BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017127
(377 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HIH|A Chain A, Crystal Structure Of Staphylococcus Hyicus Lipase
pdb|2HIH|B Chain B, Crystal Structure Of Staphylococcus Hyicus Lipase
Length = 431
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 127/299 (42%), Gaps = 47/299 (15%)
Query: 47 KPNVNVIEVKQEPPYVPTAKHTIDANTLPPIVLVHGIXXXXXXXXXXXSYFAGAEKKDER 106
KP V + P P K P V VHG + G K + R
Sbjct: 33 KPTVKAAPEAVQNPENPKNK--------DPFVFVHGFTGFVGEVAAKGENYWGGTKANLR 84
Query: 107 VLVPDLG---------SLTSIYDRARELFYYLKGGKVDYGEEHSKACGHSQFGRVYEQGH 157
+ G +L S ++RA EL+YYLKGG+VDYG HS+ GH ++G+ YE G
Sbjct: 85 NHLRKAGYETYEASVSALASNHERAVELYYYLKGGRVDYGAAHSEKYGHERYGKTYE-GV 143
Query: 158 YPEWDEDHPIHFVGHSAGAQVVRVLQQML--ADKAFKGYENT------------SENWVL 203
+W HP+HF+GHS G Q +R+L+ L DKA Y+ +N V
Sbjct: 144 LKDWKPGHPVHFIGHSMGGQTIRLLEHYLRFGDKAEIAYQQQHGGIISELFKGGQDNMVT 203
Query: 204 SITSLSGAFNGTTRTYLDGMQPEDGRTMKPICLLQLCRIGVIIYDWLDIVWLKDYYNFGF 263
SIT+++ NGT + G P I I+Y + + +FG
Sbjct: 204 SITTIATPHNGTHASDDIGNTP---------------TIRNILYSFAQMSSHLGTIDFGM 248
Query: 264 DHFNMSWKKMGIRGLLDCLMGNTGPFASGDWILPDLTIQGSLQLNCHLQTFPNTYYFSY 322
DH+ K + + + + S D L DLT +G+ ++N + PN YY +Y
Sbjct: 249 DHWGFKRKDGESLTDYNKRIAESKIWDSEDTGLYDLTREGAEKINQKTELNPNIYYKTY 307
>pdb|2Z5G|A Chain A, Crystal Structure Of T1 Lipase F16l Mutant
pdb|2Z5G|B Chain B, Crystal Structure Of T1 Lipase F16l Mutant
Length = 387
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 122/280 (43%), Gaps = 40/280 (14%)
Query: 76 PIVLVHGIXXXXXXXXXXXSYFAGAEKKDE--------RVLVPDLGSLTSIYDRARELFY 127
PIVL+HG+ Y+ G E R +G L+S +DRA E +
Sbjct: 8 PIVLLHGLTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWDRACEAYA 67
Query: 128 YLKGGKVDYGEEHSKACGHSQFGRVYEQGHYPEWDEDHPIHFVGHSAGAQVVRVLQQML- 186
L GG VDYG H+ GH++FGR Y G PE IH + HS G Q R+L +L
Sbjct: 68 QLVGGTVDYGAAHAAKHGHARFGRTYP-GLLPELKRGGRIHIIAHSQGGQTARMLVSLLE 126
Query: 187 ----ADKAFKGYENTS--------ENWVLSITSLSGAFNGTTRT----YLDGMQPEDGRT 230
++ + N S ++VLS+T+++ +GTT + D
Sbjct: 127 NGSQEEREYAKAHNVSLSPLFEGGHHFVLSVTTIATPHDGTTLVNMVDFTDRFFDLQKAV 186
Query: 231 MKPICLLQLCRIGVIIYDW-LDIVWLKDYYNFGFDHFNMSWKKMGIRGLLDCLMGNTGPF 289
++ + +YD+ LD L+ FDH+ K+ + +
Sbjct: 187 LEAAAVASNVPYTSQVYDFKLDQWGLRRQPGESFDHYFERLKRSPV-------------W 233
Query: 290 ASGDWILPDLTIQGSLQLNCHLQTFPNTYYFSYATKRTRK 329
S D DL++ G+ +LN +Q PNTYY S++T+RT +
Sbjct: 234 TSTDTARYDLSVSGAEKLNQWVQASPNTYYLSFSTERTYR 273
>pdb|3AUK|A Chain A, Crystal Structure Of A Lipase From Geobacillus Sp. Sbs-4s
Length = 389
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 80/280 (28%), Positives = 121/280 (43%), Gaps = 40/280 (14%)
Query: 76 PIVLVHGIXXXXXXXXXXXSYFAGAEKKDE--------RVLVPDLGSLTSIYDRARELFY 127
PIVL+HG Y+ G E R +G L+S +DRA E +
Sbjct: 10 PIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWDRACEAYA 69
Query: 128 YLKGGKVDYGEEHSKACGHSQFGRVYEQGHYPEWDEDHPIHFVGHSAGAQVVRVLQQML- 186
L GG VDYG H+ GH++FGR Y G PE IH + HS G Q R+L +L
Sbjct: 70 QLVGGTVDYGAAHAAKHGHARFGRTY-LGLLPELKRGGRIHIIAHSQGGQTARMLVSLLE 128
Query: 187 ----ADKAFKGYENTS--------ENWVLSITSLSGAFNGTTRT----YLDGMQPEDGRT 230
++ + N S ++VLS+T+++ +GTT + D
Sbjct: 129 NGSQEEREYAKAHNVSLSPLFEGGHHFVLSVTTIATPHDGTTLVNMVDFTDRFFDLQKAV 188
Query: 231 MKPICLLQLCRIGVIIYDW-LDIVWLKDYYNFGFDHFNMSWKKMGIRGLLDCLMGNTGPF 289
++ + +YD+ LD L+ FDH+ K+ + +
Sbjct: 189 LEAAAVASNVPYTSQVYDFKLDQWGLRRQPGESFDHYFERLKRSPV-------------W 235
Query: 290 ASGDWILPDLTIQGSLQLNCHLQTFPNTYYFSYATKRTRK 329
S D DL++ G+ +LN +Q PNTYY S+AT+RT +
Sbjct: 236 TSTDTARYDLSVSGAEKLNQWVQASPNTYYLSFATERTYR 275
>pdb|2DSN|A Chain A, Crystal Structure Of T1 Lipase
pdb|2DSN|B Chain B, Crystal Structure Of T1 Lipase
Length = 387
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 121/280 (43%), Gaps = 40/280 (14%)
Query: 76 PIVLVHGIXXXXXXXXXXXSYFAGAEKKDE--------RVLVPDLGSLTSIYDRARELFY 127
PIVL+HG Y+ G E R +G L+S +DRA E +
Sbjct: 8 PIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWDRACEAYA 67
Query: 128 YLKGGKVDYGEEHSKACGHSQFGRVYEQGHYPEWDEDHPIHFVGHSAGAQVVRVLQQML- 186
L GG VDYG H+ GH++FGR Y G PE IH + HS G Q R+L +L
Sbjct: 68 QLVGGTVDYGAAHAAKHGHARFGRTYP-GLLPELKRGGRIHIIAHSQGGQTARMLVSLLE 126
Query: 187 ----ADKAFKGYENTS--------ENWVLSITSLSGAFNGTTRT----YLDGMQPEDGRT 230
++ + N S ++VLS+T+++ +GTT + D
Sbjct: 127 NGSQEEREYAKAHNVSLSPLFEGGHHFVLSVTTIATPHDGTTLVNMVDFTDRFFDLQKAV 186
Query: 231 MKPICLLQLCRIGVIIYDW-LDIVWLKDYYNFGFDHFNMSWKKMGIRGLLDCLMGNTGPF 289
++ + +YD+ LD L+ FDH+ K+ + +
Sbjct: 187 LEAAAVASNVPYTSQVYDFKLDQWGLRRQPGESFDHYFERLKRSPV-------------W 233
Query: 290 ASGDWILPDLTIQGSLQLNCHLQTFPNTYYFSYATKRTRK 329
S D DL++ G+ +LN +Q PNTYY S++T+RT +
Sbjct: 234 TSTDTARYDLSVSGAEKLNQWVQASPNTYYLSFSTERTYR 273
>pdb|3UMJ|A Chain A, Crystal Structure Of D311e Lipase
pdb|3UMJ|B Chain B, Crystal Structure Of D311e Lipase
Length = 387
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 121/280 (43%), Gaps = 40/280 (14%)
Query: 76 PIVLVHGIXXXXXXXXXXXSYFAGAEKKDE--------RVLVPDLGSLTSIYDRARELFY 127
PIVL+HG Y+ G E R +G L+S +DRA E +
Sbjct: 8 PIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWDRACEAYA 67
Query: 128 YLKGGKVDYGEEHSKACGHSQFGRVYEQGHYPEWDEDHPIHFVGHSAGAQVVRVLQQML- 186
L GG VDYG H+ GH++FGR Y G PE IH + HS G Q R+L +L
Sbjct: 68 QLVGGTVDYGAAHAAKHGHARFGRTYP-GLLPELKRGGRIHIIAHSQGGQTARMLVSLLE 126
Query: 187 ----ADKAFKGYENTS--------ENWVLSITSLSGAFNGTTRT----YLDGMQPEDGRT 230
++ + N S ++VLS+T+++ +GTT + D
Sbjct: 127 NGSQEEREYAKAHNVSLSPLFEGGHHFVLSVTTIATPHDGTTLVNMVDFTDRFFDLQKAV 186
Query: 231 MKPICLLQLCRIGVIIYDW-LDIVWLKDYYNFGFDHFNMSWKKMGIRGLLDCLMGNTGPF 289
++ + +YD+ LD L+ FDH+ K+ + +
Sbjct: 187 LEAAAVASNVPYTSQVYDFKLDQWGLRRQPGESFDHYFERLKRSPV-------------W 233
Query: 290 ASGDWILPDLTIQGSLQLNCHLQTFPNTYYFSYATKRTRK 329
S D DL++ G+ +LN +Q PNTYY S++T+RT +
Sbjct: 234 TSTDTARYDLSVSGAEKLNQWVQASPNTYYLSFSTERTYR 273
>pdb|1JI3|A Chain A, Crystal Structure Of The First Thermostable Bacterial
Lipase From Bacillus Stearothermophilus
pdb|1JI3|B Chain B, Crystal Structure Of The First Thermostable Bacterial
Lipase From Bacillus Stearothermophilus
Length = 388
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 120/280 (42%), Gaps = 40/280 (14%)
Query: 76 PIVLVHGIXXXXXXXXXXXSYFAGAEKKDE--------RVLVPDLGSLTSIYDRARELFY 127
PIVL+HG Y+ G E R +G L+S +DR E +
Sbjct: 9 PIVLLHGFTGWGREEMFGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWDRVCEAYV 68
Query: 128 YLKGGKVDYGEEHSKACGHSQFGRVYEQGHYPEWDEDHPIHFVGHSAGAQVVRVLQQML- 186
L GG VDYG H+ GH++FGR Y G PE IH + HS G Q R+L +L
Sbjct: 69 QLVGGTVDYGAAHAAKHGHARFGRTYP-GLLPELKRGGRIHIIAHSQGGQTARMLVSLLE 127
Query: 187 ----ADKAFKGYENTS--------ENWVLSITSLSGAFNGTTRT----YLDGMQPEDGRT 230
++ + N S ++VLS+T+++ +GTT + D
Sbjct: 128 NGSQEEREYAKAHNVSLSPLFEGGHHFVLSVTTIATPHDGTTLVNMVDFTDRFFDLQKAV 187
Query: 231 MKPICLLQLCRIGVIIYDW-LDIVWLKDYYNFGFDHFNMSWKKMGIRGLLDCLMGNTGPF 289
++ + +YD+ LD L+ FDH+ K+ + +
Sbjct: 188 LEAAAVASNVPYTSQVYDFKLDQWGLRRQPGESFDHYFERLKRSPV-------------W 234
Query: 290 ASGDWILPDLTIQGSLQLNCHLQTFPNTYYFSYATKRTRK 329
S D DL++ G+ +LN +Q PNTYY S++T+RT +
Sbjct: 235 TSTDTARYDLSVSGAEKLNQWVQASPNTYYLSFSTERTYR 274
>pdb|1KU0|A Chain A, Structure Of The Bacillus Stearothermophilus L1 Lipase
pdb|1KU0|B Chain B, Structure Of The Bacillus Stearothermophilus L1 Lipase
Length = 388
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 120/280 (42%), Gaps = 40/280 (14%)
Query: 76 PIVLVHGIXXXXXXXXXXXSYFAGAEKKDE--------RVLVPDLGSLTSIYDRARELFY 127
PIVL+HG Y+ G E R +G L+S +DRA E +
Sbjct: 9 PIVLLHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWDRACEAYA 68
Query: 128 YLKGGKVDYGEEHSKACGHSQFGRVYEQGHYPEWDEDHPIHFVGHSAGAQVVRVLQQMLA 187
L GG VDYG H+ GH++FGR Y G PE +H + HS G Q R+L +L
Sbjct: 69 QLVGGTVDYGAAHAAKHGHARFGRTY-PGLLPELKRGGRVHIIAHSQGGQTARMLVSLLE 127
Query: 188 DKAFKGYENTSEN-------------WVLSITSLSGAFNGTTRT----YLDGMQPEDGRT 230
+ + + E E+ +VLS+T+++ +GTT + D
Sbjct: 128 NGSQEEREYAKEHNVSLSPLFEGGHRFVLSVTTIATPHDGTTLVNMVDFTDRFFDLQKAV 187
Query: 231 MKPICLLQLCRIGVIIYDW-LDIVWLKDYYNFGFDHFNMSWKKMGIRGLLDCLMGNTGPF 289
++ + IYD+ LD L+ FDH+ K+ + +
Sbjct: 188 LEAAAVASNAPYTSEIYDFKLDQWGLRREPGESFDHYFERLKRSPV-------------W 234
Query: 290 ASGDWILPDLTIQGSLQLNCHLQTFPNTYYFSYATKRTRK 329
S D DL++ G+ LN ++ PNTYY S++T+RT +
Sbjct: 235 TSTDTARYDLSVPGAETLNRWVKASPNTYYLSFSTERTYR 274
>pdb|2W22|A Chain A, Activation Mechanism Of Bacterial Thermoalkalophilic
Lipases
Length = 389
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 120/280 (42%), Gaps = 40/280 (14%)
Query: 76 PIVLVHGIXXXXXXXXXXXSYFAGAEKKDE--------RVLVPDLGSLTSIYDRARELFY 127
PIVL+HG Y+ G E R +G L+S +DRA E +
Sbjct: 10 PIVLLHGFTGWGREEMLGFKYWGGVRGDIEQWLNDNGYRTYTLAVGPLSSNWDRACEAYA 69
Query: 128 YLKGGKVDYGEEHSKACGHSQFGRVYEQGHYPEWDEDHPIHFVGHSAGAQVVRVLQQML- 186
L GG VDYG H+ GH++FGR Y G PE +H + HS G Q R+L +L
Sbjct: 70 QLVGGTVDYGAAHAAKHGHARFGRTYP-GLLPELKRGGRVHIIAHSQGGQTARMLVSLLE 128
Query: 187 ----ADKAFKGYENTS--------ENWVLSITSLSGAFNGTTRTYLDGMQPE--DGRTMK 232
++ + N S ++VLS+T+++ +GTT + D +
Sbjct: 129 NGSQEEREYAKAHNVSLSPLFEGGHHFVLSVTTIATPHDGTTLVNMVDFTDRFFDLQKAV 188
Query: 233 PICLLQLCRIGVI--IYDW-LDIVWLKDYYNFGFDHFNMSWKKMGIRGLLDCLMGNTGPF 289
+ +YD+ LD L+ FDH+ K+ + +
Sbjct: 189 LKAAAVASNVPYTSQVYDFKLDQWGLRRQPGESFDHYFERLKRSPV-------------W 235
Query: 290 ASGDWILPDLTIQGSLQLNCHLQTFPNTYYFSYATKRTRK 329
S D DL+I G+ +LN +Q PNTYY S++T+RT +
Sbjct: 236 TSTDTARYDLSIPGAEKLNQWVQASPNTYYLSFSTERTHR 275
>pdb|1B71|A Chain A, Rubrerythrin
pdb|1DVB|A Chain A, Rubrerythrin
pdb|1JYB|A Chain A, Crystal Structure Of Rubrerythrin
pdb|1LKM|A Chain A, Crystal Structure Of Desulfovibrio Vulgaris Rubrerythrin
All-Iron(Iii) Form
pdb|1LKO|A Chain A, Crystal Structure Of Desulfovibrio Vulgaris Rubrerythrin
All-iron(ii) Form
pdb|1LKP|A Chain A, Crystal Structure Of Desulfovibrio Vulgaris Rubrerythrin
All-iron(ii) Form, Azide Adduct
pdb|1QYB|A Chain A, X-Ray Crystal Structure Of Desulfovibrio Vulgaris
Rubrerythrin With Zinc Substituted Into The [fe(Scys)4]
Site And Alternative Diiron Site Structures
pdb|1S2Z|A Chain A, X-Ray Crystal Structure Of Desulfovibrio Vulgaris
Rubrerythrin With Displacement Of Iron By Zinc At The
Diiron Site
pdb|1S30|A Chain A, X-Ray Crystal Structure Of Desulfovibrio Vulgaris
Rubrerythrin With Displacement Of Iron By Zinc At The
Diiron Site
Length = 191
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 95 SYFAGAEKKDERVLVPDLGSLTSIYDR--ARELFYYLKGGKVD 135
+YF G KKD V + D+ + T+ +R A+ LF +L+GG ++
Sbjct: 28 NYFGGQAKKDGFVQISDIFAETADQEREHAKRLFKFLEGGDLE 70
>pdb|1RYT|A Chain A, Rubrerythrin
Length = 190
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 95 SYFAGAEKKDERVLVPDLGSLTSIYDR--ARELFYYLKGGKVD 135
+YF G KKD V + D+ + T+ +R A+ LF +L+GG ++
Sbjct: 27 NYFGGQAKKDGFVQISDIFAETADQEREHAKRLFKFLEGGDLE 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,306,436
Number of Sequences: 62578
Number of extensions: 529052
Number of successful extensions: 1067
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 10
length of query: 377
length of database: 14,973,337
effective HSP length: 100
effective length of query: 277
effective length of database: 8,715,537
effective search space: 2414203749
effective search space used: 2414203749
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)