BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017128
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C5I|A Chain A, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|B Chain B, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|C Chain C, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|D Chain D, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
Length = 369
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
Query: 307 ICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVIK 366
ICL V WN H ++ +N +KQI G TN F+VGLK + N N +
Sbjct: 20 ICLEKVPEWN-----HFTE--DNLRVKQILSGLTNQL----FEVGLKEETANNYNSIRTR 68
Query: 367 LL 368
+L
Sbjct: 69 VL 70
>pdb|4DI1|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
pdb|4DI1|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
pdb|4DI1|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa17 From
Mycobacterium Marinum
Length = 277
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 323 VSKPPENAYIKQIFEGFTNVAEELGFK 349
VS+PP NA +Q++ A+ELG +
Sbjct: 39 VSRPPTNAMTRQVYREIVAAADELGRR 65
>pdb|2W3D|A Chain A, Structure Of The First Gaf Domain Of Mycobacterium
Tuberculosis Doss
pdb|2W3D|B Chain B, Structure Of The First Gaf Domain Of Mycobacterium
Tuberculosis Doss
Length = 153
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 56 RLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRK 99
RL ++ H S+ F P RT + +PVR + SF T Y++ K
Sbjct: 75 RLDDVSAHPASIGFPPYHPPXRTFLGVPVRVRDESFGTLYLTDK 118
>pdb|2Y8H|A Chain A, Structure Of The First Gaf Domain E87g Mutant Of
Mycobacterium Tuberculosis Doss
pdb|2Y8H|B Chain B, Structure Of The First Gaf Domain E87g Mutant Of
Mycobacterium Tuberculosis Doss
Length = 153
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 56 RLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRK 99
RL ++ H S+ F P RT + +PVR + SF T Y++ K
Sbjct: 75 RLDDVSAHPASIGFPPYHPPMRTFLGVPVRVRDESFGTLYLTDK 118
>pdb|2W3E|A Chain A, Oxidized Structure Of The First Gaf Domain Of
Mycobacterium Tuberculosis Doss
pdb|2W3E|B Chain B, Oxidized Structure Of The First Gaf Domain Of
Mycobacterium Tuberculosis Doss
pdb|2W3F|A Chain A, Reduced Structure Of The First Gaf Domain Of Mycobacterium
Tuberculosis Doss
pdb|2W3F|B Chain B, Reduced Structure Of The First Gaf Domain Of Mycobacterium
Tuberculosis Doss
pdb|2W3G|A Chain A, Air-Oxidized Structure Of The First Gaf Domain Of
Mycobacterium Tuberculosis Doss
pdb|2W3G|B Chain B, Air-Oxidized Structure Of The First Gaf Domain Of
Mycobacterium Tuberculosis Doss
pdb|2W3H|A Chain A, Cyanide Bound Structure Of The First Gaf Domain Of
Mycobacterium Tuberculosis Doss
pdb|2W3H|B Chain B, Cyanide Bound Structure Of The First Gaf Domain Of
Mycobacterium Tuberculosis Doss
Length = 153
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 56 RLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRK 99
RL ++ H S+ F P RT + +PVR + SF T Y++ K
Sbjct: 75 RLDDVSAHPASIGFPPYHPPMRTFLGVPVRVRDESFGTLYLTDK 118
>pdb|2Y79|A Chain A, Structure Of The First Gaf Domain E87a Mutant Of
Mycobacterium Tuberculosis Doss
pdb|2Y79|B Chain B, Structure Of The First Gaf Domain E87a Mutant Of
Mycobacterium Tuberculosis Doss
Length = 153
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 56 RLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRK 99
RL ++ H S+ F P RT + +PVR + SF T Y++ K
Sbjct: 75 RLDDVSAHPASIGFPPYHPPMRTFLGVPVRVRDESFGTLYLTDK 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,459,985
Number of Sequences: 62578
Number of extensions: 392252
Number of successful extensions: 753
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 6
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)