Query 017128
Match_columns 376
No_of_seqs 273 out of 1243
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:51:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017128.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017128hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2526 Predicted aminopeptida 100.0 9.5E-79 2.1E-83 597.0 26.8 341 10-366 13-361 (555)
2 PF05450 Nicastrin: Nicastrin; 99.9 2.9E-21 6.3E-26 182.6 13.7 134 220-354 1-147 (234)
3 PF04389 Peptidase_M28: Peptid 99.9 2.2E-21 4.8E-26 174.2 11.2 100 220-324 1-102 (179)
4 KOG2195 Transferrin receptor a 99.9 6.6E-21 1.4E-25 202.9 15.0 165 146-323 281-449 (702)
5 PRK10199 alkaline phosphatase 99.8 2.7E-19 5.8E-24 177.3 15.7 144 198-355 95-248 (346)
6 COG2234 Iap Predicted aminopep 99.5 2.3E-14 5E-19 145.9 10.9 108 198-315 182-294 (435)
7 KOG2194 Aminopeptidases of the 99.5 6E-14 1.3E-18 150.4 11.3 121 192-326 120-240 (834)
8 KOG2657 Transmembrane glycopro 99.4 1.7E-12 3.8E-17 131.8 14.2 210 131-343 59-307 (596)
9 COG4882 Predicted aminopeptida 98.6 9.8E-07 2.1E-11 87.4 13.2 195 58-315 73-278 (486)
10 TIGR03176 AllC allantoate amid 98.6 2.3E-07 4.9E-12 94.5 9.2 79 201-293 56-139 (406)
11 TIGR01879 hydantase amidase, h 98.5 5.5E-07 1.2E-11 91.2 9.5 80 201-294 54-138 (401)
12 PRK06133 glutamate carboxypept 98.5 1.1E-06 2.5E-11 89.3 11.5 97 200-311 87-196 (410)
13 PRK12890 allantoate amidohydro 98.4 1.5E-06 3.2E-11 88.3 9.6 80 201-294 61-145 (414)
14 PRK13590 putative bifunctional 98.4 1.3E-06 2.8E-11 93.2 9.4 79 200-292 237-320 (591)
15 PRK13799 unknown domain/N-carb 98.4 1.3E-06 2.8E-11 93.3 9.2 79 200-292 237-320 (591)
16 TIGR01910 DapE-ArgE acetylorni 98.3 2.7E-06 5.9E-11 85.1 9.4 99 201-312 52-167 (375)
17 KOG3946 Glutaminyl cyclase [Po 98.3 1.6E-06 3.5E-11 83.3 6.3 110 200-316 105-231 (338)
18 PRK09133 hypothetical protein; 98.3 5.8E-06 1.3E-10 85.5 11.0 97 200-308 88-201 (472)
19 PRK08596 acetylornithine deace 98.2 5.7E-06 1.2E-10 84.4 10.4 99 200-311 62-177 (421)
20 TIGR01883 PepT-like peptidase 98.2 9.8E-06 2.1E-10 80.4 10.2 84 200-294 49-146 (361)
21 PRK13381 peptidase T; Provisio 98.2 1.3E-05 2.8E-10 81.2 11.1 84 201-294 55-184 (404)
22 PRK12891 allantoate amidohydro 98.2 7.7E-06 1.7E-10 83.3 9.3 78 201-292 63-145 (414)
23 PRK13983 diaminopimelate amino 98.1 1.3E-05 2.8E-10 80.4 10.3 100 200-310 63-180 (400)
24 PRK07906 hypothetical protein; 98.1 1.4E-05 3.1E-10 81.4 10.1 87 200-295 51-154 (426)
25 PRK09104 hypothetical protein; 98.1 1.8E-05 4E-10 81.7 10.8 99 201-310 69-189 (464)
26 PRK05469 peptidase T; Provisio 98.1 2.6E-05 5.6E-10 79.1 11.0 85 201-294 56-186 (408)
27 PRK12892 allantoate amidohydro 98.1 1.8E-05 3.9E-10 80.2 9.5 79 201-294 62-145 (412)
28 PRK09290 allantoate amidohydro 98.1 1.9E-05 4E-10 80.4 9.7 80 201-294 60-144 (413)
29 PRK08588 succinyl-diaminopimel 98.0 2.5E-05 5.4E-10 78.1 10.0 96 200-310 48-160 (377)
30 PRK12893 allantoate amidohydro 98.0 1.9E-05 4.2E-10 80.0 9.3 80 201-294 63-147 (412)
31 TIGR01882 peptidase-T peptidas 98.0 3.3E-05 7.1E-10 78.7 10.1 84 200-293 57-187 (410)
32 PRK07473 carboxypeptidase; Pro 98.0 4.8E-05 1E-09 76.7 10.9 99 201-312 62-173 (376)
33 TIGR01893 aa-his-dipept aminoa 97.9 3.1E-05 6.7E-10 80.5 9.2 83 201-294 47-152 (477)
34 PRK13013 succinyl-diaminopimel 97.9 5.5E-05 1.2E-09 76.9 10.7 101 200-310 71-186 (427)
35 TIGR01880 Ac-peptdase-euk N-ac 97.9 6.3E-05 1.4E-09 76.0 11.0 99 200-310 57-173 (400)
36 PF09940 DUF2172: Domain of un 97.9 0.00019 4.1E-09 72.0 14.0 107 181-315 102-208 (386)
37 PRK06915 acetylornithine deace 97.9 4.4E-05 9.5E-10 77.6 9.7 85 200-294 80-181 (422)
38 KOG2275 Aminoacylase ACY1 and 97.9 0.00017 3.7E-09 73.0 13.5 85 200-293 74-176 (420)
39 PRK07907 hypothetical protein; 97.9 8.1E-05 1.8E-09 76.6 10.8 97 200-311 70-183 (449)
40 PRK07338 hypothetical protein; 97.9 7E-05 1.5E-09 75.6 9.9 96 201-311 81-189 (402)
41 TIGR01891 amidohydrolases amid 97.8 0.00012 2.7E-09 73.0 10.8 95 200-311 43-150 (363)
42 PRK08201 hypothetical protein; 97.8 0.0001 2.2E-09 76.0 10.3 98 201-310 67-181 (456)
43 PF01546 Peptidase_M20: Peptid 97.8 9.7E-05 2.1E-09 65.9 8.7 87 223-314 1-103 (189)
44 PRK13009 succinyl-diaminopimel 97.8 0.00013 2.8E-09 72.7 10.5 98 200-310 47-162 (375)
45 PRK08262 hypothetical protein; 97.8 0.00013 2.9E-09 75.8 10.9 86 201-295 98-202 (486)
46 TIGR01892 AcOrn-deacetyl acety 97.8 8.2E-05 1.8E-09 73.6 8.8 83 200-295 46-144 (364)
47 PRK04443 acetyl-lysine deacety 97.7 0.00012 2.7E-09 72.6 9.1 90 201-310 49-146 (348)
48 PRK07079 hypothetical protein; 97.7 0.00019 4.2E-09 74.3 10.7 100 200-310 72-189 (469)
49 PRK08652 acetylornithine deace 97.7 0.00011 2.4E-09 72.2 8.3 81 219-311 55-143 (347)
50 PRK13007 succinyl-diaminopimel 97.7 0.00017 3.6E-09 71.3 9.4 94 201-311 50-155 (352)
51 PRK07522 acetylornithine deace 97.7 0.00024 5.1E-09 71.1 10.0 83 200-295 52-150 (385)
52 PRK06837 acetylornithine deace 97.6 0.00023 5E-09 72.7 9.8 87 199-294 82-185 (427)
53 PRK05111 acetylornithine deace 97.6 0.00023 5E-09 71.2 8.8 82 200-295 60-157 (383)
54 PRK13004 peptidase; Reviewed 97.6 0.00049 1.1E-08 69.6 10.5 95 201-311 59-171 (399)
55 PRK06446 hypothetical protein; 97.6 0.00028 6E-09 72.4 8.8 84 200-295 50-150 (436)
56 TIGR01902 dapE-lys-deAc N-acet 97.5 0.00032 7E-09 69.1 8.7 91 201-313 40-138 (336)
57 PRK08651 succinyl-diaminopimel 97.5 0.00047 1E-08 69.3 9.9 95 200-313 63-173 (394)
58 PRK06156 hypothetical protein; 97.5 0.00055 1.2E-08 72.1 10.8 84 219-311 109-213 (520)
59 TIGR01900 dapE-gram_pos succin 97.5 0.00052 1.1E-08 69.0 9.8 98 202-310 42-168 (373)
60 COG0624 ArgE Acetylornithine d 97.5 0.00066 1.4E-08 68.8 10.2 103 199-311 61-180 (409)
61 PF04114 Gaa1: Gaa1-like, GPI 97.4 0.0018 3.9E-08 68.2 12.9 132 199-350 2-145 (504)
62 PRK08554 peptidase; Reviewed 97.4 0.00091 2E-08 69.0 10.4 98 201-313 53-166 (438)
63 PLN02280 IAA-amino acid hydrol 97.4 0.001 2.2E-08 69.6 10.6 93 200-308 140-243 (478)
64 TIGR01886 dipeptidase dipeptid 97.4 0.00049 1.1E-08 71.5 7.8 73 219-295 78-165 (466)
65 TIGR01246 dapE_proteo succinyl 97.4 0.0011 2.4E-08 66.0 10.1 97 201-310 45-159 (370)
66 PLN02693 IAA-amino acid hydrol 97.3 0.0012 2.5E-08 68.2 10.4 83 200-295 90-183 (437)
67 PRK15026 aminoacyl-histidine d 97.3 0.00095 2.1E-08 69.9 9.3 96 201-312 53-171 (485)
68 PRK00466 acetyl-lysine deacety 97.3 0.00072 1.6E-08 67.0 7.8 80 220-312 61-148 (346)
69 PRK07205 hypothetical protein; 97.2 0.0012 2.7E-08 67.8 9.2 72 219-294 75-163 (444)
70 PRK07318 dipeptidase PepV; Rev 97.2 0.00096 2.1E-08 69.1 8.2 84 202-295 68-166 (466)
71 TIGR01887 dipeptidaselike dipe 97.1 0.0018 3.8E-08 67.1 8.9 72 219-294 67-153 (447)
72 TIGR03526 selenium_YgeY putati 96.8 0.007 1.5E-07 61.2 9.4 82 201-294 57-156 (395)
73 TIGR03320 ygeY M20/DapE family 96.6 0.012 2.6E-07 59.3 10.2 82 201-294 57-156 (395)
74 PRK08737 acetylornithine deace 96.3 0.013 2.8E-07 59.0 7.9 75 200-295 54-144 (364)
75 PF05343 Peptidase_M42: M42 gl 96.1 0.032 7E-07 54.8 9.6 98 241-352 132-242 (292)
76 TIGR03107 glu_aminopep glutamy 95.6 0.072 1.6E-06 53.7 9.8 100 239-352 174-284 (350)
77 COG1363 FrvX Cellulase M and r 95.6 0.027 5.8E-07 56.8 6.6 103 238-353 175-289 (355)
78 KOG3566 Glycosylphosphatidylin 95.4 0.3 6.5E-06 51.8 13.5 79 196-295 116-194 (617)
79 COG4187 RocB Arginine degradat 95.3 0.15 3.2E-06 52.7 10.7 106 199-315 64-210 (553)
80 PRK09864 putative peptidase; P 95.1 0.11 2.4E-06 52.5 9.3 100 239-352 171-283 (356)
81 PRK09961 exoaminopeptidase; Pr 95.0 0.09 1.9E-06 52.8 8.0 103 238-352 161-275 (344)
82 COG4310 Uncharacterized protei 94.7 0.096 2.1E-06 51.8 7.3 88 219-324 178-265 (435)
83 TIGR03106 trio_M42_hydro hydro 93.3 0.46 1E-05 47.8 9.3 96 242-352 182-285 (343)
84 COG1473 AbgB Metal-dependent a 92.2 1 2.2E-05 46.2 10.0 94 201-309 57-162 (392)
85 KOG2276 Metalloexopeptidases [ 83.7 4.8 0.00011 41.4 8.1 86 218-307 90-192 (473)
86 TIGR03106 trio_M42_hydro hydro 63.9 7 0.00015 39.3 3.5 28 200-233 45-72 (343)
87 PF05343 Peptidase_M42: M42 gl 63.1 5.7 0.00012 39.0 2.7 26 202-233 2-27 (292)
88 PRK09961 exoaminopeptidase; Pr 62.4 6.9 0.00015 39.3 3.1 27 200-233 42-68 (344)
89 PF02225 PA: PA domain; Inter 62.3 60 0.0013 25.5 8.2 70 73-165 30-100 (101)
90 COG1363 FrvX Cellulase M and r 55.2 10 0.00022 38.6 2.8 28 200-233 44-71 (355)
91 TIGR03107 glu_aminopep glutamy 54.0 11 0.00025 38.0 3.1 29 200-233 40-68 (350)
92 PRK02256 putative aminopeptida 51.7 26 0.00056 36.8 5.3 46 238-291 255-300 (462)
93 PRK02813 putative aminopeptida 46.6 1.6E+02 0.0034 30.7 10.1 124 238-370 229-386 (428)
94 PTZ00371 aspartyl aminopeptida 44.9 1.2E+02 0.0026 31.9 9.1 127 238-370 246-413 (465)
95 PRK09864 putative peptidase; P 34.0 36 0.00078 34.5 3.0 26 200-233 42-67 (356)
96 COG2195 PepD Di- and tripeptid 33.7 50 0.0011 34.3 4.1 63 239-310 141-203 (414)
97 PF02261 Asp_decarbox: Asparta 26.6 88 0.0019 26.8 3.7 59 42-112 54-112 (116)
98 cd02126 PA_EDEM3_like PA_EDEM3 26.5 1.1E+02 0.0023 26.1 4.3 77 75-169 39-119 (126)
99 PF08218 Citrate_ly_lig: Citra 24.7 2.9E+02 0.0063 25.5 6.9 74 79-166 3-93 (182)
100 cd02127 PA_hPAP21_like PA_hPAP 23.7 2.9E+02 0.0064 23.2 6.5 77 74-169 32-109 (118)
101 cd02130 PA_ScAPY_like PA_ScAPY 22.2 4.5E+02 0.0098 21.7 7.9 73 74-169 42-115 (122)
102 PRK05449 aspartate alpha-decar 21.9 1.4E+02 0.003 26.0 4.0 60 42-113 54-113 (126)
103 PF12683 DUF3798: Protein of u 21.4 1.3E+02 0.0027 29.6 4.1 72 270-353 86-169 (275)
104 cd04819 PA_2 PA_2: Protease-as 21.2 4.3E+02 0.0093 22.2 7.0 76 73-168 41-119 (127)
105 cd06919 Asp_decarbox Aspartate 21.0 1.5E+02 0.0032 25.3 3.9 47 42-94 53-99 (111)
106 cd04816 PA_SaNapH_like PA_SaNa 20.4 5E+02 0.011 21.5 8.1 74 74-169 41-115 (122)
107 PF14331 ImcF-related_N: ImcF- 20.1 2.1E+02 0.0046 27.5 5.5 53 98-154 22-76 (266)
No 1
>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]
Probab=100.00 E-value=9.5e-79 Score=596.96 Aligned_cols=341 Identities=46% Similarity=0.678 Sum_probs=312.9
Q ss_pred hhHHHHHHHHHHHHHHHhcccccccceeeeeEEEeeecCCCCccccccccccccccccccCCCCcccceEEEEecCCCCH
Q 017128 10 DMLDSVYSMLALVFILVACVELCDAATVVDVYRLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNI 89 (376)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ef~vyRm~qyd~~g~~~Gsr~~~~~~ea~s~~~~~~~~~~R~~vv~~~~d~t~ 89 (376)
+.|+.|+.++++++++++|+..+++++||+||||+|||++|+|||||.+.+|+||+++.+ ..+|+|+++||.|+..
T Consensus 13 ~~~~~m~~~la~~l~~~~~~~~~daate~~vyrl~qydisg~pyg~rn~~ln~~A~sl~~----~~s~r~~v~r~ld~l~ 88 (555)
T KOG2526|consen 13 ALLFYMTLMLAICLVNGSQQVGEDAATEFHVYRLHQYDISGNPYGCRNYRLNYEAVSLGA----RTSRRTMVTRWLDLLT 88 (555)
T ss_pred hHHHHHHHHHHHHHhhchhhhhhhhcccceeeeeeeeeecCccccccccccchHHHHHHH----hhhhheehhhhhhhhH
Confidence 368899999999999999999999999999999999999999999999999999999865 4589999999999875
Q ss_pred HHHHHHHhccCCccEEEEecCccccccCCCCCCCchhhHHHHHHHHHHHHHhhcCCCCCcEEEeechhHHHHHHHHhc--
Q 017128 90 SFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYFAFENDEIDAVLDDVK-- 167 (376)
Q Consensus 90 ~~~~~l~~~~~~a~gvli~lP~~~~~~s~~~~n~~~~~~~~~~~~~~le~~Ll~~~~~iPVyfi~~~~~~~~i~~~~~-- 167 (376)
....+ ..+|++|||||+||+++..++++ .++.|+.||+.|+..++++||||+++++++..|+.+++
T Consensus 89 ~q~~d--~~~qs~G~vlI~LP~nl~~lnd~----------~r~l~~~LE~~ll~~~tavpVYfApenedl~sil~d~~~~ 156 (555)
T KOG2526|consen 89 TQVDD--MWAQSTGAVLIFLPDNLDELNDI----------DRKLFIDLEAKLLSAKTAVPVYFAPENEDLVSILHDVNTR 156 (555)
T ss_pred HHHHH--HHHhccCcEEEEechhhhhCCHH----------HHHHHHHHHHHHhcCCCCcceEecccchHHHHHHHhhccc
Confidence 55444 34578999999999999988885 67899999999999999999999999999999999974
Q ss_pred cCCCCCC----CCceecCCeEEEeccCCCcccCCCCcceEEEEEc-CcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCC
Q 017128 168 KNDATGQ----PATATTGGYKLVIPIAEPKKVASPTITNIQGWLQ-GLKADGDANQLPTIAIVASYDTFGAAPALSVGSD 242 (376)
Q Consensus 168 ~~~~~~~----~~t~~~~~~~l~~~~~~~~~~~~~~~~NV~g~L~-G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAd 242 (376)
.++++|+ ..|+++|+|++++++.+|.+..++++.||+|+|+ |....+|..+.|+|+|+|||||||.+|+++.|||
T Consensus 157 ~~dapg~~~~ll~Tasangy~iv~sg~sp~a~~s~ki~nI~G~L~~glra~~dg~~lPtIaivA~ydtfgaap~lsvgAD 236 (555)
T KOG2526|consen 157 SEDAPGALQHLLQTASANGYSIVSSGQSPEAPPSYKILNIVGRLSSGLRAEGDGSALPTIAIVAHYDTFGAAPGLSVGAD 236 (555)
T ss_pred cccCcchHHHHHhhhccCcEEEEecCCCcccCCCCccceEEeecccccccccccccCCeEEEEEeccccccCCCCCCCCC
Confidence 3444453 3478999999999999999999999999999998 8776666778999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccccCCCCceEEE
Q 017128 243 SNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIH 322 (376)
Q Consensus 243 dn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig~~~~~L~lh 322 (376)
+||||+++|||++|+|+++|.+++++++||++|++++|+.+||+|+++|++--+....+|++++||||+||++.+.||||
T Consensus 237 SNGSGvvaLLelarlfSkly~ypsTrakYnLlF~lt~aG~lNyqGTkkWLe~dd~~lq~nVdfaiCLdtig~~~s~l~mH 316 (555)
T KOG2526|consen 237 SNGSGVVALLELARLFSKLYDYPSTRAKYNLLFILTAAGKLNYQGTKKWLEFDDADLQKNVDFAICLDTIGRKTSGLFMH 316 (555)
T ss_pred CCCccHHHHHHHHHHHHHHhcCcccccceeEEEEEccCccccccchhhhhhcchHHHHhcccEEEEhhhhccccCceEEE
Confidence 99999999999999999999889999999999999999999999999999965566678999999999999998899999
Q ss_pred ecCCC-CchHHHHHHHHHHHHhhhcCceeeecccccccCchHHHH
Q 017128 323 VSKPP-ENAYIKQIFEGFTNVAEELGFKVGLKHKKINISNPRVIK 366 (376)
Q Consensus 323 ~s~~p-~~~~~~~l~~~l~~~a~~~~i~~~~vhkkin~~~~~~~~ 366 (376)
+|||| .++.+.+||+.|+++|.++++.+.++|||||+++++||-
T Consensus 317 vsKpP~dnt~i~qffr~l~svAek~~~~v~~khkkInla~s~lAW 361 (555)
T KOG2526|consen 317 VSKPPSDNTVIAQFFRRLNSVAEKKNIEVVTKHKKINLASSRLAW 361 (555)
T ss_pred ccCCCCcchHHHHHHHHhhhhchhcceEEEEEeeeEeeccchhhh
Confidence 99999 689999999999999999999999999999999999983
No 2
>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch. Nicastrin is synthesised in fibroblasts and neurons as an endoglycosidase-H-sensitive glycosylated precursor protein (immature nicastrin) and is then modified by complex glycosylation in the Golgi apparatus and by sialylation in the trans-Golgi network (mature nicastrin) [].; GO: 0016485 protein processing, 0016021 integral to membrane
Probab=99.86 E-value=2.9e-21 Score=182.58 Aligned_cols=134 Identities=31% Similarity=0.448 Sum_probs=109.6
Q ss_pred CEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhH--
Q 017128 220 PTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQ-- 297 (376)
Q Consensus 220 ~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~-- 297 (376)
|+|+++|++|+++.|+++++||++++||+++||++|++|+++... ...+++||+|++|+||.|||+||++|++++..
T Consensus 1 ~iIlv~armDs~s~F~~~s~GA~s~~sglvaLLaaA~aL~~~~~~-~~~~~knV~F~~F~GEs~dYiGS~R~vyDm~~~~ 79 (234)
T PF05450_consen 1 PIILVVARMDSFSFFHDLSPGADSSVSGLVALLAAAEALSKLLPD-SSNLNKNVLFAFFNGESFDYIGSSRFVYDMQNGN 79 (234)
T ss_pred CEEEEEecccchhcccCCCCCcccchHHHHHHHHHHHHHHHhhhc-cccccCcEEEEEecCccccccchHHHHHHHHcCc
Confidence 689999999999999999999999999999999999999998542 34679999999999999999999999998752
Q ss_pred ----------hhhcCeeEEEEeccccCCCC-ceEEEecCCCCchHHHHHHHHHHHHhhhcCceeeecc
Q 017128 298 ----------RLRESIDYAICLNSVGSWNN-ELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGLKH 354 (376)
Q Consensus 298 ----------~~~~~i~~vInLD~ig~~~~-~L~lh~s~~p~~~~~~~l~~~l~~~a~~~~i~~~~vh 354 (376)
...++|+++||++++|.+.+ .+|+|+..+..++...++.+.+.++++..+.....++
T Consensus 80 f~~~~~~~~~i~~~~I~~~IElgqvg~~~~~~l~~Hvd~~~~~~~~~~~~~~l~~~~~s~~~~~~~~~ 147 (234)
T PF05450_consen 80 FPSDSLQFQPISLDNIDSVIELGQVGLSNSSGLYAHVDSPSNSSVANQVDEALDAAAKSLASSNIVIK 147 (234)
T ss_pred CcccccccccccHHHCCEEEEeeccCCCCCCCEEEEecCCccchhhHHHHHHHHHHHHhcccccccee
Confidence 22479999999999999843 6999998655555555666666665554444343333
No 3
>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in metallopeptidases belonging to the MEROPS peptidase family M28 (aminopeptidase Y, clan MH) []. They also contain a transferrin receptor-like dimerisation domain (IPR007365 from INTERPRO) and a protease-associated PA domain (IPR003137 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A 3BI1_A 2C6C_A ....
Probab=99.86 E-value=2.2e-21 Score=174.22 Aligned_cols=100 Identities=30% Similarity=0.420 Sum_probs=80.3
Q ss_pred CEEEEEecCCCCCCC--CCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhH
Q 017128 220 PTIAIVASYDTFGAA--PALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQ 297 (376)
Q Consensus 220 ~~IvI~AHyDs~g~~--~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~ 297 (376)
++|||+|||||++.. +...+||+|||||+++|||+||.|++.. ..|+++|+|++|+|||.|+.||++|+++ ..
T Consensus 1 e~ivi~aH~Ds~~~~~~~~~~~GA~DnasGva~lLelAr~l~~~~----~~~~~~i~fv~~~~EE~gl~GS~~~~~~-~~ 75 (179)
T PF04389_consen 1 EYIVIGAHYDSVGGDADGSWSPGANDNASGVAALLELARVLKELK----PQPKRTIRFVFFDGEEQGLLGSRAFVEH-DH 75 (179)
T ss_dssp EEEEEEEE--BESCCC-TCSSS-TTTTHHHHHHHHHHHHHHHHST----HSSSEEEEEEEESSGGGTSHHHHHHHHH-HH
T ss_pred CEEEEEeecCCCCCcCCCcccCCcccchHHHHHHHHHHHHHHHhh----cccCccEEEEEecccccCccchHHHHHh-hh
Confidence 489999999998721 1359999999999999999999999953 4578999999999999999999999984 34
Q ss_pred hhhcCeeEEEEeccccCCCCceEEEec
Q 017128 298 RLRESIDYAICLNSVGSWNNELWIHVS 324 (376)
Q Consensus 298 ~~~~~i~~vInLD~ig~~~~~L~lh~s 324 (376)
...+++.++||||++|.++..++....
T Consensus 76 ~~~~~~~~~inlD~~g~~~~~~~~~~~ 102 (179)
T PF04389_consen 76 EELDNIAAVINLDMIGSGDPTVYSEGS 102 (179)
T ss_dssp CHHHHEEEEEEECSSBSSSSEEEEEEG
T ss_pred cccccceeEEeccccccCcccceeeee
Confidence 457899999999999997344444443
No 4
>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]
Probab=99.85 E-value=6.6e-21 Score=202.87 Aligned_cols=165 Identities=19% Similarity=0.221 Sum_probs=125.9
Q ss_pred CCCcEEEeechhHHHHHHHHhccCCCC-CCCC-c-eecCCeEEEecc-CCCcccCCCCcceEEEEEcCcCCCCCCCCCCE
Q 017128 146 LPYPVYFAFENDEIDAVLDDVKKNDAT-GQPA-T-ATTGGYKLVIPI-AEPKKVASPTITNIQGWLQGLKADGDANQLPT 221 (376)
Q Consensus 146 ~~iPVyfi~~~~~~~~i~~~~~~~~~~-~~~~-t-~~~~~~~l~~~~-~~~~~~~~~~~~NV~g~L~G~~~~~~~~~~~~ 221 (376)
..||.-.+.. ++++-+.+.+.+...+ +... + ....|+...... ......+...+.||+|.|+|+. +++.+
T Consensus 281 P~Ip~~Pis~-~~ae~l~~~~~g~~~~~~~~~~~~~~gpg~~~~~~~~~~~~~~~~~ki~NIig~I~Gs~-----epD~~ 354 (702)
T KOG2195|consen 281 PKIPSLPISA-EDAEILLRLLGGGVKPDGLLGVSYRVGPGSTGDKDLVVVQNTREETKIQNIIGKIEGSE-----EPDRY 354 (702)
T ss_pred CCCCCcCccc-hhHHHHHHHhCCCcccccccCccccccccccccccceeccceeeeeeeeeEEEEEecCc-----CCCeE
Confidence 3578777776 5777777777654322 1100 0 011111111000 0003466677999999999976 36899
Q ss_pred EEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhc
Q 017128 222 IAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRE 301 (376)
Q Consensus 222 IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~ 301 (376)
|||+||+|+| .+||.|++||++.|+|++|.|+++++ .+|+|+|+|+|++|+|||+|++||.+|+|.+...+..
T Consensus 355 ViigahrDSw------~~Ga~dp~sGta~Ll~i~~~~~~~~k-~gwrP~RtI~F~sWdAeEfGliGStE~~E~~~~~L~~ 427 (702)
T KOG2195|consen 355 VIIGAHRDSW------TFGAIDPNSGTALLLEIARALSKLKK-RGWRPRRTILFASWDAEEFGLLGSTEWAEEYLKNLKS 427 (702)
T ss_pred EEEecccccc------ccCCcCCCccHHHHHHHHHHHHHHHH-cCCCccceEEEEEccchhccccccHHHHHHHHHHhhh
Confidence 9999999999 78999999999999999999999987 4699999999999999999999999999998888889
Q ss_pred CeeEEEEeccccCCCCceEEEe
Q 017128 302 SIDYAICLNSVGSWNNELWIHV 323 (376)
Q Consensus 302 ~i~~vInLD~ig~~~~~L~lh~ 323 (376)
++..+||+|+++.++..++...
T Consensus 428 ~av~yin~d~~~~~~~~l~~~~ 449 (702)
T KOG2195|consen 428 RAVVYINVDNAVLGDYTLHVKT 449 (702)
T ss_pred eeEEEEeccccccCCceeEEec
Confidence 9999999999999755554443
No 5
>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional
Probab=99.81 E-value=2.7e-19 Score=177.26 Aligned_cols=144 Identities=20% Similarity=0.218 Sum_probs=112.2
Q ss_pred CCcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC----------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCC
Q 017128 198 PTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP----------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKT 267 (376)
Q Consensus 198 ~~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~----------~~~~GAddn~SGva~LLElar~fs~l~~~~~~ 267 (376)
....||++.++|.. ++.|+|+|||||++... ...+||+||+||+++|||++|.|.+.
T Consensus 95 ~~g~nVIa~~~G~~-------~~~Ill~AH~DTV~p~~~~~~~~~~~g~~~~GA~DnasGvA~lLe~ar~l~~~------ 161 (346)
T PRK10199 95 VTGSTVIAAHEGKA-------PQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAERLKNV------ 161 (346)
T ss_pred CccceEEEEECCCC-------CCeEEEEEEcCcCCCCCCCccccCCCCcccCCccccHHHHHHHHHHHHHHhhC------
Confidence 34789999999843 57899999999986321 14589999999999999999999754
Q ss_pred CCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccccCCCCceEEEecCCCCchHHHHHHHHHHHHhhhcC
Q 017128 268 RGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEELG 347 (376)
Q Consensus 268 ~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig~~~~~L~lh~s~~p~~~~~~~l~~~l~~~a~~~~ 347 (376)
+++++|.|+++++||.|+.||++|++++....++++.++||+||++.+ +.++++.+.......-....+.+..+|..+|
T Consensus 162 ~~~~~I~fv~~~~EE~Gl~GS~~~~~~~~~~~~~~~~~~iNlD~~~~~-d~~~~~~g~~~~~~~~~~~~d~~~~~a~~~g 240 (346)
T PRK10199 162 PTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVG-DKLYFNSGVNTPEAVRKLTRDRALAIARRHG 240 (346)
T ss_pred CCCCcEEEEEECCcccCcHHHHHHHHhcCccchhcEEEEEEeccCCCC-CceEEecCCCcHHHHhHHHHHHHHHHHHHcC
Confidence 257899999999999999999999998655457899999999999985 8899986643322211223455667778888
Q ss_pred ceeeeccc
Q 017128 348 FKVGLKHK 355 (376)
Q Consensus 348 i~~~~vhk 355 (376)
+.+...+.
T Consensus 241 ~~~~~~~~ 248 (346)
T PRK10199 241 IAATTNPG 248 (346)
T ss_pred CccccCCC
Confidence 77755543
No 6
>COG2234 Iap Predicted aminopeptidases [General function prediction only]
Probab=99.54 E-value=2.3e-14 Score=145.90 Aligned_cols=108 Identities=24% Similarity=0.264 Sum_probs=87.0
Q ss_pred CCcceEEEEEcCcCCCC-----CCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcee
Q 017128 198 PTITNIQGWLQGLKADG-----DANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYN 272 (376)
Q Consensus 198 ~~~~NV~g~L~G~~~~~-----~~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~ 272 (376)
....|++++++|..... ....++.+++++|+|+... .+||+|||||+++|||+||.|... +|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~----~~GA~DNasGva~llEiAr~l~~~------~p~~~ 251 (435)
T COG2234 182 LTSKNVAATISGSSQIIEAIIGTAHSDSLGLLGAHIDSVPT----GPGADDNASGVAALLELARVLKGN------PPKRT 251 (435)
T ss_pred eEEEEEeeeeecccccceEEEeccCCCceeeecccccCCcC----CCCcccccHHHHHHHHHHHHHhcC------CCCce
Confidence 44778888887762110 0113566777777777544 799999999999999999999976 27999
Q ss_pred EEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccccCC
Q 017128 273 ILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSW 315 (376)
Q Consensus 273 I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig~~ 315 (376)
|.|++|++||.|+.||++|+.++.....+++..|||+||+|..
T Consensus 252 v~f~~~~aEE~Gl~GS~~~~~~~~~~~~~~~~~viN~Dm~g~~ 294 (435)
T COG2234 252 VRFVAFGAEESGLLGSEAYVKRLSKDLDKKIALVINLDMLGSP 294 (435)
T ss_pred EEEEEecchhhcccccHHHHhcCCcchhhhhheEEecccccCC
Confidence 9999999999999999999999875556788889999999996
No 7
>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.51 E-value=6e-14 Score=150.38 Aligned_cols=121 Identities=19% Similarity=0.280 Sum_probs=103.5
Q ss_pred CcccCCCCcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCce
Q 017128 192 PKKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRY 271 (376)
Q Consensus 192 ~~~~~~~~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~ 271 (376)
...++...+.||+-+|.++... ....|++.|||||++. ++||+|+|+|+|+|||++|.+++.+. ..++
T Consensus 120 ~~~~~Y~~i~NIvVki~~k~~~----~~~~lLlnaHfDSvpt----~~gAtDDg~~va~mLe~lRv~s~~~~----~l~~ 187 (834)
T KOG2194|consen 120 GMTLVYQNISNIVVKISPKNGN----DKNALLLNAHFDSVPT----GPGATDDGSGVASMLEALRVLSKSDK----LLTH 187 (834)
T ss_pred hhhheeeeeeeEEEecCCCCCC----ccceeeeeccccccCC----CCCCCcchhHHHHHHHHHHHhhcCCC----cccc
Confidence 3456777799999999988631 2349999999999998 99999999999999999999998752 3489
Q ss_pred eEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccccCCCCceEEEecCC
Q 017128 272 NILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNNELWIHVSKP 326 (376)
Q Consensus 272 ~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig~~~~~L~lh~s~~ 326 (376)
+|+|+++++||.+++||..|+.+++ +..++.++||||..|.++..+-++.++-
T Consensus 188 ~vVFLfNgaEE~~L~gsH~FItQH~--w~~~~ka~INLea~GsGGreiLFQagp~ 240 (834)
T KOG2194|consen 188 SVVFLFNGAEESGLLGSHAFITQHP--WSKNIKAVINLEAAGSGGREILFQAGPN 240 (834)
T ss_pred cEEEEecCcccchhhhcccceecCh--hhhhhheEEeccccCcccceeEEecCCc
Confidence 9999999999999999999999764 5789999999999999866677766643
No 8
>KOG2657 consensus Transmembrane glycoprotein nicastrin [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.7e-12 Score=131.85 Aligned_cols=210 Identities=16% Similarity=0.203 Sum_probs=148.7
Q ss_pred HHHHHHHHHHhhcCCCCCc-EEEeechhHHHHHHHHhccCCCC---CCC-----------C------c---eec-----C
Q 017128 131 KNVLLELEKLLVHAKLPYP-VYFAFENDEIDAVLDDVKKNDAT---GQP-----------A------T---ATT-----G 181 (376)
Q Consensus 131 ~~~~~~le~~Ll~~~~~iP-Vyfi~~~~~~~~i~~~~~~~~~~---~~~-----------~------t---~~~-----~ 181 (376)
+.+|..+...++..++..| +.|+....+.+.|-++......+ +.+ . | ... .
T Consensus 59 ~~~~~a~~n~~~~k~~~~~~i~~~~~sn~teiikq~~~~hn~p~sg~~stf~~c~ms~~a~nhn~~~se~c~rrg~~~~~ 138 (596)
T KOG2657|consen 59 INSRGAITNDGLMKIDWRIQIVFIDNSNDTEIIKQCYSMHNKPKSGGSSTFPYCGMSFRAANHNAGNSEICYRRGKNDAK 138 (596)
T ss_pred ccccccccccchhcccCcceEEEeecccHHHHHHHHHHHhCCCCCCCCCCCchhhhhchhhhcCccccHHHHhcCCcchh
Confidence 3467777777888888877 88877665666554444333211 110 0 0 011 1
Q ss_pred CeEEEeccCCCcccCCCC-cceEEEEEcCcCCCCC-CCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 017128 182 GYKLVIPIAEPKKVASPT-ITNIQGWLQGLKADGD-ANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFS 259 (376)
Q Consensus 182 ~~~l~~~~~~~~~~~~~~-~~NV~g~L~G~~~~~~-~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs 259 (376)
-+|+. ....+...|.+. .+||+..+++..-... +...+++|.+|..|+++.|++.++||++.-++++++|..||+++
T Consensus 139 ~iq~~-ds~~~~~~C~pl~~ynvws~l~pi~ts~tnk~~~~vvv~tarmdsrsfF~n~s~Ga~S~~~slv~~laaa~al~ 217 (596)
T KOG2657|consen 139 LIQMI-DSGDAPQLCGPLHSYNVWSFLTPIPTSPTNKTISKVVVVTARMDSRSFFPNISVGAVSVLTSLVSVLAAARALK 217 (596)
T ss_pred hhhhh-ccCCcchhccccCCccceeccCccccccccCcCcceeeeeeecccccccccccCCccccchhHHHHHHHHHHhc
Confidence 23543 334456677776 8999999987542211 22378999999999999999999999999999999999999998
Q ss_pred hccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhh----HhhhcC---eeEEEEeccccCC-CCceEEEecCCCCchH
Q 017128 260 LLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFD----QRLRES---IDYAICLNSVGSW-NNELWIHVSKPPENAY 331 (376)
Q Consensus 260 ~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~----~~~~~~---i~~vInLD~ig~~-~~~L~lh~s~~p~~~~ 331 (376)
+... -...++||+|+++.||.++|+||.+++.+++ +...++ |++++.+.++|.. +.+||+|+....-.+.
T Consensus 218 r~pa--i~nl~rnV~f~~f~get~~ylgS~r~~yeme~gk~pva~~s~~~iD~~LEiGqvg~~~s~kl~~~~d~~~~~sv 295 (596)
T KOG2657|consen 218 RQPA--INNLNRNVFFAFFNGETLDYLGSGRAAYEMENGKFPVAIRSDNEIDYILEIGQVGVAKSRKLYVHVDGERYQSV 295 (596)
T ss_pred cCcc--cccccceeEEEEeecceeeeccchhhhhHhhcCCCCeeeccCccchheeeecccccccCceEEEEeccchhhhH
Confidence 8753 3457899999999999999999999999874 233566 9999999999986 4689999873332233
Q ss_pred HHHHHHHHHHHh
Q 017128 332 IKQIFEGFTNVA 343 (376)
Q Consensus 332 ~~~l~~~l~~~a 343 (376)
-.+..+.|.+..
T Consensus 296 ~nqtld~L~~~e 307 (596)
T KOG2657|consen 296 KNQTLDVLDRIE 307 (596)
T ss_pred HHHHHHHHHHHH
Confidence 344455554444
No 9
>COG4882 Predicted aminopeptidase, Iap family [General function prediction only]
Probab=98.56 E-value=9.8e-07 Score=87.36 Aligned_cols=195 Identities=17% Similarity=0.125 Sum_probs=118.0
Q ss_pred ccccccccccccCCCCcccceEEEEecCCCCHHHHHHH--HhccCCccEEEEecCccccccCCCCCCCchhhHHHHHHHH
Q 017128 58 ASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEY--VSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLL 135 (376)
Q Consensus 58 ~~~~~ea~s~~~~~~~~~~R~~vv~~~~d~t~~~~~~l--~~~~~~a~gvli~lP~~~~~~s~~~~n~~~~~~~~~~~~~ 135 (376)
.+-.-|+|-+.- .++.=+|.+|-.+.+++. .++.+ ...++++-|+|+.+.+........
T Consensus 73 ls~~IEgr~v~~-~gD~~Gr~~Va~~pq~vd--d~k~~~i~Aae~ga~a~~f~~~~~rriV~~G---------------- 133 (486)
T COG4882 73 LSGDIEGRPVVL-EGDAGGRVVVARAPQVVD--DLKAAAILAAEAGAEALLFESRDPRRIVTGG---------------- 133 (486)
T ss_pred cccccccceecc-cCCCCCeEEeeeccccHH--HHHHHHHHHHHcCCeEEEEecCCceeEEecc----------------
Confidence 333445554432 122333444445555553 22222 234567888888744433322221
Q ss_pred HHHHHhhcCCCCCcEEEeechhHHHHHHHHhccCCCCCCCCceecCCeEEEeccCCCcccCCCCcceEEEEEcCcCCCCC
Q 017128 136 ELEKLLVHAKLPYPVYFAFENDEIDAVLDDVKKNDATGQPATATTGGYKLVIPIAEPKKVASPTITNIQGWLQGLKADGD 215 (376)
Q Consensus 136 ~le~~Ll~~~~~iPVyfi~~~~~~~~i~~~~~~~~~~~~~~t~~~~~~~l~~~~~~~~~~~~~~~~NV~g~L~G~~~~~~ 215 (376)
+++..+...-+||||+..+++ .-..+- .....++.+.. .....-++|+++.=.|.
T Consensus 134 d~gy~~~s~PtPIPva~v~en-~~~y~~---------------~~~rvrl~vD~----~~~~ty~y~~Ia~~~~e----- 188 (486)
T COG4882 134 DWGYSVSSSPTPIPVAVVPEN-YSRYAE---------------EAGRVRLWVDA----CVERTYDYNVIAVDGGE----- 188 (486)
T ss_pred cccccCCCCCCCcceEEeccC-cchhhc---------------cceeEEEEEec----ccceeEEEEEEEecCCC-----
Confidence 224445566689999999866 211110 01112222211 01111377888764442
Q ss_pred CCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCC---------c
Q 017128 216 ANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNY---------N 286 (376)
Q Consensus 216 ~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~---------~ 286 (376)
+.+|+|+||+||| ..|+.||--|++.-.++++.|..- -+-+-++.|++||.|. .
T Consensus 189 ---n~vv~i~AH~DHW------~~G~tDN~lg~~~AV~~~~~lr~~--------~~~~~lv~FtAEE~g~p~~~sfyWa~ 251 (486)
T COG4882 189 ---NGVVLIGAHLDHW------YTGFTDNILGVAQAVETAGRLRGR--------GLAAGLVVFTAEEHGMPGMASFYWAA 251 (486)
T ss_pred ---CCceEEeechhhh------hhcccchhhhHHHHHHHHHHHhhc--------CcceeEEEEeccccCCCCCcceeecc
Confidence 5799999999999 779999999999999999988643 2334477788888654 6
Q ss_pred chHHHHHhhhHhhhcCeeEEEEeccccCC
Q 017128 287 GTHKWLRSFDQRLRESIDYAICLNSVGSW 315 (376)
Q Consensus 287 GS~~~ve~~~~~~~~~i~~vInLD~ig~~ 315 (376)
||+.|+++... -+.|.+.+|+|.+|..
T Consensus 252 GSr~~lk~~k~--~~~v~~~VN~Dv~g~~ 278 (486)
T COG4882 252 GSRGLLKESKA--AEEVEAYVNFDVAGYR 278 (486)
T ss_pred cchHHHhhcCC--chhhhheecccccccc
Confidence 88888887643 3678899999999985
No 10
>TIGR03176 AllC allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea.
Probab=98.56 E-value=2.3e-07 Score=94.54 Aligned_cols=79 Identities=16% Similarity=0.085 Sum_probs=69.2
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~g 280 (376)
-|++|+++|..+ +.|.|++++|+||++ ..|.-|+..|+++.||++|.|.+.. .+|+++|.+++|..
T Consensus 56 gN~~~~~~g~~~-----~~~~i~~gsHlDtv~-----~gG~~dg~~Gv~~~le~~~~l~~~~----~~~~~~i~vi~~~~ 121 (406)
T TIGR03176 56 GNLYGRLVGTEF-----PEETILTGSHIDTVV-----NGGNLDGQFGALAAWLAVDYLKEKY----GAPLRTVEVLSMAE 121 (406)
T ss_pred CcEEEEecCCCC-----CCCeEEEeccccCCC-----CCCccCchhhHHHHHHHHHHHHHcC----CCCCCCeEEEEecc
Confidence 599999999763 479999999999996 3577799999999999999999763 46899999999999
Q ss_pred CCCC-----CcchHHHHH
Q 017128 281 GPYN-----YNGTHKWLR 293 (376)
Q Consensus 281 Ee~g-----~~GS~~~ve 293 (376)
||-+ ++||+.|.-
T Consensus 122 EEg~rf~~~~~Gs~~~~g 139 (406)
T TIGR03176 122 EEGSRFPYVFWGSKNIFG 139 (406)
T ss_pred ccCccCCcccccHHHHhC
Confidence 9976 999999984
No 11
>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family. Enzymes in this subfamily hydrolize the amide bonds of compounds containing carbamoyl groups or hydantoin rings. These enzymes are members of the broader family of amidases represented by pfam01546.
Probab=98.47 E-value=5.5e-07 Score=91.22 Aligned_cols=80 Identities=19% Similarity=0.108 Sum_probs=68.2
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~g 280 (376)
.||+++++|..+ +.|.|++++|+|+++. .|.-|+..|++++|++++.|.+.. .+|+++|.|++|..
T Consensus 54 ~nl~a~~~g~~~-----~~~~l~~~~H~DtV~~-----gg~~dg~~gvaa~l~a~~~l~~~g----~~~~~~i~~~~~~d 119 (401)
T TIGR01879 54 GNLIGRKEGTEP-----PLEVVLSGSHIDTVVN-----GGNFDGQLGVLAGIEVVDALKEAY----VVPLHPIEVVAFTE 119 (401)
T ss_pred CcEEEEecCCCC-----CCCEEEEecccccCCC-----CCccCCHHHHHHHHHHHHHHHHcC----CCCCCCeEEEEEeC
Confidence 599999998652 2589999999999974 466788899999999999998763 46799999999999
Q ss_pred CCC-----CCcchHHHHHh
Q 017128 281 GPY-----NYNGTHKWLRS 294 (376)
Q Consensus 281 Ee~-----g~~GS~~~ve~ 294 (376)
||. ++.||+.|+..
T Consensus 120 EE~~~f~~~~~Gs~~~~~~ 138 (401)
T TIGR01879 120 EEGSRFPYGMWGSRNMVGL 138 (401)
T ss_pred CcCcCcccccccHHHHhcc
Confidence 997 88999999753
No 12
>PRK06133 glutamate carboxypeptidase; Reviewed
Probab=98.46 E-value=1.1e-06 Score=89.26 Aligned_cols=97 Identities=12% Similarity=0.141 Sum_probs=77.1
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-C------------CCCCCCCchhHHHHHHHHHHHHHhccCCCC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-A------------LSVGSDSNGSGVVALLEVARLFSLLYSNPK 266 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-~------------~~~GAddn~SGva~LLElar~fs~l~~~~~ 266 (376)
..|++++++|.. .|+|++.+|+|+++... | ++.|+.|+-+|++++|++++.|.+..
T Consensus 87 ~~~lia~~~g~~-------~~~ill~~H~D~Vp~~~~w~~~Pf~~~~~~iyGrG~~D~kgg~a~~l~a~~~l~~~~---- 155 (410)
T PRK06133 87 GDMVVATFKGTG-------KRRIMLIAHMDTVYLPGMLAKQPFRIDGDRAYGPGIADDKGGVAVILHALKILQQLG---- 155 (410)
T ss_pred CCeEEEEECCCC-------CceEEEEeecCccCCCCccCCCCEEEECCEEECCccccchHHHHHHHHHHHHHHHcC----
Confidence 469999998742 47899999999998521 1 35788999999999999999998753
Q ss_pred CCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEecc
Q 017128 267 TRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (376)
Q Consensus 267 ~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ 311 (376)
..++.+|.|++..+||.|..|++.++++.. .+.+++|+++.
T Consensus 156 ~~~~~~i~~~~~~dEE~g~~G~~~~~~~~~----~~~d~~i~~ep 196 (410)
T PRK06133 156 FKDYGTLTVLFNPDEETGSPGSRELIAELA----AQHDVVFSCEP 196 (410)
T ss_pred CCCCCCEEEEEECCcccCCccHHHHHHHHh----ccCCEEEEeCC
Confidence 345679999999999999899999998642 24567777663
No 13
>PRK12890 allantoate amidohydrolase; Reviewed
Probab=98.37 E-value=1.5e-06 Score=88.34 Aligned_cols=80 Identities=21% Similarity=0.142 Sum_probs=67.2
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~g 280 (376)
.|++++++|... +.|.|++.+|+|+++. .|+.|+.+|++++|++++.|.+.. ..++++|.|+++..
T Consensus 61 ~nlia~~~g~~~-----~~~~l~~~~H~DtVp~-----~g~~D~~~g~aa~l~a~~~l~~~~----~~~~~~i~~~~~~d 126 (414)
T PRK12890 61 GNLFGRLPGRDP-----DLPPLMTGSHLDTVPN-----GGRYDGILGVLAGLEVVAALREAG----IRPPHPLEVIAFTN 126 (414)
T ss_pred CcEEEEeCCCCC-----CCCEEEEeCcccCCCC-----CCCcCCHHHHHHHHHHHHHHHHcC----CCCCCCeEEEEEec
Confidence 499999988631 2579999999999974 477899999999999999998753 35688999999999
Q ss_pred CCC-----CCcchHHHHHh
Q 017128 281 GPY-----NYNGTHKWLRS 294 (376)
Q Consensus 281 Ee~-----g~~GS~~~ve~ 294 (376)
||. ++.|++.+.+.
T Consensus 127 EE~~~~~~~~~G~~~~~~~ 145 (414)
T PRK12890 127 EEGVRFGPSMIGSRALAGT 145 (414)
T ss_pred ccccccCCccccHHHHHcc
Confidence 997 77999888764
No 14
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=98.36 E-value=1.3e-06 Score=93.25 Aligned_cols=79 Identities=15% Similarity=0.161 Sum_probs=66.5
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTS 279 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~ 279 (376)
.-||+|+++|.++ ..|.|++++|+||+.- .|.-|+..|+++.||++|.|.+.. .+++++|.|++|.
T Consensus 237 ~GNl~~~~~g~~~-----~~~~v~~gsHlDTV~~-----gG~~DG~~Gv~a~lea~~~l~~~~----~~~~~~i~vv~~~ 302 (591)
T PRK13590 237 VGNVVGRYKGSTP-----QAKRLLTGSHYDTVRN-----GGKYDGRLGIFVPMACVRELHRQG----RRLPFGLEVVGFA 302 (591)
T ss_pred CCCEEEEecCCCC-----CCCeEEEecccccCCC-----CCCcccHHHHHHHHHHHHHHHHcC----CCCCCCeEEEEec
Confidence 5899999999652 3588999999999953 466789999999999999999863 4567899999999
Q ss_pred CCCC-----CCcchHHHH
Q 017128 280 GGPY-----NYNGTHKWL 292 (376)
Q Consensus 280 gEe~-----g~~GS~~~v 292 (376)
.||. ++.||+.|.
T Consensus 303 ~EEg~rF~~~~~GS~~~~ 320 (591)
T PRK13590 303 EEEGQRYKATFLGSGALI 320 (591)
T ss_pred CCccccCCccccchHHHh
Confidence 9996 599999743
No 15
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional
Probab=98.35 E-value=1.3e-06 Score=93.25 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=68.9
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTS 279 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~ 279 (376)
.-||+|+++|.++ ..|.|++++|+||+.- .|-=|+..|+++.||++|.|.... .+++++|.|+.|.
T Consensus 237 ~gNv~~~~~g~~~-----~~p~v~~gSHlDTV~~-----gG~~DG~~Gv~a~l~~~~~l~~~~----~~~~~~i~vi~~~ 302 (591)
T PRK13799 237 VGNVVGRYKAADD-----DAKTLITGSHYDTVRN-----GGKYDGREGIFLAIACVKELHEQG----ERLPFHFEVIAFA 302 (591)
T ss_pred CCCEEEEcCCCCC-----CCCeEEEeccccccCC-----CCccccHHHHHHHHHHHHHHHHcC----CCCCCCeEEEEec
Confidence 4799999999753 3789999999999963 566688899999999999999864 5678999999999
Q ss_pred CCCC-----CCcchHHHH
Q 017128 280 GGPY-----NYNGTHKWL 292 (376)
Q Consensus 280 gEe~-----g~~GS~~~v 292 (376)
.||. ++.||+.|.
T Consensus 303 ~EEg~rF~~~~~GS~~~~ 320 (591)
T PRK13799 303 EEEGQRFKATFLGSGALI 320 (591)
T ss_pred CCCccCCCccccchHHHh
Confidence 9996 899999997
No 16
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase. This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.
Probab=98.29 E-value=2.7e-06 Score=85.05 Aligned_cols=99 Identities=17% Similarity=0.113 Sum_probs=76.4
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~--------~---------~~~~GAddn~SGva~LLElar~fs~l~~ 263 (376)
.|+++.++|.. ..|+|++.+|+|+++.. | -++.|+.|+.+|++++|+.++.|.+..
T Consensus 52 ~~~~~~~~g~~------~~~~ill~~H~DtVp~~~~~~w~~~Pf~~~~~~g~i~grG~~D~k~~~a~~l~a~~~l~~~~- 124 (375)
T TIGR01910 52 GKVVVKEPGNG------NEKSLIFNGHYDVVPAGDLELWKTDPFKPVEKDGKLYGRGATDMKGGLVALLYALKAIREAG- 124 (375)
T ss_pred cceEEeccCCC------CCCEEEEecccccccCCChhhCcCCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHHcC-
Confidence 36777777743 25899999999999863 1 024689999999999999999997753
Q ss_pred CCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccc
Q 017128 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSV 312 (376)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~i 312 (376)
..++++|.|+++.+||.|..|++.++++. ..++.+++|+.|.-
T Consensus 125 ---~~~~~~i~~~~~~~EE~g~~G~~~~~~~~---~~~~~d~~i~~~~~ 167 (375)
T TIGR01910 125 ---IKPNGNIILQSVVDEESGEAGTLYLLQRG---YFKDADGVLIPEPS 167 (375)
T ss_pred ---CCCCccEEEEEEcCcccCchhHHHHHHcC---CCCCCCEEEECCCC
Confidence 34678999999999999999999999863 12345677777754
No 17
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.6e-06 Score=83.32 Aligned_cols=110 Identities=15% Similarity=0.238 Sum_probs=87.1
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTS 279 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~ 279 (376)
..|++.++... ..++.|+.+|||+--.-++..-||.|.+--+|+||++||.+.+....+..++.-++..+||+
T Consensus 105 f~nii~tl~~~-------A~r~lVlachydsk~~p~~~~vgatdsAvpcamll~laq~l~~~~~~~~~~s~lsL~LvFFD 177 (338)
T KOG3946|consen 105 FNNLIATLDPN-------ASRYLVLACHYDSKIFPGGMFVGATDSAVPCAMLLNLAQALDKILCSKVSASQLSLQLVFFD 177 (338)
T ss_pred eeeEEEecCCC-------cchheeeecccccccCCCcceEeeccccccHHHHHHHHHHHHHHHhcccCcCceeEEEEEec
Confidence 46899998764 36899999999998654455589999999999999999999875433345678899999999
Q ss_pred CCCC--------CCcchHHHHHhhhH----h-----hhcCeeEEEEeccccCCC
Q 017128 280 GGPY--------NYNGTHKWLRSFDQ----R-----LRESIDYAICLNSVGSWN 316 (376)
Q Consensus 280 gEe~--------g~~GS~~~ve~~~~----~-----~~~~i~~vInLD~ig~~~ 316 (376)
|||. ...||++..+.+.. . .++.|+..+-+|-+|..+
T Consensus 178 GEEAf~eW~p~DSlYGsRhLA~~~~sw~~~~~r~~~~ld~idl~vLldllga~~ 231 (338)
T KOG3946|consen 178 GEEAFEEWGPEDSLYGSRHLAAKWESWPHSGIRGDLLLDGIDLLVLLDLLGAPN 231 (338)
T ss_pred cHHHHhhcCCccccchHHHHHHHHhccCCCCCccccccccchHhhhHHHhcCCC
Confidence 9882 57899999887431 1 467788888888888873
No 18
>PRK09133 hypothetical protein; Provisional
Probab=98.25 E-value=5.8e-06 Score=85.52 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=76.7
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~-------~---------~~~~GAddn~SGva~LLElar~fs~l~~ 263 (376)
..||+++++|.+ +.+.|++.+|+|+++.. | -++.|+.|+-+|++++|++++.|.+..
T Consensus 88 ~~nli~~~~g~~------~~~~lll~~H~DtVp~~~~~W~~dPf~~~~~dg~iyGRGa~D~Kg~~aa~l~a~~~l~~~~- 160 (472)
T PRK09133 88 KGNLVARLRGTD------PKKPILLLAHMDVVEAKREDWTRDPFKLVEENGYFYGRGTSDDKADAAIWVATLIRLKREG- 160 (472)
T ss_pred ceeEEEEecCCC------CCCcEEEEeecccCCCChhcCCCCCCcceEeCCEEEecCcccchHHHHHHHHHHHHHHhcC-
Confidence 469999998864 24789999999999852 1 146899999999999999999987652
Q ss_pred CCCCCCceeEEEEEeCCCC-CCCcchHHHHHhhhHhhhcCeeEEEE
Q 017128 264 NPKTRGRYNILFGLTSGGP-YNYNGTHKWLRSFDQRLRESIDYAIC 308 (376)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe-~g~~GS~~~ve~~~~~~~~~i~~vIn 308 (376)
..++++|.|+++..|| .|..|++.+++++... -+..++|+
T Consensus 161 ---~~~~~~i~~~~~~dEE~~g~~G~~~l~~~~~~~--~~~~~~i~ 201 (472)
T PRK09133 161 ---FKPKRDIILALTGDEEGTPMNGVAWLAENHRDL--IDAEFALN 201 (472)
T ss_pred ---CCCCCCEEEEEECccccCccchHHHHHHHHhhc--cCeEEEEE
Confidence 3578899999999999 8899999999875421 13456666
No 19
>PRK08596 acetylornithine deacetylase; Validated
Probab=98.24 E-value=5.7e-06 Score=84.41 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=77.7
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-----------------~~~~GAddn~SGva~LLElar~fs~l~ 262 (376)
..||+++++|..+ ...|+|++.+|+|+++..+ -++.|+.|+-+|++++|..++.|.+..
T Consensus 62 ~~nvia~~~g~~~----~~~~~lll~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~a~~l~a~~~l~~~~ 137 (421)
T PRK08596 62 DPNVVGVKKGTES----DAYKSLIINGHMDVAEVSADEAWETNPFEPTIKDGWLYGRGAADMKGGLAGALFAIQLLHEAG 137 (421)
T ss_pred CceEEEEecCCCC----CCCcEEEEeccccccCCCCccccccCCCCcEEECCEEEeccccccchHHHHHHHHHHHHHHcC
Confidence 3699999988531 1247899999999986521 235799999999999999999998753
Q ss_pred CCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEecc
Q 017128 263 SNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (376)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ 311 (376)
..++.+|.|++..+||.|..|+++++++.. ..+++|+.|-
T Consensus 138 ----~~~~~~v~~~~~~dEE~g~~G~~~~~~~~~-----~~d~~i~~ep 177 (421)
T PRK08596 138 ----IELPGDLIFQSVIGEEVGEAGTLQCCERGY-----DADFAVVVDT 177 (421)
T ss_pred ----CCCCCcEEEEEEeccccCCcCHHHHHhcCC-----CCCEEEECCC
Confidence 356789999999999999899999987631 2457777774
No 20
>TIGR01883 PepT-like peptidase T-like protein. This model represents a clade of enzymes closely related to Peptidase T, an aminotripeptidase found in bacteria. This clade consists of gram positive bacteria of which several additionally contain a Peptidase T gene.
Probab=98.17 E-value=9.8e-06 Score=80.42 Aligned_cols=84 Identities=24% Similarity=0.232 Sum_probs=67.5
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC----------CCCCCC----CCchhHHHHHHHHHHHHHhccCCC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP----------ALSVGS----DSNGSGVVALLEVARLFSLLYSNP 265 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~----------~~~~GA----ddn~SGva~LLElar~fs~l~~~~ 265 (376)
..|+++.++|.. +.|+|++.+|+|+++..+ -++.|+ .|.-+|++++|++++.|.+..
T Consensus 49 ~~~~~~~~~g~~------~~~~i~l~~H~D~V~~~~~~~~~~~~~~~~g~G~~~~g~D~k~g~a~~l~~~~~l~~~~--- 119 (361)
T TIGR01883 49 DNNLIARLPGTV------KFDTIFFCGHMDTVPPGAGPEPVVEDGIFTSLGGTILGADDKAGVAAMLEAMDVLSTEE--- 119 (361)
T ss_pred CceEEEEEeCCC------CCCcEEEEeeccccCCCCCCCceecCCeEecCCCeEeeccccHHHHHHHHHHHHHHhcC---
Confidence 469999998764 257999999999998532 134566 577799999999999987742
Q ss_pred CCCCceeEEEEEeCCCCCCCcchHHHHHh
Q 017128 266 KTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (376)
Q Consensus 266 ~~~p~~~I~F~~~~gEe~g~~GS~~~ve~ 294 (376)
.++.+|.|+++.+||.|..|++.|++.
T Consensus 120 --~~~~~v~~~~~~~EE~g~~G~~~~~~~ 146 (361)
T TIGR01883 120 --TPHGTIEFIFTVKEELGLIGMRLFDES 146 (361)
T ss_pred --CCCCCEEEEEEcccccCchhHhHhChh
Confidence 256799999999999999999988764
No 21
>PRK13381 peptidase T; Provisional
Probab=98.16 E-value=1.3e-05 Score=81.17 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=67.5
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCC------------------------------------------CC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPA------------------------------------------LS 238 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~------------------------------------------~~ 238 (376)
.||+|+++|..+ ..|+|++.+|+|+++..+. ++
T Consensus 55 ~nvi~~~~g~~~-----~~~~lll~~H~D~Vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 129 (404)
T PRK13381 55 AIVTAKLPGNTP-----GAPRIGFIAHLDTVDVGLSPDIHPQILRFDGGDLCLNAEQGIWLRTAEHPELLNYQGEDIIFS 129 (404)
T ss_pred eEEEEEEecCCC-----CCCeEEEEEEecCCCccCCCCcCcEEEecCCCceecCCccceeechHhChhHHhccCCcEEeC
Confidence 599999988642 2489999999999976321 22
Q ss_pred CCC----CCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHh
Q 017128 239 VGS----DSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (376)
Q Consensus 239 ~GA----ddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~ 294 (376)
-|+ .|.-+|++++|..++.|.+.. .++.+|.|++..+||.|..|++.++.+
T Consensus 130 rG~~~~g~DmKgg~aa~l~a~~~l~~~~-----~~~g~i~~~~~~dEE~g~~G~~~~~~~ 184 (404)
T PRK13381 130 DGTSVLGADNKAAIAVVMTLLENLTENE-----VEHGDIVVAFVPDEEIGLRGAKALDLA 184 (404)
T ss_pred CCccccccccHHHHHHHHHHHHHHHhcC-----CCCCCEEEEEEcccccccccHHHHHHh
Confidence 367 889999999999999997642 235689999999999999999999764
No 22
>PRK12891 allantoate amidohydrolase; Reviewed
Probab=98.15 E-value=7.7e-06 Score=83.30 Aligned_cols=78 Identities=14% Similarity=0.057 Sum_probs=64.5
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~g 280 (376)
.|++++++|.+. ..|.|++.+|+|+++. .|.-|.-+|++++|++++.|.+.. .+++++|.|+++..
T Consensus 63 gNl~a~~~g~~~-----~~~~l~~~~H~DtVp~-----gg~~D~k~Gv~a~l~a~~~l~~~~----~~~~~~i~v~~~~d 128 (414)
T PRK12891 63 GNLFARRAGRDP-----DAAPVMTGSHADSQPT-----GGRYDGIYGVLGGLEVVRALNDAG----IETERPVDVVIWTN 128 (414)
T ss_pred CCEEEEecCCCC-----CCCeEEEEecccCCCC-----CccccchhhHHHHHHHHHHHHHcC----CCCCCCeEEEEecc
Confidence 499999998642 2589999999999964 355688999999999999998764 45788999999999
Q ss_pred CCCC-----CcchHHHH
Q 017128 281 GPYN-----YNGTHKWL 292 (376)
Q Consensus 281 Ee~g-----~~GS~~~v 292 (376)
||.+ +.||+.|.
T Consensus 129 EE~~~f~~~~~Gs~~~~ 145 (414)
T PRK12891 129 EEGSRFAPSMVGSGVFF 145 (414)
T ss_pred cccCcCCcccccHHHHh
Confidence 9974 57998663
No 23
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=98.13 E-value=1.3e-05 Score=80.41 Aligned_cols=100 Identities=21% Similarity=0.243 Sum_probs=75.4
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-----------------~~~~GAddn~SGva~LLElar~fs~l~ 262 (376)
..|+++.++|.. +.++|++.+|+|+++..+ -++.|+.|+-.|++++|+.++.|.+..
T Consensus 63 ~~nl~~~~~g~~------~~~~lll~~H~Dtvp~~~~~~W~~~p~~~~~~~g~lyGrG~~D~K~g~~a~l~a~~~l~~~~ 136 (400)
T PRK13983 63 RPNIVAKIPGGD------GKRTLWIISHMDVVPPGDLSLWETDPFKPVVKDGKIYGRGSEDNGQGIVSSLLALKALMDLG 136 (400)
T ss_pred CccEEEEecCCC------CCCeEEEEeeccccCCCCcccccCCCCcceeeCCEEEecCccCccchHHHHHHHHHHHHHhC
Confidence 479999998753 246999999999998631 135788999999999999999988643
Q ss_pred CCCCCCCceeEEEEEeCCCCCCC-cchHHHHHhhhHhhhcCeeEEEEec
Q 017128 263 SNPKTRGRYNILFGLTSGGPYNY-NGTHKWLRSFDQRLRESIDYAICLN 310 (376)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g~-~GS~~~ve~~~~~~~~~i~~vInLD 310 (376)
.+++.+|.|++..+||.|- .|.+++++++... .....++|+.|
T Consensus 137 ----~~~~~~v~~~~~~dEE~g~~~g~~~~~~~~~~~-~~~~d~~i~~~ 180 (400)
T PRK13983 137 ----IRPKYNLGLAFVSDEETGSKYGIQYLLKKHPEL-FKKDDLILVPD 180 (400)
T ss_pred ----CCCCCcEEEEEEeccccCCcccHHHHHhhcccc-cCCCCEEEEec
Confidence 3567899999999999877 4888888764221 23345666544
No 24
>PRK07906 hypothetical protein; Provisional
Probab=98.11 E-value=1.4e-05 Score=81.39 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=70.9
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~-------~---------~~~~GAddn~SGva~LLElar~fs~l~~ 263 (376)
..|++++++|..+ ..+.|++.+|+|+++.. | -++.|+.|+-+|++++|++++.|.+..
T Consensus 51 ~~nv~~~~~g~~~-----~~~~lll~~H~DtVp~~~~~W~~~Pf~~~~~dg~iyGrG~~D~Kg~~a~~l~a~~~l~~~~- 124 (426)
T PRK07906 51 RANVVARLPGADP-----SRPALLVHGHLDVVPAEAADWSVHPFSGEIRDGYVWGRGAVDMKDMDAMMLAVVRHLARTG- 124 (426)
T ss_pred ceEEEEEEeCCCC-----CCCcEEEEcccccCCCCcccCccCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHcC-
Confidence 4699999988542 25789999999999862 1 145799999999999999999998753
Q ss_pred CCCCCCceeEEEEEeCCCCCC-CcchHHHHHhh
Q 017128 264 NPKTRGRYNILFGLTSGGPYN-YNGTHKWLRSF 295 (376)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g-~~GS~~~ve~~ 295 (376)
..|+++|.|+++..||.+ ..|++.++++.
T Consensus 125 ---~~~~~~i~~~~~~dEE~g~~~g~~~l~~~~ 154 (426)
T PRK07906 125 ---RRPPRDLVFAFVADEEAGGTYGAHWLVDNH 154 (426)
T ss_pred ---CCCCccEEEEEecCcccchhhhHHHHHHHH
Confidence 357889999999999985 57999998864
No 25
>PRK09104 hypothetical protein; Validated
Probab=98.10 E-value=1.8e-05 Score=81.69 Aligned_cols=99 Identities=11% Similarity=0.181 Sum_probs=78.1
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC----------------------CCCCCCCCchhHHHHHHHHHHHH
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP----------------------ALSVGSDSNGSGVVALLEVARLF 258 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~----------------------~~~~GAddn~SGva~LLElar~f 258 (376)
.||+++++|.++ ..|+|++.+|+|+++..+ -++.|+.|+-.|++++|++++.|
T Consensus 69 ~~l~a~~~g~~~-----~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~~~~~~~~lyGRG~~D~Kg~laa~l~a~~~l 143 (464)
T PRK09104 69 PMVVAHHEGPTG-----DAPHVLFYGHYDVQPVDPLDLWESPPFEPRIKETPDGRKVIVARGASDDKGQLMTFVEACRAW 143 (464)
T ss_pred CEEEEEecCCCC-----CCCEEEEEecccCCCCCCcccCCCCCCcceEecCcCCcceEEEecccCCcHHHHHHHHHHHHH
Confidence 599999987532 368999999999976421 24679999999999999999999
Q ss_pred HhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEec
Q 017128 259 SLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (376)
Q Consensus 259 s~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD 310 (376)
.+.. ..++.+|.|++...||.|-.|.++|+.+.... .+.+++|+.|
T Consensus 144 ~~~~----~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~--~~~d~~iv~E 189 (464)
T PRK09104 144 KAVT----GSLPVRVTILFEGEEESGSPSLVPFLEANAEE--LKADVALVCD 189 (464)
T ss_pred HHhc----CCCCCcEEEEEECccccCCccHHHHHHhhHHh--cCCCEEEEeC
Confidence 8863 23467899999999999999999999864221 2457788877
No 26
>PRK05469 peptidase T; Provisional
Probab=98.06 E-value=2.6e-05 Score=79.12 Aligned_cols=85 Identities=15% Similarity=0.190 Sum_probs=66.0
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCC------------------------------------------CC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPA------------------------------------------LS 238 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~------------------------------------------~~ 238 (376)
.||+|.++|... .+.|+|++.+|+|+++.++. ++
T Consensus 56 ~~v~~~~~g~~~----~~~~~i~l~~H~D~vp~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 131 (408)
T PRK05469 56 GYVMATLPANVD----KDVPTIGFIAHMDTAPDFSGKNVKPQIIENYDGGDIALGDGNEVLSPAEFPELKNYIGQTLITT 131 (408)
T ss_pred eEEEEEecCCCC----CCCCeEEEEEeccCCCCCCCCCCCCEEeccCCCcceecCCCceEechHhCchHHhccCCCEEEc
Confidence 489999988631 13699999999999976430 12
Q ss_pred CCC----CCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHh
Q 017128 239 VGS----DSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (376)
Q Consensus 239 ~GA----ddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~ 294 (376)
-|+ .|+-+|++++|..++.|.+.. ..++.+|.|++..+||.| .|++.++.+
T Consensus 132 rG~~~lg~D~Kgglaa~l~a~~~l~~~~----~~~~g~v~~~f~~dEE~g-~Ga~~~~~~ 186 (408)
T PRK05469 132 DGTTLLGADDKAGIAEIMTALEYLIAHP----EIKHGDIRVAFTPDEEIG-RGADKFDVE 186 (408)
T ss_pred CCCEeecccchHHHHHHHHHHHHHHhCC----CCCCCCEEEEEecccccC-CCHHHhhhh
Confidence 255 788899999999999997652 235679999999999998 899988743
No 27
>PRK12892 allantoate amidohydrolase; Reviewed
Probab=98.05 E-value=1.8e-05 Score=80.16 Aligned_cols=79 Identities=22% Similarity=0.190 Sum_probs=64.4
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~g 280 (376)
.|++++++|..+ .|.|++.+|+|+++.. |-.|+-.|++++|++++.|.+.. .+++.+|.|+++..
T Consensus 62 ~nl~a~~~g~~~------~~~l~l~gH~DtVp~~-----g~~dg~~Gvaa~l~a~~~l~~~~----~~~~~~i~~~~~~d 126 (412)
T PRK12892 62 GNVFGRLPGPGP------GPALLVGSHLDSQNLG-----GRYDGALGVVAGLEAARALNEHG----IATRHPLDVVAWCD 126 (412)
T ss_pred CcEEEEecCCCC------CCeEEEEccccCCCCC-----CcccchHHHHHHHHHHHHHHHcC----CCCCCCeEEEEecC
Confidence 499999988542 4789999999999752 33455679999999999998753 45788999999999
Q ss_pred CCC-----CCcchHHHHHh
Q 017128 281 GPY-----NYNGTHKWLRS 294 (376)
Q Consensus 281 Ee~-----g~~GS~~~ve~ 294 (376)
||. ++.||+.++.+
T Consensus 127 EE~~~~~~~~~Gs~~~~~~ 145 (412)
T PRK12892 127 EEGSRFTPGFLGSRAYAGR 145 (412)
T ss_pred cccccccCccccHHHHHcC
Confidence 997 57899999854
No 28
>PRK09290 allantoate amidohydrolase; Reviewed
Probab=98.05 E-value=1.9e-05 Score=80.36 Aligned_cols=80 Identities=23% Similarity=0.182 Sum_probs=65.1
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~g 280 (376)
.|++++++|... ..|.|++.+|+|+++. .|.-|+-.|+|++++.++.|.+.. ..|+++|.|+++..
T Consensus 60 ~nl~a~~~g~~~-----~~~~l~l~gH~DtVp~-----~g~~d~k~g~aa~l~a~~~l~~~~----~~~~~~i~~~~~~d 125 (413)
T PRK09290 60 GNLFGRLEGRDP-----DAPAVLTGSHLDTVPN-----GGRFDGPLGVLAGLEAVRTLNERG----IRPRRPIEVVAFTN 125 (413)
T ss_pred CcEEEEecCCCC-----CCCEEEEecCccCCCC-----CCCcCCHHHHHHHHHHHHHHHHcC----CCCCCCeEEEEEcC
Confidence 499999987431 2578999999999975 355577889999999999998753 35678999999999
Q ss_pred CCC-----CCcchHHHHHh
Q 017128 281 GPY-----NYNGTHKWLRS 294 (376)
Q Consensus 281 Ee~-----g~~GS~~~ve~ 294 (376)
||. |..|++.+++.
T Consensus 126 EE~g~~g~~~~G~~~~~~~ 144 (413)
T PRK09290 126 EEGSRFGPAMLGSRVFTGA 144 (413)
T ss_pred CccccccCccccHHHHHcc
Confidence 998 57899998854
No 29
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=98.03 E-value=2.5e-05 Score=78.08 Aligned_cols=96 Identities=19% Similarity=0.141 Sum_probs=74.2
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~--------~---------~~~~GAddn~SGva~LLElar~fs~l~ 262 (376)
..|+++.+ |.+ .|.|++.+|+|+++.. | -++.|+.|+-.|++++|..++.|.+..
T Consensus 48 ~~~l~a~~-g~~-------~~~il~~~H~DtVp~~~~~~w~~~Pf~~~~~~g~l~GrG~~D~Kgg~aa~l~a~~~l~~~~ 119 (377)
T PRK08588 48 RANLVAEI-GSG-------SPVLALSGHMDVVAAGDVDKWTYDPFELTEKDGKLYGRGATDMKSGLAALVIAMIELKEQG 119 (377)
T ss_pred CceEEEEe-CCC-------CceEEEEeeecccCCCCcccCcCCCCCeEEECCEEEecCcccccchHHHHHHHHHHHHHcC
Confidence 46999998 422 3799999999999862 1 125688899999999999999987753
Q ss_pred CCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEec
Q 017128 263 SNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (376)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD 310 (376)
..++.+|.|++..+||.|..|++.++++. ..++++++|+.+
T Consensus 120 ----~~~~~~i~l~~~~dEE~g~~G~~~~~~~~---~~~~~d~~i~~e 160 (377)
T PRK08588 120 ----QLLNGTIRLLATAGEEVGELGAKQLTEKG---YADDLDALIIGE 160 (377)
T ss_pred ----CCCCCcEEEEEEcccccCchhHHHHHhcC---ccCCCCEEEEec
Confidence 34678999999999999999999999863 133455666555
No 30
>PRK12893 allantoate amidohydrolase; Reviewed
Probab=98.03 E-value=1.9e-05 Score=79.96 Aligned_cols=80 Identities=24% Similarity=0.182 Sum_probs=65.4
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~g 280 (376)
.|++++++|..+ +.|.|++.+|+|+++. .|.-|+-.|++++|++++.|.+.. ..++.+|.|+++.+
T Consensus 63 ~n~~a~~~g~~~-----~~~~l~l~~H~DtVp~-----~g~~dgk~gvaa~l~a~~~l~~~~----~~~~~~v~~~~~~d 128 (412)
T PRK12893 63 GNLFGRRAGTDP-----DAPPVLIGSHLDTQPT-----GGRFDGALGVLAALEVVRTLNDAG----IRTRRPIEVVSWTN 128 (412)
T ss_pred CcEEEEeCCCCC-----CCCEEEEEecccCCCC-----CCcccchhhHHHHHHHHHHHHHcC----CCCCCCeEEEEEcc
Confidence 399999988541 2589999999999974 344567789999999999998753 35688999999999
Q ss_pred CCCC-----CcchHHHHHh
Q 017128 281 GPYN-----YNGTHKWLRS 294 (376)
Q Consensus 281 Ee~g-----~~GS~~~ve~ 294 (376)
||.+ ..|++.+...
T Consensus 129 EE~g~~~~~~~G~~~~~~~ 147 (412)
T PRK12893 129 EEGARFAPAMLGSGVFTGA 147 (412)
T ss_pred ccccccccccccHHHHhCc
Confidence 9985 8899988754
No 31
>TIGR01882 peptidase-T peptidase T. This model represents a tripeptide aminopeptidase known as Peptidase T, which has a substrate preference for hydrophobic peptides.
Probab=97.99 E-value=3.3e-05 Score=78.66 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=62.6
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC---------------------------------------------
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------------------------------------------- 234 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~--------------------------------------------- 234 (376)
..||+|+++|... .+.|.|+++||+||+...
T Consensus 57 ~gnv~~~~~~~~~----~~~~~i~~~aHmDTv~~~~~~v~p~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 132 (410)
T TIGR01882 57 NGYVIATIPSNTD----KDVPTIGFLAHVDTADFNGENVNPQIIENYDGESIIQLGDLEFTLDPDQFPNLSGYKGQTLIT 132 (410)
T ss_pred ceEEEEEecCCCC----CCCCEEEEEEecccCcCCCCCCCCEEEecCCCceeeecCCCCeEEChHhChhHHhccCceEEE
Confidence 5699999998642 124999999999998631
Q ss_pred --CCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHH
Q 017128 235 --PALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLR 293 (376)
Q Consensus 235 --~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve 293 (376)
.+.-.| .|+=+|+|++|++++.|.+.. ..++.+|.|+++.+||.| .|++.+..
T Consensus 133 ~~g~~l~G-~D~KgglAa~l~A~~~L~e~~----~~~~g~I~~~ft~dEE~g-~Ga~~l~~ 187 (410)
T TIGR01882 133 TDGTTLLG-ADDKAGIAEIMTAADYLINHP----EIKHGTIRVAFTPDEEIG-RGAHKFDV 187 (410)
T ss_pred cCCCEeec-ccCHHHHHHHHHHHHHHHhCC----CCCCCCEEEEEECcccCC-cCcchhhh
Confidence 011245 455678999999999998742 124668999999999988 59988764
No 32
>PRK07473 carboxypeptidase; Provisional
Probab=97.98 E-value=4.8e-05 Score=76.68 Aligned_cols=99 Identities=15% Similarity=0.111 Sum_probs=76.7
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC------C-------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA------P-------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKT 267 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~------~-------~~~~GAddn~SGva~LLElar~fs~l~~~~~~ 267 (376)
.|++++++|... ..|.|++.+|+|+++.. | -+..|+.|.=+|++++|..++.|.+.. .
T Consensus 62 ~~~~~~~~~~~~-----~~~~lll~gH~DtV~~~~~~~~~p~~~~~g~lyGrG~~D~Kgglaa~l~A~~~l~~~~----~ 132 (376)
T PRK07473 62 DCVRARFPHPRQ-----GEPGILIAGHMDTVHPVGTLEKLPWRREGNKCYGPGILDMKGGNYLALEAIRQLARAG----I 132 (376)
T ss_pred CeEEEEeCCCCC-----CCCeEEEEecCCCCCCCCCccCCCeEEECCEEEcCchhhchHHHHHHHHHHHHHHHcC----C
Confidence 489999876321 25789999999998531 1 257899999999999999999997753 2
Q ss_pred CCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccc
Q 017128 268 RGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSV 312 (376)
Q Consensus 268 ~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~i 312 (376)
.++.+|.|++...||.|..|++.|+++.. ...+++|+.|--
T Consensus 133 ~~~~~v~~~~~~dEE~g~~g~~~~~~~~~----~~~d~~iv~ep~ 173 (376)
T PRK07473 133 TTPLPITVLFTPDEEVGTPSTRDLIEAEA----ARNKYVLVPEPG 173 (376)
T ss_pred CCCCCEEEEEeCCcccCCccHHHHHHHhh----ccCCEEEEeCCC
Confidence 34568999999999999999999998632 234677877754
No 33
>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase.
Probab=97.95 E-value=3.1e-05 Score=80.46 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=63.4
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC--------------------CCCCCCC---CchhHHHHHHHHHHH
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP--------------------ALSVGSD---SNGSGVVALLEVARL 257 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~--------------------~~~~GAd---dn~SGva~LLElar~ 257 (376)
.|++++++|.... ...|.|++.+|+|+++..+ -+++|+. |+..|++++|++++.
T Consensus 47 ~n~~~~~~~~~g~---~~~~~l~l~~HlDtV~~~~~~~~~~w~~~p~~~~~~~~~i~GrG~~lg~D~k~gva~~l~~~~~ 123 (477)
T TIGR01893 47 GNVLIRKPATPGY---ENHPPIVLQGHMDMVCEKNEDSLHDFEKDPIELIIDGDWLKARGTTLGADNGIGVAMGLAILED 123 (477)
T ss_pred CeEEEEEcCCCCC---CCCCeEEEEeeccccCCCCCCCCCCCCCCCeEEEEeCCEEEECCccccccccHHHHHHHHHHhc
Confidence 5999999885321 1358899999999997531 1356663 889999999998774
Q ss_pred HHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHh
Q 017128 258 FSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (376)
Q Consensus 258 fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~ 294 (376)
. ..+..+|.++++..||.|+.|++.+..+
T Consensus 124 ---~-----~~~~~~i~~~~~~dEE~g~~Gs~~l~~~ 152 (477)
T TIGR01893 124 ---N-----NLKHPPLELLFTVDEETGMDGALGLDEN 152 (477)
T ss_pred ---C-----CCCCCCEEEEEEeccccCchhhhhcChh
Confidence 1 1235589999999999999999999765
No 34
>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.94 E-value=5.5e-05 Score=76.88 Aligned_cols=101 Identities=16% Similarity=0.101 Sum_probs=72.4
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC------C---------CCCCCCCCchhHHHHHHHHHHHHHhccCC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA------P---------ALSVGSDSNGSGVVALLEVARLFSLLYSN 264 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~------~---------~~~~GAddn~SGva~LLElar~fs~l~~~ 264 (376)
-.|++|+++|.. +.|.|++.+|+|+++.. | -++.|+.|.=+|++++|..++.|.+..
T Consensus 71 ~~nlia~~~g~~------~~~~i~l~gH~DvVp~~~~W~~~Pf~~~~~dg~iyGrGa~D~Kg~~aa~l~a~~~l~~~~-- 142 (427)
T PRK13013 71 RWNLVARRQGAR------DGDCVHFNSHHDVVEVGHGWTRDPFGGEVKDGRIYGRGACDMKGGLAASIIAAEAFLAVY-- 142 (427)
T ss_pred cceEEEEecCCC------CCCEEEEEeccccCCCCCCCcCCCCCceEECCEEEeccccccchHHHHHHHHHHHHHHhC--
Confidence 469999998754 25789999999999751 1 135589999999999999999998763
Q ss_pred CCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEec
Q 017128 265 PKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (376)
Q Consensus 265 ~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD 310 (376)
..++.+|.|++...||.|-.|..+|+.+.......+++++|..+
T Consensus 143 --~~~~~~v~~~~~~dEE~g~~~g~~~l~~~~~~~~~~~d~~i~~e 186 (427)
T PRK13013 143 --PDFAGSIEISGTADEESGGFGGVAYLAEQGRFSPDRVQHVIIPE 186 (427)
T ss_pred --CCCCccEEEEEEeccccCChhHHHHHHhcCCccccCCCEEEEec
Confidence 34578999999999998766555555432110011345666655
No 35
>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase. This model represents a family of eukaryotic N-acyl-L-amino-acid amidohydrolases active on fatty acid and acetyl amides of L-amino acids.
Probab=97.94 E-value=6.3e-05 Score=75.98 Aligned_cols=99 Identities=15% Similarity=0.174 Sum_probs=74.4
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-------C----------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-------P----------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~-------~----------~~~~GAddn~SGva~LLElar~fs~l~ 262 (376)
..|++++++|.++ ..|+|++.+|+|+++.. | -++.|+.|+=+|++++|.+++.|.+..
T Consensus 57 ~~~l~~~~~g~~~-----~~~~i~l~~H~DvVp~~~~~W~~~Pf~~~~~~dg~iyGrG~~D~K~~~aa~l~a~~~l~~~~ 131 (400)
T TIGR01880 57 KPVVVLTWPGSNP-----ELPSILLNSHTDVVPVFREHWTHPPFSAFKDEDGNIYARGAQDMKCVGVQYLEAVRNLKASG 131 (400)
T ss_pred ceeEEEEEecCCC-----CCCeEEEEcccccCCCCcccCccCCccceecCCCeEEEcccccccHHHHHHHHHHHHHHHcC
Confidence 4589999988542 24799999999999852 1 135688888889999999999998753
Q ss_pred CCCCCCCceeEEEEEeCCCCCCC-cchHHHHHhhhHhhhcCeeEEEEec
Q 017128 263 SNPKTRGRYNILFGLTSGGPYNY-NGTHKWLRSFDQRLRESIDYAICLN 310 (376)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g~-~GS~~~ve~~~~~~~~~i~~vInLD 310 (376)
..++++|.|++..+||.|- .|.+.++++.. ...+++.+++|
T Consensus 132 ----~~~~~~v~l~~~~dEE~g~~~G~~~~~~~~~---~~~~~~~~~~d 173 (400)
T TIGR01880 132 ----FKFKRTIHISFVPDEEIGGHDGMEKFAKTDE---FKALNLGFALD 173 (400)
T ss_pred ----CCCCceEEEEEeCCcccCcHhHHHHHHHhhh---ccCCceEEEEc
Confidence 3467899999999999864 69998887621 23345566665
No 36
>PF09940 DUF2172: Domain of unknown function (DUF2172); InterPro: IPR012353 The proteins in this entry are encoded by genes located in polysaccharide biosynthesis gene clusters, and are therefore believed to be involved in polysaccharide biosynthesis. The ste gene cluster (for Streptomyces eps) is involved in exopolysaccharide EPS 139A biosynthesis in Streptomyces sp. 139 []. Members of this group exhibit distant sequence similarity to aminopeptidases (IPR007484 from INTERPRO, MEROPS peptidase family M28).; PDB: 3K9T_A.
Probab=97.93 E-value=0.00019 Score=72.03 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=69.6
Q ss_pred CCeEEEeccCCCcccCCCCcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHh
Q 017128 181 GGYKLVIPIAEPKKVASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSL 260 (376)
Q Consensus 181 ~~~~l~~~~~~~~~~~~~~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~ 260 (376)
..|++++.+ ...+-...--.-.++|.. ++.|++++|..|= .-|+||-||.+++.+|||.|+.
T Consensus 102 g~Y~V~IdS----~l~~G~L~ygE~~ipG~s-------~~EillsthiCHP-------smANdnLSG~~v~~~La~~L~~ 163 (386)
T PF09940_consen 102 GEYEVVIDS----TLEDGSLTYGEFVIPGES-------DEEILLSTHICHP-------SMANDNLSGPAVLTFLAKWLKQ 163 (386)
T ss_dssp SEEEEEEEE----EEES-EEEEEEEEE--SS-------S-EEEEEEE-----------S-TTTTHHHHHHHHHHHHHHTT
T ss_pred CceEEEEee----eecCCceeEEEEEecCCC-------CCeEEEEEeccCc-------ccccccccHHHHHHHHHHHHhc
Confidence 457766632 233333444455668854 6799999999985 3589999999999999999998
Q ss_pred ccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccccCC
Q 017128 261 LYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSW 315 (376)
Q Consensus 261 l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig~~ 315 (376)
.. ++++-.|+|.. +-+||-.|+..+...+.++|.+-++|.++|..
T Consensus 164 ~~------~rytYRflf~P----eTIGsI~yLskn~~~l~~~v~~G~vLtcvGD~ 208 (386)
T PF09940_consen 164 LP------NRYTYRFLFVP----ETIGSITYLSKNLDELKKNVKAGLVLTCVGDD 208 (386)
T ss_dssp S--------SSEEEEEEE-----TTHHHHHHHHH-GGGGGG-EEEEEE--S--SS
T ss_pred CC------cCceEEEEEcc----ccHHHHHHHHHCHHHHhhheeeeEEEEEecCC
Confidence 74 35888888887 77999999998777656669999999999975
No 37
>PRK06915 acetylornithine deacetylase; Validated
Probab=97.93 E-value=4.4e-05 Score=77.64 Aligned_cols=85 Identities=18% Similarity=0.111 Sum_probs=69.4
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~--------~---------~~~~GAddn~SGva~LLElar~fs~l~ 262 (376)
..||+|+++|.. +.|+|++.+|+|+++.. | -++.|+.|+-+|++++|..++.|.+..
T Consensus 80 ~~nlia~~~g~~------~~~~l~l~~H~Dtvp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~aa~l~a~~~l~~~~ 153 (422)
T PRK06915 80 SPNIVATLKGSG------GGKSMILNGHIDVVPEGDVNQWDHHPYSGEVIGGRIYGRGTTDMKGGNVALLLAMEALIESG 153 (422)
T ss_pred CceEEEEEcCCC------CCCeEEEEeeccccCCCCcccCcCCCCCceEECCEEEecCcccchHHHHHHHHHHHHHHHcC
Confidence 589999998854 25799999999999862 1 146789899999999999999998753
Q ss_pred CCCCCCCceeEEEEEeCCCCCCCcchHHHHHh
Q 017128 263 SNPKTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (376)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~ 294 (376)
..++.+|.|+++.+||.|-.|+...+.+
T Consensus 154 ----~~~~~~v~~~~~~dEE~g~~G~~~~~~~ 181 (422)
T PRK06915 154 ----IELKGDVIFQSVIEEESGGAGTLAAILR 181 (422)
T ss_pred ----CCCCCcEEEEEecccccCCcchHHHHhc
Confidence 3456789999999999888899888765
No 38
>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]
Probab=97.92 E-value=0.00017 Score=73.00 Aligned_cols=85 Identities=15% Similarity=0.124 Sum_probs=71.6
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-----------------~~~~GAddn~SGva~LLElar~fs~l~ 262 (376)
-++++-+++|+++ ..+-|++.+|.|+++.+. -++-||.|.=+-.++.||.+|.|..-
T Consensus 74 ~~~~l~T~~GS~P-----~L~silL~SH~DVVP~f~e~W~h~Pfsa~~~~~g~IyaRGaqD~K~~~va~leAir~L~~~- 147 (420)
T KOG2275|consen 74 KYVLLYTWLGSDP-----ELPSILLNSHTDVVPVFREKWTHPPFSAFKDEDGNIYARGAQDMKCVGVAYLEAIRNLKAS- 147 (420)
T ss_pred eeEEEEEeeCCCC-----CccceeeeccccccCCCcccCccCCccccccCCCcEEeccccchHhHHHHHHHHHHHHHhc-
Confidence 5688899999874 489999999999999852 14568888888888999999988764
Q ss_pred CCCCCCCceeEEEEEeCCCCCC-CcchHHHHH
Q 017128 263 SNPKTRGRYNILFGLTSGGPYN-YNGTHKWLR 293 (376)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g-~~GS~~~ve 293 (376)
+.+|+|+|...|.-+||.| ..|.+.|+.
T Consensus 148 ---g~kp~Rti~lsfvpDEEi~G~~Gm~~fa~ 176 (420)
T KOG2275|consen 148 ---GFKPKRTIHLSFVPDEEIGGHIGMKEFAK 176 (420)
T ss_pred ---CCCcCceEEEEecCchhccCcchHHHHhh
Confidence 3568999999998899976 999999998
No 39
>PRK07907 hypothetical protein; Provisional
Probab=97.88 E-value=8.1e-05 Score=76.58 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=74.4
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~--------~---------~~~~GAddn~SGva~LLElar~fs~l~ 262 (376)
..|++++++|.. ..|.|++.+|+|+++.. | -++.|+.|+-+|++++|..++.| .
T Consensus 70 ~~nl~a~~~~~~------~~~~lll~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l-~-- 140 (449)
T PRK07907 70 APAVIGTRPAPP------GAPTVLLYAHHDVQPPGDPDAWDSPPFELTERDGRLYGRGAADDKGGIAMHLAALRAL-G-- 140 (449)
T ss_pred CCEEEEEecCCC------CCCEEEEEcccCCCCCCCccccCCCCceeEEECCEEEECCccCCcHHHHHHHHHHHHh-c--
Confidence 469999998743 25799999999999762 1 14569999999999999999988 2
Q ss_pred CCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEecc
Q 017128 263 SNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (376)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ 311 (376)
..++.+|.|++.+.||.|-.|+++++++.... -+.+++|+.|.
T Consensus 141 ----~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~--~~~d~~iv~E~ 183 (449)
T PRK07907 141 ----GDLPVGVTVFVEGEEEMGSPSLERLLAEHPDL--LAADVIVIADS 183 (449)
T ss_pred ----cCCCCcEEEEEEcCcccCCccHHHHHHhchHh--hcCCEEEEecC
Confidence 13468999999999999889999999874321 12356676554
No 40
>PRK07338 hypothetical protein; Provisional
Probab=97.87 E-value=7e-05 Score=75.61 Aligned_cols=96 Identities=11% Similarity=0.079 Sum_probs=73.4
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--C-----------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--P-----------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKT 267 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~--~-----------~~~~GAddn~SGva~LLElar~fs~l~~~~~~ 267 (376)
.|++++++|.. .+.|++.+|+|+++.. | -++.|+.|.=+|++++|..++.|.+.. .
T Consensus 81 ~nl~a~~~~~~-------~~~lll~gH~DvVp~~~~Pf~~~~~~~~g~lyGrG~~DmKgg~aa~l~a~~~l~~~~----~ 149 (402)
T PRK07338 81 PALHVSVRPEA-------PRQVLLTGHMDTVFPADHPFQTLSWLDDGTLNGPGVADMKGGIVVMLAALLAFERSP----L 149 (402)
T ss_pred CeEEEEECCCC-------CccEEEEeecCccCCCCCcccCCeEeeCCEEECCcHHhhhHHHHHHHHHHHHHHhcC----C
Confidence 69999996532 3579999999999752 1 135688899999999999999997642 3
Q ss_pred CCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEecc
Q 017128 268 RGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (376)
Q Consensus 268 ~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ 311 (376)
.++.+|.|++..+||.|..|++.++++.. .+..++++++-
T Consensus 150 ~~~~~i~~~~~~dEE~g~~g~~~~~~~~~----~~~~~~i~~ep 189 (402)
T PRK07338 150 ADKLGYDVLINPDEEIGSPASAPLLAELA----RGKHAALTYEP 189 (402)
T ss_pred CCCCCEEEEEECCcccCChhhHHHHHHHh----ccCcEEEEecC
Confidence 45679999999999999999999998742 23355666654
No 41
>TIGR01891 amidohydrolases amidohydrolase. This model represents a subfamily of amidohydrolases which are a subset of those sequences detected by pfam01546. Included within this group are hydrolases of hippurate (N-benzylglycine), indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. These hydrolases are of the carboxypeptidase-type, most likely utilizing a zinc ion in the active site.
Probab=97.83 E-value=0.00012 Score=72.96 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=68.1
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------C--CCCCCCCchhHHHHHHHHHHHHHhccCCCC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------A--LSVGSDSNGSGVVALLEVARLFSLLYSNPK 266 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-----------~--~~~GAddn~SGva~LLElar~fs~l~~~~~ 266 (376)
..|+++++.|.. +.|.|++.+|+|+++..+ + ++.|+ .++++++|.+++.|.+..
T Consensus 43 ~~~vva~~~~~~------~~~~i~l~gH~DtVp~~~~~~~pf~~~~~g~l~g~G~---~~~~a~~l~a~~~l~~~~---- 109 (363)
T TIGR01891 43 ATGVVATIGGGK------PGPVVALRADMDALPIQEQTDLPYKSTNPGVMHACGH---DLHTAILLGTAKLLKKLA---- 109 (363)
T ss_pred CcEEEEEEeCCC------CCCEEEEEeccCCCCcccccCCCcccCCCCceecCcC---HHHHHHHHHHHHHHHhch----
Confidence 368999987643 247899999999997421 1 23343 267889999998888653
Q ss_pred CCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEecc
Q 017128 267 TRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (376)
Q Consensus 267 ~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ 311 (376)
.+++++|.|+++..||.+ .|++.++++. ..+++.++|+++-
T Consensus 110 ~~~~~~i~~~~~~dEE~~-~G~~~~~~~~---~~~~~d~~i~~e~ 150 (363)
T TIGR01891 110 DLLEGTVRLIFQPAEEGG-GGATKMIEDG---VLDDVDAILGLHP 150 (363)
T ss_pred hhCCceEEEEEeecCcCc-chHHHHHHCC---CCCCcCEEEEECC
Confidence 235679999999999985 7999998763 1345566776653
No 42
>PRK08201 hypothetical protein; Provisional
Probab=97.82 E-value=0.0001 Score=75.96 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=74.7
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-----------------~~~~GAddn~SGva~LLElar~fs~l~~ 263 (376)
.||++++.|.. ..|+|++.+|+|+++..+ -++.|+.|.=.|++++|+.++.|.+..
T Consensus 67 ~~l~a~~~~~~------~~~~lll~gH~DvVp~~~~~~W~~dPf~~~~~~g~lyGRG~~DmKgglaa~l~a~~~l~~~~- 139 (456)
T PRK08201 67 PIVYADWLHAP------GKPTVLIYGHYDVQPVDPLNLWETPPFEPTIRDGKLYARGASDDKGQVFMHLKAVEALLKVE- 139 (456)
T ss_pred CEEEEEecCCC------CCCEEEEEeccCCcCCCchhcccCCCCceEeECCEEEEEecccCcHHHHHHHHHHHHHHHhc-
Confidence 58999887642 257999999999987521 246799999999999999999997653
Q ss_pred CCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEec
Q 017128 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (376)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD 310 (376)
..++++|.|++...||.|-.|+.+|+++..... +.+++|+.|
T Consensus 140 ---~~~~~~i~~~~~~dEE~g~~g~~~~l~~~~~~~--~~d~~ii~e 181 (456)
T PRK08201 140 ---GTLPVNVKFCIEGEEEIGSPNLDSFVEEEKDKL--AADVVLISD 181 (456)
T ss_pred ---CCCCCCEEEEEEcccccCCccHHHHHHhhHHhc--cCCEEEEeC
Confidence 234679999999999999999999998743211 124566655
No 43
>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of proteins contains the metallopeptidases and non-peptidase homologues (amidohydrolases) that belong to the MEROPS peptidase family M20 (clan MH) []. The peptidases of this clan have two catalytic zinc ions at the active site, bound by His/Asp, Asp, Glu, Asp/Glu and His. The catalysed reaction involves the release of an N-terminal amino acid, usually neutral or hydrophobic, from a polypeptide []. The peptidase M20 family has four sub-families: M20A - type example, glutamate carboxypeptidase from Pseudomonas sp. RS16 (P06621 from SWISSPROT) M20B - type example, peptidase T from Escherichia coli (P29745 from SWISSPROT) M20C - type example, X-His dipeptidase from E. coli (P15288 from SWISSPROT) M20D - type example, carboxypeptidase Ss1 from Sulfolobus solfataricus (P80092 from SWISSPROT) ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3T68_A 3T6M_A 2F8H_A 3GB0_A 3IO1_B 2ZOF_A 2ZOG_B 3MRU_B 3N5F_A 1Z2L_B ....
Probab=97.80 E-value=9.7e-05 Score=65.87 Aligned_cols=87 Identities=21% Similarity=0.186 Sum_probs=65.3
Q ss_pred EEEecCCCCCC-----CC----------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCc-
Q 017128 223 AIVASYDTFGA-----AP----------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYN- 286 (376)
Q Consensus 223 vI~AHyDs~g~-----~~----------~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~- 286 (376)
++.+|+|+++. .+ -+..|++|+-.|+++++.+++.|.+.. ..++++|.|+++..||.|..
T Consensus 1 ll~~H~Dtv~~~~~w~~~pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~~----~~~~~~i~~~~~~~EE~g~~~ 76 (189)
T PF01546_consen 1 LLYAHMDTVPGPEGWKHDPFELSIEDGRLYGRGADDMKGGIAAMLAALKALKESG----DDLPGNIIFLFTPDEEIGSIG 76 (189)
T ss_dssp EEEEES-BCSTGGGSSSSTTSEEEETTEEESTTTTTTHHHHHHHHHHHHHHHHTT----TTCSSEEEEEEESTCCGTSTT
T ss_pred CccccccccCCcCcCCCCCcccEEECCEEEcCCcCCCcccHHHHHHHHHHHHhcc----ccccccccccccccccCCCcc
Confidence 56799999982 11 136799999999999999999998743 45789999999999999998
Q ss_pred chHHHHHhhhHhhhcCeeEEEEeccccC
Q 017128 287 GTHKWLRSFDQRLRESIDYAICLNSVGS 314 (376)
Q Consensus 287 GS~~~ve~~~~~~~~~i~~vInLD~ig~ 314 (376)
|.++++++... ...++.+++..+.-..
T Consensus 77 g~~~l~~~~~~-~~~~~~~~~~~e~~~~ 103 (189)
T PF01546_consen 77 GAKHLLEEGAF-FGLHPDYVIIGEPTGK 103 (189)
T ss_dssp HHHHHHHHCEE-EEEEESEEEECECETT
T ss_pred hhhhhhhhccc-cccccccccccccccc
Confidence 99999987311 1233566666555443
No 44
>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.80 E-value=0.00013 Score=72.73 Aligned_cols=98 Identities=23% Similarity=0.254 Sum_probs=71.7
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-----------------~~~~GAddn~SGva~LLElar~fs~l~ 262 (376)
..|+++++ |.. .|.|++.+|+|+++... -++.|+.|+=+|++++|..++.|.+..
T Consensus 47 ~~n~~~~~-g~~-------~~~i~l~~H~D~Vp~g~~~~w~~~Pf~~~~~~g~iyGrG~~D~Kgg~aa~l~a~~~l~~~~ 118 (375)
T PRK13009 47 VKNLWARR-GTE-------GPHLCFAGHTDVVPPGDLEAWTSPPFEPTIRDGMLYGRGAADMKGSLAAFVVAAERFVAAH 118 (375)
T ss_pred CcEEEEEe-cCC-------CCEEEEEeecccCCCCCcccCCCCCCCcEEECCEEEecCCccChHHHHHHHHHHHHHHHhc
Confidence 46999987 532 57999999999998621 135688899899999999999887653
Q ss_pred CCCCCCCceeEEEEEeCCCCCC-CcchHHHHHhhhHhhhcCeeEEEEec
Q 017128 263 SNPKTRGRYNILFGLTSGGPYN-YNGTHKWLRSFDQRLRESIDYAICLN 310 (376)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g-~~GS~~~ve~~~~~~~~~i~~vInLD 310 (376)
..++++|.|+++.+||.+ ..|++.+++..... ....+++|+.+
T Consensus 119 ----~~~~~~i~~~~~~~EE~~~~~G~~~~~~~~~~~-~~~~d~~i~~e 162 (375)
T PRK13009 119 ----PDHKGSIAFLITSDEEGPAINGTVKVLEWLKAR-GEKIDYCIVGE 162 (375)
T ss_pred ----CCCCceEEEEEEeecccccccCHHHHHHHHHHc-CcCCCEEEEcC
Confidence 346789999999999974 46999998764321 12345555443
No 45
>PRK08262 hypothetical protein; Provisional
Probab=97.80 E-value=0.00013 Score=75.78 Aligned_cols=86 Identities=19% Similarity=0.185 Sum_probs=69.5
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-------------------CCCCCCCCchhHHHHHHHHHHHHHhc
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-------------------ALSVGSDSNGSGVVALLEVARLFSLL 261 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-------------------~~~~GAddn~SGva~LLElar~fs~l 261 (376)
.|+++.++|.++ ..++|++.+|+|+++..+ -++.|+.|+-+|++++|..++.+.+.
T Consensus 98 ~~vv~~~~g~~~-----~~~~ill~gH~DvVp~~~~~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~aa~L~A~~~l~~~ 172 (486)
T PRK08262 98 HSLLYTWKGSDP-----SLKPIVLMAHQDVVPVAPGTEGDWTHPPFSGVIADGYVWGRGALDDKGSLVAILEAAEALLAQ 172 (486)
T ss_pred ccEEEEEECCCC-----CCCeEEEECcccccCCCCCCcccCccCCCceEeeCCEEEecCccccchhHHHHHHHHHHHHHc
Confidence 578888887542 248999999999998631 12569999999999999999999875
Q ss_pred cCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhh
Q 017128 262 YSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (376)
Q Consensus 262 ~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~ 295 (376)
. ..++.+|.|++..+||.|-.|++++++..
T Consensus 173 ~----~~l~~~I~llf~~dEE~g~~G~~~l~~~l 202 (486)
T PRK08262 173 G----FQPRRTIYLAFGHDEEVGGLGARAIAELL 202 (486)
T ss_pred C----CCCCCeEEEEEecccccCCcCHHHHHHHH
Confidence 3 34678999999999998888999999764
No 46
>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE). This model represents a clade of acetylornithine deacetylases from proteobacteria. This enzyme is the final step of the "acetylated" ornithine biosynthesis pathway. The enzyme is closely related to dapE, succinyl-diaminopimelate desuccinylase, and outside of this clade annotation is very inaccurate as to which function should be ascribed to genes.
Probab=97.79 E-value=8.2e-05 Score=73.65 Aligned_cols=83 Identities=13% Similarity=0.065 Sum_probs=68.0
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~-------~---------~~~~GAddn~SGva~LLElar~fs~l~~ 263 (376)
..||++.+.|.+ .|+|++.+|+|+++.. | -++.|+.|+=+|++++|.+++.|.+..
T Consensus 46 ~~nl~~~~~~~~-------~~~i~l~~H~Dtvp~~~~~w~~~Pf~~~~~~~~i~GrG~~D~Kg~~a~~l~a~~~l~~~~- 117 (364)
T TIGR01892 46 KSNLVAVIGPSG-------AGGLALSGHTDVVPYDDAAWTRDPFRLTEKDGRLYGRGTCDMKGFLACALAAAPDLAAEQ- 117 (364)
T ss_pred cccEEEEecCCC-------CCeEEEEcccccccCCCCcCCCCCCcceeeCCEEEecCccccchHHHHHHHHHHHHHhcC-
Confidence 579999986532 4689999999999762 1 245788899999999999999997642
Q ss_pred CCCCCCceeEEEEEeCCCCCCCcchHHHHHhh
Q 017128 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (376)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~ 295 (376)
.+.+|.|++..+||.|..|+++++++.
T Consensus 118 -----~~~~v~~~~~~~EE~g~~G~~~~~~~~ 144 (364)
T TIGR01892 118 -----LKKPLHLALTADEEVGCTGAPKMIEAG 144 (364)
T ss_pred -----cCCCEEEEEEeccccCCcCHHHHHHhc
Confidence 356899999999999999999999875
No 47
>PRK04443 acetyl-lysine deacetylase; Provisional
Probab=97.73 E-value=0.00012 Score=72.57 Aligned_cols=90 Identities=17% Similarity=0.092 Sum_probs=70.9
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-C-------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcee
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-P-------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYN 272 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~-~-------~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~ 272 (376)
.|++|++.| . .|.|++.+|+|+++.. | -++.|+.|+-+|++++|+.++.| .. .++++
T Consensus 49 ~n~i~~~~~-~-------~~~l~~~~H~DtVp~~~p~~~~~g~iyGrG~~D~Kg~~aa~l~A~~~l-~~------~~~~~ 113 (348)
T PRK04443 49 GNARGPAGD-G-------PPLVLLLGHIDTVPGDIPVRVEDGVLWGRGSVDAKGPLAAFAAAAARL-EA------LVRAR 113 (348)
T ss_pred CcEEEEcCC-C-------CCEEEEEeeccccCCCCCcEeeCCeEEeecccccccHHHHHHHHHHHh-cc------cCCCC
Confidence 488888732 1 4799999999999752 2 25789999999999999999988 21 35789
Q ss_pred EEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEec
Q 017128 273 ILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (376)
Q Consensus 273 I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD 310 (376)
|.|+++.+||.|..|..+++.+. . ..+++|+.|
T Consensus 114 i~~~~~~dEE~g~~~~~~~l~~~----~-~~d~~iv~E 146 (348)
T PRK04443 114 VSFVGAVEEEAPSSGGARLVADR----E-RPDAVIIGE 146 (348)
T ss_pred EEEEEEcccccCChhHHHHHHhc----c-CCCEEEEeC
Confidence 99999999999988888888753 1 356777766
No 48
>PRK07079 hypothetical protein; Provisional
Probab=97.73 E-value=0.00019 Score=74.28 Aligned_cols=100 Identities=16% Similarity=0.071 Sum_probs=75.8
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC---------C---------CCCCCCCCchhHHHHHHHHHHHHHhc
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA---------P---------ALSVGSDSNGSGVVALLEVARLFSLL 261 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~---------~---------~~~~GAddn~SGva~LLElar~fs~l 261 (376)
..||++++.|.. +.|.|++.+|+|+++.. | -++.|+.|.=+|++++|...+.+.+.
T Consensus 72 ~~~vva~~~~~~------~~~~lll~gH~DvVp~~~~~W~~~~~Pf~~~~~dg~lyGRGa~DmKgg~aa~l~A~~~l~~~ 145 (469)
T PRK07079 72 GPFLIAERIEDD------ALPTVLIYGHGDVVRGYDEQWREGLSPWTLTEEGDRWYGRGTADNKGQHTINLAALEQVLAA 145 (469)
T ss_pred CCEEEEEeCCCC------CCCEEEEEcccCCCCCChHHhcccCCCCcccccCCEEEEEeccCCcHHHHHHHHHHHHHHHh
Confidence 469999986532 25799999999998741 1 14579999999999999999987643
Q ss_pred cCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEec
Q 017128 262 YSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (376)
Q Consensus 262 ~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD 310 (376)
. +.+++++|.|++...||.|..|++.+++++... -+.+++|+.|
T Consensus 146 ~---~~~~~~~i~~~~~~dEE~g~~G~~~l~~~~~~~--~~~d~~iv~e 189 (469)
T PRK07079 146 R---GGRLGFNVKLLIEMGEEIGSPGLAEVCRQHREA--LAADVLIASD 189 (469)
T ss_pred c---CCCCCCCEEEEEECccccCCccHHHHHHHhHHh--cCCCEEEEeC
Confidence 1 235688999999999999999999999875321 1235666655
No 49
>PRK08652 acetylornithine deacetylase; Provisional
Probab=97.71 E-value=0.00011 Score=72.21 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=64.6
Q ss_pred CCEEEEEecCCCCCCCCC--------CCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHH
Q 017128 219 LPTIAIVASYDTFGAAPA--------LSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHK 290 (376)
Q Consensus 219 ~~~IvI~AHyDs~g~~~~--------~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~ 290 (376)
.|.|++.+|+|+++.... ++.|+.|+-+|++++|++++.|.... ++.+|.|++..+||.|..|++.
T Consensus 55 ~~~i~l~~H~D~vp~~~~~~~~~g~iyGrG~~D~Kg~~a~~l~a~~~l~~~~------~~~~v~~~~~~dEE~g~~G~~~ 128 (347)
T PRK08652 55 KAELFVEVHYDTVPVRAEFFVDGVYVYGTGACDAKGGVAAILLALEELGKEF------EDLNVGIAFVSDEEEGGRGSAL 128 (347)
T ss_pred CCEEEEEccccccCCCCCCEEECCEEEeccchhhhHHHHHHHHHHHHHhhcc------cCCCEEEEEecCcccCChhHHH
Confidence 478999999999986321 56899999999999999999987432 3468999999999998889999
Q ss_pred HHHhhhHhhhcCeeEEEEecc
Q 017128 291 WLRSFDQRLRESIDYAICLNS 311 (376)
Q Consensus 291 ~ve~~~~~~~~~i~~vInLD~ 311 (376)
++++.. .+++|+++-
T Consensus 129 ~~~~~~------~d~~i~~ep 143 (347)
T PRK08652 129 FAERYR------PKMAIVLEP 143 (347)
T ss_pred HHHhcC------CCEEEEecC
Confidence 997642 146666664
No 50
>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.70 E-value=0.00017 Score=71.31 Aligned_cols=94 Identities=16% Similarity=0.186 Sum_probs=70.5
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC----------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCc
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP----------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGR 270 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~----------~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~ 270 (376)
.|+++++.+.. .+.|++.+|+|+++..+ -++.|+.|+-+|+|++|.+++.|.. ++
T Consensus 50 ~~~~~~~~~~~-------~~~i~l~~H~Dtvp~~~~~~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~--------~~ 114 (352)
T PRK13007 50 NSVVARTDLGR-------PSRVVLAGHLDTVPVADNLPSRREGDRLYGCGASDMKSGLAVMLHLAATLAE--------PA 114 (352)
T ss_pred CeEEEEccCCC-------CCeEEEEccccccCCCCCCCcceeCCEEEccCcccccHHHHHHHHHHHHhhc--------cC
Confidence 48999984321 35799999999998631 2568999999999999999999832 46
Q ss_pred eeEEEEEeCCCCCCC--cchHHHHHhhhHhhhcCeeEEEEecc
Q 017128 271 YNILFGLTSGGPYNY--NGTHKWLRSFDQRLRESIDYAICLNS 311 (376)
Q Consensus 271 ~~I~F~~~~gEe~g~--~GS~~~ve~~~~~~~~~i~~vInLD~ 311 (376)
++|.|++...||.+- .|++.++.+... ..+.+++|+.|.
T Consensus 115 ~~i~~~~~~~EE~~~~~~G~~~~~~~~~~--~~~~d~~i~~ep 155 (352)
T PRK13007 115 HDLTLVFYDCEEVEAEANGLGRLAREHPE--WLAGDFAILLEP 155 (352)
T ss_pred CCeEEEEEecccccCCcccHHHHHHhccc--ccCCCEEEEecC
Confidence 789999999999753 588888876421 234567777764
No 51
>PRK07522 acetylornithine deacetylase; Provisional
Probab=97.67 E-value=0.00024 Score=71.10 Aligned_cols=83 Identities=11% Similarity=0.059 Sum_probs=66.7
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~-------~---------~~~~GAddn~SGva~LLElar~fs~l~~ 263 (376)
..||++++.|.. .|.|++.+|+|+++.. | -++.|+.|+=.|++++|.+++.|.+.
T Consensus 52 ~~nv~a~~~~~~-------~~~ill~~H~Dtv~~~~~~W~~~pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~-- 122 (385)
T PRK07522 52 KANLFATIGPAD-------RGGIVLSGHTDVVPVDGQAWTSDPFRLTERDGRLYGRGTCDMKGFIAAALAAVPELAAA-- 122 (385)
T ss_pred cccEEEEeCCCC-------CCeEEEEeecccccCCCCCCCCCCCceEEECCEEEeccccccchHHHHHHHHHHHHHhC--
Confidence 469999985431 4789999999998752 1 24568888888999999999999764
Q ss_pred CCCCCCceeEEEEEeCCCCCCCcchHHHHHhh
Q 017128 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (376)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~ 295 (376)
.++++|.|++...||.|..|+++++++.
T Consensus 123 ----~~~~~i~~~~~~dEE~g~~G~~~l~~~~ 150 (385)
T PRK07522 123 ----PLRRPLHLAFSYDEEVGCLGVPSMIARL 150 (385)
T ss_pred ----CCCCCEEEEEEeccccCCccHHHHHHHh
Confidence 1357899999999998889999999864
No 52
>PRK06837 acetylornithine deacetylase; Provisional
Probab=97.65 E-value=0.00023 Score=72.74 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=68.7
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC---C--------------CCCCCCCchhHHHHHHHHHHHHHhc
Q 017128 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP---A--------------LSVGSDSNGSGVVALLEVARLFSLL 261 (376)
Q Consensus 199 ~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~---~--------------~~~GAddn~SGva~LLElar~fs~l 261 (376)
...||++.++|..+ ..|.|++.+|+|+++..+ | ++.|+.|+-.|++++|..++.|.+.
T Consensus 82 ~~~nl~a~~~g~~~-----~~~~il~~gH~DvVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kgg~~a~l~a~~~l~~~ 156 (427)
T PRK06837 82 GAPNVVGTYRPAGK-----TGRSLILQGHIDVVPEGPLDLWSRPPFDPVIVDGWMYGRGAADMKAGLAAMLFALDALRAA 156 (427)
T ss_pred CCceEEEEecCCCC-----CCCeEEEEeecccCCCCCccccccCCCCcEEECCEEEecCcccchHHHHHHHHHHHHHHHc
Confidence 36899999988542 258999999999998631 1 2459999999999999999998765
Q ss_pred cCCCCCCCceeEEEEEeCCCCCCCcchHHHHHh
Q 017128 262 YSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRS 294 (376)
Q Consensus 262 ~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~ 294 (376)
. ..++++|.|+++..||.+-.|+...+..
T Consensus 157 ~----~~~~~~i~~~~~~dEE~~g~g~~~~~~~ 185 (427)
T PRK06837 157 G----LAPAARVHFQSVIEEESTGNGALSTLQR 185 (427)
T ss_pred C----CCCCCcEEEEEEeccccCCHhHHHHHhc
Confidence 3 3567899999999999877788776653
No 53
>PRK05111 acetylornithine deacetylase; Provisional
Probab=97.60 E-value=0.00023 Score=71.19 Aligned_cols=82 Identities=16% Similarity=0.136 Sum_probs=65.1
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~-------~---------~~~~GAddn~SGva~LLElar~fs~l~~ 263 (376)
-.|+++++ |.. .+.|++.+|+|+++.. | -++.|+.|+=.|++++|+..+.|.+.
T Consensus 60 ~~nvia~~-g~~-------~~~il~~~H~Dvvp~~~~~W~~~Pf~~~~~~g~i~GrG~~D~Kg~~a~~l~a~~~l~~~-- 129 (383)
T PRK05111 60 KFNLLASL-GSG-------EGGLLLAGHTDTVPFDEGRWTRDPFTLTEHDGKLYGLGTADMKGFFAFILEALRDIDLT-- 129 (383)
T ss_pred CceEEEEe-CCC-------CCeEEEEeeeceecCCCCcCcCCCCccEEECCEEEecccccccHHHHHHHHHHHHHhhc--
Confidence 46999998 532 3479999999999752 1 14678888888999999999998753
Q ss_pred CCCCCCceeEEEEEeCCCCCCCcchHHHHHhh
Q 017128 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (376)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~ 295 (376)
..+.+|.|++..+||.|..|+++++++.
T Consensus 130 ----~~~~~i~~~~~~~EE~g~~G~~~~~~~~ 157 (383)
T PRK05111 130 ----KLKKPLYILATADEETSMAGARAFAEAT 157 (383)
T ss_pred ----CCCCCeEEEEEeccccCcccHHHHHhcC
Confidence 1356899999999999989999999863
No 54
>PRK13004 peptidase; Reviewed
Probab=97.56 E-value=0.00049 Score=69.63 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=69.9
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-----------------~~~~GAddn~SGva~LLElar~fs~l~~ 263 (376)
.|+++++.|. .|+|++.+|+|+++..+ -++.|+.|+-+|++++|..++.|.+..
T Consensus 59 ~n~~a~~~~~--------~~~i~~~~H~DtVp~~~~~~w~~~P~~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~- 129 (399)
T PRK13004 59 GNVLGYIGHG--------KKLIAFDAHIDTVGIGDIKNWDFDPFEGEEDDGRIYGRGTSDQKGGMASMVYAAKIIKDLG- 129 (399)
T ss_pred CeEEEEECCC--------CcEEEEEeccCccCCCChhhcccCCCccEEECCEEEeCCccccchHHHHHHHHHHHHHhcC-
Confidence 4899988551 37899999999998521 135688888899999999999998753
Q ss_pred CCCCCCceeEEEEEeCCCCC-CCcchHHHHHhhhHhhhcCeeEEEEecc
Q 017128 264 NPKTRGRYNILFGLTSGGPY-NYNGTHKWLRSFDQRLRESIDYAICLNS 311 (376)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~-g~~GS~~~ve~~~~~~~~~i~~vInLD~ 311 (376)
..++.+|.|+++.+||. +-.|+++++++.. -+.+++|+.+.
T Consensus 130 ---~~~~~~i~~~~~~~EE~~~g~~~~~~~~~~~----~~~d~~i~~e~ 171 (399)
T PRK13004 130 ---LDDEYTLYVTGTVQEEDCDGLCWRYIIEEDK----IKPDFVVITEP 171 (399)
T ss_pred ---CCCCCeEEEEEEcccccCcchhHHHHHHhcC----CCCCEEEEccC
Confidence 34678999999999994 4568888887521 12345555553
No 55
>PRK06446 hypothetical protein; Provisional
Probab=97.55 E-value=0.00028 Score=72.42 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=67.7
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhcc
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLY 262 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~--------~---------~~~~GAddn~SGva~LLElar~fs~l~ 262 (376)
-.|+++++++ . ..|+|++.+|+|+++.. | -++.|+.|+=+|++++|...+.+.+..
T Consensus 50 ~~~lia~~~~-~------~~~~vll~gH~DvVp~~~~~~W~~~Pf~~~~~dg~lyGRGa~DmKgglaa~l~A~~~l~~~~ 122 (436)
T PRK06446 50 HPVVYGEINV-G------AKKTLLIYNHYDVQPVDPLSEWKRDPFSATIENGRIYARGASDNKGTLMARLFAIKHLIDKH 122 (436)
T ss_pred CCEEEEEecC-C------CCCEEEEEecccCCCCCccccccCCCCceEEECCEEEEEeccCCcHHHHHHHHHHHHHHHcC
Confidence 4689999853 2 25799999999997742 1 246799999999999999998776532
Q ss_pred CCCCCCCceeEEEEEeCCCCCCCcchHHHHHhh
Q 017128 263 SNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (376)
Q Consensus 263 ~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~ 295 (376)
.++.+|.|++...||.|-.|+++|++++
T Consensus 123 -----~~~~~i~~~~~~dEE~g~~g~~~~l~~~ 150 (436)
T PRK06446 123 -----KLNVNVKFLYEGEEEIGSPNLEDFIEKN 150 (436)
T ss_pred -----CCCCCEEEEEEcccccCCHhHHHHHHHH
Confidence 3567999999999999999999999874
No 56
>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase. This clade of mainly archaeal and related bacterial species contains two characterized enzymes, an deacetylase with specificity for both N-acetyl-ornithine and N-acetyl-lysine from Thermus which is found within a lysine biosynthesis operon, and a fusion protein with acetyl-glutamate kinase (an enzyme of ornithine biosynthesis) from Lactobacillus. It is possible that all of the sequences within this clade have dual specificity, or that a mix of specificities have evolved within this clade.
Probab=97.53 E-value=0.00032 Score=69.13 Aligned_cols=91 Identities=13% Similarity=0.058 Sum_probs=69.3
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------CCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCcee
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------PALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYN 272 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~--------~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~ 272 (376)
.|+++.. |. ..|.|++.+|+|+++.. .-++.|+.|.-+|++++|+..+.|.+. ..+
T Consensus 40 ~~~~~~~-~~-------~~~~i~~~~H~D~vp~~~~~~~~~g~i~GrG~~D~Kg~~aa~l~a~~~l~~~--------~~~ 103 (336)
T TIGR01902 40 GNFILGK-GD-------GHKKILLAGHVDTVPGYIPVKIEGGLLYGRGAVDAKGPLIAMIFATWLLNEK--------GIK 103 (336)
T ss_pred CcEEEEe-CC-------CCceEEEEccccccCCCcccEEeCCEEEEecccCCCcHHHHHHHHHHHHHhC--------CCc
Confidence 3777654 31 25899999999999642 124679999999999999999998653 358
Q ss_pred EEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEecccc
Q 017128 273 ILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVG 313 (376)
Q Consensus 273 I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig 313 (376)
|+|+++..||.|..|++.++++.. . .++|+.|--+
T Consensus 104 i~~~~~~dEE~g~~G~~~~~~~~~----~--~~~ii~ept~ 138 (336)
T TIGR01902 104 VIVSGLVDEESSSKGAREVIDKNY----P--FYVIVGEPSG 138 (336)
T ss_pred EEEEEEeCcccCCccHHHHHhhcC----C--CEEEEecCCC
Confidence 999999999999999999998742 1 2666666543
No 57
>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=97.53 E-value=0.00047 Score=69.27 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=70.4
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-C---------------CCCCCCCchhHHHHHHHHHHHHHhccC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-A---------------LSVGSDSNGSGVVALLEVARLFSLLYS 263 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-~---------------~~~GAddn~SGva~LLElar~fs~l~~ 263 (376)
..|+++.. |. ..|+|++.+|+|+++... + ++.|+.|+-.|++++|++++.+.+.
T Consensus 63 ~~~~~~~~-~~-------~~~~ill~~HlDtvp~~~~~~~~~Pf~~~~~~~~~~grG~~D~k~~~~~~l~a~~~l~~~-- 132 (394)
T PRK08651 63 RPNLIARR-GS-------GNPHLHFNGHYDVVPPGEGWSVNVPFEPKVKDGKVYGRGASDMKGGIAALLAAFERLDPA-- 132 (394)
T ss_pred cceEEEEe-CC-------CCceEEEEeeeeeecCCCCccccCCCCcEEECCEEEecCccccchHHHHHHHHHHHHHhc--
Confidence 45788764 32 148999999999998631 1 3468888899999999999988653
Q ss_pred CCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEecccc
Q 017128 264 NPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVG 313 (376)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig 313 (376)
+ +++|.|++..+||.|..|+++++++... +.+++|+.|-.+
T Consensus 133 --~---~~~v~~~~~~~EE~g~~G~~~~~~~~~~----~~d~~i~~~~~~ 173 (394)
T PRK08651 133 --G---DGNIELAIVPDEETGGTGTGYLVEEGKV----TPDYVIVGEPSG 173 (394)
T ss_pred --C---CCCEEEEEecCccccchhHHHHHhccCC----CCCEEEEecCCC
Confidence 1 6799999999999888999999986421 234555555433
No 58
>PRK06156 hypothetical protein; Provisional
Probab=97.52 E-value=0.00055 Score=72.06 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=65.9
Q ss_pred CCEEEEEecCCCCCCC------------C---------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEE
Q 017128 219 LPTIAIVASYDTFGAA------------P---------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGL 277 (376)
Q Consensus 219 ~~~IvI~AHyDs~g~~------------~---------~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~ 277 (376)
.|.|++.+|+|+++.. | -++.|+.|+=.|++++|...+.|.+.. .+++++|.|++
T Consensus 109 ~~~l~l~gH~DvVp~~~~~W~~~~~~~~Pf~~~~~~g~lyGRG~~D~Kgg~a~~l~a~~~l~~~~----~~~~~~i~~~~ 184 (520)
T PRK06156 109 SDKVGILTHADVVPANPELWVLDGTRLDPFKVTLVGDRLYGRGTEDDKGAIVTALYAMKAIKDSG----LPLARRIELLV 184 (520)
T ss_pred CCeEEEEEecCccCCCCccCccCCccCCCCceEEECCEEEEcCcccchHHHHHHHHHHHHHHHcC----CCCCceEEEEE
Confidence 4789999999999852 1 135688899999999999999887642 34578999999
Q ss_pred eCCCCCCCcchHHHHHhhhHhhhcCeeEEEEecc
Q 017128 278 TSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (376)
Q Consensus 278 ~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ 311 (376)
+..||.|..|+++|+++.. ...+++|+|.
T Consensus 185 ~~dEE~g~~G~~~~~~~~~-----~~~~~~~~D~ 213 (520)
T PRK06156 185 YTTEETDGDPLKYYLERYT-----PPDYNITLDA 213 (520)
T ss_pred ecccccCchhHHHHHHhcC-----CCCeEEeeCC
Confidence 9999999999999998642 2345666664
No 59
>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase. This enzyme is involved in the biosynthesis of lysine, and is related to the enzyme acetylornithine deacetylase and other amidases and peptidases found within pfam01546.
Probab=97.50 E-value=0.00052 Score=69.02 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=70.7
Q ss_pred eEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC---------------------C------CCCCCCCCchhHHHHHHHH
Q 017128 202 NIQGWLQGLKADGDANQLPTIAIVASYDTFGAA---------------------P------ALSVGSDSNGSGVVALLEV 254 (376)
Q Consensus 202 NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~---------------------~------~~~~GAddn~SGva~LLEl 254 (376)
||++++.+. +.++|++.+|+|+++.. + -++.|+.|.-+|++++|..
T Consensus 42 nvva~~~~~-------~~~~l~l~gH~DtVp~~~~~~~~W~~~p~~~~~~~~~~~~~~~g~lyGRGa~DmKgg~aa~l~a 114 (373)
T TIGR01900 42 NVLARTDFG-------KASRVILAGHIDTVPIADNFPPKWLEPGDSLIREEIAHAHPEDGILWGCGATDMKAGDAVMLHL 114 (373)
T ss_pred EEEEecCCC-------CCCeEEEeCccccccCCCCChhhhccCcccccccccccccccCCEEEecCchhhhHHHHHHHHH
Confidence 899997531 24689999999999652 0 1356888999999999999
Q ss_pred HHHHHhccCCCCCCCceeEEEEEeCCCCCC--CcchHHHHHhhhHhhhcCeeEEEEec
Q 017128 255 ARLFSLLYSNPKTRGRYNILFGLTSGGPYN--YNGTHKWLRSFDQRLRESIDYAICLN 310 (376)
Q Consensus 255 ar~fs~l~~~~~~~p~~~I~F~~~~gEe~g--~~GS~~~ve~~~~~~~~~i~~vInLD 310 (376)
++.|..... +..++.+|.|++...||.+ ..|++.+++.... ..+.+++|+.+
T Consensus 115 ~~~l~~~~~--~~~~~~~i~~~~~~dEE~~~~~~G~~~~~~~~~~--~~~~d~~iv~E 168 (373)
T TIGR01900 115 AATLDGRAP--ETELKHDLTLIAYDCEEVAAEKNGLGHIRDAHPD--WLAADFAIIGE 168 (373)
T ss_pred HHHHhhhcc--ccCCCCCEEEEEEecccccCCCCCHHHHHHhCcc--cccCCEEEEEC
Confidence 999854321 1245789999999999975 3699999986421 12345666654
No 60
>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]
Probab=97.47 E-value=0.00066 Score=68.75 Aligned_cols=103 Identities=17% Similarity=0.125 Sum_probs=82.2
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------------CCCCCCCCchhHHHHHHHHHHHHHhc
Q 017128 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------------ALSVGSDSNGSGVVALLEVARLFSLL 261 (376)
Q Consensus 199 ~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-----------------~~~~GAddn~SGva~LLElar~fs~l 261 (376)
...|+++++.|... .|.|++.+|+|+++..+ -+..|+.|.=.++++.+..++.|...
T Consensus 61 ~~~n~~~~~~~~~~------~~~l~l~~H~DvVP~g~~~~W~~~Pf~~~~~dg~lyGRG~~D~KG~~~a~l~A~~~l~~~ 134 (409)
T COG0624 61 GRPNLVARLGGGDG------GPTLLLGGHLDVVPAGGGEDWTTDPFEPTIKDGKLYGRGAADMKGGLAAALYALSALKAA 134 (409)
T ss_pred CceEEEEEecCCCC------CCeEEEeccccccCCCCcccCccCCCccEEECCEEEecCccccchHHHHHHHHHHHHHHh
Confidence 34599999988652 38999999999999842 24678999999999999999999875
Q ss_pred cCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEecc
Q 017128 262 YSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNS 311 (376)
Q Consensus 262 ~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ 311 (376)
. ..++.+|.|++...||.+-.|.++|+++.......+.+++|..|.
T Consensus 135 ~----~~~~~~v~~~~~~dEE~g~~~~~~~~~~~~~~~~~~~d~~i~~E~ 180 (409)
T COG0624 135 G----GELPGDVRLLFTADEESGGAGGKAYLEEGEEALGIRPDYEIVGEP 180 (409)
T ss_pred C----CCCCeEEEEEEEeccccCCcchHHHHHhcchhhccCCCEEEeCCC
Confidence 3 346799999999999999999999999865432345566777776
No 61
>PF04114 Gaa1: Gaa1-like, GPI transamidase component ; InterPro: IPR007246 GPI (glycosyl phosphatidyl inositol) transamidase is a multiprotein complex required for a terminal step of adding the glycosylphosphatidylinositol (GPI) anchor attachment onto proteins. Gpi16, Gpi8 and Gaa1 form a sub-complex of the GPI transamidase.; GO: 0016021 integral to membrane, 0042765 GPI-anchor transamidase complex
Probab=97.42 E-value=0.0018 Score=68.17 Aligned_cols=132 Identities=22% Similarity=0.304 Sum_probs=88.8
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEe
Q 017128 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLT 278 (376)
Q Consensus 199 ~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~ 278 (376)
.+.||+|.++.-.. ...+-||+++.|++.. | +-|..|++.+|.++|.|++.. -| .++|+|+++
T Consensus 2 ~G~nvy~i~rapR~----d~tEaivl~~~~~~~~-------~-~~n~~~v~l~lal~~~~~~~~---~w--sKDii~l~~ 64 (504)
T PF04114_consen 2 SGTNVYGILRAPRG----DGTEAIVLVVPWRDSD-------G-EYNAGGVALALALARYFRRQS---YW--SKDIIFLFT 64 (504)
T ss_pred CceEEEEEEecCCC----CCceeEEEEEecCCCC-------c-ccchhhHHHHHHHHHHhhhch---hh--hccEEEEec
Confidence 36899999986542 2478999999998652 2 567889999999999999763 13 789999998
Q ss_pred CCCCCCCcchHHHHHhhhHh---------h---hcCeeEEEEeccccCCCCceEEEecCCCCchHHHHHHHHHHHHhhhc
Q 017128 279 SGGPYNYNGTHKWLRSFDQR---------L---RESIDYAICLNSVGSWNNELWIHVSKPPENAYIKQIFEGFTNVAEEL 346 (376)
Q Consensus 279 ~gEe~g~~GS~~~ve~~~~~---------~---~~~i~~vInLD~ig~~~~~L~lh~s~~p~~~~~~~l~~~l~~~a~~~ 346 (376)
+.+ ..|.+.|++++-.. + --.|.+.|++|--+...+.+.+.....--.-...++++...+.+.+.
T Consensus 65 ~~~---~~g~~awl~~Yh~~~~~~~~~~~l~~~~G~i~aAl~le~~~~~~~~v~i~~eG~NGqLPNLDL~N~~~~i~~~~ 141 (504)
T PF04114_consen 65 DDE---LAGMQAWLEAYHDSNTKGLSSSPLPLRAGSIQAALVLEYPSDSFSSVEIKYEGLNGQLPNLDLVNTVVRIAEKE 141 (504)
T ss_pred CCc---chHHHHHHHHHhCCCCccccccCCCCCCcceeEEEEEEecCCCccEEEEEEecCCCCCCCchHHHHHHHHHHhc
Confidence 854 58999999975211 1 12588899999877543444333321110011234666666666666
Q ss_pred Ccee
Q 017128 347 GFKV 350 (376)
Q Consensus 347 ~i~~ 350 (376)
|+..
T Consensus 142 gi~~ 145 (504)
T PF04114_consen 142 GIPM 145 (504)
T ss_pred CCCc
Confidence 6444
No 62
>PRK08554 peptidase; Reviewed
Probab=97.41 E-value=0.00091 Score=69.01 Aligned_cols=98 Identities=16% Similarity=0.238 Sum_probs=72.9
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC----------------CCCCCCCCchhHHHHHHHHHHHHHhccCC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP----------------ALSVGSDSNGSGVVALLEVARLFSLLYSN 264 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~----------------~~~~GAddn~SGva~LLElar~fs~l~~~ 264 (376)
.|+++.+ |. ..+.|++.+|+|+++..+ -++.|+.|+-+|++++|..++.|.+.
T Consensus 53 ~~l~~~~-~~-------~~~~l~l~gH~DtVp~~~~~w~~~Pf~~~~~~g~lyGrG~~DmKgg~aa~l~A~~~l~~~--- 121 (438)
T PRK08554 53 YAVYGEI-GE-------GKPKLLFMAHFDVVPVNPEEWNTEPFKLTVKGDKAYGRGSADDKGNVASVMLALKELSKE--- 121 (438)
T ss_pred eEEEEEe-CC-------CCCEEEEEeccccCCCCccccccCCceeEEECCEEEECCcccchHHHHHHHHHHHHHHhc---
Confidence 6888886 32 146899999999987631 24689999999999999999998753
Q ss_pred CCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEecccc
Q 017128 265 PKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVG 313 (376)
Q Consensus 265 ~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig 313 (376)
.++++|.|+++..||.|-.|++++++.+... ....+++|+.|..+
T Consensus 122 ---~~~~~i~l~~~~dEE~g~~~~~~~~~~~~~~-~~~~~~~iv~Ept~ 166 (438)
T PRK08554 122 ---PLNGKVIFAFTGDEEIGGAMAMHIAEKLREE-GKLPKYMINADGIG 166 (438)
T ss_pred ---CCCCCEEEEEEcccccCccccHHHHHHHHhc-CCCCCEEEEeCCCC
Confidence 2467899999999998877777776654211 13456778887643
No 63
>PLN02280 IAA-amino acid hydrolase
Probab=97.39 E-value=0.001 Score=69.57 Aligned_cols=93 Identities=14% Similarity=0.211 Sum_probs=68.1
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTR 268 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-----------~~~~GAddn~SGva~LLElar~fs~l~~~~~~~ 268 (376)
..|+++++ |.. ..|+|++.+|+|+++... +.-+|.+.++ +++++|.++++|.+.. ..
T Consensus 140 ~~~vva~~-g~~------~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~-~~A~~l~a~~~L~~~~----~~ 207 (478)
T PLN02280 140 KTGIRAWI-GTG------GPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDA-HVAMLLGAAKILKSRE----HL 207 (478)
T ss_pred CCEEEEEE-CCC------CCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcH-HHHHHHHHHHHHHhcc----cc
Confidence 46999998 543 148999999999998631 1234556666 9999999999998653 23
Q ss_pred CceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEE
Q 017128 269 GRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAIC 308 (376)
Q Consensus 269 p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vIn 308 (376)
++.+|.|++..+||.|. |+++++++-. .++++++++
T Consensus 208 ~~g~V~~if~pdEE~g~-Ga~~li~~g~---~~~~d~~~~ 243 (478)
T PLN02280 208 LKGTVVLLFQPAEEAGN-GAKRMIGDGA---LDDVEAIFA 243 (478)
T ss_pred CCceEEEEecccccccc-hHHHHHHCCC---CcCCCEEEE
Confidence 46799999999999874 9999998631 233445554
No 64
>TIGR01886 dipeptidase dipeptidase PepV. This model represents a small clade of dipeptidase enzymes which are members of the larger M25 subfamily of metalloproteases. Two characterized enzymes are included in the seed. One, from Lactococcus lactis has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterized as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an E. coli mutant. Further study, including the crystallization of the enzyme, has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus.
Probab=97.36 E-value=0.00049 Score=71.47 Aligned_cols=73 Identities=12% Similarity=0.159 Sum_probs=61.9
Q ss_pred CCEEEEEecCCCCCCC------C---------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCC
Q 017128 219 LPTIAIVASYDTFGAA------P---------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPY 283 (376)
Q Consensus 219 ~~~IvI~AHyDs~g~~------~---------~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~ 283 (376)
.|+|++.+|+|+++.. | -++.|+.|+-.|+++.|..++.|.+.. ..++++|.|++...||.
T Consensus 78 ~~~l~~~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~D~Kg~~~a~l~a~~~l~~~~----~~~~~~i~~~~~~dEE~ 153 (466)
T TIGR01886 78 DERLGIIGHMDVVPAGEGWTRDPFEPEIDEGRIYARGASDDKGPSLAAYYAMKILKELG----LPPSKKIRFVVGTNEET 153 (466)
T ss_pred CCEEEEEeecccCCCCCCCcCCCCCeEEECCEEEecCccccchHHHHHHHHHHHHHHhC----CCCCCCEEEEEECcccc
Confidence 5799999999999752 1 246899999999999999999997653 35688999999999999
Q ss_pred CCcchHHHHHhh
Q 017128 284 NYNGTHKWLRSF 295 (376)
Q Consensus 284 g~~GS~~~ve~~ 295 (376)
|..|+++|+++.
T Consensus 154 g~~g~~~~~~~~ 165 (466)
T TIGR01886 154 GWVDMDYYFKHE 165 (466)
T ss_pred CcccHHHHHhcC
Confidence 999999999864
No 65
>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade. This model describes a proteobacterial subset of succinyl-diaminopimelate desuccinylases. An experimentally confirmed Gram-positive lineage succinyl-diaminopimelate desuccinylase has been described for Corynebacterium glutamicum, and a neighbor-joining tree shows the seed members, SP:Q59284, and putative archaeal members such as TrEMBL:O58003 in a single clade. However, the archaeal members differ substantially, share a number of motifs with acetylornithine deacetylases rather than succinyl-diaminopimelate desuccinylases, and are not taken as trusted examples of succinyl-diaminopimelate desuccinylases. This model is limited to proteobacterial members for this reason.
Probab=97.36 E-value=0.0011 Score=66.03 Aligned_cols=97 Identities=24% Similarity=0.260 Sum_probs=68.4
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-----------------~~~~GAddn~SGva~LLElar~fs~l~~ 263 (376)
.|++++. |.. .|+|++.+|+|+++..+ -++.|+.|.=.|+++++..++.+.+..
T Consensus 45 ~~~~~~~-g~~-------~~~i~~~~H~DtVp~~~~~~W~~~p~~~~~~dg~~yGrG~~D~Kgg~a~~l~a~~~l~~~~- 115 (370)
T TIGR01246 45 KNLWATR-GTG-------EPVLAFAGHTDVVPAGPEEQWSSPPFEPVERDGKLYGRGAADMKGSLAAFIVAAERFVKKN- 115 (370)
T ss_pred ceEEEEe-cCC-------CcEEEEEccccccCCCCccccccCCCCcEEECCEEEecccccchHHHHHHHHHHHHHHHhc-
Confidence 5899875 322 57999999999998631 235677788889999998888776643
Q ss_pred CCCCCCceeEEEEEeCCCCCC-CcchHHHHHhhhHhhhcCeeEEEEec
Q 017128 264 NPKTRGRYNILFGLTSGGPYN-YNGTHKWLRSFDQRLRESIDYAICLN 310 (376)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g-~~GS~~~ve~~~~~~~~~i~~vInLD 310 (376)
..++.+|.|++..+||.+ ..|++.+++.+... ....+++|+.+
T Consensus 116 ---~~~~~~v~~~~~~dEE~~~~~G~~~~~~~~~~~-~~~~d~~i~~e 159 (370)
T TIGR01246 116 ---PDHKGSISLLITSDEEGTAIDGTKKVVETLMAR-DELIDYCIVGE 159 (370)
T ss_pred ---CCCCCcEEEEEEeccccCCCcCHHHHHHHHHhc-CCCCCEEEEcC
Confidence 235679999999999975 47999998753221 12345555433
No 66
>PLN02693 IAA-amino acid hydrolase
Probab=97.35 E-value=0.0012 Score=68.23 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=62.2
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-----------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-----------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTR 268 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-----------~~~~GAddn~SGva~LLElar~fs~l~~~~~~~ 268 (376)
..||+|.+ |.. +.|.|++.+|+|+++... +..+|.+.+| +++++|.+++.|.+... .
T Consensus 90 ~~~via~~-g~~------~g~~i~l~~h~DaVp~~e~~~~~~~p~~~G~~hacGhkg-~~A~~l~Aa~~L~~~~~----~ 157 (437)
T PLN02693 90 ITGIIGYI-GTG------EPPFVALRADMDALPIQEAVEWEHKSKIPGKMHACGHDG-HVAMLLGAAKILQEHRH----H 157 (437)
T ss_pred CcEEEEEE-CCC------CCCEEEEEeecCCCcCCCCCCCCCCCCCCCCEECCcchH-HHHHHHHHHHHHHhCcc----c
Confidence 47999998 322 258999999999998631 1223445554 79999999999987642 2
Q ss_pred CceeEEEEEeCCCCCCCcchHHHHHhh
Q 017128 269 GRYNILFGLTSGGPYNYNGTHKWLRSF 295 (376)
Q Consensus 269 p~~~I~F~~~~gEe~g~~GS~~~ve~~ 295 (376)
.+.+|.|++..+|| +..|++.++++.
T Consensus 158 ~~g~V~~if~pdEE-~~~Ga~~~i~~g 183 (437)
T PLN02693 158 LQGTVVLIFQPAEE-GLSGAKKMREEG 183 (437)
T ss_pred CCceEEEEEEEccc-chhhHHHHHHCC
Confidence 35689999999999 557999999863
No 67
>PRK15026 aminoacyl-histidine dipeptidase; Provisional
Probab=97.31 E-value=0.00095 Score=69.88 Aligned_cols=96 Identities=17% Similarity=0.076 Sum_probs=69.3
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC--------------------CCCCCC---CCchhHHHHHHHHHHH
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP--------------------ALSVGS---DSNGSGVVALLEVARL 257 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~--------------------~~~~GA---ddn~SGva~LLElar~ 257 (376)
.|++++.+++... +..|.|++.+|+|+++... -++.|+ .|++.|++++|.+.+
T Consensus 53 gnvi~~~~~~~g~---~~~~~v~l~gH~DtV~~~~~~~~~~w~~~P~~~~i~~~~l~g~Gt~lgaD~k~gva~~l~~l~- 128 (485)
T PRK15026 53 GNILIRKPATAGM---ENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLA- 128 (485)
T ss_pred CeEEEEEcCCCCC---CCCCEEEEEeeecccCCCCCCccccCCCCCceEEEcCCEEEeCCccccCccHHHHHHHHHHHH-
Confidence 5899988764311 2368899999999997521 124677 499999999887652
Q ss_pred HHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccc
Q 017128 258 FSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSV 312 (376)
Q Consensus 258 fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~i 312 (376)
+. + .+..+|.|+++..||.|..|++++.... .+.+++||+|.-
T Consensus 129 --~~----~-~~~~~i~~l~t~dEE~G~~ga~~l~~~~-----~~~~~~i~~e~~ 171 (485)
T PRK15026 129 --DE----N-VVHGPLEVLLTMTEEAGMDGAFGLQSNW-----LQADILINTDSE 171 (485)
T ss_pred --hC----C-CCCCCEEEEEEcccccCcHhHHHhhhcc-----CCcCEEEEeCCC
Confidence 21 1 2356899999999999999999985432 245788888775
No 68
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=97.29 E-value=0.00072 Score=67.00 Aligned_cols=80 Identities=10% Similarity=0.061 Sum_probs=62.4
Q ss_pred CEEEEEecCCCCCC-CC-------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHH
Q 017128 220 PTIAIVASYDTFGA-AP-------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKW 291 (376)
Q Consensus 220 ~~IvI~AHyDs~g~-~~-------~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ 291 (376)
+.|++.+|+|+++. ++ -++.|+.|+=.|++++|..++.|.+. ..++.|+++.+||.|..|++++
T Consensus 61 ~~lll~gH~DtVp~~~~~~~~~g~iyGrG~~DmKgg~aa~l~a~~~l~~~--------~~~i~~~~~~dEE~g~~G~~~l 132 (346)
T PRK00466 61 GDILLASHVDTVPGYIEPKIEGEVIYGRGAVDAKGPLISMIIAAWLLNEK--------GIKVMVSGLADEESTSIGAKEL 132 (346)
T ss_pred CeEEEEeccccCCCCCCceeeCCEEEecCccccchHHHHHHHHHHHHHHc--------CCCEEEEEEcCcccCCccHHHH
Confidence 46999999999975 11 24689999999999999999988664 1358999999999998999999
Q ss_pred HHhhhHhhhcCeeEEEEeccc
Q 017128 292 LRSFDQRLRESIDYAICLNSV 312 (376)
Q Consensus 292 ve~~~~~~~~~i~~vInLD~i 312 (376)
+++.. +.+++|+.+-.
T Consensus 133 ~~~~~-----~~d~~i~~ep~ 148 (346)
T PRK00466 133 VSKGF-----NFKHIIVGEPS 148 (346)
T ss_pred HhcCC-----CCCEEEEcCCC
Confidence 98631 24566665543
No 69
>PRK07205 hypothetical protein; Provisional
Probab=97.25 E-value=0.0012 Score=67.76 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=61.4
Q ss_pred CCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCC
Q 017128 219 LPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGG 281 (376)
Q Consensus 219 ~~~IvI~AHyDs~g~~--------~---------~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gE 281 (376)
.|.|++.+|+|+++.. | -++.|+.|+=.|++++|...+.|.+.. ..++++|.|++...|
T Consensus 75 ~~~lll~gH~DvVp~~~~~~W~~~Pf~~~v~dg~lyGRGa~DmKgglaa~l~Al~~l~~~~----~~~~~~i~l~~~~dE 150 (444)
T PRK07205 75 EELLAILCHLDVVPEGDLSDWQTPPFEAVEKDGCLFGRGTQDDKGPSMAALYAVKALLDAG----VQFNKRIRFIFGTDE 150 (444)
T ss_pred CcEEEEEEeeccCCCCCcccCCCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcC----CCCCCcEEEEEECCc
Confidence 4789999999999762 1 246799999999999999999998753 356789999999999
Q ss_pred CCCCcchHHHHHh
Q 017128 282 PYNYNGTHKWLRS 294 (376)
Q Consensus 282 e~g~~GS~~~ve~ 294 (376)
|.|..|+++|++.
T Consensus 151 E~g~~g~~~~~~~ 163 (444)
T PRK07205 151 ETLWRCMNRYNEV 163 (444)
T ss_pred ccCcccHHHHHhC
Confidence 9999999999974
No 70
>PRK07318 dipeptidase PepV; Reviewed
Probab=97.22 E-value=0.00096 Score=69.12 Aligned_cols=84 Identities=12% Similarity=0.132 Sum_probs=66.6
Q ss_pred eEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC------C---------CCCCCCCCchhHHHHHHHHHHHHHhccCCCC
Q 017128 202 NIQGWLQGLKADGDANQLPTIAIVASYDTFGAA------P---------ALSVGSDSNGSGVVALLEVARLFSLLYSNPK 266 (376)
Q Consensus 202 NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~------~---------~~~~GAddn~SGva~LLElar~fs~l~~~~~ 266 (376)
|+++++++.. ..+.|++.+|+|+++.. | -++.|+.|.-+|+++++...+.|.+..
T Consensus 68 n~~~~~~~~~------~~~~l~l~gH~DvVp~~~~W~~~Pf~~~~~dg~lyGRG~~DmKgg~aa~l~Al~~l~~~g---- 137 (466)
T PRK07318 68 NYAGHIEYGE------GEEVLGILGHLDVVPAGDGWDTDPYEPVIKDGKIYARGTSDDKGPTMAAYYALKIIKELG---- 137 (466)
T ss_pred CccceEEECC------CCCEEEEEEecCCCCCCCCCCCCCcceEEECCEEEEcccccCcHHHHHHHHHHHHHHHcC----
Confidence 6666665311 24789999999999751 1 246799999999999999999998753
Q ss_pred CCCceeEEEEEeCCCCCCCcchHHHHHhh
Q 017128 267 TRGRYNILFGLTSGGPYNYNGTHKWLRSF 295 (376)
Q Consensus 267 ~~p~~~I~F~~~~gEe~g~~GS~~~ve~~ 295 (376)
.+++++|.|+++..||.|..|++++++..
T Consensus 138 ~~~~~~i~l~~~~DEE~g~~G~~~l~~~~ 166 (466)
T PRK07318 138 LPLSKKVRFIVGTDEESGWKCMDYYFEHE 166 (466)
T ss_pred CCCCccEEEEEEcccccCchhHHHHHHhC
Confidence 45677899999999999999999999864
No 71
>TIGR01887 dipeptidaselike dipeptidase, putative. This model represents a clade of probable zinc dipeptidases, closely related to the characterized non-specific dipeptidase, PepV. Many enzymes in this clade have been given names including the terms "Xaa-His" and "carnosinase" due to the early mis-characterization of the Lactobacillus delbrueckii PepV enzyme. These names are likely too specific.
Probab=97.12 E-value=0.0018 Score=67.08 Aligned_cols=72 Identities=13% Similarity=0.140 Sum_probs=60.6
Q ss_pred CCEEEEEecCCCCCCCC---------------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCC
Q 017128 219 LPTIAIVASYDTFGAAP---------------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPY 283 (376)
Q Consensus 219 ~~~IvI~AHyDs~g~~~---------------~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~ 283 (376)
.|.|++.+|+|+++..+ -++.|+.|.-.|+++++..++.|.+.. ..++++|.|+++..||.
T Consensus 67 ~~~l~l~gH~D~Vp~~~~W~~~Pf~~~~~~g~lyGRGa~D~KG~laa~l~a~~~l~~~~----~~~~~~i~~~~~~dEE~ 142 (447)
T TIGR01887 67 EEYLGILGHLDVVPAGDGWTSPPFEAEIKDGRIYGRGTLDDKGPTIAALYAMKILKELG----LKLKKKIRFIFGTDEET 142 (447)
T ss_pred CCeEEEEeecCCCCCCCCCcCCCCceEEECCEEEECCcccCcHHHHHHHHHHHHHHHcC----CCCCCcEEEEEECCccc
Confidence 47899999999997521 246788899899999999999997753 34678999999999999
Q ss_pred CCcchHHHHHh
Q 017128 284 NYNGTHKWLRS 294 (376)
Q Consensus 284 g~~GS~~~ve~ 294 (376)
|..|+++|+++
T Consensus 143 g~~g~~~~l~~ 153 (447)
T TIGR01887 143 GWACIDYYFEH 153 (447)
T ss_pred CcHhHHHHHHh
Confidence 99999999976
No 72
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=96.75 E-value=0.007 Score=61.15 Aligned_cols=82 Identities=20% Similarity=0.260 Sum_probs=61.7
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~--------~---------~~~~GAddn~SGva~LLElar~fs~l~~ 263 (376)
.|+++.+ |.. .++|++.+|+|+++.. | -++.|+.|.=.|++++|..++.|.+..
T Consensus 57 ~~v~~~~-g~~-------~~~l~l~~H~DtVp~~~~~~W~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~a~~~l~~~~- 127 (395)
T TIGR03526 57 GNVLGYI-GHG-------PKLIAMDAHIDTVGIGDMDQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLG- 127 (395)
T ss_pred CcEEEEe-CCC-------CCEEEEEeeccccCCCCcccccCCCCceEEECCEEEecCccccchhHHHHHHHHHHHHHcC-
Confidence 4889987 422 4789999999999852 1 135789999999999999999998753
Q ss_pred CCCCCCceeEEEEEeCCCC-CCCcchHHHHHh
Q 017128 264 NPKTRGRYNILFGLTSGGP-YNYNGTHKWLRS 294 (376)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe-~g~~GS~~~ve~ 294 (376)
..++.++.|++..+|| .+-.|+++++++
T Consensus 128 ---~~~~~~v~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03526 128 ---LLDDYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred ---CCCCceEEEEEecccccCCcHhHHHHHhc
Confidence 2356789999888888 333466777754
No 73
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=96.64 E-value=0.012 Score=59.35 Aligned_cols=82 Identities=20% Similarity=0.234 Sum_probs=60.1
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC--------C---------CCCCCCCCchhHHHHHHHHHHHHHhccC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA--------P---------ALSVGSDSNGSGVVALLEVARLFSLLYS 263 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~--------~---------~~~~GAddn~SGva~LLElar~fs~l~~ 263 (376)
.|++|++ |.. .|+|++.+|+|+++.. | -++.|+.|.-.|++++|..++.|.+..
T Consensus 57 ~n~~~~~-g~~-------~~~l~l~~H~DtVp~~~~~~w~~~Pf~~~~~~g~lyGrG~~D~Kg~~aa~l~A~~~l~~~g- 127 (395)
T TIGR03320 57 GNVLGYI-GHG-------PKLIAMDAHIDTVGIGDSKQWQFDPYEGYEDEEIIYGRGASDQEGGIASMVYAGKIIKDLG- 127 (395)
T ss_pred CCEEEEe-CCC-------CcEEEEEecccccCCCCccccccCCCceEEECCEEEecCccCccchHHHHHHHHHHHHHcC-
Confidence 4889987 422 4789999999999752 1 135899999999999999999997753
Q ss_pred CCCCCCceeEEEEEeCCCCCC-CcchHHHHHh
Q 017128 264 NPKTRGRYNILFGLTSGGPYN-YNGTHKWLRS 294 (376)
Q Consensus 264 ~~~~~p~~~I~F~~~~gEe~g-~~GS~~~ve~ 294 (376)
..++.++.|++..+||.+ -.|++.++++
T Consensus 128 ---~~~~~~i~~~~~~dEE~~~g~~~~~~~~~ 156 (395)
T TIGR03320 128 ---LLDDYTLLVTGTVQEEDCDGLCWQYIIEE 156 (395)
T ss_pred ---CCCCceEEEEecccccccCchHHHHHHHh
Confidence 235678989888878853 2344555543
No 74
>PRK08737 acetylornithine deacetylase; Provisional
Probab=96.30 E-value=0.013 Score=58.98 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=58.0
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC------C--------C-CCCCCCCchhHHHHHHHHHHHHHhccCC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA------P--------A-LSVGSDSNGSGVVALLEVARLFSLLYSN 264 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~------~--------~-~~~GAddn~SGva~LLElar~fs~l~~~ 264 (376)
..|+++. .| .|.|++.+|+|+++.. | . ++.|+.|-=+|++++|..++.
T Consensus 54 ~~nli~~-~g---------~~~lll~gH~DtVp~~~~w~~~Pf~~~~~~g~lyGrGa~DmKg~~aa~l~a~~~------- 116 (364)
T PRK08737 54 AVSLYAV-RG---------TPKYLFNVHLDTVPDSPHWSADPHVMRRTDDRVIGLGVCDIKGAAAALLAAANA------- 116 (364)
T ss_pred ceEEEEE-cC---------CCeEEEEeeeCCCCCCCCCCCCCCceEEECCEEEEECcccchHHHHHHHHHHHc-------
Confidence 4688885 23 2579999999999862 1 1 456999987899999998863
Q ss_pred CCCCCceeEEEEEeCCCCCCC-cchHHHHHhh
Q 017128 265 PKTRGRYNILFGLTSGGPYNY-NGTHKWLRSF 295 (376)
Q Consensus 265 ~~~~p~~~I~F~~~~gEe~g~-~GS~~~ve~~ 295 (376)
+..+|.|+++..||.|- .|++++++..
T Consensus 117 ----~~~~v~~~~~~dEE~g~~~g~~~~~~~~ 144 (364)
T PRK08737 117 ----GDGDAAFLFSSDEEANDPRCVAAFLARG 144 (364)
T ss_pred ----cCCCEEEEEEcccccCchhhHHHHHHhC
Confidence 13479999999999876 7999998863
No 75
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=96.15 E-value=0.032 Score=54.80 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=64.8
Q ss_pred CCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccccC------
Q 017128 241 SDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGS------ 314 (376)
Q Consensus 241 Addn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig~------ 314 (376)
|-||-.|+++|+|++|.+..-. .++++.|+++..||.|+.|++.......+ +.+|.+|..-.
T Consensus 132 alDdR~g~~~lle~l~~l~~~~------~~~~v~~v~tvqEEvG~rGA~~aa~~i~P------D~ai~vD~~~a~d~~~~ 199 (292)
T PF05343_consen 132 ALDDRAGCAVLLELLRELKEKE------LDVDVYFVFTVQEEVGLRGAKTAAFRIKP------DIAIAVDVTPAGDTPGS 199 (292)
T ss_dssp THHHHHHHHHHHHHHHHHTTSS-------SSEEEEEEESSCTTTSHHHHHHHHHH-C------SEEEEEEEEEESSSTTS
T ss_pred eCCchhHHHHHHHHHHHHhhcC------CCceEEEEEEeeeeecCcceeecccccCC------CEEEEEeeeccCCCCCC
Confidence 4588899999999999988642 35999999999999999999988776432 34555554322
Q ss_pred CC-------CceEEEecCCCCchHHHHHHHHHHHHhhhcCceeee
Q 017128 315 WN-------NELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGL 352 (376)
Q Consensus 315 ~~-------~~L~lh~s~~p~~~~~~~l~~~l~~~a~~~~i~~~~ 352 (376)
.. ++......+.+ .....+.+.+.++|++.++.++.
T Consensus 200 ~~~~~~lG~Gp~i~~~D~~~--i~~~~l~~~l~~~A~~~~Ip~Q~ 242 (292)
T PF05343_consen 200 DEKEQGLGKGPVIRVGDSSM--IPNPKLVDKLREIAEENGIPYQR 242 (292)
T ss_dssp TTTTSCTTS-EEEEEEETTE--ESHHHHHHHHHHHHHHTT--EEE
T ss_pred chhhccCCCCcEEEEccCCC--CCCHHHHHHHHHHHHHcCCCeEE
Confidence 11 12222222222 11346777788889998888876
No 76
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=95.64 E-value=0.072 Score=53.69 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=68.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccccCCC--
Q 017128 239 VGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWN-- 316 (376)
Q Consensus 239 ~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig~~~-- 316 (376)
.-|-||-.|+++|+|++|.+.+. .+++++.|+++..||.|+.|++.-.....+ +.+|.+|..-..+
T Consensus 174 ~kalDdR~g~a~l~e~l~~l~~~------~~~~~l~~~~tvqEEvG~rGA~~aa~~i~p------D~aI~vDv~~~~d~~ 241 (350)
T TIGR03107 174 SKAWDNRYGVLMILELLESLKDQ------ELPNTLIAGANVQEEVGLRGAHVSTTKFNP------DIFFAVDCSPAGDIY 241 (350)
T ss_pred EeccccHHHHHHHHHHHHHhhhc------CCCceEEEEEEChhhcCchhhhhHHhhCCC------CEEEEEecCCcCCCC
Confidence 34568999999999999999643 357899999999999999999976655322 3566666543321
Q ss_pred ---------CceEEEecCCCCchHHHHHHHHHHHHhhhcCceeee
Q 017128 317 ---------NELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGL 352 (376)
Q Consensus 317 ---------~~L~lh~s~~p~~~~~~~l~~~l~~~a~~~~i~~~~ 352 (376)
++......+.+ .....+.+.+.++|++.|++++.
T Consensus 242 ~~~~~~lg~Gp~i~~~D~~~--i~~~~l~~~l~~~A~~~~I~~Q~ 284 (350)
T TIGR03107 242 GDQGGKLGEGTLLRFFDPGH--IMLPRMKDFLLTTAEEAGIKYQY 284 (350)
T ss_pred CCCccccCCCceEEEecCCC--CCCHHHHHHHHHHHHHcCCCcEE
Confidence 12211221111 11336777787889998888876
No 77
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=95.63 E-value=0.027 Score=56.84 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=71.3
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccccCCCC
Q 017128 238 SVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNN 317 (376)
Q Consensus 238 ~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig~~~~ 317 (376)
..=|-||=.|+++|||++|.+. . ..++.++.|+++.-||.|+.|++-...+..+ +..|.+|..+.. +
T Consensus 175 ~skalDdR~gva~lle~lk~l~--~----~~~~~~vy~v~tvqEEVGlrGA~~~a~~i~p------d~aiavd~~~~~-d 241 (355)
T COG1363 175 VSKALDDRAGVAALLELLKELK--G----IELPADVYFVASVQEEVGLRGAKTSAFRIKP------DIAIAVDVTPAG-D 241 (355)
T ss_pred EeeeccchHhHHHHHHHHHHhc--c----CCCCceEEEEEecchhhccchhhccccccCC------CEEEEEeccccc-C
Confidence 4456789999999999999994 2 2368899999999999999999988876433 356666766654 2
Q ss_pred ce-----EEEecCCC-------CchHHHHHHHHHHHHhhhcCceeeec
Q 017128 318 EL-----WIHVSKPP-------ENAYIKQIFEGFTNVAEELGFKVGLK 353 (376)
Q Consensus 318 ~L-----~lh~s~~p-------~~~~~~~l~~~l~~~a~~~~i~~~~v 353 (376)
.. ....++.| .......+.+.|.++|++.|+.+++=
T Consensus 242 ~~~~~~~~~~lg~Gp~i~~~D~~~~~~~~l~~~L~~~A~~~~Ip~Q~~ 289 (355)
T COG1363 242 TPGVPKGDVKLGKGPVIRVKDASGIYHPKLRKFLLELAEKNNIPYQVD 289 (355)
T ss_pred CCCCcccccccCCCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 21 11222222 12224567777778888888877653
No 78
>KOG3566 consensus Glycosylphosphatidylinositol anchor attachment protein GAA1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.3 Score=51.79 Aligned_cols=79 Identities=29% Similarity=0.442 Sum_probs=61.8
Q ss_pred CCCCcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEE
Q 017128 196 ASPTITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILF 275 (376)
Q Consensus 196 ~~~~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F 275 (376)
++..+.||+|.|++-.. | ..+-||++..|+... |. |--|++.++.+++.|++... ..++|+|
T Consensus 116 e~y~G~NvyGilRAPRg--d--gtEsivl~vP~~~~~-------~~--~~~~v~l~lsla~~f~r~~y-----WsKDII~ 177 (617)
T KOG3566|consen 116 EEYSGENVYGILRAPRG--D--GTESIVLVVPYGRSS-------GS--NSASVALLLSLADYFSRWVY-----WSKDIIF 177 (617)
T ss_pred hhcCCceEEEEEecCCC--C--CcceEEEEEecccCC-------Cc--chhHHHHHHHHHHHhcCCee-----ecccEEE
Confidence 44458999999987543 2 378999999999762 22 35678999999999998632 3789999
Q ss_pred EEeCCCCCCCcchHHHHHhh
Q 017128 276 GLTSGGPYNYNGTHKWLRSF 295 (376)
Q Consensus 276 ~~~~gEe~g~~GS~~~ve~~ 295 (376)
+++++ .+.|.+.|++.+
T Consensus 178 v~~d~---~~~g~~AwLeaY 194 (617)
T KOG3566|consen 178 VFTDG---PALGLDAWLEAY 194 (617)
T ss_pred EEeCC---ccccHHHHHHHh
Confidence 99998 678899999975
No 79
>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]
Probab=95.34 E-value=0.15 Score=52.68 Aligned_cols=106 Identities=18% Similarity=0.170 Sum_probs=82.3
Q ss_pred CcceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCCC-------------------------------------CC-CCC
Q 017128 199 TITNIQGWLQGLKADGDANQLPTIAIVASYDTFGAAP-------------------------------------AL-SVG 240 (376)
Q Consensus 199 ~~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~~-------------------------------------~~-~~G 240 (376)
.-.||.+-++|.. ...+||+.+|||++++.. |+ +-|
T Consensus 64 gR~nv~AlVrg~~------~k~tvvl~gH~DtV~iedYg~lKd~Afdp~~ll~~~i~~~e~~~erv~~Dl~SGDwlfGRG 137 (553)
T COG4187 64 GRRNVFALVRGGT------SKRTVVLHGHFDTVSIEDYGELKDLAFDPLALLDALIESLELREERVLRDLESGDWLFGRG 137 (553)
T ss_pred ccceeEEEEecCC------CCceEEEeeccceeecccccchhhhccCHHHHHHHHHHhhccCHHHHhhhhhccCcccCCC
Confidence 3679999999943 378999999999998821 22 468
Q ss_pred CCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhH---hhhcCeeEEEEeccccCC
Q 017128 241 SDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQ---RLRESIDYAICLNSVGSW 315 (376)
Q Consensus 241 Addn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~---~~~~~i~~vInLD~ig~~ 315 (376)
+.|=-||.|+-|..-..|++- +.-+-||+|+...-||..-.|.+.-+..... ...-.+.++||+|-++..
T Consensus 138 a~DMKsGlav~la~L~~fa~~-----~~~~GNlLf~a~pdEE~~s~G~r~a~~~L~~L~kk~~l~~~~~IN~D~~~~~ 210 (553)
T COG4187 138 ALDMKSGLAVHLACLEEFAAR-----TDRQGNLLFMAVPDEEVESRGMREARPALPGLKKKFDLEYTAAINLDVTSDQ 210 (553)
T ss_pred chhhhhhhHHHHHHHHHHhhC-----CCCCCcEEEEeccchhhhcccHHHHHHHHHHHHHhhCceEEEEeccccccCC
Confidence 999999999988888877763 2346799999999999999999988876542 222346789999988764
No 80
>PRK09864 putative peptidase; Provisional
Probab=95.13 E-value=0.11 Score=52.47 Aligned_cols=100 Identities=9% Similarity=0.080 Sum_probs=67.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccccCCCC-
Q 017128 239 VGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNN- 317 (376)
Q Consensus 239 ~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig~~~~- 317 (376)
.=|-||-.|+++|+|++|.+.+ +++++.|+++..||.|+.|++.-.....+ +.+|.+|..-..+.
T Consensus 171 ~kalDnR~g~~~lle~l~~l~~--------~~~~vy~v~TvQEEvGlrGA~~aa~~i~P------DiaIavDvt~~~d~p 236 (356)
T PRK09864 171 GKALDNRIGCAMMAELLQTVNN--------PEITLYGVGSVEEEVGLRGAQTSAEHIKP------DVVIVLDTAVAGDVP 236 (356)
T ss_pred EEeCccHHHHHHHHHHHHHhhc--------CCCeEEEEEEcchhcchHHHHHHHhcCCC------CEEEEEecccCCCCC
Confidence 3456888999999999998853 47899999999999999999988776533 24677775432210
Q ss_pred ---c-eE-EEecCCC--C-----chHHHHHHHHHHHHhhhcCceeee
Q 017128 318 ---E-LW-IHVSKPP--E-----NAYIKQIFEGFTNVAEELGFKVGL 352 (376)
Q Consensus 318 ---~-L~-lh~s~~p--~-----~~~~~~l~~~l~~~a~~~~i~~~~ 352 (376)
. -+ ...++.| . .-....+.+.+.++|++.||+++.
T Consensus 237 ~~~~~~~~~~lG~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~ 283 (356)
T PRK09864 237 GIDNIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKSCAAHNDLPLQF 283 (356)
T ss_pred CCcccccccccCCCCeEEEccCCccCCHHHHHHHHHHHHHcCCCceE
Confidence 0 00 1122222 0 011236777777889888888776
No 81
>PRK09961 exoaminopeptidase; Provisional
Probab=94.96 E-value=0.09 Score=52.80 Aligned_cols=103 Identities=16% Similarity=0.108 Sum_probs=68.0
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccccCCCC
Q 017128 238 SVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSWNN 317 (376)
Q Consensus 238 ~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig~~~~ 317 (376)
..-|-||-.|+++++|++|.+.+. .++.+|.|+++..||.|+.|++.......+ +.+|.+|..-..+.
T Consensus 161 ~gkalDnR~g~~~lle~l~~l~~~------~~~~~v~~~~tvqEEvG~rGa~~aa~~i~p------d~~I~vDv~~~~d~ 228 (344)
T PRK09961 161 MGKAFDDRLGCYLLVTLLRELHDA------ELPAEVWLVASSSEEVGLRGGQTATRAVSP------DVAIVLDTACWAKN 228 (344)
T ss_pred EEeechhhHhHHHHHHHHHHhhhc------CCCceEEEEEEcccccchHHHHHHHhccCC------CEEEEEeccCCCCC
Confidence 345678999999999999988642 357899999999999999999988766422 35777776644310
Q ss_pred -ce-E---EEecCCC--C-----chHHHHHHHHHHHHhhhcCceeee
Q 017128 318 -EL-W---IHVSKPP--E-----NAYIKQIFEGFTNVAEELGFKVGL 352 (376)
Q Consensus 318 -~L-~---lh~s~~p--~-----~~~~~~l~~~l~~~a~~~~i~~~~ 352 (376)
.. . ...++.| + ......+.+.+.++|++.+++++.
T Consensus 229 ~~~~~~~~~~lg~Gp~i~~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~ 275 (344)
T PRK09961 229 FDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGIPLQA 275 (344)
T ss_pred CCCCCCcccccCCCceEEEccCCcCCCHHHHHHHHHHHHHcCCCcEE
Confidence 00 0 1112212 0 111235666666778877777665
No 82
>COG4310 Uncharacterized protein conserved in bacteria with an aminopeptidase-like domain [General function prediction only]
Probab=94.74 E-value=0.096 Score=51.81 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=69.4
Q ss_pred CCEEEEEecCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHh
Q 017128 219 LPTIAIVASYDTFGAAPALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQR 298 (376)
Q Consensus 219 ~~~IvI~AHyDs~g~~~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~ 298 (376)
...|++++|.=|= .=|+||-||.|.+.-||+.++.+. + +|+-.|++-. .-+||-.|+......
T Consensus 178 ~~eiLlst~lCHP-------SmaNdn~SG~all~~lak~l~~~k----t--rysYRfvf~P----~TiGsi~wLsrnee~ 240 (435)
T COG4310 178 KDEILLSTYLCHP-------SMANDNLSGLALLTFLAKALKSLK----T--RYSYRFVFAP----ETIGSIVWLSRNEEC 240 (435)
T ss_pred cceeeeeecccCh-------hhccCccchHHHHHHHHHHHHhcc----c--eeeEEEEecc----cccchhhhHhcchhH
Confidence 6789999999875 347899999999999999999885 2 6777777765 458999999987664
Q ss_pred hhcCeeEEEEeccccCCCCceEEEec
Q 017128 299 LRESIDYAICLNSVGSWNNELWIHVS 324 (376)
Q Consensus 299 ~~~~i~~vInLD~ig~~~~~L~lh~s 324 (376)
+++|..-+-+.++|.++.+=|.+.-
T Consensus 241 -lkhvk~GlVlsClGD~g~~nykrtr 265 (435)
T COG4310 241 -LKHVKHGLVLSCLGDGGGPNYKRTR 265 (435)
T ss_pred -HhhhhcceEEEEecCCCCccceecc
Confidence 5688888888888876555565543
No 83
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=93.34 E-value=0.46 Score=47.76 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=60.1
Q ss_pred CCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccccCC------
Q 017128 242 DSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSW------ 315 (376)
Q Consensus 242 ddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig~~------ 315 (376)
-||=.|++++++++|.+.+.. ..++++|.|+++..||.| .|+.+-+. .++.-+|.+|.....
T Consensus 182 ~D~K~G~a~~l~~~~~l~~~~----~~~~~~v~~~~t~qEEvG-~gaa~~i~-------pd~a~~i~vd~~~~~p~~~~l 249 (343)
T TIGR03106 182 LDDKAGVAALLAALKAIVEHK----VPLPVDVHPLFTITEEVG-SGASHALP-------PDVAELVSVDNGTVAPGQNSS 249 (343)
T ss_pred cccHHhHHHHHHHHHHHHhcC----CCCCceEEEEEECCcccC-ccchhccc-------HhhhccEEEEecccCCCCCcC
Confidence 788899999999999998652 346789999999999999 56422211 122223444432111
Q ss_pred -CC-ceEEEecCCCCchHHHHHHHHHHHHhhhcCceeee
Q 017128 316 -NN-ELWIHVSKPPENAYIKQIFEGFTNVAEELGFKVGL 352 (376)
Q Consensus 316 -~~-~L~lh~s~~p~~~~~~~l~~~l~~~a~~~~i~~~~ 352 (376)
.+ .+...-..++- ...+.+.+.++|++.+++++.
T Consensus 250 g~Gp~i~~~d~~~~~---~~~l~~~l~~~A~~~~Ip~Q~ 285 (343)
T TIGR03106 250 EHGVTIAMADSSGPF---DYHLTRKLIRLCQDHGIPHRR 285 (343)
T ss_pred CCCceEEEecCCCCC---CHHHHHHHHHHHHHcCCCcEE
Confidence 11 22122112223 236777777889888888775
No 84
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=92.19 E-value=1 Score=46.23 Aligned_cols=94 Identities=18% Similarity=0.152 Sum_probs=67.7
Q ss_pred ceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCCC-----------CCCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCC
Q 017128 201 TNIQGWLQGLKADGDANQLPTIAIVASYDTFGAA-----------PALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRG 269 (376)
Q Consensus 201 ~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~~-----------~~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p 269 (376)
+=|+|.+.|.. +.|+|.+-|-||..++. |+..++..-| .-++++|-.|+.|++... ..
T Consensus 57 TGvva~~~~g~------~g~tIalRAD~DALPi~E~t~~~~~S~~~G~mHACGHD-~Hta~lLgaA~~L~~~~~----~~ 125 (392)
T COG1473 57 TGVVATLKGGK------PGPTIALRADMDALPIQEETGLPFASKNPGVMHACGHD-GHTAILLGAALALAEHKD----NL 125 (392)
T ss_pred eEEEEEEcCCC------CCCEEEEEeecccCccccccCCCcccCCCCCcccCCch-HHHHHHHHHHHHHHhhhh----hC
Confidence 35889998765 25699999999999961 2333333333 347889999999998742 35
Q ss_pred ceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcC-eeEEEEe
Q 017128 270 RYNILFGLTSGGPYNYNGTHKWLRSFDQRLRES-IDYAICL 309 (376)
Q Consensus 270 ~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~-i~~vInL 309 (376)
+-+|.|++--+||.+- |.+.++++- ..++ +++++-+
T Consensus 126 ~Gtv~~ifQPAEE~~~-Ga~~mi~~G---~~~~~vD~v~g~ 162 (392)
T COG1473 126 PGTVRLIFQPAEEGGG-GAKAMIEDG---VFDDFVDAVFGL 162 (392)
T ss_pred CcEEEEEecccccccc-cHHHHHhcC---CccccccEEEEe
Confidence 7799999999999766 999999974 2344 5555443
No 85
>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]
Probab=83.72 E-value=4.8 Score=41.43 Aligned_cols=86 Identities=12% Similarity=0.179 Sum_probs=68.5
Q ss_pred CCCEEEEEecCCCCCCC---C--------------CCCCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCC
Q 017128 218 QLPTIAIVASYDTFGAA---P--------------ALSVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSG 280 (376)
Q Consensus 218 ~~~~IvI~AHyDs~g~~---~--------------~~~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~g 280 (376)
..+++++-.|||-.+.. + -.+-|+.|+---++.-.++.++|.++. ...+.||.|++=+-
T Consensus 90 ~KktvlvYgHlDVqpA~~~DgW~TdPF~Lt~~~GkL~GRG~TDdkGPv~~wi~av~a~~~~g----~~lpvnv~f~~Egm 165 (473)
T KOG2276|consen 90 SKKTVLVYGHLDVQPANLEDGWNTDPFTLTEDDGKLFGRGATDDKGPVLSWIHAVKALQQLG----IDLPVNVVFVFEGM 165 (473)
T ss_pred CcceEEEEeeeeeeecCCCCCCcCCCeEEEEECCEEeccCcCCCCccchHHHHHHHHHHHhC----ccccceEEEEEEec
Confidence 47899999999987763 1 135689998888999999999999875 34689999999999
Q ss_pred CCCCCcchHHHHHhhhHhhhcCeeEEE
Q 017128 281 GPYNYNGTHKWLRSFDQRLRESIDYAI 307 (376)
Q Consensus 281 Ee~g~~GS~~~ve~~~~~~~~~i~~vI 307 (376)
||.|-.|-...++.........++++.
T Consensus 166 EEsgS~~L~~l~~~~kD~~~~~vD~vc 192 (473)
T KOG2276|consen 166 EESGSEGLDELIEKEKDKFFKDVDFVC 192 (473)
T ss_pred hhccCccHHHHHHHHhhhhhccCCEEE
Confidence 999999999999875444455566643
No 86
>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.
Probab=63.95 E-value=7 Score=39.30 Aligned_cols=28 Identities=36% Similarity=0.476 Sum_probs=23.1
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~ 233 (376)
..|+++.++|.. ..|.|+++||.|+.|.
T Consensus 45 ~Gnlia~~~g~~------~~~~v~l~aHmDevG~ 72 (343)
T TIGR03106 45 RGAIRATLPGRE------ATPARAVVTHLDTLGA 72 (343)
T ss_pred CeEEEEEECCCC------CCCeEEEEEeeccccc
Confidence 579999998843 2468999999999987
No 87
>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M42 (glutamyl aminopeptidase family, clan MH). For members of this family and family M28 the predicted metal ligands occur in the same order in the sequence: H, D, E, D/E, H; and the active site residues occur in the motifs HXD and EE. ; PDB: 2WYR_C 2CF4_A 1VHO_A 3ISX_A 3KL9_G 1YLO_F 3CPX_C 1VHE_A 2GRE_F 1XFO_A ....
Probab=63.14 E-value=5.7 Score=39.04 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=18.8
Q ss_pred eEEEEEcCcCCCCCCCCCCEEEEEecCCCCCC
Q 017128 202 NIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (376)
Q Consensus 202 NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~ 233 (376)
||+++++|.. ..|.|+|+||.|..|+
T Consensus 2 nvi~~~~g~~------~~~~vmi~AHmDEiG~ 27 (292)
T PF05343_consen 2 NVIARKKGKE------GGPKVMIAAHMDEIGF 27 (292)
T ss_dssp -EEEEECSSC------SSSEEEEEEE--B-EE
T ss_pred cEEEEECCCC------CCceEEEEEccceeeE
Confidence 8999999932 3789999999999986
No 88
>PRK09961 exoaminopeptidase; Provisional
Probab=62.37 E-value=6.9 Score=39.31 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.3
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~ 233 (376)
.-|+++++.|.+ .|.|++.||.|+.|.
T Consensus 42 ~Gnvi~~~~g~~-------~~~v~l~aHmDevg~ 68 (344)
T PRK09961 42 LGSVLIRLNEST-------GPKVMICAHMDEVGF 68 (344)
T ss_pred CCCEEEEEcCCC-------CCEEEEEeccceece
Confidence 569999987732 468999999999987
No 89
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=62.29 E-value=60 Score=25.51 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=41.5
Q ss_pred CcccceEEEEecCCCCH-HHHHHHHhccCCccEEEEecCccccccCCCCCCCchhhHHHHHHHHHHHHHhhcCCCCCcEE
Q 017128 73 ADLSRTVVMIPVRELNI-SFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVY 151 (376)
Q Consensus 73 ~~~~R~~vv~~~~d~t~-~~~~~l~~~~~~a~gvli~lP~~~~~~s~~~~n~~~~~~~~~~~~~~le~~Ll~~~~~iPVy 151 (376)
.....+.||++.-.-+. +.+... ++.+|.|+||+.+........ .........||+-
T Consensus 30 ~~~~gkIvlv~rg~~~~~~k~~~a--~~~GA~gvIi~~~~~~~~~~~--------------------~~~~~~~~~iP~v 87 (101)
T PF02225_consen 30 SDVKGKIVLVERGSCSFDDKVRNA--QKAGAKGVIIYNPPPNNGSMI--------------------DSEDPDPIDIPVV 87 (101)
T ss_dssp STCTTSEEEEESTSSCHHHHHHHH--HHTTESEEEEE-TSCSCTTTT--------------------CEBTTTSTBSEEE
T ss_pred ccccceEEEEecCCCCHHHHHHHH--HHcCCEEEEEEeCCccccCcc--------------------cccCCCCcEEEEE
Confidence 46778899997777663 233322 346899999998222111000 1123456889999
Q ss_pred EeechhHHHHHHHH
Q 017128 152 FAFENDEIDAVLDD 165 (376)
Q Consensus 152 fi~~~~~~~~i~~~ 165 (376)
++.+ ++.+.|++.
T Consensus 88 ~I~~-~~g~~L~~~ 100 (101)
T PF02225_consen 88 FISY-EDGEALLAY 100 (101)
T ss_dssp EE-H-HHHHHHHHH
T ss_pred EeCH-HHHhhhhcc
Confidence 9975 478877764
No 90
>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]
Probab=55.17 E-value=10 Score=38.56 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=23.0
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~ 233 (376)
.-|++++++|.+ ..+.|+|+||.|..|.
T Consensus 44 lGnlia~~~g~~------g~~~imi~AHmDEiG~ 71 (355)
T COG1363 44 LGNLIAKKGGKN------GPPKVMIAAHMDEIGF 71 (355)
T ss_pred CCcEEEEecCCC------CCccEEEEeecceeee
Confidence 569999999943 2466999999999987
No 91
>TIGR03107 glu_aminopep glutamyl aminopeptidase. This model represents the M42.001 clade within MEROPS family M42. M42 includes glutamyl aminopeptidase as in the present model, deblocking aminopeptidases as from Pyrococcus horikoshii and related species, and endo-1,4-beta-glucanase (cellulase M) as from Clostridium thermocellum. The current family includes
Probab=53.96 E-value=11 Score=37.96 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=22.8
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~ 233 (376)
.-||+|.++|... ..|.|++.||.|+.|+
T Consensus 40 ~GNvia~~~g~~~-----~~~~vml~AHmDeVGf 68 (350)
T TIGR03107 40 LGGIFGIKESQVE-----NAPRVMVAAHMDEVGF 68 (350)
T ss_pred CCCEEEEecCCCC-----CCCEEEEEecccEeCE
Confidence 4699999877411 2469999999999987
No 92
>PRK02256 putative aminopeptidase 1; Provisional
Probab=51.73 E-value=26 Score=36.85 Aligned_cols=46 Identities=9% Similarity=-0.035 Sum_probs=36.2
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHH
Q 017128 238 SVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKW 291 (376)
Q Consensus 238 ~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ 291 (376)
+..+-||=.|+.+++|..+... .+...+++++|+-||.|..|.+--
T Consensus 255 ~s~rLDNr~~~~~~leal~~~~--------~~~~~~~~~~~dqEEVGs~ga~gA 300 (462)
T PRK02256 255 GAYGQDDRVCAYTSLEALLELE--------NPEKTAVVLLVDKEEIGSEGNTGA 300 (462)
T ss_pred eccccccHHHHHHHHHHHHhcc--------cCCCeEEEEEEcccccCCcchhhh
Confidence 5677889999999999987643 135688999999999988766543
No 93
>PRK02813 putative aminopeptidase 2; Provisional
Probab=46.58 E-value=1.6e+02 Score=30.66 Aligned_cols=124 Identities=15% Similarity=0.058 Sum_probs=70.3
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCc---chHH-HHHh----hhHh---------hh
Q 017128 238 SVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYN---GTHK-WLRS----FDQR---------LR 300 (376)
Q Consensus 238 ~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~---GS~~-~ve~----~~~~---------~~ 300 (376)
..++-||=.|+.+++|..+.... +..+++++|+-||.|.. |++- |+++ .... ..
T Consensus 229 ~s~~lDnr~~~~~~l~al~~~~~---------~~~~~~~~~d~EEVGs~~~~GA~s~~l~~~l~ri~~~~~~~~~~~~~~ 299 (428)
T PRK02813 229 SSGRLDNLSSCHAGLEALLAAAS---------DATNVLAAFDHEEVGSATKQGADSPFLEDVLERIVLALGGDREDFLRA 299 (428)
T ss_pred EEecchhHHHHHHHHHHHHhcCC---------CCeEEEEEEecCccCCCCCcccCchhHHHHHHHHHHhhcCchHHHHHh
Confidence 45566788889999888875421 56889999999999988 8773 2222 1110 01
Q ss_pred cCeeEEEEeccccCC--C-CceE-----EEecCCC--C------chHHHHHHHHHHHHhhhcCceeeeccccccc-CchH
Q 017128 301 ESIDYAICLNSVGSW--N-NELW-----IHVSKPP--E------NAYIKQIFEGFTNVAEELGFKVGLKHKKINI-SNPR 363 (376)
Q Consensus 301 ~~i~~vInLD~ig~~--~-~~L~-----lh~s~~p--~------~~~~~~l~~~l~~~a~~~~i~~~~vhkkin~-~~~~ 363 (376)
-+-.++|.+|+.-.. + ...+ ....+.| + -.....+...+.++|.+.+|.++.-..+-.. .-.+
T Consensus 300 i~~s~~IS~DvahA~hPn~~~~~~~~~~~~lg~GpvIk~~~~~~y~t~~~~~a~~~~ia~~~~Ip~Q~~v~~~d~~gGst 379 (428)
T PRK02813 300 LARSFLISADMAHAVHPNYPEKHDPTHRPLLNKGPVIKINANQRYATDAESAAVFKLLCEKAGVPYQEFVNRSDMPCGST 379 (428)
T ss_pred hCCCeEEEEeccCCCCCCCCCccCcccCccCCcCCeEEECCCCCcccCHHHHHHHHHHHHHcCCCEEEEEecCCCCCccH
Confidence 123578888876332 1 0000 0011111 1 0012233444556788889988875544333 2666
Q ss_pred HHHHHHh
Q 017128 364 VIKLLSA 370 (376)
Q Consensus 364 ~~~~~~~ 370 (376)
++.++++
T Consensus 380 ig~i~~s 386 (428)
T PRK02813 380 IGPITAA 386 (428)
T ss_pred HHHHHHh
Confidence 7777764
No 94
>PTZ00371 aspartyl aminopeptidase; Provisional
Probab=44.93 E-value=1.2e+02 Score=31.89 Aligned_cols=127 Identities=9% Similarity=-0.046 Sum_probs=71.4
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCee-------------
Q 017128 238 SVGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESID------------- 304 (376)
Q Consensus 238 ~~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~------------- 304 (376)
...+-||=.|+.++||..+....... ..+....++++|+-||.|..|.+--...+.+..+++|.
T Consensus 246 ~s~rlDnr~~~~~~l~al~~~~~~~~---~~~~~~~v~~~~d~EEVGs~ga~GA~s~~l~d~l~ri~~~~~~~~~~~~~~ 322 (465)
T PTZ00371 246 SSPRLDNLGSSFCAFKALTEAVESLG---ENSSNIRMVCLFDHEEVGSSSSQGAGSSLLPDTIERILSSLSASNNSSDDS 322 (465)
T ss_pred EEecchhHHHHHHHHHHHHhcccccc---CCCCceEEEEEECCcCCCCCcchhccccccHHHHHHHHHhhccccccchhH
Confidence 45667888999999998876532100 11344455566999999988877554443222111111
Q ss_pred --------EEEEeccccC--CC---------------Cc-eEEEecCCC-CchHHHHHHHHHHHHhhhcCceeeeccccc
Q 017128 305 --------YAICLNSVGS--WN---------------NE-LWIHVSKPP-ENAYIKQIFEGFTNVAEELGFKVGLKHKKI 357 (376)
Q Consensus 305 --------~vInLD~ig~--~~---------------~~-L~lh~s~~p-~~~~~~~l~~~l~~~a~~~~i~~~~vhkki 357 (376)
++|.+|+.-. ++ +. |........ .++ .+...+.++|.+.||.++....+-
T Consensus 323 ~~~~~~~S~~IS~DvahA~hPn~~~~~d~~~~~~lg~GpvIk~~a~~~y~td~---~~~a~i~~la~~~~Ip~Q~~~~~~ 399 (465)
T PTZ00371 323 FAKLMARSFLLSVDMAHAVHPNYPEKHQANHRPKFHEGIVIKYNANQRYATNG---VTASLLKAIAKKANIPIQEFVVKN 399 (465)
T ss_pred HHHHHhccEEEEEecccccCCCCccccCCcCceeCCCCcEEEEeCCCCcccCH---HHHHHHHHHHHHcCCCEEEEEecC
Confidence 7888888644 21 11 111111112 243 444455566888899988754442
Q ss_pred c-cCchHHHHHHHh
Q 017128 358 N-ISNPRVIKLLSA 370 (376)
Q Consensus 358 n-~~~~~~~~~~~~ 370 (376)
. -.-.+++.++++
T Consensus 400 d~~~GsTig~i~~s 413 (465)
T PTZ00371 400 DSPCGSTIGPILSS 413 (465)
T ss_pred CCCCcchHHHHHHh
Confidence 2 235666777663
No 95
>PRK09864 putative peptidase; Provisional
Probab=34.00 E-value=36 Score=34.54 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=20.6
Q ss_pred cceEEEEEcCcCCCCCCCCCCEEEEEecCCCCCC
Q 017128 200 ITNIQGWLQGLKADGDANQLPTIAIVASYDTFGA 233 (376)
Q Consensus 200 ~~NV~g~L~G~~~~~~~~~~~~IvI~AHyDs~g~ 233 (376)
.-|+++.. |.+ .+.|+++||.|..|.
T Consensus 42 ~GNli~~~-g~~-------~~kvml~AHmDevG~ 67 (356)
T PRK09864 42 LGSFVARK-GNK-------GPKVAVVGHMDEVGF 67 (356)
T ss_pred CCCEEEEe-CCC-------CcEEEEEecccccCE
Confidence 46999986 521 358999999999987
No 96
>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]
Probab=33.66 E-value=50 Score=34.26 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=46.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHhccCCCCCCCceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEec
Q 017128 239 VGSDSNGSGVVALLEVARLFSLLYSNPKTRGRYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLN 310 (376)
Q Consensus 239 ~GAddn~SGva~LLElar~fs~l~~~~~~~p~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD 310 (376)
-||||- +|.+.+++..+.+..... .-+..+|.+.++.+||.|..|.+.+.-. .-.+.+.-++|
T Consensus 141 LgaD~k-AGia~i~~al~~~~~~~~---~i~h~~i~~g~s~~Ee~g~rg~~~~~~a-----~f~a~~ay~iD 203 (414)
T COG2195 141 LGADDK-AGIAEIMTALSVLREKHP---EIPHGGIRGGFSPDEEIGGRGAANKDVA-----RFLADFAYTLD 203 (414)
T ss_pred cCCcch-hHHHHHHHHHHHHhhcCc---cccccCeEEEecchHHhhhhhhhhccHH-----hhhcceeEecC
Confidence 577666 778888888887775421 2467899999999999999999988654 12245666777
No 97
>PF02261 Asp_decarbox: Aspartate decarboxylase; InterPro: IPR003190 Decarboxylation of aspartate is the major route of alanine production in bacteria, and is catalysed by the enzyme aspartate decarboxylase. The enzyme is translated as an inactive proenzyme of two chains, A and B. This family contains both chains of aspartate decarboxylase.; GO: 0004068 aspartate 1-decarboxylase activity, 0006523 alanine biosynthetic process; PDB: 1PYU_C 1AW8_A 1PYQ_B 3TM7_C 1PT1_A 1PQH_A 1PPY_B 1PT0_B 1PQF_A 1PQE_A ....
Probab=26.56 E-value=88 Score=26.77 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=40.0
Q ss_pred EEeeecCCCCccccccccccccccccccCCCCcccceEEEEecCCCCHHHHHHHHhccCCccEEEEecCcc
Q 017128 42 RLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRKHPLGGMLFLLPEI 112 (376)
Q Consensus 42 Rm~qyd~~g~~~Gsr~~~~~~ea~s~~~~~~~~~~R~~vv~~~~d~t~~~~~~l~~~~~~a~gvli~lP~~ 112 (376)
|+..|=+.|.+ ||+--.+|+.|.++- ...-.++++-...++.+.+..+.- -|+++.++|
T Consensus 54 Rf~TYvI~g~~-GSg~I~lNGaAArl~-----~~GD~vII~sy~~~~~~e~~~~~P------~vv~vd~~N 112 (116)
T PF02261_consen 54 RFETYVIPGER-GSGVICLNGAAARLV-----QVGDRVIIMSYAQVDEEEAKNHKP------KVVFVDEKN 112 (116)
T ss_dssp EEEEEEEEEST-TTT-EEEEGGGGGCS------TT-EEEEEEEEEEEHHHHHH---------EEEEEETTS
T ss_pred EEEEEEEEccC-CCcEEEECCHHHhcc-----CCCCEEEEEEcccCCHHHHhhCCC------EEEEECCCC
Confidence 56666666654 899999999999873 456678999999999777765422 266666655
No 98
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=26.53 E-value=1.1e+02 Score=26.11 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=43.3
Q ss_pred ccceEEEEecCCCCHHHHHHHHh-ccCCccEEEEec--CccccccCCCCCCCchhhHHHHHHH-HHHHHHhhcCCCCCcE
Q 017128 75 LSRTVVMIPVRELNISFVTEYVS-RKHPLGGMLFLL--PEIFRLENGGGGKDVREKEVVKNVL-LELEKLLVHAKLPYPV 150 (376)
Q Consensus 75 ~~R~~vv~~~~d~t~~~~~~l~~-~~~~a~gvli~l--P~~~~~~s~~~~n~~~~~~~~~~~~-~~le~~Ll~~~~~iPV 150 (376)
...+.||++.-.-+. .++.+. ++.++.||||+. +.+.. .+ ..| ...+..-...++.||+
T Consensus 39 ~~gkIaLv~RG~C~f--~~K~~~Aq~aGA~avII~n~~~~~~~---~~------------~~~~~m~~~~~~~~~~~IP~ 101 (126)
T cd02126 39 VKGKIAIMERGDCMF--VEKARRVQKAGAIGGIVIDNNEGSSS---DT------------APMFAMSGDGDSTDDVTIPV 101 (126)
T ss_pred cCceEEEEECCCCcH--HHHHHHHHHCCCcEEEEEECCCCccc---cc------------cceeEeecCCCCCCCCeEEE
Confidence 456778888776653 233332 556888888873 22210 00 011 1011111123578999
Q ss_pred EEeechhHHHHHHHHhccC
Q 017128 151 YFAFENDEIDAVLDDVKKN 169 (376)
Q Consensus 151 yfi~~~~~~~~i~~~~~~~ 169 (376)
.++... +-+.|++.+++.
T Consensus 102 v~I~~~-dG~~L~~~l~~~ 119 (126)
T cd02126 102 VFLFSK-EGSKLLAAIKEH 119 (126)
T ss_pred EEEEHH-HHHHHHHHHHhC
Confidence 999954 888888888654
No 99
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=24.66 E-value=2.9e+02 Score=25.52 Aligned_cols=74 Identities=11% Similarity=0.151 Sum_probs=45.8
Q ss_pred EEEEecCCCCHHH---HHHHHhccCCccEEEEecCccccccCCCCCCCchhhHHHHHHHHHHHHHh--------------
Q 017128 79 VVMIPVRELNISF---VTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLL-------------- 141 (376)
Q Consensus 79 ~vv~~~~d~t~~~---~~~l~~~~~~a~gvli~lP~~~~~~s~~~~n~~~~~~~~~~~~~~le~~L-------------- 141 (376)
++||...-||.-. +++- .++.---.|+++.++.+.++-+ .++....++.
T Consensus 3 aIVMNaNPFT~GH~yLiE~A--a~~~d~l~vFVV~eD~S~Fpf~------------~R~~LVk~G~~~L~NV~V~~~g~Y 68 (182)
T PF08218_consen 3 AIVMNANPFTLGHRYLIEQA--AKECDWLHVFVVSEDRSLFPFA------------DRYELVKEGTADLPNVTVHPGGDY 68 (182)
T ss_pred eEEEcCCCCccHHHHHHHHH--HHhCCEEEEEEEccccCcCCHH------------HHHHHHHHHhCcCCCEEEEcCCCe
Confidence 6899999998432 3332 2222223444588888877753 3566566663
Q ss_pred hcCCCCCcEEEeechhHHHHHHHHh
Q 017128 142 VHAKLPYPVYFAFENDEIDAVLDDV 166 (376)
Q Consensus 142 l~~~~~iPVyfi~~~~~~~~i~~~~ 166 (376)
+=....||-||+.+++++.+....+
T Consensus 69 iIS~aTFPsYFlK~~~~~~~~~~~l 93 (182)
T PF08218_consen 69 IISSATFPSYFLKDEDDVIKAQAEL 93 (182)
T ss_pred eeecccChhhhccchhHHHHHHHHH
Confidence 2234679999999887666654443
No 100
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=23.73 E-value=2.9e+02 Score=23.21 Aligned_cols=77 Identities=9% Similarity=0.045 Sum_probs=44.7
Q ss_pred cccceEEEEecCCCCHHHHHHHH-hccCCccEEEEecCccccccCCCCCCCchhhHHHHHHHHHHHHHhhcCCCCCcEEE
Q 017128 74 DLSRTVVMIPVRELNISFVTEYV-SRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYF 152 (376)
Q Consensus 74 ~~~R~~vv~~~~d~t~~~~~~l~-~~~~~a~gvli~lP~~~~~~s~~~~n~~~~~~~~~~~~~~le~~Ll~~~~~iPVyf 152 (376)
+.+.+.||++--.-+.. ++.. .++.++.||||+....... . .+..+...=...++.||+.+
T Consensus 32 ~~~g~I~Lv~RG~C~F~--~K~~~Aq~aGA~avII~n~~~~~~-~---------------~~~~m~~~~~~~~i~IP~v~ 93 (118)
T cd02127 32 DINGNIALIERGGCSFL--TKAINAQKAGALAVIITDVNNDSD-E---------------YYVEMIQDDSSRRADIPAAF 93 (118)
T ss_pred ccCCeEEEEECCCCCHH--HHHHHHHHCCCcEEEEEECCCCcc-c---------------cceEecCCCCCCCceEEEEE
Confidence 45678899887766532 2322 3556899999984332210 0 01000000012457899999
Q ss_pred eechhHHHHHHHHhccC
Q 017128 153 AFENDEIDAVLDDVKKN 169 (376)
Q Consensus 153 i~~~~~~~~i~~~~~~~ 169 (376)
+... +-+.|.+.+++.
T Consensus 94 Is~~-dG~~L~~~l~~g 109 (118)
T cd02127 94 LLGK-NGYMIRKTLERL 109 (118)
T ss_pred ecHH-HHHHHHHHHHcC
Confidence 9854 888888887654
No 101
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=22.22 E-value=4.5e+02 Score=21.72 Aligned_cols=73 Identities=7% Similarity=-0.067 Sum_probs=44.8
Q ss_pred cccceEEEEecCCCCHHHHHHHHh-ccCCccEEEEecCccccccCCCCCCCchhhHHHHHHHHHHHHHhhcCCCCCcEEE
Q 017128 74 DLSRTVVMIPVRELNISFVTEYVS-RKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYF 152 (376)
Q Consensus 74 ~~~R~~vv~~~~d~t~~~~~~l~~-~~~~a~gvli~lP~~~~~~s~~~~n~~~~~~~~~~~~~~le~~Ll~~~~~iPVyf 152 (376)
++..+.||++....+.. ++... ++.++.||||+......... .|. -...+..+|+.+
T Consensus 42 ~~~gkIvlv~rg~c~f~--~K~~~A~~aGA~~vIv~n~~~~~~~~---------------~~~-----~~~~~~~Ip~v~ 99 (122)
T cd02130 42 SVAGNIALIERGECPFG--DKSALAGAAGAAAAIIYNNVPAGGLS---------------GTL-----GEPSGPYVPTVG 99 (122)
T ss_pred CCCCEEEEEECCCCCHH--HHHHHHHHCCCcEEEEEECCCCcccc---------------ccc-----CCCCCCEeeEEE
Confidence 46788899998776632 22222 45689999998544211100 010 012356799999
Q ss_pred eechhHHHHHHHHhccC
Q 017128 153 AFENDEIDAVLDDVKKN 169 (376)
Q Consensus 153 i~~~~~~~~i~~~~~~~ 169 (376)
+.. ++.+.|++.+++.
T Consensus 100 Is~-~~G~~L~~~l~~g 115 (122)
T cd02130 100 ISQ-EDGKALVAALANG 115 (122)
T ss_pred ecH-HHHHHHHHHHhcC
Confidence 985 5888888887643
No 102
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=21.88 E-value=1.4e+02 Score=25.97 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=43.1
Q ss_pred EEeeecCCCCccccccccccccccccccCCCCcccceEEEEecCCCCHHHHHHHHhccCCccEEEEecCccc
Q 017128 42 RLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTEYVSRKHPLGGMLFLLPEIF 113 (376)
Q Consensus 42 Rm~qyd~~g~~~Gsr~~~~~~ea~s~~~~~~~~~~R~~vv~~~~d~t~~~~~~l~~~~~~a~gvli~lP~~~ 113 (376)
|+..|=+.|.+ ||.--.+|+.|.++- ..+-+++++-...++.+.+.++ ..-|+++.++|.
T Consensus 54 Rf~TYvI~g~~-GSg~I~lNGAAAr~~-----~~GD~vII~ay~~~~~~e~~~~------~P~vv~vd~~N~ 113 (126)
T PRK05449 54 RFETYVIAGER-GSGVICLNGAAARLV-----QVGDLVIIAAYAQMDEEEAKTH------KPKVVFVDEDNR 113 (126)
T ss_pred EEEEEEEEcCC-CCCEEEeCCHHHhcC-----CCCCEEEEEECccCCHHHHhcC------CCEEEEECCCCC
Confidence 66667666654 889999999999873 4567789999999996665442 223666666554
No 103
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=21.43 E-value=1.3e+02 Score=29.62 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=43.1
Q ss_pred ceeEEEEEeCCCCCCCcchHHHHHhhhHhhhcCeeEEEEeccccCC----------CCceEEEecCCC--CchHHHHHHH
Q 017128 270 RYNILFGLTSGGPYNYNGTHKWLRSFDQRLRESIDYAICLNSVGSW----------NNELWIHVSKPP--ENAYIKQIFE 337 (376)
Q Consensus 270 ~~~I~F~~~~gEe~g~~GS~~~ve~~~~~~~~~i~~vInLD~ig~~----------~~~L~lh~s~~p--~~~~~~~l~~ 337 (376)
+..|+++....+| +.. ...+.++.+++.|.+.++ +-+-|+|+|-|- +........+
T Consensus 86 RpDIl~ia~~~~E-----------Dp~-~i~~~aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfprhms~~~l~~Rr~ 153 (275)
T PF12683_consen 86 RPDILLIAGEPHE-----------DPE-VISSAADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPRHMSYELLARRRD 153 (275)
T ss_dssp -TTSEEEESS--S------------HH-HHHHHSSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEETTGGGSHHHHHHHH
T ss_pred CCCeEEEcCCCcC-----------CHH-HHhhccCeEeccchhhccHHHHHHHHHcCCceEEEEechhhcchHHHHHHHH
Confidence 3456666665555 211 124567788999988775 567899997544 5566677778
Q ss_pred HHHHHhhhcCceeeec
Q 017128 338 GFTNVAEELGFKVGLK 353 (376)
Q Consensus 338 ~l~~~a~~~~i~~~~v 353 (376)
.+++.|+.+|+++.-+
T Consensus 154 ~M~~~C~~lGi~fv~~ 169 (275)
T PF12683_consen 154 IMEEACKDLGIKFVEV 169 (275)
T ss_dssp HHHHHHHHCT--EEEE
T ss_pred HHHHHHHHcCCeEEEE
Confidence 8888999999888755
No 104
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=21.15 E-value=4.3e+02 Score=22.24 Aligned_cols=76 Identities=7% Similarity=-0.069 Sum_probs=45.0
Q ss_pred CcccceEEEEecCCC--CH-HHHHHHHhccCCccEEEEecCccccccCCCCCCCchhhHHHHHHHHHHHHHhhcCCCCCc
Q 017128 73 ADLSRTVVMIPVREL--NI-SFVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYP 149 (376)
Q Consensus 73 ~~~~R~~vv~~~~d~--t~-~~~~~l~~~~~~a~gvli~lP~~~~~~s~~~~n~~~~~~~~~~~~~~le~~Ll~~~~~iP 149 (376)
.+...+.|+++.... ++ +..+.. .+.+|.|||++.+..-.. . .|..+ .........+|
T Consensus 41 ~~v~GkIvlv~~g~~~~~~~~k~~~A--~~~GA~avi~~~~~~g~~-~---------------~~~~~-~~~~~~~~~IP 101 (127)
T cd04819 41 LDLEGKIAVVKRDDPDVDRKEKYAKA--VAAGAAAFVVVNTVPGVL-P---------------ATGDE-GTEDGPPSPIP 101 (127)
T ss_pred CCCCCeEEEEEcCCCchhHHHHHHHH--HHCCCEEEEEEeCCCCcC-c---------------ccccc-cccCCCCCCCC
Confidence 357788999998776 42 233332 346899999984332210 0 11100 00112246799
Q ss_pred EEEeechhHHHHHHHHhcc
Q 017128 150 VYFAFENDEIDAVLDDVKK 168 (376)
Q Consensus 150 Vyfi~~~~~~~~i~~~~~~ 168 (376)
+..+. .++.+.|++.++.
T Consensus 102 ~v~Is-~edg~~L~~~l~~ 119 (127)
T cd04819 102 AASVS-GEDGLRLARVAER 119 (127)
T ss_pred EEEEe-HHHHHHHHHHHhc
Confidence 99998 5689999888864
No 105
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=20.99 E-value=1.5e+02 Score=25.25 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=35.9
Q ss_pred EEeeecCCCCccccccccccccccccccCCCCcccceEEEEecCCCCHHHHHH
Q 017128 42 RLIQYDISGVPFGSRLASLNHHAGSLHFSPGADLSRTVVMIPVRELNISFVTE 94 (376)
Q Consensus 42 Rm~qyd~~g~~~Gsr~~~~~~ea~s~~~~~~~~~~R~~vv~~~~d~t~~~~~~ 94 (376)
|+..|=+.|.+ ||+--.+|+.|.++- ..+-+++++-...++.+....
T Consensus 53 Rf~TYvI~g~~-gSg~I~lNGAAAr~~-----~~GD~vII~sy~~~~~~e~~~ 99 (111)
T cd06919 53 RFETYVIPGER-GSGVICLNGAAARLG-----QPGDRVIIMAYALMDEEEAEG 99 (111)
T ss_pred EEEEEEEEcCC-CCCEEEeCCHHHhcC-----CCCCEEEEEECccCCHHHHhc
Confidence 66667666654 899999999999973 456678999999998655543
No 106
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=20.37 E-value=5e+02 Score=21.49 Aligned_cols=74 Identities=9% Similarity=-0.033 Sum_probs=43.6
Q ss_pred cccceEEEEecCCCCHH-HHHHHHhccCCccEEEEecCccccccCCCCCCCchhhHHHHHHHHHHHHHhhcCCCCCcEEE
Q 017128 74 DLSRTVVMIPVRELNIS-FVTEYVSRKHPLGGMLFLLPEIFRLENGGGGKDVREKEVVKNVLLELEKLLVHAKLPYPVYF 152 (376)
Q Consensus 74 ~~~R~~vv~~~~d~t~~-~~~~l~~~~~~a~gvli~lP~~~~~~s~~~~n~~~~~~~~~~~~~~le~~Ll~~~~~iPVyf 152 (376)
++..+.||++...-+.. .... .++.++.|+||+......... .|+ .. ......+|+.+
T Consensus 41 ~~~GkIvLv~rg~c~f~~K~~~--A~~aGA~avIi~n~~~~~~~~---------------~~~--~~--~~~~~~iP~~~ 99 (122)
T cd04816 41 DVKGAIVLVDRGGCPFADKQKV--AAARGAVAVIVVNNSDGGGTA---------------GTL--GA--PNIDLKVPVGV 99 (122)
T ss_pred CcCCeEEEEECCCCCHHHHHHH--HHHCCCcEEEEEeCCCCcccc---------------ccc--cC--CCCCCeeeEEE
Confidence 45678888887664422 2222 245688899998544321100 011 00 01456799999
Q ss_pred eechhHHHHHHHHhccC
Q 017128 153 AFENDEIDAVLDDVKKN 169 (376)
Q Consensus 153 i~~~~~~~~i~~~~~~~ 169 (376)
+.. ++.+.|.+.+++.
T Consensus 100 Is~-~~G~~l~~~l~~g 115 (122)
T cd04816 100 ITK-AAGAALRRRLGAG 115 (122)
T ss_pred EcH-HHHHHHHHHHcCC
Confidence 985 5889998888643
No 107
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=20.15 E-value=2.1e+02 Score=27.49 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=27.2
Q ss_pred ccCCccEEEEecCccccccCCCCCCC--chhhHHHHHHHHHHHHHhhcCCCCCcEEEee
Q 017128 98 RKHPLGGMLFLLPEIFRLENGGGGKD--VREKEVVKNVLLELEKLLVHAKLPYPVYFAF 154 (376)
Q Consensus 98 ~~~~a~gvli~lP~~~~~~s~~~~n~--~~~~~~~~~~~~~le~~Ll~~~~~iPVyfi~ 154 (376)
.+++++|||+.++-..-. +.+.... ....+..++.+.++. -.-.+.+|||.+.
T Consensus 22 ~r~PlnGvil~vs~~~Ll-~~~~~~r~l~~~a~~lR~rL~el~---~~lg~~~PVYvv~ 76 (266)
T PF14331_consen 22 PRQPLNGVILTVSVDDLL-NADEAERELEALARALRQRLEELQ---RTLGVRLPVYVVF 76 (266)
T ss_pred CCCCCCEEEEEEEHHHHh-cCChhhhHHHHHHHHHHHHHHHHH---HHhCCCCCeEeee
Confidence 346899999987744321 1111000 001111233333333 4457899999976
Done!