BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017128
(376 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZJH2|NCLN_CHICK Nicalin OS=Gallus gallus GN=NCLN PE=2 SV=1
Length = 562
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 124/357 (34%), Positives = 194/357 (54%), Gaps = 38/357 (10%)
Query: 22 VFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGAD-LSRTVV 80
V +L+ +AA VYR+ QY++ G P+G+R A LN A ++ AD LSR V
Sbjct: 29 VLLLLGPPPAAEAAHESTVYRMQQYELGGQPYGTRSAVLNTEARTVE----ADVLSRRCV 84
Query: 81 MIPVRELNISFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKL 140
M+ R ++ S+ + + G ++ +LP ++VVK +E+E
Sbjct: 85 MM--RLVDFSYEQYQKALRQSAGAVVIILPRSI---------SSVPQDVVKQ-FMEIEPE 132
Query: 141 LVHAKLPYPVYFAFENDEIDAVLDDVKKNDATGQPA--------TATTGGYKLVIPIAEP 192
++ + PVYFA E+DE+ ++ + + A+ A TAT G+++V A+
Sbjct: 133 MLAMETIVPVYFAVEDDELLSIYEQTRAASASQGSASAAEVLLHTATANGFQMVTSGAQS 192
Query: 193 KKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALL 252
K + I +++G L GL + LPT+ IVA YD+FG AP LS G+DSNGSGV LL
Sbjct: 193 KAIHDWLIPSVEGRLTGLGGE----DLPTVVIVAHYDSFGVAPWLSHGADSNGSGVSVLL 248
Query: 253 EVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLR-SFDQR----LRESIDYAI 307
E+ARLFS LY+ +T YN+LF + GG +NY GT +WL + D L++++ + +
Sbjct: 249 ELARLFSRLYTYRRTHAGYNLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVL 308
Query: 308 CLNSVGSWNNELWIHVSKPPENAYIKQIF--EGFTNVAEEL-GFKVGLKHKKINISN 361
CL+++G N L +HVSKPP+ ++ F E VA + K + HKKIN++
Sbjct: 309 CLDTLGR-GNSLHLHVSKPPKEGTLQHAFLRELEMVVASQFPEVKFSMVHKKINLAE 364
>sp|Q6NZ07|NCLN_DANRE Nicalin-1 OS=Danio rerio GN=ncl1 PE=2 SV=1
Length = 572
Score = 177 bits (449), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 121/346 (34%), Positives = 189/346 (54%), Gaps = 36/346 (10%)
Query: 32 CDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISF 91
+AA VYR+ QYD+ G +GSR A LN A ++ LSR VM+ R + S+
Sbjct: 33 AEAAHEFSVYRMQQYDLQGQTYGSRNAILNTEARTVE---AEVLSRRCVMM--RLADFSY 87
Query: 92 VTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVY 151
+ + G ++ +LP +++V+ +ELE L+ + PVY
Sbjct: 88 EKYQKALRQSAGAVVIILPH---------NMSTLPQDIVQQ-FMELEPELLATETIVPVY 137
Query: 152 FAFENDEIDAVLDDVKKNDATGQPA--------TATTGGYKLVIPIAEPKKVASPTITNI 203
FA E++E+ ++ + + ++ + TAT G+++V A+ K V+ IT++
Sbjct: 138 FALEDEELLSIYTQTQISSSSQGSSSAAEVLLHTATANGFQMVTSGAQSKAVSDWAITSL 197
Query: 204 QGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYS 263
+G L G LPTI +VA YD+FG AP LS G+DSNGSGV LLE+ARLFS LYS
Sbjct: 198 EGRLTG----SGGEDLPTIVLVAHYDSFGVAPWLSYGADSNGSGVAILLELARLFSRLYS 253
Query: 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLR-SFDQR----LRESIDYAICLNSVGSWNNE 318
+T YN+LF L+ GG +NY GT +WL + D L++++ + +CL+++G+ +N
Sbjct: 254 YKRTHAGYNLLFFLSGGGKFNYQGTKRWLEDNLDHTDASLLQDNVAFVLCLDTLGNSDN- 312
Query: 319 LWIHVSKPPENAYIKQIF--EGFTNVAEEL-GFKVGLKHKKINISN 361
L +HVSKPP+ + E T VA + K + HKKIN+++
Sbjct: 313 LHLHVSKPPKEGSPQYTLLKELETVVAHQHPDLKFAMVHKKINLAD 358
>sp|Q5XIA1|NCLN_RAT Nicalin OS=Rattus norvegicus GN=Ncln PE=2 SV=1
Length = 563
Score = 176 bits (445), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/339 (34%), Positives = 186/339 (54%), Gaps = 38/339 (11%)
Query: 40 VYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGAD-LSRTVVMIPVRELNISFVTEYVSR 98
VYR+ QYD+ G P+G+R A LN A ++ AD LSR V++ R L+ S+ +
Sbjct: 48 VYRMQQYDLQGQPYGTRNAVLNTEARTV----DADVLSRRCVLM--RLLDFSYEHYQKAL 101
Query: 99 KHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFENDE 158
+ G ++ +LP ++VV+ +E+E ++ + PVYFA E++
Sbjct: 102 RQSAGAVVIILPR---------AMAAVPQDVVRQ-FMEIEPEMLAMETVVPVYFAVEDEA 151
Query: 159 IDAVLDDVKKNDATGQPA--------TATTGGYKLVIPIAEPKKVASPTITNIQGWLQGL 210
+ ++ + + A+ A TAT G+++V A+ + V+ IT+++G L GL
Sbjct: 152 LLSIYEQTQAASASQGSASAAEVLLHTATANGFQMVTSGAQSQAVSDWLITSVEGRLTGL 211
Query: 211 KADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGR 270
+ LPTI IVA YD FG AP LS+G+DSNGSG+ LLE+ARLFS LY+ +T
Sbjct: 212 GGED----LPTIVIVAHYDAFGVAPWLSLGADSNGSGISVLLELARLFSRLYTYKRTHAA 267
Query: 271 YNILFGLTSGGPYNYNGTHKWLR-SFDQR----LRESIDYAICLNSVGSWNNELWIHVSK 325
YN+LF + GG +NY GT +WL S D L++++ + +CL++VG + L +HVSK
Sbjct: 268 YNLLFFASGGGKFNYQGTKRWLEDSLDHTDSSLLQDNVAFVLCLDTVGR-GSHLRLHVSK 326
Query: 326 PPENAYIKQIFEGFTNVAEELGF---KVGLKHKKINISN 361
PP ++ +F + F + HKKIN+++
Sbjct: 327 PPREGTLQHVFLRELEMVAAHQFPDVSFSMVHKKINLAD 365
>sp|Q8VCM8|NCLN_MOUSE Nicalin OS=Mus musculus GN=Ncln PE=2 SV=2
Length = 563
Score = 175 bits (443), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 187/339 (55%), Gaps = 38/339 (11%)
Query: 40 VYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGAD-LSRTVVMIPVRELNISFVTEYVSR 98
VYR+ QYD+ G P+G+R A LN A ++ AD LSR V++ R L+ S+ +
Sbjct: 48 VYRMQQYDLQGQPYGTRNAVLNTEARTV----DADVLSRRCVLM--RLLDFSYEHYQKAL 101
Query: 99 KHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFENDE 158
+ G ++ +LP ++VV+ +E+E ++ + PVYFA E++
Sbjct: 102 RQSAGAVVIILPR---------AMAAVPQDVVRQ-FMEIEPEMLAMETVVPVYFAVEDEA 151
Query: 159 IDAVLDDVKKNDATGQPA--------TATTGGYKLVIPIAEPKKVASPTITNIQGWLQGL 210
+ ++ + + A+ A TAT G+++V A+ + V+ IT+++G L GL
Sbjct: 152 LLSIYEQTQAASASQGSASAAEVLLHTATANGFQMVTSGAQSQAVSDWLITSVEGRLTGL 211
Query: 211 KADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGR 270
+ LPTI IVA YD FG AP LS+G+DSNGSG+ LLE+ARLFS LY+ +T
Sbjct: 212 GGED----LPTIVIVAHYDAFGVAPWLSLGADSNGSGISVLLELARLFSRLYTYKRTHAA 267
Query: 271 YNILFGLTSGGPYNYNGTHKWLR-SFDQR----LRESIDYAICLNSVGSWNNELWIHVSK 325
YN+LF + GG +NY GT +WL S D L++++ + +CL++VG + L +HVSK
Sbjct: 268 YNLLFFASGGGKFNYQGTKRWLEDSLDHTDSSLLQDNVAFVLCLDTVGR-GSHLRLHVSK 326
Query: 326 PPENAYIKQIF--EGFTNVAEEL-GFKVGLKHKKINISN 361
PP ++ F E T A + + HKKIN+++
Sbjct: 327 PPREGTLQHAFLRELETVAAHQFPDVSFSMVHKKINLAD 365
>sp|Q969V3|NCLN_HUMAN Nicalin OS=Homo sapiens GN=NCLN PE=1 SV=2
Length = 563
Score = 172 bits (435), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 115/338 (34%), Positives = 182/338 (53%), Gaps = 36/338 (10%)
Query: 40 VYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRK 99
VYR+ QYD+ G P+G+R A LN A ++ LSR V++ R L+ S+ + +
Sbjct: 48 VYRMQQYDLQGQPYGTRNAVLNTEARTM---AAEVLSRRCVLM--RLLDFSYEQYQKALR 102
Query: 100 HPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFENDEI 159
G ++ +LP ++VV+ +E+E ++ + PVYFA E++ +
Sbjct: 103 QSAGAVVIILPR---------AMAAVPQDVVRQ-FMEIEPEMLAMETAVPVYFAVEDEAL 152
Query: 160 DAVLDDVKKNDATGQPA--------TATTGGYKLVIPIAEPKKVASPTITNIQGWLQGLK 211
++ + A+ A TAT G+++V + K V+ I +++G L GL
Sbjct: 153 LSIYKQTQAASASQGSASAAEVLLRTATANGFQMVTSGVQSKAVSDWLIASVEGRLTGLG 212
Query: 212 ADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRY 271
+ LPTI IVA YD FG AP LS+G+DSNGSGV LLE+ARLFS LY+ +T Y
Sbjct: 213 GED----LPTIVIVAHYDAFGVAPWLSLGADSNGSGVSVLLELARLFSRLYTYKRTHAAY 268
Query: 272 NILFGLTSGGPYNYNGTHKWLR-SFDQR----LRESIDYAICLNSVGSWNNELWIHVSKP 326
N+LF + GG +NY GT +WL + D L++++ + +CL++VG + L +HVSKP
Sbjct: 269 NLLFFASGGGKFNYQGTKRWLEDNLDHTDSSLLQDNVAFVLCLDTVGR-GSSLHLHVSKP 327
Query: 327 PENAYIKQIF--EGFTNVAEEL-GFKVGLKHKKINISN 361
P ++ F E T A + + + HK+IN++
Sbjct: 328 PREGTLQHAFLRELETVAAHQFPEVRFSMVHKRINLAE 365
>sp|Q90997|TFR1_CHICK Transferrin receptor protein 1 OS=Gallus gallus GN=TFRC PE=2 SV=2
Length = 776
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 11/112 (9%)
Query: 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFS 259
I NI G +QG + + I A D++G A + G+G LLE+AR+ S
Sbjct: 399 ILNIFGAIQGFEEPDR-----YVVIGAQRDSWGPGVAKA------GTGTAILLELARVIS 447
Query: 260 LLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311
+ N + R +I+F S G Y G +WL + L I L++
Sbjct: 448 DIVKNEGYKPRRSIIFASWSAGDYGAVGATEWLEGYSAMLHAKAFTYISLDA 499
>sp|P25152|BSAP_BACSU Aminopeptidase YwaD OS=Bacillus subtilis (strain 168) GN=ywaD PE=1
SV=2
Length = 455
Score = 35.0 bits (79), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 78/191 (40%), Gaps = 31/191 (16%)
Query: 175 PATATTGGYKLVIPIAEPKKVASPTITNIQGWLQGLKADGDANQLPTIAI---------- 224
P T G K+ IP+ KK +T + LKA + I I
Sbjct: 184 PMTPNLSGNKVGIPVVGIKKEDGEALTQQKEATLKLKAFTNQTSQNIIGIKKPKNIKHPD 243
Query: 225 ----VASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280
A YD+ +P G++ NGSG +LE+AR+ + S+ + R I FG
Sbjct: 244 IVYVTAHYDSVPFSP----GANDNGSGTSVMLEMARVLKSVPSDKEIR---FIAFGAEEL 296
Query: 281 GPYNYNGTHKWLRSFDQRLRESIDYAICLNSVG-SWN--NELWIHVSKPPENAYIKQIFE 337
G G+ ++ ++ + + L+ VG SW +EL+++ N ++E
Sbjct: 297 GLL---GSSHYVDHLSEKELKRSEVNFNLDMVGTSWEKASELYVNTLDGQSN----YVWE 349
Query: 338 GFTNVAEELGF 348
AE++GF
Sbjct: 350 SSRTAAEKIGF 360
>sp|A4WCV7|MNMC_ENT38 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Enterobacter sp. (strain 638) GN=mnmC
PE=3 SV=2
Length = 666
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
Query: 31 LCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAG--SLHFSPGADLSRTVVMIPVRELN 88
LC A V L Q V +G L SLNH G L F+ GAD + V++
Sbjct: 406 LCPAELTAAVINLAQSRGLAVHYGYHLDSLNHQQGDWQLRFNNGADAQHSSVVLANGHRI 465
Query: 89 ISFVTEYVSRKHPLGGMLFLLPEIFRLE 116
F +P+GG + +P +LE
Sbjct: 466 SDFSQTEKLPVYPVGGQVSHIPTTPQLE 493
>sp|Q9UP52|TFR2_HUMAN Transferrin receptor protein 2 OS=Homo sapiens GN=TFR2 PE=1 SV=1
Length = 801
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 197 SPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVAR 256
S I NI G ++G +++ D + I A D +G G+ + G LLE+ R
Sbjct: 407 STPINNIFGCIEG-RSEPDH----YVVIGAQRDAWGP------GAAKSAVGTAILLELVR 455
Query: 257 LFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295
FS + SN R R ++LF GG + G+ +WL +
Sbjct: 456 TFSSMVSN-GFRPRRSLLFISWDGGDFGSVGSTEWLEGY 493
>sp|Q9JKX3|TFR2_MOUSE Transferrin receptor protein 2 OS=Mus musculus GN=Tfr2 PE=2 SV=2
Length = 798
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 194 KVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLE 253
+V++P I+NI ++G A+ D + I A D +G G+ + G LLE
Sbjct: 400 RVSTP-ISNIFACIEGF-AEPDH----YVVIGAQRDAWGP------GAAKSAVGTAILLE 447
Query: 254 VARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295
+ R FS + SN R R ++LF GG + G +WL +
Sbjct: 448 LVRTFSSMVSN-GFRPRRSLLFISWDGGDFGSVGATEWLEGY 488
>sp|Q8GUM5|NICA_ARATH Nicastrin OS=Arabidopsis thaliana GN=At3g52640/At3g52650 PE=2 SV=1
Length = 676
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 217 NQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLL--YSNPKTRGRYNIL 274
N+ P + VAS DT S G+DS SG+VALL S + SN K + ++
Sbjct: 248 NRKPVVLTVASMDTASFFRDKSFGADSPISGLVALLGAVDALSRVDGISNLKKQ----LV 303
Query: 275 FGLTSGGPYNYNGTHKWLRSFD 296
F + +G + Y G+ ++L D
Sbjct: 304 FLVLTGETWGYLGSRRFLHELD 325
>sp|Q01499|POLG_BVDVS Genome polyprotein OS=Bovine viral diarrhea virus (strain SD-1) PE=3
SV=1
Length = 3898
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 47 DISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRKHPLGGML 106
D + VP + +ASL L +SPG D + V+ I + L +S+VT+Y K L +L
Sbjct: 1167 DPTIVPLITIVASL--RVTGLTYSPGVDAAMAVITITL--LMVSYVTDYFRYKRWLQCIL 1222
Query: 107 FLLPEIF 113
L+ +F
Sbjct: 1223 SLVSGVF 1229
>sp|A7MQ63|SECA_CROS8 Protein translocase subunit SecA OS=Cronobacter sakazakii (strain
ATCC BAA-894) GN=secA PE=3 SV=1
Length = 901
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 141 LVHAKLPYPVYFAFENDEIDAVLDDVKKNDATGQPATATT 180
++ LP VY E ++IDA+++D+K+ A GQP T
Sbjct: 418 MIRKDLPDLVYMT-EAEKIDAIIEDIKERTAKGQPVLVGT 456
>sp|C6DET4|SECA_PECCP Protein translocase subunit SecA OS=Pectobacterium carotovorum
subsp. carotovorum (strain PC1) GN=secA PE=3 SV=1
Length = 900
Score = 31.6 bits (70), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 141 LVHAKLPYPVYFAFENDEIDAVLDDVKKNDATGQP 175
++ LP VY E ++IDA+++D+K+ GQP
Sbjct: 418 MIRKDLPDLVYMT-EQEKIDAIIEDIKERSVKGQP 451
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,027,415
Number of Sequences: 539616
Number of extensions: 6654024
Number of successful extensions: 14894
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 14868
Number of HSP's gapped (non-prelim): 24
length of query: 376
length of database: 191,569,459
effective HSP length: 119
effective length of query: 257
effective length of database: 127,355,155
effective search space: 32730274835
effective search space used: 32730274835
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)