGY 365 (377)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~ 365 (377)
+.++....+ .+.++.+++..||++.
T Consensus 77 ~~~~~~~~~------~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 77 PKGKKPVDY------EGGRDLEAIVEFVNEK 101 (102)
T ss_pred cCCCcceee------cCCCCHHHHHHHHHhc
Confidence 987642222 5567788999999864
No 140
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.27 E-value=5.1e-06 Score=57.94 Aligned_cols=57 Identities=25% Similarity=0.434 Sum_probs=43.2
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhh-----cCCCcCCEEEEEeCCeeE
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK-----QEIDAFPTLKIFMHGIPT 130 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~-----~~i~~~P~~~~~~~g~~~ 130 (377)
++.|+++||++|+++.+.+.+.. +.+-.+|.++++..... +++.++|++ ++.+|..+
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~---------~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l 63 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG---------AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL 63 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC---------CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe
Confidence 57899999999999988776543 44556888877766555 389999997 57777544
No 141
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=98.26 E-value=4e-06 Score=62.06 Aligned_cols=93 Identities=19% Similarity=0.300 Sum_probs=72.5
Q ss_pred ceecCChHHHHHHHH-ccCCcccEEEeecCC--h---HHHHHHHHHhhhhhHHHHhhcchhhhhhhcCCCCCCeEEEEcC
Q 017126 153 VSILNSDAEVSDFVE-NAGTFFPLFIGFGLD--E---SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQP 226 (377)
Q Consensus 153 ~~~i~~~~~~~~~~~-~~~~~~~~~v~~~~~--~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~l~~~~~ 226 (377)
++.|.+.+++++|+. .++ +.+|||+.+ . ..|..+|..++..+.|+.. .+.++...+++. .|++++++.
T Consensus 2 v~~i~~~~~~e~~~~~~~~---~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~--~~~~~~~~~~~~-~~~i~l~~~ 75 (102)
T cd03066 2 VEIINSERELQAFENIEDD---IKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFAT--FDSKVAKKLGLK-MNEVDFYEP 75 (102)
T ss_pred ceEcCCHHHHHHHhcccCC---eEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEE--CcHHHHHHcCCC-CCcEEEeCC
Confidence 567888889999997 655 477888754 2 3699999999988877655 456777888877 588999987
Q ss_pred CCCCcccc-cCCCCHHHHHHHHHhhC
Q 017126 227 SYNEHNIF-YGPFDEEFLEEFIKQNF 251 (377)
Q Consensus 227 ~~~~~~~~-~g~~~~~~l~~fi~~~~ 251 (377)
.++....| .|..+.++|.+||..+.
T Consensus 76 ~~e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 76 FMEEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCCCcccCCCCCCHHHHHHHHHHhc
Confidence 55666678 78889999999998764
No 142
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.26 E-value=1.6e-05 Score=63.75 Aligned_cols=43 Identities=19% Similarity=0.064 Sum_probs=38.2
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~ 103 (377)
++++++|.|+++||+.|+...|.+.++.+++... .+.+..|+|
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~--~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS--HFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC--CeEEEEEec
Confidence 5688999999999999999999999999998753 388888987
No 143
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=98.26 E-value=3.9e-06 Score=62.31 Aligned_cols=91 Identities=23% Similarity=0.352 Sum_probs=70.1
Q ss_pred ceecCChHHHHHHHHccCCcccEEEeecCCh-----HHHHHHHHHhhhhhHHHHhhcchhhhhhhcCCCCCCeEEEEcC-
Q 017126 153 VSILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQP- 226 (377)
Q Consensus 153 ~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~l~~~~~- 226 (377)
+..+.+.+++++++...+ +.+|+|+.+. ..|..+|..+++.+.|+.. .+..+...+++ .|++++|++
T Consensus 2 ~~~i~s~~~l~~f~~~~~---~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~--~~~~~~~~~~~--~~~ivl~~p~ 74 (104)
T cd03069 2 SVELRTEAEFEKFLSDDD---ASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHT--SDKQLLEKYGY--GEGVVLFRPP 74 (104)
T ss_pred ccccCCHHHHHHHhccCC---cEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEE--ChHHHHHhcCC--CCceEEEech
Confidence 467778888999997655 4788887542 4688999999988877655 45777888888 588999954
Q ss_pred -----CCCCcccccCCCCHHHHHHHHHhh
Q 017126 227 -----SYNEHNIFYGPFDEEFLEEFIKQN 250 (377)
Q Consensus 227 -----~~~~~~~~~g~~~~~~l~~fi~~~ 250 (377)
.+.....|.|+++.++|.+||..+
T Consensus 75 ~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 75 RLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 234556799999999999999875
No 144
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.25 E-value=3.8e-06 Score=61.61 Aligned_cols=91 Identities=25% Similarity=0.360 Sum_probs=70.5
Q ss_pred eecCChHHHHHHHHccCCcccEEEeecCCh-----HHHHHHHHHhhhhhHHHHhhcchhhhhhhcCCCCCCeEEEEcCCC
Q 017126 154 SILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSY 228 (377)
Q Consensus 154 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~l~~~~~~~ 228 (377)
..+.+.++++.++...+ +++|+|+.+. ..|..+|..+++...|+.. .+.++.+.+++.. |++++|++.+
T Consensus 2 ~~i~s~~~l~~~~~~~~---~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~--~~~~~~~~~~~~~-~~i~l~~~~~ 75 (97)
T cd02981 2 KELTSKEELEKFLDKDD---VVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHT--SDKEVAKKLKVKP-GSVVLFKPFE 75 (97)
T ss_pred eecCCHHHHHHHhccCC---eEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEE--ChHHHHHHcCCCC-CceEEeCCcc
Confidence 46777888888876655 4888887542 4688999999887666554 4577777788764 8999999876
Q ss_pred CCcccccCCCCHHHHHHHHHhh
Q 017126 229 NEHNIFYGPFDEEFLEEFIKQN 250 (377)
Q Consensus 229 ~~~~~~~g~~~~~~l~~fi~~~ 250 (377)
+....|.|..+.++|.+||..+
T Consensus 76 ~~~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 76 EEPVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred cCCccCCCCCCHHHHHHHHHhC
Confidence 7778899999999999999753
No 145
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.24 E-value=1.6e-05 Score=59.61 Aligned_cols=104 Identities=10% Similarity=0.125 Sum_probs=75.7
Q ss_pred ccccChhhHHhhh-cCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccc--hhhHHhhcCCCCCCCCCe
Q 017126 255 SVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLPK 330 (377)
Q Consensus 255 ~~~l~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~--~~~~~~~~gi~~~~~~P~ 330 (377)
+.+++.+++.... ..+.+.++.|+. ......+.+...+.++++.+.+ +.|+.+|++. ..++++.+++ ..+|+
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a-~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i---~~~Pt 77 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYA-PWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGV---QGFPT 77 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEEC-CCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCC---CcCCE
Confidence 4577888887754 445667766664 4556667778889999999887 8899999987 7889999999 78999
Q ss_pred EEEEeCCCCceeccCCCCCCcccchhhHHHHHH
Q 017126 331 MVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 363 (377)
Q Consensus 331 l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~ 363 (377)
+++++.++.... .....+.|..+.++|.+||.
T Consensus 78 ~~~~~~~~~~~~-~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 78 LKVFRPPKKASK-HAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEEeCCCcccc-cccccccCccCHHHHHHHhC
Confidence 999998752100 00111356778889999973
No 146
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.20 E-value=1.5e-05 Score=58.94 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=70.7
Q ss_pred CcccccChhhHHhhhcCCCcEEEEEEeCC-ChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCe
Q 017126 253 PLSVPINQDTLNLLKDDKRKIVLAIVEDE-TEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPK 330 (377)
Q Consensus 253 p~~~~l~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~ 330 (377)
..+++++..+++.....+.++++.|...- ..+....+...|.++++++.+ +.|+.+|.+++++++..|++ .+.|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V---~sIPT 86 (111)
T cd02965 10 HGWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGV---LRTPA 86 (111)
T ss_pred cCCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCC---CcCCE
Confidence 34678888899888777788888887643 467778888999999999998 88999999999999999999 88999
Q ss_pred EEEEeCCC
Q 017126 331 MVVWDGNE 338 (377)
Q Consensus 331 l~i~~~~~ 338 (377)
+++++..+
T Consensus 87 li~fkdGk 94 (111)
T cd02965 87 LLFFRDGR 94 (111)
T ss_pred EEEEECCE
Confidence 99998653
No 147
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.19 E-value=2.3e-05 Score=58.71 Aligned_cols=99 Identities=14% Similarity=0.198 Sum_probs=72.2
Q ss_pred cccccChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhC----C---CcEEEEEeccchhhHHhhcCCCCCC
Q 017126 254 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASAN----R---ELVFCYVGIKQFADFADTFEANKKS 326 (377)
Q Consensus 254 ~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~----~---~~~f~~vd~~~~~~~~~~~gi~~~~ 326 (377)
.+.+++.++++.....++++++.|+. .-......+...++++++.+ . .+.|+.+|+..+.++++.+|+ .
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a-~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v---~ 77 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYA-DWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI---N 77 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEEC-CCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC---C
Confidence 35678899998877777777776664 34455566677777777653 2 288999999999999999999 8
Q ss_pred CCCeEEEEeCCC-CceeccCCCCCCcccchhhHHHHH
Q 017126 327 KLPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 362 (377)
Q Consensus 327 ~~P~l~i~~~~~-~~~~~~~~~~~~~~~t~e~i~~Fi 362 (377)
++|++.++...+ ....+ .+..+.++|.+||
T Consensus 78 ~~Ptl~~~~~g~~~~~~~------~g~~~~~~l~~fi 108 (108)
T cd02996 78 KYPTLKLFRNGMMMKREY------RGQRSVEALAEFV 108 (108)
T ss_pred cCCEEEEEeCCcCcceec------CCCCCHHHHHhhC
Confidence 899999997643 22222 4455677888875
No 148
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.18 E-value=1.5e-05 Score=60.39 Aligned_cols=103 Identities=15% Similarity=0.139 Sum_probs=73.0
Q ss_pred cccccChhhHHhhhcC-CCcEEEEEEeCCChH-HHH--HHHHHHHHHHHhC--CC-cEEEEEeccchhhHHhhcCCCCCC
Q 017126 254 LSVPINQDTLNLLKDD-KRKIVLAIVEDETEE-KSQ--KLVTTLKAAASAN--RE-LVFCYVGIKQFADFADTFEANKKS 326 (377)
Q Consensus 254 ~~~~l~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~~--~~~~~l~~~a~~~--~~-~~f~~vd~~~~~~~~~~~gi~~~~ 326 (377)
.+..++.++|+..... +.++++.|...--.+ ..+ .....+.++|.++ .+ +.|+.+|+++++++++.||+ .
T Consensus 10 ~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I---~ 86 (120)
T cd03065 10 RVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL---D 86 (120)
T ss_pred ceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC---c
Confidence 4567788888765444 455555554432212 122 4456777888877 44 99999999999999999999 8
Q ss_pred CCCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHh
Q 017126 327 KLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 366 (377)
Q Consensus 327 ~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~ 366 (377)
++|+++++...+... + .|..+.+.|.+||++..
T Consensus 87 ~iPTl~lfk~G~~v~-~------~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 87 EEDSIYVFKDDEVIE-Y------DGEFAADTLVEFLLDLI 119 (120)
T ss_pred cccEEEEEECCEEEE-e------eCCCCHHHHHHHHHHHh
Confidence 899999998543322 3 45567889999999864
No 149
>PRK10996 thioredoxin 2; Provisional
Probab=98.17 E-value=3.6e-05 Score=60.43 Aligned_cols=100 Identities=11% Similarity=0.213 Sum_probs=76.1
Q ss_pred cccChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEEEE
Q 017126 256 VPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVW 334 (377)
Q Consensus 256 ~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~ 334 (377)
..++...++.+...++++++.|+. ......+.....|.++++++.+ +.|+.+|.++.+++++.+++ .+.|+++++
T Consensus 38 i~~~~~~~~~~i~~~k~vvv~F~a-~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V---~~~Ptlii~ 113 (139)
T PRK10996 38 INATGETLDKLLQDDLPVVIDFWA-PWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRI---RSIPTIMIF 113 (139)
T ss_pred EEcCHHHHHHHHhCCCeEEEEEEC-CCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCC---CccCEEEEE
Confidence 346677777766666777777765 3455556677889999988776 99999999999999999999 889999999
Q ss_pred eCCCCceeccCCCCCCcccchhhHHHHHHHH
Q 017126 335 DGNENYLTVIGSESIDEEDQGSQISRFLEGY 365 (377)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~ 365 (377)
+..+..... .+..+.+.+.+|++..
T Consensus 114 ~~G~~v~~~------~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 114 KNGQVVDML------NGAVPKAPFDSWLNEA 138 (139)
T ss_pred ECCEEEEEE------cCCCCHHHHHHHHHHh
Confidence 744333333 4556788999999864
No 150
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.16 E-value=4.5e-05 Score=63.24 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=72.8
Q ss_pred CCCCccccccC-CCCCEEEeChhhHHHHHcCCCeEEEEEE-CCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc--
Q 017126 30 GLSSEEETKFK-IDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-- 105 (377)
Q Consensus 30 ~~~~~~~~~~~-~~~~v~~l~~~~f~~~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-- 105 (377)
+..+|..+.+. .++....++.++| .+++++|.|| +.||+.|....+.+.++..++.+.+ +.+..|+++.
T Consensus 5 G~~aP~f~l~~~~~g~~~~~sl~d~-----~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~ 77 (187)
T TIGR03137 5 NTEIKPFKATAYHNGEFVEVTDEDV-----KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHF 77 (187)
T ss_pred CCcCCCcEeeeccCCceeEecHHHH-----CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHH
Confidence 44456655543 2344445555544 4579999999 9999999999999999999987543 4455555432
Q ss_pred -----------------------chhhHhhcCCC------cCCEEEEEe-CCeeEe-ecC----CCCHHHHHHHHH
Q 017126 106 -----------------------YSRLASKQEID------AFPTLKIFM-HGIPTE-YYG----PRKAELLVRYLK 146 (377)
Q Consensus 106 -----------------------~~~~~~~~~i~------~~P~~~~~~-~g~~~~-y~g----~~~~~~i~~~~~ 146 (377)
+..+++.||+. ..|+.+++. +|.... +.+ .+..+++.+.+.
T Consensus 78 ~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 78 VHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred HHHHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 23577888886 358888885 576543 211 346777776663
No 151
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.14 E-value=3.7e-05 Score=57.75 Aligned_cols=100 Identities=8% Similarity=0.075 Sum_probs=75.1
Q ss_pred CCcccccChhhHHhh---hcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHH-hhcCCCCCC
Q 017126 252 LPLSVPINQDTLNLL---KDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFA-DTFEANKKS 326 (377)
Q Consensus 252 ~p~~~~l~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~-~~~gi~~~~ 326 (377)
-+.+.+++.+++... ...+.+.++.|+. .-....+.+...+.++|+++++ +.|+.||++.+..++ +.+++ .
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA-~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I---~ 83 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYA-PWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHF---F 83 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCC---c
Confidence 345778899998875 4566777777765 3456667788999999999987 899999999888898 58999 7
Q ss_pred CCCeEEEEeCCCCceeccCCCCCCcccchhhHHHH
Q 017126 327 KLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRF 361 (377)
Q Consensus 327 ~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~F 361 (377)
++|++.++.....-..+ .+..+.+.|..|
T Consensus 84 ~~PTl~lf~~g~~~~~y------~G~~~~~~i~~~ 112 (113)
T cd03006 84 YFPVIHLYYRSRGPIEY------KGPMRAPYMEKF 112 (113)
T ss_pred ccCEEEEEECCccceEE------eCCCCHHHHHhh
Confidence 89999999754322222 455667777776
No 152
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.14 E-value=2.3e-05 Score=67.27 Aligned_cols=85 Identities=20% Similarity=0.226 Sum_probs=66.8
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc-----------hhhHhhcCCCcCCEEEEEeCCe
Q 017126 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-----------SRLASKQEIDAFPTLKIFMHGI 128 (377)
Q Consensus 60 ~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----------~~~~~~~~i~~~P~~~~~~~g~ 128 (377)
.+..+|+||.+.|+.|+++.|.+..+++++. +.+..|+.+.. ...++++||..+|++++...++
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-----i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t 224 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-----ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKS 224 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCC
Confidence 4699999999999999999999999999863 44555554433 4588999999999999998753
Q ss_pred --eEe-ecCCCCHHHHHHHHHhhc
Q 017126 129 --PTE-YYGPRKAELLVRYLKKFV 149 (377)
Q Consensus 129 --~~~-y~g~~~~~~i~~~~~~~~ 149 (377)
... -.|..+.++|.+-+...+
T Consensus 225 ~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 225 QKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred CcEEEEeeccCCHHHHHHHHHHHH
Confidence 333 489999999987765543
No 153
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.14 E-value=4.4e-05 Score=56.19 Aligned_cols=97 Identities=6% Similarity=0.157 Sum_probs=69.7
Q ss_pred ChhhHHhhh-cCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeC
Q 017126 259 NQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (377)
Q Consensus 259 ~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~ 336 (377)
+.+.+.... ..++++++.|+. ........+...++++++++.+ +.|+.+|+...+.+++.||+ ...|++++++.
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~P~~~~~~~ 77 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWA-PWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI---RSIPTLLLFKN 77 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEEC-CCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC---CcCCEEEEEeC
Confidence 344555433 334567776664 4455566777889999988875 99999999998999999999 78999999975
Q ss_pred CCCceeccCCCCCCcccchhhHHHHHHHH
Q 017126 337 NENYLTVIGSESIDEEDQGSQISRFLEGY 365 (377)
Q Consensus 337 ~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~ 365 (377)
.+..... .+..+.+.+.+||++.
T Consensus 78 g~~~~~~------~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 78 GKEVDRS------VGALPKAALKQLINKN 100 (101)
T ss_pred CcEeeee------cCCCCHHHHHHHHHhh
Confidence 4332222 3445678899999864
No 154
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.12 E-value=6.1e-05 Score=56.78 Aligned_cols=98 Identities=11% Similarity=0.192 Sum_probs=72.4
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCCCc
Q 017126 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENY 340 (377)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~~~ 340 (377)
..+......+.++++.|+.+ .....+.....+++++++++++.|..+|.+..+.+++.+++ ...|++++++.....
T Consensus 13 ~~~~~~i~~~~~vvV~f~a~-~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v---~~vPt~l~fk~G~~v 88 (113)
T cd02989 13 KEFFEIVKSSERVVCHFYHP-EFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNI---KVLPTVILFKNGKTV 88 (113)
T ss_pred HHHHHHHhCCCcEEEEEECC-CCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCC---ccCCEEEEEECCEEE
Confidence 55555555567777777753 34555677789999999999999999999999999999999 789999999875322
Q ss_pred eeccCCCCCC--cccchhhHHHHH
Q 017126 341 LTVIGSESID--EEDQGSQISRFL 362 (377)
Q Consensus 341 ~~~~~~~~~~--~~~t~e~i~~Fi 362 (377)
.-..+..++. ++++.++|.+|+
T Consensus 89 ~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 89 DRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEECccccCCCCCCCHHHHHHHh
Confidence 2222222222 567888999887
No 155
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.11 E-value=9.8e-05 Score=72.06 Aligned_cols=178 Identities=15% Similarity=0.127 Sum_probs=113.8
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEe-CCe--eEeecCC
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM-HGI--PTEYYGP 135 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~-~g~--~~~y~g~ 135 (377)
.+...++.|+.+.|..|..+...+++++..- +++.+-..|..++.+++++|++...|++.++. +|+ .+.|.|-
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s----~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~ 440 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFASLS----EKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGV 440 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHhcC----CcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEec
Confidence 3356788899999999998888888887543 35888889999999999999999999999995 553 3678886
Q ss_pred CCHHHHHHHHHhhcCC--CceecCChHHHHHHHHccCC-cccEEEe-ecCChHH----HHHHHHHhhhhhHHHHh-hcch
Q 017126 136 RKAELLVRYLKKFVAP--DVSILNSDAEVSDFVENAGT-FFPLFIG-FGLDESV----MSNLALKYKKKAWFAVA-KDFS 206 (377)
Q Consensus 136 ~~~~~i~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~----~~~~a~~~~~~~~~~~~-~~~~ 206 (377)
=.-.++-.|+.-.+.- .-..+ +++..+.+..-... ..-+|++ -|+..+. .+.++....+ ...... ....
T Consensus 441 P~G~Ef~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~-i~~~~i~~~~~ 518 (555)
T TIGR03143 441 PSGHELNSFILALYNAAGPGQPL-GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN-VEAEMIDVSHF 518 (555)
T ss_pred CccHhHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC-ceEEEEECccc
Confidence 6666666666544322 22333 34333333332222 1112233 2444443 3333333321 111111 1234
Q ss_pred hhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHH
Q 017126 207 EDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFI 247 (377)
Q Consensus 207 ~~~~~~~~v~~~P~l~~~~~~~~~~~~~~g~~~~~~l~~fi 247 (377)
.+++++|++-+.|++++ +....+.|..+.+++.+|+
T Consensus 519 ~~~~~~~~v~~vP~~~i-----~~~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 519 PDLKDEYGIMSVPAIVV-----DDQQVYFGKKTIEEMLELI 554 (555)
T ss_pred HHHHHhCCceecCEEEE-----CCEEEEeeCCCHHHHHHhh
Confidence 67888999999999888 3445677988989998886
No 156
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.10 E-value=3.9e-05 Score=56.15 Aligned_cols=88 Identities=18% Similarity=0.269 Sum_probs=70.6
Q ss_pred hhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCC--
Q 017126 50 ESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG-- 127 (377)
Q Consensus 50 ~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g-- 127 (377)
.+.++.++...++++|-|+.++|+ .....|.++|+.+++ .+.|+.+. ++++.+++++.. |++++|++.
T Consensus 7 ~~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~---~~~F~~~~---~~~~~~~~~~~~-~~i~l~~~~~~ 76 (97)
T cd02981 7 KEELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRD---DYGFGHTS---DKEVAKKLKVKP-GSVVLFKPFEE 76 (97)
T ss_pred HHHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhccc---CCeEEEEC---hHHHHHHcCCCC-CceEEeCCccc
Confidence 345666778889999999999887 567889999998865 38888887 577888887754 999999874
Q ss_pred eeEeecCCCCHHHHHHHHHh
Q 017126 128 IPTEYYGPRKAELLVRYLKK 147 (377)
Q Consensus 128 ~~~~y~g~~~~~~i~~~~~~ 147 (377)
....|.|..+.+.|.+|+..
T Consensus 77 ~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 77 EPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CCccCCCCCCHHHHHHHHHh
Confidence 45569999999999999864
No 157
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.08 E-value=5e-05 Score=55.67 Aligned_cols=96 Identities=10% Similarity=0.216 Sum_probs=73.4
Q ss_pred ccChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCC--C-cEEEEEeccchhhHHhhcCCCCCCCCCeEEE
Q 017126 257 PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (377)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i 333 (377)
.++...+......+++.++.|+.+ .....+.+...+.+++..+. + +.|+.+|+...+.+++.+++ ...|++++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i---~~~Pt~~~ 77 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAP-WCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGV---RGYPTIKL 77 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECC-CCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCC---CCCCEEEE
Confidence 467778887777777777777754 46666778888999998883 3 99999999988999999999 78999999
Q ss_pred EeCCC-CceeccCCCCCCcccchhhHHHHH
Q 017126 334 WDGNE-NYLTVIGSESIDEEDQGSQISRFL 362 (377)
Q Consensus 334 ~~~~~-~~~~~~~~~~~~~~~t~e~i~~Fi 362 (377)
++.++ ...-+ .+..+.+.+.+|+
T Consensus 78 ~~~~~~~~~~~------~g~~~~~~i~~~~ 101 (101)
T cd02961 78 FPNGSKEPVKY------EGPRTLESLVEFI 101 (101)
T ss_pred EcCCCcccccC------CCCcCHHHHHhhC
Confidence 99873 33222 4445677787764
No 158
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.07 E-value=4.2e-05 Score=56.78 Aligned_cols=98 Identities=11% Similarity=0.244 Sum_probs=72.9
Q ss_pred ccccChhhHHhhhcCC-CcEEEEEEeCCChHHHHHHHHHHHHHHHhCC--C-cEEEEEeccc-hhhHHhhcCCCCCCCCC
Q 017126 255 SVPINQDTLNLLKDDK-RKIVLAIVEDETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQ-FADFADTFEANKKSKLP 329 (377)
Q Consensus 255 ~~~l~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~-~~f~~vd~~~-~~~~~~~~gi~~~~~~P 329 (377)
+.+++..++....... ++.++.|+. ........+.+.+..+++.+. + +.++.+|+.. ++++++.+++ ...|
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i---~~~P 77 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYA-PWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGV---SGFP 77 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEEC-CCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCC---CCcC
Confidence 3466777777655443 466666664 456666777888999998876 2 8899999999 8999999999 7899
Q ss_pred eEEEEeCCC-CceeccCCCCCCcccchhhHHHHH
Q 017126 330 KMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFL 362 (377)
Q Consensus 330 ~l~i~~~~~-~~~~~~~~~~~~~~~t~e~i~~Fi 362 (377)
++++++.++ .... +.+..+.++|.+||
T Consensus 78 ~~~~~~~~~~~~~~------~~g~~~~~~l~~~i 105 (105)
T cd02998 78 TLKFFPKGSTEPVK------YEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEEeCCCCCccc------cCCccCHHHHHhhC
Confidence 999998763 2222 35667888998885
No 159
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.07 E-value=6.8e-05 Score=61.93 Aligned_cols=64 Identities=23% Similarity=0.180 Sum_probs=44.7
Q ss_pred CCccccccCCCCCEEEeChhhHHHHHcCCCeE-EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 017126 32 SSEEETKFKIDGKVIELDESNFDSAISSFDYI-LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (377)
Q Consensus 32 ~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~-~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 104 (377)
..|..+..+.++..+.|+ +| .++++ ++.++++||++|+...|.+.++.+++++. .+.+..|+|+
T Consensus 19 ~~p~f~l~d~~G~~vsLs--~~-----~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~--gv~vv~vs~~ 83 (183)
T PTZ00256 19 SFFEFEAIDIDGQLVQLS--KF-----KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ--GLEILAFPCN 83 (183)
T ss_pred cccceEeEcCCCCEEeHH--Hh-----CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC--CcEEEEEecc
Confidence 344544444555555443 22 45654 45568999999999999999999999754 3888888874
No 160
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.06 E-value=5.7e-05 Score=57.00 Aligned_cols=89 Identities=15% Similarity=0.189 Sum_probs=66.7
Q ss_pred cCCCeEEEEEECC----CChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc--chhhHhhcCCCcCCEEEEEe--CC--
Q 017126 58 SSFDYILVDFYAP----WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEIDAFPTLKIFM--HG-- 127 (377)
Q Consensus 58 ~~~~~~~v~f~~~----~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~~~~~~~i~~~P~~~~~~--~g-- 127 (377)
++.++++|++|++ ||..|+..... .++.+.+++ ++.+...|++. ..+++..+++.++|++.++. ++
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~---~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~ 90 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT---RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRM 90 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc---CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCce
Confidence 6789999999999 88888665421 223444433 48888888864 46789999999999999983 33
Q ss_pred eeE-eecCCCCHHHHHHHHHhhcC
Q 017126 128 IPT-EYYGPRKAELLVRYLKKFVA 150 (377)
Q Consensus 128 ~~~-~y~g~~~~~~i~~~~~~~~~ 150 (377)
+.+ ...|..+++++...+.....
T Consensus 91 ~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 91 TIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHh
Confidence 333 48999999999998876543
No 161
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=98.06 E-value=6.5e-05 Score=56.30 Aligned_cols=104 Identities=15% Similarity=0.057 Sum_probs=82.2
Q ss_pred EEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCc--CCEEE
Q 017126 45 VIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA--FPTLK 122 (377)
Q Consensus 45 v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~--~P~~~ 122 (377)
|.++|.+++....+.+.+..++|+++. .-..+.+.+.++|+.+....+++.|+.+|.++.....+.+|++. +|.++
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~~--~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~ 78 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDKD--DLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIA 78 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecch--HHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEE
Confidence 346788899888888888887777333 34788999999999933333459999999999888999999997 89999
Q ss_pred EEeCCe--eEe-ecCCCCHHHHHHHHHhhcC
Q 017126 123 IFMHGI--PTE-YYGPRKAELLVRYLKKFVA 150 (377)
Q Consensus 123 ~~~~g~--~~~-y~g~~~~~~i~~~~~~~~~ 150 (377)
+..... ... +.+..+++.|.+|++....
T Consensus 79 i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 79 IDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 987543 333 5678999999999988764
No 162
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.05 E-value=4.8e-05 Score=59.89 Aligned_cols=83 Identities=13% Similarity=0.090 Sum_probs=59.6
Q ss_pred CCCeEEEEEE-CCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc---------------------hhhHhhcCCC
Q 017126 59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY---------------------SRLASKQEID 116 (377)
Q Consensus 59 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---------------------~~~~~~~~i~ 116 (377)
.+++++|.|| +.||+.|....+.+.++.+.+.+.+ +.+..|..+.. ..+.+.||+.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 99 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVW 99 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence 3689999999 6899999999999999999887533 66666654322 3467778888
Q ss_pred cC---------CEEEEEeC-CeeEe-ecCCCCHHHHHH
Q 017126 117 AF---------PTLKIFMH-GIPTE-YYGPRKAELLVR 143 (377)
Q Consensus 117 ~~---------P~~~~~~~-g~~~~-y~g~~~~~~i~~ 143 (377)
.. |+.+++.. |+... |.|....+.+.+
T Consensus 100 ~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 100 GEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred cccccccCCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence 77 88888864 66553 677665544443
No 163
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.03 E-value=2e-05 Score=58.99 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=68.0
Q ss_pred ceecCChHHHHHHHHccCCcccEEEeecC--C-h---HHHHHHHHHhhhh---hHHHHhhc------chhhhhhhcCCC-
Q 017126 153 VSILNSDAEVSDFVENAGTFFPLFIGFGL--D-E---SVMSNLALKYKKK---AWFAVAKD------FSEDTMVLYDFD- 216 (377)
Q Consensus 153 ~~~i~~~~~~~~~~~~~~~~~~~~v~~~~--~-~---~~~~~~a~~~~~~---~~~~~~~~------~~~~~~~~~~v~- 216 (377)
+..+++ .++++++.+++. ++|-|+. . . +.++.+|.++... ..++-+.. .+.+++++|+|+
T Consensus 3 ~v~L~~-~nF~~~v~~~~~---vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~ 78 (116)
T cd03007 3 CVDLDT-VTFYKVIPKFKY---SLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDK 78 (116)
T ss_pred eeECCh-hhHHHHHhcCCc---EEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCc
Confidence 345544 478899987765 6677766 3 2 3799999888552 22222211 347799999999
Q ss_pred -CCCeEEEEcCCC-CCcccccCC-CCHHHHHHHHHhh
Q 017126 217 -KVPALVALQPSY-NEHNIFYGP-FDEEFLEEFIKQN 250 (377)
Q Consensus 217 -~~P~l~~~~~~~-~~~~~~~g~-~~~~~l~~fi~~~ 250 (377)
++|++.+|+.+. ..+..|.|. ++.+.|.+||+++
T Consensus 79 ~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 79 ESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999752 356789996 9999999999875
No 164
>PRK09381 trxA thioredoxin; Provisional
Probab=98.02 E-value=0.00013 Score=54.73 Aligned_cols=102 Identities=15% Similarity=0.206 Sum_probs=76.1
Q ss_pred ccccChhhHHh-hhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEE
Q 017126 255 SVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (377)
Q Consensus 255 ~~~l~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~ 332 (377)
+.+++..++.. +...+.++++.|+. ............++++++++.+ +.|+.+|++..+.+++.+++ ...|+++
T Consensus 5 v~~~~~~~~~~~v~~~~~~vvv~f~~-~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~ 80 (109)
T PRK09381 5 IIHLTDDSFDTDVLKADGAILVDFWA-EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI---RGIPTLL 80 (109)
T ss_pred ceeeChhhHHHHHhcCCCeEEEEEEC-CCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC---CcCCEEE
Confidence 45666667764 45556777777765 3566667888899999999977 89999999998999999999 7899999
Q ss_pred EEeCCCCceeccCCCCCCcccchhhHHHHHHHHh
Q 017126 333 VWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 366 (377)
Q Consensus 333 i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~ 366 (377)
+++.......+ .+..+.+.|..||+..+
T Consensus 81 ~~~~G~~~~~~------~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNGEVAATK------VGALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCCeEEEEe------cCCCCHHHHHHHHHHhc
Confidence 99744322222 44456788999988754
No 165
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.01 E-value=9.7e-05 Score=60.48 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=60.3
Q ss_pred CCCeEEEEEE-CCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc----------------------------hhh
Q 017126 59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----------------------------SRL 109 (377)
Q Consensus 59 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----------------------------~~~ 109 (377)
++++++|.|| +.||++|....+.+.++++++...+ +.+..|.++.. ..+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 105 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKI 105 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhH
Confidence 4589999999 8999999999999999999997543 55666665322 235
Q ss_pred HhhcCCC------cCCEEEEEeC-CeeEe-ecC----CCCHHHHHHHHHh
Q 017126 110 ASKQEID------AFPTLKIFMH-GIPTE-YYG----PRKAELLVRYLKK 147 (377)
Q Consensus 110 ~~~~~i~------~~P~~~~~~~-g~~~~-y~g----~~~~~~i~~~~~~ 147 (377)
++.|++. ..|+.+++.+ |+... +.+ .+..+.+.+.++.
T Consensus 106 ~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 106 SRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred HHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 5667775 4678888874 54442 422 2456667776654
No 166
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.00 E-value=2.5e-05 Score=55.46 Aligned_cols=60 Identities=18% Similarity=0.344 Sum_probs=44.7
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchh-----hHhhcCCCcCCEEEEEeCCeeE
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR-----LASKQEIDAFPTLKIFMHGIPT 130 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~-----~~~~~~i~~~P~~~~~~~g~~~ 130 (377)
++.|+++||++|+++.+.+.+.. +. ..+.+..||-+.+.. +.+..++.++|++ |-+|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~---~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK---PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC---CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 47899999999999999998876 22 236777777765432 5666799999998 4566544
No 167
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.00 E-value=0.00014 Score=53.66 Aligned_cols=97 Identities=12% Similarity=0.172 Sum_probs=72.0
Q ss_pred ccccChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC--cEEEEEeccchhhHHhhcCCCCCCCCCeEE
Q 017126 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (377)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~ 332 (377)
+.+++.++++.+... +.++.|+. .-....+.....+.+++..+.+ +.|+.+|+.+++.+++.+++ ..+|+++
T Consensus 3 v~~l~~~~f~~~~~~--~~lv~f~a-~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i---~~~Pt~~ 76 (101)
T cd02994 3 VVELTDSNWTLVLEG--EWMIEFYA-PWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFV---TALPTIY 76 (101)
T ss_pred eEEcChhhHHHHhCC--CEEEEEEC-CCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCC---cccCEEE
Confidence 567888888877643 35555554 3456666777888888887653 89999999998999999999 8899999
Q ss_pred EEeCCCCceeccCCCCCCcccchhhHHHHHHH
Q 017126 333 VWDGNENYLTVIGSESIDEEDQGSQISRFLEG 364 (377)
Q Consensus 333 i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~ 364 (377)
++.. ++...+ .+..+.++|.+|+++
T Consensus 77 ~~~~-g~~~~~------~G~~~~~~l~~~i~~ 101 (101)
T cd02994 77 HAKD-GVFRRY------QGPRDKEDLISFIEE 101 (101)
T ss_pred EeCC-CCEEEe------cCCCCHHHHHHHHhC
Confidence 8744 443333 456678899999863
No 168
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.97 E-value=8.1e-05 Score=54.95 Aligned_cols=97 Identities=10% Similarity=0.198 Sum_probs=70.5
Q ss_pred ccccChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC----cEEEEEeccchhhHHhhcCCCCCCCCCe
Q 017126 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE----LVFCYVGIKQFADFADTFEANKKSKLPK 330 (377)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~----~~f~~vd~~~~~~~~~~~gi~~~~~~P~ 330 (377)
+.+++.++++.....+ +.++.|+. .-....+.....+.++++++.+ +.++.+|++....+++.+++ ...|+
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a-~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt 76 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFA-PWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV---RGYPT 76 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEEC-CCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC---CcCCE
Confidence 3467888888766554 56665654 4455666777888888887753 88999999988999999999 78999
Q ss_pred EEEEeCCCCceeccCCCCCCcccchhhHHHHH
Q 017126 331 MVVWDGNENYLTVIGSESIDEEDQGSQISRFL 362 (377)
Q Consensus 331 l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi 362 (377)
+++++.......+ .|..+.++|.+||
T Consensus 77 ~~~~~~g~~~~~~------~G~~~~~~l~~~i 102 (102)
T cd03005 77 LLLFKDGEKVDKY------KGTRDLDSLKEFV 102 (102)
T ss_pred EEEEeCCCeeeEe------eCCCCHHHHHhhC
Confidence 9999654322222 4556777888875
No 169
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.97 E-value=7.7e-05 Score=52.76 Aligned_cols=95 Identities=22% Similarity=0.298 Sum_probs=76.4
Q ss_pred ChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc--chhhHhhcCCC----cCC-EE
Q 017126 49 DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YSRLASKQEID----AFP-TL 121 (377)
Q Consensus 49 ~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~~~~~~~~i~----~~P-~~ 121 (377)
+.++|.+++....-++|+|..+-- .-......+.++|+.+++. -.++-|||.+ .+.+|+++.+. .-| .+
T Consensus 8 d~KdfKKLLRTr~NVLvLy~ks~k-~a~~~Lk~~~~~A~~vkG~---gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~L 83 (112)
T cd03067 8 DHKDFKKLLRTRNNVLVLYSKSAK-SAEALLKLLSDVAQAVKGQ---GTIAWIDCGDSESRKLCKKLKVDPSSKPKPVEL 83 (112)
T ss_pred chHHHHHHHhhcCcEEEEEecchh-hHHHHHHHHHHHHHHhcCc---eeEEEEecCChHHHHHHHHHccCCCCCCCcchh
Confidence 458899999877888888876653 3445667899999998875 6788999987 78899999998 444 45
Q ss_pred EEEeCCeeE-eecCCCCHHHHHHHHHh
Q 017126 122 KIFMHGIPT-EYYGPRKAELLVRYLKK 147 (377)
Q Consensus 122 ~~~~~g~~~-~y~g~~~~~~i~~~~~~ 147 (377)
.-|++|... +|+-..+...|+.|+..
T Consensus 84 kHYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 84 KHYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hcccCCCccccccchhhHHHHHHHhhC
Confidence 678999876 59999999999999864
No 170
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.97 E-value=0.00011 Score=62.29 Aligned_cols=105 Identities=12% Similarity=0.180 Sum_probs=80.9
Q ss_pred CcccccChhhHHhhhcC-----CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCC
Q 017126 253 PLSVPINQDTLNLLKDD-----KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKS 326 (377)
Q Consensus 253 p~~~~l~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~ 326 (377)
..+.+++.++++..... ..++++.|+. .-....+.....+.++++++++ +.|+.+|+..++++++.+++ .
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyA-pWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I---~ 105 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYA-PWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAI---K 105 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEEC-CCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCC---C
Confidence 35778888888875432 3677777775 3456667778889999999987 88999999999999999999 8
Q ss_pred CCCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHhc
Q 017126 327 KLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 367 (377)
Q Consensus 327 ~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~ 367 (377)
++|++++++....+.+. .++.+.++|.+|+..-..
T Consensus 106 ~~PTl~~f~~G~~v~~~------~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 106 GYPTLLLFDKGKMYQYE------GGDRSTEKLAAFALGDFK 140 (224)
T ss_pred cCCEEEEEECCEEEEee------CCCCCHHHHHHHHHHHHH
Confidence 89999999954333332 456788999999888653
No 171
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.95 E-value=5.4e-05 Score=58.28 Aligned_cols=86 Identities=22% Similarity=0.376 Sum_probs=51.8
Q ss_pred eChhhHHHHH-cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhh---cCCCcCCEEEE
Q 017126 48 LDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK---QEIDAFPTLKI 123 (377)
Q Consensus 48 l~~~~f~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~---~~i~~~P~~~~ 123 (377)
++++....+. ...+..++-|..+|||.|....|.+.++++... .+.+-.+.-++++++-.. .|...+|++++
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~ 103 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKELMDQYLTNGGRSIPTFIF 103 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEE
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChhHHHHHHhCCCeecCEEEE
Confidence 3444444333 233567888899999999999999999999753 366767766778777655 46889999999
Q ss_pred EeC-CeeEeecCCCC
Q 017126 124 FMH-GIPTEYYGPRK 137 (377)
Q Consensus 124 ~~~-g~~~~y~g~~~ 137 (377)
+.+ |+.+..-|++.
T Consensus 104 ~d~~~~~lg~wgerP 118 (129)
T PF14595_consen 104 LDKDGKELGRWGERP 118 (129)
T ss_dssp E-TT--EEEEEESS-
T ss_pred EcCCCCEeEEEcCCC
Confidence 964 67776566553
No 172
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.95 E-value=0.00012 Score=58.31 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=36.0
Q ss_pred CeEEEEE-ECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchh
Q 017126 61 DYILVDF-YAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR 108 (377)
Q Consensus 61 ~~~~v~f-~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~ 108 (377)
++++|.| ++.||+.|+...|.+.++.+++.+. .+.+..|+.+....
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~--~v~vv~V~~~~~~~ 70 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDAL--GVELVAVGPESPEK 70 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhc--CeEEEEEeCCCHHH
Confidence 4555555 5999999999999999999998753 38888888765543
No 173
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.95 E-value=0.00011 Score=54.38 Aligned_cols=97 Identities=9% Similarity=0.215 Sum_probs=71.4
Q ss_pred ccccChhhHHhhh-cCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC---cEEEEEeccchhhHHhhcCCCCCCCCCe
Q 017126 255 SVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE---LVFCYVGIKQFADFADTFEANKKSKLPK 330 (377)
Q Consensus 255 ~~~l~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~---~~f~~vd~~~~~~~~~~~gi~~~~~~P~ 330 (377)
+.+++.++++... ..++++++.|+. ......+.+...+.++++.+.+ +.|+.+|+..+ +.+..+++ .++|+
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~---~~~Pt 76 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYA-PWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVV---DGFPT 76 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEEC-CCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccC---CCCCE
Confidence 5678888887754 444677766665 4456667788899999988765 88999999875 57777877 78999
Q ss_pred EEEEeCCC--CceeccCCCCCCcccchhhHHHHH
Q 017126 331 MVVWDGNE--NYLTVIGSESIDEEDQGSQISRFL 362 (377)
Q Consensus 331 l~i~~~~~--~~~~~~~~~~~~~~~t~e~i~~Fi 362 (377)
+.++..++ ....+ .++.+.++|.+||
T Consensus 77 ~~~~~~~~~~~~~~~------~g~~~~~~l~~fi 104 (104)
T cd02995 77 ILFFPAGDKSNPIKY------EGDRTLEDLIKFI 104 (104)
T ss_pred EEEEcCCCcCCceEc------cCCcCHHHHHhhC
Confidence 99998764 22222 5667788888885
No 174
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.95 E-value=0.0001 Score=55.64 Aligned_cols=104 Identities=15% Similarity=0.233 Sum_probs=73.1
Q ss_pred cccccChhhHHhhhcCC---CcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCe
Q 017126 254 LSVPINQDTLNLLKDDK---RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPK 330 (377)
Q Consensus 254 ~~~~l~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~ 330 (377)
.+.+++.+.+....... .++++.|+.+ .....+.+...+++++.++.++.|+.+|+++. .+++.+++ ...|+
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~-~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i---~~~Pt 79 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEP-GFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDI---KVLPT 79 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCC-CCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCC---CcCCE
Confidence 34566666776543332 6777777653 44555678889999999999999999999987 99999999 78999
Q ss_pred EEEEeCCCCceeccCCCCCC-cccchhhHHHHH
Q 017126 331 MVVWDGNENYLTVIGSESID-EEDQGSQISRFL 362 (377)
Q Consensus 331 l~i~~~~~~~~~~~~~~~~~-~~~t~e~i~~Fi 362 (377)
++++...+...-..|..++. ...+.+.|.+|+
T Consensus 80 ~~~f~~G~~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 80 LLVYKNGELIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEEECCEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence 99998754333333322222 445667777765
No 175
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.94 E-value=9.6e-05 Score=52.60 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=54.3
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcch----hhHhhcC--CCcCCEEEEEeCCeeEeecCCC
Q 017126 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS----RLASKQE--IDAFPTLKIFMHGIPTEYYGPR 136 (377)
Q Consensus 63 ~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~----~~~~~~~--i~~~P~~~~~~~g~~~~y~g~~ 136 (377)
-++.|+.+||++|+++.+.++++..+.++ +.+..+|.+.++ ++.+..+ +..+|+++ .+|+.+.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~----i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig----- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDD----FDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG----- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccC----CcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc-----
Confidence 36789999999999999999999876432 778888887653 4544444 47899986 4776552
Q ss_pred CHHHHHHHHHhhc
Q 017126 137 KAELLVRYLKKFV 149 (377)
Q Consensus 137 ~~~~i~~~~~~~~ 149 (377)
..+++.+++..++
T Consensus 71 g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 GCTDFEAYVKENL 83 (85)
T ss_pred CHHHHHHHHHHhc
Confidence 2356666665543
No 176
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.93 E-value=0.00016 Score=58.71 Aligned_cols=64 Identities=19% Similarity=0.269 Sum_probs=44.6
Q ss_pred CCCCccccccCCCCCEEEeChhhHHHHHcCCCeEEEEEECCC-ChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 017126 30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPW-CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (377)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~v~f~~~~-C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 104 (377)
+...|..+..+.++..+.+. +| .+++++|.||+.| |+.|....|.+.++++++. ++.+..|+++
T Consensus 21 G~~~P~f~l~~~~g~~v~l~--~~-----~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D 85 (167)
T PRK00522 21 GDKAPDFTLVANDLSDVSLA--DF-----AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISAD 85 (167)
T ss_pred CCCCCCeEEEcCCCcEEehH--Hh-----CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCC
Confidence 44455555444444433332 22 4679999999999 9999999999999988873 2667777665
No 177
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.93 E-value=0.00024 Score=60.70 Aligned_cols=180 Identities=12% Similarity=0.167 Sum_probs=113.1
Q ss_pred HHHHccCCcccEEEeecCCh--------HHHHHHHHHhhh---hhHHHHh-hcchhhhhhhcCCCCCCeEEEEcCCCCCc
Q 017126 164 DFVENAGTFFPLFIGFGLDE--------SVMSNLALKYKK---KAWFAVA-KDFSEDTMVLYDFDKVPALVALQPSYNEH 231 (377)
Q Consensus 164 ~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~~~~---~~~~~~~-~~~~~~~~~~~~v~~~P~l~~~~~~~~~~ 231 (377)
+|+... ....|+|.|+..+ +.|.++...+++ ...++-. ...-..++.++++.++|+|.+++. +..
T Consensus 36 kFkdnk-dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kg--d~a 112 (468)
T KOG4277|consen 36 KFKDNK-DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKG--DHA 112 (468)
T ss_pred Hhhhcc-cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecC--Cee
Confidence 444433 3347999998653 578888777765 2222211 123466788999999999999986 677
Q ss_pred ccccCCCCHHHHHHHHHhhCCCcccccChhh--HHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 017126 232 NIFYGPFDEEFLEEFIKQNFLPLSVPINQDT--LNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVG 309 (377)
Q Consensus 232 ~~~~g~~~~~~l~~fi~~~~~p~~~~l~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd 309 (377)
..|.|.++.++|.+|.....-|.+..++.+. ++.+...++|..++|.. ...+- .+.+-.+|.+. +.+++.-
T Consensus 113 ~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gt-ge~PL----~d~fidAASe~--~~~a~Ff 185 (468)
T KOG4277|consen 113 IDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGT-GEGPL----FDAFIDAASEK--FSVARFF 185 (468)
T ss_pred eecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeC-CCCcH----HHHHHHHhhhh--eeeeeee
Confidence 8899999999999999999999999888744 56677778888876653 33332 22333333322 2333332
Q ss_pred ccchhhHHhhcCCCCCCCCCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHH
Q 017126 310 IKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 364 (377)
Q Consensus 310 ~~~~~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~ 364 (377)
... .+++-... .....|+++++.-+ .|.. .++...+.+..||.+
T Consensus 186 Sas-eeVaPe~~--~~kempaV~VFKDe-tf~i-------~de~dd~dLseWinR 229 (468)
T KOG4277|consen 186 SAS-EEVAPEEN--DAKEMPAVAVFKDE-TFEI-------EDEGDDEDLSEWINR 229 (468)
T ss_pred ccc-cccCCccc--chhhccceEEEccc-eeEE-------EecCchhHHHHHHhH
Confidence 222 22222221 23667999998754 3433 222334578888865
No 178
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.92 E-value=8.1e-05 Score=63.56 Aligned_cols=86 Identities=17% Similarity=0.146 Sum_probs=66.0
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc---------hhhHhhcCCCcCCEEEEEeCCe--
Q 017126 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY---------SRLASKQEIDAFPTLKIFMHGI-- 128 (377)
Q Consensus 60 ~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---------~~~~~~~~i~~~P~~~~~~~g~-- 128 (377)
++..|++||.+.|+.|+.+.|.+..+++.+. -.+..+.+|..-. ...++++||..+|++++...++
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG---LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGS 219 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCc
Confidence 4589999999999999999999999999863 1255555554322 3467899999999999998753
Q ss_pred eEe-ecCCCCHHHHHHHHHhh
Q 017126 129 PTE-YYGPRKAELLVRYLKKF 148 (377)
Q Consensus 129 ~~~-y~g~~~~~~i~~~~~~~ 148 (377)
... -.|..+.++|.+-+...
T Consensus 220 ~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 220 VRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred EEEEeeccCCHHHHHHHHHHH
Confidence 333 47999999988766544
No 179
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.92 E-value=0.00012 Score=54.30 Aligned_cols=98 Identities=10% Similarity=0.223 Sum_probs=71.7
Q ss_pred ccccChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCC--C-cEEEEEeccc--hhhHHhhcCCCCCCCCC
Q 017126 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--E-LVFCYVGIKQ--FADFADTFEANKKSKLP 329 (377)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~-~~f~~vd~~~--~~~~~~~~gi~~~~~~P 329 (377)
+.+++..+++.....+++.++.|+.+ ...........+.++++.+. + +.|+.+|+.. ++.+++.+|+ ..+|
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~-wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i---~~~P 77 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAP-WCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV---KGFP 77 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECC-CCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC---cccc
Confidence 45677778887777777777777653 45556667777888887765 3 8888899987 8899999999 7899
Q ss_pred eEEEEeCCCCceeccCCCCCCcccchhhHHHHH
Q 017126 330 KMVVWDGNENYLTVIGSESIDEEDQGSQISRFL 362 (377)
Q Consensus 330 ~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi 362 (377)
++++++..+....+ .+..+.+.+.+||
T Consensus 78 t~~~~~~g~~~~~~------~g~~~~~~l~~~l 104 (104)
T cd02997 78 TFKYFENGKFVEKY------EGERTAEDIIEFM 104 (104)
T ss_pred EEEEEeCCCeeEEe------CCCCCHHHHHhhC
Confidence 99999865433332 4556677888775
No 180
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.92 E-value=9.5e-05 Score=55.51 Aligned_cols=76 Identities=17% Similarity=0.362 Sum_probs=50.0
Q ss_pred hhHHHHH----cCCCeEEEEEECC-------CChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc-----h--hhHh-
Q 017126 51 SNFDSAI----SSFDYILVDFYAP-------WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-----S--RLAS- 111 (377)
Q Consensus 51 ~~f~~~~----~~~~~~~v~f~~~-------~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----~--~~~~- 111 (377)
++|.+++ +++++++|+|+++ ||+.|....|...++-....+ ...+..|...+- + .+-.
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---HHHHC-TTSHHHH-
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCHHHhCCCCCCceEc
Confidence 4566665 3558999999964 999999999999998876433 377777776322 2 2333
Q ss_pred -hcCCCcCCEEEEEeCCee
Q 017126 112 -KQEIDAFPTLKIFMHGIP 129 (377)
Q Consensus 112 -~~~i~~~P~~~~~~~g~~ 129 (377)
++++.++|||+-+..++.
T Consensus 83 p~~~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 83 PDLKLKGIPTLIRWETGER 101 (119)
T ss_dssp -CC---SSSEEEECTSS-E
T ss_pred ceeeeeecceEEEECCCCc
Confidence 599999999999987743
No 181
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.91 E-value=0.00023 Score=56.99 Aligned_cols=66 Identities=24% Similarity=0.313 Sum_probs=45.2
Q ss_pred CCCCccccccCCCCCEEEeChhhHHHHHcCCCeEEEEEECC-CChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 017126 30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAP-WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (377)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~v~f~~~-~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 104 (377)
+..+|..+..+.++..+.+.+ + ++++++|.||+. ||+.|....+.+.++.+.+++.+ +.+..|+.+
T Consensus 7 g~~~p~f~l~~~~G~~~~l~~--~-----~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d 73 (154)
T PRK09437 7 GDIAPKFSLPDQDGEQVSLTD--F-----QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTD 73 (154)
T ss_pred CCcCCCcEeeCCCCCEEeHHH--h-----CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCC
Confidence 444555555555555444422 2 458899999975 68889999999999999887543 666666654
No 182
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.91 E-value=0.0003 Score=58.05 Aligned_cols=110 Identities=19% Similarity=0.181 Sum_probs=73.2
Q ss_pred CCCccccccC-CCCCEEEeChhhHHHHHcCCCeEEEEEE-CCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC----
Q 017126 31 LSSEEETKFK-IDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD---- 104 (377)
Q Consensus 31 ~~~~~~~~~~-~~~~v~~l~~~~f~~~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---- 104 (377)
..+|..+.+. .++....++-++| .++++++.|| +.||+.|....+.+.+...++.+.+ +.+..|+++
T Consensus 6 ~~~p~f~~~~~~~g~~~~v~L~d~-----~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~~~ 78 (187)
T PRK10382 6 TKIKPFKNQAFKNGEFIEVTEKDT-----EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTHFT 78 (187)
T ss_pred CcCCCcEEEEEeCCcceEEEHHHh-----CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCHHH
Confidence 3445544322 1345555555544 4578999999 9999999999999999999986543 445555543
Q ss_pred ---------------------cchhhHhhcCC----CcC--CEEEEEe-CCeeEe---e--cCCCCHHHHHHHHHh
Q 017126 105 ---------------------KYSRLASKQEI----DAF--PTLKIFM-HGIPTE---Y--YGPRKAELLVRYLKK 147 (377)
Q Consensus 105 ---------------------~~~~~~~~~~i----~~~--P~~~~~~-~g~~~~---y--~g~~~~~~i~~~~~~ 147 (377)
.+..+++.||+ .+. |+.++.. +|+... + ...++.+++.+.+..
T Consensus 79 ~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 79 HKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred HHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 23467888998 356 9999997 465432 2 224678888877743
No 183
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.89 E-value=0.00049 Score=53.13 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=81.2
Q ss_pred CEEEeChhhHHH-HHcCCCeEEEEEECC--CCh-hH-hhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCC--
Q 017126 44 KVIELDESNFDS-AISSFDYILVDFYAP--WCG-HC-KRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID-- 116 (377)
Q Consensus 44 ~v~~l~~~~f~~-~~~~~~~~~v~f~~~--~C~-~C-~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~-- 116 (377)
.+++|+..+.-. .-...+..+|.|-.. .|. .+ ..+...+.++|+.+++. .+.|+-+|.++...+.+.||+.
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk--~i~Fv~vd~~~~~~~~~~fgl~~~ 80 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK--PWGWLWTEAGAQLDLEEALNIGGF 80 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC--cEEEEEEeCcccHHHHHHcCCCcc
Confidence 678888776644 344556666666532 122 12 46788899999988752 3999999999999999999995
Q ss_pred cCCEEEEEeCCe-eEe-ecCCCCHHHHHHHHHhhcCCCc
Q 017126 117 AFPTLKIFMHGI-PTE-YYGPRKAELLVRYLKKFVAPDV 153 (377)
Q Consensus 117 ~~P~~~~~~~g~-~~~-y~g~~~~~~i~~~~~~~~~~~~ 153 (377)
++|+++++...+ ... +.|..+.+.|.+|+...+...+
T Consensus 81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 499999998644 333 6799999999999999987654
No 184
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.88 E-value=4e-05 Score=60.66 Aligned_cols=82 Identities=18% Similarity=0.325 Sum_probs=58.1
Q ss_pred EEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHH-HHH--HHHHHhhcCCCCeEEEEEeCCcchhhHhhc--------C
Q 017126 46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAP-QLD--EAAPILAKLKEPIVIAKVDADKYSRLASKQ--------E 114 (377)
Q Consensus 46 ~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~-~~~--~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~ 114 (377)
...+++.|+.+-++++++||.++.+||+.|+.+.. .|. +++..+++. +.-++||.++-|++-+.| |
T Consensus 23 ~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDree~Pdid~~y~~~~~~~~~ 99 (163)
T PF03190_consen 23 QPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDREERPDIDKIYMNAVQAMSG 99 (163)
T ss_dssp B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEETTT-HHHHHHHHHHHHHHHS
T ss_pred ccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEeccccCccHHHHHHHHHHHhcC
Confidence 45667888888899999999999999999998876 343 477777653 889999999999998888 7
Q ss_pred CCcCCEEEEEeC-CeeE
Q 017126 115 IDAFPTLKIFMH-GIPT 130 (377)
Q Consensus 115 i~~~P~~~~~~~-g~~~ 130 (377)
..|+|+-++..+ |+++
T Consensus 100 ~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 100 SGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp ---SSEEEEE-TTS-EE
T ss_pred CCCCCceEEECCCCCee
Confidence 899999999875 6665
No 185
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.88 E-value=0.00015 Score=54.58 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=66.0
Q ss_pred CCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC--cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCCCceeccCC
Q 017126 269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGS 346 (377)
Q Consensus 269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~ 346 (377)
.++|+++.|+.+ -....+.....+.++++++++ +.++.+|+...+.+++.+|+ .+.|++++++..+.....
T Consensus 23 ~~~~vlV~F~a~-wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V---~~~Pt~~i~~~g~~~~~~--- 95 (111)
T cd02963 23 FKKPYLIKITSD-WCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGA---HSVPAIVGIINGQVTFYH--- 95 (111)
T ss_pred CCCeEEEEEECC-ccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCC---ccCCEEEEEECCEEEEEe---
Confidence 457888877753 455556777788888888863 88999999988999999999 889999999854333222
Q ss_pred CCCCcccchhhHHHHHHH
Q 017126 347 ESIDEEDQGSQISRFLEG 364 (377)
Q Consensus 347 ~~~~~~~t~e~i~~Fi~~ 364 (377)
.+..+.+.|.+||++
T Consensus 96 ---~G~~~~~~l~~~i~~ 110 (111)
T cd02963 96 ---DSSFTKQHVVDFVRK 110 (111)
T ss_pred ---cCCCCHHHHHHHHhc
Confidence 566678899999875
No 186
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.88 E-value=0.00014 Score=53.45 Aligned_cols=84 Identities=6% Similarity=0.083 Sum_probs=65.6
Q ss_pred cCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEecc-chhhHHhhcCCCCCCCCCeEEEEeCCCCceeccCC
Q 017126 268 DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIK-QFADFADTFEANKKSKLPKMVVWDGNENYLTVIGS 346 (377)
Q Consensus 268 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~-~~~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~ 346 (377)
..++++++.|+. .-....+.....+.++++.++++.|+.+|.. +++.+++.+++ ..+|++++++.+ ....+
T Consensus 16 ~~g~~vlV~F~a-~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V---~~~PT~~lf~~g-~~~~~--- 87 (100)
T cd02999 16 NREDYTAVLFYA-SWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGV---VGFPTILLFNST-PRVRY--- 87 (100)
T ss_pred cCCCEEEEEEEC-CCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCC---eecCEEEEEcCC-ceeEe---
Confidence 345777777764 3456667888899999999988889999998 78999999999 789999999866 33333
Q ss_pred CCCCcccchhhHHHHH
Q 017126 347 ESIDEEDQGSQISRFL 362 (377)
Q Consensus 347 ~~~~~~~t~e~i~~Fi 362 (377)
.|..+.+.|.+|+
T Consensus 88 ---~G~~~~~~l~~f~ 100 (100)
T cd02999 88 ---NGTRTLDSLAAFY 100 (100)
T ss_pred ---cCCCCHHHHHhhC
Confidence 4556788888885
No 187
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.84 E-value=0.00019 Score=54.93 Aligned_cols=116 Identities=11% Similarity=0.134 Sum_probs=81.6
Q ss_pred HHHHHHhhCCCcccccChhhHHhhhcCCCcEEEEEEeC-CChHHHHHHHHHHHHHHHhCC-C-cEEEEEeccchhhHHhh
Q 017126 243 LEEFIKQNFLPLSVPINQDTLNLLKDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANR-E-LVFCYVGIKQFADFADT 319 (377)
Q Consensus 243 l~~fi~~~~~p~~~~l~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~l~~~a~~~~-~-~~f~~vd~~~~~~~~~~ 319 (377)
|.+=+..+.+| .++..++..+...+.-.++++-.+ ....+.....-+|.+++++|. + +.|+.+|.++++.++..
T Consensus 10 l~~rl~~~g~~---~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~ 86 (132)
T PRK11509 10 LWQRMLARGWT---PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDR 86 (132)
T ss_pred HHHHHHHcCCC---ccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHH
Confidence 33334434444 455577777665555555444322 223555677789999999998 3 89999999999999999
Q ss_pred cCCCCCCCCCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHhcCcc
Q 017126 320 FEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRT 370 (377)
Q Consensus 320 ~gi~~~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~Gkl 370 (377)
||+ ...|++++++..+.-... .+-.+++.+.+||+.++.--.
T Consensus 87 fgV---~siPTLl~FkdGk~v~~i------~G~~~k~~l~~~I~~~L~~~~ 128 (132)
T PRK11509 87 FGV---FRFPATLVFTGGNYRGVL------NGIHPWAELINLMRGLVEPQQ 128 (132)
T ss_pred cCC---ccCCEEEEEECCEEEEEE------eCcCCHHHHHHHHHHHhcCcC
Confidence 999 889999999976332222 445567899999999887543
No 188
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.82 E-value=0.00011 Score=58.18 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=52.5
Q ss_pred CCCCccccccCCCCCEEEeChhhHHHHHcCCCeEEEEEECCC-ChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc--
Q 017126 30 GLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFYAPW-CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-- 106 (377)
Q Consensus 30 ~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~v~f~~~~-C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-- 106 (377)
+..+|..+..+.++..+.|. +| .+++++|.||+.| |++|+...|.+.++.+++. .+.+..|+.+..
T Consensus 3 G~~aP~f~l~~~~g~~~~l~--~~-----~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~~~~ 71 (143)
T cd03014 3 GDKAPDFTLVTSDLSEVSLA--DF-----AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADLPFA 71 (143)
T ss_pred CCCCCCcEEECCCCcEEeHH--Hh-----CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCCHHH
Confidence 34455555555555554443 22 4589999999998 6999999999999998864 377888887543
Q ss_pred -hhhHhhcCCCcCC
Q 017126 107 -SRLASKQEIDAFP 119 (377)
Q Consensus 107 -~~~~~~~~i~~~P 119 (377)
....+++++..+|
T Consensus 72 ~~~~~~~~~~~~~~ 85 (143)
T cd03014 72 QKRWCGAEGVDNVT 85 (143)
T ss_pred HHHHHHhcCCCCce
Confidence 2334444443344
No 189
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=97.81 E-value=6.3e-05 Score=55.98 Aligned_cols=93 Identities=18% Similarity=0.279 Sum_probs=69.0
Q ss_pred ceecCChHHHHHHHHccCCcccEEEeecCCh-----HHHHHHHHHhhhhhHHHHhhcchhhhhhhcCCCCCCeEEEEcC-
Q 017126 153 VSILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQP- 226 (377)
Q Consensus 153 ~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~l~~~~~- 226 (377)
++.+.+.++++.++..... +.+|+|+.+. ..|..+|..+++.+.|+.. .+..+...+++.. |.+++|++
T Consensus 2 v~~i~s~~ele~f~~~~~~--~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t--~~~~~~~~~~~~~-~~vvl~rp~ 76 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDD--VIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHT--FDSEIFKSLKVSP-GQLVVFQPE 76 (107)
T ss_pred ceEcCCHHHHHHHHhcCCC--EEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEE--ChHHHHHhcCCCC-CceEEECcH
Confidence 5778888899999876522 4778877441 4688899999988877655 4467778888874 77889855
Q ss_pred -----CCCCcccccCC-CCHHH-HHHHHHhh
Q 017126 227 -----SYNEHNIFYGP-FDEEF-LEEFIKQN 250 (377)
Q Consensus 227 -----~~~~~~~~~g~-~~~~~-l~~fi~~~ 250 (377)
-......|+|. .+.++ |..||+.|
T Consensus 77 ~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 77 KFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 34456678888 77766 99999864
No 190
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=0.00026 Score=52.24 Aligned_cols=79 Identities=22% Similarity=0.327 Sum_probs=69.2
Q ss_pred hhhHHHHH--cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCC
Q 017126 50 ESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG 127 (377)
Q Consensus 50 ~~~f~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g 127 (377)
....+.++ +..+.++|.|-..|.+.|......+.++++.+.+. ..++.||.++-+++.+-|++...|++.+|-++
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence 34556666 56689999999999999999999999999999875 88999999999999999999999999999887
Q ss_pred eeEe
Q 017126 128 IPTE 131 (377)
Q Consensus 128 ~~~~ 131 (377)
+-+.
T Consensus 88 kHmk 91 (142)
T KOG3414|consen 88 KHMK 91 (142)
T ss_pred ceEE
Confidence 6553
No 191
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.80 E-value=0.00016 Score=61.99 Aligned_cols=83 Identities=16% Similarity=0.271 Sum_probs=59.9
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEE---------------------------------------
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIA--------------------------------------- 99 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~--------------------------------------- 99 (377)
+.+..++.|+.+.|++|+++++++.++.+. + -.+.+.
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~--v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--G--ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--C--eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 346789999999999999999998876431 0 001111
Q ss_pred ---EEeCCcchhhHhhcCCCcCCEEEEEeCCeeEeecCCCCHHHHHHHHHhh
Q 017126 100 ---KVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKF 148 (377)
Q Consensus 100 ---~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~i~~~~~~~ 148 (377)
..+..++.++++++||.++|+++ +.+|+.+ .|..+.+.|.+++.+.
T Consensus 182 ~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~--~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 182 ASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV--PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccccchHHHhHHHHHHcCCccccEEE-EcCCeEe--eCCCCHHHHHHHHHHc
Confidence 01112345689999999999999 7788765 6888999999988754
No 192
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.80 E-value=0.00033 Score=51.07 Aligned_cols=84 Identities=15% Similarity=0.258 Sum_probs=64.3
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCCCceeccCCCC
Q 017126 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSES 348 (377)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~~ 348 (377)
++++++.|+. ......+.....+.+++..+.+ +.++.+|++..+.+++.|++ ..+|++++++.......+
T Consensus 12 ~~~vlv~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i---~~~Pt~~~~~~g~~~~~~----- 82 (96)
T cd02956 12 QVPVVVDFWA-PRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGV---QALPTVYLFAAGQPVDGF----- 82 (96)
T ss_pred CCeEEEEEEC-CCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCC---CCCCEEEEEeCCEEeeee-----
Confidence 4677777765 4456667778889999999877 88999999999999999999 789999999843222222
Q ss_pred CCcccchhhHHHHHH
Q 017126 349 IDEEDQGSQISRFLE 363 (377)
Q Consensus 349 ~~~~~t~e~i~~Fi~ 363 (377)
.+..+.+.|..|++
T Consensus 83 -~g~~~~~~l~~~l~ 96 (96)
T cd02956 83 -QGAQPEEQLRQMLD 96 (96)
T ss_pred -cCCCCHHHHHHHhC
Confidence 45566788888874
No 193
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.77 E-value=0.00015 Score=57.21 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=38.5
Q ss_pred CCCeEEEEEECCCChh-HhhHHHHHHHHHHHhhcCC-CCeEEEEEeCC
Q 017126 59 SFDYILVDFYAPWCGH-CKRLAPQLDEAAPILAKLK-EPIVIAKVDAD 104 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~a~~~~~~~-~~v~~~~vd~~ 104 (377)
.+++++|.||++||+. |....+.+.++.+.+.+.+ .++.+..|+++
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 5689999999999997 9999999999999997643 34777777764
No 194
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.00018 Score=52.67 Aligned_cols=74 Identities=23% Similarity=0.405 Sum_probs=56.8
Q ss_pred hhhHHHHH---cCCCeEEEEEEC--------CCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc-------hhhHh
Q 017126 50 ESNFDSAI---SSFDYILVDFYA--------PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-------SRLAS 111 (377)
Q Consensus 50 ~~~f~~~~---~~~~~~~v~f~~--------~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-------~~~~~ 111 (377)
.+.|++.+ ++++-++|+|++ +||+.|.+.+|.+.++-+... .++.|..|+..+- ..+..
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap---~~~~~v~v~VG~rp~Wk~p~n~FR~ 88 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP---EDVHFVHVYVGNRPYWKDPANPFRK 88 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC---CceEEEEEEecCCCcccCCCCcccc
Confidence 36677766 455679999996 599999999999999887443 3599999998542 34566
Q ss_pred hcCC-CcCCEEEEEeC
Q 017126 112 KQEI-DAFPTLKIFMH 126 (377)
Q Consensus 112 ~~~i-~~~P~~~~~~~ 126 (377)
..++ .++||++=|.+
T Consensus 89 d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 89 DPGILTAVPTLLRWKR 104 (128)
T ss_pred CCCceeecceeeEEcC
Confidence 6677 88999998874
No 195
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.76 E-value=0.00057 Score=53.83 Aligned_cols=101 Identities=9% Similarity=0.133 Sum_probs=73.8
Q ss_pred HHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccc--hhhHHhhcCCCCCCCCCeEEEEeCCCC
Q 017126 263 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWDGNEN 339 (377)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~--~~~~~~~~gi~~~~~~P~l~i~~~~~~ 339 (377)
++.....++++++.|+. .-..........+.++++++.+ +.|+.+|.+. ....++.|++ ...|++++++.+++
T Consensus 13 ~~~a~~~gk~vvV~F~A-~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V---~~iPt~v~~~~~G~ 88 (142)
T cd02950 13 PEVALSNGKPTLVEFYA-DWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV---DGIPHFVFLDREGN 88 (142)
T ss_pred HHHHHhCCCEEEEEEEC-CcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC---CCCCEEEEECCCCC
Confidence 44455566788877764 3456667778889999998876 7787776654 3578899999 78999999987654
Q ss_pred ceeccCCCCCCcccchhhHHHHHHHHhcCcccc
Q 017126 340 YLTVIGSESIDEEDQGSQISRFLEGYREGRTEQ 372 (377)
Q Consensus 340 ~~~~~~~~~~~~~~t~e~i~~Fi~~~~~Gkl~~ 372 (377)
-... +.|..+.+.+.++|+.+++|.-.|
T Consensus 89 ~v~~-----~~G~~~~~~l~~~l~~l~~~~~~~ 116 (142)
T cd02950 89 EEGQ-----SIGLQPKQVLAQNLDALVAGEPLP 116 (142)
T ss_pred EEEE-----EeCCCCHHHHHHHHHHHHcCCCCC
Confidence 3222 245567889999999999988333
No 196
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.75 E-value=0.00022 Score=48.81 Aligned_cols=67 Identities=22% Similarity=0.291 Sum_probs=44.2
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhh----cCCCcCCEEEEEeCCeeEeecCCCCHH
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK----QEIDAFPTLKIFMHGIPTEYYGPRKAE 139 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~----~~i~~~P~~~~~~~g~~~~y~g~~~~~ 139 (377)
++.|+++||++|+++...+.+. .+.+..+|.+.++...+. .++.++|++.+ +|..+ .| .+..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~---------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~~i--~g-~~~~ 67 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER---------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDEHL--SG-FRPD 67 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC---------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCEEE--ec-CCHH
Confidence 5789999999999987766552 266677788766554443 37889999976 44322 22 4445
Q ss_pred HHHHH
Q 017126 140 LLVRY 144 (377)
Q Consensus 140 ~i~~~ 144 (377)
.|.++
T Consensus 68 ~l~~~ 72 (73)
T cd02976 68 KLRAL 72 (73)
T ss_pred HHHhh
Confidence 55543
No 197
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.73 E-value=0.00034 Score=52.35 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=71.1
Q ss_pred EeChhhHHHHHcCCCeEEEEE---ECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCc----CC
Q 017126 47 ELDESNFDSAISSFDYILVDF---YAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA----FP 119 (377)
Q Consensus 47 ~l~~~~f~~~~~~~~~~~v~f---~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~----~P 119 (377)
.+|.+|..... .....++++ |+..-..-..+.+.+.++|+.+++ +++.|+.+|.++.....+.+|+.. .|
T Consensus 3 ~~~~en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~--gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P 79 (111)
T cd03073 3 HRTKDNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPD--RKLNFAVADKEDFSHELEEFGLDFSGGEKP 79 (111)
T ss_pred eeccchHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcC--CeEEEEEEcHHHHHHHHHHcCCCcccCCCC
Confidence 46677777764 323333332 223334456789999999999872 249999999998888899999984 99
Q ss_pred EEEEEeCCeeEee--cCCC-CHHHHHHHHHhh
Q 017126 120 TLKIFMHGIPTEY--YGPR-KAELLVRYLKKF 148 (377)
Q Consensus 120 ~~~~~~~g~~~~y--~g~~-~~~~i~~~~~~~ 148 (377)
++++...+. ..| .+.. +.+.|.+|++..
T Consensus 80 ~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 80 VVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred EEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 999987533 344 6677 999999999865
No 198
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.72 E-value=0.00022 Score=46.93 Aligned_cols=55 Identities=27% Similarity=0.381 Sum_probs=40.7
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhH----hhcCCCcCCEEEEEeCCee
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA----SKQEIDAFPTLKIFMHGIP 129 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~----~~~~i~~~P~~~~~~~g~~ 129 (377)
++.|+.+||++|++....+++ . ++.+-.+|.+.+++.. +..|..++|++++ +|+.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~--~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~ 59 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------K--GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKF 59 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------T--TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------c--CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEE
Confidence 478999999999988777722 1 2778888988775443 3349999999986 6553
No 199
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00039 Score=53.79 Aligned_cols=106 Identities=12% Similarity=0.169 Sum_probs=81.0
Q ss_pred CCcccccChhhHHh-hhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCC
Q 017126 252 LPLSVPINQDTLNL-LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLP 329 (377)
Q Consensus 252 ~p~~~~l~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P 329 (377)
...+...+.+.++. +.+...|+++-|.. .-..-.+.+..+|.+++.++.+ +.|..+|.+++.+++..|+| ...|
T Consensus 42 ~~~~~~~s~~~~~~~Vi~S~~PVlVdF~A-~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I---~avP 117 (150)
T KOG0910|consen 42 ATLFNVQSDSEFDDKVINSDVPVLVDFHA-EWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEI---SAVP 117 (150)
T ss_pred cccccccCHHHHHHHHHccCCCEEEEEec-CcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcce---eeee
Confidence 34556666666664 55667888888865 3344456778899999999988 99999999999999999999 8899
Q ss_pred eEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHhc
Q 017126 330 KMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 367 (377)
Q Consensus 330 ~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~ 367 (377)
+++++......--+ -|-.+++.+.+||+.++.
T Consensus 118 tvlvfknGe~~d~~------vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 118 TVLVFKNGEKVDRF------VGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEEECCEEeeee------cccCCHHHHHHHHHHHhc
Confidence 99999986433222 344567789999998763
No 200
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.71 E-value=0.00082 Score=50.51 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=66.3
Q ss_pred ChhhHHHHH--cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeC
Q 017126 49 DESNFDSAI--SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH 126 (377)
Q Consensus 49 ~~~~f~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 126 (377)
+.-..++++ +..+.++|.|-.+|.+.|.+....+.++++++++. ..++.||.++-|++.+.|.+..--++.+|-.
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~Vpdfn~~yel~dP~tvmFF~r 83 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEVPDFNQMYELYDPCTVMFFFR 83 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTTHCCHHHTTS-SSEEEEEEET
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccchhhhcccccCCCeEEEEEec
Confidence 345667776 67799999999999999999999999999999876 9999999999999999999995556777777
Q ss_pred CeeEe
Q 017126 127 GIPTE 131 (377)
Q Consensus 127 g~~~~ 131 (377)
++.+.
T Consensus 84 nkhm~ 88 (133)
T PF02966_consen 84 NKHMM 88 (133)
T ss_dssp TEEEE
T ss_pred CeEEE
Confidence 87664
No 201
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.70 E-value=0.00054 Score=49.95 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=64.3
Q ss_pred ChhhHHHHHcC--CCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchh----hHhhcCCC-cCCEE
Q 017126 49 DESNFDSAISS--FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEID-AFPTL 121 (377)
Q Consensus 49 ~~~~f~~~~~~--~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----~~~~~~i~-~~P~~ 121 (377)
+.+.+++++++ .++++|+=+++.|+-+.+....|++..+...+ .+.++.+|.-++++ +++++||. .-|.+
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~---~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD---EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc---cceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 56788888865 78999999999999999999999998887654 28899999988865 57889997 57999
Q ss_pred EEEeCCeeEe--ecCCCCHHHH
Q 017126 122 KIFMHGIPTE--YYGPRKAELL 141 (377)
Q Consensus 122 ~~~~~g~~~~--y~g~~~~~~i 141 (377)
+++++|+.+- =.+..+.+.|
T Consensus 83 ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 83 ILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEECCEEEEECccccCCHHhc
Confidence 9999998773 2344454443
No 202
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.65 E-value=0.00079 Score=54.95 Aligned_cols=107 Identities=19% Similarity=0.311 Sum_probs=73.7
Q ss_pred cccccCh-hhHHhhhcC---CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCC
Q 017126 254 LSVPINQ-DTLNLLKDD---KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLP 329 (377)
Q Consensus 254 ~~~~l~~-~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P 329 (377)
.+.+++. ..+...... +.++++.|+. ......+.+...|..+|.+|+++.|+.||++.. .++..|++ ...|
T Consensus 63 ~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya-~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v---~~vP 137 (175)
T cd02987 63 KVYELDSGEQFLDAIDKEGKDTTVVVHIYE-PGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDT---DALP 137 (175)
T ss_pred eEEEcCCHHHHHHHHHhcCCCcEEEEEEEC-CCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCC---CCCC
Confidence 3444544 454443222 2367766664 345556677789999999999999999999876 88899999 7899
Q ss_pred eEEEEeCCCCceeccCCC-CCCcccchhhHHHHHHHH
Q 017126 330 KMVVWDGNENYLTVIGSE-SIDEEDQGSQISRFLEGY 365 (377)
Q Consensus 330 ~l~i~~~~~~~~~~~~~~-~~~~~~t~e~i~~Fi~~~ 365 (377)
+++++.......-..+.. ....+++.+.|..|+..+
T Consensus 138 Tlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 138 ALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 999999754332223322 123478899999998763
No 203
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.65 E-value=0.00074 Score=50.55 Aligned_cols=98 Identities=9% Similarity=0.168 Sum_probs=70.4
Q ss_pred ccccChhhHHhhhc---CCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC--cEEEEEeccc-hhhHHh-hcCCCCCCC
Q 017126 255 SVPINQDTLNLLKD---DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQ-FADFAD-TFEANKKSK 327 (377)
Q Consensus 255 ~~~l~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~-~~~~~~-~~gi~~~~~ 327 (377)
+.+++.++++.+.. .++++++.|+. ......+.+...+.++++.+.+ +.++.+|++. ...++. .+++ ..
T Consensus 3 v~~~~~~~~~~~~~~~~~~k~vlv~f~a-~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v---~~ 78 (109)
T cd02993 3 VVTLSRAEIEALAKGERRNQSTLVVLYA-PWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL---KS 78 (109)
T ss_pred ceeccHHHHHHHHhhhhcCCCEEEEEEC-CCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC---Cc
Confidence 56788888887652 45677777764 4466667778889999988875 8899999986 466775 5888 78
Q ss_pred CCeEEEEeCCCC-ceeccCCCCCCc-ccchhhHHHHH
Q 017126 328 LPKMVVWDGNEN-YLTVIGSESIDE-EDQGSQISRFL 362 (377)
Q Consensus 328 ~P~l~i~~~~~~-~~~~~~~~~~~~-~~t~e~i~~Fi 362 (377)
+|++++++.++. -..+ .+ +.+.++|.+||
T Consensus 79 ~Pti~~f~~~~~~~~~y------~g~~~~~~~l~~f~ 109 (109)
T cd02993 79 FPTILFFPKNSRQPIKY------PSEQRDVDSLLMFV 109 (109)
T ss_pred CCEEEEEcCCCCCceec------cCCCCCHHHHHhhC
Confidence 999999987532 2222 33 35677888875
No 204
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.65 E-value=0.00037 Score=51.09 Aligned_cols=91 Identities=18% Similarity=0.118 Sum_probs=64.4
Q ss_pred CCEEEeChhhHHHHHcCCCeEEEEEECCC--ChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCE
Q 017126 43 GKVIELDESNFDSAISSFDYILVDFYAPW--CGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPT 120 (377)
Q Consensus 43 ~~v~~l~~~~f~~~~~~~~~~~v~f~~~~--C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~ 120 (377)
-....++..+++..+..+...+++|..+. |+.|....=.+-++.+.+.+ .+..+.+.-..++.+..+||+..+|+
T Consensus 9 ~g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~---~~~~avv~~~~e~~L~~r~gv~~~Pa 85 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPG---RFRGAVVARAAERALAARFGVRRWPA 85 (107)
T ss_dssp -TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT---SEEEEEEEHHHHHHHHHHHT-TSSSE
T ss_pred cCCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC---ccceEEECchhHHHHHHHhCCccCCe
Confidence 46778899999999988777666665432 34444444455555555544 47888888788899999999999999
Q ss_pred EEEEeCCeeEe-ecCCC
Q 017126 121 LKIFMHGIPTE-YYGPR 136 (377)
Q Consensus 121 ~~~~~~g~~~~-y~g~~ 136 (377)
++++++|+.+. ..|.+
T Consensus 86 Lvf~R~g~~lG~i~gi~ 102 (107)
T PF07449_consen 86 LVFFRDGRYLGAIEGIR 102 (107)
T ss_dssp EEEEETTEEEEEEESSS
T ss_pred EEEEECCEEEEEecCee
Confidence 99999999886 45544
No 205
>PRK15000 peroxidase; Provisional
Probab=97.64 E-value=0.00085 Score=56.13 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=63.2
Q ss_pred CCCeEEEEEEC-CCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc----------------------------chhh
Q 017126 59 SFDYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL 109 (377)
Q Consensus 59 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~~ 109 (377)
+++++++.||+ .||+.|....+.+.+.++++++.+ +.+..|+++. +..+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i 110 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI 110 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence 45899999998 499999999999999999997643 6666666542 1246
Q ss_pred HhhcCCC------cCCEEEEEe-CCeeEe-ecC----CCCHHHHHHHHHh
Q 017126 110 ASKQEID------AFPTLKIFM-HGIPTE-YYG----PRKAELLVRYLKK 147 (377)
Q Consensus 110 ~~~~~i~------~~P~~~~~~-~g~~~~-y~g----~~~~~~i~~~~~~ 147 (377)
++.||+. ..|+.+++. +|+... +.| .++.+++.+.++.
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 6677876 588888887 465443 333 4677777777753
No 206
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.64 E-value=0.00068 Score=48.51 Aligned_cols=90 Identities=14% Similarity=0.298 Sum_probs=64.5
Q ss_pred HhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCCCceec
Q 017126 264 NLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTV 343 (377)
Q Consensus 264 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~ 343 (377)
......+++.++.|+. ..........+.+++++...+++.|..+|....+++++.+++ ...|++++++..+....+
T Consensus 4 ~~~~~~~~~~ll~~~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v---~~~P~~~~~~~g~~~~~~ 79 (93)
T cd02947 4 EELIKSAKPVVVDFWA-PWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGV---RSIPTFLFFKNGKEVDRV 79 (93)
T ss_pred HHHHhcCCcEEEEEEC-CCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCc---ccccEEEEEECCEEEEEE
Confidence 3333334666666664 345566778888999888866699999999988999999999 779999999876433333
Q ss_pred cCCCCCCcccchhhHHHHHH
Q 017126 344 IGSESIDEEDQGSQISRFLE 363 (377)
Q Consensus 344 ~~~~~~~~~~t~e~i~~Fi~ 363 (377)
. +..+.+.|.+||+
T Consensus 80 ~------g~~~~~~l~~~i~ 93 (93)
T cd02947 80 V------GADPKEELEEFLE 93 (93)
T ss_pred e------cCCCHHHHHHHhC
Confidence 2 2234578888763
No 207
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.62 E-value=0.00075 Score=65.44 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=76.8
Q ss_pred CEEEeChhhHHHHHcCC-CeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEE
Q 017126 44 KVIELDESNFDSAISSF-DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (377)
Q Consensus 44 ~v~~l~~~~f~~~~~~~-~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~ 122 (377)
+-..|+++..+.+-+=. ..-+-.|+++.|++|......+.+++.. ++.+..-.+|...+++++.+|+|.++|+++
T Consensus 99 ~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~----~~~i~~~~id~~~~~~~~~~~~v~~VP~~~ 174 (517)
T PRK15317 99 HPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVL----NPNITHTMIDGALFQDEVEARNIMAVPTVF 174 (517)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh----CCCceEEEEEchhCHhHHHhcCCcccCEEE
Confidence 34455555555544323 4457789999999999988888888874 335999999999999999999999999997
Q ss_pred EEeCCeeEeecCCCCHHHHHHHHHhhcC
Q 017126 123 IFMHGIPTEYYGPRKAELLVRYLKKFVA 150 (377)
Q Consensus 123 ~~~~g~~~~y~g~~~~~~i~~~~~~~~~ 150 (377)
+ +|+ ..+.|..+.+++.+.+.+..+
T Consensus 175 i--~~~-~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 175 L--NGE-EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred E--CCc-EEEecCCCHHHHHHHHhcccc
Confidence 5 554 347898888988888876543
No 208
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.61 E-value=0.00063 Score=54.07 Aligned_cols=66 Identities=11% Similarity=0.215 Sum_probs=44.3
Q ss_pred CCCccccccCCCCCEEEeChhhHHHHHcCCCeEEEEEE-CCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 017126 31 LSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (377)
Q Consensus 31 ~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 104 (377)
...|.....+.++..+.+. ++ ...++++|.|| ++||+.|....|.+.++.+++.+. .+.+..|+.+
T Consensus 5 ~~~p~~~l~~~~g~~v~l~--~~----~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d 71 (149)
T cd03018 5 DKAPDFELPDQNGQEVRLS--EF----RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAA--GAEVLGISVD 71 (149)
T ss_pred CcCCCcEecCCCCCEEeHH--HH----cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC--CCEEEEecCC
Confidence 3444444444445544442 22 23377888887 899999999999999999998753 3666666654
No 209
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.58 E-value=0.002 Score=55.81 Aligned_cols=87 Identities=14% Similarity=0.146 Sum_probs=62.4
Q ss_pred CCCeEEEEEE-CCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc----------------------------chhh
Q 017126 59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----------------------------YSRL 109 (377)
Q Consensus 59 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----------------------------~~~~ 109 (377)
+++++++.|| +.||+.|....+.+.+..+++.+.+ +.+..|.++. +..+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i 174 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV 174 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence 3467888888 8999999999999999999997654 4455555432 2357
Q ss_pred HhhcCCC-----cCCEEEEEe-CCeeEe---e--cCCCCHHHHHHHHHh
Q 017126 110 ASKQEID-----AFPTLKIFM-HGIPTE---Y--YGPRKAELLVRYLKK 147 (377)
Q Consensus 110 ~~~~~i~-----~~P~~~~~~-~g~~~~---y--~g~~~~~~i~~~~~~ 147 (377)
++.||+. ..|+.+++. +|.... | ...++.+++.+-+..
T Consensus 175 akayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred HHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 8888985 479999997 565442 2 234677877777643
No 210
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00013 Score=59.96 Aligned_cols=79 Identities=16% Similarity=0.336 Sum_probs=68.1
Q ss_pred HHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCeeEe-ecC
Q 017126 56 AISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTE-YYG 134 (377)
Q Consensus 56 ~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~-y~g 134 (377)
..++.+..++.||++||..|+.+...+..+++... .+.+.+.+.+..+++|..+.+...|.++++..|+.+. ..|
T Consensus 13 ~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~ 88 (227)
T KOG0911|consen 13 LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSG 88 (227)
T ss_pred HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhc
Confidence 33577889999999999999999999999999883 3899999999999999999999999999999887665 455
Q ss_pred CCCH
Q 017126 135 PRKA 138 (377)
Q Consensus 135 ~~~~ 138 (377)
....
T Consensus 89 ~~~~ 92 (227)
T KOG0911|consen 89 ADPP 92 (227)
T ss_pred cCcH
Confidence 4433
No 211
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.55 E-value=0.0012 Score=48.20 Aligned_cols=88 Identities=15% Similarity=0.194 Sum_probs=63.8
Q ss_pred hhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCCCceecc
Q 017126 266 LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVI 344 (377)
Q Consensus 266 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~ 344 (377)
+...++++++.|+. ............++++++++.+ +.+..+|.+..+++.+.+++ ...|++++++.++.....
T Consensus 9 ~~~~~~~vlv~f~a-~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v---~~vPt~~i~~~g~~v~~~- 83 (97)
T cd02949 9 YHESDRLILVLYTS-PTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGI---MGTPTVQFFKDKELVKEI- 83 (97)
T ss_pred HHhCCCeEEEEEEC-CCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCC---eeccEEEEEECCeEEEEE-
Confidence 34455666666654 4566667778889999988876 89999999988999999999 789999999754322222
Q ss_pred CCCCCCcccchhhHHHHHH
Q 017126 345 GSESIDEEDQGSQISRFLE 363 (377)
Q Consensus 345 ~~~~~~~~~t~e~i~~Fi~ 363 (377)
.+..+.+++.+|++
T Consensus 84 -----~g~~~~~~~~~~l~ 97 (97)
T cd02949 84 -----SGVKMKSEYREFIE 97 (97)
T ss_pred -----eCCccHHHHHHhhC
Confidence 34445677777763
No 212
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.53 E-value=0.00074 Score=48.07 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=50.0
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc----hhhHhhcCC--CcCCEEEEEeCCeeEeecCCCC
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----SRLASKQEI--DAFPTLKIFMHGIPTEYYGPRK 137 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~~~~~~~i--~~~P~~~~~~~g~~~~y~g~~~ 137 (377)
++.|+.+||++|++....+.++..... .+.+-.+|.+.+ .++.+..+- .++|+++ -+|+.+ -.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~i-----gG 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHV-----GG 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEe-----cC
Confidence 577889999999999888888764332 266777777643 345556663 7899994 356443 22
Q ss_pred HHHHHHHHHhh
Q 017126 138 AELLVRYLKKF 148 (377)
Q Consensus 138 ~~~i~~~~~~~ 148 (377)
.++|.+++.++
T Consensus 71 ~~dl~~~~~~~ 81 (86)
T TIGR02183 71 CTDFEQLVKEN 81 (86)
T ss_pred HHHHHHHHHhc
Confidence 46666666554
No 213
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.53 E-value=0.00046 Score=57.78 Aligned_cols=84 Identities=19% Similarity=0.241 Sum_probs=55.0
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhh--------------------------------c--CCC----CeEEEE
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILA--------------------------------K--LKE----PIVIAK 100 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~--------------------------------~--~~~----~v~~~~ 100 (377)
+.+..++.|+.+.|++|+++.+.+.+....+. . .+. ......
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~ 155 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCD 155 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccC
Confidence 35789999999999999999988875110000 0 000 011111
Q ss_pred EeCCcchhhHhhcCCCcCCEEEEEeCCeeEeecCCCCHHHHHHHH
Q 017126 101 VDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145 (377)
Q Consensus 101 vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~i~~~~ 145 (377)
.+..++..+++++||.++|+++ +.+|.. ..|..+.+.|.+|+
T Consensus 156 ~~i~~~~~l~~~~gi~gtPtii-~~~G~~--~~G~~~~~~l~~~L 197 (197)
T cd03020 156 NPVAANLALGRQLGVNGTPTIV-LADGRV--VPGAPPAAQLEALL 197 (197)
T ss_pred chHHHHHHHHHHcCCCcccEEE-ECCCeE--ecCCCCHHHHHhhC
Confidence 2223345689999999999997 777866 46777777777663
No 214
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.53 E-value=0.0012 Score=48.89 Aligned_cols=93 Identities=11% Similarity=0.191 Sum_probs=66.8
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCC----CcEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeC
Q 017126 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR----ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (377)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~----~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~ 336 (377)
+.++.+. .++++++.|+. +.....+.....+.+++.+++ ++.+..+|+..++.+++.+++ ..+|++++++.
T Consensus 7 ~~~~~~~-~~~~vlv~f~a-~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I---~~~Pt~~l~~~ 81 (104)
T cd03000 7 DSFKDVR-KEDIWLVDFYA-PWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGV---RGYPTIKLLKG 81 (104)
T ss_pred hhhhhhc-cCCeEEEEEEC-CCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCC---ccccEEEEEcC
Confidence 4455543 34566666654 445556666778888888763 288889999988999999999 78999999975
Q ss_pred CCCceeccCCCCCCcccchhhHHHHHHHH
Q 017126 337 NENYLTVIGSESIDEEDQGSQISRFLEGY 365 (377)
Q Consensus 337 ~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~ 365 (377)
+..+ .+ .+..+.++|.+|++++
T Consensus 82 ~~~~-~~------~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 82 DLAY-NY------RGPRTKDDIVEFANRV 103 (104)
T ss_pred CCce-ee------cCCCCHHHHHHHHHhh
Confidence 4222 22 4556789999999876
No 215
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.52 E-value=0.00097 Score=52.32 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=37.1
Q ss_pred CCCeEEEEEE-CCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc
Q 017126 59 SFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105 (377)
Q Consensus 59 ~~~~~~v~f~-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~ 105 (377)
.+++++|.|| +.||+.|....|.+.++.++++.. .+.++.|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCC
Confidence 5689999999 789999999999999999998543 37777777643
No 216
>PTZ00051 thioredoxin; Provisional
Probab=97.51 E-value=0.0012 Score=48.17 Aligned_cols=76 Identities=11% Similarity=0.264 Sum_probs=61.0
Q ss_pred ChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCC
Q 017126 259 NQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE 338 (377)
Q Consensus 259 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~ 338 (377)
+.+.+..+...++++++.|+. +.....+.+...+.++++++.++.|+.+|.+....+++.|++ ...|++++++..+
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v---~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYA-EWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENI---TSMPTFKVFKNGS 82 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEEC-CCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCC---ceeeEEEEEeCCe
Confidence 455666666666777777765 456666777888999999988899999999998999999999 7899999997543
No 217
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.51 E-value=0.0012 Score=55.47 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=61.9
Q ss_pred CCCeEEE-EEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc---------------------------chhhH
Q 017126 59 SFDYILV-DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------------YSRLA 110 (377)
Q Consensus 59 ~~~~~~v-~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---------------------------~~~~~ 110 (377)
+++.+++ .|++.||+.|....+.+.+..+++++.+ +.+..|+++. +..++
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia 103 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA 103 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH
Confidence 3455554 5789999999999999999999987643 5555555442 23577
Q ss_pred hhcCCC------cCCEEEEEeC-CeeEe---e--cCCCCHHHHHHHHHhh
Q 017126 111 SKQEID------AFPTLKIFMH-GIPTE---Y--YGPRKAELLVRYLKKF 148 (377)
Q Consensus 111 ~~~~i~------~~P~~~~~~~-g~~~~---y--~g~~~~~~i~~~~~~~ 148 (377)
+.||+. .+|+.+++.+ |+... | .+.++.+++.+.++..
T Consensus 104 ~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 104 REYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred HHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 778874 4799999975 54331 2 3467888888887654
No 218
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.48 E-value=0.003 Score=52.37 Aligned_cols=109 Identities=12% Similarity=0.119 Sum_probs=77.8
Q ss_pred hCCCcccccChhhHHh-hhcCC--CcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCC
Q 017126 250 NFLPLSVPINQDTLNL-LKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKS 326 (377)
Q Consensus 250 ~~~p~~~~l~~~~~~~-~~~~~--~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~ 326 (377)
..+..+.+++...+.. +.... .++++.|+. ......+.+...|+.+|.+|+++.|+.+|++. ....|++ .
T Consensus 79 ~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya-~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~---~~~~~~i---~ 151 (192)
T cd02988 79 SKFGEVYEISKPDYVREVTEASKDTWVVVHLYK-DGIPLCRLLNQHLSELARKFPDTKFVKIISTQ---CIPNYPD---K 151 (192)
T ss_pred CCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEEC-CCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH---hHhhCCC---C
Confidence 3566677777777654 44332 466766664 34566677788999999999999999999964 3678888 7
Q ss_pred CCCeEEEEeCCCCceeccCCCCCC-cccchhhHHHHHHHH
Q 017126 327 KLPKMVVWDGNENYLTVIGSESID-EEDQGSQISRFLEGY 365 (377)
Q Consensus 327 ~~P~l~i~~~~~~~~~~~~~~~~~-~~~t~e~i~~Fi~~~ 365 (377)
.+|++++|.......-..|...+. ..+|.++|..++.++
T Consensus 152 ~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 152 NLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred CCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 899999999864443444444443 378899999988753
No 219
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=97.45 E-value=0.0026 Score=46.91 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=69.2
Q ss_pred cChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC--cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEe
Q 017126 258 INQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWD 335 (377)
Q Consensus 258 l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~ 335 (377)
.+.+.++.+...++++++.|+. .-....+.....+.+++.++++ +.|..+|.+ .++.++.|++ ...|++++++
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a-~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v---~~~Pt~~~~~ 79 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQ-EWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRG---KCEPTFLFYK 79 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEEC-CcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCC---CcCcEEEEEE
Confidence 3567777776677787777765 3455566777889999998874 789999998 5788999999 8889999998
Q ss_pred CCCCceeccCCCCCCcccchhhHHHHHHH
Q 017126 336 GNENYLTVIGSESIDEEDQGSQISRFLEG 364 (377)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~ 364 (377)
.........| .+.+.+.++|+.
T Consensus 80 ~g~~~~~~~G-------~~~~~~~~~i~~ 101 (102)
T cd02948 80 NGELVAVIRG-------ANAPLLNKTITE 101 (102)
T ss_pred CCEEEEEEec-------CChHHHHHHHhh
Confidence 5433333222 256788888764
No 220
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.43 E-value=0.0016 Score=49.04 Aligned_cols=91 Identities=9% Similarity=0.116 Sum_probs=64.4
Q ss_pred CCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCCCceeccCCCC
Q 017126 269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSES 348 (377)
Q Consensus 269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~~ 348 (377)
++.++++ ++........+...+.+++++..+.++.|..+|.+..+++++.+++ ...|++++++..+...-..
T Consensus 21 ~~~~vvv-~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v---~~vPt~~i~~~g~~~~~~~---- 92 (113)
T cd02975 21 NPVDLVV-FSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGV---ERVPTTIFLQDGGKDGGIR---- 92 (113)
T ss_pred CCeEEEE-EeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCC---CcCCEEEEEeCCeecceEE----
Confidence 3344444 4443444566777788888888886699999999999999999999 7889999998632211000
Q ss_pred CCcccchhhHHHHHHHHhc
Q 017126 349 IDEEDQGSQISRFLEGYRE 367 (377)
Q Consensus 349 ~~~~~t~e~i~~Fi~~~~~ 367 (377)
+.|-++..++.+||..+++
T Consensus 93 ~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 93 YYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EEecCchHHHHHHHHHHHh
Confidence 1344566799999998764
No 221
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.42 E-value=0.00054 Score=56.19 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=53.6
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc--------c---hhhHh-hcCCCcCCEEEEEeC
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--------Y---SRLAS-KQEIDAFPTLKIFMH 126 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--------~---~~~~~-~~~i~~~P~~~~~~~ 126 (377)
.+++++|.|+|+||+.|+ -.|.+.++.+++.+. .+.+..+.|.+ . ..+|+ ++++. +|.+-=.
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~--gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~k~-- 97 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQ--GFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFSKI-- 97 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhC--CeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEEEE--
Confidence 458999999999999996 488999999998753 39999999842 1 33555 56653 4433111
Q ss_pred CeeEeecCCCCHHHHHHHHHhhcC
Q 017126 127 GIPTEYYGPRKAELLVRYLKKFVA 150 (377)
Q Consensus 127 g~~~~y~g~~~~~~i~~~~~~~~~ 150 (377)
+-.|. .+..+..|+....+
T Consensus 98 ----dvnG~-~~~pl~~~Lk~~~~ 116 (183)
T PRK10606 98 ----EVNGE-GRHPLYQKLIAAAP 116 (183)
T ss_pred ----ccCCC-CCCHHHHHHHHhCC
Confidence 12222 34456777766544
No 222
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.002 Score=55.68 Aligned_cols=106 Identities=12% Similarity=0.164 Sum_probs=81.6
Q ss_pred CcccccChhhHHhh--hcC-CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCC
Q 017126 253 PLSVPINQDTLNLL--KDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKL 328 (377)
Q Consensus 253 p~~~~l~~~~~~~~--~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~ 328 (377)
|.+.++|..+|+.. ..+ ..|+++.|...- ......+...|.+++.+|++ +.++.||++..+.++..||+ ...
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~-~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgi---qsI 98 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPW-CGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGV---QSI 98 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCC-CchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCc---CcC
Confidence 34778888888652 233 458998888654 45567889999999999999 99999999999999999999 889
Q ss_pred CeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHhcC
Q 017126 329 PKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 368 (377)
Q Consensus 329 P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~G 368 (377)
|+++.+.-..-.--+ .|-..++.|++|++.++.-
T Consensus 99 PtV~af~dGqpVdgF------~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 99 PTVYAFKDGQPVDGF------QGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CeEEEeeCCcCcccc------CCCCcHHHHHHHHHHhcCh
Confidence 999988864322222 3444566999999988754
No 223
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.41 E-value=0.0021 Score=47.57 Aligned_cols=93 Identities=9% Similarity=0.064 Sum_probs=62.4
Q ss_pred hHHhhhcCCCcEEEEEEeCCChHHHHHHHHHH---HHHHHhCC-CcEEEEEeccc----hhhHHhhcCCCCCCCCCeEEE
Q 017126 262 TLNLLKDDKRKIVLAIVEDETEEKSQKLVTTL---KAAASANR-ELVFCYVGIKQ----FADFADTFEANKKSKLPKMVV 333 (377)
Q Consensus 262 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l---~~~a~~~~-~~~f~~vd~~~----~~~~~~~~gi~~~~~~P~l~i 333 (377)
.+......++++++.|+. ......+.+...+ .+++..+. ++.++.+|... ...+++.+++ ...|++++
T Consensus 3 ~~~~~~~~~k~vlv~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i---~~~Pti~~ 78 (104)
T cd02953 3 ALAQALAQGKPVFVDFTA-DWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGV---FGPPTYLF 78 (104)
T ss_pred HHHHHHHcCCeEEEEEEc-chhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCC---CCCCEEEE
Confidence 345555666788877764 3344445554444 45666666 58899999875 5778899999 78999999
Q ss_pred EeC-CCCceeccCCCCCCcccchhhHHHHHH
Q 017126 334 WDG-NENYLTVIGSESIDEEDQGSQISRFLE 363 (377)
Q Consensus 334 ~~~-~~~~~~~~~~~~~~~~~t~e~i~~Fi~ 363 (377)
++. +++-... +.|.++.+++.++|.
T Consensus 79 ~~~~~g~~~~~-----~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLR-----LPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCcc-----cccccCHHHHHHHhC
Confidence 997 4432211 256667788888763
No 224
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.36 E-value=0.0065 Score=59.45 Aligned_cols=145 Identities=17% Similarity=0.188 Sum_probs=109.0
Q ss_pred chhhhhhhcCCCCCCeEEEEcCCCC-CcccccCCCCHHHHHHHHHhh--CCCcccccChhhHHhhhcCCCcEEEEEEeCC
Q 017126 205 FSEDTMVLYDFDKVPALVALQPSYN-EHNIFYGPFDEEFLEEFIKQN--FLPLSVPINQDTLNLLKDDKRKIVLAIVEDE 281 (377)
Q Consensus 205 ~~~~~~~~~~v~~~P~l~~~~~~~~-~~~~~~g~~~~~~l~~fi~~~--~~p~~~~l~~~~~~~~~~~~~~~~i~~~~~~ 281 (377)
.+..+++.|+++..|++++.+.+++ ....|.|--.-.++.+||..- .-..-+.++++..+.+..-++|..+-+|-..
T Consensus 407 ~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~ 486 (555)
T TIGR03143 407 EEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHELNSFILALYNAAGPGQPLGEELLEKIKKITKPVNIKIGVSL 486 (555)
T ss_pred cchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHhHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEECC
Confidence 3567788999999999999864333 347788887777777777553 1122457788888888776788877776666
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCCCceeccCCCCCCcccchhhHHHH
Q 017126 282 TEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRF 361 (377)
Q Consensus 282 ~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~F 361 (377)
..+........+.+++...+++...++|+.++++.++.+++ ...|+++|-.. . .+ .+..+.++|.+|
T Consensus 487 ~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v---~~vP~~~i~~~---~-~~------~G~~~~~~~~~~ 553 (555)
T TIGR03143 487 SCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGI---MSVPAIVVDDQ---Q-VY------FGKKTIEEMLEL 553 (555)
T ss_pred CCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCc---eecCEEEECCE---E-EE------eeCCCHHHHHHh
Confidence 77888888889999999998999999999999999999999 88999998432 1 12 233356677766
Q ss_pred H
Q 017126 362 L 362 (377)
Q Consensus 362 i 362 (377)
|
T Consensus 554 ~ 554 (555)
T TIGR03143 554 I 554 (555)
T ss_pred h
Confidence 5
No 225
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.33 E-value=0.0032 Score=52.88 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=58.3
Q ss_pred eEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc---------------------------chhhHhhcC
Q 017126 62 YILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------------YSRLASKQE 114 (377)
Q Consensus 62 ~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---------------------------~~~~~~~~~ 114 (377)
.+++.|++.||+.|....+.+.++.+++++.+ +.+..|+++. +..+++.||
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 34556779999999999999999999997654 6667676653 235677888
Q ss_pred CC----c----CCEEEEEeC-CeeEe-ecC----CCCHHHHHHHHHhh
Q 017126 115 ID----A----FPTLKIFMH-GIPTE-YYG----PRKAELLVRYLKKF 148 (377)
Q Consensus 115 i~----~----~P~~~~~~~-g~~~~-y~g----~~~~~~i~~~~~~~ 148 (377)
+. + .|+.+++.+ |+... +.+ .++.+++.+.+..+
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 75 2 345777764 54432 222 45677777777543
No 226
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.33 E-value=0.0034 Score=45.70 Aligned_cols=75 Identities=13% Similarity=0.315 Sum_probs=56.3
Q ss_pred hhhHHhhhcCC--CcEEEEEEeCCChHHHHHHHHHHHHHHHh-CCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeC
Q 017126 260 QDTLNLLKDDK--RKIVLAIVEDETEEKSQKLVTTLKAAASA-NRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (377)
Q Consensus 260 ~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~l~~~a~~-~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~ 336 (377)
.+.+....... +++++.|+. ............|++++.+ +.++.|..+|.+..+++++.|++ ...|++++++.
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~-~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i---~~~Pt~~~~~~ 77 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWA-PWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI---TAVPTFVFFRN 77 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEEC-CCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC---ccccEEEEEEC
Confidence 34455544433 667766664 4556667778889999988 44599999999988999999999 77999999985
Q ss_pred CC
Q 017126 337 NE 338 (377)
Q Consensus 337 ~~ 338 (377)
..
T Consensus 78 g~ 79 (97)
T cd02984 78 GT 79 (97)
T ss_pred CE
Confidence 43
No 227
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.32 E-value=0.00096 Score=46.93 Aligned_cols=58 Identities=24% Similarity=0.380 Sum_probs=42.0
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc-h----hhHhhcCCCcCCEEEEEeCCeeE
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-S----RLASKQEIDAFPTLKIFMHGIPT 130 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~----~~~~~~~i~~~P~~~~~~~g~~~ 130 (377)
++.|+++||++|+.+.+.+.++.. .+.+..++...+ . .+.+..|+.++|++ |.+|..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 578999999999999988888654 255667776654 2 24455688899997 5566544
No 228
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.26 E-value=0.0055 Score=48.58 Aligned_cols=83 Identities=14% Similarity=0.284 Sum_probs=61.6
Q ss_pred cccccChhhHHhhhc-C-CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC--cEEEEEeccchhhHHhhcCCCCC----
Q 017126 254 LSVPINQDTLNLLKD-D-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKK---- 325 (377)
Q Consensus 254 ~~~~l~~~~~~~~~~-~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~---- 325 (377)
.+.+++++++..... . +.++++.|+. ......+.+...+.++++++.+ +.|+.+|.++++++++.+++ ..
T Consensus 29 ~v~~l~~~~f~~~l~~~~~~~vvV~Fya-~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V-~~~~~v 106 (152)
T cd02962 29 HIKYFTPKTLEEELERDKRVTWLVEFFT-TWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRV-STSPLS 106 (152)
T ss_pred ccEEcCHHHHHHHHHhcCCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCc-eecCCc
Confidence 355666777766442 2 3466666664 3566667888899999998864 99999999999999999999 22
Q ss_pred CCCCeEEEEeCCC
Q 017126 326 SKLPKMVVWDGNE 338 (377)
Q Consensus 326 ~~~P~l~i~~~~~ 338 (377)
.++|++++++..+
T Consensus 107 ~~~PT~ilf~~Gk 119 (152)
T cd02962 107 KQLPTIILFQGGK 119 (152)
T ss_pred CCCCEEEEEECCE
Confidence 3499999998643
No 229
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.24 E-value=0.0051 Score=52.02 Aligned_cols=87 Identities=15% Similarity=0.203 Sum_probs=61.7
Q ss_pred CCe-EEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc---------------------------chhhHh
Q 017126 60 FDY-ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------------YSRLAS 111 (377)
Q Consensus 60 ~~~-~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---------------------------~~~~~~ 111 (377)
++. +++.|.+.||+.|....+.+.+++.++.+.+ +.+..|+++. +..+++
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~ 105 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSN 105 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHH
Confidence 455 4567789999999999999999999997643 6666666643 234677
Q ss_pred hcCCC-------cCCEEEEEeC-CeeEe---e--cCCCCHHHHHHHHHhh
Q 017126 112 KQEID-------AFPTLKIFMH-GIPTE---Y--YGPRKAELLVRYLKKF 148 (377)
Q Consensus 112 ~~~i~-------~~P~~~~~~~-g~~~~---y--~g~~~~~~i~~~~~~~ 148 (377)
.||+. ..|+.+++.. |+... | ...++.+++.+.+...
T Consensus 106 ~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 106 QLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 78873 5799999975 65432 2 2246788888877643
No 230
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.23 E-value=0.0045 Score=60.03 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=74.8
Q ss_pred CEEEeChhhHHHHHc-CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEE
Q 017126 44 KVIELDESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLK 122 (377)
Q Consensus 44 ~v~~l~~~~f~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~ 122 (377)
+-..|+++..+.+-+ ....-+-.|+++.|++|......+.+++..- +.+..-.+|+...++++.+|++.++|+++
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~----p~i~~~~id~~~~~~~~~~~~v~~VP~~~ 175 (515)
T TIGR03140 100 HGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN----PNISHTMIDGALFQDEVEALGIQGVPAVF 175 (515)
T ss_pred CCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC----CCceEEEEEchhCHHHHHhcCCcccCEEE
Confidence 345566666555543 2345577899999999988888887777653 35888889999999999999999999997
Q ss_pred EEeCCeeEeecCCCCHHHHHHHHHhh
Q 017126 123 IFMHGIPTEYYGPRKAELLVRYLKKF 148 (377)
Q Consensus 123 ~~~~g~~~~y~g~~~~~~i~~~~~~~ 148 (377)
+ +|+ ..+.|..+.+.+.+.+.+.
T Consensus 176 i--~~~-~~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 176 L--NGE-EFHNGRMDLAELLEKLEET 198 (515)
T ss_pred E--CCc-EEEecCCCHHHHHHHHhhc
Confidence 6 454 3477888888888777655
No 231
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.17 E-value=0.0054 Score=43.63 Aligned_cols=96 Identities=13% Similarity=0.208 Sum_probs=68.4
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccc--hhhHHhhcCCCCCCCCCeEEEEeC-
Q 017126 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWDG- 336 (377)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~--~~~~~~~~gi~~~~~~P~l~i~~~- 336 (377)
-.+..+...+..++++|. .+.......+..++++|...++ =...|+||.+ ..++|+.+-+ ++...|.=..+..
T Consensus 10 KdfKKLLRTr~NVLvLy~--ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv-~~~~kp~~~~LkHY 86 (112)
T cd03067 10 KDFKKLLRTRNNVLVLYS--KSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKV-DPSSKPKPVELKHY 86 (112)
T ss_pred HHHHHHHhhcCcEEEEEe--cchhhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHcc-CCCCCCCcchhhcc
Confidence 446677777778888776 4566667788999999999998 7788999997 5889999998 4333444333322
Q ss_pred -CCCceeccCCCCCCcccchhhHHHHHHH
Q 017126 337 -NENYLTVIGSESIDEEDQGSQISRFLEG 364 (377)
Q Consensus 337 -~~~~~~~~~~~~~~~~~t~e~i~~Fi~~ 364 (377)
+|.|+.- .+..+|...+..|+.|
T Consensus 87 KdG~fHkd-----YdR~~t~kSmv~FlrD 110 (112)
T cd03067 87 KDGDFHTE-----YNRQLTFKSMVAFLRD 110 (112)
T ss_pred cCCCcccc-----ccchhhHHHHHHHhhC
Confidence 4666542 3455778888888875
No 232
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.16 E-value=0.004 Score=49.56 Aligned_cols=31 Identities=35% Similarity=0.644 Sum_probs=26.6
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHh
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPIL 89 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~ 89 (377)
+.++.++.|+.++|++|+.+.|.+.++....
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 3478899999999999999999999877654
No 233
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.11 E-value=0.011 Score=44.21 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=53.8
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCC
Q 017126 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE 338 (377)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~ 338 (377)
++++++-|+. .-....+.+...|.+++.++++ +.|+.+|.++.++++..+|+ ...|++++++...
T Consensus 14 ~~~vVV~F~A-~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V---~~iPTf~~fk~G~ 79 (114)
T cd02954 14 EKVVVIRFGR-DWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYEL---YDPPTVMFFFRNK 79 (114)
T ss_pred CCEEEEEEEC-CCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCC---CCCCEEEEEECCE
Confidence 4566666654 4456667788899999999998 78999999999999999999 7899999999753
No 234
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.10 E-value=0.011 Score=47.57 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=60.1
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc--ch-----------------------------
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK--YS----------------------------- 107 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~--~~----------------------------- 107 (377)
..++.++.|....|++|.++.+.+.++.+.+-+ .+++.+..++.-. ..
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~-~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYID-PGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC-CCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 447889999999999999999999988887621 2247777776521 10
Q ss_pred -------------------------------------hhHhhcCCCcCCEEEEEeCCeeEeecCCCCHHHHHHHHHh
Q 017126 108 -------------------------------------RLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKK 147 (377)
Q Consensus 108 -------------------------------------~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~i~~~~~~ 147 (377)
..+++++|.++|++++ +|+. +.|..+.+.+.+.|++
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~--~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY--VVGPYTIEELKELIDK 162 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE--EETTTSHHHHHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE--eCCCCCHHHHHHHHcC
Confidence 1455568899999988 7766 3678888888887764
No 235
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.10 E-value=0.0094 Score=44.08 Aligned_cols=89 Identities=17% Similarity=0.239 Sum_probs=66.4
Q ss_pred ChhhHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeC--
Q 017126 49 DESNFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH-- 126 (377)
Q Consensus 49 ~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~-- 126 (377)
+.++++.++...+.++|-|+..--. .....|.++|+.++. ++.|+... +..+.+++++ .|++++|++
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~ 75 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRE---SFRFAHTS---DKQLLEKYGY--GEGVVLFRPPR 75 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh---cCEEEEEC---hHHHHHhcCC--CCceEEEechh
Confidence 4566788887778888888766443 467788999998854 37887665 4577888888 788999953
Q ss_pred ------CeeEeecCCCCHHHHHHHHHhh
Q 017126 127 ------GIPTEYYGPRKAELLVRYLKKF 148 (377)
Q Consensus 127 ------g~~~~y~g~~~~~~i~~~~~~~ 148 (377)
.....|.|..+.+.|.+|+...
T Consensus 76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 76 LSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhcccCcccccccCcCCHHHHHHHHHhh
Confidence 2334599998899999999754
No 236
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.08 E-value=0.0029 Score=42.88 Aligned_cols=56 Identities=21% Similarity=0.294 Sum_probs=40.0
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhh----HhhcCCCcCCEEEEEeCCeeE
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL----ASKQEIDAFPTLKIFMHGIPT 130 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~----~~~~~i~~~P~~~~~~~g~~~ 130 (377)
++.|+++||++|+.+...+.+.. +.+..+|...+++. .+..+...+|+++ .+|+.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~i 61 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEFI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 56788999999999988777553 55667888776644 3345677888774 466554
No 237
>PRK13189 peroxiredoxin; Provisional
Probab=97.06 E-value=0.011 Score=50.29 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=59.6
Q ss_pred CCCeEE-EEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc---------------------------chhhH
Q 017126 59 SFDYIL-VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---------------------------YSRLA 110 (377)
Q Consensus 59 ~~~~~~-v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---------------------------~~~~~ 110 (377)
.+++++ +.|.+.||+.|....+.+.+.+.++++.+ +.+..|.++. +..++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia 111 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA 111 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH
Confidence 345444 45669999999999999999999997644 5555555542 23467
Q ss_pred hhcCCC-------cCCEEEEEe-CCeeEe---e--cCCCCHHHHHHHHHhh
Q 017126 111 SKQEID-------AFPTLKIFM-HGIPTE---Y--YGPRKAELLVRYLKKF 148 (377)
Q Consensus 111 ~~~~i~-------~~P~~~~~~-~g~~~~---y--~g~~~~~~i~~~~~~~ 148 (377)
+.||+. ..|+.+++. +|.... | ...++.+++.+.++.+
T Consensus 112 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 112 KKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 778865 468888887 465432 2 2456778887777544
No 238
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.05 E-value=0.0046 Score=43.36 Aligned_cols=77 Identities=26% Similarity=0.297 Sum_probs=58.2
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCC---eeEeecCCCCHHH
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHG---IPTEYYGPRKAEL 140 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g---~~~~y~g~~~~~~ 140 (377)
+++|+.+.|+-|..+...+..+.... .+.+-.||.++++++-.+|+. .+|.+.+=..+ ....-.+..+.+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~ 75 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQ 75 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHH
Confidence 68899999999999988888765432 389999999999999999996 79996664421 1233567788888
Q ss_pred HHHHHH
Q 017126 141 LVRYLK 146 (377)
Q Consensus 141 i~~~~~ 146 (377)
+.+|++
T Consensus 76 L~~~L~ 81 (81)
T PF05768_consen 76 LRAWLE 81 (81)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 888874
No 239
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.02 E-value=0.012 Score=49.84 Aligned_cols=88 Identities=11% Similarity=0.144 Sum_probs=60.6
Q ss_pred CCCeEEE-EEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc---------------------------hhhH
Q 017126 59 SFDYILV-DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY---------------------------SRLA 110 (377)
Q Consensus 59 ~~~~~~v-~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---------------------------~~~~ 110 (377)
+++++++ .|.++||+.|....+.+.+.+.++++.+ +.+..|+++.. ..++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia 109 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA 109 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH
Confidence 3455554 6679999999999999999999997654 56666665422 2466
Q ss_pred hhcCCC-------cCCEEEEEeC-CeeEe---e--cCCCCHHHHHHHHHhh
Q 017126 111 SKQEID-------AFPTLKIFMH-GIPTE---Y--YGPRKAELLVRYLKKF 148 (377)
Q Consensus 111 ~~~~i~-------~~P~~~~~~~-g~~~~---y--~g~~~~~~i~~~~~~~ 148 (377)
+.||+. ..|+.+++.+ |.... | .-.++.+++++.++..
T Consensus 110 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 110 KRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 677763 3688888864 54332 2 2246888888887654
No 240
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.00 E-value=0.0018 Score=44.37 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=44.4
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhc---CCCcCCEEEEEeCCeeEeecCCCCHHHH
Q 017126 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ---EIDAFPTLKIFMHGIPTEYYGPRKAELL 141 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~---~i~~~P~~~~~~~g~~~~y~g~~~~~~i 141 (377)
..|+.++|++|++....+.+. .+.+-.+|.++++.....+ |..++|.+++ +|. ..-|..+.+.|
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~~ 68 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH---------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDKL 68 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC---------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHHH
Confidence 567889999999988777641 2778888998887665544 8889999855 332 13344555544
Q ss_pred H
Q 017126 142 V 142 (377)
Q Consensus 142 ~ 142 (377)
.
T Consensus 69 ~ 69 (72)
T TIGR02194 69 K 69 (72)
T ss_pred H
Confidence 4
No 241
>PHA02278 thioredoxin-like protein
Probab=97.00 E-value=0.013 Score=43.09 Aligned_cols=91 Identities=10% Similarity=0.150 Sum_probs=63.5
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccch----hhHHhhcCCCCCCCCCeEEEEe
Q 017126 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQF----ADFADTFEANKKSKLPKMVVWD 335 (377)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~----~~~~~~~gi~~~~~~P~l~i~~ 335 (377)
..+......+.++++.|+. .-....+.....+++++.++.. ..|..+|.+.. +++++.+++ .+.|++++++
T Consensus 5 ~~~~~~i~~~~~vvV~F~A-~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I---~~iPT~i~fk 80 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQ-DNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI---MSTPVLIGYK 80 (103)
T ss_pred HHHHHHHhCCCcEEEEEEC-CCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC---ccccEEEEEE
Confidence 4455555566788887775 3455556777888888887443 67888888864 679999999 8899999999
Q ss_pred CCCCceeccCCCCCCcccchhhHHHH
Q 017126 336 GNENYLTVIGSESIDEEDQGSQISRF 361 (377)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~t~e~i~~F 361 (377)
........ .|..+.+.|.++
T Consensus 81 ~G~~v~~~------~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DGQLVKKY------EDQVTPMQLQEL 100 (103)
T ss_pred CCEEEEEE------eCCCCHHHHHhh
Confidence 75433333 344456677664
No 242
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.99 E-value=0.012 Score=55.46 Aligned_cols=105 Identities=10% Similarity=0.097 Sum_probs=76.7
Q ss_pred CCcccccChhhHHhhhc---CCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC--cEEEEEeccchh-hHH-hhcCCCC
Q 017126 252 LPLSVPINQDTLNLLKD---DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFA-DFA-DTFEANK 324 (377)
Q Consensus 252 ~p~~~~l~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~-~~~-~~~gi~~ 324 (377)
-+.+.+++.++++.... .++++++.|+. .-....+.+...+.++|+++.+ +.|+.+|++... ..+ +.++|
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyA-pWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I-- 426 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYA-PWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQL-- 426 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEEC-CCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCC--
Confidence 44788899999988653 56677777765 3456667778899999999875 889999988643 454 68999
Q ss_pred CCCCCeEEEEeCCC-CceeccCCCCCCcccchhhHHHHHHHH
Q 017126 325 KSKLPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGY 365 (377)
Q Consensus 325 ~~~~P~l~i~~~~~-~~~~~~~~~~~~~~~t~e~i~~Fi~~~ 365 (377)
..+|+++++..++ .-..+. .+.-+.++|..|++.+
T Consensus 427 -~~~PTii~Fk~g~~~~~~Y~-----~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 -GSFPTILFFPKHSSRPIKYP-----SEKRDVDSLMSFVNLL 462 (463)
T ss_pred -CccceEEEEECCCCCceeCC-----CCCCCHHHHHHHHHhh
Confidence 7899999998753 222222 2345678999999764
No 243
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.99 E-value=0.0031 Score=46.14 Aligned_cols=56 Identities=23% Similarity=0.249 Sum_probs=37.3
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchh-------hHhhcCCCcCCEEEEEeCCeeE
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR-------LASKQEIDAFPTLKIFMHGIPT 130 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~-------~~~~~~i~~~P~~~~~~~g~~~ 130 (377)
++.|..+||++|++....+.+.. +.+..+|.+++++ +.+..|...+|.+ |-+|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~---------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG---------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE
Confidence 67788999999998877665432 4445666665533 2233467899997 5666555
No 244
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.98 E-value=0.0022 Score=44.75 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=42.3
Q ss_pred CeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc---hhhHhhcCCCcCCEEEEEeCCeeE
Q 017126 61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY---SRLASKQEIDAFPTLKIFMHGIPT 130 (377)
Q Consensus 61 ~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~---~~~~~~~~i~~~P~~~~~~~g~~~ 130 (377)
+.-++.|+.+||++|++....+.+. .+.+-.+|++++ ..+.+..|...+|.+++ +|+.+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~---------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~i 68 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK---------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKLI 68 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc---------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEEE
Confidence 3447789999999999988877532 166667888765 34555568899999954 66543
No 245
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.92 E-value=0.011 Score=51.35 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=56.6
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEe----------------CC-------------------
Q 017126 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD----------------AD------------------- 104 (377)
Q Consensus 60 ~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd----------------~~------------------- 104 (377)
.+.+++.|+.+.|++|++++++...+.+.- ++.+..+. |.
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g-----~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDSG-----KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhcC-----ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 356788999999999999998876644321 12111111 11
Q ss_pred ---------------cchhhHhhcCCCcCCEEEEEeC-CeeEeecCCCCHHHHHHHHH
Q 017126 105 ---------------KYSRLASKQEIDAFPTLKIFMH-GIPTEYYGPRKAELLVRYLK 146 (377)
Q Consensus 105 ---------------~~~~~~~~~~i~~~P~~~~~~~-g~~~~y~g~~~~~~i~~~~~ 146 (377)
++..+.+++||+++|++++-.+ |......|...++.|.+.+.
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 1234677799999999999874 66556788888888887764
No 246
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.92 E-value=0.0081 Score=41.01 Aligned_cols=66 Identities=24% Similarity=0.396 Sum_probs=44.2
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchh---hHhhcCCCcCCEEEEEeCCeeEeecCCCCHHH
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR---LASKQEIDAFPTLKIFMHGIPTEYYGPRKAEL 140 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~---~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~ 140 (377)
++.|..+||+.|.+....+.+. .+.+-.+|.+++.. +-+..|...+|.+ |-+|+.+ | ..++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~---------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i---g--g~~~ 66 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN---------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI---G--GSDD 66 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE---e--CHHH
Confidence 6788999999999987766631 26667777766543 2333588899998 5566544 2 2555
Q ss_pred HHHHH
Q 017126 141 LVRYL 145 (377)
Q Consensus 141 i~~~~ 145 (377)
|.+|+
T Consensus 67 l~~~l 71 (72)
T cd03029 67 LEKYF 71 (72)
T ss_pred HHHHh
Confidence 65554
No 247
>PLN02309 5'-adenylylsulfate reductase
Probab=96.89 E-value=0.016 Score=54.52 Aligned_cols=105 Identities=10% Similarity=0.153 Sum_probs=77.2
Q ss_pred CCcccccChhhHHhhh---cCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC--cEEEEEecc-chhhHHh-hcCCCC
Q 017126 252 LPLSVPINQDTLNLLK---DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIK-QFADFAD-TFEANK 324 (377)
Q Consensus 252 ~p~~~~l~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~-~~~~~~~-~~gi~~ 324 (377)
-+.+.+++.++++.+. ..++++++.|+. .-....+.+...+.+++.++.+ +.|+.+|++ .+..++. .|+|
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyA-pWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I-- 420 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYA-PWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL-- 420 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEEC-CCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC--
Confidence 3467889999998765 355677777764 3456667778889999999865 999999998 6677886 6999
Q ss_pred CCCCCeEEEEeCCC-CceeccCCCCCCcccchhhHHHHHHHH
Q 017126 325 KSKLPKMVVWDGNE-NYLTVIGSESIDEEDQGSQISRFLEGY 365 (377)
Q Consensus 325 ~~~~P~l~i~~~~~-~~~~~~~~~~~~~~~t~e~i~~Fi~~~ 365 (377)
..+|+++++..+. ....+. .+.-+.++|..|++.+
T Consensus 421 -~~~PTil~f~~g~~~~v~Y~-----~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 421 -GSFPTILLFPKNSSRPIKYP-----SEKRDVDSLLSFVNSL 456 (457)
T ss_pred -ceeeEEEEEeCCCCCeeecC-----CCCcCHHHHHHHHHHh
Confidence 7899999998653 222222 1235677999999864
No 248
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.87 E-value=0.012 Score=47.50 Aligned_cols=108 Identities=19% Similarity=0.273 Sum_probs=76.3
Q ss_pred CCCEEEeChhhHHHHH---cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcC
Q 017126 42 DGKVIELDESNFDSAI---SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF 118 (377)
Q Consensus 42 ~~~v~~l~~~~f~~~~---~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~ 118 (377)
-+.|..++..+|.+.+ .++-.++|..|...-+.|.-+...+..+|.++.+ ++|+++-.... ...|-=...
T Consensus 90 fG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~at~c---IpNYPe~nl 162 (240)
T KOG3170|consen 90 FGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPATTC---IPNYPESNL 162 (240)
T ss_pred ccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEecccccc---cCCCcccCC
Confidence 3689999999999877 4556788889999999999999999999998875 77877764432 234556678
Q ss_pred CEEEEEeCCeeE-------eecCCC-CHHHHHHHHHhhcCCCceecC
Q 017126 119 PTLKIFMHGIPT-------EYYGPR-KAELLVRYLKKFVAPDVSILN 157 (377)
Q Consensus 119 P~~~~~~~g~~~-------~y~g~~-~~~~i~~~~~~~~~~~~~~i~ 157 (377)
||+++|..|... .+.|.. +.+++..++ -..++.+....
T Consensus 163 PTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L-~qaga~l~d~~ 208 (240)
T KOG3170|consen 163 PTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFL-VQAGAALTDGD 208 (240)
T ss_pred CeEEEeecchHHhheehhhhhcCCcCCHHHHHHHH-Hhccccccccc
Confidence 999999988432 234444 344444444 34444444443
No 249
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.85 E-value=0.024 Score=41.81 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=50.9
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchh---hHHhhcCCCCCCCCCeEEEEeCCC
Q 017126 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFA---DFADTFEANKKSKLPKMVVWDGNE 338 (377)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~---~~~~~~gi~~~~~~P~l~i~~~~~ 338 (377)
++++++.|+.+ -....+.....|.++++++.++.|+.+|+++.. ++++.+++ ...|++++++...
T Consensus 15 ~k~vvv~F~a~-wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V---~~~Pt~~~~~~G~ 82 (103)
T cd02985 15 GRLVVLEFALK-HSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI---IEVPHFLFYKDGE 82 (103)
T ss_pred CCEEEEEEECC-CCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC---CcCCEEEEEeCCe
Confidence 56777777653 455556778899999999977999999988653 78999999 7899999996443
No 250
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.81 E-value=0.0054 Score=42.22 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=39.4
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHh----hcCCC-cCCEEEEEeCCeeE
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS----KQEID-AFPTLKIFMHGIPT 130 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~----~~~i~-~~P~~~~~~~g~~~ 130 (377)
++.|+.++|++|++....+.+. .+.+-.+|++.+++..+ ..+.. ++|++ |-+|+.+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~i 62 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHI 62 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEE
Confidence 5678899999999988777652 26677788877655443 35666 89977 4556544
No 251
>PHA03050 glutaredoxin; Provisional
Probab=96.81 E-value=0.0053 Score=45.63 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=43.1
Q ss_pred HHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc---ch----hhHhhcCCCcCCEEEEEe
Q 017126 53 FDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK---YS----RLASKQEIDAFPTLKIFM 125 (377)
Q Consensus 53 f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~---~~----~~~~~~~i~~~P~~~~~~ 125 (377)
.++.+++++ ++.|..+||++|++....+++..... -.+-.+|.++ .. .+-+.-|.+.+|++ |-
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~------~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI 75 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKR------GAYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FF 75 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCc------CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EE
Confidence 344555544 67889999999999888776654211 1244555554 22 34455678899999 44
Q ss_pred CCeeE
Q 017126 126 HGIPT 130 (377)
Q Consensus 126 ~g~~~ 130 (377)
+|+.+
T Consensus 76 ~g~~i 80 (108)
T PHA03050 76 GKTSI 80 (108)
T ss_pred CCEEE
Confidence 56554
No 252
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.79 E-value=0.0026 Score=44.40 Aligned_cols=56 Identities=16% Similarity=0.432 Sum_probs=39.0
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHh----hcCCCcCCEEEEEeCCeeE
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS----KQEIDAFPTLKIFMHGIPT 130 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~----~~~i~~~P~~~~~~~g~~~ 130 (377)
++.|+.+||++|+.....+.+.. +.+-.+|++.+++..+ ..|..++|++ |-+|+.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~---------i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~i 60 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG---------VTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHV 60 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC---------CCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 35688999999999988876421 5566677777655443 3477889998 4456543
No 253
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.76 E-value=0.037 Score=40.74 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=68.3
Q ss_pred EEe-ChhhHHHHHc-CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEE
Q 017126 46 IEL-DESNFDSAIS-SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (377)
Q Consensus 46 ~~l-~~~~f~~~~~-~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~ 123 (377)
..+ +.+.++.+++ ....++|-|+..--+ .....|.++|+.++. ++.|+... +.++.+++++. .|.+++
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~~---~~~~~~~~~~~-~~~i~l 72 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP---YIKFFATF---DSKVAKKLGLK-MNEVDF 72 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc---CCEEEEEC---cHHHHHHcCCC-CCcEEE
Confidence 445 5566889998 788888888766444 456779999998854 37786665 55677788765 799999
Q ss_pred EeC-Ce-eEee-cCCCCHHHHHHHHHhh
Q 017126 124 FMH-GI-PTEY-YGPRKAELLVRYLKKF 148 (377)
Q Consensus 124 ~~~-g~-~~~y-~g~~~~~~i~~~~~~~ 148 (377)
+++ .. ...| .|..+.+.|.+|+...
T Consensus 73 ~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 73 YEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred eCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 976 33 3458 7888999999998653
No 254
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.75 E-value=0.0067 Score=41.57 Aligned_cols=56 Identities=14% Similarity=0.314 Sum_probs=40.3
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchh----hHhhcCCCcCCEEEEEeCCeeE
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR----LASKQEIDAFPTLKIFMHGIPT 130 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~----~~~~~~i~~~P~~~~~~~g~~~ 130 (377)
++.|+.+||+.|++....+++. .+.+-.+|+.++++ +.+..+-..+|++ |-+|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~---------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK---------GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC---------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEE
Confidence 5788899999999987777651 26677788887664 4455577888998 4455444
No 255
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.73 E-value=0.0077 Score=42.21 Aligned_cols=70 Identities=10% Similarity=0.238 Sum_probs=48.1
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhH---hhcCCCcCCEEEEEeCCeeEeecCCCCHHH
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA---SKQEIDAFPTLKIFMHGIPTEYYGPRKAEL 140 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~---~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~ 140 (377)
++.|+.+||++|++....+.+ . .+.+-.+|.+++++.. +..|...+|++++ ++.. -+....+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~--gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~~---~~Gf~~~~ 68 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------R--GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDLS---WSGFRPDM 68 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------C--CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCEE---EecCCHHH
Confidence 567889999999998777743 1 2778889998877643 3457788999965 4432 23455666
Q ss_pred HHHHHHh
Q 017126 141 LVRYLKK 147 (377)
Q Consensus 141 i~~~~~~ 147 (377)
|.+.+..
T Consensus 69 l~~~~~~ 75 (81)
T PRK10329 69 INRLHPA 75 (81)
T ss_pred HHHHHHh
Confidence 6666543
No 256
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.72 E-value=0.038 Score=41.58 Aligned_cols=80 Identities=10% Similarity=0.104 Sum_probs=58.9
Q ss_pred ccccChhhHHhhh-cCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCC---C-cEEEEEecc--chhhHHhhcCCCCCCC
Q 017126 255 SVPINQDTLNLLK-DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR---E-LVFCYVGIK--QFADFADTFEANKKSK 327 (377)
Q Consensus 255 ~~~l~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~---~-~~f~~vd~~--~~~~~~~~~gi~~~~~ 327 (377)
+.+++..++.... ..++++++.|+. ........+...+++++..++ + +.|+.+|+. ..+.+++.+++ ..
T Consensus 3 v~~l~~~~f~~~i~~~~~~vvV~f~a-~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i---~~ 78 (114)
T cd02992 3 VIVLDAASFNSALLGSPSAWLVEFYA-SWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGV---TG 78 (114)
T ss_pred eEECCHHhHHHHHhcCCCeEEEEEEC-CCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCC---CC
Confidence 5677888887754 444567776664 345556677778888888764 3 888999975 35679999999 78
Q ss_pred CCeEEEEeCCC
Q 017126 328 LPKMVVWDGNE 338 (377)
Q Consensus 328 ~P~l~i~~~~~ 338 (377)
+|++.+++.+.
T Consensus 79 ~Pt~~lf~~~~ 89 (114)
T cd02992 79 YPTLRYFPPFS 89 (114)
T ss_pred CCEEEEECCCC
Confidence 99999998753
No 257
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.72 E-value=0.022 Score=43.69 Aligned_cols=98 Identities=16% Similarity=0.192 Sum_probs=64.3
Q ss_pred HHhhhcCC-CcEEEEEEeCCChHHHHHHHHHHH---HHHHhCCC-cEEEEEeccch-------------hhHHhhcCCCC
Q 017126 263 LNLLKDDK-RKIVLAIVEDETEEKSQKLVTTLK---AAASANRE-LVFCYVGIKQF-------------ADFADTFEANK 324 (377)
Q Consensus 263 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~l~---~~a~~~~~-~~f~~vd~~~~-------------~~~~~~~gi~~ 324 (377)
+......+ +++++.|.. ......+.....+. .+...+.+ +.+..+|.... .+++..+++
T Consensus 6 ~~~a~~~~~k~vlv~f~a-~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v-- 82 (125)
T cd02951 6 LAEAAADGKKPLLLLFSQ-PGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV-- 82 (125)
T ss_pred HHHHHHcCCCcEEEEEeC-CCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC--
Confidence 34445556 778877764 34454555554442 34444433 77777876642 578889999
Q ss_pred CCCCCeEEEEeCC-CCceeccCCCCCCcccchhhHHHHHHHHhcCc
Q 017126 325 KSKLPKMVVWDGN-ENYLTVIGSESIDEEDQGSQISRFLEGYREGR 369 (377)
Q Consensus 325 ~~~~P~l~i~~~~-~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~Gk 369 (377)
...|++++++.+ ++.... +.|..+.+.+.++|+.++++.
T Consensus 83 -~~~Pt~~~~~~~gg~~~~~-----~~G~~~~~~~~~~l~~~~~~~ 122 (125)
T cd02951 83 -RFTPTVIFLDPEGGKEIAR-----LPGYLPPDEFLAYLEYVQEKA 122 (125)
T ss_pred -ccccEEEEEcCCCCceeEE-----ecCCCCHHHHHHHHHHHHhhh
Confidence 779999999997 443322 245566789999999988764
No 258
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=96.71 E-value=0.025 Score=43.11 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=68.8
Q ss_pred ccccChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccch-----------hhHHhhcCCC
Q 017126 255 SVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQF-----------ADFADTFEAN 323 (377)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~-----------~~~~~~~gi~ 323 (377)
+.+++.+.+.....++...++.|. ....+..+.+...|++++++. +..+.++|.+.. .++.+.+++.
T Consensus 8 ~~~it~~~~~~~i~~~~~~iv~f~-~~~Cp~C~~~~P~l~~~~~~~-~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 8 LEVTTVVRALEALDKKETATFFIG-RKTCPYCRKFSGTLSGVVAQT-KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred ceecCHHHHHHHHHcCCcEEEEEE-CCCChhHHHHhHHHHHHHHhc-CCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 455666777766666666565554 466788889999999999983 366777777632 3566777652
Q ss_pred -CCCCCCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHH
Q 017126 324 -KKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 363 (377)
Q Consensus 324 -~~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~ 363 (377)
.-...|++++++..+.-....| +..|.++|.+|+.
T Consensus 86 ~~i~~~PT~v~~k~Gk~v~~~~G-----~~~~~~~l~~~~~ 121 (122)
T TIGR01295 86 TSFMGTPTFVHITDGKQVSVRCG-----SSTTAQELQDIAA 121 (122)
T ss_pred ccCCCCCEEEEEeCCeEEEEEeC-----CCCCHHHHHHHhh
Confidence 1256899999997644444432 2456889999875
No 259
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.71 E-value=0.018 Score=40.22 Aligned_cols=75 Identities=9% Similarity=0.137 Sum_probs=56.0
Q ss_pred EeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCCCceeccCCCCCCcccchh
Q 017126 278 VEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGS 356 (377)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e 356 (377)
|........+.....+.+++.++.. +.+..+|..+.++.++.+|+ ...|++++ +. +. .. .|..+.+
T Consensus 6 f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v---~~vPt~~~-~g--~~-~~------~G~~~~~ 72 (82)
T TIGR00411 6 FTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGI---MAVPAIVI-NG--DV-EF------IGAPTKE 72 (82)
T ss_pred EECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCC---ccCCEEEE-CC--EE-EE------ecCCCHH
Confidence 3345566667788899999888876 88999999988999999999 77899986 33 32 22 3445677
Q ss_pred hHHHHHHHH
Q 017126 357 QISRFLEGY 365 (377)
Q Consensus 357 ~i~~Fi~~~ 365 (377)
.+.++++..
T Consensus 73 ~l~~~l~~~ 81 (82)
T TIGR00411 73 ELVEAIKKR 81 (82)
T ss_pred HHHHHHHhh
Confidence 888888764
No 260
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.63 E-value=0.02 Score=47.92 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=58.3
Q ss_pred CCCeEEEEEEC-CCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc----------------------------hhh
Q 017126 59 SFDYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----------------------------SRL 109 (377)
Q Consensus 59 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----------------------------~~~ 109 (377)
.+++++|.||+ .||+.|....+.+.++++++.+.+ +.+..|+++.. .++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~i 112 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSI 112 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHH
Confidence 45788999994 789999999999999999998643 66666666422 246
Q ss_pred HhhcCCC------cCCEEEEEeC-CeeEe-e----cCCCCHHHHHHHHH
Q 017126 110 ASKQEID------AFPTLKIFMH-GIPTE-Y----YGPRKAELLVRYLK 146 (377)
Q Consensus 110 ~~~~~i~------~~P~~~~~~~-g~~~~-y----~g~~~~~~i~~~~~ 146 (377)
++.||+. .+|+.+++.+ |.... + .-.++.+++++.+.
T Consensus 113 a~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~ 161 (199)
T PTZ00253 113 ARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLE 161 (199)
T ss_pred HHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 7778875 3678888875 54332 2 12345555555554
No 261
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=96.62 E-value=0.0023 Score=55.37 Aligned_cols=90 Identities=22% Similarity=0.454 Sum_probs=75.0
Q ss_pred cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEe-CCcchhhHhhcCCCcCCEEEEEeCCeeEeecCCC
Q 017126 58 SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD-ADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPR 136 (377)
Q Consensus 58 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd-~~~~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~ 136 (377)
++..++-+.||+.||+..+..+|+++-....+.. +....|+ ....+.+..++++.+.|++.+...--+..|.|.+
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~----i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r 149 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS----IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGER 149 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhccc----cccccHHHHhhcccchhccccccCCcceeeccccchhhcccc
Confidence 4578999999999999999999999998887763 2222222 2345778899999999999999998889999999
Q ss_pred CHHHHHHHHHhhcCC
Q 017126 137 KAELLVRYLKKFVAP 151 (377)
Q Consensus 137 ~~~~i~~~~~~~~~~ 151 (377)
+..+|++|-.+.++-
T Consensus 150 ~l~sLv~fy~~i~~~ 164 (319)
T KOG2640|consen 150 DLASLVNFYTEITPM 164 (319)
T ss_pred cHHHHHHHHHhhccc
Confidence 999999999888763
No 262
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.58 E-value=0.011 Score=43.06 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=43.2
Q ss_pred hhHHHHHcCCCeEEEEEE----CCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhH----hhcCCCcCCEEE
Q 017126 51 SNFDSAISSFDYILVDFY----APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA----SKQEIDAFPTLK 122 (377)
Q Consensus 51 ~~f~~~~~~~~~~~v~f~----~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~----~~~~i~~~P~~~ 122 (377)
+..+++++++ .++|+-. .|||++|++....+.+.. +.+..+|..++++.. +.-|-..+|.++
T Consensus 3 ~~v~~~i~~~-~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~---------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf 72 (97)
T TIGR00365 3 ERIKEQIKEN-PVVLYMKGTPQFPQCGFSARAVQILKACG---------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY 72 (97)
T ss_pred HHHHHHhccC-CEEEEEccCCCCCCCchHHHHHHHHHHcC---------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 3445566664 4444443 389999998877776532 556678887766543 345667889884
Q ss_pred EEeCCeeE
Q 017126 123 IFMHGIPT 130 (377)
Q Consensus 123 ~~~~g~~~ 130 (377)
-+|+.+
T Consensus 73 --i~g~~i 78 (97)
T TIGR00365 73 --VKGEFV 78 (97)
T ss_pred --ECCEEE
Confidence 455544
No 263
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=96.51 E-value=0.07 Score=41.62 Aligned_cols=98 Identities=14% Similarity=0.191 Sum_probs=63.6
Q ss_pred CCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEE-EEeCCC-CceeccC
Q 017126 269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMV-VWDGNE-NYLTVIG 345 (377)
Q Consensus 269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~-i~~~~~-~~~~~~~ 345 (377)
.++++++-|+. +-........+.|+++|+++++ ..|..+|.++.+++++.|++ .+.|+++ +++..+ .-....|
T Consensus 22 ~~~lVVvdF~A-~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I---~~~~t~~~ffk~g~~~vd~~tG 97 (142)
T PLN00410 22 EERLVVIRFGH-DWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYEL---YDPCTVMFFFRNKHIMIDLGTG 97 (142)
T ss_pred CCCEEEEEEEC-CCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCc---cCCCcEEEEEECCeEEEEEecc
Confidence 34667766665 3455556777899999999998 77899999999999999999 4455555 776543 2222222
Q ss_pred CC-C-CCcccchhhHHHHHHHHhcCcc
Q 017126 346 SE-S-IDEEDQGSQISRFLEGYREGRT 370 (377)
Q Consensus 346 ~~-~-~~~~~t~e~i~~Fi~~~~~Gkl 370 (377)
.. . .....+.+++.+-++.++.|-.
T Consensus 98 ~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 98 NNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred cccccccccCCHHHHHHHHHHHHHHHh
Confidence 10 0 0013456677776666665543
No 264
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=96.47 E-value=0.076 Score=39.53 Aligned_cols=65 Identities=12% Similarity=0.246 Sum_probs=53.2
Q ss_pred CCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCC
Q 017126 269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 337 (377)
Q Consensus 269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~ 337 (377)
.++++++-|.. +-........+.|.++|.++++ +.|..||.++.+++++.+++ ...|+++++..+
T Consensus 13 ~~klVVVdF~a-~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I---~amPtfvffkng 78 (114)
T cd02986 13 AEKVLVLRFGR-DEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDI---SYIPSTIFFFNG 78 (114)
T ss_pred CCCEEEEEEeC-CCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCc---eeCcEEEEEECC
Confidence 34666666654 4455556777899999999999 99999999999999999999 778999988754
No 265
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.45 E-value=0.14 Score=49.74 Aligned_cols=114 Identities=11% Similarity=0.112 Sum_probs=91.1
Q ss_pred CCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhh---CCCcccccChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHH
Q 017126 216 DKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN---FLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTT 292 (377)
Q Consensus 216 ~~~P~l~~~~~~~~~~~~~~g~~~~~~l~~fi~~~---~~p~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 292 (377)
...|++.+...+......|.|--.-.++..||..- +-+ -+.++++..+.+..-.+|..+.+|...+.+........
T Consensus 60 ~~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~-~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~ 138 (515)
T TIGR03140 60 LRKPSFTILRDGADTGIRFAGIPGGHEFTSLVLAILQVGGH-GPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQA 138 (515)
T ss_pred CCCCeEEEecCCcccceEEEecCCcHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHH
Confidence 34699988755444567888887777888887553 333 47788888888776667887777776777777888889
Q ss_pred HHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEE
Q 017126 293 LKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (377)
Q Consensus 293 l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i 333 (377)
+.+++...+++..-++|+..++++++.+++ ...|++++
T Consensus 139 ~~~~a~~~p~i~~~~id~~~~~~~~~~~~v---~~VP~~~i 176 (515)
T TIGR03140 139 LNQMALLNPNISHTMIDGALFQDEVEALGI---QGVPAVFL 176 (515)
T ss_pred HHHHHHhCCCceEEEEEchhCHHHHHhcCC---cccCEEEE
Confidence 999999999999999999999999999999 78999987
No 266
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.44 E-value=0.12 Score=50.13 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=91.1
Q ss_pred CCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhh--CCCcccccChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHH
Q 017126 217 KVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN--FLPLSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLK 294 (377)
Q Consensus 217 ~~P~l~~~~~~~~~~~~~~g~~~~~~l~~fi~~~--~~p~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 294 (377)
..|++.+...+......|.|--.-.++..||..- .-..-+.++++..+.+..-.+|.-+.+|...+.+........+.
T Consensus 60 ~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~ 139 (517)
T PRK15317 60 RKPSFSITRPGEDTGVRFAGIPMGHEFTSLVLALLQVGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALN 139 (517)
T ss_pred CCCEEEEEcCCccceEEEEecCccHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHH
Confidence 3699888865444557888888888888887654 12234667888888777667788777777777888888889999
Q ss_pred HHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEE
Q 017126 295 AAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (377)
Q Consensus 295 ~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i 333 (377)
+++...+++.+-++|+..++++++.+++ ...|++++
T Consensus 140 ~~a~~~~~i~~~~id~~~~~~~~~~~~v---~~VP~~~i 175 (517)
T PRK15317 140 LMAVLNPNITHTMIDGALFQDEVEARNI---MAVPTVFL 175 (517)
T ss_pred HHHHhCCCceEEEEEchhCHhHHHhcCC---cccCEEEE
Confidence 9999989999999999999999999999 78999976
No 267
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.014 Score=40.69 Aligned_cols=51 Identities=22% Similarity=0.398 Sum_probs=36.3
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcch-----hhHhhc-CCCcCCEEEE
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-----RLASKQ-EIDAFPTLKI 123 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-----~~~~~~-~i~~~P~~~~ 123 (377)
++.|..++|++|++....+. ..+ +.+..++.++++ +..++. |.+.+|.|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g--~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKG--VDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcC--CCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 56788999999998877666 222 666777776554 334444 7899999876
No 268
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=96.22 E-value=0.0067 Score=49.62 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=25.9
Q ss_pred EEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 017126 66 DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (377)
Q Consensus 66 ~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 104 (377)
+|+.|.|+.|-.++|.|.++...+.+. +.+-.|-..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~---i~~~~i~~~ 37 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK---IEFRFIPGG 37 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT---EEEEEEE--
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc---EEEEEEEcc
Confidence 689999999999999999999998753 655555443
No 269
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.15 E-value=0.024 Score=40.66 Aligned_cols=64 Identities=16% Similarity=0.359 Sum_probs=40.7
Q ss_pred HHHcCCCeEEEEEEC----CCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhh----HhhcCCCcCCEEEEEeC
Q 017126 55 SAISSFDYILVDFYA----PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL----ASKQEIDAFPTLKIFMH 126 (377)
Q Consensus 55 ~~~~~~~~~~v~f~~----~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~----~~~~~i~~~P~~~~~~~ 126 (377)
+.+++ .+++|.-.+ |||++|++....++... +.+-.+|..+++++ .+..|-..+|.+ |-+
T Consensus 3 ~~i~~-~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~---------i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~ 70 (90)
T cd03028 3 KLIKE-NPVVLFMKGTPEEPRCGFSRKVVQILNQLG---------VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVN 70 (90)
T ss_pred hhhcc-CCEEEEEcCCCCCCCCcHHHHHHHHHHHcC---------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EEC
Confidence 44545 444444433 79999998876665542 55677777766554 334577889998 446
Q ss_pred CeeE
Q 017126 127 GIPT 130 (377)
Q Consensus 127 g~~~ 130 (377)
|+.+
T Consensus 71 g~~i 74 (90)
T cd03028 71 GELV 74 (90)
T ss_pred CEEE
Confidence 6544
No 270
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.10 E-value=0.024 Score=40.80 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=42.4
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeC--Ccc------------------------------hhhHh
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA--DKY------------------------------SRLAS 111 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~--~~~------------------------------~~~~~ 111 (377)
++.|+++.|++|..+.+.+.++.....+ ++.+..+.. ... ....+
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 3679999999999999999998743322 355554443 221 23567
Q ss_pred hcCCCcCCEEEEEe
Q 017126 112 KQEIDAFPTLKIFM 125 (377)
Q Consensus 112 ~~~i~~~P~~~~~~ 125 (377)
++|+.++|++++..
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 78999999999875
No 271
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.03 E-value=0.045 Score=47.74 Aligned_cols=109 Identities=15% Similarity=0.261 Sum_probs=64.2
Q ss_pred CCcccccC-hhhHHh-hhcC--CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCC
Q 017126 252 LPLSVPIN-QDTLNL-LKDD--KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSK 327 (377)
Q Consensus 252 ~p~~~~l~-~~~~~~-~~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~ 327 (377)
+..+.+++ .+.+-. +... ...+++.|++ ...+....+-..|..+|.+|+.+.|+-+.+..-+ +...|.. ..
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~-~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~---~~ 198 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYE-PGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPD---KN 198 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE--TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-T---TC
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEe-CCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcc---cC
Confidence 34455664 344433 3322 2345555555 4455666777899999999999999999887544 6667766 78
Q ss_pred CCeEEEEeCCCCceeccCC-CCCCcccchhhHHHHHHHH
Q 017126 328 LPKMVVWDGNENYLTVIGS-ESIDEEDQGSQISRFLEGY 365 (377)
Q Consensus 328 ~P~l~i~~~~~~~~~~~~~-~~~~~~~t~e~i~~Fi~~~ 365 (377)
+|+|++|.......-+.+- ..+.++++.++|..||..+
T Consensus 199 LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 199 LPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp -SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999999975322222221 1234578899999999863
No 272
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=96.02 E-value=0.073 Score=40.65 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=65.5
Q ss_pred cChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHH-HH--HHHHHh-CCCcEEEEEeccchhhHHhh--------cCCCCC
Q 017126 258 INQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVT-TL--KAAASA-NRELVFCYVGIKQFADFADT--------FEANKK 325 (377)
Q Consensus 258 l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~l--~~~a~~-~~~~~f~~vd~~~~~~~~~~--------~gi~~~ 325 (377)
.+.+.+......++|+++.|.. +-....+.+.+ .+ .+++.. .+++.++.+|.++.++..+. +|.
T Consensus 3 ~~~eal~~Ak~~~KpVll~f~a-~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~--- 78 (124)
T cd02955 3 WGEEAFEKARREDKPIFLSIGY-STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQ--- 78 (124)
T ss_pred CCHHHHHHHHHcCCeEEEEEcc-CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCC---
Confidence 3456677777778888887754 23333333322 12 234444 34577888998876665442 455
Q ss_pred CCCCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHh
Q 017126 326 SKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 366 (377)
Q Consensus 326 ~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~ 366 (377)
.+.|++++++++++-..-.+.+...++++...+..+++.+.
T Consensus 79 ~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (124)
T cd02955 79 GGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIR 119 (124)
T ss_pred CCCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence 78999999999865433334444456677778888888764
No 273
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=95.87 E-value=0.39 Score=35.97 Aligned_cols=103 Identities=20% Similarity=0.335 Sum_probs=62.6
Q ss_pred cccccChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHH----HhCCCcEEEEEeccc-----hhhHHhhcCCCC
Q 017126 254 LSVPINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAA----SANRELVFCYVGIKQ-----FADFADTFEANK 324 (377)
Q Consensus 254 ~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a----~~~~~~~f~~vd~~~-----~~~~~~~~gi~~ 324 (377)
....|+.-+++.+...- +.+++=||....- -+-++.+.++| ..-.++.++.|-.++ +.++++.|++ .
T Consensus 5 G~v~LD~~tFdKvi~kf-~~~LVKFD~ayPy--GeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i-~ 80 (126)
T PF07912_consen 5 GCVPLDELTFDKVIPKF-KYVLVKFDVAYPY--GEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKI-D 80 (126)
T ss_dssp TSEEESTTHHHHHGGGS-SEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT--S
T ss_pred ceeeccceehhheeccC-ceEEEEEeccCCC--cchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCC-C
Confidence 34567788888877665 4444555543321 12233455555 334458888885553 4789999999 6
Q ss_pred CCCCCeEEEEeCC-CCceeccCCCCCCcccchhhHHHHHHH
Q 017126 325 KSKLPKMVVWDGN-ENYLTVIGSESIDEEDQGSQISRFLEG 364 (377)
Q Consensus 325 ~~~~P~l~i~~~~-~~~~~~~~~~~~~~~~t~e~i~~Fi~~ 364 (377)
+.++|.+.++..+ ..+..++ ..+++|.++|++|+.+
T Consensus 81 ke~fPv~~LF~~~~~~pv~~p----~~~~~t~~~l~~fvk~ 117 (126)
T PF07912_consen 81 KEDFPVIYLFVGDKEEPVRYP----FDGDVTADNLQRFVKS 117 (126)
T ss_dssp CCC-SEEEEEESSTTSEEEE-----TCS-S-HHHHHHHHHH
T ss_pred cccCCEEEEecCCCCCCccCC----ccCCccHHHHHHHHHh
Confidence 7789999999964 3333332 2677899999999986
No 274
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.86 E-value=0.056 Score=38.62 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=51.8
Q ss_pred cCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEE
Q 017126 268 DDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (377)
Q Consensus 268 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i 333 (377)
.-+.|+-+.+|..............+++++..++++.+..+|..+.++.++.+|+ ...|++++
T Consensus 9 ~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V---~~vPt~vi 71 (89)
T cd03026 9 RLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGI---MSVPAIFL 71 (89)
T ss_pred hcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCC---ccCCEEEE
Confidence 3446766666665666666777888999999998899999999998999999999 78999976
No 275
>PRK10638 glutaredoxin 3; Provisional
Probab=95.81 E-value=0.026 Score=39.71 Aligned_cols=56 Identities=11% Similarity=0.215 Sum_probs=39.0
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhh----HhhcCCCcCCEEEEEeCCeeE
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL----ASKQEIDAFPTLKIFMHGIPT 130 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~----~~~~~i~~~P~~~~~~~g~~~ 130 (377)
++.|..+||++|++....+.+. + +.+..+|++.+++. .+..+...+|+++ .+|+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----g----i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~--~~g~~i 63 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----G----VSFQEIPIDGDAAKREEMIKRSGRTTVPQIF--IDAQHI 63 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----C----CCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEEE
Confidence 5678889999999987777642 1 55667888766543 4445777899883 466555
No 276
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=95.73 E-value=0.12 Score=38.37 Aligned_cols=95 Identities=12% Similarity=0.182 Sum_probs=59.8
Q ss_pred ChhhHHhhhcCC-CcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeC
Q 017126 259 NQDTLNLLKDDK-RKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (377)
Q Consensus 259 ~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~ 336 (377)
+.+.++.+.... ...++.++.+.+.. ..+.+.++|..+++ +.|++... ..+...+++ ..|.++++++
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~~----~~~~F~~vA~~~Rdd~~F~~t~~---~~~~~~~~~----~~~~vvl~rp 75 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEEDP----AYQLYQDAANSLREDYKFHHTFD---SEIFKSLKV----SPGQLVVFQP 75 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCCH----HHHHHHHHHHhcccCCEEEEECh---HHHHHhcCC----CCCceEEECc
Confidence 345566665555 77888888654443 34567888998865 88987776 456667776 2578999988
Q ss_pred CCCceeccCC-CCCCcc-cchhh-HHHHHHH
Q 017126 337 NENYLTVIGS-ESIDEE-DQGSQ-ISRFLEG 364 (377)
Q Consensus 337 ~~~~~~~~~~-~~~~~~-~t~e~-i~~Fi~~ 364 (377)
+.-...+.++ ..+.+. .+.++ |.+||+.
T Consensus 76 ~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 76 EKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 6322222222 222333 45545 9999874
No 277
>PRK10824 glutaredoxin-4; Provisional
Probab=95.71 E-value=0.03 Score=41.91 Aligned_cols=68 Identities=21% Similarity=0.320 Sum_probs=40.6
Q ss_pred hhHHHHHcCCCeEEEEEEC----CCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhh----cCCCcCCEEE
Q 017126 51 SNFDSAISSFDYILVDFYA----PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASK----QEIDAFPTLK 122 (377)
Q Consensus 51 ~~f~~~~~~~~~~~v~f~~----~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~----~~i~~~P~~~ 122 (377)
+-.++.+++ .+++|.--+ |||++|++....+.+.. +.+..+|..+++++... -|-+.+|.|+
T Consensus 6 ~~v~~~I~~-~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~---------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIF 75 (115)
T PRK10824 6 EKIQRQIAE-NPILLYMKGSPKLPSCGFSAQAVQALSACG---------ERFAYVDILQNPDIRAELPKYANWPTFPQLW 75 (115)
T ss_pred HHHHHHHhc-CCEEEEECCCCCCCCCchHHHHHHHHHHcC---------CCceEEEecCCHHHHHHHHHHhCCCCCCeEE
Confidence 344566666 444444433 69999999887776652 33445666666555443 3556777765
Q ss_pred EEeCCeeE
Q 017126 123 IFMHGIPT 130 (377)
Q Consensus 123 ~~~~g~~~ 130 (377)
+ +|+.+
T Consensus 76 I--~G~~I 81 (115)
T PRK10824 76 V--DGELV 81 (115)
T ss_pred E--CCEEE
Confidence 4 55444
No 278
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.049 Score=43.08 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=56.2
Q ss_pred cCCCCCccccccCCCCCEEEeChhhHHHHHcCCCeEEEEEE-CCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc-
Q 017126 28 GRGLSSEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY-APWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK- 105 (377)
Q Consensus 28 ~~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~v~f~-~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~- 105 (377)
..+..+|..+++..++..+.|++- .+++++++|| ..+++-|-.-+-.|+....++++.+ ..+..|..+.
T Consensus 5 ~~G~~aPdF~Lp~~~g~~v~Lsd~-------~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~Ds~ 75 (157)
T COG1225 5 KVGDKAPDFELPDQDGETVSLSDL-------RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPDSP 75 (157)
T ss_pred CCCCcCCCeEeecCCCCEEehHHh-------cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCCCH
Confidence 346778888998888888777654 5579999999 5678889899999999999888764 4444454432
Q ss_pred --chhhHhhcCC
Q 017126 106 --YSRLASKQEI 115 (377)
Q Consensus 106 --~~~~~~~~~i 115 (377)
+..+++++++
T Consensus 76 ~~~~~F~~k~~L 87 (157)
T COG1225 76 KSHKKFAEKHGL 87 (157)
T ss_pred HHHHHHHHHhCC
Confidence 3344444443
No 279
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.092 Score=38.82 Aligned_cols=65 Identities=17% Similarity=0.376 Sum_probs=53.6
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCC
Q 017126 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE 338 (377)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~ 338 (377)
++++++-|+. .-..........+.++|.+|+++.|..+|.++..++++.+++ ...|++++++...
T Consensus 21 ~kliVvdF~a-~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V---~~~PTf~f~k~g~ 85 (106)
T KOG0907|consen 21 DKLVVVDFYA-TWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNV---KAMPTFVFYKGGE 85 (106)
T ss_pred CCeEEEEEEC-CCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCc---eEeeEEEEEECCE
Confidence 4677776764 334445677889999999999999999999988889999999 8899999998753
No 280
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=95.40 E-value=0.085 Score=35.19 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=40.8
Q ss_pred CChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEE
Q 017126 281 ETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (377)
Q Consensus 281 ~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i 333 (377)
......+.....|++++..+.++.|..+|..+.+++.+.+|+ ...|++++
T Consensus 9 ~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i---~~vPti~i 58 (67)
T cd02973 9 PTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGV---MSVPAIVI 58 (67)
T ss_pred CCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCC---cccCEEEE
Confidence 444555677778888888877799999999988889999999 77899876
No 281
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=95.35 E-value=0.13 Score=41.64 Aligned_cols=116 Identities=12% Similarity=0.134 Sum_probs=77.8
Q ss_pred HHHHHHhhCCCcccccC-hhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcC
Q 017126 243 LEEFIKQNFLPLSVPIN-QDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFE 321 (377)
Q Consensus 243 l~~fi~~~~~p~~~~l~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~g 321 (377)
-.+|+... ..-+.++. ...+-..+.....++|-|+.+. ....+-.-.-|+.+|+.|-+.+|+.|++...|-++..++
T Consensus 57 r~~~~~~G-hG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~-f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~ 134 (211)
T KOG1672|consen 57 RKEWLSKG-HGEYEEVASEKDFFEEVKKSEKVVCHFYRPE-FFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLN 134 (211)
T ss_pred HHHHHHcC-CceEEEeccHHHHHHHhhcCceEEEEEEcCC-CcceehHHHHHHHHHHhcccceEEEEecccCceeeeeee
Confidence 34555543 33444444 5556666666678888888643 223334445788899999999999999999999999999
Q ss_pred CCCCCCCCeEEEEeCCCCceeccCCCCCC--cccchhhHHHHHH
Q 017126 322 ANKKSKLPKMVVWDGNENYLTVIGSESID--EEDQGSQISRFLE 363 (377)
Q Consensus 322 i~~~~~~P~l~i~~~~~~~~~~~~~~~~~--~~~t~e~i~~Fi~ 363 (377)
| .-+|+++++......-+..|..++. ++++.+.+..=|.
T Consensus 135 I---kVLP~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~ 175 (211)
T KOG1672|consen 135 I---KVLPTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLA 175 (211)
T ss_pred e---eEeeeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHh
Confidence 9 7899999998754322233332233 4567777766443
No 282
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=95.26 E-value=0.17 Score=38.24 Aligned_cols=66 Identities=18% Similarity=0.284 Sum_probs=50.1
Q ss_pred CCcEEEEEEeC------CChHHHHHHHHHHHHHHHhCCC-cEEEEEeccc-------hhhHHhhcCCCCCCCCCeEEEEe
Q 017126 270 KRKIVLAIVED------ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ-------FADFADTFEANKKSKLPKMVVWD 335 (377)
Q Consensus 270 ~~~~~i~~~~~------~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~-------~~~~~~~~gi~~~~~~P~l~i~~ 335 (377)
++|+++.|+.+ .=..........+++++.++++ +.|+.+|..+ ..++...+++ . ...|++++++
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~-~~iPT~~~~~ 98 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-T-TGVPTLLRWK 98 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-c-cCCCEEEEEc
Confidence 46888888763 2234446677899999999994 8999999865 3588889999 3 4899999996
Q ss_pred CC
Q 017126 336 GN 337 (377)
Q Consensus 336 ~~ 337 (377)
..
T Consensus 99 ~~ 100 (119)
T cd02952 99 TP 100 (119)
T ss_pred CC
Confidence 43
No 283
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.064 Score=45.18 Aligned_cols=96 Identities=22% Similarity=0.303 Sum_probs=71.1
Q ss_pred CceecCChHHHHHHHHccCCcccEEEeecCCh--------HHHHHHHHHhhhhhHHHHhhcchhhhhhhcCCCCCCeEEE
Q 017126 152 DVSILNSDAEVSDFVENAGTFFPLFIGFGLDE--------SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVA 223 (377)
Q Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~l~~ 223 (377)
+++.+.++.+++.-+...... .++|.|+..+ +.|..++.+|.+..+..+..+.-+..+..+||+..|+.++
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k-~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGK-LVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred CeEEecCcHHHHHhhhccCce-EEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 477888888888877766643 4777777654 5799999999887766666666788889999999999999
Q ss_pred EcCCCCCcccccCCCCHHHHHHHHHhh
Q 017126 224 LQPSYNEHNIFYGPFDEEFLEEFIKQN 250 (377)
Q Consensus 224 ~~~~~~~~~~~~g~~~~~~l~~fi~~~ 250 (377)
|+.+ .....+.|. +...|++-+.++
T Consensus 81 f~ng-~kid~~qGA-d~~gLe~kv~~~ 105 (288)
T KOG0908|consen 81 FRNG-VKIDQIQGA-DASGLEEKVAKY 105 (288)
T ss_pred EecC-eEeeeecCC-CHHHHHHHHHHH
Confidence 9863 333345554 666677777666
No 284
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=94.83 E-value=0.34 Score=39.30 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=53.9
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC--cEEEEEecc----------------------chhhHHhhcCCCCCC
Q 017126 271 RKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIK----------------------QFADFADTFEANKKS 326 (377)
Q Consensus 271 ~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~----------------------~~~~~~~~~gi~~~~ 326 (377)
++.++.|+. ............+.++++++.+ +.++.++.+ ......+.+|+ .
T Consensus 62 k~~~l~f~a-~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v---~ 137 (173)
T PRK03147 62 KGVFLNFWG-TWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV---G 137 (173)
T ss_pred CEEEEEEEC-CcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC---C
Confidence 555555553 3344445555666666666543 445555432 23567788888 6
Q ss_pred CCCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHH
Q 017126 327 KLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGY 365 (377)
Q Consensus 327 ~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~ 365 (377)
..|++++++.+++.... ..+..+.+++.++++++
T Consensus 138 ~~P~~~lid~~g~i~~~-----~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 138 PLPTTFLIDKDGKVVKV-----ITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CcCeEEEECCCCcEEEE-----EeCCCCHHHHHHHHHHh
Confidence 78999999988655433 14556788899988764
No 285
>PTZ00062 glutaredoxin; Provisional
Probab=94.59 E-value=0.37 Score=40.29 Aligned_cols=67 Identities=12% Similarity=0.169 Sum_probs=48.7
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCC
Q 017126 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE 338 (377)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~ 338 (377)
+.+..+...+...+++++...-.+..+...+.|..++++|+++.|..||.+ +++ ...|++++++..+
T Consensus 7 ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V---~~vPtfv~~~~g~ 73 (204)
T PTZ00062 7 EEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DAN---NEYGVFEFYQNSQ 73 (204)
T ss_pred HHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCc---ccceEEEEEECCE
Confidence 334444333323344455444567777888999999999999999999986 888 8899999998643
No 286
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=93.94 E-value=0.73 Score=39.05 Aligned_cols=59 Identities=10% Similarity=0.026 Sum_probs=47.0
Q ss_pred CCCCEEEeChhhH---HHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEe
Q 017126 41 IDGKVIELDESNF---DSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVD 102 (377)
Q Consensus 41 ~~~~v~~l~~~~f---~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd 102 (377)
.+.+|+.+++++. -...+.++|.++.|-+-.|++=..-.+.|.++++++.+. +.|..|-
T Consensus 80 Pns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~---adFl~VY 141 (237)
T PF00837_consen 80 PNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV---ADFLIVY 141 (237)
T ss_pred CCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh---hheehhh
Confidence 3688999988773 444478899999999999999999999999999998763 3444443
No 287
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=93.84 E-value=0.16 Score=36.23 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=48.3
Q ss_pred eecCChHHHHHHHHccCCcccEEEeecCCh-----HHHHHHHHHhhhhhHHHHhhcchhhhhhhcCCCCCCeEEEEcCC-
Q 017126 154 SILNSDAEVSDFVENAGTFFPLFIGFGLDE-----SVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPS- 227 (377)
Q Consensus 154 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~l~~~~~~- 227 (377)
.++.+.+++.. +. ..+..+|+|+.+. ..|+.+|..+++.+.|.+... +.+ ......+ +.+++|++.
T Consensus 2 kef~~~~eL~~-id---~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G--~~~-~~~~~~~-~~~i~frp~~ 73 (91)
T cd03070 2 KEFRNLDELNN-VD---RSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFG--DVT-KPERPPG-DNIIYFPPGH 73 (91)
T ss_pred ceecCHHHHHh-hC---cCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEec--ccc-ccccCCC-CCeEEECCCC
Confidence 45556555544 22 2335888988442 369999999999888877632 222 1222233 456777775
Q ss_pred CCCcccccCCCC
Q 017126 228 YNEHNIFYGPFD 239 (377)
Q Consensus 228 ~~~~~~~~g~~~ 239 (377)
......|.|.++
T Consensus 74 ~~~~~~y~G~~t 85 (91)
T cd03070 74 NAPDMVYLGSLT 85 (91)
T ss_pred CCCceEEccCCC
Confidence 555578999884
No 288
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=93.83 E-value=0.19 Score=40.19 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=40.0
Q ss_pred CCeEEEEEE-CCCChhHhhH-HHHHHHHHHHhhcCCCCe-EEEEEeCCc---chhhHhhcCC
Q 017126 60 FDYILVDFY-APWCGHCKRL-APQLDEAAPILAKLKEPI-VIAKVDADK---YSRLASKQEI 115 (377)
Q Consensus 60 ~~~~~v~f~-~~~C~~C~~~-~~~~~~~a~~~~~~~~~v-~~~~vd~~~---~~~~~~~~~i 115 (377)
++++++.|| +.||+.|-.- .+.|.+...++.+.+ + .+..|.++. ...+|+++++
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHHHHHHHHHhhCC
Confidence 356677776 7899999998 999999999998654 4 366666643 3456777776
No 289
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=93.77 E-value=0.77 Score=40.41 Aligned_cols=89 Identities=9% Similarity=0.003 Sum_probs=63.5
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccc---------hhhHHhhcCCCCCCCCCeEEEEeCC-C
Q 017126 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ---------FADFADTFEANKKSKLPKMVVWDGN-E 338 (377)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~---------~~~~~~~~gi~~~~~~P~l~i~~~~-~ 338 (377)
+++.++.|+. +.....+.....|+.+++++.- +..+.+|+.. ....++.+|+ ...|++++++.+ +
T Consensus 166 ~k~~Lv~F~A-swCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV---~~vPtl~Lv~~~~~ 241 (271)
T TIGR02740 166 KKSGLFFFFK-SDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKI---RTVPAVFLADPDPN 241 (271)
T ss_pred CCeEEEEEEC-CCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCC---CcCCeEEEEECCCC
Confidence 3566666665 4566677888999999999863 4455556532 2457788999 789999999984 5
Q ss_pred CceeccCCCCCCcccchhhHHHHHHHHhc
Q 017126 339 NYLTVIGSESIDEEDQGSQISRFLEGYRE 367 (377)
Q Consensus 339 ~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~ 367 (377)
+..... .|.++.++|.+.+.....
T Consensus 242 ~v~~v~-----~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 242 QFTPIG-----FGVMSADELVDRILLAAH 265 (271)
T ss_pred EEEEEE-----eCCCCHHHHHHHHHHHhc
Confidence 554332 466788899998887755
No 290
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.72 E-value=0.38 Score=45.68 Aligned_cols=92 Identities=12% Similarity=0.102 Sum_probs=55.9
Q ss_pred ceecCChHHHHHHHHccCCcccEEEeecCCh--------HHHHHHHHHhhh---hhH---HHHhhcchhhhhhhcCCCCC
Q 017126 153 VSILNSDAEVSDFVENAGTFFPLFIGFGLDE--------SVMSNLALKYKK---KAW---FAVAKDFSEDTMVLYDFDKV 218 (377)
Q Consensus 153 ~~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~~~~a~~~~~---~~~---~~~~~~~~~~~~~~~~v~~~ 218 (377)
+..++ ...++.-+...+. ..+|-|+.+. +.|+.+|+.... ... +..+...+..++..++|..+
T Consensus 41 ii~Ld-~~tf~~~v~~~~~--~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 41 IIELD-VDTFNAAVFGSRK--AKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY 117 (606)
T ss_pred eEEee-hhhhHHHhcccch--hHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence 44443 3356665655442 3566666553 568888776654 222 22334568899999999999
Q ss_pred CeEEEEcCCCCC---cccccCCCCHHHHHHHH
Q 017126 219 PALVALQPSYNE---HNIFYGPFDEEFLEEFI 247 (377)
Q Consensus 219 P~l~~~~~~~~~---~~~~~g~~~~~~l~~fi 247 (377)
|++.+|.+.... ...+.|.....++.+.+
T Consensus 118 Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l 149 (606)
T KOG1731|consen 118 PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQL 149 (606)
T ss_pred ceeeecCCccccCcCCCcccCCcchhhHHHHH
Confidence 999999886444 33445544444555444
No 291
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=93.71 E-value=0.28 Score=41.27 Aligned_cols=40 Identities=18% Similarity=0.453 Sum_probs=30.1
Q ss_pred CeEEEEEECCCChhHhhHHHHH---HHHHHHhhcCCCCeEEEEEeC
Q 017126 61 DYILVDFYAPWCGHCKRLAPQL---DEAAPILAKLKEPIVIAKVDA 103 (377)
Q Consensus 61 ~~~~v~f~~~~C~~C~~~~~~~---~~~a~~~~~~~~~v~~~~vd~ 103 (377)
++-+|.|++-.|+||..+.+.+ ..+.+.+.+ ++.+..+..
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~---~v~~~~~~~ 80 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE---GTKMTKYHV 80 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhCCC---CCeEEEecc
Confidence 5679999999999999999976 666766643 355555543
No 292
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=93.51 E-value=0.15 Score=47.72 Aligned_cols=51 Identities=14% Similarity=0.291 Sum_probs=36.8
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhH---hh---------cCCCcCCEEEE
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA---SK---------QEIDAFPTLKI 123 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~---~~---------~~i~~~P~~~~ 123 (377)
++.|+.+||++|++....+.+. + +.+-.+|+++++... ++ .|.+++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-------g--i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-------D--IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------C--CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6788999999998886666552 2 677788888776322 22 36788999966
No 293
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=1.3 Score=38.86 Aligned_cols=120 Identities=12% Similarity=0.203 Sum_probs=73.2
Q ss_pred HHHHHHHhhCCCcccccChhhHHhhhcCC-Cc-EEEEEEeCC----ChHHHHHHHHHHHHHHHhCCC---------cEEE
Q 017126 242 FLEEFIKQNFLPLSVPINQDTLNLLKDDK-RK-IVLAIVEDE----TEEKSQKLVTTLKAAASANRE---------LVFC 306 (377)
Q Consensus 242 ~l~~fi~~~~~p~~~~l~~~~~~~~~~~~-~~-~~i~~~~~~----~~~~~~~~~~~l~~~a~~~~~---------~~f~ 306 (377)
++.+-+.-.+...+..++.+.+..+...+ ++ .++++++.. ...-..+..+.++.+|..+.. +-|+
T Consensus 29 kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~ 108 (331)
T KOG2603|consen 29 KVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFC 108 (331)
T ss_pred HHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEE
Confidence 34444443456667777887777765432 22 333333321 122223444677777775331 7799
Q ss_pred EEeccchhhHHhhcCCCCCCCCCeEEEEeCCCCceeccC---CCCCCcccchhhHHHHHHHHh
Q 017126 307 YVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIG---SESIDEEDQGSQISRFLEGYR 366 (377)
Q Consensus 307 ~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~---~~~~~~~~t~e~i~~Fi~~~~ 366 (377)
.||-++-++..+.+++ ...|.++++.++..-....+ ..+.. ...|++.+|+++.-
T Consensus 109 ~Vd~~e~p~~Fq~l~l---n~~P~l~~f~P~~~n~~~s~~~d~~~~g--~~Ae~iaqfv~~~t 166 (331)
T KOG2603|consen 109 MVDYDESPQVFQQLNL---NNVPHLVLFSPAKGNKKRSDQMDQQDLG--FEAEQIAQFVADRT 166 (331)
T ss_pred EEeccccHHHHHHhcc---cCCCeEEEeCCCccccccCccchhhhcc--hhHHHHHHHHHHhh
Confidence 9999999999999999 77999999988421111111 11222 22789999999843
No 294
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=93.38 E-value=0.53 Score=38.73 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=68.1
Q ss_pred CCCCEEEe-ChhhHHHHHcCC---CeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCC
Q 017126 41 IDGKVIEL-DESNFDSAISSF---DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID 116 (377)
Q Consensus 41 ~~~~v~~l-~~~~f~~~~~~~---~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~ 116 (377)
.-+.|++| +.+.|-..|.+. -.++|..|-+.-.-|..+...+.=+|.++.. ++|.++-.+ +....++|...
T Consensus 136 ~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~----vKFckikss-~~gas~~F~~n 210 (273)
T KOG3171|consen 136 RYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI----VKFCKIKSS-NTGASDRFSLN 210 (273)
T ss_pred ccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc----eeEEEeeec-cccchhhhccc
Confidence 34688888 567888888433 4778899999999999999988888876643 888888654 34566889999
Q ss_pred cCCEEEEEeCCeeEe
Q 017126 117 AFPTLKIFMHGIPTE 131 (377)
Q Consensus 117 ~~P~~~~~~~g~~~~ 131 (377)
.+|++.+|++|+.+.
T Consensus 211 ~lP~LliYkgGeLIg 225 (273)
T KOG3171|consen 211 VLPTLLIYKGGELIG 225 (273)
T ss_pred CCceEEEeeCCchhH
Confidence 999999999997664
No 295
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.22 E-value=0.49 Score=34.75 Aligned_cols=63 Identities=21% Similarity=0.308 Sum_probs=39.8
Q ss_pred hHHHHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcch-hhHhh----cCCCcCCEEEE
Q 017126 52 NFDSAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS-RLASK----QEIDAFPTLKI 123 (377)
Q Consensus 52 ~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~-~~~~~----~~i~~~P~~~~ 123 (377)
..++.+.+ .+ +|.|..+||+.|+++...|.+ .+....+..+|-..+. ++-+. -+.+.+|.+++
T Consensus 6 ~v~~~i~~-~~-VVifSKs~C~~c~~~k~ll~~-------~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 6 KVRKMISE-NP-VVIFSKSSCPYCHRAKELLSD-------LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHHhhc-CC-EEEEECCcCchHHHHHHHHHh-------CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 35555644 33 566889999999997777776 2333666777765443 33332 34567888765
No 296
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=93.22 E-value=0.48 Score=35.23 Aligned_cols=84 Identities=15% Similarity=0.238 Sum_probs=49.9
Q ss_pred CCCcEEEEEEeCCChHHHHHHHHHHH---HHHHhCCC-cEEEEEeccch--------------------hhHHhhcCCCC
Q 017126 269 DKRKIVLAIVEDETEEKSQKLVTTLK---AAASANRE-LVFCYVGIKQF--------------------ADFADTFEANK 324 (377)
Q Consensus 269 ~~~~~~i~~~~~~~~~~~~~~~~~l~---~~a~~~~~-~~f~~vd~~~~--------------------~~~~~~~gi~~ 324 (377)
++++.+++|++ ......+.+.+.+. .+...... +.+..++..+. .++++.+|+
T Consensus 4 ~~k~~v~~F~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-- 80 (112)
T PF13098_consen 4 NGKPIVVVFTD-PWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV-- 80 (112)
T ss_dssp TSSEEEEEEE--TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT---
T ss_pred CCCEEEEEEEC-CCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC--
Confidence 45777777764 45566666665555 44555443 66666665532 347888999
Q ss_pred CCCCCeEEEEeCCCC-ceeccCCCCCCcccchhhHHHHH
Q 017126 325 KSKLPKMVVWDGNEN-YLTVIGSESIDEEDQGSQISRFL 362 (377)
Q Consensus 325 ~~~~P~l~i~~~~~~-~~~~~~~~~~~~~~t~e~i~~Fi 362 (377)
...|++++++.+++ .... .|-++.+++.+++
T Consensus 81 -~gtPt~~~~d~~G~~v~~~------~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 -NGTPTIVFLDKDGKIVYRI------PGYLSPEELLKML 112 (112)
T ss_dssp --SSSEEEECTTTSCEEEEE------ESS--HHHHHHHH
T ss_pred -CccCEEEEEcCCCCEEEEe------cCCCCHHHHHhhC
Confidence 77899999997754 3223 4445667777654
No 297
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=92.90 E-value=0.18 Score=41.11 Aligned_cols=42 Identities=26% Similarity=0.433 Sum_probs=33.2
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~ 103 (377)
..++.++.|+...|++|+.+++.+..+..++.+ ++.+..+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~---~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK---DVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC---CceEEEcCC
Confidence 568899999999999999999999998887633 355554443
No 298
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=92.88 E-value=1.3 Score=43.60 Aligned_cols=91 Identities=9% Similarity=0.156 Sum_probs=59.8
Q ss_pred cCCCcEEEEEEeCCChHHHHHHHHH-H--HHHHHhCCCcEEEEEeccc----hhhHHhhcCCCCCCCCCeEEEEeCCCCc
Q 017126 268 DDKRKIVLAIVEDETEEKSQKLVTT-L--KAAASANRELVFCYVGIKQ----FADFADTFEANKKSKLPKMVVWDGNENY 340 (377)
Q Consensus 268 ~~~~~~~i~~~~~~~~~~~~~~~~~-l--~~~a~~~~~~~f~~vd~~~----~~~~~~~~gi~~~~~~P~l~i~~~~~~~ 340 (377)
..++++++.|+.+ -....+..... + .++.++++++.+..+|.++ ..++++.+++ ...|++++++.+++-
T Consensus 472 ~~gK~VlVdF~A~-WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v---~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 472 GKGKPVMLDLYAD-WCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNV---LGLPTILFFDAQGQE 547 (571)
T ss_pred hcCCcEEEEEECC-cCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCC---CCCCEEEEECCCCCC
Confidence 3457888877753 23333333322 2 4566666678888888764 3578899999 789999999976543
Q ss_pred e-eccCCCCCCcccchhhHHHHHHHHh
Q 017126 341 L-TVIGSESIDEEDQGSQISRFLEGYR 366 (377)
Q Consensus 341 ~-~~~~~~~~~~~~t~e~i~~Fi~~~~ 366 (377)
. ... +.+..+.+++.+++++..
T Consensus 548 i~~~r----~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 548 IPDAR----VTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred ccccc----ccCCCCHHHHHHHHHHhc
Confidence 1 111 256677889999988753
No 299
>PF13728 TraF: F plasmid transfer operon protein
Probab=92.69 E-value=0.79 Score=38.77 Aligned_cols=81 Identities=9% Similarity=0.006 Sum_probs=57.2
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEecc---------chhhHHhhcCCCCCCCCCeEEEEeCCC-C
Q 017126 271 RKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIK---------QFADFADTFEANKKSKLPKMVVWDGNE-N 339 (377)
Q Consensus 271 ~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~---------~~~~~~~~~gi~~~~~~P~l~i~~~~~-~ 339 (377)
..-+++|+ .++..-.+....+|+.++++|.= +..+.+||. .....++.||+ ...|++++++++. +
T Consensus 121 ~~gL~~F~-~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v---~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 121 KYGLFFFY-RSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV---KVTPALFLVNPNTKK 196 (215)
T ss_pred CeEEEEEE-cCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC---CcCCEEEEEECCCCe
Confidence 44455555 45677888999999999999953 556666764 23667788999 6899999999974 5
Q ss_pred ceeccCCCCCCcccchhhHHH
Q 017126 340 YLTVIGSESIDEEDQGSQISR 360 (377)
Q Consensus 340 ~~~~~~~~~~~~~~t~e~i~~ 360 (377)
+.... .|-++.++|.+
T Consensus 197 ~~pv~-----~G~~s~~~L~~ 212 (215)
T PF13728_consen 197 WYPVS-----QGFMSLDELED 212 (215)
T ss_pred EEEEe-----eecCCHHHHHH
Confidence 55543 45566666543
No 300
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=92.62 E-value=1.2 Score=38.48 Aligned_cols=90 Identities=6% Similarity=-0.049 Sum_probs=64.7
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhh---------HHhhcCCCCCCCCCeEEEEeCC-CC
Q 017126 271 RKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFAD---------FADTFEANKKSKLPKMVVWDGN-EN 339 (377)
Q Consensus 271 ~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~---------~~~~~gi~~~~~~P~l~i~~~~-~~ 339 (377)
..-+++|+. ++..-.+.+..+++..+++|.= +.-+.+||.-.+. .++.+|+ ...|++++++++ ++
T Consensus 144 ~~GL~fFy~-s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v---~~~PAl~Lv~~~t~~ 219 (248)
T PRK13703 144 HYGLMFFYR-GQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGV---KYFPALMLVDPKSGS 219 (248)
T ss_pred cceEEEEEC-CCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCC---cccceEEEEECCCCc
Confidence 345555554 6778888999999999999986 6667788853322 4467888 668999999997 46
Q ss_pred ceeccCCCCCCcccchhhHHHHHHHHhcCc
Q 017126 340 YLTVIGSESIDEEDQGSQISRFLEGYREGR 369 (377)
Q Consensus 340 ~~~~~~~~~~~~~~t~e~i~~Fi~~~~~Gk 369 (377)
+.... .|-++.++|.+=|..+..|.
T Consensus 220 ~~pv~-----~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 220 VRPLS-----YGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred EEEEe-----eccCCHHHHHHHHHHHHhcc
Confidence 65543 56778888877666666554
No 301
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=92.50 E-value=0.96 Score=43.44 Aligned_cols=96 Identities=16% Similarity=0.131 Sum_probs=67.8
Q ss_pred eecCChHHHHHHHHccCCcccEEEeecCChHH-HHHHHHHhhhhhHHHHh--------------hcchhhhhhhcCCCCC
Q 017126 154 SILNSDAEVSDFVENAGTFFPLFIGFGLDESV-MSNLALKYKKKAWFAVA--------------KDFSEDTMVLYDFDKV 218 (377)
Q Consensus 154 ~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~a~~~~~~~~~~~~--------------~~~~~~~~~~~~v~~~ 218 (377)
..+++..++++.+++++. +|+++.|+.++-. ++...+....+...... ...+.++.++|++-+.
T Consensus 457 q~~s~~~~L~~~la~~~~-~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKA-KPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCC-CcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 445566689999988875 5899999988643 22222211111111111 1235677899999999
Q ss_pred CeEEEEcCCCCCcccccCCCCHHHHHHHHHhh
Q 017126 219 PALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 250 (377)
Q Consensus 219 P~l~~~~~~~~~~~~~~g~~~~~~l~~fi~~~ 250 (377)
|++++|.+++++.....|.++.+.+.++++..
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 99999998888888899999999999999864
No 302
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=92.43 E-value=1.8 Score=32.39 Aligned_cols=94 Identities=18% Similarity=0.252 Sum_probs=51.5
Q ss_pred hhhcCCCcEEEEEEeCCChHHHHHHH-HHHH--HHHHhCC-CcEEEEEecc--chhhHHhhcCCCCCCCCCeEEEEeC-C
Q 017126 265 LLKDDKRKIVLAIVEDETEEKSQKLV-TTLK--AAASANR-ELVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDG-N 337 (377)
Q Consensus 265 ~~~~~~~~~~i~~~~~~~~~~~~~~~-~~l~--~~a~~~~-~~~f~~vd~~--~~~~~~~~~gi~~~~~~P~l~i~~~-~ 337 (377)
.....++++++.+..+. ....+.+. ..|. .+.+... ++.+..+|.. +..++++.+++ .++|+++++++ +
T Consensus 12 ~Ak~~~K~llv~~~~~~-c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~---~~~P~~~~i~~~~ 87 (114)
T cd02958 12 EAKSEKKWLLVYLQSED-EFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKV---DKYPHIAIIDPRT 87 (114)
T ss_pred HHHhhCceEEEEEecCC-cchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCc---cCCCeEEEEeCcc
Confidence 33444567776665433 22222221 1221 2222222 3445555665 34668888888 78999999999 5
Q ss_pred CCceeccCCCCCCcccchhhHHHHHHHHhc
Q 017126 338 ENYLTVIGSESIDEEDQGSQISRFLEGYRE 367 (377)
Q Consensus 338 ~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~ 367 (377)
+.--.. +.|.++++++.+-++.+..
T Consensus 88 g~~l~~-----~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 88 GEVLKV-----WSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred CcEeEE-----EcCCCCHHHHHHHHHHHHh
Confidence 532222 2455667777666666543
No 303
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=92.39 E-value=1.2 Score=38.57 Aligned_cols=88 Identities=9% Similarity=0.011 Sum_probs=62.7
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccch---------hhHHhhcCCCCCCCCCeEEEEeCC-CC
Q 017126 271 RKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQF---------ADFADTFEANKKSKLPKMVVWDGN-EN 339 (377)
Q Consensus 271 ~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~---------~~~~~~~gi~~~~~~P~l~i~~~~-~~ 339 (377)
..-+++|+. ++..-.+.+..+++..+++|.= +..+.+||.-. ...++.+|+ ...|++++++++ ++
T Consensus 151 ~~gL~fFy~-~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v---~~~Pal~Lv~~~t~~ 226 (256)
T TIGR02739 151 SYGLFFFYR-GKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGV---KYFPALYLVNPKSQK 226 (256)
T ss_pred ceeEEEEEC-CCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCC---ccCceEEEEECCCCc
Confidence 345555554 6677788999999999999985 66777788732 336778888 669999999997 56
Q ss_pred ceeccCCCCCCcccchhhHHHHHHHHhc
Q 017126 340 YLTVIGSESIDEEDQGSQISRFLEGYRE 367 (377)
Q Consensus 340 ~~~~~~~~~~~~~~t~e~i~~Fi~~~~~ 367 (377)
+.... .|-++.++|.+=|..+.+
T Consensus 227 ~~pv~-----~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 227 MSPLA-----YGFISQDELKERILNVLT 249 (256)
T ss_pred EEEEe-----eccCCHHHHHHHHHHHHh
Confidence 65543 566778877664444443
No 304
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=92.29 E-value=4.5 Score=33.97 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=36.8
Q ss_pred hhHHHHHcCCCeEEEEEECCCC-hhHhhHHHHHHHHHHHhh-cCCCCeEEEEEeCC
Q 017126 51 SNFDSAISSFDYILVDFYAPWC-GHCKRLAPQLDEAAPILA-KLKEPIVIAKVDAD 104 (377)
Q Consensus 51 ~~f~~~~~~~~~~~v~f~~~~C-~~C~~~~~~~~~~a~~~~-~~~~~v~~~~vd~~ 104 (377)
+.|...--++++++|.|-=+.| .-|-.....+.++.+++. +.+.++.+.-|-++
T Consensus 58 ~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD 113 (207)
T COG1999 58 KPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD 113 (207)
T ss_pred CEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC
Confidence 3333333377999999886667 568888888999988887 54555555555543
No 305
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=91.75 E-value=0.38 Score=35.45 Aligned_cols=81 Identities=16% Similarity=0.141 Sum_probs=56.4
Q ss_pred cccccChhhHHhhhcCCCcEEEEEEeC-CChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeE
Q 017126 254 LSVPINQDTLNLLKDDKRKIVLAIVED-ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKM 331 (377)
Q Consensus 254 ~~~~l~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l 331 (377)
.+++++.++++.+...+..+++++..+ ...++..+..=+|-++.+.+.+ +....++......+...||+ ...|++
T Consensus 10 g~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv---~~~PaL 86 (107)
T PF07449_consen 10 GWPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGV---RRWPAL 86 (107)
T ss_dssp TEEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT----TSSSEE
T ss_pred CCeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCC---ccCCeE
Confidence 355667777887776666666555432 1223334556688889999998 77777776666889999999 889999
Q ss_pred EEEeCC
Q 017126 332 VVWDGN 337 (377)
Q Consensus 332 ~i~~~~ 337 (377)
++++..
T Consensus 87 vf~R~g 92 (107)
T PF07449_consen 87 VFFRDG 92 (107)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999975
No 306
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=91.23 E-value=3.1 Score=30.50 Aligned_cols=92 Identities=12% Similarity=0.238 Sum_probs=54.1
Q ss_pred ChhhHHhhhcC-CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccch----hhHHhhcCCCCCCCCCeEE
Q 017126 259 NQDTLNLLKDD-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQF----ADFADTFEANKKSKLPKMV 332 (377)
Q Consensus 259 ~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~----~~~~~~~gi~~~~~~P~l~ 332 (377)
+.+.++.+... ....+++|-+.............+++......+ +.++++|.-++ ...+..||+ ...-|.++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V--~HeSPQ~i 83 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGV--KHESPQVI 83 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT------SSEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCC--CcCCCcEE
Confidence 34556554433 233444555656667777778888888888877 88999998875 557888999 47889999
Q ss_pred EEeCCC-CceeccCCCCCCcccchhhH
Q 017126 333 VWDGNE-NYLTVIGSESIDEEDQGSQI 358 (377)
Q Consensus 333 i~~~~~-~~~~~~~~~~~~~~~t~e~i 358 (377)
++.... .|..- ...||.++|
T Consensus 84 li~~g~~v~~aS------H~~It~~~l 104 (105)
T PF11009_consen 84 LIKNGKVVWHAS------HWDITAEAL 104 (105)
T ss_dssp EEETTEEEEEEE------GGG-SHHHH
T ss_pred EEECCEEEEECc------cccCCHHhc
Confidence 998753 23221 234566665
No 307
>smart00594 UAS UAS domain.
Probab=90.99 E-value=3 Score=31.63 Aligned_cols=55 Identities=15% Similarity=0.316 Sum_probs=36.0
Q ss_pred CcEEEEEecc--chhhHHhhcCCCCCCCCCeEEEEeCCC-C--ceeccCCCCCCcccchhhHHHHH
Q 017126 302 ELVFCYVGIK--QFADFADTFEANKKSKLPKMVVWDGNE-N--YLTVIGSESIDEEDQGSQISRFL 362 (377)
Q Consensus 302 ~~~f~~vd~~--~~~~~~~~~gi~~~~~~P~l~i~~~~~-~--~~~~~~~~~~~~~~t~e~i~~Fi 362 (377)
++.+..+|.. +..++++.+++ .++|+++++++++ . +.. .. -+.|.++.+++..++
T Consensus 62 ~fv~~~~dv~~~eg~~l~~~~~~---~~~P~~~~l~~~~g~~~~~~-~~--~~~G~~~~~~l~~~l 121 (122)
T smart00594 62 NFIFWQVDVDTSEGQRVSQFYKL---DSFPYVAIVDPRTGQRVIEW-VG--VVEGEISPEELMTFL 121 (122)
T ss_pred CEEEEEecCCChhHHHHHHhcCc---CCCCEEEEEecCCCceeEEE-ec--cccCCCCHHHHHHhh
Confidence 3545445554 34668888988 7899999999874 1 111 11 146777888877765
No 308
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=90.83 E-value=2.1 Score=32.24 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=44.6
Q ss_pred hhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCC-CcEEEEEeccchh-hHHhhcCCCCCCCCCeEEEEeCCC
Q 017126 261 DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANR-ELVFCYVGIKQFA-DFADTFEANKKSKLPKMVVWDGNE 338 (377)
Q Consensus 261 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~-~~~f~~vd~~~~~-~~~~~~gi~~~~~~P~l~i~~~~~ 338 (377)
+.+......++|+++.|+. +-....+.+...+.+.+.... ...|+.++.+..+ .....+++ .+...|++++++.++
T Consensus 10 ~al~~A~~~~kpVlV~F~a-~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~-~g~~vPt~~f~~~~G 87 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHK-TWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSP-DGGYIPRILFLDPSG 87 (117)
T ss_pred HHHHHHHHcCCcEEEEEeC-CcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhccc-CCCccceEEEECCCC
Confidence 3445555667888887764 334444555555555444322 2446666655433 34467777 333489999999764
No 309
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=90.51 E-value=2.6 Score=30.77 Aligned_cols=67 Identities=12% Similarity=0.174 Sum_probs=45.3
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCC--CcEEEEEeccch-----------------------hhHHhhcCCCC
Q 017126 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQF-----------------------ADFADTFEANK 324 (377)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~f~~vd~~~~-----------------------~~~~~~~gi~~ 324 (377)
+++.++.|+.. .....+.....+.++..++. ++.++.++.+.. ..+.+.||+
T Consensus 19 ~k~~ll~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (116)
T cd02966 19 GKVVLVNFWAS-WCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV-- 95 (116)
T ss_pred CCEEEEEeecc-cChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc--
Confidence 35666666543 34445666777777777774 466666666543 567788888
Q ss_pred CCCCCeEEEEeCCCCc
Q 017126 325 KSKLPKMVVWDGNENY 340 (377)
Q Consensus 325 ~~~~P~l~i~~~~~~~ 340 (377)
...|.+++++.+++.
T Consensus 96 -~~~P~~~l~d~~g~v 110 (116)
T cd02966 96 -RGLPTTFLIDRDGRI 110 (116)
T ss_pred -CccceEEEECCCCcE
Confidence 578999999987643
No 310
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=90.24 E-value=2.6 Score=40.62 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=33.8
Q ss_pred hhhHHhhcCCCCCCCCCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHH
Q 017126 313 FADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEG 364 (377)
Q Consensus 313 ~~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~ 364 (377)
..++.+.|++ ..+|+.++++.+++.... ..+.++.+.|.++|++
T Consensus 128 ~~~lak~fgV---~giPTt~IIDkdGkIV~~-----~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 128 GGTLAQSLNI---SVYPSWAIIGKDGDVQRI-----VKGSISEAQALALIRN 171 (521)
T ss_pred cHHHHHHcCC---CCcCeEEEEcCCCeEEEE-----EeCCCCHHHHHHHHHH
Confidence 4567788998 789999999987654433 2566788899999984
No 311
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=89.67 E-value=1.5 Score=35.68 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=36.6
Q ss_pred CCCeEEEEEECCCC-hhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q 017126 59 SFDYILVDFYAPWC-GHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD 104 (377)
Q Consensus 59 ~~~~~~v~f~~~~C-~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~ 104 (377)
.+++++|.|.=..| ..|-.....+.++.+.+.+.+.++.+..|.++
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 67999999888888 67988999999999999876556777777654
No 312
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=89.43 E-value=3.2 Score=31.91 Aligned_cols=80 Identities=14% Similarity=0.246 Sum_probs=48.4
Q ss_pred cChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCC
Q 017126 258 INQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 337 (377)
Q Consensus 258 l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~ 337 (377)
++.+....+....++.-++++...=..+.......+.++++..+++.+-++.-++++++.+.+--+.....|++++++.+
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 44555555555556666666655567777888999999999998877777766666776665533356889999999876
No 313
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=89.42 E-value=5.7 Score=29.94 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=49.5
Q ss_pred hhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCC
Q 017126 266 LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 337 (377)
Q Consensus 266 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~ 337 (377)
+......++++-|..+.++..-..-+.|.++|...++ .....+|.++-+++.+.|++ +.-|+++++-.+
T Consensus 18 I~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l---~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 18 ILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYEL---YDPPTVMFFFNN 87 (142)
T ss_pred HhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcc---cCCceEEEEEcC
Confidence 3333455666666666666666677889999999888 55566788888999999999 556776665543
No 314
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=89.37 E-value=2.1 Score=28.93 Aligned_cols=61 Identities=25% Similarity=0.249 Sum_probs=49.2
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEe
Q 017126 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM 125 (377)
Q Consensus 63 ~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~ 125 (377)
.+-+|-+..-+.+++....+.++-+... +..+.+-.||..++|++++.++|-..||++=-.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l--~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~ 63 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELL--GGPYELEVIDVLKQPQLAEEDKIVATPTLVKVL 63 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhc--CCcEEEEEEEcccCHhHHhhCCEEEechhhhcC
Confidence 4556666666888888888888877665 346999999999999999999999999987443
No 315
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=88.89 E-value=8.8 Score=31.56 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=73.9
Q ss_pred HHHHHHHHhhCCCcccccChhhH-Hhhhc-C-CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHH
Q 017126 241 EFLEEFIKQNFLPLSVPINQDTL-NLLKD-D-KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFA 317 (377)
Q Consensus 241 ~~l~~fi~~~~~p~~~~l~~~~~-~~~~~-~-~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~ 317 (377)
.+++.-...+.+..|.+++...+ ..+.. . +.++++..+ ...-+...-+...|+.+|..|+.+.|+-+-++. ..
T Consensus 79 ~E~r~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy-~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~---cI 154 (240)
T KOG3170|consen 79 AEWRATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLY-KQGVPLCALLSHHLQSLACKFPQIKFVKIPATT---CI 154 (240)
T ss_pred HHHHHHHHHhcccceeeccchHHHHHHHhccCccEEEEEee-ccccHHHHHHHHHHHHHhhcCCcceEEeccccc---cc
Confidence 34555566677888887776444 23322 2 234444343 455677777889999999999999998886642 22
Q ss_pred hhcCCCCCCCCCeEEEEeCCCCceeccCCCCCC-cccchhhHHHHHHH
Q 017126 318 DTFEANKKSKLPKMVVWDGNENYLTVIGSESID-EEDQGSQISRFLEG 364 (377)
Q Consensus 318 ~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~~~~-~~~t~e~i~~Fi~~ 364 (377)
-.| ....+|+++||.......-+.+--.+. ...|.+++..|+-+
T Consensus 155 pNY---Pe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q 199 (240)
T KOG3170|consen 155 PNY---PESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ 199 (240)
T ss_pred CCC---cccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence 223 346789999999753222223333333 45778888888865
No 316
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=88.84 E-value=5.7 Score=27.11 Aligned_cols=68 Identities=19% Similarity=0.360 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCCCceeccCCCCCCcccchhhHHHH
Q 017126 282 TEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRF 361 (377)
Q Consensus 282 ~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~F 361 (377)
+.+......+.++.++..+. +.+-.+|..+.+++ ..+|+ ...|+++| |. +..+ . ..-++.+.+.+|
T Consensus 9 ~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~-~~ygv---~~vPalvI-ng--~~~~-~-----G~~p~~~el~~~ 74 (76)
T PF13192_consen 9 GCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEI-EKYGV---MSVPALVI-NG--KVVF-V-----GRVPSKEELKEL 74 (76)
T ss_dssp SCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHH-HHTT----SSSSEEEE-TT--EEEE-E-----SS--HHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHH-HHcCC---CCCCEEEE-CC--EEEE-E-----ecCCCHHHHHHH
Confidence 35666788889999999885 88888888777777 99999 88999955 43 2222 1 114567788888
Q ss_pred HH
Q 017126 362 LE 363 (377)
Q Consensus 362 i~ 363 (377)
|+
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 317
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.94 E-value=1.1 Score=37.21 Aligned_cols=66 Identities=17% Similarity=0.274 Sum_probs=51.6
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC--cEEEEEeccchhhHHhhcCCC---CCCCCCeEEEEeCC
Q 017126 271 RKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEAN---KKSKLPKMVVWDGN 337 (377)
Q Consensus 271 ~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~---~~~~~P~l~i~~~~ 337 (377)
...++-|+..- .++.......+.+++.+|.. +.|+.+|...+++.+..|+++ -..++|+++++...
T Consensus 145 t~WlIeFfa~w-s~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~srQLPT~ilFq~g 215 (265)
T KOG0914|consen 145 TYWLIEFFACW-SPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSRQLPTYILFQKG 215 (265)
T ss_pred eEEEEEEEeec-ChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccccCCeEEEEccc
Confidence 34555566543 44455677888899999886 999999999999999999984 23789999999974
No 318
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=87.65 E-value=7.5 Score=31.94 Aligned_cols=48 Identities=10% Similarity=-0.027 Sum_probs=34.8
Q ss_pred hHHhhcCCCCCCCCCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHhcCcc
Q 017126 315 DFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRT 370 (377)
Q Consensus 315 ~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~Gkl 370 (377)
.+...||+ ...|+.++++.+++..... .+.++.++++++++..+...+
T Consensus 133 ~~~~~~gv---~~~P~t~vid~~G~i~~~~-----~G~~~~~~l~~~i~~~~~~~~ 180 (185)
T PRK15412 133 MLGLDLGV---YGAPETFLIDGNGIIRYRH-----AGDLNPRVWESEIKPLWEKYS 180 (185)
T ss_pred cHHHhcCC---CcCCeEEEECCCceEEEEE-----ecCCCHHHHHHHHHHHHHHHH
Confidence 34556777 6789999999987544332 566788899999998876543
No 319
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=87.63 E-value=7.9 Score=31.38 Aligned_cols=45 Identities=11% Similarity=-0.025 Sum_probs=32.6
Q ss_pred hhHHhhcCCCCCCCCCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHh
Q 017126 314 ADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYR 366 (377)
Q Consensus 314 ~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~ 366 (377)
.++.+.|++ .+.|+.++++.+++..... .+.++.+++.++++.++
T Consensus 127 ~~~~~~~~v---~~~P~~~~id~~G~i~~~~-----~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 127 GKLGLDLGV---YGAPETFLVDGNGVILYRH-----AGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CchHHhcCC---eeCCeEEEEcCCceEEEEE-----eccCCHHHHHHHHHHHh
Confidence 445666776 5689999999886543321 45677889999999877
No 320
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=87.62 E-value=5.3 Score=30.30 Aligned_cols=65 Identities=12% Similarity=0.099 Sum_probs=37.9
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEec-----------------------cchhhHHhhcCCCCCC
Q 017126 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGI-----------------------KQFADFADTFEANKKS 326 (377)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~-----------------------~~~~~~~~~~gi~~~~ 326 (377)
++++++.|+. ............+.++++.+. +.++.++. +....+++.+|+ .
T Consensus 25 gk~vvv~F~a-~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v---~ 99 (127)
T cd03010 25 GKPYLLNVWA-SWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGV---Y 99 (127)
T ss_pred CCEEEEEEEc-CcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCC---C
Confidence 4566666664 334444445566666665542 33333332 223456677777 6
Q ss_pred CCCeEEEEeCCCC
Q 017126 327 KLPKMVVWDGNEN 339 (377)
Q Consensus 327 ~~P~l~i~~~~~~ 339 (377)
..|+.++++.+++
T Consensus 100 ~~P~~~~ld~~G~ 112 (127)
T cd03010 100 GVPETFLIDGDGI 112 (127)
T ss_pred CCCeEEEECCCce
Confidence 7899999988764
No 321
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=87.51 E-value=3.3 Score=31.78 Aligned_cols=74 Identities=24% Similarity=0.344 Sum_probs=47.0
Q ss_pred EEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCc----CCEEEEEeCCeeEeecCCCCH
Q 017126 63 ILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDA----FPTLKIFMHGIPTEYYGPRKA 138 (377)
Q Consensus 63 ~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~----~P~~~~~~~g~~~~y~g~~~~ 138 (377)
-++.+++|.|+=|..+...++ .. .+.+..+..++-..+-+++||.. --|.++ +|..+ .|-..+
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk-------~~--Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy~v--EGHVPa 93 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK-------AN--GFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGYYV--EGHVPA 93 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH-------hC--CcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCEEE--eccCCH
Confidence 378899999999977654433 21 27777777777777778888862 222221 23222 466777
Q ss_pred HHHHHHHHhhc
Q 017126 139 ELLVRYLKKFV 149 (377)
Q Consensus 139 ~~i~~~~~~~~ 149 (377)
+.|..++.+.-
T Consensus 94 ~aI~~ll~~~p 104 (149)
T COG3019 94 EAIARLLAEKP 104 (149)
T ss_pred HHHHHHHhCCC
Confidence 77777775543
No 322
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=87.37 E-value=11 Score=30.42 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=38.8
Q ss_pred hhHHhhcCCCCCCCCCeEEEEeCCCCceeccCCC----CCCcccchhhHHHHHHHHhcCccccc
Q 017126 314 ADFADTFEANKKSKLPKMVVWDGNENYLTVIGSE----SIDEEDQGSQISRFLEGYREGRTEQK 373 (377)
Q Consensus 314 ~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~----~~~~~~t~e~i~~Fi~~~~~Gkl~~~ 373 (377)
..+.+.||+ ...|.+++++.+++..+..... ......+.+.+.+-|+..++|.--+.
T Consensus 99 ~~~~~~~~v---~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 159 (171)
T cd02969 99 QEVAKAYGA---ACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKPVPV 159 (171)
T ss_pred hHHHHHcCC---CcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCCCCc
Confidence 456677888 5679999999987554332111 00134677889999999999976554
No 323
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=87.23 E-value=6.3 Score=26.93 Aligned_cols=47 Identities=15% Similarity=-0.037 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEEE
Q 017126 281 ETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVV 333 (377)
Q Consensus 281 ~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i 333 (377)
......+...+.++++++++.. +.+..+|. .+-+..+|+ ...|++++
T Consensus 8 ~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~a~~~~v---~~vPti~i 55 (76)
T TIGR00412 8 TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNEILEAGV---TATPGVAV 55 (76)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHcCC---CcCCEEEE
Confidence 4556667788899999998876 77877772 334677888 88999999
No 324
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=86.46 E-value=4.6 Score=30.37 Aligned_cols=37 Identities=11% Similarity=0.099 Sum_probs=25.5
Q ss_pred hhHHhhcCCCCCCCCCeEEEEeCCCCceeccCCCCCCcccchhhHH
Q 017126 314 ADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQIS 359 (377)
Q Consensus 314 ~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~ 359 (377)
.++++.|++ ...|++++++.++..+.. .+-.++++|.
T Consensus 83 ~~~~~~~~i---~~~P~~~vid~~gi~~~~------~g~~~~~~~~ 119 (123)
T cd03011 83 GVISARWGV---SVTPAIVIVDPGGIVFVT------TGVTSEWGLR 119 (123)
T ss_pred cHHHHhCCC---CcccEEEEEcCCCeEEEE------eccCCHHHHH
Confidence 568888998 778999999987743333 3334555654
No 325
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=85.12 E-value=3.4 Score=30.90 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeC
Q 017126 77 RLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMH 126 (377)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~ 126 (377)
.+.+....+.+.+.+... . .+..-+|.+.++|+|..+|++++-.+
T Consensus 36 ~~~~t~~~~~~l~~~~~~-~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDP-C----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCC-C----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 777777777777765432 2 34445799999999999999999987
No 326
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=85.06 E-value=8.9 Score=25.99 Aligned_cols=73 Identities=15% Similarity=0.291 Sum_probs=40.6
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEe--CCeeEeecCCCCHHHH
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFM--HGIPTEYYGPRKAELL 141 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~--~g~~~~y~g~~~~~~i 141 (377)
+..|+.+.|+.|++.+-.+....- .+....+|-....++ +.-+-..+|++..=. +|.. -.....|
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi-------~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~-----l~eS~~I 68 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGI-------PYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ-----LVDSSVI 68 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC-------ceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE-----EEcHHHH
Confidence 456788999999888644333221 233333333222233 334556789887542 1322 2356778
Q ss_pred HHHHHhhc
Q 017126 142 VRYLKKFV 149 (377)
Q Consensus 142 ~~~~~~~~ 149 (377)
.+|+.+.+
T Consensus 69 ~~yL~~~~ 76 (77)
T cd03040 69 ISTLKTYL 76 (77)
T ss_pred HHHHHHHc
Confidence 88887765
No 327
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=84.82 E-value=3.1 Score=32.79 Aligned_cols=51 Identities=12% Similarity=0.170 Sum_probs=34.1
Q ss_pred EEEEECC------CChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhH----hhcCC----CcCCEEEE
Q 017126 64 LVDFYAP------WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLA----SKQEI----DAFPTLKI 123 (377)
Q Consensus 64 ~v~f~~~------~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~----~~~~i----~~~P~~~~ 123 (377)
+|.|+++ +|++|++....++.. .+.+-.+|.+.++++. +..+- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~---------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF---------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4556666 899998887766543 1677888987765543 33343 57787764
No 328
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=84.02 E-value=4.4 Score=31.12 Aligned_cols=65 Identities=9% Similarity=0.114 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCe------------eEeecCCCCHHHHHHHH
Q 017126 78 LAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI------------PTEYYGPRKAELLVRYL 145 (377)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~------------~~~y~g~~~~~~i~~~~ 145 (377)
+.+....+.+...+.+ . .+..-+|.+.++|+|..+|++++..++. ...-.|..+.+.-.+.+
T Consensus 38 ~~~T~~~i~~L~~~~~-~-----~~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~i 111 (130)
T TIGR02742 38 FKATATRIQSLIKDGG-K-----SGVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKM 111 (130)
T ss_pred HHHHHHHHHHHHhcCC-C-----CcEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHH
Confidence 4555666655544322 1 3333479999999999999999998774 22346777776666666
Q ss_pred Hhh
Q 017126 146 KKF 148 (377)
Q Consensus 146 ~~~ 148 (377)
.+.
T Consensus 112 a~~ 114 (130)
T TIGR02742 112 AQD 114 (130)
T ss_pred HHh
Confidence 543
No 329
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=83.86 E-value=8.3 Score=29.41 Aligned_cols=24 Identities=17% Similarity=0.516 Sum_probs=18.9
Q ss_pred hHHhhcCCCCCCCCCeEEEEeCCCCce
Q 017126 315 DFADTFEANKKSKLPKMVVWDGNENYL 341 (377)
Q Consensus 315 ~~~~~~gi~~~~~~P~l~i~~~~~~~~ 341 (377)
.+++.||+ ...|++++++.+++..
T Consensus 90 ~~~~~~~v---~~~P~~~lid~~G~i~ 113 (131)
T cd03009 90 RLNRTFKI---EGIPTLIILDADGEVV 113 (131)
T ss_pred HHHHHcCC---CCCCEEEEECCCCCEE
Confidence 46677888 7789999999887543
No 330
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=83.19 E-value=21 Score=28.31 Aligned_cols=85 Identities=9% Similarity=0.104 Sum_probs=53.3
Q ss_pred CcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccc---h-------hhHH-hhc---CCCCCCCCCeEEEEe
Q 017126 271 RKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ---F-------ADFA-DTF---EANKKSKLPKMVVWD 335 (377)
Q Consensus 271 ~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~---~-------~~~~-~~~---gi~~~~~~P~l~i~~ 335 (377)
.+.++.|+. +-..-.+.....|.++++++.- +..+.+|... + .... ..+ ++ ...|+.++++
T Consensus 51 ~~~lvnFWA-sWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v---~~iPTt~LID 126 (153)
T TIGR02738 51 DYALVFFYQ-STCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRP---VVTPATFLVN 126 (153)
T ss_pred CCEEEEEEC-CCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCC---CCCCeEEEEe
Confidence 445666665 4566667778899999988852 3334444321 1 1122 233 44 6789999999
Q ss_pred CCCC--ceeccCCCCCCcccchhhHHHHHHHH
Q 017126 336 GNEN--YLTVIGSESIDEEDQGSQISRFLEGY 365 (377)
Q Consensus 336 ~~~~--~~~~~~~~~~~~~~t~e~i~~Fi~~~ 365 (377)
.+++ +... .+.++.+++.+.+...
T Consensus 127 ~~G~~i~~~~------~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 127 VNTRKAYPVL------QGAVDEAELANRMDEI 152 (153)
T ss_pred CCCCEEEEEe------ecccCHHHHHHHHHHh
Confidence 9754 3233 5667788888887765
No 331
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=82.51 E-value=12 Score=28.60 Aligned_cols=66 Identities=17% Similarity=0.253 Sum_probs=47.9
Q ss_pred hhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEe
Q 017126 266 LKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQFADFADTFEANKKSKLPKMVVWD 335 (377)
Q Consensus 266 ~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~ 335 (377)
+......++++-|....++..-+.-+.|.++|.+-++ ..+..+|.++-+++.+.|.+ + .|+-+.+-
T Consensus 15 I~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel---~-dP~tvmFF 81 (133)
T PF02966_consen 15 ILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYEL---Y-DPCTVMFF 81 (133)
T ss_dssp HHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS-----SSEEEEEE
T ss_pred HhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhccccc---C-CCeEEEEE
Confidence 4444456666666666677777888899999999988 66777899999999999999 3 56644433
No 332
>PHA03075 glutaredoxin-like protein; Provisional
Probab=81.68 E-value=8.6 Score=28.51 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=27.3
Q ss_pred CeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 017126 61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103 (377)
Q Consensus 61 ~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~ 103 (377)
+.++|+|-.|.|+-|+.....+.++..+ ..+.+||.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~lede-------Y~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDE-------YDILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcc-------ccEEEEEe
Confidence 4679999999999998887777555543 44667763
No 333
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=80.83 E-value=13 Score=30.46 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=29.9
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~ 103 (377)
+..|+..-|+.|-...+.+.++.....+. .+...-+..
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~--~i~~~p~~l 39 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDV--EIEWRPFPL 39 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTC--EEEEEEESS
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCC--cEEEecccc
Confidence 67889999999999999999999988432 355555554
No 334
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=80.17 E-value=16 Score=24.85 Aligned_cols=71 Identities=18% Similarity=0.133 Sum_probs=38.8
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc----hhhHhhcCCCcCCEEEEEeCCeeEeecCCCCHH
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY----SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAE 139 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~----~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~ 139 (377)
+..++.++|+.|++..-.+.... +.+-.+++... +++.+..+-..+|+++.-.+|..+ ....
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g---------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l-----~es~ 67 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE---------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQM-----FESA 67 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC---------CcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEE-----EcHH
Confidence 34667789999987654433322 33333454432 234333455678998543233222 3466
Q ss_pred HHHHHHHhh
Q 017126 140 LLVRYLKKF 148 (377)
Q Consensus 140 ~i~~~~~~~ 148 (377)
.|.+|+.+.
T Consensus 68 ~I~~yL~~~ 76 (77)
T cd03041 68 DIVKYLFKT 76 (77)
T ss_pred HHHHHHHHh
Confidence 777777653
No 335
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=79.77 E-value=20 Score=25.77 Aligned_cols=71 Identities=17% Similarity=0.152 Sum_probs=43.9
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCe--eEeecCCC
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGI--PTEYYGPR 136 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~--~~~y~g~~ 136 (377)
++...++.|..+. ..|.......++++..-+ ++.+-..+... ..|++.+..+|+ .++|.|-=
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd----kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP 81 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD----KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIP 81 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC----ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecC
Confidence 4456677777665 788888777777776543 35554333211 479999988874 36788754
Q ss_pred CHHHHHHHH
Q 017126 137 KAELLVRYL 145 (377)
Q Consensus 137 ~~~~i~~~~ 145 (377)
.-.++..|+
T Consensus 82 ~GhEf~Sli 90 (94)
T cd02974 82 MGHEFTSLV 90 (94)
T ss_pred CchhHHHHH
Confidence 444444443
No 336
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=79.37 E-value=9 Score=37.78 Aligned_cols=82 Identities=24% Similarity=0.298 Sum_probs=63.5
Q ss_pred EEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHHH-H--HHHHHHhhcCCCCeEEEEEeCCcchhhHhhcC--------
Q 017126 46 IELDESNFDSAISSFDYILVDFYAPWCGHCKRLAPQ-L--DEAAPILAKLKEPIVIAKVDADKYSRLASKQE-------- 114 (377)
Q Consensus 46 ~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~-------- 114 (377)
....++.|.++-.+++|+|+-.-.+||.-|+-+..+ | .++|..+++. +.-++||-++=|++-+-|.
T Consensus 29 ~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~---FV~IKVDREERPDvD~~Ym~~~q~~tG 105 (667)
T COG1331 29 YPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN---FVPVKVDREERPDVDSLYMNASQAITG 105 (667)
T ss_pred cccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC---ceeeeEChhhccCHHHHHHHHHHHhcc
Confidence 557889999999999999999999999999987764 3 4578887663 8899999988877655543
Q ss_pred CCcCCEEEEEe-CCeeE
Q 017126 115 IDAFPTLKIFM-HGIPT 130 (377)
Q Consensus 115 i~~~P~~~~~~-~g~~~ 130 (377)
-.|.|-=++.. +|++.
T Consensus 106 ~GGWPLtVfLTPd~kPF 122 (667)
T COG1331 106 QGGWPLTVFLTPDGKPF 122 (667)
T ss_pred CCCCceeEEECCCCcee
Confidence 45788666554 46665
No 337
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=78.93 E-value=20 Score=33.18 Aligned_cols=91 Identities=15% Similarity=0.140 Sum_probs=64.3
Q ss_pred cCCCeEEEEEECCCChhHhhHHH-HHHHHHHHhhcCCCCeEEEEEeCC--cchhhHhhcCCCcCCEEEEEeC-CeeEe-e
Q 017126 58 SSFDYILVDFYAPWCGHCKRLAP-QLDEAAPILAKLKEPIVIAKVDAD--KYSRLASKQEIDAFPTLKIFMH-GIPTE-Y 132 (377)
Q Consensus 58 ~~~~~~~v~f~~~~C~~C~~~~~-~~~~~a~~~~~~~~~v~~~~vd~~--~~~~~~~~~~i~~~P~~~~~~~-g~~~~-y 132 (377)
+..+.+||-|.+........+.. .|......-.. ...+..++|+.. ....+..-|.+..+|+++++.. |.++. -
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~l-s~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevi 94 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSL-SKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVI 94 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhh-hcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEe
Confidence 46678888888888888888873 55554332111 224666666653 3456777889999999999964 88887 6
Q ss_pred cCCCCHHHHHHHHHhhc
Q 017126 133 YGPRKAELLVRYLKKFV 149 (377)
Q Consensus 133 ~g~~~~~~i~~~~~~~~ 149 (377)
.|..++++|.+-|.+..
T Consensus 95 tg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 95 TGFVTADELASSIEKVW 111 (506)
T ss_pred eccccHHHHHHHHHHHH
Confidence 88888999887666543
No 338
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=78.67 E-value=4.7 Score=28.67 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=32.6
Q ss_pred cEEEeecCChHHHHHHHHHhhh-hhHHHHhhcchhhhhhhcCCCCCCeEEEEcCC
Q 017126 174 PLFIGFGLDESVMSNLALKYKK-KAWFAVAKDFSEDTMVLYDFDKVPALVALQPS 227 (377)
Q Consensus 174 ~~~v~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~v~~~P~l~~~~~~ 227 (377)
.+.|...++.+.+++....... -..+.........+...|++.+.|+++++.++
T Consensus 38 ~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~~ 92 (95)
T PF13905_consen 38 FVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIPTLVLLDPD 92 (95)
T ss_dssp EEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSSEEEEEETT
T ss_pred EEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCCEEEEECCC
Confidence 4455555555667666665522 11122222335788899999999999999864
No 339
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=78.37 E-value=13 Score=22.96 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHh---hcCCCCCCCCCeEEEEeCC
Q 017126 284 EKSQKLVTTLKAAASANRELVFCYVGIKQFADFAD---TFEANKKSKLPKMVVWDGN 337 (377)
Q Consensus 284 ~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~---~~gi~~~~~~P~l~i~~~~ 337 (377)
.........+.+++....++.+..++......... .+++ ...|++++++.+
T Consensus 10 ~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~P~~~~~~~~ 63 (69)
T cd01659 10 PFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV---GGVPTLVVFGPG 63 (69)
T ss_pred hhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC---ccccEEEEEeCC
Confidence 44455556666664445568899998887665554 5555 789999999865
No 340
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=77.07 E-value=2.5 Score=31.05 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=22.0
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc
Q 017126 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~ 106 (377)
..|+.++|+.|++....+++. + +.+-.+|..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~--i~~~~idi~~~ 34 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-------G--IEYEFIDYLKE 34 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------C--CCcEEEeeccC
Confidence 568899999999886555442 1 55566665443
No 341
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=76.83 E-value=14 Score=30.78 Aligned_cols=61 Identities=25% Similarity=0.450 Sum_probs=44.9
Q ss_pred cEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCC
Q 017126 272 KIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 337 (377)
Q Consensus 272 ~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~ 337 (377)
.+++.++.+. -+..+.+-..+.-+|.+|+...|.-+.+.. ...-+.|-+ ..+|++.||...
T Consensus 161 ~i~VhIYEdg-i~gcealn~~~~cLAAeyP~vKFckikss~-~gas~~F~~---n~lP~LliYkgG 221 (273)
T KOG3171|consen 161 TIVVHIYEDG-IKGCEALNSSLTCLAAEYPIVKFCKIKSSN-TGASDRFSL---NVLPTLLIYKGG 221 (273)
T ss_pred EEEEEEecCC-CchHHHHhhhHHHhhccCCceeEEEeeecc-ccchhhhcc---cCCceEEEeeCC
Confidence 3444555543 344556667888899999999999988765 556677766 789999999975
No 342
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=75.70 E-value=22 Score=23.99 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=48.3
Q ss_pred EEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc-chhhHhhcCCCcCCEEEEEeCCeeEeecCCCCHHHHHHH
Q 017126 66 DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-YSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRY 144 (377)
Q Consensus 66 ~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~i~~~ 144 (377)
+++.++|+.|++..-.+. +++. ++.+..++..+ ...+.+...-..+|++. .+|..+. +...|.+|
T Consensus 1 Ly~~~~Sp~~~kv~~~l~-----~~~i--~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l~-----dS~~I~~y 66 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALE-----EKGI--PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVLT-----DSAAIIEY 66 (75)
T ss_dssp EEEETTSHHHHHHHHHHH-----HHTE--EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEEE-----SHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHH-----HcCC--eEEEeccCcccchhHHHhhcccccceEEE--ECCEEEe-----CHHHHHHH
Confidence 467889999988753333 2332 35666666655 35666777778899997 5566442 67888888
Q ss_pred HHhhcCC
Q 017126 145 LKKFVAP 151 (377)
Q Consensus 145 ~~~~~~~ 151 (377)
+.+..+.
T Consensus 67 L~~~~~~ 73 (75)
T PF13417_consen 67 LEERYPG 73 (75)
T ss_dssp HHHHSTS
T ss_pred HHHHcCC
Confidence 8877654
No 343
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=75.38 E-value=17 Score=25.60 Aligned_cols=74 Identities=20% Similarity=0.162 Sum_probs=55.5
Q ss_pred CeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCeeEeecCCC
Q 017126 61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPR 136 (377)
Q Consensus 61 ~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~ 136 (377)
.+++=+|.+..-+.+++....+.++-+.... +.+.+-.||..++|++++.+.|-..||++=-.++-..+..|..
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~--g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~rriiGdl 76 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ--GVYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKIIGDL 76 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC--CceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCcceeeccc
Confidence 3455567777788888888888888665433 2499999999999999999999999998765554333345554
No 344
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=75.08 E-value=21 Score=23.60 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=35.1
Q ss_pred EEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCeeEeecCCCCHHHHHHHH
Q 017126 66 DFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145 (377)
Q Consensus 66 ~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~i~~~~ 145 (377)
+++.++|++|++.+-.+....- .+....++-.......+..+-..+|.+.. .+|..+ .....|.+|+
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl-------~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~l-----~es~aI~~yL 69 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI-------PVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSFM-----AESLDIVAFI 69 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC-------CeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeEe-----ehHHHHHHHH
Confidence 5678899999877554443322 23333444332222333344456888743 334322 2345566655
Q ss_pred H
Q 017126 146 K 146 (377)
Q Consensus 146 ~ 146 (377)
.
T Consensus 70 ~ 70 (71)
T cd03037 70 D 70 (71)
T ss_pred h
Confidence 3
No 345
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=75.07 E-value=2.1 Score=34.97 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=15.7
Q ss_pred hhhHhhcCCCcCCEEEEEeC---CeeEeecCCCCHH
Q 017126 107 SRLASKQEIDAFPTLKIFMH---GIPTEYYGPRKAE 139 (377)
Q Consensus 107 ~~~~~~~~i~~~P~~~~~~~---g~~~~y~g~~~~~ 139 (377)
..++++++|+++||+++|.. +..+...|..+.+
T Consensus 137 ~~la~~m~I~~~Ptlvi~~~~~~~~g~~i~g~~~~~ 172 (176)
T PF13743_consen 137 QQLAREMGITGFPTLVIFNENNEEYGILIEGYYSYE 172 (176)
T ss_dssp HHHHHHTT-SSSSEEEEE------------------
T ss_pred HHHHHHcCCCCCCEEEEEeccccccccccccccccc
Confidence 46899999999999999982 3333345544443
No 346
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=75.03 E-value=12 Score=25.88 Aligned_cols=78 Identities=10% Similarity=0.084 Sum_probs=50.1
Q ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCCCc-eeccCCCCCCcccc
Q 017126 276 AIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNENY-LTVIGSESIDEEDQ 354 (377)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~~~-~~~~~~~~~~~~~t 354 (377)
.++....-.--+.+...|+.++...+ +.+..+|..+.+++...||. ..|.+.+-+..+.. ... ....++
T Consensus 3 ~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~----~IPVl~~~~~~~~~~~~~-----~~~~~d 72 (81)
T PF05768_consen 3 TLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY----RIPVLHIDGIRQFKEQEE-----LKWRFD 72 (81)
T ss_dssp EEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT----STSEEEETT-GGGCTSEE-----EESSB-
T ss_pred EEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC----CCCEEEEcCcccccccce-----eCCCCC
Confidence 34555556666777777877555444 78888999988888888875 47998877742100 111 133467
Q ss_pred hhhHHHHHH
Q 017126 355 GSQISRFLE 363 (377)
Q Consensus 355 ~e~i~~Fi~ 363 (377)
.+.|.+||+
T Consensus 73 ~~~L~~~L~ 81 (81)
T PF05768_consen 73 EEQLRAWLE 81 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 889999885
No 347
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=74.72 E-value=19 Score=23.89 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=32.6
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc-chhhHhhcCCCcCCEEEE
Q 017126 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK-YSRLASKQEIDAFPTLKI 123 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-~~~~~~~~~i~~~P~~~~ 123 (377)
+.|+.++|+.|.+..-.+... +-.+.+..+|..+ .+++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-------gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-------GITVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-------CCCcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 467789999998774443332 2235556666543 345555556678899953
No 348
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=73.82 E-value=6.9 Score=33.72 Aligned_cols=33 Identities=6% Similarity=0.036 Sum_probs=24.7
Q ss_pred CEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHH
Q 017126 44 KVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLA 79 (377)
Q Consensus 44 ~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~ 79 (377)
....++..+ +..++++.+++.-+.||+.|...+
T Consensus 45 ~~~kvsn~d---~~~~Gk~~v~~igw~gCP~~A~~s 77 (249)
T PF06053_consen 45 NFFKVSNQD---LAPNGKPEVIFIGWEGCPYCAAES 77 (249)
T ss_pred ceeeecCcc---cCCCCeeEEEEEecccCccchhhH
Confidence 556666544 346789999999999999995543
No 349
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=73.76 E-value=18 Score=26.99 Aligned_cols=43 Identities=9% Similarity=-0.005 Sum_probs=28.3
Q ss_pred CCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCC--CcEEEEEecc
Q 017126 269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIK 311 (377)
Q Consensus 269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~f~~vd~~ 311 (377)
.+++.++.|+.....+.....+..|.++..+++ ++.++.+..+
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d 68 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD 68 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc
Confidence 447888888766456666666677777777655 3666666554
No 350
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=73.36 E-value=32 Score=26.21 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=17.4
Q ss_pred hHHhhcCCCCCCCCCeEEEEeCCCCc
Q 017126 315 DFADTFEANKKSKLPKMVVWDGNENY 340 (377)
Q Consensus 315 ~~~~~~gi~~~~~~P~l~i~~~~~~~ 340 (377)
.+.+.||+ ...|++++++.+++-
T Consensus 90 ~~~~~~~v---~~iPt~~lid~~G~i 112 (132)
T cd02964 90 LLEKQFKV---EGIPTLVVLKPDGDV 112 (132)
T ss_pred HHHHHcCC---CCCCEEEEECCCCCE
Confidence 34556888 778999999987654
No 351
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=73.30 E-value=3.7 Score=30.27 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=14.5
Q ss_pred EEEECCCChhHhhHHHHHH
Q 017126 65 VDFYAPWCGHCKRLAPQLD 83 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~~ 83 (377)
..|+.|+|+.|++....++
T Consensus 2 ~iy~~~~C~~crka~~~L~ 20 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLE 20 (105)
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 5688999999988755443
No 352
>PRK09301 circadian clock protein KaiB; Provisional
Probab=73.20 E-value=19 Score=26.21 Aligned_cols=75 Identities=23% Similarity=0.170 Sum_probs=57.3
Q ss_pred CeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCeeEeecCCCC
Q 017126 61 DYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRK 137 (377)
Q Consensus 61 ~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~ 137 (377)
.+++=+|.+..-+.+++....+.++-+.... ..+.+-.||..++|++++.+.|-..||++=-.++-..+..|..+
T Consensus 6 ~~~LrLyVag~tp~S~~ai~nL~~icE~~l~--g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~rriiGDls 80 (103)
T PRK09301 6 TYILKLYVAGNTPNSVRALKTLKNILETEFK--GVYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVRKIIGDLS 80 (103)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC--CceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcceeecccc
Confidence 5667777788888888888888888665433 24999999999999999999999999987555443334556543
No 353
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=71.77 E-value=7.4 Score=29.24 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=23.4
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcch
Q 017126 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS 107 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~ 107 (377)
..|+.++|+.|++....+++- ++.+-.+|..+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN---------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc---------CCceEEEecCCCh
Confidence 367899999999887665551 2566667765543
No 354
>PHA02125 thioredoxin-like protein
Probab=71.64 E-value=24 Score=23.88 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=32.0
Q ss_pred CChHHHHHHHHHHHHHHHhCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEE
Q 017126 281 ETEEKSQKLVTTLKAAASANRELVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (377)
Q Consensus 281 ~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~ 332 (377)
......+.....|++++ +.++-+|.+...++++.+++ ...|+++
T Consensus 8 ~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v---~~~PT~~ 51 (75)
T PHA02125 8 EWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHI---RSLPTLV 51 (75)
T ss_pred CCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCC---ceeCeEE
Confidence 34444455556666543 35778888888999999999 7899987
No 355
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=71.16 E-value=32 Score=36.84 Aligned_cols=90 Identities=10% Similarity=0.114 Sum_probs=60.1
Q ss_pred CCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCC--cEEEEEe-----cc----------------------chhhHHhh
Q 017126 269 DKRKIVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVG-----IK----------------------QFADFADT 319 (377)
Q Consensus 269 ~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd-----~~----------------------~~~~~~~~ 319 (377)
.++++++-|.. +-..........|++++++|++ +.++-+. .. ...++.+.
T Consensus 419 kGK~vll~FWA-sWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWT-YCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEEC-CcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 35677777765 3345556777888888888875 5555442 21 12345567
Q ss_pred cCCCCCCCCCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHhc
Q 017126 320 FEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 367 (377)
Q Consensus 320 ~gi~~~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~ 367 (377)
|++ ...|+.++++.+++.... +.++...+.+.++++..+.
T Consensus 498 ~~V---~~iPt~ilid~~G~iv~~-----~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGV---SSWPTFAVVSPNGKLIAQ-----LSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCC---CccceEEEECCCCeEEEE-----EecccCHHHHHHHHHHHHH
Confidence 777 789999999988755432 2566678889999888644
No 356
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=70.39 E-value=18 Score=24.54 Aligned_cols=58 Identities=14% Similarity=0.071 Sum_probs=40.8
Q ss_pred EEEEeCCChHHHHHHHHHHHHHHHhCCC--cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeC
Q 017126 275 LAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (377)
Q Consensus 275 i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~ 336 (377)
.+|.. ..+.........++++.+++.+ +.+-.+|..++++.+....+ ...|+++=..+
T Consensus 5 ~Lyv~-g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~i---vAtPtLvk~~P 64 (72)
T cd02978 5 RLYVA-GRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKI---VATPTLVKVLP 64 (72)
T ss_pred EEEEC-CCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCE---EEechhhhcCC
Confidence 34443 3445555666777777777654 88888999999999999988 66687664443
No 357
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=69.86 E-value=63 Score=27.98 Aligned_cols=84 Identities=20% Similarity=0.313 Sum_probs=45.5
Q ss_pred HHHHHHHccCCcccEEEeecCChHHHHHHHHHhhhhhHHHHhhcchhhhhhhcCCCCCCeEEEEcCCCCCcccccC-CCC
Q 017126 161 EVSDFVENAGTFFPLFIGFGLDESVMSNLALKYKKKAWFAVAKDFSEDTMVLYDFDKVPALVALQPSYNEHNIFYG-PFD 239 (377)
Q Consensus 161 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~g-~~~ 239 (377)
.+.++++... |.+++++-+.+..++++.+|+-... -. .++.-+.|=|++.-...++.++ ++...|.| +.+
T Consensus 193 ~~~eY~~eF~---pkllGLTGT~eqvk~vak~yRVYfs--~g---p~d~~~DYlVDHSi~mYLidPe-g~Fvd~~GrN~~ 263 (280)
T KOG2792|consen 193 VVAEYVSEFH---PKLLGLTGTTEQVKQVAKKYRVYFS--TG---PKDEDQDYLVDHSIFMYLIDPE-GEFVDYYGRNYD 263 (280)
T ss_pred HHHHHHHhcC---hhhhcccCCHHHHHHHHHHhEEeec--cC---CCCCCCCeeeeeeEEEEEECCC-cceehhhcccCC
Confidence 3444444433 4667777777778888887753221 10 1222445666642223333443 44455554 578
Q ss_pred HHHHHHHHHhhCCC
Q 017126 240 EEFLEEFIKQNFLP 253 (377)
Q Consensus 240 ~~~l~~fi~~~~~p 253 (377)
.+++.+=|.++..+
T Consensus 264 ~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 264 ADELADSILKHVAS 277 (280)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888887766433
No 358
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=69.09 E-value=31 Score=28.25 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=23.8
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHh
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPIL 89 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~ 89 (377)
+.+|+.+.|+.|-...+.+.++.+.+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~ 28 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEY 28 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHh
Confidence 56888999999999999999999887
No 359
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=68.60 E-value=37 Score=26.95 Aligned_cols=80 Identities=14% Similarity=0.278 Sum_probs=47.8
Q ss_pred CCCcccccCh---hhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEecc--chhhHHhhcCCCCC
Q 017126 251 FLPLSVPINQ---DTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIK--QFADFADTFEANKK 325 (377)
Q Consensus 251 ~~p~~~~l~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~--~~~~~~~~~gi~~~ 325 (377)
.-|+.+.+|+ +.++.+..+..++-++|++.+.+.. ++..-+ ..+++ .+.++--. .-.++...|++
T Consensus 44 wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~--~~~~y~----~~~~~-~W~~iPf~d~~~~~l~~ky~v--- 113 (157)
T KOG2501|consen 44 WCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEE--SLDEYM----LEHHG-DWLAIPFGDDLIQKLSEKYEV--- 113 (157)
T ss_pred ECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHH--HHHHHH----HhcCC-CeEEecCCCHHHHHHHHhccc---
Confidence 3456666666 4456677777889998886443322 222222 22221 23333211 23678888988
Q ss_pred CCCCeEEEEeCCCCc
Q 017126 326 SKLPKMVVWDGNENY 340 (377)
Q Consensus 326 ~~~P~l~i~~~~~~~ 340 (377)
...|+++++++++.-
T Consensus 114 ~~iP~l~i~~~dG~~ 128 (157)
T KOG2501|consen 114 KGIPALVILKPDGTV 128 (157)
T ss_pred CcCceeEEecCCCCE
Confidence 889999999997643
No 360
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.38 E-value=24 Score=25.52 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=42.7
Q ss_pred hhHHHHHcCCCeEEEEEEC---CCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCC-CcCCEEE-EEe
Q 017126 51 SNFDSAISSFDYILVDFYA---PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEI-DAFPTLK-IFM 125 (377)
Q Consensus 51 ~~f~~~~~~~~~~~v~f~~---~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i-~~~P~~~-~~~ 125 (377)
+-.++.+++++.++.+=-+ |-|+.+.+.. ++-... +. +.|+.||.-.++++.+.+.- ...||+- +|-
T Consensus 6 ~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~v----qiL~~~---g~-v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi 77 (105)
T COG0278 6 DRIQKQIKENPVVLFMKGTPEFPQCGFSAQAV----QILSAC---GV-VDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYV 77 (105)
T ss_pred HHHHHHhhcCceEEEecCCCCCCCCCccHHHH----HHHHHc---CC-cceeEEeeccCHHHHhccHhhcCCCCCceeeE
Confidence 3456667665554444334 4566655443 332222 22 77899999999999776543 4566665 566
Q ss_pred CCeeE
Q 017126 126 HGIPT 130 (377)
Q Consensus 126 ~g~~~ 130 (377)
+|+.+
T Consensus 78 ~GEfv 82 (105)
T COG0278 78 NGEFV 82 (105)
T ss_pred CCEEe
Confidence 77554
No 361
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=67.93 E-value=5.6 Score=29.59 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=22.3
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc
Q 017126 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~ 106 (377)
..|+.++|+.|++....+++- ++.+-.+|..++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH---------GVDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc---------CCceEEecccCC
Confidence 467899999998876555441 156666776544
No 362
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=67.89 E-value=21 Score=22.81 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=30.4
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchh--hHhhcCCCcCCEEEE
Q 017126 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSR--LASKQEIDAFPTLKI 123 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~--~~~~~~i~~~P~~~~ 123 (377)
..|+.++|+.|++..-.+....- .+....++-..... +-+..+-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i-------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL-------PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC-------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 35778899999877655554421 24444454433222 344456667898764
No 363
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=66.68 E-value=53 Score=25.27 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=16.4
Q ss_pred hhHHhhcCCCC---CCCCCeEEEEeCCCCc
Q 017126 314 ADFADTFEANK---KSKLPKMVVWDGNENY 340 (377)
Q Consensus 314 ~~~~~~~gi~~---~~~~P~l~i~~~~~~~ 340 (377)
..+.+.||+.. +...|+..+++.+++.
T Consensus 93 ~~~~~~~gv~~~~~~~~~~~~~iid~~G~I 122 (143)
T cd03014 93 HSFGKAYGVLIKDLGLLARAVFVIDENGKV 122 (143)
T ss_pred cHHHHHhCCeeccCCccceEEEEEcCCCeE
Confidence 45666777621 1125788888887643
No 364
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=66.15 E-value=7.6 Score=29.93 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=21.8
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~ 106 (377)
+..|+.++|+.|++....+++- + +.+-.+|..++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-------g--i~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-------D--IPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-------C--CCcEEeeccCC
Confidence 4567899999998875444332 2 55666665444
No 365
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=65.64 E-value=11 Score=31.02 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=29.2
Q ss_pred chhhHhhcCCCcCCEEEEEeCCeeEeecCCCCHHHHHHHH
Q 017126 106 YSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145 (377)
Q Consensus 106 ~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~i~~~~ 145 (377)
+...+.++||.|+|++++ +|+ ..+.|....+.+.+.+
T Consensus 156 ~~~~a~~~gv~GvP~~vv--~g~-~~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 156 DTAEARQLGVFGVPTFVV--NGK-YRFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHHTTCSSSSEEEE--TTT-EEEESCSSHHHHHHHH
T ss_pred HHHHHHHcCCcccCEEEE--CCE-EEEECCCCHHHHHHHh
Confidence 456778899999999999 666 4568888888777655
No 366
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=64.86 E-value=12 Score=29.77 Aligned_cols=49 Identities=24% Similarity=0.393 Sum_probs=28.9
Q ss_pred CccccccCCCCCEEEeChhhHHHHHcCCCeEEEEEE----CCCC--hhHhhHHHHHHHHHHH
Q 017126 33 SEEETKFKIDGKVIELDESNFDSAISSFDYILVDFY----APWC--GHCKRLAPQLDEAAPI 88 (377)
Q Consensus 33 ~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~v~f~----~~~C--~~C~~~~~~~~~~a~~ 88 (377)
+|..++.++++..+.|.. +..+++++++|| +|.| ..| .|+..|.++...
T Consensus 69 iPD~tL~dedg~sisLkk------it~nk~vV~f~YP~asTPGCTkQaC-gFRDnY~k~kka 123 (211)
T KOG0855|consen 69 IPDFTLKDEDGKSISLKK------ITGNKPVVLFFYPAASTPGCTKQAC-GFRDNYEKFKKA 123 (211)
T ss_pred CCCcccccCCCCeeeeee------ecCCCcEEEEEeccCCCCCcccccc-cccccHHHHhhc
Confidence 344444555555555432 245578899999 4666 345 677777766653
No 367
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=64.52 E-value=14 Score=30.37 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=32.5
Q ss_pred hhhHhhcCCCcCCEEEEEeCCeeEee-cC--CCCHHHHHHHHHhh
Q 017126 107 SRLASKQEIDAFPTLKIFMHGIPTEY-YG--PRKAELLVRYLKKF 148 (377)
Q Consensus 107 ~~~~~~~~i~~~P~~~~~~~g~~~~y-~g--~~~~~~i~~~~~~~ 148 (377)
..+|+++++.++||+.+-++|+.... .| ..+.+.+..++.+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~ 208 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQR 208 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHH
Confidence 45899999999999999999986642 44 34667777777654
No 368
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=63.76 E-value=12 Score=24.96 Aligned_cols=69 Identities=22% Similarity=0.255 Sum_probs=40.1
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc-hhhHhhcCCCcCCEEEEEeCCeeEeecCCCCHHHHHH
Q 017126 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVR 143 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~i~~ 143 (377)
..++.++|+.|++..-.+... +-++....+|..+. +++.+......+|++. .+|..+ .....|.+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~-------gi~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~l-----~es~aI~~ 67 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEK-------GVSVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLVL-----YESRIIME 67 (73)
T ss_pred EEEECCCChhHHHHHHHHHHc-------CCccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEEE-----EcHHHHHH
Confidence 467889999998875554332 22244445554433 4555555566889774 344322 34566777
Q ss_pred HHHh
Q 017126 144 YLKK 147 (377)
Q Consensus 144 ~~~~ 147 (377)
|+.+
T Consensus 68 yL~~ 71 (73)
T cd03059 68 YLDE 71 (73)
T ss_pred HHHh
Confidence 7654
No 369
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=63.64 E-value=4.3 Score=28.31 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=43.7
Q ss_pred EECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEE
Q 017126 67 FYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKI 123 (377)
Q Consensus 67 f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~ 123 (377)
|-+..-+.++........+.+..- +..+.+-.||..++|++++.++|-..||++-
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l--~~~~~LeVIDv~~~P~lAe~~~ivAtPtLik 57 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYL--GGRYELEVIDVLEQPELAEEDRIVATPTLIK 57 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHC--TTTEEEEEEETTTSHSHHTTTEEECHHHHHT
T ss_pred EECCCChHHHHHHHHHHHHHHhhC--CCcEEEEEEEcccCHhHHhHCCeeecceEee
Confidence 445555667788888888877643 3469999999999999999999999998753
No 370
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=63.13 E-value=84 Score=25.81 Aligned_cols=48 Identities=25% Similarity=0.395 Sum_probs=33.7
Q ss_pred hhHHhhcCCCCCCCCCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHhcCcc
Q 017126 314 ADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREGRT 370 (377)
Q Consensus 314 ~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~Gkl 370 (377)
.++.+.||+ ...|+.++++.+++.... +. . -+.+.+++.++....|..
T Consensus 136 ~~i~~~y~v---~~~P~~~lID~~G~I~~~-g~--~---~~~~~le~ll~~l~~~~~ 183 (189)
T TIGR02661 136 AEIGMAFQV---GKIPYGVLLDQDGKIRAK-GL--T---NTREHLESLLEADREGFA 183 (189)
T ss_pred hHHHHhccC---CccceEEEECCCCeEEEc-cC--C---CCHHHHHHHHHHHHcCcc
Confidence 456677887 678999999998765432 21 1 256789999988877753
No 371
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=62.06 E-value=12 Score=25.67 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=12.5
Q ss_pred CchhHHHHHHHHHHHHHhhhhhhhcC
Q 017126 4 MSKGRIWILLCLLLLTGRGMMLLTGR 29 (377)
Q Consensus 4 m~~~~~~~~~~~~~l~~~~~~~~~~~ 29 (377)
|.+ |+|++-++++.++.+++..+.+
T Consensus 1 MaR-RlwiLslLAVtLtVALAAPsQK 25 (100)
T PF05984_consen 1 MAR-RLWILSLLAVTLTVALAAPSQK 25 (100)
T ss_pred Cch-hhHHHHHHHHHHHHHhhccccc
Confidence 455 5555555555544444444433
No 372
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=62.02 E-value=88 Score=25.65 Aligned_cols=86 Identities=9% Similarity=0.025 Sum_probs=54.5
Q ss_pred EEEEEeCCChHHHHHHHHHHHHHHHhCCC-cEEEEEeccc---h--------hhHHhhcCCCCCCCCCeEEEEeCCCCce
Q 017126 274 VLAIVEDETEEKSQKLVTTLKAAASANRE-LVFCYVGIKQ---F--------ADFADTFEANKKSKLPKMVVWDGNENYL 341 (377)
Q Consensus 274 ~i~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~f~~vd~~~---~--------~~~~~~~gi~~~~~~P~l~i~~~~~~~~ 341 (377)
++.|+. +..+-.++....|+++++++.- +.-+.+|+.. + ......||. .....|+.++++.+++..
T Consensus 73 lV~Fwa-swCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~-~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQ-GHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPN-IPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEEC-CCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCC-CCCCCCeEEEEeCCCcEE
Confidence 444554 4567777888899999998853 2222334331 1 224456764 236899999999987643
Q ss_pred --eccCCCCCCcccchhhHHHHHHHHhc
Q 017126 342 --TVIGSESIDEEDQGSQISRFLEGYRE 367 (377)
Q Consensus 342 --~~~~~~~~~~~~t~e~i~~Fi~~~~~ 367 (377)
.. .|.++.+++.+-++..++
T Consensus 151 ~~~~------~G~~~~~~L~~~I~~ll~ 172 (181)
T PRK13728 151 LPLL------QGATDAAGFMARMDTVLQ 172 (181)
T ss_pred EEEE------ECCCCHHHHHHHHHHHHh
Confidence 34 456677788887777654
No 373
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=61.86 E-value=66 Score=24.18 Aligned_cols=86 Identities=7% Similarity=0.079 Sum_probs=50.4
Q ss_pred cEEEEEEeCCChHHHHHHHHHHHHHHHhCC--CcEEEE-Eeccchh-----------hHHhhcCCCCCCCCCeEEEEeCC
Q 017126 272 KIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCY-VGIKQFA-----------DFADTFEANKKSKLPKMVVWDGN 337 (377)
Q Consensus 272 ~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~f~~-vd~~~~~-----------~~~~~~gi~~~~~~P~l~i~~~~ 337 (377)
..+++|.++.++..+....+.|.+...... ++.+.. ++..... .+.+.|++ . .+.-.++++..+
T Consensus 11 R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~-~-~~~f~~vLiGKD 88 (118)
T PF13778_consen 11 RLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRI-P-PGGFTVVLIGKD 88 (118)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCC-C-CCceEEEEEeCC
Confidence 344445555566666777777777444444 344444 3333333 67788988 3 445667777776
Q ss_pred CCceeccCCCCCCcccchhhHHHHHHH
Q 017126 338 ENYLTVIGSESIDEEDQGSQISRFLEG 364 (377)
Q Consensus 338 ~~~~~~~~~~~~~~~~t~e~i~~Fi~~ 364 (377)
|.-+.-. ...++.+.|-..|+.
T Consensus 89 G~vK~r~-----~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 89 GGVKLRW-----PEPIDPEELFDTIDA 110 (118)
T ss_pred CcEEEec-----CCCCCHHHHHHHHhC
Confidence 5443321 445667888887765
No 374
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=61.57 E-value=51 Score=22.79 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=38.7
Q ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccch----hhHHhhcCCCCCCCCCeEEE
Q 017126 276 AIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQF----ADFADTFEANKKSKLPKMVV 333 (377)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~----~~~~~~~gi~~~~~~P~l~i 333 (377)
.++.....+...+..+.|+.++.++.++.+..+|.... .++....|. .....|++++
T Consensus 4 ~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~-~~~~vP~ifi 64 (85)
T PRK11200 4 VIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGK-PVETVPQIFV 64 (85)
T ss_pred EEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCC-CCCcCCEEEE
Confidence 44555667777888899999888776788888877653 234444443 2257899874
No 375
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=61.46 E-value=17 Score=24.05 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=31.8
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC----cchhhHhhcCCCcCCEEEE
Q 017126 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----KYSRLASKQEIDAFPTLKI 123 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----~~~~~~~~~~i~~~P~~~~ 123 (377)
.+|+.++|+.|++..-.+....- .+....++.. ..+++.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l-------~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI-------DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC-------CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 46778999999887665544422 2334455542 2344555555667899975
No 376
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=61.32 E-value=34 Score=25.02 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=10.3
Q ss_pred HhhcCCCCCCCCCeEEEEeCCCC
Q 017126 317 ADTFEANKKSKLPKMVVWDGNEN 339 (377)
Q Consensus 317 ~~~~gi~~~~~~P~l~i~~~~~~ 339 (377)
.+.||+ ...|+.++++.+++
T Consensus 88 ~~~~~~---~~~P~~~vid~~G~ 107 (114)
T cd02967 88 GMAYQV---SKLPYAVLLDEAGV 107 (114)
T ss_pred HhhcCC---CCcCeEEEECCCCe
Confidence 344444 34566666665543
No 377
>PRK12559 transcriptional regulator Spx; Provisional
Probab=60.82 E-value=11 Score=29.05 Aligned_cols=19 Identities=21% Similarity=0.539 Sum_probs=14.4
Q ss_pred EEEEECCCChhHhhHHHHH
Q 017126 64 LVDFYAPWCGHCKRLAPQL 82 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~ 82 (377)
+..|+.|+|+.|++...-+
T Consensus 2 i~iY~~~~C~~crkA~~~L 20 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWL 20 (131)
T ss_pred EEEEeCCCChHHHHHHHHH
Confidence 4578899999998865433
No 378
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=60.64 E-value=69 Score=23.99 Aligned_cols=59 Identities=8% Similarity=0.031 Sum_probs=38.2
Q ss_pred cEEEEEeccc--hhhHHhhcCCCCCCCCCeEEEEeCC-CCceeccCCCCCCcccchhhHHHHHHHHhc
Q 017126 303 LVFCYVGIKQ--FADFADTFEANKKSKLPKMVVWDGN-ENYLTVIGSESIDEEDQGSQISRFLEGYRE 367 (377)
Q Consensus 303 ~~f~~vd~~~--~~~~~~~~gi~~~~~~P~l~i~~~~-~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~ 367 (377)
+.+.-.|.+. -.++++.+++ ..+|.++++.+. ++...... +.|.++.+++..-++.+.+
T Consensus 53 fv~w~~dv~~~eg~~la~~l~~---~~~P~~~~l~~~~~~~~vv~~---i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 53 MLFWACSVAKPEGYRVSQALRE---RTYPFLAMIMLKDNRMTIVGR---LEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEEEEecCChHHHHHHHHhCC---CCCCEEEEEEecCCceEEEEE---EeCCCCHHHHHHHHHHHHh
Confidence 4444456653 3557788888 789999999774 33322111 3667788888887776654
No 379
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=58.82 E-value=56 Score=22.38 Aligned_cols=69 Identities=14% Similarity=0.165 Sum_probs=38.3
Q ss_pred HHhhhcCCCcEEEEEEeCCChHHHHHHHHHH---HHHHH-hCCCcEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeC
Q 017126 263 LNLLKDDKRKIVLAIVEDETEEKSQKLVTTL---KAAAS-ANRELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDG 336 (377)
Q Consensus 263 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l---~~~a~-~~~~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~ 336 (377)
+......++|+++.|.. .-....+.+.+.+ ..+.. -.+++.++.+|.++........+ ...|+++++++
T Consensus 10 l~~A~~~~kpvlv~f~a-~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~----~~~P~~~~ldp 82 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGA-DWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR----QGYPTFFFLDP 82 (82)
T ss_dssp HHHHHHHTSEEEEEEET-TTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH----CSSSEEEEEET
T ss_pred HHHHHHcCCCEEEEEEC-CCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC----ccCCEEEEeCC
Confidence 34455667888888863 3333333333222 12222 12347888999876544333222 33799999975
No 380
>PRK13617 psbV cytochrome c-550; Provisional
Probab=57.99 E-value=4.9 Score=32.23 Aligned_cols=31 Identities=23% Similarity=0.517 Sum_probs=20.5
Q ss_pred CCCCCEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhH
Q 017126 40 KIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRL 78 (377)
Q Consensus 40 ~~~~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~ 78 (377)
+..+..+.++.+++..= +-+ | ...|..|+..
T Consensus 46 ~~~g~~~~~s~~~~~~G----~~~---F-~~~C~~CH~~ 76 (170)
T PRK13617 46 DPSGSQVTFSESEIKAG----RKV---F-NTSCGTCHAG 76 (170)
T ss_pred CCCCCeEEeCHHHHHHH----HHH---H-HcchhhhccC
Confidence 44578888888877542 222 2 7789999744
No 381
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=57.78 E-value=44 Score=22.13 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=31.9
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc----chhhHhhcCCCcCCEEEE
Q 017126 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----YSRLASKQEIDAFPTLKI 123 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----~~~~~~~~~i~~~P~~~~ 123 (377)
..|+.++|+.|++..-.+.... -++....++..+ .+++.+...-..+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~g-------i~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALG-------LELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcC-------CCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEE
Confidence 4678899999986654444332 224445555422 255666656668999963
No 382
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=57.21 E-value=67 Score=26.86 Aligned_cols=69 Identities=19% Similarity=0.287 Sum_probs=47.0
Q ss_pred CChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEEeCCeeEeecCCCCHHHHHHHHHhhcC
Q 017126 71 WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVA 150 (377)
Q Consensus 71 ~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~i~~~~~~~~~ 150 (377)
.|+.|+++.-.+. .+ +..+.+-.||...-++..++..-.+-|=++.|.+ .+..+.+.|.+++.+.++
T Consensus 20 dcpf~qr~~m~L~-----~k--~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~~d~------~~~tDs~~Ie~~Lee~l~ 86 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE-----LK--GVPFKVTTVDLSRKPEWFLDISPGGKPPVLKFDE------KWVTDSDKIEEFLEEKLP 86 (221)
T ss_pred CChhHHHHHHHHH-----Hc--CCCceEEEeecCCCcHHHHhhCCCCCCCeEEeCC------ceeccHHHHHHHHHHhcC
Confidence 5888888755444 22 2358999999999888877766555444444443 234567889999988887
Q ss_pred CC
Q 017126 151 PD 152 (377)
Q Consensus 151 ~~ 152 (377)
++
T Consensus 87 ~p 88 (221)
T KOG1422|consen 87 PP 88 (221)
T ss_pred CC
Confidence 65
No 383
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=57.04 E-value=1e+02 Score=24.79 Aligned_cols=93 Identities=13% Similarity=0.114 Sum_probs=48.2
Q ss_pred HHHHHHhhCCCccc--ccChhhHHhhhcCCCcEEEEEEeCCChHHHHHHHHHHH--HHHHhCC-CcEEEEEeccchhhHH
Q 017126 243 LEEFIKQNFLPLSV--PINQDTLNLLKDDKRKIVLAIVEDETEEKSQKLVTTLK--AAASANR-ELVFCYVGIKQFADFA 317 (377)
Q Consensus 243 l~~fi~~~~~p~~~--~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~--~~a~~~~-~~~f~~vd~~~~~~~~ 317 (377)
-.-++++|....|. ..+.+.++.....++|+++.+....-.--.....+.++ ++|.... ++.-+.+|.++.+++-
T Consensus 8 ~Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid 87 (163)
T PF03190_consen 8 KSPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDID 87 (163)
T ss_dssp --HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHH
T ss_pred CCHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHH
Confidence 44677777666554 55567788887788898888875332111100111111 1222221 1556778999888876
Q ss_pred hhc--------CCCCCCCCCeEEEEeCCC
Q 017126 318 DTF--------EANKKSKLPKMVVWDGNE 338 (377)
Q Consensus 318 ~~~--------gi~~~~~~P~l~i~~~~~ 338 (377)
..+ |. .++|+-+++.+++
T Consensus 88 ~~y~~~~~~~~~~---gGwPl~vfltPdg 113 (163)
T PF03190_consen 88 KIYMNAVQAMSGS---GGWPLTVFLTPDG 113 (163)
T ss_dssp HHHHHHHHHHHS------SSEEEEE-TTS
T ss_pred HHHHHHHHHhcCC---CCCCceEEECCCC
Confidence 665 44 7899999999975
No 384
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=56.98 E-value=14 Score=27.60 Aligned_cols=34 Identities=21% Similarity=0.405 Sum_probs=21.7
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~ 106 (377)
+..|+.++|+.|++....+++. + +.+-.+|..++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----g----i~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----Q----IPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----C----CceEEEecCCC
Confidence 3467789999998876555542 1 55555665433
No 385
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=56.91 E-value=19 Score=30.56 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=31.5
Q ss_pred hhHhhcCCCcCCEEEEEeCCeeEeecCCCCHHHHHHHHHhhcCC
Q 017126 108 RLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVAP 151 (377)
Q Consensus 108 ~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~i~~~~~~~~~~ 151 (377)
..+++.||+++|++++ ...+.-.|..+.+.+..-+.+.+..
T Consensus 175 ~~A~e~gI~gVP~fv~---d~~~~V~Gaq~~~v~~~al~~~~~~ 215 (225)
T COG2761 175 AAAQEMGIRGVPTFVF---DGKYAVSGAQPYDVLEDALRQLLAE 215 (225)
T ss_pred HHHHHCCCccCceEEE---cCcEeecCCCCHHHHHHHHHHHHhc
Confidence 4678899999999999 2233457889888888888777654
No 386
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.49 E-value=78 Score=28.96 Aligned_cols=94 Identities=16% Similarity=0.263 Sum_probs=63.4
Q ss_pred EEeChhhHHHHH-cCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcCCEEEEE
Q 017126 46 IELDESNFDSAI-SSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAFPTLKIF 124 (377)
Q Consensus 46 ~~l~~~~f~~~~-~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~P~~~~~ 124 (377)
..++++-.+++- -++.+-|=.|++-.|..|-.. .++-+.+.-.++++.-..+|..-..+-.+.-+|..+|++++
T Consensus 101 pk~~q~vieqik~i~g~~~FETy~SltC~nCPDV----VQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl- 175 (520)
T COG3634 101 PKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDV----VQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL- 175 (520)
T ss_pred CchhHHHHHHHHhcCCceeEEEEEEeeccCChHH----HHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE-
Confidence 334445455543 255778888889999999554 44444444446678888999887777788889999999866
Q ss_pred eCCeeEeecCCCCHHHHHHHHH
Q 017126 125 MHGIPTEYYGPRKAELLVRYLK 146 (377)
Q Consensus 125 ~~g~~~~y~g~~~~~~i~~~~~ 146 (377)
+|+... .|..+.++|..-+.
T Consensus 176 -nGe~fg-~GRmtleeilaki~ 195 (520)
T COG3634 176 -NGEEFG-QGRMTLEEILAKID 195 (520)
T ss_pred -cchhhc-ccceeHHHHHHHhc
Confidence 443221 56677777766553
No 387
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=53.26 E-value=17 Score=28.04 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=20.9
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY 106 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~ 106 (377)
+..|+.|+|+.|++...-+++ . ++.+-.+|..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~--~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA-------H--QLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------c--CCCeEEEECCCC
Confidence 346788999999886533332 2 255666665433
No 388
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=52.21 E-value=76 Score=24.41 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=31.0
Q ss_pred chhhhhhhcCCCCCCeEEEEcCCC----------CCcccccCCCCHHHHHHHHH
Q 017126 205 FSEDTMVLYDFDKVPALVALQPSY----------NEHNIFYGPFDEEFLEEFIK 248 (377)
Q Consensus 205 ~~~~~~~~~~v~~~P~l~~~~~~~----------~~~~~~~g~~~~~~l~~fi~ 248 (377)
.+..+.++|+|+..|++|+.+... .......|+.+.+.-.+.+.
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia 112 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMA 112 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHH
Confidence 578999999999999999998642 12334557777655444444
No 389
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=51.27 E-value=2.5e+02 Score=27.68 Aligned_cols=78 Identities=13% Similarity=0.055 Sum_probs=51.1
Q ss_pred CCCEEEeChhhHHHHHcCCCeEEEEEECCCC-h-hHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhh--------Hh
Q 017126 42 DGKVIELDESNFDSAISSFDYILVDFYAPWC-G-HCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRL--------AS 111 (377)
Q Consensus 42 ~~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C-~-~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~--------~~ 111 (377)
++.+..|++.+-+-+-+=.+++-|.+|.+.- + .-..+....+++-++++..++++.+-.+|-..+++. +.
T Consensus 29 ~~k~ytLS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~~e~~~~~~~~~ 108 (552)
T TIGR03521 29 EDKRYTLSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEEDEQGEEILDSLA 108 (552)
T ss_pred CCCceecCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcchhhhhHHHHHHH
Confidence 4688888887765544445677776664432 1 234556667777777766666799999998776443 33
Q ss_pred hcCCCcCC
Q 017126 112 KQEIDAFP 119 (377)
Q Consensus 112 ~~~i~~~P 119 (377)
++||...+
T Consensus 109 ~~gi~~~~ 116 (552)
T TIGR03521 109 QYGIKPAN 116 (552)
T ss_pred HcCCCcce
Confidence 47887655
No 390
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=50.44 E-value=1.4e+02 Score=24.53 Aligned_cols=69 Identities=13% Similarity=0.220 Sum_probs=39.9
Q ss_pred CcEEEEEeccchhhHHhhcCCC-CCCCC--CeEEEEeCCCCceec-cCCCCCCcccchhhHHHHHHHHhc-----Ccccc
Q 017126 302 ELVFCYVGIKQFADFADTFEAN-KKSKL--PKMVVWDGNENYLTV-IGSESIDEEDQGSQISRFLEGYRE-----GRTEQ 372 (377)
Q Consensus 302 ~~~f~~vd~~~~~~~~~~~gi~-~~~~~--P~l~i~~~~~~~~~~-~~~~~~~~~~t~e~i~~Fi~~~~~-----Gkl~~ 372 (377)
++.|-.+- +....+++.||+- ...+. |+..|++.+++..+. .... ....+.+++-+.|+...- |.+.|
T Consensus 91 ~l~fplls-D~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~--~~~~~~~eil~~l~alq~~~~~~g~~~p 167 (187)
T PRK10382 91 KIKYAMIG-DPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAE--GIGRDASDLLRKIKAAQYVASHPGEVCP 167 (187)
T ss_pred CCceeEEE-cCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCC--CCCCCHHHHHHHHHhhhhHhhcCCeEeC
Confidence 34444431 2347888999972 11234 999999998643222 1111 222367788888877553 66665
Q ss_pred c
Q 017126 373 K 373 (377)
Q Consensus 373 ~ 373 (377)
.
T Consensus 168 ~ 168 (187)
T PRK10382 168 A 168 (187)
T ss_pred C
Confidence 4
No 391
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=49.94 E-value=1.2e+02 Score=23.53 Aligned_cols=88 Identities=15% Similarity=0.127 Sum_probs=56.6
Q ss_pred HcCCCeEEEEEECCCC----hhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcch------------------hhHhhcC
Q 017126 57 ISSFDYILVDFYAPWC----GHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYS------------------RLASKQE 114 (377)
Q Consensus 57 ~~~~~~~~v~f~~~~C----~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~------------------~~~~~~~ 114 (377)
-++.|+.+|+.++|.- ..|+...-. +.+.+-++. ++.+..-|.+... ...+.++
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~s-e~Vi~fl~~---nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~ 93 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCA-ESIVQYLSQ---NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIK 93 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcC-HHHHHHHHc---CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcC
Confidence 3456899999998865 334443211 123333332 3888888876542 2456678
Q ss_pred CCcCCEEEEEeCC----eeEe-ecCCCCHHHHHHHHHhh
Q 017126 115 IDAFPTLKIFMHG----IPTE-YYGPRKAELLVRYLKKF 148 (377)
Q Consensus 115 i~~~P~~~~~~~g----~~~~-y~g~~~~~~i~~~~~~~ 148 (377)
...+|.+.+.... ..+. ..|..+++++++-+...
T Consensus 94 ~~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~ 132 (136)
T cd02990 94 TDQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEA 132 (136)
T ss_pred cCCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHH
Confidence 9999999988532 2333 79999999998877654
No 392
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=49.81 E-value=1e+02 Score=22.73 Aligned_cols=88 Identities=18% Similarity=0.125 Sum_probs=66.2
Q ss_pred CCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHh----hcCCC-cCCEEEEEeC----CeeE
Q 017126 60 FDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLAS----KQEID-AFPTLKIFMH----GIPT 130 (377)
Q Consensus 60 ~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~----~~~i~-~~P~~~~~~~----g~~~ 130 (377)
.+..+|.|--+-.+.-..|.+.++++|+.... +++..|.=||-++-|-+.. .|+|. .-|.+-+..- +.-.
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~-np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtdadSvW~ 98 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTD-NPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDADSVWM 98 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCc-CCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccccceeE
Confidence 36778889888899999999999999998764 5789999999999887654 46665 3599988853 2333
Q ss_pred eecC---CCCHHHHHHHHHhh
Q 017126 131 EYYG---PRKAELLVRYLKKF 148 (377)
Q Consensus 131 ~y~g---~~~~~~i~~~~~~~ 148 (377)
.-.+ .-+++.|.+|+...
T Consensus 99 ~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 99 EMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred ecccccccCcHHHHHHHHHhh
Confidence 3333 36788888888653
No 393
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=49.61 E-value=33 Score=25.34 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=34.9
Q ss_pred EECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCC--cCCEEEEE-eCCe
Q 017126 67 FYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEID--AFPTLKIF-MHGI 128 (377)
Q Consensus 67 f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~--~~P~~~~~-~~g~ 128 (377)
||..+|+-|.....-+.+.. . ...+.+..+.-....++.+.+++. ..-+.++. .+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d----~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD----R-GGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC----C-CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 78999999998877666652 1 223666555444455566777765 34444443 4554
No 394
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=49.58 E-value=88 Score=21.85 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=31.7
Q ss_pred EEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcc-hhhHhhcCCCcCCEEEE
Q 017126 64 LVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKY-SRLASKQEIDAFPTLKI 123 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~~~~~~~i~~~P~~~~ 123 (377)
+..++.+.|+.|++..-.+... +-.+....++.... +++.+......+|.+..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-------gl~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-------NIPHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-------CCCCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 5566788899998764433332 22345555555433 33555556678899974
No 395
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=49.57 E-value=41 Score=28.62 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=38.6
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCC-CCeEEEEEeCC
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLK-EPIVIAKVDAD 104 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~-~~v~~~~vd~~ 104 (377)
.+.+++|-+-..+|..|..-+..++.+..+|.+.+ .+|.|..||-.
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 44788888888899999999999999998887654 47999999954
No 396
>PRK09810 entericidin A; Provisional
Probab=48.11 E-value=19 Score=21.29 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=9.7
Q ss_pred CCchhHHHHHHHHHHHHHhh
Q 017126 3 GMSKGRIWILLCLLLLTGRG 22 (377)
Q Consensus 3 ~m~~~~~~~~~~~~~l~~~~ 22 (377)
||++...+.++.+++|+.|-
T Consensus 1 mMkk~~~l~~~~~~~L~aCN 20 (41)
T PRK09810 1 MMKRLIVLVLLASTLLTGCN 20 (41)
T ss_pred ChHHHHHHHHHHHHHHhhhh
Confidence 37775554443344444443
No 397
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=47.94 E-value=36 Score=28.26 Aligned_cols=43 Identities=16% Similarity=0.100 Sum_probs=31.8
Q ss_pred cchhhHhhcCCCcCCEEEEEeCCeeEeecCCCCHHHHHHHHHh
Q 017126 105 KYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKK 147 (377)
Q Consensus 105 ~~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~i~~~~~~ 147 (377)
-+|.+.++|+|..+|++++.-.+..-...|..+...-.+.+..
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~~~yD~I~GNIsl~~ALe~iA~ 192 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCSQGYDIIRGNLRVGQALEKVAA 192 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcCCCCCEEEecccHHHHHHHHHh
Confidence 3799999999999999999754322235788877666666654
No 398
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=47.77 E-value=25 Score=28.78 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=25.2
Q ss_pred hhhHhhcCCCcCCEEEEEeCCeeEeecCCCCHHHHHHHH
Q 017126 107 SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145 (377)
Q Consensus 107 ~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~i~~~~ 145 (377)
...+.++||.++|++++ +|+ .+.|....+.+.+.+
T Consensus 157 ~~~a~~~gi~gvPtfvv--~g~--~~~G~~~l~~~~~~l 191 (192)
T cd03022 157 TEEAIARGVFGVPTFVV--DGE--MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHcCCCcCCeEEE--CCe--eecccccHHHHHHHh
Confidence 35677889999999998 564 346777766665544
No 399
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=47.50 E-value=26 Score=26.20 Aligned_cols=18 Identities=17% Similarity=0.360 Sum_probs=13.6
Q ss_pred EEEEECCCChhHhhHHHH
Q 017126 64 LVDFYAPWCGHCKRLAPQ 81 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~ 81 (377)
+..|+.|.|+.|++...-
T Consensus 2 i~iy~~p~C~~crkA~~~ 19 (113)
T cd03033 2 IIFYEKPGCANNARQKAL 19 (113)
T ss_pred EEEEECCCCHHHHHHHHH
Confidence 356789999999876533
No 400
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=46.97 E-value=1.3e+02 Score=23.07 Aligned_cols=99 Identities=23% Similarity=0.253 Sum_probs=53.7
Q ss_pred CEEEe-ChhhHHHHHc-CCCeEEEEEECCCChhHhh--HHHHHHHHHHHhhcCCCCeEEEEEeCCcchhh---HhhcC--
Q 017126 44 KVIEL-DESNFDSAIS-SFDYILVDFYAPWCGHCKR--LAPQLDEAAPILAKLKEPIVIAKVDADKYSRL---ASKQE-- 114 (377)
Q Consensus 44 ~v~~l-~~~~f~~~~~-~~~~~~v~f~~~~C~~C~~--~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~---~~~~~-- 114 (377)
...+| |.+..+..++ +.+..||.. ++-|+ |.. .+|-...+... +. .+ =.+..|=...+.+- ++.|=
T Consensus 17 Gf~eL~T~e~Vd~~~~~~~GTtlVvV-NSVCG-CAag~ARPa~~~al~~-~k-kP-D~lvTVFAGqDkEAt~~aR~yf~~ 91 (136)
T PF06491_consen 17 GFEELTTAEEVDEALKNKEGTTLVVV-NSVCG-CAAGNARPAAAMALQN-DK-KP-DHLVTVFAGQDKEATAKAREYFEP 91 (136)
T ss_dssp T-EE--SHHHHHHHHHH--SEEEEEE-E-SSH-HHHHTHHHHHHHHHHH-SS----SEEEEEETTTSHHHHHHHHHTSTT
T ss_pred CccccCCHHHHHHHHhCCCCcEEEEE-ecccc-ccccccCHHHHHHHhC-CC-CC-CceEEeccCCCHHHHHHHHHhcCC
Confidence 44444 6788888887 555555544 67787 644 55665555443 22 33 23344444333332 34442
Q ss_pred -CCcCCEEEEEeCCeeEee-----cCCCCHHHHHHHHHh
Q 017126 115 -IDAFPTLKIFMHGIPTEY-----YGPRKAELLVRYLKK 147 (377)
Q Consensus 115 -i~~~P~~~~~~~g~~~~y-----~g~~~~~~i~~~~~~ 147 (377)
..+-|++-+|++|+.+.+ ...++++.|.+-+..
T Consensus 92 ~pPSSPS~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~ 130 (136)
T PF06491_consen 92 YPPSSPSIALFKDGELVHFIERHHIEGRPAEEIAENLQD 130 (136)
T ss_dssp S---SSEEEEEETTEEEEEE-GGGTTTS-HHHHHHHHHH
T ss_pred CCCCCchheeeeCCEEEEEeehhhcCCCCHHHHHHHHHH
Confidence 346799999999998753 446778877766543
No 401
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.15 E-value=18 Score=24.49 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=19.3
Q ss_pred EEEECCCChhHhhHHHHHHHHHHH
Q 017126 65 VDFYAPWCGHCKRLAPQLDEAAPI 88 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~~~~a~~ 88 (377)
++|++.-|+.|..+...++++.-.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~ 28 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD 28 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC
Confidence 789999999998887777766543
No 402
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=46.11 E-value=44 Score=26.48 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=28.8
Q ss_pred hhhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHH
Q 017126 206 SEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEF 242 (377)
Q Consensus 206 ~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~g~~~~~~ 242 (377)
.++++..|++++.|+++++...++.-....|-+..+.
T Consensus 104 ~~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~ 140 (182)
T COG2143 104 TEELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQ 140 (182)
T ss_pred HHHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHH
Confidence 4788999999999999999986555555667666554
No 403
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=45.92 E-value=74 Score=28.72 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=53.3
Q ss_pred CChhHhhHHHHHHHHHHHh----hcCCCCeEEEEEeCCcc-hhh--HhhcCCCc--CCEEEEEeCCeeEe-ecCCCCHHH
Q 017126 71 WCGHCKRLAPQLDEAAPIL----AKLKEPIVIAKVDADKY-SRL--ASKQEIDA--FPTLKIFMHGIPTE-YYGPRKAEL 140 (377)
Q Consensus 71 ~C~~C~~~~~~~~~~a~~~----~~~~~~v~~~~vd~~~~-~~~--~~~~~i~~--~P~~~~~~~g~~~~-y~g~~~~~~ 140 (377)
.||.|-+..-.+.+.++++ .....+..++..-|--| |.- -..+||.+ -|...+|.+|+.+. ..+..-.++
T Consensus 263 aCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~~~~~~~~ee 342 (361)
T COG0821 263 ACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKKLPEEDIVEE 342 (361)
T ss_pred ECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEecChhhHHHH
Confidence 5888888666555554444 33445688999999654 322 23567654 69999999998775 677777777
Q ss_pred HHHHHHhhc
Q 017126 141 LVRYLKKFV 149 (377)
Q Consensus 141 i~~~~~~~~ 149 (377)
+..-+.++.
T Consensus 343 l~~~i~~~~ 351 (361)
T COG0821 343 LEALIEAYA 351 (361)
T ss_pred HHHHHHHHH
Confidence 776665553
No 404
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=45.70 E-value=2.1e+02 Score=25.04 Aligned_cols=66 Identities=9% Similarity=0.149 Sum_probs=42.4
Q ss_pred ccChhhHHhhhcCCCcEEEEEEeCCC-----hHHHHHHHHHHHHHHHhCC-CcEEEEEeccchhhHHh----hcCC
Q 017126 257 PINQDTLNLLKDDKRKIVLAIVEDET-----EEKSQKLVTTLKAAASANR-ELVFCYVGIKQFADFAD----TFEA 322 (377)
Q Consensus 257 ~l~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~l~~~a~~~~-~~~f~~vd~~~~~~~~~----~~gi 322 (377)
.+++.+.+.+..-+.|+-+.++-..+ ........+.|++.+...+ ++.+-++|....+...+ .+|+
T Consensus 11 sLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi 86 (271)
T PF09822_consen 11 SLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGI 86 (271)
T ss_pred cCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCC
Confidence 34455555554555677777765542 3344566677778777777 49999999965555444 4888
No 405
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=45.59 E-value=2e+02 Score=24.78 Aligned_cols=35 Identities=11% Similarity=-0.013 Sum_probs=24.4
Q ss_pred CCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHhc
Q 017126 328 LPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 367 (377)
Q Consensus 328 ~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~ 367 (377)
.|...+++.+++.... +.+.++++++++.|+..++
T Consensus 201 ~PttfLIDk~GkVv~~-----~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 201 NFEKFLVDKNGKVVER-----YPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred CceEEEECCCCcEEEE-----ECCCCCHHHHHHHHHHHhc
Confidence 4778888887654332 1455677889999988775
No 406
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=44.92 E-value=1.4e+02 Score=22.90 Aligned_cols=28 Identities=11% Similarity=0.278 Sum_probs=19.3
Q ss_pred hhHHhhcCCC-CCC-----CCCeEEEEeCCCCce
Q 017126 314 ADFADTFEAN-KKS-----KLPKMVVWDGNENYL 341 (377)
Q Consensus 314 ~~~~~~~gi~-~~~-----~~P~l~i~~~~~~~~ 341 (377)
..+.+.+|+. ... ..|..++++.+++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~ 128 (146)
T PF08534_consen 95 GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVV 128 (146)
T ss_dssp SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEE
T ss_pred HHHHHHhCCccccccccCCeecEEEEEECCCEEE
Confidence 5677778761 011 899999999986543
No 407
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=44.39 E-value=1.3e+02 Score=22.50 Aligned_cols=92 Identities=15% Similarity=0.060 Sum_probs=56.3
Q ss_pred HHHcCCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEE-eCCcch-----------hhHhhcCCC--cCCE
Q 017126 55 SAISSFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKV-DADKYS-----------RLASKQEID--AFPT 120 (377)
Q Consensus 55 ~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~v-d~~~~~-----------~~~~~~~i~--~~P~ 120 (377)
+..-++++++|.-=++..+.-+.....+......+.+. ++.++.+ +-.... .+.++|++. ++-.
T Consensus 5 ~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR--di~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f~~ 82 (118)
T PF13778_consen 5 QFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER--DIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGFTV 82 (118)
T ss_pred HhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC--ceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCceEE
Confidence 33345455444333455666677777777766666553 3555555 333333 678888855 4344
Q ss_pred EEEEeCCee-EeecCCCCHHHHHHHHHhh
Q 017126 121 LKIFMHGIP-TEYYGPRKAELLVRYLKKF 148 (377)
Q Consensus 121 ~~~~~~g~~-~~y~g~~~~~~i~~~~~~~ 148 (377)
+++=++|.. ..+.++.+.+.|.+.|..+
T Consensus 83 vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 83 VLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 444466654 4699999999998888654
No 408
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=44.35 E-value=45 Score=30.35 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=50.3
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcC----CCCeEEEEEeCCcc-hhhH--hhcCCC--cCCEEEEEeCCee
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKL----KEPIVIAKVDADKY-SRLA--SKQEID--AFPTLKIFMHGIP 129 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~----~~~v~~~~vd~~~~-~~~~--~~~~i~--~~P~~~~~~~g~~ 129 (377)
..++-+| .||.|-+..-.+.+++.++++. ...+.++..-|.-| |.-+ ..+|+. +--...+|++|+.
T Consensus 263 ~~g~~~I-----SCPtCGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~ 337 (359)
T PF04551_consen 263 KRGPEII-----SCPTCGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEV 337 (359)
T ss_dssp -SS-EEE-----E----TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEE
T ss_pred cCCceee-----eCCCCCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEE
Confidence 3455455 4788877666666666666543 33689999999765 3333 356766 3455889999998
Q ss_pred Ee-e-cCCCCHHHHHHHHHhh
Q 017126 130 TE-Y-YGPRKAELLVRYLKKF 148 (377)
Q Consensus 130 ~~-y-~g~~~~~~i~~~~~~~ 148 (377)
+. . ....-.+.+.+-++++
T Consensus 338 v~k~~~ee~~vd~L~~~I~~~ 358 (359)
T PF04551_consen 338 VKKVIPEEEIVDELIELIEEH 358 (359)
T ss_dssp EEEE-CSTCHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHHhh
Confidence 86 5 6666677777777654
No 409
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=43.80 E-value=67 Score=25.57 Aligned_cols=52 Identities=6% Similarity=0.120 Sum_probs=38.9
Q ss_pred EEeccchhhHHhhcCCCCCCCCCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHhc
Q 017126 307 YVGIKQFADFADTFEANKKSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 367 (377)
Q Consensus 307 ~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~ 367 (377)
.+|.+ ....+..++ +...-++++++.+++..+.. ++.+|.++++++|.=+.+
T Consensus 108 vlD~~--G~~~~aW~L--~~~~SaiiVlDK~G~V~F~k-----~G~Ls~~Ev~qVi~Ll~~ 159 (160)
T PF09695_consen 108 VLDSN--GVVRKAWQL--QEESSAIIVLDKQGKVQFVK-----EGALSPAEVQQVIALLKK 159 (160)
T ss_pred EEcCC--CceeccccC--CCCCceEEEEcCCccEEEEE-----CCCCCHHHHHHHHHHHhc
Confidence 45554 346677888 35667899999988887775 788999999999876543
No 410
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=43.62 E-value=84 Score=22.22 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=40.4
Q ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCC--cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCC
Q 017126 276 AIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 337 (377)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~ 337 (377)
+++.. .........+.++++.+.+.. +..-.+|..++|+.++.+.+ ...|+++=..+.
T Consensus 8 Lyvag-~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~I---vATPtLIK~~P~ 67 (87)
T TIGR02654 8 LYVAG-NTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKI---LATPTLSKILPP 67 (87)
T ss_pred EEEeC-CCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCE---EEecHHhhcCCC
Confidence 34433 334445556666666665443 77888999999999999998 667988766664
No 411
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=43.58 E-value=37 Score=27.99 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=26.5
Q ss_pred chhhHhhcCCCcCCEEEEEeCCeeEeecCCCCHHHHHHHH
Q 017126 106 YSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYL 145 (377)
Q Consensus 106 ~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~i~~~~ 145 (377)
+...+.+.||.++|++++ +|+ ....|..+.+.+.+-+
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~-~~~~G~~~~~~~~~~i 200 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGK-YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCe-EeecCCCCHHHHHHHh
Confidence 345677899999999999 543 2357877777776543
No 412
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=43.17 E-value=46 Score=26.20 Aligned_cols=53 Identities=17% Similarity=0.429 Sum_probs=30.3
Q ss_pred EEEeecCChHHHHHHHHHhhhhhHH-HHhhcchhhhhhhcCCCCCCeEEEEcCC
Q 017126 175 LFIGFGLDESVMSNLALKYKKKAWF-AVAKDFSEDTMVLYDFDKVPALVALQPS 227 (377)
Q Consensus 175 ~~v~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~v~~~P~l~~~~~~ 227 (377)
+.|....+.+.++.+...+.-...+ -+.......+...|++.+.|+.+++.++
T Consensus 69 V~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l~~~y~v~~iPt~vlId~~ 122 (146)
T cd03008 69 VYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPD 122 (146)
T ss_pred EEEECCCCHHHHHHHHHHCCCCceeecccchHHHHHHHHcCCCCCCEEEEECCC
Confidence 4444344444566655554321111 1111223578889999999999999873
No 413
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=42.88 E-value=86 Score=23.52 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=22.9
Q ss_pred cchhhhhhhcCCCCCCeEEEEcCCCCCcccccC
Q 017126 204 DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYG 236 (377)
Q Consensus 204 ~~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~g 236 (377)
+.+..+...|++.+.|+.+++.+++.-...+.|
T Consensus 92 D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 92 DNDYATWRAYGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred CCchHHHHHhCCCcCCeEEEECCCCcEEEEEec
Confidence 445677788999999999999765443333333
No 414
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=41.59 E-value=9.2 Score=25.32 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=18.8
Q ss_pred cccchhhHHHHHHHHhcCccccccCC
Q 017126 351 EEDQGSQISRFLEGYREGRTEQKKNS 376 (377)
Q Consensus 351 ~~~t~e~i~~Fi~~~~~Gkl~~~~~~ 376 (377)
..+|.+++..+++.+.+|++.|.++|
T Consensus 13 ~~Ls~~e~~~~~~~i~~g~~s~~qia 38 (66)
T PF02885_consen 13 EDLSREEAKAAFDAILDGEVSDAQIA 38 (66)
T ss_dssp ----HHHHHHHHHHHHTTSS-HHHHH
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHH
Confidence 45789999999999999999887753
No 415
>PRK09301 circadian clock protein KaiB; Provisional
Probab=40.99 E-value=99 Score=22.64 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=42.0
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHHhCCC--cEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCC
Q 017126 273 IVLAIVEDETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGN 337 (377)
Q Consensus 273 ~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~ 337 (377)
.+-+++.. .....+...+.++++.+.+.. +..-.+|..++|+.+..+.| ...|+++=..+.
T Consensus 8 ~LrLyVag-~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~I---vATPTLIK~~P~ 70 (103)
T PRK09301 8 ILKLYVAG-NTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKI---LATPTLAKILPP 70 (103)
T ss_pred EEEEEEeC-CCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCe---EEecHHhhcCCC
Confidence 34444443 344445556667776665443 77888999999999999998 667987766664
No 416
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=40.64 E-value=54 Score=28.14 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=30.6
Q ss_pred chhhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhh
Q 017126 205 FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 250 (377)
Q Consensus 205 ~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~g~~~~~~l~~fi~~~ 250 (377)
.+..+...+|+.+.|++++... .+.|..+.++|...|...
T Consensus 203 ~~~~~a~~~gv~gTPt~~v~~~------~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 203 KNYKLAQQLGVNGTPTFIVNGK------LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHHHhcCCCcCCeEEECCe------eecCCCCHHHHHHHHHHh
Confidence 3567788899999999888531 778888888888877653
No 417
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=40.48 E-value=2.1e+02 Score=23.56 Aligned_cols=48 Identities=10% Similarity=0.083 Sum_probs=34.1
Q ss_pred EEEeccchhhHHhhcCCCCCCCCCeE-EEEeCCCCceeccCCCCCCcccchhhHHHHHH
Q 017126 306 CYVGIKQFADFADTFEANKKSKLPKM-VVWDGNENYLTVIGSESIDEEDQGSQISRFLE 363 (377)
Q Consensus 306 ~~vd~~~~~~~~~~~gi~~~~~~P~l-~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~ 363 (377)
+.+|. .......+|+ ...|.- +++|.+|+..... .|.++.+++++++.
T Consensus 129 vllD~--~g~v~~~~gv---~~~P~T~fVIDk~GkVv~~~-----~G~l~~ee~e~~~~ 177 (184)
T TIGR01626 129 VVLDD--KGAVKNAWQL---NSEDSAIIVLDKTGKVKFVK-----EGALSDSDIQTVIS 177 (184)
T ss_pred EEECC--cchHHHhcCC---CCCCceEEEECCCCcEEEEE-----eCCCCHHHHHHHHH
Confidence 45665 3556778998 778777 8999988765543 66778888877443
No 418
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=39.93 E-value=40 Score=25.34 Aligned_cols=21 Identities=24% Similarity=0.601 Sum_probs=15.4
Q ss_pred EEEEECCCChhHhhHHHHHHH
Q 017126 64 LVDFYAPWCGHCKRLAPQLDE 84 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~~ 84 (377)
+..|+.|.|+.|+....-+++
T Consensus 3 itiy~~p~C~t~rka~~~L~~ 23 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEE 23 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456789999999887554443
No 419
>PRK15000 peroxidase; Provisional
Probab=39.46 E-value=2.2e+02 Score=23.63 Aligned_cols=58 Identities=10% Similarity=0.152 Sum_probs=35.0
Q ss_pred hhHHhhcCCCC---CCCCCeEEEEeCCCCcee-ccCCCCCCcccchhhHHHHHHHHhc----Cccccc
Q 017126 314 ADFADTFEANK---KSKLPKMVVWDGNENYLT-VIGSESIDEEDQGSQISRFLEGYRE----GRTEQK 373 (377)
Q Consensus 314 ~~~~~~~gi~~---~~~~P~l~i~~~~~~~~~-~~~~~~~~~~~t~e~i~~Fi~~~~~----Gkl~~~ 373 (377)
.++++.||+.. +...|+.++++++++... ..+.... .-+.+++-+.++...- |.+.|.
T Consensus 108 ~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~--gr~~~eilr~l~al~~~~~~~~~~p~ 173 (200)
T PRK15000 108 REIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPL--GRNIDEMLRMVDALQFHEEHGDVCPA 173 (200)
T ss_pred cHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCC--CCCHHHHHHHHHHhhhHHhcCCCcCC
Confidence 67888899821 125899999999764322 2222222 2356677777766443 766664
No 420
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=39.03 E-value=2.2e+02 Score=23.32 Aligned_cols=28 Identities=11% Similarity=-0.102 Sum_probs=19.3
Q ss_pred hhhHHhhcCCCC---CCCCCeEEEEeCCCCc
Q 017126 313 FADFADTFEANK---KSKLPKMVVWDGNENY 340 (377)
Q Consensus 313 ~~~~~~~~gi~~---~~~~P~l~i~~~~~~~ 340 (377)
...+++.||+.. +...|+..|++.+++.
T Consensus 101 ~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I 131 (187)
T TIGR03137 101 TGVLTRNFGVLIEEAGLADRGTFVIDPEGVI 131 (187)
T ss_pred ccHHHHHhCCcccCCCceeeEEEEECCCCEE
Confidence 367888999821 1146999999987643
No 421
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=38.61 E-value=2.7e+02 Score=24.32 Aligned_cols=78 Identities=15% Similarity=0.120 Sum_probs=50.7
Q ss_pred CCCEEEeChhhHHHHHcCCCeEEEEEECCC-C-hhHhhHHHHHHHHHHHhhcCCC-CeEEEEEeCCcchhhHhh----cC
Q 017126 42 DGKVIELDESNFDSAISSFDYILVDFYAPW-C-GHCKRLAPQLDEAAPILAKLKE-PIVIAKVDADKYSRLASK----QE 114 (377)
Q Consensus 42 ~~~v~~l~~~~f~~~~~~~~~~~v~f~~~~-C-~~C~~~~~~~~~~a~~~~~~~~-~v~~~~vd~~~~~~~~~~----~~ 114 (377)
.+....|++.+-+-+-+=.+++-|.+|.+. - +.-..+.+...++-++++..++ ++.+-.||-+.+++..++ +|
T Consensus 6 ~~k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~G 85 (271)
T PF09822_consen 6 ANKRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYG 85 (271)
T ss_pred CCCCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcC
Confidence 356677777765554444456666666443 1 1235566666666666666555 899999999887777666 88
Q ss_pred CCcCC
Q 017126 115 IDAFP 119 (377)
Q Consensus 115 i~~~P 119 (377)
|...+
T Consensus 86 i~~~~ 90 (271)
T PF09822_consen 86 IQPVQ 90 (271)
T ss_pred CCccc
Confidence 87633
No 422
>COG3915 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.56 E-value=1.9e+02 Score=22.37 Aligned_cols=88 Identities=17% Similarity=0.320 Sum_probs=39.9
Q ss_pred CCCEEEeChhhHHHHHcCCCeEEEEEECCCChhHhhHHH-HHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhcCCCcC-C
Q 017126 42 DGKVIELDESNFDSAISSFDYILVDFYAPWCGHCKRLAP-QLDEAAPILAKLKEPIVIAKVDADKYSRLASKQEIDAF-P 119 (377)
Q Consensus 42 ~~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~~~~~-~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~-P 119 (377)
++++..++-.+++.. .-.-+.-..||-.-..+|.. ....+-+-+......+.+...| +.-....--+++.| |
T Consensus 32 d~~~~~ft~qeLeal----~~~T~ete~Pw~~gn~rf~Gvsls~Ll~~l~ak~tslt~iALN--dY~a~Ip~sDi~kynp 105 (155)
T COG3915 32 DGPTVSFTLQELEAL----PDETIETETPWTQGNTRFKGVSLSALLAWLGAKQTSLTVIALN--DYWAEIPYSDIEKYNP 105 (155)
T ss_pred CCCceeecHHHHhcC----CcceEEEecCcccCceeecceeHHHHHHHhhccCcceEEEEec--ceeccCcHHHhhhccc
Confidence 455666666665542 11223344677332333322 1222222222223346666665 22111112233444 7
Q ss_pred EEEEEeCCeeEe--ecCC
Q 017126 120 TLKIFMHGIPTE--YYGP 135 (377)
Q Consensus 120 ~~~~~~~g~~~~--y~g~ 135 (377)
-+-++.+|.... -+|+
T Consensus 106 IlA~~~nGn~M~IRerGP 123 (155)
T COG3915 106 ILAIQNNGNYMQIRERGP 123 (155)
T ss_pred EEEEEeCCcEEEEeccCc
Confidence 788888887553 4553
No 423
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=37.18 E-value=50 Score=22.77 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCCCeEEEEcCCCCCccccc-CCCCHHHHHHHHHhhC
Q 017126 216 DKVPALVALQPSYNEHNIFY-GPFDEEFLEEFIKQNF 251 (377)
Q Consensus 216 ~~~P~l~~~~~~~~~~~~~~-g~~~~~~l~~fi~~~~ 251 (377)
...|.|+++...++.....+ ..++.++|.+|+.+..
T Consensus 40 G~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 40 GAPPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp S---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 34699999987666555544 6789999999998764
No 424
>PLN02412 probable glutathione peroxidase
Probab=37.00 E-value=2.2e+02 Score=22.78 Aligned_cols=35 Identities=3% Similarity=-0.084 Sum_probs=24.9
Q ss_pred CCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHhc
Q 017126 328 LPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 367 (377)
Q Consensus 328 ~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~ 367 (377)
.|+..+++.+++.... +.+.++.+++.+.|+..++
T Consensus 131 ~p~tflId~~G~vv~~-----~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 131 NFTKFLVSKEGKVVQR-----YAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCeeEEECCCCcEEEE-----ECCCCCHHHHHHHHHHHHh
Confidence 5788888887654433 2466778889998888764
No 425
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=36.88 E-value=1.4e+02 Score=27.22 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=46.4
Q ss_pred CChhHhhHHHHHHHH----HHHhhcCCCCeEEEEEeCC-cchhhH--hhcCCCc-CCEEEEEeCCeeEe-ecCCCCHHHH
Q 017126 71 WCGHCKRLAPQLDEA----APILAKLKEPIVIAKVDAD-KYSRLA--SKQEIDA-FPTLKIFMHGIPTE-YYGPRKAELL 141 (377)
Q Consensus 71 ~C~~C~~~~~~~~~~----a~~~~~~~~~v~~~~vd~~-~~~~~~--~~~~i~~-~P~~~~~~~g~~~~-y~g~~~~~~i 141 (377)
.|+.|.+-.-....+ .+.+.+...++.++..-|. +.+.-+ ..+||.+ -+...+|.+|+.+. ..+..-.+.+
T Consensus 270 sCPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~~~~~~l 349 (360)
T PRK00366 270 SCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEENIVEEL 349 (360)
T ss_pred ECCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChHhHHHHH
Confidence 466666655444444 4444444456999999995 554443 4567764 56778899999886 4554444444
Q ss_pred HHHHH
Q 017126 142 VRYLK 146 (377)
Q Consensus 142 ~~~~~ 146 (377)
.+-+.
T Consensus 350 ~~~i~ 354 (360)
T PRK00366 350 EAEIE 354 (360)
T ss_pred HHHHH
Confidence 44443
No 426
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=35.87 E-value=1.5e+02 Score=20.56 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=35.8
Q ss_pred EEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccch----hhHHhhcCCCCCCCCCeEEE
Q 017126 276 AIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQF----ADFADTFEANKKSKLPKMVV 333 (377)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~~----~~~~~~~gi~~~~~~P~l~i 333 (377)
.++.....+...+..+.|.++..++.++.|..+|.... ..+....|- .....|.+++
T Consensus 3 ~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~-~~~tVP~ifi 63 (86)
T TIGR02183 3 VIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGK-PVETVPQIFV 63 (86)
T ss_pred EEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCC-CCCCcCeEEE
Confidence 44555666777778888888776666666777766532 234444443 2267899965
No 427
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=35.68 E-value=1.8e+02 Score=21.57 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.4
Q ss_pred cchhhhhhhcCCCCCCeEEEEcC
Q 017126 204 DFSEDTMVLYDFDKVPALVALQP 226 (377)
Q Consensus 204 ~~~~~~~~~~~v~~~P~l~~~~~ 226 (377)
..+..+.++|+|+.-|++++-++
T Consensus 58 ~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 58 QIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred eEChhHHhhCCceEcCEEEEEcC
Confidence 35789999999999999999876
No 428
>PF12563 Hemolysin_N: Hemolytic toxin N terminal; InterPro: IPR022220 This domain family is found in bacteria, and is approximately 190 amino acids in length. The family is found in association with PF07968 from PFAM, PF00652 from PFAM. This family is a bacterial virulence factor - hemolysin - which forms pores in erythrocytes and causes them to lyse. ; PDB: 1XEZ_A 3O44_I.
Probab=35.08 E-value=33 Score=27.84 Aligned_cols=13 Identities=8% Similarity=0.250 Sum_probs=4.9
Q ss_pred CCCCEEEeChhhH
Q 017126 41 IDGKVIELDESNF 53 (377)
Q Consensus 41 ~~~~v~~l~~~~f 53 (377)
+++.|..++.+++
T Consensus 43 d~~~i~Y~Na~~w 55 (187)
T PF12563_consen 43 DSSQINYINAANW 55 (187)
T ss_dssp ----EEEEEGGGG
T ss_pred CccceeEeehhhh
Confidence 3456666655543
No 429
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=34.87 E-value=1.9e+02 Score=24.27 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=18.6
Q ss_pred EEEECCCChhHhhHHHHHHHHHHH
Q 017126 65 VDFYAPWCGHCKRLAPQLDEAAPI 88 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~~~~a~~ 88 (377)
=+|++..|..|-.....+.+++..
T Consensus 3 ELFTSQGCsSCPpAD~~L~~l~~~ 26 (202)
T PF06764_consen 3 ELFTSQGCSSCPPADRLLSELAAR 26 (202)
T ss_dssp EEEE-TT-TT-HHHHHHHHHHHHH
T ss_pred eEecCCCCCCCcHHHHHHHHhhcC
Confidence 368899999999999999999987
No 430
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=34.70 E-value=29 Score=20.99 Aligned_cols=11 Identities=36% Similarity=0.353 Sum_probs=7.1
Q ss_pred CchhHHHHHHH
Q 017126 4 MSKGRIWILLC 14 (377)
Q Consensus 4 m~~~~~~~~~~ 14 (377)
|+|.|..++++
T Consensus 1 ~kk~rwiili~ 11 (47)
T PRK10299 1 MKKFRWVVLVV 11 (47)
T ss_pred CceeeehHHHH
Confidence 67777766543
No 431
>COG3411 Ferredoxin [Energy production and conversion]
Probab=34.66 E-value=78 Score=20.82 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=25.0
Q ss_pred CCEEEEEeCCeeEeecCCCCHHHHHHHHHhhcC
Q 017126 118 FPTLKIFMHGIPTEYYGPRKAELLVRYLKKFVA 150 (377)
Q Consensus 118 ~P~~~~~~~g~~~~y~g~~~~~~i~~~~~~~~~ 150 (377)
=|.+.+|.+| .+.+..+++...+.++.++.
T Consensus 17 gPvl~vYpeg---vWY~~V~p~~a~rIv~~hl~ 46 (64)
T COG3411 17 GPVLVVYPEG---VWYTRVDPEDARRIVQSHLL 46 (64)
T ss_pred CCEEEEecCC---eeEeccCHHHHHHHHHHHHh
Confidence 3999999999 56677889999999988875
No 432
>COG5510 Predicted small secreted protein [Function unknown]
Probab=34.11 E-value=57 Score=19.49 Aligned_cols=6 Identities=33% Similarity=0.385 Sum_probs=3.0
Q ss_pred CchhHH
Q 017126 4 MSKGRI 9 (377)
Q Consensus 4 m~~~~~ 9 (377)
|++.+.
T Consensus 2 mk~t~l 7 (44)
T COG5510 2 MKKTIL 7 (44)
T ss_pred chHHHH
Confidence 666433
No 433
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=33.96 E-value=1.7e+02 Score=20.79 Aligned_cols=50 Identities=12% Similarity=0.018 Sum_probs=29.9
Q ss_pred CChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCcchhhHhhc--------CCCcCCEEE
Q 017126 71 WCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADKYSRLASKQ--------EIDAFPTLK 122 (377)
Q Consensus 71 ~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~i~~~P~~~ 122 (377)
.+.-.+.....=..+...++.. ++.+-.+|.+.+++.-+.. +-..+|.|+
T Consensus 8 s~~g~~~~k~~~~~v~~lL~~k--~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIF 65 (92)
T cd03030 8 SSSGSTEIKKRQQEVLGFLEAK--KIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIF 65 (92)
T ss_pred cccccHHHHHHHHHHHHHHHHC--CCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEE
Confidence 3333555555555566666654 3889999998776543332 335667765
No 434
>PF15284 PAGK: Phage-encoded virulence factor
Probab=33.33 E-value=48 Score=21.42 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=8.0
Q ss_pred CchhHHHHHHHHHHHHHhh
Q 017126 4 MSKGRIWILLCLLLLTGRG 22 (377)
Q Consensus 4 m~~~~~~~~~~~~~l~~~~ 22 (377)
|++.+...+.+++.|++.+
T Consensus 1 Mkk~ksifL~l~~~LsA~~ 19 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAG 19 (61)
T ss_pred ChHHHHHHHHHHHHHHHhh
Confidence 5554433443333333333
No 435
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=32.97 E-value=64 Score=25.84 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=18.5
Q ss_pred chhhHhhcCCCcCCEEEEEeCCeeE
Q 017126 106 YSRLASKQEIDAFPTLKIFMHGIPT 130 (377)
Q Consensus 106 ~~~~~~~~~i~~~P~~~~~~~g~~~ 130 (377)
+...+.++||.++|++++ +|+.+
T Consensus 132 ~~~~~~~~gi~gTPt~iI--nG~~~ 154 (178)
T cd03019 132 AEKLAKKYKITGVPAFVV--NGKYV 154 (178)
T ss_pred HHHHHHHcCCCCCCeEEE--CCEEE
Confidence 346788899999999998 67654
No 436
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=32.75 E-value=48 Score=24.62 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=13.8
Q ss_pred EEEECCCChhHhhHHHHH
Q 017126 65 VDFYAPWCGHCKRLAPQL 82 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~ 82 (377)
..|+.|.|..|++....+
T Consensus 2 ~iy~~~~C~t~rkA~~~L 19 (112)
T cd03034 2 TIYHNPRCSKSRNALALL 19 (112)
T ss_pred EEEECCCCHHHHHHHHHH
Confidence 467899999999875433
No 437
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=32.61 E-value=32 Score=23.97 Aligned_cols=49 Identities=8% Similarity=0.165 Sum_probs=38.7
Q ss_pred CChHHHHHHHHHHHHHHHhCCC--cEEEEEeccchhhHHhhcCCCCCCCCCeEE
Q 017126 281 ETEEKSQKLVTTLKAAASANRE--LVFCYVGIKQFADFADTFEANKKSKLPKMV 332 (377)
Q Consensus 281 ~~~~~~~~~~~~l~~~a~~~~~--~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~ 332 (377)
......+.....++.+...+.+ +.+-.+|..++++.+...++ ...|+++
T Consensus 6 g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~i---vAtPtLi 56 (82)
T PF07689_consen 6 GRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRI---VATPTLI 56 (82)
T ss_dssp SBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEE---ECHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCe---eecceEe
Confidence 4566667778888888887555 88889999999999999888 5556654
No 438
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.31 E-value=67 Score=27.54 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=29.0
Q ss_pred hhhHhhcCCCcCCEEEEEeCCeeEeecCCCCHHHHHHHHHhh
Q 017126 107 SRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAELLVRYLKKF 148 (377)
Q Consensus 107 ~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~i~~~~~~~ 148 (377)
..+.+++|+.+.|++++-.. .|.|....+.|.+.+...
T Consensus 205 ~~~a~~~gv~gTPt~~v~~~----~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 205 YKLAQQLGVNGTPTFIVNGK----LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHhcCCCcCCeEEECCe----eecCCCCHHHHHHHHHHh
Confidence 45677889999999988654 677777788887776543
No 439
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=30.92 E-value=45 Score=24.48 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=13.3
Q ss_pred CCchhHHHHHHHHHHHHHhhhhh
Q 017126 3 GMSKGRIWILLCLLLLTGRGMML 25 (377)
Q Consensus 3 ~m~~~~~~~~~~~~~l~~~~~~~ 25 (377)
+|..+++..+++.++|+.|++..
T Consensus 2 ~~~mk~~~~l~~~l~LS~~s~~~ 24 (104)
T PRK14864 2 NMVMRRFASLLLTLLLSACSALQ 24 (104)
T ss_pred chHHHHHHHHHHHHHHhhhhhcc
Confidence 34455566666666666665444
No 440
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=30.44 E-value=55 Score=24.40 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=15.1
Q ss_pred EEEECCCChhHhhHHHHHHH
Q 017126 65 VDFYAPWCGHCKRLAPQLDE 84 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~~~ 84 (377)
..|+.|.|..|++....+++
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~ 21 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED 21 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 46789999999887655444
No 441
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=30.08 E-value=2.1e+02 Score=21.82 Aligned_cols=66 Identities=12% Similarity=0.036 Sum_probs=39.0
Q ss_pred CCcEEEEEEeCCChHHHHHHHHHHHHHHHhCC--CcEEEEEeccchhhHHhhcCCCCCCCCCeEEEEeCCC
Q 017126 270 KRKIVLAIVEDETEEKSQKLVTTLKAAASANR--ELVFCYVGIKQFADFADTFEANKKSKLPKMVVWDGNE 338 (377)
Q Consensus 270 ~~~~~i~~~~~~~~~~~~~~~~~l~~~a~~~~--~~~f~~vd~~~~~~~~~~~gi~~~~~~P~l~i~~~~~ 338 (377)
+++++++|+-..-..........|.++..++. ++.++.|..+.......... ..+.|.-++.+.++
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~---~~~~~~p~~~D~~~ 90 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDK---GKFLPFPVYADPDR 90 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHH---hcCCCCeEEECCch
Confidence 36777777755556666677777888888774 37777776554333222221 13334456777753
No 442
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=29.59 E-value=1.7e+02 Score=19.41 Aligned_cols=67 Identities=9% Similarity=-0.023 Sum_probs=37.7
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCC----cchhhHhhcCCCcCCEEEEEeCCeeEeecCCCCHHH
Q 017126 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDAD----KYSRLASKQEIDAFPTLKIFMHGIPTEYYGPRKAEL 140 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~----~~~~~~~~~~i~~~P~~~~~~~g~~~~y~g~~~~~~ 140 (377)
..++.+.|+.|++.+-.+. ..+-++.+..+|.. ..+++.+-..-..+|++. .+|..+ .....
T Consensus 2 ~ly~~~~s~~s~rv~~~L~-------e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~--~~g~~l-----~Es~a 67 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIA-------EKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI--HGDNII-----CDPTQ 67 (73)
T ss_pred EEecCCCCccHHHHHHHHH-------HcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEE--ECCEEE-----EcHHH
Confidence 5677888888877652222 22233566666653 234455555666789996 355432 23445
Q ss_pred HHHHH
Q 017126 141 LVRYL 145 (377)
Q Consensus 141 i~~~~ 145 (377)
|.+|+
T Consensus 68 I~~yL 72 (73)
T cd03052 68 IIDYL 72 (73)
T ss_pred HHHHh
Confidence 55544
No 443
>PRK09738 small toxic polypeptide; Provisional
Probab=29.44 E-value=61 Score=20.35 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=14.1
Q ss_pred CCchhHHHHHHHHHHHHHhhhhhh
Q 017126 3 GMSKGRIWILLCLLLLTGRGMMLL 26 (377)
Q Consensus 3 ~m~~~~~~~~~~~~~l~~~~~~~~ 26 (377)
+|.++..+.-++++++.++.....
T Consensus 2 kmp~~~~~~~livvCiTvL~f~~l 25 (52)
T PRK09738 2 KLPRSPLVWCVLIVCLTLLIFTYL 25 (52)
T ss_pred CCccceehhhHHHHHHHHHHHHHH
Confidence 576766655556666665554444
No 444
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=28.89 E-value=2.1e+02 Score=25.28 Aligned_cols=101 Identities=12% Similarity=0.150 Sum_probs=52.6
Q ss_pred cchhhhhhhcCCCCCCeEEEEcCCCCCcccccC-CCCHHHHHHHHHhh-CCCcccccChhhHHhh----hcCCCcEEEEE
Q 017126 204 DFSEDTMVLYDFDKVPALVALQPSYNEHNIFYG-PFDEEFLEEFIKQN-FLPLSVPINQDTLNLL----KDDKRKIVLAI 277 (377)
Q Consensus 204 ~~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~g-~~~~~~l~~fi~~~-~~p~~~~l~~~~~~~~----~~~~~~~~i~~ 277 (377)
+.+.+..+++++.-.|--+.+. +....+| +++.+++.+.+++. ..|.-...++..+.+. ...+..-++.+
T Consensus 11 dl~~~~~~~~~i~vvPl~i~~~----~~~y~D~~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ii~i 86 (280)
T PF02645_consen 11 DLPPELAEEYGIYVVPLNIIID----GKEYRDGVDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDEIIVI 86 (280)
T ss_dssp ---HHHHHHTTEEEE--EEEET----TEEEETTTTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCCHHHHHhCCeEEEeEEEecC----CeEEecCCCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCeEEEE
Confidence 4557778888988888777764 2333344 68899999999554 4444555555554433 33454534444
Q ss_pred E-eCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccc
Q 017126 278 V-EDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ 312 (377)
Q Consensus 278 ~-~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~ 312 (377)
. ...-... .+....+++.+++..+..+|...
T Consensus 87 ~iSs~LSgt----y~~a~~aa~~~~~~~i~ViDS~~ 118 (280)
T PF02645_consen 87 TISSGLSGT----YNSARLAAKMLPDIKIHVIDSKS 118 (280)
T ss_dssp ES-TTT-TH----HHHHHHHHHHHTTTEEEEEE-SS
T ss_pred eCCcchhhH----HHHHHHHHhhcCcCEEEEEeCCC
Confidence 3 2222222 23444455555557778888865
No 445
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=28.43 E-value=95 Score=26.59 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=31.7
Q ss_pred chhhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHHhh
Q 017126 205 FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIKQN 250 (377)
Q Consensus 205 ~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~g~~~~~~l~~fi~~~ 250 (377)
.+..+..++|+.+.|++++ . +.....|....+.|.++|...
T Consensus 190 ~~~~la~~lgi~gTPtiv~-~----~G~~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 190 DHYALGVQFGVQGTPAIVL-S----NGTLVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred HhHHHHHHcCCccccEEEE-c----CCeEeeCCCCHHHHHHHHHHc
Confidence 3567788999999999884 3 234558888999999999864
No 446
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=28.38 E-value=40 Score=17.55 Aligned_cols=11 Identities=45% Similarity=0.718 Sum_probs=4.6
Q ss_pred HHHHHHHHHHh
Q 017126 11 ILLCLLLLTGR 21 (377)
Q Consensus 11 ~~~~~~~l~~~ 21 (377)
.+++++.|+.|
T Consensus 13 ~l~a~~~LagC 23 (25)
T PF08139_consen 13 PLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHhhc
Confidence 33344444444
No 447
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=28.32 E-value=1.8e+02 Score=25.27 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=7.0
Q ss_pred HHhhhcCCCcEEEEEEe
Q 017126 263 LNLLKDDKRKIVLAIVE 279 (377)
Q Consensus 263 ~~~~~~~~~~~~i~~~~ 279 (377)
++++...++-++++..+
T Consensus 235 lEqLa~~nPd~mil~t~ 251 (310)
T COG4594 235 LEQLAAINPDVMILATY 251 (310)
T ss_pred HHHHhcCCCCEEEEEec
Confidence 34444333444444433
No 448
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=28.29 E-value=3.4e+02 Score=22.38 Aligned_cols=26 Identities=8% Similarity=0.104 Sum_probs=18.6
Q ss_pred hhHHhhcCCC-C--CCCCCeEEEEeCCCC
Q 017126 314 ADFADTFEAN-K--KSKLPKMVVWDGNEN 339 (377)
Q Consensus 314 ~~~~~~~gi~-~--~~~~P~l~i~~~~~~ 339 (377)
.++++.||+- . +..+|..+|++++++
T Consensus 110 ~~ia~~ygv~~~~~g~~~r~~fiID~~G~ 138 (199)
T PTZ00253 110 KSIARSYGVLEEEQGVAYRGLFIIDPKGM 138 (199)
T ss_pred hHHHHHcCCcccCCCceEEEEEEECCCCE
Confidence 6788888872 1 124689999999865
No 449
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=28.06 E-value=49 Score=27.00 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=18.5
Q ss_pred hhhHhhcCCCcCCEEEEEeCCe
Q 017126 107 SRLASKQEIDAFPTLKIFMHGI 128 (377)
Q Consensus 107 ~~~~~~~~i~~~P~~~~~~~g~ 128 (377)
...+.++||.++|++++..++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 4567788999999999998865
No 450
>PLN03207 stomagen; Provisional
Probab=27.95 E-value=63 Score=23.11 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=8.2
Q ss_pred CCCeEEEEEECCCC
Q 017126 59 SFDYILVDFYAPWC 72 (377)
Q Consensus 59 ~~~~~~v~f~~~~C 72 (377)
..+-.+|--.+|-|
T Consensus 63 ~srr~~igs~aptc 76 (113)
T PLN03207 63 SSRRLMIGSTAPTC 76 (113)
T ss_pred hhhhhhhcCcCCcc
Confidence 33555666667765
No 451
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=27.89 E-value=53 Score=27.47 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=17.1
Q ss_pred hhHhhcCCCcCCEEEEEeCCeeE
Q 017126 108 RLASKQEIDAFPTLKIFMHGIPT 130 (377)
Q Consensus 108 ~~~~~~~i~~~P~~~~~~~g~~~ 130 (377)
...+++||.++|++++ +|+.+
T Consensus 158 ~~a~~~gI~gtPtfiI--nGky~ 178 (207)
T PRK10954 158 KAAADLQLRGVPAMFV--NGKYM 178 (207)
T ss_pred HHHHHcCCCCCCEEEE--CCEEE
Confidence 4568899999999999 77654
No 452
>PRK13191 putative peroxiredoxin; Provisional
Probab=27.79 E-value=3.7e+02 Score=22.64 Aligned_cols=51 Identities=10% Similarity=0.109 Sum_probs=30.1
Q ss_pred hhHHhhcCCCC----CCCCCeEEEEeCCCCceec-cCCCCCCcccchhhHHHHHHHHh
Q 017126 314 ADFADTFEANK----KSKLPKMVVWDGNENYLTV-IGSESIDEEDQGSQISRFLEGYR 366 (377)
Q Consensus 314 ~~~~~~~gi~~----~~~~P~l~i~~~~~~~~~~-~~~~~~~~~~t~e~i~~Fi~~~~ 366 (377)
.++++.||+-. ....|+.+|++++++.... ...... .-+.+++-+.|+...
T Consensus 106 ~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~--gr~~~eilr~l~alq 161 (215)
T PRK13191 106 GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEI--GRNIDEILRAIRALQ 161 (215)
T ss_pred hHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCC--CCCHHHHHHHHHHhh
Confidence 77888999721 2347999999998643221 111112 235667777776643
No 453
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=27.65 E-value=1.1e+02 Score=27.73 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=41.8
Q ss_pred CCCeEEEEEECCCChhHhhHH----HHHHHHHHHhhcCCCCeEEEEEeCCcc-hhhH--hhcCCCc--CCEEEEEeCCee
Q 017126 59 SFDYILVDFYAPWCGHCKRLA----PQLDEAAPILAKLKEPIVIAKVDADKY-SRLA--SKQEIDA--FPTLKIFMHGIP 129 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~----~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~~~--~~~~i~~--~P~~~~~~~g~~ 129 (377)
+..+-+| .||.|-+.. ....++.+.+.....++.++..-|.-| |.-+ ..+||.+ .-...+|++|+.
T Consensus 254 ~~g~~ii-----SCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~ 328 (346)
T TIGR00612 254 ARGVEIV-----ACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKP 328 (346)
T ss_pred cCCCeEE-----ECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEE
Confidence 3345555 355555433 344444555555556799999999755 3333 3467763 456788999988
Q ss_pred Ee
Q 017126 130 TE 131 (377)
Q Consensus 130 ~~ 131 (377)
+.
T Consensus 329 ~~ 330 (346)
T TIGR00612 329 KA 330 (346)
T ss_pred eE
Confidence 75
No 454
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=27.10 E-value=1.2e+02 Score=17.35 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHhhCCCccccc-ChhhH
Q 017126 237 PFDEEFLEEFIKQNFLPLSVPI-NQDTL 263 (377)
Q Consensus 237 ~~~~~~l~~fi~~~~~p~~~~l-~~~~~ 263 (377)
.++.++|.+|+..+..+.-... +.+.+
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~~~~rd~L 30 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKSAKTRDEL 30 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCCCCCHHHH
Confidence 4677899999999988775554 44433
No 455
>PRK13620 psbV cytochrome c-550; Provisional
Probab=26.65 E-value=44 Score=27.75 Aligned_cols=29 Identities=24% Similarity=0.526 Sum_probs=19.4
Q ss_pred CCCCCEEEeChhhHHHHHcCCCeEEEEEECCCChhHh
Q 017126 40 KIDGKVIELDESNFDSAISSFDYILVDFYAPWCGHCK 76 (377)
Q Consensus 40 ~~~~~v~~l~~~~f~~~~~~~~~~~v~f~~~~C~~C~ 76 (377)
..++..+.++.++..+= +-+ | ..||..|+
T Consensus 91 n~~G~tvtfS~eq~~~G----kqL---F-~~~Ca~CH 119 (215)
T PRK13620 91 NPQGDNVTLSLKQVAEG----KQL---F-AYACGQCH 119 (215)
T ss_pred CCCCCeecCCHHHHHHH----HHH---H-Hhhhhhcc
Confidence 34567888888876552 111 2 77999997
No 456
>PTZ00056 glutathione peroxidase; Provisional
Probab=26.13 E-value=3.8e+02 Score=22.20 Aligned_cols=34 Identities=3% Similarity=0.014 Sum_probs=21.1
Q ss_pred eEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHhcC
Q 017126 330 KMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYREG 368 (377)
Q Consensus 330 ~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~G 368 (377)
+..+++.+|+..... .+..+.+.+.+.|...++.
T Consensus 147 ~tflID~~G~iv~~~-----~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 147 GKFLVNKSGNVVAYF-----SPRTEPLELEKKIAELLGV 180 (199)
T ss_pred EEEEECCCCcEEEEe-----CCCCCHHHHHHHHHHHHHH
Confidence 577888776543321 3445667788877776653
No 457
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=25.34 E-value=83 Score=21.98 Aligned_cols=9 Identities=33% Similarity=0.630 Sum_probs=4.6
Q ss_pred CchhHHHHH
Q 017126 4 MSKGRIWIL 12 (377)
Q Consensus 4 m~~~~~~~~ 12 (377)
|++.++++.
T Consensus 1 MKK~kii~i 9 (85)
T PF11337_consen 1 MKKKKIILI 9 (85)
T ss_pred CCchHHHHH
Confidence 676444433
No 458
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=24.55 E-value=4.8e+02 Score=22.85 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=39.0
Q ss_pred cEEEE-EeccchhhHHhhcCCCC--CCCCCeEEEEeCCCCceecc-CCCCCCcccchhhHHHHHHHHh----cCccccc
Q 017126 303 LVFCY-VGIKQFADFADTFEANK--KSKLPKMVVWDGNENYLTVI-GSESIDEEDQGSQISRFLEGYR----EGRTEQK 373 (377)
Q Consensus 303 ~~f~~-vd~~~~~~~~~~~gi~~--~~~~P~l~i~~~~~~~~~~~-~~~~~~~~~t~e~i~~Fi~~~~----~Gkl~~~ 373 (377)
+.|-. .|. ..++++.||+-. +...|..+|++.+++..+.. .. ....-+.+++-+-|+.+. .|.+.|.
T Consensus 162 l~fPlLsD~--~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~~--~~~gr~v~eiLr~l~alq~~~~~g~~cPa 236 (261)
T PTZ00137 162 LKFPLFSDI--SREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYD--LGLGRSVDETLRLFDAVQFAEKTGNVCPV 236 (261)
T ss_pred cceEEEEcC--ChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEeC--CCCCCCHHHHHHHHHHhchhhhcCCCcCC
Confidence 44533 354 277899999821 12579999999876432221 11 122235667777776654 4777654
No 459
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=24.47 E-value=1.9e+02 Score=21.89 Aligned_cols=41 Identities=10% Similarity=-0.004 Sum_probs=26.5
Q ss_pred cchhhhhhhcCCCCC---------CeEEEEcCCCCCcccccCCCCHHHHH
Q 017126 204 DFSEDTMVLYDFDKV---------PALVALQPSYNEHNIFYGPFDEEFLE 244 (377)
Q Consensus 204 ~~~~~~~~~~~v~~~---------P~l~~~~~~~~~~~~~~g~~~~~~l~ 244 (377)
+.+..+...|++... |+.+++.+++.-...+.|.....++.
T Consensus 87 D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~ 136 (140)
T cd03017 87 DPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAE 136 (140)
T ss_pred CCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCCccchHH
Confidence 344556666776665 88888887666666677766554444
No 460
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=23.42 E-value=1.3e+02 Score=21.88 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=24.4
Q ss_pred CCCCCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHHHHhc
Q 017126 325 KSKLPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLEGYRE 367 (377)
Q Consensus 325 ~~~~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~~~~~ 367 (377)
+..+|.+.+-..+++|.++ .+-.|.+++.+||+++.+
T Consensus 51 ~~~y~~v~~~ekeg~~i~~------g~lPt~~eVe~Fl~~v~~ 87 (105)
T PF09702_consen 51 GRRYIAVIVKEKEGNYIIV------GYLPTDEEVEDFLDDVER 87 (105)
T ss_pred CccccceeeccCCCCEEec------CCCCChHHHHHHHHHHHH
Confidence 3556764444445666665 344578999999999764
No 461
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=23.00 E-value=3.2e+02 Score=20.21 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=35.3
Q ss_pred CCCeEEEEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc
Q 017126 59 SFDYILVDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK 105 (377)
Q Consensus 59 ~~~~~~v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~ 105 (377)
++++++|-=.|+.|+.-. -...+.++.+++...+ +.+...-|.+
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcnq 63 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCNQ 63 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBST
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehHH
Confidence 668888888899999887 6668888888887543 8888888854
No 462
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=22.91 E-value=3.6e+02 Score=22.61 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=31.0
Q ss_pred chhhhhhhcCCCCCCeEEEEcCCCCCcccccCCCCHHHHHHHHH
Q 017126 205 FSEDTMVLYDFDKVPALVALQPSYNEHNIFYGPFDEEFLEEFIK 248 (377)
Q Consensus 205 ~~~~~~~~~~v~~~P~l~~~~~~~~~~~~~~g~~~~~~l~~fi~ 248 (377)
.+..+.+.|+|+..|++|+... .......|..+...-.+.+.
T Consensus 150 IDP~lF~~F~I~~VPafVv~C~--~~yD~I~GNIsl~~ALe~iA 191 (212)
T PRK13730 150 IDPTLFSQYGIRSVPALVVFCS--QGYDIIRGNLRVGQALEKVA 191 (212)
T ss_pred ECHHHHHhcCCccccEEEEEcC--CCCCEEEecccHHHHHHHHH
Confidence 5789999999999999999865 34456678888554444443
No 463
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=22.79 E-value=1.9e+02 Score=23.59 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=31.2
Q ss_pred CCCeEEEEEEC-CCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeC
Q 017126 59 SFDYILVDFYA-PWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDA 103 (377)
Q Consensus 59 ~~~~~~v~f~~-~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~ 103 (377)
.+++++..||. ++---|-.-.-.|...+.++++.+..|....+|.
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS 77 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDS 77 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccc
Confidence 44788888883 3444455556678888888888776777777774
No 464
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=22.64 E-value=4.5e+02 Score=21.79 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=32.6
Q ss_pred CcEEEEE-eccchhhHHhhcCCCC-----CCCCCeEEEEeCCCCceec-cCCCCCCcccchhhHHHHHHHH
Q 017126 302 ELVFCYV-GIKQFADFADTFEANK-----KSKLPKMVVWDGNENYLTV-IGSESIDEEDQGSQISRFLEGY 365 (377)
Q Consensus 302 ~~~f~~v-d~~~~~~~~~~~gi~~-----~~~~P~l~i~~~~~~~~~~-~~~~~~~~~~t~e~i~~Fi~~~ 365 (377)
++.|-.+ |. ...+++.||+.. +...|+.+|++++++.... .+. .....+.+++.+.|+.+
T Consensus 87 ~~~fpil~D~--~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~--~~~gr~~~ell~~l~~l 153 (203)
T cd03016 87 EIPFPIIADP--DREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYP--ATTGRNFDEILRVVDAL 153 (203)
T ss_pred CCceeEEECc--hHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecC--CCCCCCHHHHHHHHHHH
Confidence 3555443 43 267888998721 1234679999988643322 111 12223456676766653
No 465
>PF09345 DUF1987: Domain of unknown function (DUF1987); InterPro: IPR018530 This family of proteins are functionally uncharacterised.
Probab=22.61 E-value=3.1e+02 Score=19.92 Aligned_cols=40 Identities=10% Similarity=0.118 Sum_probs=28.9
Q ss_pred EEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEeccc
Q 017126 273 IVLAIVEDETEEKSQKLVTTLKAAASANRELVFCYVGIKQ 312 (377)
Q Consensus 273 ~~i~~~~~~~~~~~~~~~~~l~~~a~~~~~~~f~~vd~~~ 312 (377)
+-+.+++.++.+..-.+.+.|++++++...+...|.--.+
T Consensus 49 ~~L~YfNTSSsk~l~~i~~~Le~~~~~g~~V~v~Wyyd~d 88 (99)
T PF09345_consen 49 FKLSYFNTSSSKALMDIFDLLEDAAQKGGKVTVNWYYDED 88 (99)
T ss_pred EEEEEEecHhHHHHHHHHHHHHHHHhcCCcEEEEEEECCC
Confidence 3345677777888888888898887777777777764433
No 466
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=22.41 E-value=1.5e+02 Score=20.94 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=22.4
Q ss_pred HHHHhCCC-cEEEEEeccchhhHHhhcCC
Q 017126 295 AAASANRE-LVFCYVGIKQFADFADTFEA 322 (377)
Q Consensus 295 ~~a~~~~~-~~f~~vd~~~~~~~~~~~gi 322 (377)
.+.++|+. .+|+|+.....-++++.+|-
T Consensus 51 ~~l~~Y~~l~N~V~~~N~~HIRfLk~lGA 79 (86)
T PF11090_consen 51 KMLKQYPVLWNFVWVGNKSHIRFLKSLGA 79 (86)
T ss_pred HHHHHhhheeEEEEeCCHHHHHHHHhcCc
Confidence 44455666 88999999888999999986
No 467
>PHA02151 hypothetical protein
Probab=22.39 E-value=50 Score=25.92 Aligned_cols=16 Identities=31% Similarity=0.729 Sum_probs=12.5
Q ss_pred cCCCeEEEEEECCCCh
Q 017126 58 SSFDYILVDFYAPWCG 73 (377)
Q Consensus 58 ~~~~~~~v~f~~~~C~ 73 (377)
+.+.--+|+||..||.
T Consensus 201 nr~h~~~v~fy~kwct 216 (217)
T PHA02151 201 NRNHDRYVHFYKKWCT 216 (217)
T ss_pred cccCceEEEEehhhcc
Confidence 3445678999999995
No 468
>PRK10853 putative reductase; Provisional
Probab=22.22 E-value=1e+02 Score=23.13 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=14.5
Q ss_pred EEEEECCCChhHhhHHHHHH
Q 017126 64 LVDFYAPWCGHCKRLAPQLD 83 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~ 83 (377)
+..|+.|.|..|++...-++
T Consensus 2 i~iy~~~~C~t~rkA~~~L~ 21 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLE 21 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHH
Confidence 34677899999988755444
No 469
>COG1307 DegV Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.93 E-value=2.9e+02 Score=24.56 Aligned_cols=39 Identities=23% Similarity=0.159 Sum_probs=27.8
Q ss_pred eCCcchhhHhhcCCCcCCEEEEEeCCeeEeecC-CCCHHHHH
Q 017126 102 DADKYSRLASKQEIDAFPTLKIFMHGIPTEYYG-PRKAELLV 142 (377)
Q Consensus 102 d~~~~~~~~~~~~i~~~P~~~~~~~g~~~~y~g-~~~~~~i~ 142 (377)
.|+-.+++.++++|..+|--+.+.+.... ++ ..+.+.+.
T Consensus 10 t~dl~~~~~~~~~I~vlPL~V~~~g~~y~--D~~~l~~~~~~ 49 (282)
T COG1307 10 TADLPPELAEKLDITVLPLSVIIDGESYF--DGVELSPDQFY 49 (282)
T ss_pred CCCCCHHHHHhCCeEEEeEEEEECCEEee--ccccCCHHHHH
Confidence 45667899999999999988888775433 33 35666543
No 470
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=21.82 E-value=2.6e+02 Score=22.36 Aligned_cols=52 Identities=10% Similarity=-0.003 Sum_probs=31.2
Q ss_pred HHHhhcchhhhhhhcCCC------CCCeEEEEcCCCCCcccccC----CCCHHHHHHHHHhh
Q 017126 199 FAVAKDFSEDTMVLYDFD------KVPALVALQPSYNEHNIFYG----PFDEEFLEEFIKQN 250 (377)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~------~~P~l~~~~~~~~~~~~~~g----~~~~~~l~~fi~~~ 250 (377)
|.+..+.+..+.+.|++. ..|+.+++.+++.-...+.+ ..+.+++.+.|+..
T Consensus 95 f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 95 FPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred eeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 333344556677778775 35788888876544444422 23466777777654
No 471
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=21.45 E-value=1.1e+02 Score=24.43 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=10.4
Q ss_pred CCCCchhHHHHHHHHHHHHH
Q 017126 1 MRGMSKGRIWILLCLLLLTG 20 (377)
Q Consensus 1 ~~~m~~~~~~~~~~~~~l~~ 20 (377)
|...+++|+++++++++.++
T Consensus 1 M~~~~~rRl~~~~~~~~~~~ 20 (160)
T PRK13165 1 MNPRRKKRLWLACAVLAGLA 20 (160)
T ss_pred CCccchhhHHHHHHHHHHHH
Confidence 44455667655555444443
No 472
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=21.25 E-value=4.3e+02 Score=21.03 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=25.8
Q ss_pred hhHHhhcCCCCCCC-------CCeEEEEeCCCCceeccCCCCCCcccchhhHHHHHH
Q 017126 314 ADFADTFEANKKSK-------LPKMVVWDGNENYLTVIGSESIDEEDQGSQISRFLE 363 (377)
Q Consensus 314 ~~~~~~~gi~~~~~-------~P~l~i~~~~~~~~~~~~~~~~~~~~t~e~i~~Fi~ 363 (377)
..+++.||+ .... .|+.++++.+++..+-.-......+...+.+.++++
T Consensus 111 ~~~~~~~gv-~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 111 HSFGKAYGV-AIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred cHHHHHhCC-eecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 478888888 2221 238889998765332211111233344556655543
No 473
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=21.16 E-value=1.4e+02 Score=22.81 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=14.7
Q ss_pred EEEEECCCChhHhhHHHHHH
Q 017126 64 LVDFYAPWCGHCKRLAPQLD 83 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~ 83 (377)
+..++.|.|..|++...-++
T Consensus 3 i~iY~~p~Cst~RKA~~~L~ 22 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALK 22 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHH
Confidence 45677899999988754443
No 474
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=20.78 E-value=1.7e+02 Score=19.07 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHhhCCCcccccChhhHHhhhcCCC
Q 017126 236 GPFDEEFLEEFIKQNFLPLSVPINQDTLNLLKDDKR 271 (377)
Q Consensus 236 g~~~~~~l~~fi~~~~~p~~~~l~~~~~~~~~~~~~ 271 (377)
.++..+++..|++.+..+...+++...+..+++.+.
T Consensus 23 ePI~L~el~~~L~~~g~~~~~~~~~~~l~~~lD~~g 58 (64)
T PF09494_consen 23 EPINLEELHAWLKASGIGFDRKVDPSKLKEWLDSQG 58 (64)
T ss_pred CCccHHHHHHHHHHcCCCccceeCHHHHHHHHHHCC
Confidence 356788999999999999999999999998887543
No 475
>PRK10026 arsenate reductase; Provisional
Probab=20.62 E-value=1.3e+02 Score=23.51 Aligned_cols=20 Identities=15% Similarity=0.418 Sum_probs=14.6
Q ss_pred EEEEECCCChhHhhHHHHHH
Q 017126 64 LVDFYAPWCGHCKRLAPQLD 83 (377)
Q Consensus 64 ~v~f~~~~C~~C~~~~~~~~ 83 (377)
+..++.|.|..|++...-++
T Consensus 4 i~iY~~p~Cst~RKA~~wL~ 23 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIR 23 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHH
Confidence 45677899999988755443
No 476
>PRK10540 lipoprotein; Provisional
Probab=20.27 E-value=1e+02 Score=20.94 Aligned_cols=6 Identities=50% Similarity=0.146 Sum_probs=2.4
Q ss_pred CCCCch
Q 017126 1 MRGMSK 6 (377)
Q Consensus 1 ~~~m~~ 6 (377)
|++|++
T Consensus 1 ~~~~~k 6 (72)
T PRK10540 1 MFVTSK 6 (72)
T ss_pred CchHHH
Confidence 333444
No 477
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=20.05 E-value=2.6e+02 Score=18.02 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=30.2
Q ss_pred EEEECCCChhHhhHHHHHHHHHHHhhcCCCCeEEEEEeCCc----chhhHhhcCCCcCCEEEE
Q 017126 65 VDFYAPWCGHCKRLAPQLDEAAPILAKLKEPIVIAKVDADK----YSRLASKQEIDAFPTLKI 123 (377)
Q Consensus 65 v~f~~~~C~~C~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~----~~~~~~~~~i~~~P~~~~ 123 (377)
.+|+.+.|+.|++..-.+.... -++....++... .+++.+...-..+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLG-------IPYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcC-------CCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 4677899999987654433322 224455555422 234444445567899874
Done!