Query 017130
Match_columns 376
No_of_seqs 180 out of 1124
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017130.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017130hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0224 AtpG F0F1-type ATP syn 100.0 2E-86 4.3E-91 636.3 32.8 286 54-373 1-287 (287)
2 PRK13427 F0F1 ATP synthase sub 100.0 8.3E-82 1.8E-86 611.4 37.1 288 50-373 1-289 (289)
3 PRK14111 F0F1 ATP synthase sub 100.0 2.3E-81 5E-86 608.7 37.3 288 50-373 1-289 (290)
4 PRK13426 F0F1 ATP synthase sub 100.0 1.5E-80 3.3E-85 603.2 36.4 289 50-371 1-290 (291)
5 PRK13423 F0F1 ATP synthase sub 100.0 2.4E-80 5.3E-85 601.0 37.2 287 50-373 1-287 (288)
6 PRK13425 F0F1 ATP synthase sub 100.0 2.2E-80 4.8E-85 601.9 36.9 287 50-374 1-291 (291)
7 PRK13424 F0F1 ATP synthase sub 100.0 6.4E-80 1.4E-84 598.9 37.4 289 50-373 1-290 (291)
8 PRK13422 F0F1 ATP synthase sub 100.0 6E-80 1.3E-84 600.8 36.3 295 50-372 1-298 (298)
9 PF00231 ATP-synt: ATP synthas 100.0 2.9E-80 6.2E-85 601.0 31.3 289 51-372 1-290 (290)
10 PRK14110 F0F1 ATP synthase sub 100.0 3.8E-79 8.2E-84 593.4 36.6 286 52-373 5-291 (291)
11 TIGR01146 ATPsyn_F1gamma ATP s 100.0 2.6E-78 5.7E-83 586.6 36.9 287 50-372 1-287 (287)
12 PRK05621 F0F1 ATP synthase sub 100.0 4.2E-78 9.1E-83 584.4 36.5 284 50-372 1-284 (284)
13 TIGR03323 alt_F1F0_F1_gam alte 100.0 1E-75 2.2E-80 567.8 33.6 280 56-372 1-285 (285)
14 KOG1531 F0F1-type ATP synthase 100.0 8.4E-73 1.8E-77 528.3 24.8 275 50-373 28-304 (304)
15 PF00700 Flagellin_C: Bacteria 77.8 18 0.0004 28.2 8.2 53 319-371 12-64 (86)
16 PF08967 DUF1884: Domain of un 61.0 17 0.00038 29.1 4.5 36 144-179 8-43 (85)
17 KOG3287 Membrane trafficking p 42.6 51 0.0011 31.2 5.1 44 48-93 150-193 (236)
18 PF03598 CdhC: CO dehydrogenas 35.1 19 0.0004 37.0 1.2 23 130-152 201-224 (411)
19 PF10138 vWA-TerF-like: vWA fo 34.9 2.1E+02 0.0046 26.7 8.0 98 92-209 83-185 (200)
20 PRK09529 bifunctional acetyl-C 34.1 68 0.0015 35.2 5.2 24 129-152 500-524 (711)
21 smart00216 VWD von Willebrand 34.0 14 0.00031 32.1 0.1 12 135-146 142-153 (162)
22 PRK04456 acetyl-CoA decarbonyl 32.6 24 0.00052 36.6 1.5 24 129-152 202-226 (463)
23 TIGR00316 cdhC CO dehydrogenas 30.9 27 0.00058 36.2 1.5 24 129-152 199-223 (458)
24 PF10498 IFT57: Intra-flagella 30.2 2.6E+02 0.0055 28.5 8.4 57 306-369 261-317 (359)
25 PF00094 VWD: von Willebrand f 28.7 22 0.00048 30.2 0.5 12 135-146 138-149 (159)
26 PRK05752 uroporphyrinogen-III 27.8 95 0.0021 29.3 4.7 48 126-182 55-102 (255)
27 PF02698 DUF218: DUF218 domain 26.8 3E+02 0.0066 23.4 7.4 73 148-228 27-110 (155)
28 PF11629 Mst1_SARAH: C termina 26.6 1.1E+02 0.0024 22.2 3.6 32 322-356 10-41 (49)
29 PRK08883 ribulose-phosphate 3- 26.5 1.5E+02 0.0033 27.7 5.7 46 128-173 131-177 (220)
30 COG1344 FlgL Flagellin and rel 26.3 1.6E+02 0.0034 29.6 6.1 47 320-366 286-332 (360)
31 COG1692 Calcineurin-like phosp 25.2 25 0.00054 34.0 0.1 22 125-149 189-210 (266)
32 PF10960 DUF2762: Protein of u 24.1 3.5E+02 0.0075 21.0 9.2 66 298-365 3-68 (71)
33 PRK08073 flgL flagellar hook-a 23.7 1.9E+02 0.0041 28.0 6.0 50 319-368 215-264 (287)
34 PRK12803 flagellin; Provisiona 23.1 2.8E+02 0.0061 27.8 7.2 50 318-367 259-308 (335)
35 PF14156 AbbA_antirepres: Anti 22.8 3.4E+02 0.0074 20.5 6.5 37 320-356 25-63 (63)
36 PF03847 TFIID_20kDa: Transcri 22.3 1.4E+02 0.0031 22.8 3.8 32 287-318 12-43 (68)
37 PF02870 Methyltransf_1N: 6-O- 22.3 39 0.00085 25.7 0.7 12 129-140 14-25 (77)
38 COG1587 HemD Uroporphyrinogen- 21.6 48 0.001 31.3 1.3 49 127-183 51-99 (248)
39 PF07341 DUF1473: Protein of u 21.1 5.2E+02 0.011 23.0 7.4 53 54-108 37-89 (163)
40 PRK12807 flagellin; Provisiona 20.6 2.9E+02 0.0063 26.8 6.6 50 319-368 212-261 (287)
41 PRK09189 uroporphyrinogen-III 20.5 1.3E+02 0.0029 27.9 4.1 46 128-183 50-95 (240)
42 PRK07192 flgL flagellar hook-a 20.5 2.3E+02 0.005 27.5 5.9 49 320-368 234-282 (305)
43 PRK12687 flagellin; Reviewed 20.3 2.8E+02 0.0062 27.4 6.5 48 320-367 237-284 (311)
No 1
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=2e-86 Score=636.27 Aligned_cols=286 Identities=43% Similarity=0.642 Sum_probs=262.4
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCCcC-CCCceEEEEEE
Q 017130 54 RELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNI-RPVKKVAIVII 132 (376)
Q Consensus 54 keIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~-~~~k~~~~IVi 132 (376)
++||+||+||++|+|||+||+|||+||+||+|+++.+.+||++++.+++.++... ..+.+||++.. ++++++++|||
T Consensus 1 keik~kI~Svk~t~KITkAM~mVaasKl~kaq~~~~a~~pY~e~i~~vl~~l~~~--~~~~~~p~~~~~~e~kr~~~Ivi 78 (287)
T COG0224 1 KEIRRKIKSVKNTQKITKAMEMVAASKLRKAQERAEAARPYAEKIRKVLGHLASA--NLELDHPLLKPTREVKRVLYIVI 78 (287)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhc--ccccCCcccccccCCCceEEEEE
Confidence 5899999999999999999999999999999999999999999999999999875 12457898776 78999999999
Q ss_pred eCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCCceeeEeecCCCCCCHHHHHHHHHHHHhhhh
Q 017130 133 TGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFV 212 (376)
Q Consensus 133 tSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~l~~~~~ 212 (376)
|||||||||||+||+|.+...++++..+|.++.+++||+||.+||++++...+..+.++++.|+++.+..|++.+++.|.
T Consensus 79 TSDrGLcG~~Nsni~k~~~~~i~~~~~~~~~~~li~iG~Kg~~~f~~~~~~i~~~~~~l~~~p~~~~~~~i~~~~~~~~~ 158 (287)
T COG0224 79 TSDRGLCGGFNSNIFKKVENLIKELKNKGKEVKLILIGKKGIDFFKKRGYNILESFTGLGDNPSFEEAIQIADKILDAFL 158 (287)
T ss_pred ecCcchhhhhhHHHHHHHHHHHHhhhccCCceEEEEEchHHHHHHHhcCcchhhHhhccccCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999899999999999999999887777777888888999999999999999999
Q ss_pred cCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCCCcc
Q 017130 213 SEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPLML 292 (376)
Q Consensus 213 ~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (376)
+|++|+|+|+||+|+|+++|+|++++|||+++.+. ..+. . ++. ..+|+
T Consensus 159 ~g~~d~v~l~yn~f~n~~sq~~~~~~llP~~~~~~-----------~~~~-----------------~--~~~--~~~~e 206 (287)
T COG0224 159 EGEIDELYLVYNKFKNALSQEPTVQQLLPLDKIED-----------EAEE-----------------E--EPG--LWDYE 206 (287)
T ss_pred CCCCceEEEEecccccceeeeeeeEEEecCCcccc-----------hhhh-----------------c--ccc--cccee
Confidence 99999999999999999999999999999985220 0000 0 000 14789
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhh
Q 017130 293 FEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEAL 372 (376)
Q Consensus 293 fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsGAeAl 372 (376)
||||+++||+.|+|+|+.++||+|++||.||||+|||+||++|||||+|||++|++.|||+|||+||+||+|||+||+||
T Consensus 207 fEpd~e~il~~Ll~~Y~~~~iy~alles~asE~aaRm~AM~~ATdNA~~lI~~l~l~yNk~RQa~ITqEL~EIV~Ga~AL 286 (287)
T COG0224 207 FEPDAEEILETLLPRYLESQLYGALLESKASEHAARMTAMKNATDNAGDLIKELTLVYNKARQAAITQELIEIVGGAEAL 286 (287)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred h
Q 017130 373 T 373 (376)
Q Consensus 373 ~ 373 (376)
+
T Consensus 287 ~ 287 (287)
T COG0224 287 E 287 (287)
T ss_pred C
Confidence 5
No 2
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=8.3e-82 Score=611.41 Aligned_cols=288 Identities=35% Similarity=0.533 Sum_probs=257.6
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCCcCCC-CceEE
Q 017130 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRP-VKKVA 128 (376)
Q Consensus 50 ~a~lkeIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~-~k~~~ 128 (376)
|++|++||+||+||++|+|||+||||||+||+||||+++++.|||++++.+++.+++.... ..++|++..++ .++++
T Consensus 1 Ma~lkeik~RI~sv~st~kIT~AMkmVAasklrka~~~~~~~r~Y~~~i~~~~~~l~~~~~--~~~~p~~~~~~~~~~~~ 78 (289)
T PRK13427 1 MATPREIKKRINSVKNTRKITRTMEMVSTAKSKKATDRVNAAHPYANKIKELVSSLASLEG--VVHSPYLRRPEKIRTVA 78 (289)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhCcC--cccCCCcccCCccCceE
Confidence 4899999999999999999999999999999999999999999999999999999886421 22478766554 36688
Q ss_pred EEEEeCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCCceeeEeecCCCCCCHHHHHHHHHHHH
Q 017130 129 IVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVF 208 (376)
Q Consensus 129 ~IVitSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~l~ 208 (376)
+||||||||||||||++|+|.+++.++++...|+++.+++||+||.+||++++......+.++++.|+++++..|++.++
T Consensus 79 ~ivitSDrGLcG~fN~~v~k~~~~~i~~~~~~~~~~~~~~vG~kg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 158 (289)
T PRK13427 79 LLIITANRGLCGGFNSNLNRMAKARIAELKKKGVNVELHIVGKKGISFFKFAGEKAEKTYTHIDDKSGYKEAEELANLFM 158 (289)
T ss_pred EEEEeCCCCccccccHHHHHHHHHHHHHHHhCCCcEEEEEEeHHHHHHHHHcCCCceeeecccCCccCHHHHHHHHHHHH
Confidence 99999999999999999999999999887766778899999999999999887666666667778899999999999999
Q ss_pred hhhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCC
Q 017130 209 SLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELS 288 (376)
Q Consensus 209 ~~~~~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (376)
+.|.+|++|+|+|+||+|+|.++|+|.+++|||+++... .+ .... .
T Consensus 159 ~~~~~~~~d~v~viy~~f~s~~~q~~~~~~llP~~~~~~-------------~~--------------------~~~~-~ 204 (289)
T PRK13427 159 ERFANESVDAVEIASTVYYSAASQKPETTRVLPLEPPTA-------------AA--------------------EGSV-Q 204 (289)
T ss_pred HHHHcCCCCEEEEEecccccceecceeeEEeeCCCcccc-------------cc--------------------cccC-C
Confidence 999999999999999999999999999999999963110 00 0001 1
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 017130 289 PLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAG 368 (376)
Q Consensus 289 ~~~~fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsG 368 (376)
+.|+|||+++++|+.|+|.||++.||+|++||+||||+|||+||++|||||+||+++|+++|||+||++||+||+|||+|
T Consensus 205 ~~~~~ep~~~~vl~~l~~~yl~~~ly~alles~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~EL~EIv~G 284 (289)
T PRK13427 205 DDVVYEPSPEAILESLLPLVVKTAFLKAILEANASEQIARRIAMKSATDAASEMIKLLTRGYNRVRQAKITQEISEIVGG 284 (289)
T ss_pred CceEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhh
Q 017130 369 AEALT 373 (376)
Q Consensus 369 AeAl~ 373 (376)
|+||+
T Consensus 285 aeal~ 289 (289)
T PRK13427 285 ADALN 289 (289)
T ss_pred HhhcC
Confidence 99984
No 3
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=2.3e-81 Score=608.67 Aligned_cols=288 Identities=33% Similarity=0.525 Sum_probs=258.0
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCCcCCC-CceEE
Q 017130 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRP-VKKVA 128 (376)
Q Consensus 50 ~a~lkeIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~-~k~~~ 128 (376)
|++|++||+||+||++|+|||+||||||++|+||+|+++.+.+||++++.+++.+++......+..+|++..++ .++++
T Consensus 1 Ma~lkeik~RI~Sv~s~~kITkAMkmvAasklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 80 (290)
T PRK14111 1 MPSTREIRRRIRSVKNTAQITRAMEMVSASKMRRAQRNVLATRPYADRIRDVMGDLTARTVGAARVGPLLEKRPTVKRVA 80 (290)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcccCccccCcccccCccccceE
Confidence 48999999999999999999999999999999999999999999999999999999864321112367776665 57788
Q ss_pred EEEEeCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCCceeeEeecCCCCCCHHHHHHHHHHHH
Q 017130 129 IVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVF 208 (376)
Q Consensus 129 ~IVitSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~l~ 208 (376)
|||||||||||||||++|+|.+.+.++++...|+++.+++||+||.+||+++|......+.+.++.|+++++..|+++++
T Consensus 81 ~IvitSDrGLCG~fN~~l~k~~~~~i~~~~~~~~~~~l~~vG~Kg~~~l~~~~~~i~~~~~~~~~~p~~~~~~~i~~~~~ 160 (290)
T PRK14111 81 LILVTPDRGLAGSLNANVLRRAIRFITDERSMGRTVDVIAIGRKGRDFMVRTGQALVAEFTRLGDAPKLEAILPVATSAI 160 (290)
T ss_pred EEEEeCCCCccccccHHHHHHHHHHHHHHHhCCCceEEEEEehHHHHHHHHcCCCceeeeecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999887666777889999999999999888665556666778899999999999999
Q ss_pred hhhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCC
Q 017130 209 SLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELS 288 (376)
Q Consensus 209 ~~~~~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (376)
+.|.+|++|+|+|+||+|+|.++|+|.+++|||+++.. ++ . . ..
T Consensus 161 ~~~~~~~~d~v~iiy~~f~s~~~~~~~~~~llP~~~~~--------------~~--------------------~-~-~~ 204 (290)
T PRK14111 161 NGFQSGKYDEVYVLYSEFINTLVQRPTIKQLLPIEPPE--------------IS--------------------T-T-TV 204 (290)
T ss_pred HHHHcCCCCEEEEEecccccceeeeeeEEEecCCCccc--------------cc--------------------c-c-cc
Confidence 99999999999999999999999999999999996411 00 0 0 01
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 017130 289 PLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAG 368 (376)
Q Consensus 289 ~~~~fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsG 368 (376)
+.|+|||+++++|+.|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||+|
T Consensus 205 ~~~~~ep~~~~il~~L~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIVsG 284 (290)
T PRK14111 205 VDYTYEPSPEEVLRALLPRFVEVQLYQAVLESIASEHSARMVAMRNATDNAKELVRDLTLTYNKARQAAITKEVSEIASG 284 (290)
T ss_pred cceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhh
Q 017130 369 AEALT 373 (376)
Q Consensus 369 AeAl~ 373 (376)
|+||+
T Consensus 285 aeal~ 289 (290)
T PRK14111 285 AAALG 289 (290)
T ss_pred HHHhc
Confidence 99985
No 4
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=1.5e-80 Score=603.19 Aligned_cols=289 Identities=36% Similarity=0.499 Sum_probs=255.6
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCCcCCCCceEEE
Q 017130 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAI 129 (376)
Q Consensus 50 ~a~lkeIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~~ 129 (376)
|++|++||+||+||++|+|||+||||||++|+||+|+++.+.+||++++.+++.+++...+ ..++|++..++.+++++
T Consensus 1 Ma~l~~ik~RI~sv~~t~kIt~AMkmVAasklrka~~~~~~~~~Y~~~l~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~ 78 (291)
T PRK13426 1 MASLKEIKTRIASVQSTRKITSAMKMVASAKLHKAQGAIENMLPYQRKLNHILTNFLSADL--DVESPFTVERPVKRVAI 78 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccC--CCCCcccccCCcceEEE
Confidence 5899999999999999999999999999999999999999999999999999999886432 23578776666677889
Q ss_pred EEEeCCCCCCccchHHHHHHHHHHHHHHhhCC-CceEEEEeehhhHHHHhhcCCceeeEeecCCCCCCHHHHHHHHHHHH
Q 017130 130 VIITGDRGLCGGFNKAVIKKAENRMVELKDMG-LDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVF 208 (376)
Q Consensus 130 IVitSDrGLCG~fN~~Iik~~~~~i~~~~~~g-~~~~li~VG~Kg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~l~ 208 (376)
||||||||||||||++|+|.++++++++...| .++.+++||+||.++|+++|...+..+...++.|+++++..|++.++
T Consensus 79 IvitSDrGLcG~fN~~v~~~~~~~~~~~~~~~~~~~~~~~vG~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~ 158 (291)
T PRK13426 79 VVFSSNTSLCGGFNANIIKLLLQTIGEYRTLGQDNILIYPVGKKIEEAVKKLGFKVQGDYQTLADKPSYEEAAALAMRLM 158 (291)
T ss_pred EEEeCCCcccchhhHHHHHHHHHHHHHHhhcCCCceEEEEeeHHHHHHHHHcCCCceEeecccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999998765444 57789999999999999887666666666678899999999999999
Q ss_pred hhhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCC
Q 017130 209 SLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELS 288 (376)
Q Consensus 209 ~~~~~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (376)
+.|..|++|+|+|+||+|+|+++|.|.+++|||+++... +. . +......
T Consensus 159 ~~~~~~~~d~v~iiy~~f~s~~~q~~~~~~llPi~~~~~---------~~--~--------------------~~~~~~~ 207 (291)
T PRK13426 159 ELFLEGEIDKVELIYHHFKSMGVQVLTRETYLPIDLSQE---------KN--A--------------------EHAGGVA 207 (291)
T ss_pred HHHhcCCCCEEEEEecccccccccceeEEEecCCCcccc---------cc--c--------------------ccccCCC
Confidence 999999999999999999999999999999999964110 00 0 0000112
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 017130 289 PLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAG 368 (376)
Q Consensus 289 ~~~~fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsG 368 (376)
+.|+|||+++++|+.|+|.||++.||+||+||+||||+|||+||++|||||+||+++|+++|||+||++||+||+|||||
T Consensus 208 ~~~~~Ep~~e~il~~L~~~yl~~~ly~alles~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIvsG 287 (291)
T PRK13426 208 NDYIIEPSADTVLNDLIPKLLSLKIYTALLDSNASEHAARMVAMQIATDNANELLQELTLQYNKSRQQAITNELLDIVGG 287 (291)
T ss_pred CceEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 24789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 017130 369 AEA 371 (376)
Q Consensus 369 AeA 371 (376)
|+|
T Consensus 288 aea 290 (291)
T PRK13426 288 SMA 290 (291)
T ss_pred hhc
Confidence 997
No 5
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=2.4e-80 Score=600.98 Aligned_cols=287 Identities=39% Similarity=0.557 Sum_probs=256.6
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCCcCCCCceEEE
Q 017130 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAI 129 (376)
Q Consensus 50 ~a~lkeIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~~ 129 (376)
|++|++||+||+||++|+|||+||||||++|+||+|+++.+.|||++++.+++.+++...+. ..+|++..++.++++|
T Consensus 1 M~~l~~ik~RI~Sv~~t~kItkAMkmvAaaklrka~~~~~~~~~y~~~i~~~~~~l~~~~~~--~~~p~~~~~~~~~~~~ 78 (288)
T PRK13423 1 MASLKDIKKRIVSVKNTRQITKAMKMVSAAKLRRAQENVVAARPYAAKLGEVLGSLAARAGE--DAHPLLVPREVKKALL 78 (288)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccCc--ccCcccccCCCceEEE
Confidence 58999999999999999999999999999999999999999999999999999999864321 2367766665677889
Q ss_pred EEEeCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCCceeeEeecCCCCCCHHHHHHHHHHHHh
Q 017130 130 VIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFS 209 (376)
Q Consensus 130 IVitSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~l~~ 209 (376)
|||||||||||+||++|+|.+.+.++++...|.++.+++||+||.++|++++......+.+..+.|+++.+..|++++++
T Consensus 79 IvitSDrGLCG~fN~~i~k~~~~~i~~~~~~~~~~~l~~vG~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~ 158 (288)
T PRK13423 79 VVVTSDRGLCGGFNSNLCKAAERFLKENKDEFEEISLTTVGRKGREFLKNRGLIIRKNYGGVVANLTYETAALLAQELIE 158 (288)
T ss_pred EEEeCCCCCcchhhHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHHcCCCceeeecCcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998876667778899999999999998775544555556678899999999999999
Q ss_pred hhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCC
Q 017130 210 LFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSP 289 (376)
Q Consensus 210 ~~~~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (376)
.|..+++|+|+|+||+|+|+++|+|.+++|||+++.+. . .... .+
T Consensus 159 ~~~~~~~d~v~iiy~~f~n~~~q~~~~~~llP~~~~~~--------------~--------------------~~~~-~~ 203 (288)
T PRK13423 159 GYLAGEYDEVYLVYNEFKSVMSQDITVQQLLPIDPPEA--------------A--------------------DDEY-LP 203 (288)
T ss_pred HHhcCCCCEEEEEecccccccccceeEEEecCCCcccc--------------c--------------------cccc-cc
Confidence 99999999999999999999999999999999964110 0 0000 12
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 017130 290 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 369 (376)
Q Consensus 290 ~~~fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsGA 369 (376)
.|.|||+++++|+.|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||+||
T Consensus 204 ~~~~ep~~~~vl~~l~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~EL~EIvsGa 283 (288)
T PRK13423 204 EYIYEPSRDALLAELLPKHVEVQIYRALLESVASEHGARMTAMDSATKNATEMIGKLTLQYNRARQAAITTELMEIVSGA 283 (288)
T ss_pred ceeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh
Q 017130 370 EALT 373 (376)
Q Consensus 370 eAl~ 373 (376)
+|++
T Consensus 284 eal~ 287 (288)
T PRK13423 284 EALK 287 (288)
T ss_pred HHhc
Confidence 9985
No 6
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=2.2e-80 Score=601.94 Aligned_cols=287 Identities=38% Similarity=0.555 Sum_probs=255.1
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCCcCCC-CceEE
Q 017130 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRP-VKKVA 128 (376)
Q Consensus 50 ~a~lkeIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~-~k~~~ 128 (376)
|++|++||+||+||++|+|||+||||||++|+||+|+++.+.+||++++.+++.+++.... ...+|++..++ .++++
T Consensus 1 M~~l~~ik~RI~sv~~t~kIT~AMkmVA~aklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~ 78 (291)
T PRK13425 1 MPTLKDIRVRIKGVKSTQQVTKAMKMVAAAKLRRAQERAIMARPYAAKLKEMLGSLSAKVD--TSLNPLLSPRSEVNKVL 78 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccC--cccCccccccccCccEE
Confidence 5899999999999999999999999999999999999999999999999999999976432 12367766554 46788
Q ss_pred EEEEeCCCCCCccchHHHHHHHHHHHHHHhh---CCCceEEEEeehhhHHHHhhcCCceeeEeecCCCCCCHHHHHHHHH
Q 017130 129 IVIITGDRGLCGGFNKAVIKKAENRMVELKD---MGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIAD 205 (376)
Q Consensus 129 ~IVitSDrGLCG~fN~~Iik~~~~~i~~~~~---~g~~~~li~VG~Kg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~ 205 (376)
|||||||||||||||++|+|.+.+.++++.. .+.++.+++||+||.++|+++|...+..+.+..+.|+++.+..|++
T Consensus 79 ~ivitSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~~~~l~~iG~Kg~~~~~~~~~~i~~~~~~~~~~~~~~~a~~i~~ 158 (291)
T PRK13425 79 VILITSDRGLCGAFNTNIIKLAQKVIHEDYAALHAKGGVSMICAGTRGFDFFRKRGYNIVKGYPGVFQNLDFSVAKEIAE 158 (291)
T ss_pred EEEEeCCCcccccchHHHHHHHHHHHHHhhhhhccCCceEEEEeeHHHHHHHHHcCCCceeeecCcCCCCCHHHHHHHHH
Confidence 9999999999999999999999999876543 3557789999999999999887666666666778889999999999
Q ss_pred HHHhhhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccC
Q 017130 206 NVFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKG 285 (376)
Q Consensus 206 ~l~~~~~~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (376)
.+++.|.+|++|+|+|+||+|+|.++|+|.+++|||+++.+. .+ ..
T Consensus 159 ~~~~~~~~~~~d~v~viy~~f~~~~~~~~~~~~llP~~~~~~-------------~~--------------------~~- 204 (291)
T PRK13425 159 TASGMYLRGEVDKVVVVYNEFKSVLAPNLKSEVLLPITPEKP-------------GA--------------------EG- 204 (291)
T ss_pred HHHHHHHcCCCCEEEEEeccceeceeeeEEEEEeeCCCcccc-------------cc--------------------cc-
Confidence 999999999999999999999999999999999999964110 00 00
Q ss_pred CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 017130 286 ELSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEI 365 (376)
Q Consensus 286 ~~~~~~~fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EI 365 (376)
...|+|||+++++|+.|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+||
T Consensus 205 --~~~~~~eP~~~~il~~L~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~Ei~EI 282 (291)
T PRK13425 205 --GSDYIYEPSPAAIIDELVPKHLNTQVWRMMLESNAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEI 282 (291)
T ss_pred --CCCeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 013789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhhc
Q 017130 366 VAGAEALTQ 374 (376)
Q Consensus 366 VsGAeAl~~ 374 (376)
|+||+|+++
T Consensus 283 v~Ga~al~~ 291 (291)
T PRK13425 283 VAGADALQG 291 (291)
T ss_pred HHHHHHhcC
Confidence 999999864
No 7
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=6.4e-80 Score=598.88 Aligned_cols=289 Identities=34% Similarity=0.523 Sum_probs=257.1
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCCcCCC-CceEE
Q 017130 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRP-VKKVA 128 (376)
Q Consensus 50 ~a~lkeIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~-~k~~~ 128 (376)
|++|++||+||+||++|+|||+||||||++|+||+|+++.+.+||++++.+++.+++.... ...+|++..++ .++++
T Consensus 1 M~~l~eik~RI~sv~~~~kIt~AMkmVAasklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~ 78 (291)
T PRK13424 1 MPSLKDVKVKIAGVKKTKQITKAMNMVASAKLRGAQQRIERFRPYAEKFYDMLGDLASRAD--SSAHPLLEVREEIKTCG 78 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccC--cccCcccccccccCcEE
Confidence 4899999999999999999999999999999999999999999999999999999986432 12367766665 36678
Q ss_pred EEEEeCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCCceeeEeecCCCCCCHHHHHHHHHHHH
Q 017130 129 IVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVF 208 (376)
Q Consensus 129 ~IVitSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~l~ 208 (376)
|||||||||||||||++|+|.++++++++...|+++.+++||+||.+||+++|......+.+..+.|+|+.+..|+++++
T Consensus 79 ~IvitSDrGLCG~fN~~v~k~~~~~i~~~~~~~~~~~l~~vG~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 158 (291)
T PRK13424 79 IVLITSDRGLCGSFNANLINAALKLAKQKTAEGKTVKFYCVGKKGRDAIRKTDFEIVTAYADQMTSFDFQLANSIGLEVI 158 (291)
T ss_pred EEEEeCCCcccccchHHHHHHHHHHHHHHhhCCCceEEEEeeHHHHHHHHHcCCCeeEeeccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999887666778899999999999999887655656666778899999999999999
Q ss_pred hhhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCC
Q 017130 209 SLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELS 288 (376)
Q Consensus 209 ~~~~~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (376)
+.|.++++|+|+|+||+|+|+++|.|.+++|||+++.+. . . ..+.. .
T Consensus 159 ~~~~~~~~d~v~viy~~f~s~~~~~~~~~~llP~~~~~~-----------~-~------------------~~~~~---~ 205 (291)
T PRK13424 159 DGYLTGELDEVVLVYGEFVSMARQLPITLQILPIAPEEA-----------E-E------------------EEAGA---S 205 (291)
T ss_pred HHHHcCCCCEEEEEeccccccccCceEEEEecCCCcccc-----------c-c------------------ccccc---c
Confidence 999999999999999999999999999999999964110 0 0 00000 1
Q ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 017130 289 PLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAG 368 (376)
Q Consensus 289 ~~~~fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsG 368 (376)
+.|+|||+++++|+.|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||+|
T Consensus 206 ~~~~~ep~~~~il~~L~~~yl~~~ly~al~es~asE~aaR~~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~Ei~EIvsG 285 (291)
T PRK13424 206 SEYIYEPSVEGLLAELLPRFIKVQIYRGLLDTSASEHAARMTAMDNATRNCDDMIGSLTLLYNKTRQASITRELMDIVGG 285 (291)
T ss_pred cCeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhh
Q 017130 369 AEALT 373 (376)
Q Consensus 369 AeAl~ 373 (376)
|+||+
T Consensus 286 a~al~ 290 (291)
T PRK13424 286 AEALK 290 (291)
T ss_pred HHHhc
Confidence 99985
No 8
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=6e-80 Score=600.75 Aligned_cols=295 Identities=31% Similarity=0.437 Sum_probs=251.9
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCCcCCCCceEEE
Q 017130 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAI 129 (376)
Q Consensus 50 ~a~lkeIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~~ 129 (376)
|+++++||+||+||++|+|||+||||||+||+||||+++.+.|||++.+.+++..+.... .+..+|++..++.+++++
T Consensus 1 Ma~l~eik~RI~Sv~~t~kIT~AMkmVAasKlrka~~~~~~~~~y~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~ 78 (298)
T PRK13422 1 MSNAREIRSKVQSVKNTQKITGAMELVAASKMRGAIVKMNNVRPYVESANTIIKNVTAAS--IDYPNPYLFDRDVKRVGY 78 (298)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcC--CccCCcccccCCCceEEE
Confidence 489999999999999999999999999999999999999999999999999999987531 123367776666677889
Q ss_pred EEEeCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhh-cCCceeeE--eecCCCCCCHHHHHHHHHH
Q 017130 130 VIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRH-RSNVSVIR--CIEGEGFYTVKEAQTIADN 206 (376)
Q Consensus 130 IVitSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~-~~~~~v~~--~~~~~~~p~~~~a~~I~~~ 206 (376)
||||||||||||||++|+|.+.+.++++.+.|.++.+++||+||.+||++ ++...+.. +...++.|+++++..|+++
T Consensus 79 IvitSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~iG~K~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 158 (298)
T PRK13422 79 IVTSTDRGLCGGLNINLFKHVLKEIKNNIEDRVGVDVCVIGSKAENFFAKLKDVNIVATAHYNDKDKEGSIRAIGGAVKV 158 (298)
T ss_pred EEEeCCcccccchhHHHHHHHHHHHHHHHhCCCceEEEEEChhHHHHHHHhcCCCceeeeeeccCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999998876667788899999999999985 44333444 2233368899999999999
Q ss_pred HHhhhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCC
Q 017130 207 VFSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGE 286 (376)
Q Consensus 207 l~~~~~~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (376)
+++.|.++++|+|+|+||+|+|.++|+|.+++|||++... +..+.+ +... ....
T Consensus 159 ~~~~~~~~~~d~v~iiy~~f~s~~~q~~~~~~llP~~~~~----------~~~~~~------------~~~~----~~~~ 212 (298)
T PRK13422 159 MLDKFTAGEIDRLYMSSNQFVSTIKQRPRLQTLLPIQDIF----------SAEEIK------------ANKE----KATK 212 (298)
T ss_pred HHHHHHcCCCCEEEEEeccccCCcccceEEEEeeCCCccc----------chhhhc------------cccc----cccc
Confidence 9999999999999999999999999999999999995310 000000 0000 0000
Q ss_pred CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 017130 287 LSPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIV 366 (376)
Q Consensus 287 ~~~~~~fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIV 366 (376)
....|.|||+++++|++|+|.||++.||+||+||+||||+|||+||++|||||+||+++|+++|||+||++||+||+|||
T Consensus 213 ~~~~~~~ep~~~~il~~L~~~yl~~~ly~al~eS~aSE~aaRm~AM~~At~Na~eli~~L~l~yNr~RQa~IT~Ei~EIv 292 (298)
T PRK13422 213 GHWDYIYERDIEEVLNALCIRYIEAQVRGAILENAACEQAARMMAMKNATDNASDIIDQLKLDYNKVRQAMITQELAEIC 292 (298)
T ss_pred CCCCeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01137899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhh
Q 017130 367 AGAEAL 372 (376)
Q Consensus 367 sGAeAl 372 (376)
+||+|.
T Consensus 293 sGaeA~ 298 (298)
T PRK13422 293 SGAAAV 298 (298)
T ss_pred hhhhcC
Confidence 999984
No 9
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=100.00 E-value=2.9e-80 Score=600.97 Aligned_cols=289 Identities=44% Similarity=0.652 Sum_probs=249.2
Q ss_pred ccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCCcCC-CCceEEE
Q 017130 51 CGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIR-PVKKVAI 129 (376)
Q Consensus 51 a~lkeIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~-~~k~~~~ 129 (376)
|+|++||+||+||++|+|||+||||||++|+||+++++.+.+||++++.+++.+++.... +.++|++..+ +.++++|
T Consensus 1 A~lk~ik~RI~sv~~i~kIt~aMkmvA~sklrk~~~~~~~~~~y~~~i~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~ 78 (290)
T PF00231_consen 1 ASLKEIKRRIKSVKSIQKITKAMKMVAASKLRKAQKALEAARPYAETIEEILADLLSSIS--DYQHPLLKKREEVKKVLL 78 (290)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHT--TT--SSGS-----SCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc--cccCcccccccccceEEE
Confidence 689999999999999999999999999999999999999999999999999999987642 3568988887 7889999
Q ss_pred EEEeCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCCceeeEeecCCCCCCHHHHHHHHHHHHh
Q 017130 130 VIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFS 209 (376)
Q Consensus 130 IVitSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~l~~ 209 (376)
|||||||||||+||++|+|++.+++++....|+++.+|+||+||.+||+++|......+.+.++.|+++++..|++.+++
T Consensus 79 ivitSDrGLCG~fN~~v~k~~~~~~~~~~~~g~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~ 158 (290)
T PF00231_consen 79 IVITSDRGLCGGFNSNVIKAAESFIKEKDDQGKEVKLIVIGKKGRDFLKKRGYNIIASFNGISSDPTFEEASEIAEKLID 158 (290)
T ss_dssp EEE--STSSSTTHHHHHHHHHHHHHCCSCTTTSEEEEEEESHHHHHHHHCSSTTEEEEEESBTSS--HHHHHHHHHHHHH
T ss_pred EEEecCccccccccHHHHHHHHHHHhhccccCCceEEEEeCcchhhhhhhCCCcceeeeecccchhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999887778889999999999999999887666667777789999999999999999
Q ss_pred hhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCC
Q 017130 210 LFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSP 289 (376)
Q Consensus 210 ~~~~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (376)
.|.+|++|+|+|+||+|+|.++|+|.+++|||+.... +..... +.....
T Consensus 159 ~~~~~~~d~v~viy~~~~~~~~~~~~~~~llP~~~~~----------~~~~~~---------------------~~~~~~ 207 (290)
T PF00231_consen 159 LYESGEIDEVYVIYNKFKSAVSQEPVVEQLLPLEKDI----------EQSSEE---------------------KWPKKS 207 (290)
T ss_dssp HCCCCS-SEEEEEEEEECSTTEEEEEEEEESSS---------------HHHHH---------------------TTTTGG
T ss_pred hhhcCCCCeEEEEEEEeccceeeeEEeeehhhhhccc----------hhhccc---------------------cccCCC
Confidence 9999999999999999999999999999999984310 000000 011133
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 017130 290 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 369 (376)
Q Consensus 290 ~~~fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsGA 369 (376)
.+.|||+++++|+.|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+||||||
T Consensus 208 ~~~~ep~~~~il~~L~~~yl~~~l~~al~eS~asE~~aR~~AM~~At~Na~e~i~~L~~~yNr~RQa~IT~Ei~EIvsGa 287 (290)
T PF00231_consen 208 PYEFEPSPEEILDDLLPQYLFAQLYGALLESKASENAARMIAMENATDNAEELIDKLTLEYNRARQAEITQEIIEIVSGA 287 (290)
T ss_dssp GCCCSSTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh
Q 017130 370 EAL 372 (376)
Q Consensus 370 eAl 372 (376)
+||
T Consensus 288 eAl 290 (290)
T PF00231_consen 288 EAL 290 (290)
T ss_dssp HT-
T ss_pred hcC
Confidence 997
No 10
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional
Probab=100.00 E-value=3.8e-79 Score=593.43 Aligned_cols=286 Identities=36% Similarity=0.538 Sum_probs=252.7
Q ss_pred cHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCCcCCCCceEEEEE
Q 017130 52 GLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIVI 131 (376)
Q Consensus 52 ~lkeIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~~IV 131 (376)
++++||+||+||++|+|||+||||||++|+||+|+++.+.|||++++.+++.+++.... ...+|++..++.+++++||
T Consensus 5 slkeik~RI~sv~~~~kIT~AMkmVAasklrkaq~~~~~~~~y~~~i~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~Iv 82 (291)
T PRK14110 5 SPRDIKRKIQGIKNTRRITNAMKVVSAAKLRKAQELLYASRPYSEKLYELISDLAAHID--RESHPLLERREEKNVDLVI 82 (291)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccC--CccCcccccCccceEEEEE
Confidence 68999999999999999999999999999999999999999999999999999986432 1236776666567788999
Q ss_pred EeCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCCceeeEeecCCC-CCCHHHHHHHHHHHHhh
Q 017130 132 ITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEG-FYTVKEAQTIADNVFSL 210 (376)
Q Consensus 132 itSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~~~v~~~~~~~~-~p~~~~a~~I~~~l~~~ 210 (376)
||||||||||||++|+|.++++++++...|.++.+++||+||.++|++++......+.++.+ +|+|+.+..|++.+++.
T Consensus 83 itSDrGLCG~fNs~vik~~~~~~~~~~~~~~~~~l~~iG~Kg~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~l~~~ 162 (291)
T PRK14110 83 ITADRGLAGAFNSNVIKTAERLIQEKQSEGVRVNLILIGRKGVQYFSKRGYNIIKSYEDVFRKEINFSVVKEVGGILASR 162 (291)
T ss_pred EeCCCCccccccHHHHHHHHHHHHHHHhCCCceEEEEehHHHHHHHHHcCCCceeeeccccCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999877656778899999999999999877555555555554 45999999999999999
Q ss_pred hhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCCC
Q 017130 211 FVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPL 290 (376)
Q Consensus 211 ~~~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (376)
|.+|++|+|+|+||+|+|+++|+|.+++|||+++++ .+ ..++ . ...
T Consensus 163 ~~~~~~d~v~iiy~~f~s~~~~~~~~~~llP~~~~~--------------~~-----------------~~~~--~-~~~ 208 (291)
T PRK14110 163 YIEEETDAVYLINNEMITRATYKPKVRKFLPFEVEA--------------QE-----------------KKLD--E-LSV 208 (291)
T ss_pred HHcCCCCEEEEEecccccceeeeEEEEEecCCCccc--------------cc-----------------cccC--C-CCC
Confidence 999999999999999999999999999999996411 00 0000 0 013
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHh
Q 017130 291 MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAE 370 (376)
Q Consensus 291 ~~fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsGAe 370 (376)
|+|||+++++|++|+|.||++.||+|++||++|||+|||+||++|||||+||+++|+++|||+||++||+||+|||+||+
T Consensus 209 ~~~ep~~~~vl~~L~~~yl~~~ly~al~es~aSE~aaRm~AM~~At~Na~e~i~~L~l~yNr~RQ~~IT~Ei~EIv~Gae 288 (291)
T PRK14110 209 YNIEVSEEEFLDKLLQLYLNYQLYRALVESNAAEHFARMVAMDNATRNAGELIRKWTLIFNKARQEAITTELIDIVNAAE 288 (291)
T ss_pred eEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh
Q 017130 371 ALT 373 (376)
Q Consensus 371 Al~ 373 (376)
||+
T Consensus 289 al~ 291 (291)
T PRK14110 289 AMK 291 (291)
T ss_pred hcC
Confidence 984
No 11
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP.
Probab=100.00 E-value=2.6e-78 Score=586.58 Aligned_cols=287 Identities=47% Similarity=0.718 Sum_probs=254.8
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCCcCCCCceEEE
Q 017130 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAI 129 (376)
Q Consensus 50 ~a~lkeIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~~ 129 (376)
|++|++||+||+||++|+|||+||||||++|+||+++++.+.+||++++.+++.+++.... +.++|++..++.+++++
T Consensus 1 M~~l~eik~RI~sv~~~~kIt~aMkmvA~sklrka~~~~~~~~~Y~~~i~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~ 78 (287)
T TIGR01146 1 MATLKEIRTRIKSVKNTQKITKAMKMVAASKLRRAQERAEAARPYAEKIRAVLGNLATKLL--NYDHPLLKSREVKKVGI 78 (287)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhccC--CCCCccccccccCeEEE
Confidence 4899999999999999999999999999999999999999999999999999999886432 22467666565677889
Q ss_pred EEEeCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCCceeeEeecCCCCCCHHHHHHHHHHHHh
Q 017130 130 VIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFS 209 (376)
Q Consensus 130 IVitSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~l~~ 209 (376)
|||||||||||+||++|+|.+.+.++++...+.++.+++||+||.++|+++|..+...+.+.++.|+++.+..|++.+++
T Consensus 79 ivitSDrGLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~vG~k~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~i~~ 158 (287)
T TIGR01146 79 LVITSDRGLCGGYNSNVLKRVRQRAKELKAAGKEVKLVVIGRKGKSFFKRRGDNIVLSITGLSDQPTFEEASGIADKLLD 158 (287)
T ss_pred EEEeCCCCccccccHHHHHHHHHHHHHHhccCCceEEEEeeHHHHHHHHHcCCCeeEeecccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998776556678899999999999998775555555555678899999999999999
Q ss_pred hhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCC
Q 017130 210 LFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSP 289 (376)
Q Consensus 210 ~~~~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (376)
.|.++++|+|+|+||+|+|+++|+|.+++|||++..+. ++ . + ..++
T Consensus 159 ~~~~~~~d~v~viy~~f~~~~~~~~~~~~llP~~~~~~-------------~~----------~--------~---~~~~ 204 (287)
T TIGR01146 159 AFASGEFDEVYIVYNKFVSSISQEPTVKQLLPLSEQGP-------------DE----------G--------F---KFGQ 204 (287)
T ss_pred HHHcCCCCEEEEEecccccceeeeEEEEEeeCCCcccc-------------cc----------c--------c---cCCC
Confidence 99999999999999999999999999999999964110 00 0 0 0012
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 017130 290 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 369 (376)
Q Consensus 290 ~~~fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsGA 369 (376)
.|.|||+++++|+.|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||+||
T Consensus 205 ~~~~ep~~~~vl~~l~~~yl~~~ly~a~~es~asE~aaR~~AM~~At~Na~e~i~~L~~~yNr~RQ~~IT~El~EIvsGa 284 (287)
T TIGR01146 205 DYIFEPDEEEILDDLLPRYLESQIYGALLESAASEQAARMTAMDNATDNAGDLIKKLTLSYNRARQAAITQELIEIVAGA 284 (287)
T ss_pred CeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh
Q 017130 370 EAL 372 (376)
Q Consensus 370 eAl 372 (376)
+|+
T Consensus 285 eal 287 (287)
T TIGR01146 285 SAL 287 (287)
T ss_pred hcC
Confidence 986
No 12
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=100.00 E-value=4.2e-78 Score=584.35 Aligned_cols=284 Identities=43% Similarity=0.630 Sum_probs=257.0
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCCcCCCCceEEE
Q 017130 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAI 129 (376)
Q Consensus 50 ~a~lkeIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~~ 129 (376)
|++|++||+||+||++|+|||+||||||++|+||+|+++.+.+||++++.+++.+++...+ .++|++..++.++++|
T Consensus 1 M~~l~~lk~RI~sv~~i~kIt~aMkmvA~skl~k~~~~~~~~~~y~~~i~~~~~~l~~~~~---~~~~~~~~~~~~~~~~ 77 (284)
T PRK05621 1 MASLKEIRRRIKSVKNTQKITKAMEMVAASKLRKAQERAEASRPYAEKIRKVISHLASASE---YDHPLLVEREVKRVGY 77 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhcCC---CCCcccccCCCceEEE
Confidence 5899999999999999999999999999999999999999999999999999999987542 2478776666677889
Q ss_pred EEEeCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCCceeeEeecCCCCCCHHHHHHHHHHHHh
Q 017130 130 VIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFS 209 (376)
Q Consensus 130 IVitSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~l~~ 209 (376)
|||||||||||+||++|+|.+.+.+++++..|.++.+++||+||.++|++++..+...+.+.++.|+++.+..|++.+++
T Consensus 78 ivitSd~GLCG~fN~~v~k~~~~~~~~~~~~~~~~~l~~iG~k~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~i~~~i~~ 157 (284)
T PRK05621 78 IVVTSDRGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVDFFKRRGINVVAEYTGLGDQPTFEEAIGIAKKLLD 157 (284)
T ss_pred EEEeCCCcccchhhHHHHHHHHHHHHHHHhcCCceEEEEehHHHHHHHHHcCCCceeeeeccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998876667778999999999999998876555556566678899999999999999
Q ss_pred hhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCC
Q 017130 210 LFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSP 289 (376)
Q Consensus 210 ~~~~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (376)
.|..|++|+|+|+||+|+|+++|+|.+++|||++.... . . . .++
T Consensus 158 ~~~~~~~~~i~viy~~f~~~~~~~~~~~~llP~~~~~~--------------~-----------------~--~---~~~ 201 (284)
T PRK05621 158 AYDNGEFDELYIVYNKFVNTLSQEPTVEQLLPLEKEEE--------------E-----------------E--E---TSW 201 (284)
T ss_pred HHHcCCCCEEEEEecccccceecceEEEEeCCCCcccc--------------c-----------------c--c---ccC
Confidence 99999999999999999999999999999999974110 0 0 0 012
Q ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 017130 290 LMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 369 (376)
Q Consensus 290 ~~~fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsGA 369 (376)
.|.|||+++++|+.|+|.||++.||+|++||++|||+|||+||++|||||+|++++|+++|||+||++||+||+|||+||
T Consensus 202 ~~~~ep~~~~vl~~l~~~yl~~~l~~al~es~asE~aaR~~AM~~At~Na~e~i~~L~~~~Nr~RQ~~IT~El~EIvsGa 281 (284)
T PRK05621 202 DYEYEPDAEEILDALLPRYVESQIYQALLENKASEQAARMTAMKNATDNAGDLIKKLTLVYNRARQAAITQEITEIVGGA 281 (284)
T ss_pred CeeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhh
Q 017130 370 EAL 372 (376)
Q Consensus 370 eAl 372 (376)
+|+
T Consensus 282 eal 284 (284)
T PRK05621 282 EAL 284 (284)
T ss_pred hcC
Confidence 986
No 13
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=100.00 E-value=1e-75 Score=567.81 Aligned_cols=280 Identities=23% Similarity=0.327 Sum_probs=237.1
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCC-CcCCCCceEEEEEEeC
Q 017130 56 LKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPL-TNIRPVKKVAIVIITG 134 (376)
Q Consensus 56 Ik~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl-~~~~~~k~~~~IVitS 134 (376)
||+||+||++|+|||+||||||+||+||+|+++.+.|||++++.+++.+++...+. ...+|. ...++.++++||||||
T Consensus 1 ik~RI~Sv~~t~kITkAMkmVAasklrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~IvitS 79 (285)
T TIGR03323 1 LRRKIESAADLQSVVRTMKALAAVSIRQYEDAVRALDDYYRTVELGLAVCLRRIPL-AALSPSGPNQKVSGHTGAIVFGS 79 (285)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhCCC-cccccccccccCCCcEEEEEEEC
Confidence 68999999999999999999999999999999999999999999999998864221 112344 3333356788999999
Q ss_pred CCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCCceeeEeecCCCCCCHHHHHHHHHHHHhhhh--
Q 017130 135 DRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFV-- 212 (376)
Q Consensus 135 DrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~l~~~~~-- 212 (376)
|||||||||++|+|.+.+.++.+. .++.+++||+||.++|++++......+ . +.++++++..|++++++.|.
T Consensus 80 DrGLCG~fN~~l~k~~~~~~~~~~---~~~~~~~iG~K~~~~~~~~~~~i~~~~-~--~~~~~~~~~~i~~~i~~~~~~~ 153 (285)
T TIGR03323 80 DQGLVGQFNEVILTFAAEELARLP---GEATIWAVGERVASRLEDSGLTIGELF-R--LPNSVGAITPLVSELLIEVEAR 153 (285)
T ss_pred CCcCchHhHHHHHHHHHHHHHhcc---CCeEEEEECHHHHHHHHHcCCCceEee-c--CcCCHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999987642 367899999999999998765444443 2 34578888999999999996
Q ss_pred --cCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCCCCC
Q 017130 213 --SEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGELSPL 290 (376)
Q Consensus 213 --~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (376)
.|++|+|+|+||+|+|.++|+|.+++|||++... .++. . + ..|. . +..
T Consensus 154 ~~~~~~d~v~iiY~~f~s~~~~~~~~~~llP~~~~~-------------~~~~----~--------~--~~~~-~--~~~ 203 (285)
T TIGR03323 154 REQGQLAELYLFFNRPSSGGSYEPTCQRLLPLDETW-------------QRQL----A--------T--QQWP-T--KCL 203 (285)
T ss_pred hhcCCCcEEEEEecccccCcccceeeEEeeCCCccc-------------cccc----c--------c--cccc-c--CCC
Confidence 9999999999999999999999999999995310 0000 0 0 0000 0 113
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHh
Q 017130 291 MLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAE 370 (376)
Q Consensus 291 ~~fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsGAe 370 (376)
|+|||+++++|+.|+|.||++.||+|++||+||||+|||+||++|||||+||+++|+++|||+||++||+||+|||+||+
T Consensus 204 ~~~ep~~~~il~~L~~~yl~~~ly~alles~asE~aaRm~AM~~At~Na~e~i~~L~~~yNr~RQa~IT~Ei~EIvsGae 283 (285)
T TIGR03323 204 PELMGEPEETFSALIREYLFVSLFRACAESLASENASRLAAMQRAEKNIDELLDDLNRRFHRLRQSAIDEELFDVVSGFE 283 (285)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh
Q 017130 371 AL 372 (376)
Q Consensus 371 Al 372 (376)
||
T Consensus 284 al 285 (285)
T TIGR03323 284 AL 285 (285)
T ss_pred cC
Confidence 96
No 14
>KOG1531 consensus F0F1-type ATP synthase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=8.4e-73 Score=528.26 Aligned_cols=275 Identities=41% Similarity=0.575 Sum_probs=246.4
Q ss_pred cccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcccCCCCCCCCcCCCCceEEE
Q 017130 50 RCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAI 129 (376)
Q Consensus 50 ~a~lkeIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~~ 129 (376)
+|+||+|+.||+|||||||||++|||||++|++|||+++.+.|||.+...++++++ +.++|+...+++||+++
T Consensus 28 ~Atlkei~~RlkSVKNiQKITksMKmVAaaK~~rAer~~~~ar~~~~~~~~~~~~~-------d~~~p~~e~~~~kK~~l 100 (304)
T KOG1531|consen 28 FATLKEIRIRLKSVKNIQKITKSMKMVAAAKYARAERALKAARPYGEGAVEFFKNI-------DIDVPLTEEGEVKKVLL 100 (304)
T ss_pred cchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHhhc-------cCCCCccccccccceEE
Confidence 59999999999999999999999999999999999999999999999999998876 46789988899999999
Q ss_pred EEEeCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCCceeeEee-cCC-CCCCHHHHHHHHHHH
Q 017130 130 VIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNVSVIRCI-EGE-GFYTVKEAQTIADNV 207 (376)
Q Consensus 130 IVitSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~~~v~~~~-~~~-~~p~~~~a~~I~~~l 207 (376)
|++|||||||||+|+.|.|.+..++++++. |+++.+++||+|++.+|.|++...+...+ ++| .+|+|+++.-|++++
T Consensus 101 V~vtsDrGLCGgihssi~K~~r~~l~~~~~-~~e~~vv~iGdK~ra~l~R~~~~~i~ls~~eig~~pptf~~asvia~~i 179 (304)
T KOG1531|consen 101 VAVTSDRGLCGGIHSSIAKKARRELNDLKG-GKEVRVVIIGDKIRAILLRLHPNSILLSINEIGRAPPTFEDASVIADEI 179 (304)
T ss_pred EEEecCCccccchhHHHHHHHHHHHHhccC-CCceEEEEEchhhhhheeecCchhhhhhHhhcCCCCCcHHHHHHHHHHH
Confidence 999999999999999999999999998776 88999999999999999988766655444 444 588999999999998
Q ss_pred HhhhhcCCccEEEEEeecccccccccceeeeeecCccCccccccCCcccchhhhhHhhhhcccccchhhccccccccCCC
Q 017130 208 FSLFVSEEVDKVELVYTKFVSLVKSDPVIHTLLPLSMKGVICNENGMCVDAVEDELFRLTTNEGKMIVERDSVTFNKGEL 287 (376)
Q Consensus 208 ~~~~~~~e~d~v~viy~~f~s~~~q~p~~~~LLPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (376)
++.- ++||++.|+||+|+|.++++|+..+|||+...++.|++. |.|
T Consensus 180 l~~~--~e~d~~~ivyNkF~SvVs~e~~~~~il~l~~i~~s~~l~--~~d------------------------------ 225 (304)
T KOG1531|consen 180 LLSG--YEFDKGSIVYNKFKSVVSYETSEKPILPLETIEESESLS--CYD------------------------------ 225 (304)
T ss_pred Hhhh--ccccceEEEeecchhheeeccccccccCHHHhccccccc--chh------------------------------
Confidence 8654 799999999999999999999999999998743333221 111
Q ss_pred CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 017130 288 SPLMLFEQDPAQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVA 367 (376)
Q Consensus 288 ~~~~~fEp~~~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVs 367 (376)
--.++++..|+|.||.++||+++.||.+||++|||+||+||++||.|||++|++.|||+|||.||.||+|||+
T Consensus 226 -------~iddev~q~~~e~~la~~I~~am~Es~~SE~saRm~AMdnaSkNAgemi~kltl~yNRtRQA~IT~ELieIis 298 (304)
T KOG1531|consen 226 -------SIDDEVLQSLMEYSLANQIYYAMKESATSELSARMNAMDNASKNAGEMIDKLTLTYNRTRQAVITNELIEIIS 298 (304)
T ss_pred -------hhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCHHHHHHHHhhhhhhhcccchHHHHHHHHh
Confidence 2235677779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhh
Q 017130 368 GAEALT 373 (376)
Q Consensus 368 GAeAl~ 373 (376)
||+||.
T Consensus 299 GA~al~ 304 (304)
T KOG1531|consen 299 GASALT 304 (304)
T ss_pred hhhhcC
Confidence 999973
No 15
>PF00700 Flagellin_C: Bacterial flagellin C-terminal helical region; InterPro: IPR001029 Bacterial flagella are responsible for motility and chemotaxis []. They comprise a basal body, a hook and a filament, the latter accounting for 98% of the mass []. Flagellin is the subunit protein that polymerises to form the flagellae [], the subunits being transported through the centre of the filament to the tip, where they then polymerise []. Both the N- and C- termini of the subunit protein, which are alpha-helical in structure [], are required to mediate polymerisation. Although no export or assembly consensus sequences have been identified, Ala, Val, Leu, Ile, Gly, Ser, Thr, Asn, Gln and Asp tend to make up around 90% of the sequence, Cys and Trp being absent []. This entry represents the N and C termini that come together to form the D0 and D1 structural domains []. These domains are responsible for flagellin's ability to polymerise into a filament. ; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum; PDB: 1ORY_B 3V47_C 1IO1_A 1UCU_A 3A5X_A 3K8V_A 2ZBI_B 3K8W_A.
Probab=77.77 E-value=18 Score=28.20 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhh
Q 017130 319 ESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGAEA 371 (376)
Q Consensus 319 ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsGAeA 371 (376)
.+..++.++|++.++.+.++.......|+....+.+-.-+.+++.++...--+
T Consensus 12 ~~~~a~lGa~~~~l~~~~~~~~~~~~~l~~~~s~i~d~D~a~~~~~l~~~~~~ 64 (86)
T PF00700_consen 12 SSARAQLGARQNRLESAKDRLSNQSENLTASLSNIEDADMAEAITNLTQAQTQ 64 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999998765443
No 16
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=60.97 E-value=17 Score=29.07 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhh
Q 017130 144 KAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRH 179 (376)
Q Consensus 144 ~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~ 179 (376)
..|+..+++.+++++..|-++.++.+|...+.|++.
T Consensus 8 i~il~~ie~~inELk~dG~ePDivL~G~ef~e~~~~ 43 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDIVLVGPEFYEFLSE 43 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----EEEE-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEcHHHHHHHHH
Confidence 356667778888999999999999999999999875
No 17
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.56 E-value=51 Score=31.25 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=37.4
Q ss_pred cccccHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccH
Q 017130 48 PIRCGLRELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRP 93 (376)
Q Consensus 48 ~~~a~lkeIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rp 93 (376)
+.--+|.+|.++|++|++ .|+++|.+-+.+|.|+|+++....-.
T Consensus 150 ~Ld~kl~di~~~i~~i~~--nl~k~~~~q~~lRa~EaRDr~L~esN 193 (236)
T KOG3287|consen 150 QLDVKLDDIEDSIGTIKN--NLNKMWQYQALLRAREARDRNLQESN 193 (236)
T ss_pred hhcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHhcc
Confidence 333489999999999996 79999999999999999998765554
No 18
>PF03598 CdhC: CO dehydrogenase/acetyl-CoA synthase complex beta subunit; InterPro: IPR004461 The carbon monoxide dehydrogenase alpha subunit (1.2.99.2 from EC) catalyses the interconversion of CO and CO2 and the synthesis of acteyl-coA from the methylated corrinoid/iron sulphur protein, CO and CoA. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.; GO: 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0006084 acetyl-CoA metabolic process; PDB: 2Z8Y_O 1MJG_N 3GIT_A 3S2X_B 3I01_O 3I04_N 1OAO_C 1RU3_A.
Probab=35.14 E-value=19 Score=36.96 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=15.2
Q ss_pred EEEeCCC-CCCccchHHHHHHHHH
Q 017130 130 VIITGDR-GLCGGFNKAVIKKAEN 152 (376)
Q Consensus 130 IVitSDr-GLCG~fN~~Iik~~~~ 152 (376)
=|||.|| ||||++|=-=.|.+-+
T Consensus 201 CvvtPeR~~lCGaisWlDakAa~e 224 (411)
T PF03598_consen 201 CVVTPERPGLCGAISWLDAKAAYE 224 (411)
T ss_dssp EEEBTTB--TTSS--HHHHHHHHH
T ss_pred EEECCCCcccccccchhhhhhhhc
Confidence 3689998 9999999776666543
No 19
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=34.88 E-value=2.1e+02 Score=26.68 Aligned_cols=98 Identities=12% Similarity=0.213 Sum_probs=54.5
Q ss_pred cHHHHHHHHHHHHHHhhcccCCCCCCCCcCCCCceEEEEEEeCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeeh
Q 017130 92 RPFVEKLVEFLYVINEQLQLDDIDVPLTNIRPVKKVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGK 171 (376)
Q Consensus 92 rpY~~~l~~vl~~l~~~~~~~~~~~pl~~~~~~k~~~~IVitSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~ 171 (376)
-.|...|++++.+..... +...-.+|+|=+|-|. +.+ +.+.+.+.+-...+.-..++.||+
T Consensus 83 t~y~~vm~~v~~~y~~~~-------------~~~~P~~VlFiTDG~~----~~~--~~~~~~i~~as~~pifwqFVgiG~ 143 (200)
T PF10138_consen 83 TNYAPVMEDVLDHYFKRE-------------PSDAPALVLFITDGGP----DDR--RAIEKLIREASDEPIFWQFVGIGD 143 (200)
T ss_pred cchHHHHHHHHHHHhhcC-------------CCCCCeEEEEEecCCc----cch--HHHHHHHHhccCCCeeEEEEEecC
Confidence 567777787776654321 0111257778888653 333 444555554444444566888999
Q ss_pred hhHHHHhhcCC-----ceeeEeecCCCCCCHHHHHHHHHHHHh
Q 017130 172 KGNAYFRHRSN-----VSVIRCIEGEGFYTVKEAQTIADNVFS 209 (376)
Q Consensus 172 Kg~~~~~~~~~-----~~v~~~~~~~~~p~~~~a~~I~~~l~~ 209 (376)
....||++-.. .....++.+++.+..++. ++-+.+++
T Consensus 144 ~~f~fL~kLD~l~gR~vDNa~Ff~~~d~~~lsD~-eLy~~LL~ 185 (200)
T PF10138_consen 144 SNFGFLEKLDDLAGRVVDNAGFFAIDDIDELSDE-ELYDRLLA 185 (200)
T ss_pred CcchHHHHhhccCCcccCCcCeEecCCcccCCHH-HHHHHHHH
Confidence 99999987532 122345656554444332 33444443
No 20
>PRK09529 bifunctional acetyl-CoA decarbonylase/synthase complex subunit alpha/beta; Reviewed
Probab=34.05 E-value=68 Score=35.24 Aligned_cols=24 Identities=33% Similarity=0.595 Sum_probs=18.0
Q ss_pred EEEEeCCC-CCCccchHHHHHHHHH
Q 017130 129 IVIITGDR-GLCGGFNKAVIKKAEN 152 (376)
Q Consensus 129 ~IVitSDr-GLCG~fN~~Iik~~~~ 152 (376)
+-|||.|| ||||++|=-=-|.+.+
T Consensus 500 VCvvtPeR~~lCGaiswlD~kaa~e 524 (711)
T PRK09529 500 VCVVTPERPGLCGAVSWLDAKAAYE 524 (711)
T ss_pred eEEECCCCCccccccchhhhhhhhc
Confidence 33689998 9999999766665543
No 21
>smart00216 VWD von Willebrand factor (vWF) type D domain. Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.
Probab=33.96 E-value=14 Score=32.12 Aligned_cols=12 Identities=42% Similarity=0.922 Sum_probs=9.8
Q ss_pred CCCCCccchHHH
Q 017130 135 DRGLCGGFNKAV 146 (376)
Q Consensus 135 DrGLCG~fN~~I 146 (376)
=+||||.||.+-
T Consensus 142 ~~GLCGn~ng~~ 153 (162)
T smart00216 142 TCGLCGNFDGEP 153 (162)
T ss_pred eeEccCCCCCCc
Confidence 479999999764
No 22
>PRK04456 acetyl-CoA decarbonylase/synthase complex subunit beta; Reviewed
Probab=32.58 E-value=24 Score=36.62 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=18.0
Q ss_pred EEEEeCCC-CCCccchHHHHHHHHH
Q 017130 129 IVIITGDR-GLCGGFNKAVIKKAEN 152 (376)
Q Consensus 129 ~IVitSDr-GLCG~fN~~Iik~~~~ 152 (376)
+-|||.|| ||||++|=-=-|.+.+
T Consensus 202 VCvvtPeR~~lCGaisW~D~rAa~~ 226 (463)
T PRK04456 202 VCVITPDRPSLCGAINWFDGRAAAK 226 (463)
T ss_pred eEEECCCCcccccccchhhhhhhhh
Confidence 33689998 9999999766665543
No 23
>TIGR00316 cdhC CO dehydrogenase/CO-methylating acetyl-CoA synthase complex, beta subunit. Nomenclature follows the description for Methanosarcina thermophila. The CO-methylating acetyl-CoA synthase is considered the defining enzyme of the Wood-Ljungdahl pathway, used for acetate catabolism by sulfate reducing bacteria but for acetate biosynthesis by acetogenic bacteria such as oorella thermoacetica (f. Clostridium thermoaceticum).
Probab=30.88 E-value=27 Score=36.24 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=18.0
Q ss_pred EEEEeCCC-CCCccchHHHHHHHHH
Q 017130 129 IVIITGDR-GLCGGFNKAVIKKAEN 152 (376)
Q Consensus 129 ~IVitSDr-GLCG~fN~~Iik~~~~ 152 (376)
+-|||.|| ||||++|=-=-|.+.+
T Consensus 199 VCvvtPeR~~lCGaisW~D~rAa~~ 223 (458)
T TIGR00316 199 VCIVTPDRPSLCGAINWFDARAAAK 223 (458)
T ss_pred eEEECCCCcccccccchhhhhhhhh
Confidence 33689998 9999999766665543
No 24
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=30.20 E-value=2.6e+02 Score=28.49 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHH
Q 017130 306 PLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAGA 369 (376)
Q Consensus 306 p~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsGA 369 (376)
+.||+.++-..+.+ -.+...++..++..-+.+..-+.+++.++|+ ||.||..|=.-.
T Consensus 261 Ek~iN~qle~l~~e--Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~-----IseeLe~vK~em 317 (359)
T PF10498_consen 261 EKYINNQLEPLIQE--YRSAQDELSEVQEKYKQASEGVSERTRELAE-----ISEELEQVKQEM 317 (359)
T ss_pred HHHHHHHhHHHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 45899888877777 5667788888888888888888888888854 888887775433
No 25
>PF00094 VWD: von Willebrand factor type D domain; InterPro: IPR001846 A family of growth regulators (originally called cef10, connective tissue growth factor, fisp-12, cyr61, or, alternatively, beta IG-M1 and beta IG-M2), all belong to immediate-early genes expressed after induction by growth factors or certain oncogenes. Sequence analysis of this family revealed the presence of four distinct modules. Each module has homologues in other extracellular mosaic proteins such as Von Willebrand factor, slit, thrombospondins, fibrillar collagens, IGF-binding proteins and mucins. Classification and analysis of these modules suggests the location of binding regions and, by analogy to better characterised modules in other proteins, sheds some light onto the structure of this new family []. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. One of the functions of von Willebrand factor (vWF) is to serve as a carrier of clotting factor VIII (FVIII). The native conformation of the D' domain of vWF is not only required for factor VIII (FVIII) binding but also for normal multimerisation and optimal secretion. The interaction between blood clotting factor VIII and VWF is necessary for normal survival of blood clotting factor VIII in blood circulation. The VWFD domain is a highly structured region, in which the first conserved Cys has been found to form a disulphide bridge with the second conserved one [].
Probab=28.67 E-value=22 Score=30.22 Aligned_cols=12 Identities=42% Similarity=0.922 Sum_probs=9.8
Q ss_pred CCCCCccchHHH
Q 017130 135 DRGLCGGFNKAV 146 (376)
Q Consensus 135 DrGLCG~fN~~I 146 (376)
=.||||.||.+-
T Consensus 138 t~GLCG~~dg~~ 149 (159)
T PF00094_consen 138 TCGLCGNFDGEP 149 (159)
T ss_pred cccccCCCCCCc
Confidence 359999999764
No 26
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=27.78 E-value=95 Score=29.29 Aligned_cols=48 Identities=13% Similarity=0.041 Sum_probs=31.4
Q ss_pred eEEEEEEeCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCC
Q 017130 126 KVAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSN 182 (376)
Q Consensus 126 ~~~~IVitSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~ 182 (376)
...||||||-.|. +...+.+.+....-....+++||++-...++..|.
T Consensus 55 ~~d~iifTS~naV---------~~~~~~l~~~~~~~~~~~~~aVG~~Ta~al~~~G~ 102 (255)
T PRK05752 55 RYCAVIVVSKPAA---------RLGLELLDRYWPQPPQQPWFSVGAATAAILQDYGL 102 (255)
T ss_pred CCCEEEEECHHHH---------HHHHHHHHhhCCCCcCCEEEEECHHHHHHHHHcCC
Confidence 3458999997773 33333333221111236899999999999998774
No 27
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=26.75 E-value=3e+02 Score=23.37 Aligned_cols=73 Identities=12% Similarity=0.043 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhCCCceEEEEeeh-----------hhHHHHhhcCCceeeEeecCCCCCCHHHHHHHHHHHHhhhhcCCc
Q 017130 148 KKAENRMVELKDMGLDCVVISVGK-----------KGNAYFRHRSNVSVIRCIEGEGFYTVKEAQTIADNVFSLFVSEEV 216 (376)
Q Consensus 148 k~~~~~i~~~~~~g~~~~li~VG~-----------Kg~~~~~~~~~~~v~~~~~~~~~p~~~~a~~I~~~l~~~~~~~e~ 216 (376)
..+.+..++ |....+++.|. ...+++...|...-.-..+.....|++++....+.+ ....+
T Consensus 27 ~~a~~L~~~----g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~~~~~~~----~~~~~ 98 (155)
T PF02698_consen 27 DEAARLYKA----GYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVPEERIILEPKSTNTYENARFSKRLL----KERGW 98 (155)
T ss_dssp HHHHHHHH-----HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---GGGEEEE----SHHHHHHHHHHHH----HT-SS
T ss_pred HHHHHHHhc----CCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccchheeEccCCCCCHHHHHHHHHHHH----HhhcC
Confidence 444444443 44566888993 344666666632111112222344677765444333 34456
Q ss_pred cEEEEEeecccc
Q 017130 217 DKVELVYTKFVS 228 (376)
Q Consensus 217 d~v~viy~~f~s 228 (376)
.+|.||-..|..
T Consensus 99 ~~iilVT~~~H~ 110 (155)
T PF02698_consen 99 QSIILVTSPYHM 110 (155)
T ss_dssp S-EEEE--CCCH
T ss_pred CeEEEECCHHHH
Confidence 899999888753
No 28
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=26.64 E-value=1.1e+02 Score=22.16 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHH
Q 017130 322 ASEVAARMSAMSTATDNADELKKNLSVAYNQERQA 356 (376)
Q Consensus 322 aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa 356 (376)
..|.-.|+.+.+.-- +.=|++|...|...||-
T Consensus 10 ~~eL~~rl~~LD~~M---E~Eieelr~RY~~KRqP 41 (49)
T PF11629_consen 10 YEELQQRLASLDPEM---EQEIEELRQRYQAKRQP 41 (49)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHH---HHHHHHHHHHHHHhhcc
Confidence 457778888877654 44599999999999995
No 29
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=26.53 E-value=1.5e+02 Score=27.75 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=31.1
Q ss_pred EEEEEeCCCCCCc-cchHHHHHHHHHHHHHHhhCCCceEEEEeehhh
Q 017130 128 AIVIITGDRGLCG-GFNKAVIKKAENRMVELKDMGLDCVVISVGKKG 173 (376)
Q Consensus 128 ~~IVitSDrGLCG-~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg 173 (376)
.++++|.|=|++| .|....++++.+..+.....+.++.+.+.|.-.
T Consensus 131 ~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~ 177 (220)
T PRK08883 131 LILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK 177 (220)
T ss_pred eEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC
Confidence 5788999999987 488888777665443333334456677777543
No 30
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=26.32 E-value=1.6e+02 Score=29.64 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 017130 320 SFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIV 366 (376)
Q Consensus 320 S~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIV 366 (376)
+..++.+++.+-++.+.+|...+.+.|+....+.|-.-.++|+.+..
T Consensus 286 ~~ra~lGa~qnrl~~~~~~l~~~~~nl~~~~s~i~D~D~aee~t~l~ 332 (360)
T COG1344 286 SARAELGAVQNRLESAINNLSNQSDNLTAAESRIVDVDMAEESTELT 332 (360)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 68899999999999999999999999999999999999999999874
No 31
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=25.21 E-value=25 Score=34.00 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=16.3
Q ss_pred ceEEEEEEeCCCCCCccchHHHHHH
Q 017130 125 KKVAIVIITGDRGLCGGFNKAVIKK 149 (376)
Q Consensus 125 k~~~~IVitSDrGLCG~fN~~Iik~ 149 (376)
+.++|| ||-|+||.||+-|=-.
T Consensus 189 ~GTayi---TDvGMtG~~dSviG~~ 210 (266)
T COG1692 189 KGTAYI---TDVGMTGPYDSVIGMN 210 (266)
T ss_pred CCcEEE---ecCcccccccccccCC
Confidence 345555 7999999999877443
No 32
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=24.12 E-value=3.5e+02 Score=21.03 Aligned_cols=66 Identities=15% Similarity=0.112 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 017130 298 AQILDAMMPLYMNSQILRALQESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEI 365 (376)
Q Consensus 298 ~~il~~Llp~Yl~~~ly~al~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EI 365 (376)
++|+.-++.+=+++.||-.|+=+..=++.-|-.-++.=.++-.++|++++-++|... .|-..+.||
T Consensus 3 ~ei~k~~~sQG~fA~LFv~Ll~yvlK~~~~re~~~~~RE~kyq~~I~~lte~~~~~~--~~~~dv~ei 68 (71)
T PF10960_consen 3 EEIIKLALSQGIFAVLFVWLLFYVLKENKKREEKQEEREEKYQEQIEKLTEKLNVIE--EIKEDVKEI 68 (71)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 567777888888888888888888888886666666667888888999888887765 344444443
No 33
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated
Probab=23.71 E-value=1.9e+02 Score=28.00 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 017130 319 ESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAG 368 (376)
Q Consensus 319 ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsG 368 (376)
-...+|.++|++-|+.+.++.++..-.|+...++.+-.-+.+++.|...-
T Consensus 215 ~~~~a~~Ga~~nrle~~~~~~~~~~~~l~~~~s~i~d~D~a~a~~~l~~~ 264 (287)
T PRK08073 215 INRTTEVGGTMNTVETFKTILSEQNLALQENRKEIEDVDLAVAISDLAYI 264 (287)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999998653
No 34
>PRK12803 flagellin; Provisional
Probab=23.13 E-value=2.8e+02 Score=27.85 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 017130 318 QESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVA 367 (376)
Q Consensus 318 ~ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVs 367 (376)
+.+.-++.+||.+-++.+.+|.+.....|+..+-|.|-.-+.+|+.+...
T Consensus 259 v~~~Ra~lGA~qNRle~~~~~l~~~~~nl~~a~S~i~D~D~A~e~~~~~~ 308 (335)
T PRK12803 259 ISDQRANLGAFQNRLESIKASTEYAIENLKASYAQIKDATMTDEVVASTT 308 (335)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 34778999999999999999999999999999999999999999998754
No 35
>PF14156 AbbA_antirepres: Antirepressor AbbA
Probab=22.84 E-value=3.4e+02 Score=20.51 Aligned_cols=37 Identities=30% Similarity=0.482 Sum_probs=27.9
Q ss_pred HHHHHH-HHHHHHHHHHHHhHHHH-HHHHHHHHHHhHHH
Q 017130 320 SFASEV-AARMSAMSTATDNADEL-KKNLSVAYNQERQA 356 (376)
Q Consensus 320 S~aSE~-aARm~AM~~AtdNA~el-i~~L~l~yNr~RQa 356 (376)
..|+|. ++-.+-.++-++|+++. -++|...|+|.|++
T Consensus 25 ~YA~Ells~El~DIE~G~K~vD~~~Yk~l~rLydRl~~E 63 (63)
T PF14156_consen 25 NYASELLSSELNDIENGTKNVDESQYKQLLRLYDRLRNE 63 (63)
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHhcC
Confidence 444454 44466789999999876 58899999999974
No 36
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=22.31 E-value=1.4e+02 Score=22.82 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=22.1
Q ss_pred CCCCccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 017130 287 LSPLMLFEQDPAQILDAMMPLYMNSQILRALQ 318 (376)
Q Consensus 287 ~~~~~~fEp~~~~il~~Llp~Yl~~~ly~al~ 318 (376)
++|...++|+.+++|-.+...|+...+-.++.
T Consensus 12 iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~ 43 (68)
T PF03847_consen 12 IDPNEKLDPDVEELLLELADDFVDDVVSFACR 43 (68)
T ss_dssp C-SS----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788999999999999999987765544
No 37
>PF02870 Methyltransf_1N: 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; InterPro: IPR008332 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources []. This group of proteins are characterised by having an N-terminal ribonuclease-like domain associated with 6-O-methylguanine DNA methyltransferase activity (IPR001497 from INTERPRO).; GO: 0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A.
Probab=22.30 E-value=39 Score=25.72 Aligned_cols=12 Identities=33% Similarity=1.157 Sum_probs=10.2
Q ss_pred EEEEeCCCCCCc
Q 017130 129 IVIITGDRGLCG 140 (376)
Q Consensus 129 ~IVitSDrGLCG 140 (376)
+.++++++|||+
T Consensus 14 l~l~a~e~gL~~ 25 (77)
T PF02870_consen 14 LLLAASEKGLCG 25 (77)
T ss_dssp EEEEEETTCEEE
T ss_pred EEEEEECCeEEE
Confidence 667899999996
No 38
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=21.61 E-value=48 Score=31.33 Aligned_cols=49 Identities=14% Similarity=0.052 Sum_probs=34.4
Q ss_pred EEEEEEeCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCCc
Q 017130 127 VAIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNV 183 (376)
Q Consensus 127 ~~~IVitSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~~ 183 (376)
..||++||-.|.+.-|+.-...... . -.+..+++||.+-...+++.|..
T Consensus 51 ~d~vvfTS~~av~~~~~~l~~~~~~-~-------~~~~~i~aVG~~Ta~~l~~~G~~ 99 (248)
T COG1587 51 ADWVVFTSPNAVRFFFEALKEQGLD-A-------LKNKKIAAVGEKTAEALRKLGIK 99 (248)
T ss_pred CCEEEEECHHHHHHHHHHHHhhccc-c-------cccCeEEEEcHHHHHHHHHhCCC
Confidence 4699999999998655543322211 0 12467999999999999998743
No 39
>PF07341 DUF1473: Protein of unknown function (DUF1473); InterPro: IPR009941 This entry represents a family of hypothetical proteins of around 150 residues in length found in Borrelia species. The function of this family is unknown.
Probab=21.15 E-value=5.2e+02 Score=22.98 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=44.2
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh
Q 017130 54 RELKERLNTVKNTQKITEAMKLVAAARVRKAQEAVISSRPFVEKLVEFLYVINEQ 108 (376)
Q Consensus 54 keIk~RI~SVk~t~KITkAMkmVAaaKlrkaq~~~~~~rpY~~~l~~vl~~l~~~ 108 (376)
.++..+++-++-+++||+-| |+..=+-..-..+..-|.|..--+..|-.++-.
T Consensus 37 d~li~kLN~~~~Lk~IT~lM--Is~~FlDEFY~ILn~nR~y~s~YK~~L~~Ilys 89 (163)
T PF07341_consen 37 DELIDKLNNLQYLKEITSLM--ISPGFLDEFYEILNQNREYSSLYKYYLPTILYS 89 (163)
T ss_pred hHHHHHhhhHHHHHHHHHHH--cCHhHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 46799999999999999975 788888888888888999988888877766543
No 40
>PRK12807 flagellin; Provisional
Probab=20.57 E-value=2.9e+02 Score=26.81 Aligned_cols=50 Identities=16% Similarity=0.225 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 017130 319 ESFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAG 368 (376)
Q Consensus 319 ES~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsG 368 (376)
-+..++.+||++-++.+.++..+....|+....+.+-+-+.+|+.|....
T Consensus 212 ~~~ra~iGa~~nrLe~~~~~l~~~~~~l~~~~S~i~DaD~a~~~~~l~~~ 261 (287)
T PRK12807 212 AGNRATLGATLNRLDRNVENLNNQATNMASAASQIEDADMAKEMSEMTKF 261 (287)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999998653
No 41
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=20.52 E-value=1.3e+02 Score=27.89 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=29.0
Q ss_pred EEEEEeCCCCCCccchHHHHHHHHHHHHHHhhCCCceEEEEeehhhHHHHhhcCCc
Q 017130 128 AIVIITGDRGLCGGFNKAVIKKAENRMVELKDMGLDCVVISVGKKGNAYFRHRSNV 183 (376)
Q Consensus 128 ~~IVitSDrGLCG~fN~~Iik~~~~~i~~~~~~g~~~~li~VG~Kg~~~~~~~~~~ 183 (376)
.+|||||-.|.=. +.+....... ..+..+++||++-...+++.|..
T Consensus 50 d~iifTS~naV~~---------~~~~~~~~~~-~~~~~~~aVG~~Ta~~l~~~G~~ 95 (240)
T PRK09189 50 GAIAVTSAEAVRH---------LAALGERLLP-HLALPLFAVGEATAEAARELGFR 95 (240)
T ss_pred CEEEEECHHHHHH---------HHhcchhhHH-hcCCeEEEEcHHHHHHHHHcCCC
Confidence 4899999887621 1111111110 12457999999999999988744
No 42
>PRK07192 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=20.45 E-value=2.3e+02 Score=27.47 Aligned_cols=49 Identities=10% Similarity=0.176 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 017130 320 SFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVAG 368 (376)
Q Consensus 320 S~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVsG 368 (376)
...++.++|+..++.+.++.+.....|+..+++.+-.-+.+++.|+..-
T Consensus 234 ~~ra~iGa~~~rle~~~~~~~~~~~~l~~~~s~i~dvD~aea~~~l~~~ 282 (305)
T PRK07192 234 TVRTELGSRQNELDLLDGNHEDRKLQYQKILSDLQDLDYAEALSDLSNQ 282 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999988653
No 43
>PRK12687 flagellin; Reviewed
Probab=20.32 E-value=2.8e+02 Score=27.39 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 017130 320 SFASEVAARMSAMSTATDNADELKKNLSVAYNQERQAKITGELLEIVA 367 (376)
Q Consensus 320 S~aSE~aARm~AM~~AtdNA~eli~~L~l~yNr~RQa~IT~EI~EIVs 367 (376)
+..++.++|++.++...+|..++...++...-+.+-+-+.+|+.|...
T Consensus 237 ~~ra~lGA~~NrLe~~~~~~~~~~~~~~~~~S~l~DaD~a~e~s~l~~ 284 (311)
T PRK12687 237 QASADLGATKTRIDSNSNFVKSLRDAIDRGVGQLVDADMNAESTRLQA 284 (311)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence 566999999999999999999999999999999999999999999873
Done!