Query 017132
Match_columns 376
No_of_seqs 438 out of 3985
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:53:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017132.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017132hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09563 rbgA GTPase YlqF; Rev 100.0 4.5E-55 9.7E-60 418.2 32.6 275 99-376 3-283 (287)
2 TIGR03596 GTPase_YlqF ribosome 100.0 6.8E-54 1.5E-58 407.9 31.8 270 100-372 1-276 (276)
3 COG1161 Predicted GTPases [Gen 100.0 8.3E-47 1.8E-51 365.6 24.8 277 98-375 12-299 (322)
4 KOG2484 GTPase [General functi 100.0 2.3E-45 5E-50 350.3 21.6 267 95-371 121-403 (435)
5 COG2262 HflX GTPases [General 100.0 5E-45 1.1E-49 351.4 3.6 220 43-287 20-265 (411)
6 KOG2485 Conserved ATP/GTP bind 100.0 1.3E-39 2.8E-44 303.2 24.0 279 89-373 15-322 (335)
7 KOG2423 Nucleolar GTPase [Gene 100.0 8.1E-40 1.8E-44 310.7 18.6 249 105-370 198-457 (572)
8 KOG1424 Predicted GTP-binding 100.0 1E-38 2.2E-43 312.8 22.4 255 109-375 163-476 (562)
9 TIGR03156 GTP_HflX GTP-binding 100.0 3.1E-36 6.8E-41 295.0 9.8 218 43-285 17-260 (351)
10 PRK11058 GTPase HflX; Provisio 100.0 1.9E-36 4.1E-41 303.1 6.9 217 44-285 26-268 (426)
11 cd01856 YlqF YlqF. Proteins o 100.0 5.5E-32 1.2E-36 239.7 19.6 171 102-273 1-171 (171)
12 cd01858 NGP_1 NGP-1. Autoanti 100.0 9.2E-29 2E-33 215.9 16.3 151 114-272 2-157 (157)
13 cd04178 Nucleostemin_like Nucl 100.0 1.5E-27 3.3E-32 211.4 16.0 150 122-272 1-172 (172)
14 cd01857 HSR1_MMR1 HSR1/MMR1. 100.0 3E-27 6.6E-32 202.8 16.0 136 111-275 2-141 (141)
15 cd01849 YlqF_related_GTPase Yl 99.9 1.1E-26 2.3E-31 202.5 16.9 151 122-272 1-155 (155)
16 COG1160 Predicted GTPases [Gen 99.9 1.1E-24 2.3E-29 213.7 16.4 164 107-275 70-239 (444)
17 cd01855 YqeH YqeH. YqeH is an 99.9 1.5E-24 3.3E-29 195.1 14.7 150 110-272 24-190 (190)
18 cd01859 MJ1464 MJ1464. This f 99.9 5.6E-24 1.2E-28 185.2 17.7 151 112-272 3-156 (156)
19 PRK13796 GTPase YqeH; Provisio 99.9 4.2E-23 9.2E-28 203.6 15.9 146 116-275 65-223 (365)
20 KOG0410 Predicted GTP binding 99.9 1E-24 2.2E-29 203.9 2.3 217 44-286 7-250 (410)
21 TIGR03597 GTPase_YqeH ribosome 99.9 1.1E-22 2.4E-27 200.4 16.0 154 108-275 51-217 (360)
22 PRK12289 GTPase RsgA; Reviewed 99.9 3.6E-22 7.7E-27 195.2 14.6 143 116-277 85-239 (352)
23 TIGR00157 ribosome small subun 99.9 3.6E-21 7.9E-26 180.0 13.5 142 117-278 33-187 (245)
24 PF13167 GTP-bdg_N: GTP-bindin 99.8 1.4E-21 3E-26 154.6 1.2 82 43-129 8-95 (95)
25 PRK12288 GTPase RsgA; Reviewed 99.8 2.6E-19 5.7E-24 175.0 14.6 141 117-277 117-272 (347)
26 PRK00098 GTPase RsgA; Reviewed 99.8 3E-19 6.6E-24 171.8 13.4 141 116-275 76-229 (298)
27 TIGR03594 GTPase_EngA ribosome 99.8 6.4E-19 1.4E-23 177.7 15.3 162 108-275 66-233 (429)
28 cd01854 YjeQ_engC YjeQ/EngC. 99.8 5.5E-19 1.2E-23 169.1 13.7 142 116-276 74-227 (287)
29 PRK03003 GTP-binding protein D 99.8 1E-18 2.2E-23 178.3 15.5 159 110-274 107-271 (472)
30 PRK00093 GTP-binding protein D 99.8 2.1E-18 4.7E-23 174.2 16.7 159 110-275 70-234 (435)
31 PRK09518 bifunctional cytidyla 99.8 6.1E-18 1.3E-22 180.4 16.1 163 109-275 343-511 (712)
32 COG1162 Predicted GTPases [Gen 99.6 2.8E-15 6E-20 141.7 14.4 141 118-277 77-231 (301)
33 PRK01889 GTPase RsgA; Reviewed 99.6 2.4E-15 5.2E-20 148.1 11.2 143 118-280 110-265 (356)
34 COG1084 Predicted GTPase [Gene 99.5 2E-14 4.4E-19 136.0 8.6 69 213-282 164-235 (346)
35 PF02421 FeoB_N: Ferrous iron 99.5 3.3E-14 7.2E-19 123.6 6.2 61 218-279 1-64 (156)
36 COG1159 Era GTPase [General fu 99.5 6E-14 1.3E-18 131.6 6.4 58 219-276 8-68 (298)
37 COG0486 ThdF Predicted GTPase 99.4 1.4E-13 2.9E-18 136.1 7.2 60 215-274 215-277 (454)
38 PF03193 DUF258: Protein of un 99.4 3.5E-13 7.6E-18 117.4 7.2 95 166-278 2-103 (161)
39 COG1160 Predicted GTPases [Gen 99.4 1.7E-13 3.6E-18 135.2 5.2 59 218-276 4-65 (444)
40 PF01926 MMR_HSR1: 50S ribosom 99.4 5E-13 1.1E-17 110.2 5.4 58 219-276 1-61 (116)
41 COG0218 Predicted GTPase [Gene 99.3 2.2E-12 4.7E-17 115.0 5.9 59 217-275 24-83 (200)
42 KOG1191 Mitochondrial GTPase [ 99.3 3.8E-12 8.1E-17 125.9 7.0 59 216-274 267-328 (531)
43 PTZ00258 GTP-binding protein; 99.2 1.1E-11 2.3E-16 122.7 6.0 59 216-275 20-98 (390)
44 PRK12298 obgE GTPase CgtA; Rev 99.2 1.1E-11 2.3E-16 123.4 5.2 57 219-276 161-221 (390)
45 PRK05291 trmE tRNA modificatio 99.2 2.3E-11 5.1E-16 123.4 7.5 59 216-274 214-275 (449)
46 TIGR00436 era GTP-binding prot 99.2 1.6E-11 3.4E-16 116.6 5.6 57 219-275 2-61 (270)
47 COG1163 DRG Predicted GTPase [ 99.2 3.8E-11 8.3E-16 113.5 7.3 85 191-276 29-124 (365)
48 PRK09601 GTP-binding protein Y 99.2 1.9E-11 4E-16 119.7 5.2 57 218-275 3-79 (364)
49 cd01900 YchF YchF subfamily. 99.2 1.5E-11 3.2E-16 116.6 4.3 56 220-276 1-76 (274)
50 cd01852 AIG1 AIG1 (avrRpt2-ind 99.1 1.4E-10 3.1E-15 104.7 6.9 58 219-276 2-63 (196)
51 KOG1423 Ras-like GTPase ERA [C 99.1 1.2E-10 2.5E-15 109.3 5.6 62 216-277 71-135 (379)
52 PRK12299 obgE GTPase CgtA; Rev 99.1 1E-10 2.3E-15 114.2 5.4 57 218-275 159-219 (335)
53 PRK12296 obgE GTPase CgtA; Rev 99.1 1.3E-10 2.8E-15 118.3 5.2 57 218-275 160-219 (500)
54 TIGR00450 mnmE_trmE_thdF tRNA 99.1 3.1E-10 6.7E-15 114.8 7.6 59 216-274 202-263 (442)
55 KOG1490 GTP-binding protein CR 99.0 1.5E-10 3.2E-15 114.7 4.7 73 215-288 166-241 (620)
56 cd01878 HflX HflX subfamily. 99.0 6.1E-10 1.3E-14 100.8 8.4 84 190-275 15-102 (204)
57 KOG1489 Predicted GTP-binding 99.0 1.1E-10 2.4E-15 110.0 3.5 56 219-275 198-257 (366)
58 PRK12297 obgE GTPase CgtA; Rev 99.0 2E-10 4.3E-15 115.3 5.5 56 219-275 160-219 (424)
59 cd01853 Toc34_like Toc34-like 99.0 3.7E-10 7.9E-15 106.0 6.6 61 215-275 29-92 (249)
60 TIGR03598 GTPase_YsxC ribosome 99.0 5.1E-10 1.1E-14 99.4 6.4 59 217-275 18-77 (179)
61 COG0370 FeoB Fe2+ transport sy 99.0 3.2E-09 6.8E-14 109.6 12.8 57 218-275 4-63 (653)
62 PRK00454 engB GTP-binding prot 99.0 5.2E-10 1.1E-14 100.2 6.1 60 216-275 23-83 (196)
63 TIGR02729 Obg_CgtA Obg family 99.0 4.8E-10 1E-14 109.4 5.1 57 218-275 158-218 (329)
64 TIGR03594 GTPase_EngA ribosome 99.0 4.6E-10 9.9E-15 113.3 4.8 56 219-274 1-59 (429)
65 PRK15494 era GTPase Era; Provi 99.0 1.1E-09 2.4E-14 107.3 7.4 59 217-275 52-113 (339)
66 PRK09602 translation-associate 99.0 7E-10 1.5E-14 110.7 5.6 57 218-275 2-85 (396)
67 COG0536 Obg Predicted GTPase [ 98.9 4.4E-10 9.4E-15 107.2 3.7 57 219-276 161-221 (369)
68 PRK00089 era GTPase Era; Revie 98.9 8.7E-10 1.9E-14 105.7 5.7 58 219-276 7-67 (292)
69 PRK04213 GTP-binding protein; 98.9 8.8E-10 1.9E-14 99.5 5.3 54 217-272 9-62 (201)
70 TIGR00991 3a0901s02IAP34 GTP-b 98.9 2.1E-09 4.5E-14 103.0 7.4 60 216-275 37-99 (313)
71 PRK03003 GTP-binding protein D 98.9 1.9E-09 4.2E-14 110.3 6.4 57 217-273 38-97 (472)
72 cd01898 Obg Obg subfamily. Th 98.9 1.3E-09 2.7E-14 95.1 4.2 55 219-274 2-60 (170)
73 cd01897 NOG NOG1 is a nucleola 98.9 2.1E-09 4.6E-14 93.6 5.2 55 219-274 2-59 (168)
74 COG0012 Predicted GTPase, prob 98.9 1.7E-09 3.6E-14 104.9 4.5 57 218-275 3-80 (372)
75 cd01899 Ygr210 Ygr210 subfamil 98.8 2.3E-09 4.9E-14 104.0 4.7 55 220-275 1-82 (318)
76 KOG1491 Predicted GTP-binding 98.8 2.6E-09 5.6E-14 101.7 4.9 61 214-275 17-97 (391)
77 cd01896 DRG The developmentall 98.8 3.2E-09 7E-14 98.7 5.3 56 219-275 2-60 (233)
78 PRK00093 GTP-binding protein D 98.8 2.8E-09 6E-14 107.9 5.2 57 218-274 2-61 (435)
79 PRK09518 bifunctional cytidyla 98.8 3.7E-09 8.1E-14 113.3 5.9 57 218-274 276-335 (712)
80 cd04164 trmE TrmE (MnmE, ThdF, 98.8 4.8E-09 1E-13 89.7 5.4 58 218-275 2-62 (157)
81 PRK09554 feoB ferrous iron tra 98.8 5.3E-09 1.2E-13 112.3 6.3 56 218-274 4-62 (772)
82 cd01895 EngA2 EngA2 subfamily. 98.8 5.4E-09 1.2E-13 90.6 5.1 59 217-275 2-63 (174)
83 cd01894 EngA1 EngA1 subfamily. 98.8 3.8E-09 8.2E-14 90.4 4.1 55 221-275 1-58 (157)
84 cd01879 FeoB Ferrous iron tran 98.8 3.2E-09 7E-14 91.2 3.3 52 222-274 1-55 (158)
85 cd04163 Era Era subfamily. Er 98.7 1.7E-08 3.6E-13 86.6 6.0 59 217-275 3-64 (168)
86 TIGR00993 3a0901s04IAP86 chlor 98.7 2.5E-08 5.3E-13 103.2 8.1 62 216-277 117-181 (763)
87 cd01881 Obg_like The Obg-like 98.7 6.7E-09 1.4E-13 90.8 3.4 52 222-274 1-56 (176)
88 cd01876 YihA_EngB The YihA (En 98.7 1.6E-08 3.4E-13 87.1 5.3 56 220-275 2-58 (170)
89 TIGR00092 GTP-binding protein 98.7 1.8E-08 3.8E-13 99.0 5.4 58 218-275 3-80 (368)
90 cd04171 SelB SelB subfamily. 98.7 2.4E-08 5.3E-13 86.1 5.4 54 219-272 2-61 (164)
91 cd04166 CysN_ATPS CysN_ATPS su 98.6 2.1E-08 4.6E-13 91.4 3.4 55 219-273 1-88 (208)
92 PF04548 AIG1: AIG1 family; I 98.6 4.7E-08 1E-12 89.5 5.2 62 218-279 1-66 (212)
93 cd01887 IF2_eIF5B IF2/eIF5B (i 98.6 5.7E-08 1.2E-12 84.4 5.1 54 219-273 2-61 (168)
94 cd01851 GBP Guanylate-binding 98.6 8.8E-08 1.9E-12 88.5 6.7 61 218-278 8-76 (224)
95 TIGR00231 small_GTP small GTP- 98.6 8.2E-08 1.8E-12 81.1 5.8 55 218-273 2-61 (161)
96 PF00009 GTP_EFTU: Elongation 98.5 4.9E-07 1.1E-11 81.0 10.0 98 103-201 77-186 (188)
97 cd01861 Rab6 Rab6 subfamily. 98.5 1.1E-07 2.4E-12 82.0 5.1 53 219-272 2-59 (161)
98 PRK09866 hypothetical protein; 98.5 1.5E-07 3.2E-12 97.4 6.5 77 191-274 49-129 (741)
99 PRK15467 ethanolamine utilizat 98.5 1.1E-06 2.4E-11 76.7 10.6 94 109-203 53-148 (158)
100 cd04165 GTPBP1_like GTPBP1-lik 98.4 1.4E-06 3E-11 80.6 10.4 97 103-200 91-221 (224)
101 cd04171 SelB SelB subfamily. 98.4 1.3E-06 2.9E-11 75.1 9.8 95 104-199 59-163 (164)
102 PF10662 PduV-EutP: Ethanolami 98.4 3.3E-06 7.2E-11 72.2 11.8 91 108-199 51-143 (143)
103 TIGR00437 feoB ferrous iron tr 98.4 3.3E-07 7.2E-12 96.2 6.5 51 224-275 1-54 (591)
104 cd04104 p47_IIGP_like p47 (47- 98.4 2.9E-07 6.3E-12 83.2 4.5 58 218-275 2-65 (197)
105 cd00881 GTP_translation_factor 98.4 2.8E-07 6.1E-12 81.3 4.1 55 219-273 1-73 (189)
106 COG1159 Era GTPase [General fu 98.4 5.5E-06 1.2E-10 78.3 12.9 114 87-203 53-173 (298)
107 TIGR02836 spore_IV_A stage IV 98.4 3.6E-07 7.7E-12 90.2 4.6 60 216-275 16-104 (492)
108 cd01889 SelB_euk SelB subfamil 98.4 3.3E-07 7E-12 82.3 4.0 55 219-273 2-79 (192)
109 cd00154 Rab Rab family. Rab G 98.4 4.8E-07 1E-11 76.9 4.8 55 219-273 2-60 (159)
110 cd01863 Rab18 Rab18 subfamily. 98.3 7.7E-07 1.7E-11 76.8 6.1 55 219-273 2-60 (161)
111 COG3596 Predicted GTPase [Gene 98.3 3.3E-07 7.2E-12 85.5 4.0 64 216-279 38-104 (296)
112 PLN03118 Rab family protein; P 98.3 7.6E-07 1.7E-11 81.2 6.2 57 217-273 14-73 (211)
113 cd01860 Rab5_related Rab5-rela 98.3 6.5E-07 1.4E-11 77.3 5.3 55 218-272 2-60 (163)
114 COG2262 HflX GTPases [General 98.3 3.2E-06 7E-11 83.0 10.5 110 90-202 241-356 (411)
115 cd01868 Rab11_like Rab11-like. 98.3 6.5E-07 1.4E-11 77.7 5.3 55 218-273 4-63 (165)
116 cd00880 Era_like Era (E. coli 98.3 5.2E-07 1.1E-11 76.2 4.3 55 222-276 1-59 (163)
117 TIGR00436 era GTP-binding prot 98.3 4.8E-06 1E-10 79.1 11.3 92 111-203 70-165 (270)
118 cd01894 EngA1 EngA1 subfamily. 98.3 7E-06 1.5E-10 70.0 11.2 85 111-198 67-154 (157)
119 cd01866 Rab2 Rab2 subfamily. 98.3 1.1E-06 2.4E-11 76.8 6.3 55 218-272 5-63 (168)
120 TIGR02528 EutP ethanolamine ut 98.3 6.5E-06 1.4E-10 69.6 10.7 84 113-197 55-140 (142)
121 cd04154 Arl2 Arl2 subfamily. 98.3 9.2E-07 2E-11 77.7 5.6 55 217-273 14-69 (173)
122 PRK15467 ethanolamine utilizat 98.3 4E-07 8.6E-12 79.4 3.2 48 219-275 3-50 (158)
123 cd04155 Arl3 Arl3 subfamily. 98.3 1.2E-06 2.5E-11 76.7 5.5 56 217-273 14-69 (173)
124 cd04160 Arfrp1 Arfrp1 subfamil 98.3 7.4E-07 1.6E-11 77.4 4.2 55 219-273 1-61 (167)
125 cd01888 eIF2_gamma eIF2-gamma 98.3 6.7E-06 1.5E-10 74.6 10.6 96 104-200 91-197 (203)
126 PRK12317 elongation factor 1-a 98.3 8.6E-07 1.9E-11 89.6 5.0 57 216-272 5-94 (425)
127 KOG1249 Predicted GTPases [Gen 98.3 1.2E-06 2.6E-11 88.1 5.7 131 113-256 103-263 (572)
128 cd01850 CDC_Septin CDC/Septin. 98.2 1.5E-06 3.3E-11 82.9 6.0 59 216-274 3-75 (276)
129 cd01891 TypA_BipA TypA (tyrosi 98.2 1.1E-06 2.4E-11 78.9 4.7 55 219-273 4-76 (194)
130 cd01884 EF_Tu EF-Tu subfamily. 98.2 1.3E-06 2.8E-11 79.1 5.0 56 218-273 3-76 (195)
131 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.2 1.5E-06 3.2E-11 76.6 5.3 54 218-273 16-70 (174)
132 cd01889 SelB_euk SelB subfamil 98.2 1.1E-05 2.3E-10 72.4 10.8 106 86-200 66-184 (192)
133 cd04156 ARLTS1 ARLTS1 subfamil 98.2 1.4E-06 3.1E-11 75.0 4.9 53 219-273 1-55 (160)
134 cd01890 LepA LepA subfamily. 98.2 1E-06 2.2E-11 77.5 4.0 56 219-274 2-79 (179)
135 CHL00071 tufA elongation facto 98.2 1.6E-06 3.4E-11 87.3 5.8 57 216-272 11-85 (409)
136 cd04145 M_R_Ras_like M-Ras/R-R 98.2 1.5E-06 3.3E-11 75.0 4.9 54 218-273 3-61 (164)
137 cd04139 RalA_RalB RalA/RalB su 98.2 1.2E-06 2.6E-11 75.4 4.2 53 219-273 2-59 (164)
138 cd00878 Arf_Arl Arf (ADP-ribos 98.2 1.6E-06 3.4E-11 74.7 4.9 54 219-274 1-55 (158)
139 cd04157 Arl6 Arl6 subfamily. 98.2 1.5E-06 3.3E-11 74.8 4.8 54 219-273 1-56 (162)
140 cd04119 RJL RJL (RabJ-Like) su 98.2 1.7E-06 3.8E-11 74.6 5.1 54 218-272 1-59 (168)
141 cd01867 Rab8_Rab10_Rab13_like 98.2 2.7E-06 5.9E-11 74.2 6.3 56 217-273 3-63 (167)
142 KOG1486 GTP-binding protein DR 98.2 1.6E-06 3.4E-11 79.8 4.7 59 216-275 61-122 (364)
143 cd01890 LepA LepA subfamily. 98.2 1.2E-05 2.6E-10 70.6 10.3 92 104-199 75-174 (179)
144 smart00178 SAR Sar1p-like memb 98.2 2.2E-06 4.8E-11 76.4 5.5 55 217-273 17-72 (184)
145 smart00175 RAB Rab subfamily o 98.2 2.1E-06 4.6E-11 74.0 5.1 54 218-272 1-59 (164)
146 PTZ00327 eukaryotic translatio 98.2 1.2E-05 2.6E-10 81.8 11.2 97 103-200 124-231 (460)
147 PRK13768 GTPase; Provisional 98.2 1.1E-05 2.3E-10 76.1 10.1 117 82-201 91-246 (253)
148 cd01898 Obg Obg subfamily. Th 98.2 5.8E-06 1.3E-10 71.9 7.7 89 111-199 69-168 (170)
149 cd04138 H_N_K_Ras_like H-Ras/N 98.2 2.1E-06 4.5E-11 73.7 4.8 54 218-273 2-60 (162)
150 cd04137 RheB Rheb (Ras Homolog 98.2 1.8E-06 3.9E-11 76.2 4.4 54 218-273 2-60 (180)
151 TIGR03156 GTP_HflX GTP-binding 98.2 1.9E-05 4E-10 78.0 11.9 94 102-199 250-349 (351)
152 COG0486 ThdF Predicted GTPase 98.2 7.2E-06 1.6E-10 81.8 8.8 89 111-202 287-376 (454)
153 TIGR02729 Obg_CgtA Obg family 98.2 6.9E-06 1.5E-10 80.3 8.7 90 110-199 225-326 (329)
154 PRK00089 era GTPase Era; Revie 98.2 4.1E-05 8.8E-10 73.4 13.8 113 87-202 52-171 (292)
155 PRK09866 hypothetical protein; 98.2 3.1E-05 6.7E-10 80.5 13.6 90 110-199 248-350 (741)
156 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.2 2.8E-06 6.2E-11 73.8 5.3 55 218-273 3-62 (166)
157 cd01864 Rab19 Rab19 subfamily. 98.1 4.1E-06 8.9E-11 72.8 6.2 55 218-272 4-62 (165)
158 cd00881 GTP_translation_factor 98.1 2.1E-05 4.6E-10 69.2 10.7 104 87-199 61-184 (189)
159 cd04109 Rab28 Rab28 subfamily. 98.1 3.2E-06 6.9E-11 77.4 5.3 53 219-272 2-60 (215)
160 cd01862 Rab7 Rab7 subfamily. 98.1 3.2E-06 6.8E-11 73.6 5.1 53 219-272 2-59 (172)
161 cd04159 Arl10_like Arl10-like 98.1 3.6E-06 7.9E-11 71.5 5.3 53 220-273 2-55 (159)
162 cd04113 Rab4 Rab4 subfamily. 98.1 3.2E-06 7E-11 73.0 5.0 53 219-272 2-59 (161)
163 smart00173 RAS Ras subfamily o 98.1 2.4E-06 5.3E-11 73.9 4.1 54 219-274 2-60 (164)
164 cd04136 Rap_like Rap-like subf 98.1 2.6E-06 5.6E-11 73.5 4.3 54 218-273 2-60 (163)
165 cd04106 Rab23_lke Rab23-like s 98.1 3.6E-06 7.8E-11 72.6 5.1 53 219-272 2-61 (162)
166 cd04151 Arl1 Arl1 subfamily. 98.1 3.6E-06 7.8E-11 72.7 5.0 53 219-273 1-54 (158)
167 cd04118 Rab24 Rab24 subfamily. 98.1 4.7E-06 1E-10 74.5 5.8 54 219-273 2-61 (193)
168 cd04175 Rap1 Rap1 subgroup. T 98.1 3.5E-06 7.5E-11 73.1 4.7 54 218-273 2-60 (164)
169 TIGR02528 EutP ethanolamine ut 98.1 2.3E-06 5.1E-11 72.4 3.4 44 219-272 2-45 (142)
170 KOG2486 Predicted GTPase [Gene 98.1 3.6E-06 7.8E-11 78.6 4.8 57 216-272 135-193 (320)
171 cd04149 Arf6 Arf6 subfamily. 98.1 5.1E-06 1.1E-10 73.0 5.5 55 217-273 9-64 (168)
172 cd00879 Sar1 Sar1 subfamily. 98.1 5E-06 1.1E-10 74.0 5.6 54 217-272 19-73 (190)
173 cd01865 Rab3 Rab3 subfamily. 98.1 6.4E-06 1.4E-10 71.7 6.1 55 218-273 2-61 (165)
174 cd01895 EngA2 EngA2 subfamily. 98.1 3.5E-05 7.6E-10 66.5 10.8 84 116-199 80-172 (174)
175 TIGR00487 IF-2 translation ini 98.1 4.5E-06 9.8E-11 87.4 5.7 58 215-273 85-146 (587)
176 cd01893 Miro1 Miro1 subfamily. 98.1 3.7E-06 8E-11 73.3 4.3 53 219-273 2-58 (166)
177 cd04123 Rab21 Rab21 subfamily. 98.1 5E-06 1.1E-10 71.3 5.1 53 219-272 2-59 (162)
178 cd00876 Ras Ras family. The R 98.1 3.2E-06 7E-11 72.3 3.8 54 219-274 1-59 (160)
179 cd04163 Era Era subfamily. Er 98.1 4.1E-05 9E-10 65.3 10.8 111 86-199 49-166 (168)
180 PRK12735 elongation factor Tu; 98.1 5.5E-06 1.2E-10 83.0 6.0 57 216-272 11-85 (396)
181 PRK12299 obgE GTPase CgtA; Rev 98.1 1.6E-05 3.6E-10 77.8 9.2 92 110-201 226-327 (335)
182 cd04142 RRP22 RRP22 subfamily. 98.1 3.5E-06 7.5E-11 76.3 4.1 54 219-273 2-60 (198)
183 cd00157 Rho Rho (Ras homology) 98.1 5.7E-06 1.2E-10 71.9 5.2 56 218-274 1-60 (171)
184 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.1 7.1E-06 1.5E-10 73.0 5.9 54 217-272 3-62 (183)
185 PRK12296 obgE GTPase CgtA; Rev 98.1 2.8E-05 6.1E-10 79.6 10.9 91 112-202 228-340 (500)
186 cd04177 RSR1 RSR1 subgroup. R 98.0 7.4E-06 1.6E-10 71.5 5.9 54 218-273 2-60 (168)
187 cd01886 EF-G Elongation factor 98.0 4.6E-06 9.9E-11 79.3 4.8 56 219-274 1-76 (270)
188 cd04140 ARHI_like ARHI subfami 98.0 5.2E-06 1.1E-10 72.3 4.7 55 218-274 2-61 (165)
189 cd04112 Rab26 Rab26 subfamily. 98.0 7.1E-06 1.5E-10 73.5 5.6 53 219-272 2-60 (191)
190 cd04164 trmE TrmE (MnmE, ThdF, 98.0 2.7E-05 5.9E-10 66.2 8.9 82 113-199 73-154 (157)
191 cd04161 Arl2l1_Arl13_like Arl2 98.0 6.2E-06 1.4E-10 72.2 4.9 52 219-272 1-53 (167)
192 cd00880 Era_like Era (E. coli 98.0 0.0001 2.2E-09 62.0 11.6 110 87-199 44-161 (163)
193 PRK15494 era GTPase Era; Provi 98.0 4.5E-05 9.8E-10 74.9 10.7 92 111-203 122-217 (339)
194 PRK10512 selenocysteinyl-tRNA- 98.0 5.1E-05 1.1E-09 80.1 11.6 99 103-202 58-166 (614)
195 cd04158 ARD1 ARD1 subfamily. 98.0 9.4E-06 2E-10 71.1 5.2 51 219-273 1-54 (169)
196 cd04114 Rab30 Rab30 subfamily. 98.0 1.1E-05 2.3E-10 70.2 5.4 56 217-273 7-67 (169)
197 TIGR00475 selB selenocysteine- 98.0 5.5E-05 1.2E-09 79.5 11.6 99 104-203 58-167 (581)
198 PRK05306 infB translation init 98.0 7.5E-06 1.6E-10 88.1 5.2 59 214-273 287-348 (787)
199 cd04122 Rab14 Rab14 subfamily. 98.0 1.5E-05 3.2E-10 69.4 6.2 54 218-273 3-62 (166)
200 cd04125 RabA_like RabA-like su 98.0 1.2E-05 2.6E-10 71.6 5.8 55 219-273 2-60 (188)
201 cd04135 Tc10 TC10 subfamily. 98.0 1.3E-05 2.9E-10 70.0 5.9 53 219-273 2-59 (174)
202 PRK12298 obgE GTPase CgtA; Rev 98.0 2.7E-05 5.9E-10 77.8 8.7 93 110-202 227-333 (390)
203 cd04101 RabL4 RabL4 (Rab-like4 98.0 1.2E-05 2.6E-10 69.5 5.4 54 219-272 2-62 (164)
204 TIGR03680 eif2g_arch translati 97.9 6.3E-05 1.4E-09 75.7 11.0 97 103-200 87-194 (406)
205 TIGR00475 selB selenocysteine- 97.9 9.1E-06 2E-10 85.3 5.1 54 219-272 2-60 (581)
206 cd04124 RabL2 RabL2 subfamily. 97.9 1.6E-05 3.4E-10 69.1 5.8 56 218-273 1-60 (161)
207 cd04116 Rab9 Rab9 subfamily. 97.9 1.3E-05 2.9E-10 69.8 5.4 55 217-272 5-64 (170)
208 cd01879 FeoB Ferrous iron tran 97.9 3.1E-05 6.7E-10 66.2 7.5 80 119-200 73-155 (158)
209 cd04110 Rab35 Rab35 subfamily. 97.9 1.7E-05 3.8E-10 71.5 6.1 57 217-273 6-66 (199)
210 PF05049 IIGP: Interferon-indu 97.9 1.2E-05 2.5E-10 79.4 5.1 60 217-277 35-101 (376)
211 cd01878 HflX HflX subfamily. 97.9 0.00017 3.7E-09 65.1 12.4 82 114-198 114-201 (204)
212 cd04144 Ras2 Ras2 subfamily. 97.9 1.3E-05 2.8E-10 71.8 5.0 53 219-273 1-58 (190)
213 cd01884 EF_Tu EF-Tu subfamily. 97.9 0.00011 2.4E-09 66.4 11.2 87 103-190 72-171 (195)
214 cd01891 TypA_BipA TypA (tyrosi 97.9 4.6E-05 1E-09 68.4 8.5 90 104-194 73-174 (194)
215 PLN03127 Elongation factor Tu; 97.9 1.3E-05 2.9E-10 81.4 5.5 58 216-273 60-135 (447)
216 cd04176 Rap2 Rap2 subgroup. T 97.9 1.9E-05 4E-10 68.3 5.8 54 218-273 2-60 (163)
217 cd01881 Obg_like The Obg-like 97.9 2.3E-05 5E-10 68.3 6.0 86 113-198 67-173 (176)
218 cd04124 RabL2 RabL2 subfamily. 97.9 6E-05 1.3E-09 65.4 8.5 90 109-199 61-155 (161)
219 PRK00007 elongation factor G; 97.9 1.5E-05 3.3E-10 85.4 5.7 58 217-274 10-87 (693)
220 CHL00189 infB translation init 97.9 1.2E-05 2.6E-10 85.8 4.9 57 215-272 242-305 (742)
221 cd04115 Rab33B_Rab33A Rab33B/R 97.9 2.5E-05 5.5E-10 68.3 6.1 55 218-273 3-62 (170)
222 KOG1547 Septin CDC10 and relat 97.9 1.4E-05 3.1E-10 73.2 4.6 60 215-274 44-116 (336)
223 cd04170 EF-G_bact Elongation f 97.9 1E-05 2.3E-10 76.6 3.8 22 219-240 1-22 (268)
224 PRK00049 elongation factor Tu; 97.9 1.7E-05 3.8E-10 79.4 5.6 58 216-273 11-86 (396)
225 cd04150 Arf1_5_like Arf1-Arf5- 97.9 2.1E-05 4.6E-10 68.3 5.2 54 218-273 1-55 (159)
226 cd01887 IF2_eIF5B IF2/eIF5B (i 97.9 0.00014 3E-09 62.8 10.4 106 87-201 49-165 (168)
227 PTZ00133 ADP-ribosylation fact 97.9 2.4E-05 5.2E-10 69.7 5.6 55 217-273 17-72 (182)
228 cd04160 Arfrp1 Arfrp1 subfamil 97.8 4.4E-05 9.5E-10 66.1 7.1 102 87-197 49-164 (167)
229 PF00735 Septin: Septin; Inte 97.8 1.8E-05 4E-10 75.6 4.9 58 217-274 4-75 (281)
230 cd00877 Ran Ran (Ras-related n 97.8 2.9E-05 6.4E-10 67.9 5.9 55 219-273 2-60 (166)
231 PLN03110 Rab GTPase; Provision 97.8 2.9E-05 6.3E-10 71.2 6.0 56 217-273 12-72 (216)
232 cd04132 Rho4_like Rho4-like su 97.8 2.7E-05 5.8E-10 69.1 5.6 54 218-272 1-59 (187)
233 PRK04000 translation initiatio 97.8 0.0001 2.2E-09 74.4 10.3 96 104-200 93-199 (411)
234 cd04154 Arl2 Arl2 subfamily. 97.8 5.3E-05 1.1E-09 66.5 7.3 102 87-197 57-170 (173)
235 PRK05291 trmE tRNA modificatio 97.8 0.00012 2.5E-09 74.7 10.7 81 114-200 288-368 (449)
236 cd04151 Arl1 Arl1 subfamily. 97.8 5.7E-05 1.2E-09 65.1 7.3 84 114-197 60-155 (158)
237 cd04146 RERG_RasL11_like RERG/ 97.8 2.2E-05 4.8E-10 68.1 4.8 54 219-274 1-59 (165)
238 TIGR00491 aIF-2 translation in 97.8 1.7E-05 3.6E-10 83.2 4.5 36 217-254 4-40 (590)
239 cd04127 Rab27A Rab27a subfamil 97.8 2.8E-05 6.2E-10 68.4 5.3 24 218-241 5-28 (180)
240 cd04156 ARLTS1 ARLTS1 subfamil 97.8 4.2E-05 9.2E-10 65.8 6.2 102 88-198 44-158 (160)
241 cd04111 Rab39 Rab39 subfamily. 97.8 2.7E-05 5.9E-10 71.1 5.2 55 218-273 3-63 (211)
242 cd04107 Rab32_Rab38 Rab38/Rab3 97.8 2.9E-05 6.3E-10 70.1 5.3 53 219-272 2-60 (201)
243 PTZ00369 Ras-like protein; Pro 97.8 2.3E-05 5.1E-10 70.0 4.4 56 217-273 5-64 (189)
244 cd04101 RabL4 RabL4 (Rab-like4 97.8 0.00011 2.5E-09 63.3 8.6 104 87-199 51-161 (164)
245 cd04157 Arl6 Arl6 subfamily. 97.8 8E-05 1.7E-09 64.0 7.6 93 104-197 53-159 (162)
246 cd04168 TetM_like Tet(M)-like 97.8 2.3E-05 4.9E-10 73.1 4.4 56 219-274 1-76 (237)
247 TIGR00484 EF-G translation elo 97.8 2.5E-05 5.5E-10 83.7 5.3 57 218-274 11-87 (689)
248 PRK00454 engB GTP-binding prot 97.8 0.00028 6.1E-09 62.9 11.3 85 118-202 104-194 (196)
249 PRK05506 bifunctional sulfate 97.8 2.4E-05 5.1E-10 83.2 4.9 26 217-242 24-49 (632)
250 PRK12736 elongation factor Tu; 97.8 3.1E-05 6.6E-10 77.6 5.4 57 216-272 11-85 (394)
251 PLN03126 Elongation factor Tu; 97.8 3.8E-05 8.2E-10 78.7 6.0 58 216-273 80-155 (478)
252 cd04159 Arl10_like Arl10-like 97.8 0.0001 2.2E-09 62.5 7.7 94 104-198 52-157 (159)
253 PF02421 FeoB_N: Ferrous iron 97.8 1.3E-05 2.8E-10 69.9 2.0 77 119-197 77-156 (156)
254 PRK04004 translation initiatio 97.7 3.5E-05 7.7E-10 80.9 5.7 37 216-254 5-42 (586)
255 TIGR03598 GTPase_YsxC ribosome 97.7 0.00019 4.2E-09 63.5 9.6 72 119-190 99-178 (179)
256 cd04108 Rab36_Rab34 Rab34/Rab3 97.7 4.1E-05 8.8E-10 67.4 5.2 54 219-273 2-60 (170)
257 smart00177 ARF ARF-like small 97.7 4.6E-05 9.9E-10 67.3 5.6 55 217-273 13-68 (175)
258 TIGR00485 EF-Tu translation el 97.7 4E-05 8.8E-10 76.8 5.8 57 217-273 12-86 (394)
259 cd04166 CysN_ATPS CysN_ATPS su 97.7 0.00015 3.4E-09 66.0 9.2 88 104-192 85-184 (208)
260 PLN03108 Rab family protein; P 97.7 5.8E-05 1.3E-09 68.8 6.4 57 217-273 6-66 (210)
261 cd01862 Rab7 Rab7 subfamily. 97.7 0.00015 3.2E-09 62.9 8.6 96 104-200 57-165 (172)
262 cd04147 Ras_dva Ras-dva subfam 97.7 3.9E-05 8.5E-10 69.1 5.0 53 219-273 1-58 (198)
263 smart00175 RAB Rab subfamily o 97.7 0.00018 4E-09 61.8 8.9 93 104-199 57-159 (164)
264 smart00174 RHO Rho (Ras homolo 97.7 5.1E-05 1.1E-09 66.3 5.3 52 220-273 1-57 (174)
265 cd01870 RhoA_like RhoA-like su 97.7 4E-05 8.6E-10 67.0 4.6 52 219-272 3-59 (175)
266 cd04148 RGK RGK subfamily. Th 97.7 4.3E-05 9.4E-10 70.4 5.0 55 219-273 2-61 (221)
267 TIGR02034 CysN sulfate adenyly 97.7 0.00028 6E-09 71.1 11.2 88 104-192 88-187 (406)
268 cd01897 NOG NOG1 is a nucleola 97.7 0.00014 3.1E-09 63.0 7.9 79 120-198 79-164 (168)
269 cd00878 Arf_Arl Arf (ADP-ribos 97.7 0.0001 2.3E-09 63.2 6.9 102 87-197 42-155 (158)
270 PF08477 Miro: Miro-like prote 97.7 5.2E-05 1.1E-09 62.0 4.8 56 219-274 1-62 (119)
271 COG4917 EutP Ethanolamine util 97.7 0.00027 5.9E-09 58.6 8.8 92 108-200 52-144 (148)
272 cd01883 EF1_alpha Eukaryotic e 97.7 0.00019 4.1E-09 66.0 8.8 88 103-191 84-194 (219)
273 PRK12297 obgE GTPase CgtA; Rev 97.7 0.00016 3.6E-09 72.8 9.0 89 111-201 227-326 (424)
274 cd01882 BMS1 Bms1. Bms1 is an 97.7 5.3E-05 1.2E-09 70.0 5.0 57 215-273 37-94 (225)
275 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.7 0.00016 3.4E-09 64.3 7.9 104 87-199 51-167 (183)
276 cd04126 Rab20 Rab20 subfamily. 97.7 5.6E-05 1.2E-09 69.7 5.0 53 219-273 2-55 (220)
277 cd04117 Rab15 Rab15 subfamily. 97.7 8.1E-05 1.8E-09 64.6 5.8 54 219-273 2-60 (161)
278 cd04169 RF3 RF3 subfamily. Pe 97.7 4.8E-05 1.1E-09 72.2 4.6 22 219-240 4-25 (267)
279 PRK12739 elongation factor G; 97.7 4.1E-05 9E-10 82.1 4.6 57 217-273 8-84 (691)
280 PRK10512 selenocysteinyl-tRNA- 97.6 6.3E-05 1.4E-09 79.4 5.6 54 219-272 2-61 (614)
281 PLN00223 ADP-ribosylation fact 97.6 8.6E-05 1.9E-09 66.1 5.8 54 217-272 17-71 (181)
282 cd04105 SR_beta Signal recogni 97.6 7E-05 1.5E-09 68.1 5.2 53 219-273 2-59 (203)
283 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 97.6 0.00026 5.6E-09 61.4 8.5 92 104-198 59-160 (166)
284 PRK05433 GTP-binding protein L 97.6 0.00034 7.4E-09 73.8 10.9 97 104-201 82-183 (600)
285 cd04145 M_R_Ras_like M-Ras/R-R 97.6 0.00022 4.8E-09 61.3 8.0 90 109-198 62-160 (164)
286 cd00882 Ras_like_GTPase Ras-li 97.6 4.5E-05 9.7E-10 63.2 3.4 52 222-274 1-57 (157)
287 cd04112 Rab26 Rab26 subfamily. 97.6 0.00051 1.1E-08 61.4 10.5 97 104-201 58-162 (191)
288 COG0218 Predicted GTPase [Gene 97.6 0.00078 1.7E-08 60.6 11.5 94 107-200 90-195 (200)
289 cd04150 Arf1_5_like Arf1-Arf5- 97.6 0.00015 3.2E-09 62.9 6.8 102 87-197 43-156 (159)
290 PF10662 PduV-EutP: Ethanolami 97.6 4.1E-05 9E-10 65.5 3.1 45 219-273 3-47 (143)
291 cd04106 Rab23_lke Rab23-like s 97.6 0.00028 6E-09 60.7 8.3 101 87-198 50-159 (162)
292 cd04130 Wrch_1 Wrch-1 subfamil 97.6 8.6E-05 1.9E-09 65.1 5.1 54 218-273 1-59 (173)
293 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.6 0.00013 2.8E-09 64.3 6.1 54 218-273 3-61 (172)
294 cd01876 YihA_EngB The YihA (En 97.6 0.0008 1.7E-08 57.4 11.0 83 118-200 79-169 (170)
295 PLN03071 GTP-binding nuclear p 97.6 0.00013 2.9E-09 67.0 6.4 58 216-273 12-73 (219)
296 COG1100 GTPase SAR1 and relate 97.6 9.6E-05 2.1E-09 67.2 5.4 55 218-273 6-65 (219)
297 PRK12736 elongation factor Tu; 97.6 0.00056 1.2E-08 68.6 11.3 84 103-187 82-178 (394)
298 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.6 0.00035 7.7E-09 61.4 8.8 102 87-197 58-171 (174)
299 cd01861 Rab6 Rab6 subfamily. 97.6 0.00036 7.9E-09 59.9 8.5 95 104-199 57-159 (161)
300 TIGR01393 lepA GTP-binding pro 97.6 0.00042 9.2E-09 73.0 10.5 97 104-201 78-179 (595)
301 cd04139 RalA_RalB RalA/RalB su 97.6 0.00045 9.7E-09 59.2 8.9 89 110-198 61-158 (164)
302 TIGR00483 EF-1_alpha translati 97.5 0.00011 2.5E-09 74.3 5.8 57 216-272 6-95 (426)
303 PRK05124 cysN sulfate adenylyl 97.5 9.6E-05 2.1E-09 75.8 5.3 25 216-240 26-50 (474)
304 cd04162 Arl9_Arfrp2_like Arl9/ 97.5 0.0001 2.2E-09 64.3 4.7 52 220-273 2-55 (164)
305 PRK05124 cysN sulfate adenylyl 97.5 0.00042 9.1E-09 71.1 9.9 91 103-194 114-217 (474)
306 PF00350 Dynamin_N: Dynamin fa 97.5 7.9E-05 1.7E-09 64.9 3.9 30 220-249 1-30 (168)
307 TIGR00483 EF-1_alpha translati 97.5 0.0004 8.6E-09 70.3 9.5 88 104-192 93-197 (426)
308 PF00009 GTP_EFTU: Elongation 97.5 4.1E-05 8.9E-10 68.5 2.1 57 217-273 3-81 (188)
309 cd01892 Miro2 Miro2 subfamily. 97.5 0.00019 4E-09 63.0 6.2 57 216-273 3-65 (169)
310 cd01867 Rab8_Rab10_Rab13_like 97.5 0.00055 1.2E-08 59.5 9.1 92 104-198 60-161 (167)
311 PRK05506 bifunctional sulfate 97.5 0.00056 1.2E-08 72.8 10.7 88 104-192 112-211 (632)
312 cd00154 Rab Rab family. Rab G 97.5 0.00044 9.4E-09 58.4 8.2 101 88-197 49-157 (159)
313 PRK11058 GTPase HflX; Provisio 97.5 0.00065 1.4E-08 68.7 10.6 88 111-201 267-361 (426)
314 CHL00071 tufA elongation facto 97.5 0.00067 1.5E-08 68.4 10.7 85 103-188 82-179 (409)
315 cd04127 Rab27A Rab27a subfamil 97.5 0.00044 9.4E-09 60.7 8.3 103 88-199 63-174 (180)
316 KOG1487 GTP-binding protein DR 97.5 0.00011 2.3E-09 68.3 4.3 57 218-275 60-119 (358)
317 cd04108 Rab36_Rab34 Rab34/Rab3 97.5 0.00053 1.1E-08 60.2 8.7 93 109-201 61-164 (170)
318 PRK12317 elongation factor 1-a 97.5 0.00042 9.2E-09 70.1 9.2 89 104-193 92-196 (425)
319 cd04134 Rho3 Rho3 subfamily. 97.5 0.0002 4.3E-09 64.0 6.0 54 219-273 2-59 (189)
320 cd04149 Arf6 Arf6 subfamily. 97.5 0.00026 5.6E-09 62.1 6.6 102 87-197 52-165 (168)
321 smart00177 ARF ARF-like small 97.5 0.00031 6.7E-09 61.9 7.1 103 87-198 56-170 (175)
322 cd04119 RJL RJL (RabJ-Like) su 97.5 0.00044 9.6E-09 59.4 7.8 88 111-198 63-163 (168)
323 cd01883 EF1_alpha Eukaryotic e 97.5 9.7E-05 2.1E-09 67.9 3.8 55 219-273 1-88 (219)
324 cd04132 Rho4_like Rho4-like su 97.5 0.0011 2.3E-08 58.8 10.4 85 116-200 68-165 (187)
325 cd04110 Rab35 Rab35 subfamily. 97.5 0.00059 1.3E-08 61.5 8.8 86 112-199 70-164 (199)
326 PTZ00099 rab6; Provisional 97.5 0.0005 1.1E-08 61.1 8.1 107 86-201 27-141 (176)
327 cd01865 Rab3 Rab3 subfamily. 97.5 0.00083 1.8E-08 58.3 9.3 87 111-199 64-160 (165)
328 cd01893 Miro1 Miro1 subfamily. 97.4 0.0004 8.8E-09 60.4 7.3 88 112-199 62-161 (166)
329 COG5019 CDC3 Septin family pro 97.4 0.00016 3.4E-09 70.3 5.0 60 215-274 21-94 (373)
330 cd01874 Cdc42 Cdc42 subfamily. 97.4 0.00021 4.6E-09 63.1 5.3 54 218-273 2-60 (175)
331 PLN00223 ADP-ribosylation fact 97.4 0.00044 9.5E-09 61.5 7.3 102 87-197 60-173 (181)
332 COG0536 Obg Predicted GTPase [ 97.4 0.0004 8.7E-09 67.0 7.3 92 113-204 230-335 (369)
333 PRK00049 elongation factor Tu; 97.4 0.0011 2.3E-08 66.6 10.8 85 103-188 82-179 (396)
334 TIGR00485 EF-Tu translation el 97.4 0.0018 3.9E-08 64.9 12.5 85 103-188 82-179 (394)
335 cd01864 Rab19 Rab19 subfamily. 97.4 0.00095 2.1E-08 57.8 9.2 101 88-197 52-161 (165)
336 cd04158 ARD1 ARD1 subfamily. 97.4 0.00029 6.3E-09 61.6 5.9 89 110-198 56-157 (169)
337 cd04113 Rab4 Rab4 subfamily. 97.4 0.00088 1.9E-08 57.6 8.8 101 88-197 49-157 (161)
338 cd01871 Rac1_like Rac1-like su 97.4 0.00022 4.9E-09 62.9 5.1 53 218-272 2-59 (174)
339 PRK04213 GTP-binding protein; 97.4 0.0018 3.9E-08 58.1 11.0 82 117-199 87-189 (201)
340 cd04143 Rhes_like Rhes_like su 97.4 0.00014 3.1E-09 68.1 4.0 53 219-273 2-59 (247)
341 PRK12735 elongation factor Tu; 97.4 0.0011 2.4E-08 66.5 10.5 97 103-200 82-201 (396)
342 cd04121 Rab40 Rab40 subfamily. 97.4 0.00064 1.4E-08 61.1 7.9 91 108-198 66-163 (189)
343 smart00173 RAS Ras subfamily o 97.4 0.00073 1.6E-08 58.2 8.1 86 113-198 64-158 (164)
344 cd04118 Rab24 Rab24 subfamily. 97.4 0.00053 1.2E-08 61.1 7.4 87 115-201 68-165 (193)
345 cd04146 RERG_RasL11_like RERG/ 97.4 0.00039 8.5E-09 60.2 6.3 85 114-198 65-160 (165)
346 CHL00189 infB translation init 97.4 0.0011 2.5E-08 71.0 10.9 98 103-201 302-409 (742)
347 KOG1489 Predicted GTP-binding 97.4 0.00065 1.4E-08 64.9 8.0 86 113-199 267-364 (366)
348 cd04167 Snu114p Snu114p subfam 97.4 0.00012 2.5E-09 67.0 3.0 22 219-240 2-23 (213)
349 cd01868 Rab11_like Rab11-like. 97.4 0.00082 1.8E-08 58.0 8.2 88 109-198 64-161 (165)
350 cd04138 H_N_K_Ras_like H-Ras/N 97.4 0.0006 1.3E-08 58.2 7.3 84 114-197 66-157 (162)
351 TIGR02034 CysN sulfate adenyly 97.4 0.00016 3.4E-09 72.8 4.2 54 219-272 2-90 (406)
352 cd04109 Rab28 Rab28 subfamily. 97.4 0.00074 1.6E-08 61.7 8.2 90 110-199 63-163 (215)
353 KOG2655 Septin family protein 97.4 0.00019 4.2E-09 70.1 4.4 60 215-274 19-91 (366)
354 cd04123 Rab21 Rab21 subfamily. 97.4 0.00092 2E-08 57.1 8.3 84 115-198 67-158 (162)
355 cd01860 Rab5_related Rab5-rela 97.3 0.0012 2.6E-08 56.7 9.0 94 104-198 58-159 (163)
356 cd04107 Rab32_Rab38 Rab38/Rab3 97.3 0.00095 2.1E-08 60.2 8.6 89 111-199 64-165 (201)
357 cd01892 Miro2 Miro2 subfamily. 97.3 0.0002 4.3E-09 62.8 3.9 85 116-200 73-164 (169)
358 smart00178 SAR Sar1p-like memb 97.3 0.00052 1.1E-08 61.1 6.7 102 87-197 60-180 (184)
359 cd04114 Rab30 Rab30 subfamily. 97.3 0.00075 1.6E-08 58.4 7.5 94 104-198 64-165 (169)
360 cd01866 Rab2 Rab2 subfamily. 97.3 0.0011 2.4E-08 57.7 8.5 99 88-197 53-161 (168)
361 cd00877 Ran Ran (Ras-related n 97.3 0.00046 1E-08 60.2 5.9 83 116-198 68-155 (166)
362 cd01885 EF2 EF2 (for archaea a 97.3 0.00033 7.1E-09 64.7 5.0 23 219-241 2-24 (222)
363 smart00176 RAN Ran (Ras-relate 97.3 0.00074 1.6E-08 61.3 7.2 85 114-198 61-150 (200)
364 smart00053 DYNc Dynamin, GTPas 97.3 0.0004 8.6E-09 64.8 5.4 71 218-288 27-151 (240)
365 cd04128 Spg1 Spg1p. Spg1p (se 97.3 0.00054 1.2E-08 61.0 6.1 54 219-273 2-60 (182)
366 cd04136 Rap_like Rap-like subf 97.3 0.0009 2E-08 57.4 7.3 84 115-198 67-159 (163)
367 cd04122 Rab14 Rab14 subfamily. 97.3 0.00091 2E-08 58.0 7.3 99 87-196 50-158 (166)
368 PTZ00133 ADP-ribosylation fact 97.3 0.00067 1.4E-08 60.3 6.6 103 87-198 60-174 (182)
369 PTZ00132 GTP-binding nuclear p 97.3 0.00054 1.2E-08 62.5 6.0 56 217-272 9-68 (215)
370 cd00876 Ras Ras family. The R 97.3 0.0017 3.7E-08 55.3 8.8 95 103-198 54-157 (160)
371 COG2895 CysN GTPases - Sulfate 97.2 0.00063 1.4E-08 65.8 6.5 95 88-191 86-192 (431)
372 PLN00043 elongation factor 1-a 97.2 0.0014 3E-08 66.8 9.4 88 103-191 92-202 (447)
373 cd00879 Sar1 Sar1 subfamily. 97.2 0.00085 1.9E-08 59.5 7.1 94 104-198 71-187 (190)
374 TIGR00487 IF-2 translation ini 97.2 0.0012 2.6E-08 69.4 9.1 95 104-199 143-247 (587)
375 PLN03118 Rab family protein; P 97.2 0.0022 4.8E-08 58.2 9.8 104 88-200 62-175 (211)
376 TIGR03680 eif2g_arch translati 97.2 0.00028 6E-09 71.1 4.2 24 217-240 4-27 (406)
377 PTZ00141 elongation factor 1- 97.2 0.0015 3.2E-08 66.6 9.4 88 104-192 93-203 (446)
378 cd01863 Rab18 Rab18 subfamily. 97.2 0.0012 2.6E-08 56.7 7.5 101 88-197 49-157 (161)
379 cd04126 Rab20 Rab20 subfamily. 97.2 0.0013 2.9E-08 60.6 8.2 84 115-198 62-186 (220)
380 cd00157 Rho Rho (Ras homology) 97.2 0.00038 8.2E-09 60.3 4.2 83 116-198 67-169 (171)
381 PF00071 Ras: Ras family; Int 97.2 0.00076 1.6E-08 58.0 6.1 53 219-272 1-58 (162)
382 cd04128 Spg1 Spg1p. Spg1p (se 97.2 0.0013 2.9E-08 58.5 7.8 103 87-198 48-162 (182)
383 KOG1423 Ras-like GTPase ERA [C 97.2 0.0016 3.5E-08 62.0 8.5 90 113-202 148-271 (379)
384 cd04140 ARHI_like ARHI subfami 97.2 0.001 2.3E-08 57.6 6.9 85 116-200 68-163 (165)
385 PLN03127 Elongation factor Tu; 97.2 0.0025 5.4E-08 65.0 10.5 61 103-164 131-194 (447)
386 cd04131 Rnd Rnd subfamily. Th 97.2 0.00063 1.4E-08 60.4 5.5 54 218-272 2-59 (178)
387 TIGR00491 aIF-2 translation in 97.2 0.0032 6.9E-08 66.2 11.5 97 104-201 77-215 (590)
388 cd04147 Ras_dva Ras-dva subfam 97.2 0.0017 3.7E-08 58.4 8.2 84 116-199 66-160 (198)
389 cd04175 Rap1 Rap1 subgroup. T 97.2 0.0011 2.4E-08 57.2 6.7 88 111-198 63-159 (164)
390 TIGR01393 lepA GTP-binding pro 97.2 0.00046 9.9E-09 72.8 5.0 57 218-274 4-82 (595)
391 PRK10218 GTP-binding protein; 97.1 0.00058 1.3E-08 71.9 5.7 57 218-274 6-80 (607)
392 PRK05306 infB translation init 97.1 0.0015 3.3E-08 70.6 8.9 97 103-200 344-450 (787)
393 TIGR01394 TypA_BipA GTP-bindin 97.1 0.0021 4.5E-08 67.8 9.7 85 103-188 71-167 (594)
394 PLN03110 Rab GTPase; Provision 97.1 0.0032 7E-08 57.6 9.8 100 88-198 61-170 (216)
395 cd04120 Rab12 Rab12 subfamily. 97.1 0.0018 3.9E-08 58.8 8.1 102 87-197 48-158 (202)
396 smart00174 RHO Rho (Ras homolo 97.1 0.0019 4E-08 56.3 7.9 83 116-198 65-168 (174)
397 cd04129 Rho2 Rho2 subfamily. 97.1 0.00076 1.7E-08 60.0 5.5 54 219-273 3-60 (187)
398 cd00882 Ras_like_GTPase Ras-li 97.1 0.0021 4.6E-08 52.9 7.9 102 87-197 44-155 (157)
399 cd04144 Ras2 Ras2 subfamily. 97.1 0.0024 5.2E-08 57.0 8.6 88 111-198 61-159 (190)
400 PTZ00369 Ras-like protein; Pro 97.1 0.0018 3.9E-08 57.7 7.7 87 111-197 67-162 (189)
401 cd04162 Arl9_Arfrp2_like Arl9/ 97.1 0.00077 1.7E-08 58.7 5.2 101 87-196 43-160 (164)
402 TIGR00437 feoB ferrous iron tr 97.1 0.0019 4.1E-08 68.1 8.9 80 119-200 71-153 (591)
403 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.1 0.0021 4.6E-08 56.5 7.8 84 114-197 67-159 (172)
404 cd04115 Rab33B_Rab33A Rab33B/R 97.1 0.0032 6.9E-08 54.9 8.9 88 114-201 69-165 (170)
405 KOG1249 Predicted GTPases [Gen 97.1 0.00026 5.7E-09 71.6 2.1 83 218-300 310-403 (572)
406 PLN03108 Rab family protein; P 97.1 0.004 8.6E-08 56.7 9.6 90 111-200 69-167 (210)
407 PRK09554 feoB ferrous iron tra 97.1 0.0014 2.9E-08 71.1 7.5 81 119-201 84-167 (772)
408 PLN03071 GTP-binding nuclear p 97.1 0.0011 2.4E-08 60.9 5.9 82 116-197 81-167 (219)
409 cd04121 Rab40 Rab40 subfamily. 97.1 0.00097 2.1E-08 59.9 5.5 56 217-273 6-66 (189)
410 cd04125 RabA_like RabA-like su 97.0 0.0029 6.3E-08 56.2 8.5 90 110-199 62-159 (188)
411 cd04176 Rap2 Rap2 subgroup. T 97.0 0.0013 2.8E-08 56.6 6.0 84 114-197 66-158 (163)
412 TIGR00231 small_GTP small GTP- 97.0 0.0012 2.6E-08 55.3 5.4 52 147-198 108-160 (161)
413 cd04142 RRP22 RRP22 subfamily. 97.0 0.0035 7.6E-08 56.6 8.8 83 116-198 76-170 (198)
414 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.0 0.00081 1.8E-08 62.1 4.6 54 218-272 2-59 (222)
415 COG5257 GCD11 Translation init 97.0 0.0034 7.4E-08 60.2 8.7 99 103-202 93-202 (415)
416 PF00025 Arf: ADP-ribosylation 97.0 0.00071 1.5E-08 59.9 3.9 55 216-272 13-68 (175)
417 cd04155 Arl3 Arl3 subfamily. 97.0 0.0019 4.1E-08 56.2 6.6 102 87-197 57-170 (173)
418 PRK14845 translation initiatio 97.0 0.005 1.1E-07 68.4 11.1 98 104-202 534-673 (1049)
419 PTZ00141 elongation factor 1- 97.0 0.0011 2.4E-08 67.6 5.5 57 217-273 7-96 (446)
420 cd04120 Rab12 Rab12 subfamily. 97.0 0.0012 2.5E-08 60.1 5.2 54 219-273 2-60 (202)
421 TIGR01394 TypA_BipA GTP-bindin 97.0 0.001 2.2E-08 70.1 5.3 56 219-274 3-76 (594)
422 COG3276 SelB Selenocysteine-sp 96.9 0.0059 1.3E-07 60.8 10.2 99 103-202 57-162 (447)
423 cd04102 RabL3 RabL3 (Rab-like3 96.9 0.0016 3.5E-08 59.2 5.7 56 218-273 1-65 (202)
424 cd01888 eIF2_gamma eIF2-gamma 96.9 0.00092 2E-08 60.6 4.1 22 219-240 2-23 (203)
425 cd04117 Rab15 Rab15 subfamily. 96.9 0.0032 6.9E-08 54.5 7.3 88 111-198 63-158 (161)
426 PRK04004 translation initiatio 96.9 0.0078 1.7E-07 63.4 11.1 94 104-198 79-214 (586)
427 TIGR00450 mnmE_trmE_thdF tRNA 96.9 0.0053 1.2E-07 62.5 9.6 79 115-198 277-356 (442)
428 COG0532 InfB Translation initi 96.9 0.0077 1.7E-07 61.4 10.5 97 104-203 63-171 (509)
429 PLN03126 Elongation factor Tu; 96.9 0.0066 1.4E-07 62.4 10.2 85 103-188 151-248 (478)
430 cd04133 Rop_like Rop subfamily 96.8 0.0017 3.7E-08 57.6 5.2 54 218-273 2-60 (176)
431 cd04130 Wrch_1 Wrch-1 subfamil 96.8 0.0015 3.3E-08 57.1 4.8 81 116-196 67-168 (173)
432 KOG1145 Mitochondrial translat 96.8 0.0073 1.6E-07 61.6 10.0 96 104-202 209-316 (683)
433 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 96.8 0.0019 4.1E-08 60.0 5.4 55 217-272 13-71 (232)
434 cd04111 Rab39 Rab39 subfamily. 96.8 0.006 1.3E-07 55.6 8.6 103 88-199 52-163 (211)
435 cd01882 BMS1 Bms1. Bms1 is an 96.8 0.0076 1.7E-07 55.6 9.3 76 112-187 95-181 (225)
436 PTZ00416 elongation factor 2; 96.8 0.0015 3.2E-08 71.6 5.2 36 218-253 20-55 (836)
437 KOG0094 GTPase Rab6/YPT6/Ryh1, 96.8 0.013 2.9E-07 52.4 10.2 120 84-203 53-186 (221)
438 PRK10218 GTP-binding protein; 96.8 0.0062 1.3E-07 64.3 9.5 85 104-189 76-172 (607)
439 KOG0461 Selenocysteine-specifi 96.8 0.0079 1.7E-07 58.2 9.2 96 103-199 77-190 (522)
440 cd01874 Cdc42 Cdc42 subfamily. 96.8 0.0033 7.2E-08 55.4 6.3 83 116-198 68-171 (175)
441 TIGR00503 prfC peptide chain r 96.8 0.0018 4E-08 67.2 5.3 21 218-238 12-32 (527)
442 TIGR00490 aEF-2 translation el 96.7 0.0013 2.7E-08 71.1 4.1 57 218-274 20-98 (720)
443 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 96.7 0.0026 5.6E-08 56.7 5.5 54 217-272 5-63 (182)
444 cd04148 RGK RGK subfamily. Th 96.7 0.005 1.1E-07 56.6 7.5 84 117-200 68-161 (221)
445 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 96.7 0.0083 1.8E-07 55.8 8.9 104 86-198 59-184 (232)
446 cd04116 Rab9 Rab9 subfamily. 96.7 0.0077 1.7E-07 52.2 8.3 102 87-197 53-166 (170)
447 cd04143 Rhes_like Rhes_like su 96.7 0.0084 1.8E-07 56.2 8.8 85 117-201 68-170 (247)
448 KOG0462 Elongation factor-type 96.7 0.003 6.4E-08 64.4 5.7 94 103-197 132-230 (650)
449 PRK00741 prfC peptide chain re 96.7 0.0019 4.2E-08 67.1 4.6 53 219-271 12-88 (526)
450 COG5256 TEF1 Translation elong 96.6 0.0072 1.6E-07 59.8 8.2 89 103-192 92-201 (428)
451 cd01871 Rac1_like Rac1-like su 96.6 0.0046 1E-07 54.5 6.4 82 116-197 68-170 (174)
452 PRK13351 elongation factor G; 96.6 0.002 4.3E-08 69.2 4.7 57 218-274 9-85 (687)
453 cd01875 RhoG RhoG subfamily. 96.6 0.0034 7.4E-08 56.2 5.5 55 218-273 4-62 (191)
454 COG0370 FeoB Fe2+ transport sy 96.6 0.002 4.4E-08 67.3 4.5 83 119-201 80-163 (653)
455 cd04103 Centaurin_gamma Centau 96.6 0.0037 8.1E-08 54.2 5.5 52 219-273 2-58 (158)
456 PLN00023 GTP-binding protein; 96.6 0.0037 8.1E-08 60.7 5.9 56 217-272 21-93 (334)
457 cd01870 RhoA_like RhoA-like su 96.6 0.0045 9.8E-08 53.9 6.1 83 116-198 68-171 (175)
458 cd01875 RhoG RhoG subfamily. 96.6 0.0076 1.6E-07 53.9 7.4 84 116-199 70-174 (191)
459 cd04137 RheB Rheb (Ras Homolog 96.6 0.015 3.2E-07 51.0 9.1 85 116-200 68-161 (180)
460 COG2229 Predicted GTPase [Gene 96.6 0.017 3.8E-07 51.1 9.2 90 103-193 75-169 (187)
461 PLN00116 translation elongatio 96.6 0.0036 7.8E-08 68.7 6.1 25 218-242 20-44 (843)
462 cd01873 RhoBTB RhoBTB subfamil 96.6 0.008 1.7E-07 54.2 7.4 81 117-197 84-191 (195)
463 cd01886 EF-G Elongation factor 96.5 0.01 2.3E-07 56.4 8.5 57 104-161 72-130 (270)
464 cd04161 Arl2l1_Arl13_like Arl2 96.5 0.0065 1.4E-07 53.0 6.6 92 87-187 42-148 (167)
465 PRK07560 elongation factor EF- 96.5 0.0038 8.2E-08 67.6 6.0 23 218-240 21-43 (731)
466 cd01896 DRG The developmentall 96.5 0.0095 2.1E-07 55.3 7.8 47 148-199 177-223 (233)
467 PF09439 SRPRB: Signal recogni 96.5 0.0014 3E-08 58.5 2.1 93 218-312 4-105 (181)
468 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 96.5 0.0078 1.7E-07 53.6 6.9 103 86-197 51-175 (182)
469 cd04135 Tc10 TC10 subfamily. 96.5 0.0089 1.9E-07 52.0 7.1 82 116-197 67-169 (174)
470 PRK09435 membrane ATPase/prote 96.4 0.011 2.4E-07 57.8 8.0 105 82-201 143-259 (332)
471 PRK05433 GTP-binding protein L 96.4 0.0027 5.8E-08 67.1 3.9 57 218-274 8-86 (600)
472 cd04177 RSR1 RSR1 subgroup. R 96.4 0.01 2.2E-07 51.5 6.9 85 113-197 65-159 (168)
473 KOG0073 GTP-binding ADP-ribosy 96.4 0.0055 1.2E-07 53.3 4.9 55 217-272 16-70 (185)
474 cd04131 Rnd Rnd subfamily. Th 96.4 0.012 2.5E-07 52.2 7.2 82 116-197 68-171 (178)
475 PF04670 Gtr1_RagA: Gtr1/RagA 96.3 0.0042 9E-08 57.7 4.3 56 219-274 1-60 (232)
476 PRK04000 translation initiatio 96.3 0.004 8.6E-08 62.8 4.4 40 216-255 8-49 (411)
477 cd01885 EF2 EF2 (for archaea a 96.3 0.013 2.8E-07 54.1 7.5 56 104-160 81-138 (222)
478 cd04134 Rho3 Rho3 subfamily. 96.3 0.0071 1.5E-07 53.9 5.4 84 116-199 67-171 (189)
479 cd04133 Rop_like Rop subfamily 96.3 0.0065 1.4E-07 53.9 5.1 83 116-198 68-169 (176)
480 KOG0394 Ras-related GTPase [Ge 96.3 0.0047 1E-07 54.7 3.8 57 216-273 8-69 (210)
481 COG1084 Predicted GTPase [Gene 96.2 0.031 6.7E-07 53.9 9.5 94 107-200 233-334 (346)
482 cd04165 GTPBP1_like GTPBP1-lik 96.2 0.0074 1.6E-07 55.8 5.1 21 219-239 1-21 (224)
483 cd04168 TetM_like Tet(M)-like 96.1 0.021 4.5E-07 53.2 7.7 57 104-161 72-130 (237)
484 cd04169 RF3 RF3 subfamily. Pe 96.1 0.03 6.5E-07 53.1 8.7 59 103-162 78-138 (267)
485 smart00176 RAN Ran (Ras-relate 96.1 0.0082 1.8E-07 54.4 4.6 51 223-273 1-55 (200)
486 KOG0078 GTP-binding protein SE 96.0 0.03 6.6E-07 50.6 8.0 91 102-194 66-166 (207)
487 cd04167 Snu114p Snu114p subfam 96.0 0.018 3.9E-07 52.4 6.8 56 104-160 79-136 (213)
488 KOG3859 Septins (P-loop GTPase 96.0 0.0053 1.2E-07 57.7 3.1 59 216-274 41-107 (406)
489 PRK12740 elongation factor G; 96.0 0.0064 1.4E-07 65.2 4.1 49 223-271 1-69 (668)
490 PTZ00132 GTP-binding nuclear p 95.9 0.023 5.1E-07 51.6 7.1 81 116-196 77-162 (215)
491 COG1217 TypA Predicted membran 95.9 0.052 1.1E-06 54.7 9.8 85 103-188 75-171 (603)
492 KOG1191 Mitochondrial GTPase [ 95.9 0.011 2.5E-07 59.6 5.2 87 111-197 339-445 (531)
493 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 95.9 0.032 6.9E-07 51.5 7.8 82 116-197 68-171 (222)
494 PRK08099 bifunctional DNA-bind 95.9 0.057 1.2E-06 54.3 10.1 24 217-240 219-242 (399)
495 PRK12739 elongation factor G; 95.8 0.035 7.7E-07 59.7 9.0 60 103-163 80-141 (691)
496 PRK00007 elongation factor G; 95.8 0.035 7.5E-07 59.8 8.9 59 104-163 83-143 (693)
497 PF00025 Arf: ADP-ribosylation 95.8 0.0039 8.5E-08 55.1 1.4 80 116-195 77-169 (175)
498 KOG0075 GTP-binding ADP-ribosy 95.8 0.07 1.5E-06 45.7 8.8 116 80-198 47-178 (186)
499 cd04105 SR_beta Signal recogni 95.8 0.021 4.6E-07 51.8 6.1 67 87-162 47-124 (203)
500 KOG0092 GTPase Rab5/YPT51 and 95.7 0.012 2.6E-07 52.4 4.1 57 217-273 5-65 (200)
No 1
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=100.00 E-value=4.5e-55 Score=418.16 Aligned_cols=275 Identities=41% Similarity=0.727 Sum_probs=244.4
Q ss_pred CcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCce
Q 017132 99 PVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTK 178 (376)
Q Consensus 99 ~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~ 178 (376)
.++||||||.+..+++.+.++.+|+||+|+|+|.|.++.+..++.++.++|+++|+||+||++......|.+++.+.+..
T Consensus 3 ~~~wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~ 82 (287)
T PRK09563 3 KIQWFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLILNKSDLADPEVTKKWIEYFEEQGIK 82 (287)
T ss_pred cCcCcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCe
Confidence 37999999999999999999999999999999999999999998888899999999999999877677899888766777
Q ss_pred EEEeeCcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEE
Q 017132 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV 258 (376)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~ 258 (376)
++++|++++.|+..|.+.+.++.+....+.+.++......++++||+||||||||||+|++++.+.+++.||+|++.+++
T Consensus 83 vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~ 162 (287)
T PRK09563 83 ALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWI 162 (287)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEE
Confidence 89999999999999988888776554333333333445688999999999999999999998888999999999999999
Q ss_pred EeCCeEEEEeCCCCcCCCCCcHHHHHHHHHhccccccccChhHHHHHHHHHHHcCCCcCHHHHHHHcCCCCCCCcHHHHH
Q 017132 259 RFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFV 338 (376)
Q Consensus 259 ~~~~~i~l~DTpG~i~~~~~~~~~~~kla~~~~i~~~~~~~~~v~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l 338 (376)
+++.+++|+||||++.+...+.+.+.+++++++|++..++.++++++++..+.+. +++.+..+|+++....+..+|+
T Consensus 163 ~~~~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~---~~~~l~~~y~~~~~~~~~~~~l 239 (287)
T PRK09563 163 KLGKGLELLDTPGILWPKLEDQEVGLKLALTGAIKDEALDLEEVAIFALEYLSKH---YPERLKERYKLDELPEDILELL 239 (287)
T ss_pred EeCCcEEEEECCCcCCCCCCcHHHHHHHHHhCCcchhhcChHHHHHHHHHHHHhh---CHHHHHHHhCCCCCCCCHHHHH
Confidence 9998999999999999988888999999999999999999999999999999876 5778999999974445789999
Q ss_pred HHHHhHh----CCC--cHHHHHHHHHHHHhcCCCCceeccCCCC
Q 017132 339 QKLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLERPPR 376 (376)
Q Consensus 339 ~~~a~~~----~~g--D~~~aa~~iL~d~~~Gklg~~~ld~pp~ 376 (376)
+.+|++. ++| |+++||+.||+||++||||+||||.||.
T Consensus 240 ~~~a~~~g~~~k~g~~D~~~aa~~~l~d~~~Gklg~~~ld~~~~ 283 (287)
T PRK09563 240 EAIARKRGALRKGGEIDYERASELLLNEFRNGKLGKITLETPEM 283 (287)
T ss_pred HHHHHHhCccccCCccCHHHHHHHHHHHHHcCCCCcEEccCCcc
Confidence 9999874 345 9999999999999999999999999974
No 2
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=100.00 E-value=6.8e-54 Score=407.91 Aligned_cols=270 Identities=43% Similarity=0.701 Sum_probs=241.0
Q ss_pred cccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceE
Q 017132 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179 (376)
Q Consensus 100 ~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~v 179 (376)
++||||||.+..+++.+.++.+|+||+|+|+|.|.++.++.+++.+.++|+++|+||+|++++.....|.+++++.+..+
T Consensus 1 ~~WfpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~v 80 (276)
T TIGR03596 1 IQWFPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKA 80 (276)
T ss_pred CccChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeE
Confidence 47999999999999999999999999999999999999999998888899999999999998877788988887667788
Q ss_pred EEeeCcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEE
Q 017132 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (376)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~ 259 (376)
+++|++++.|+..|.+.+.++.+......+.++......++++||+||||||||||+|++++.+.+++.||+|++.++++
T Consensus 81 i~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~ 160 (276)
T TIGR03596 81 LAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIK 160 (276)
T ss_pred EEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEE
Confidence 99999999999999888877765543333333434456889999999999999999999988889999999999999999
Q ss_pred eCCeEEEEeCCCCcCCCCCcHHHHHHHHHhccccccccChhHHHHHHHHHHHcCCCcCHHHHHHHcCCCCCCCcHHHHHH
Q 017132 260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339 (376)
Q Consensus 260 ~~~~i~l~DTpG~i~~~~~~~~~~~kla~~~~i~~~~~~~~~v~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~ 339 (376)
++.++.|+||||++.+...+.+.++++++++++++..++.+++++++++.+.+. +++.+...|+++....+..+|++
T Consensus 161 ~~~~~~l~DtPG~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~~~l~~~---~~~~l~~~y~i~~~~~~~~~~l~ 237 (276)
T TIGR03596 161 LSDGLELLDTPGILWPKFEDQEVGLKLAATGAIKDEALDLEDVALFLLEYLLEH---YPERLKERYKLDELPEDIVELLE 237 (276)
T ss_pred eCCCEEEEECCCcccCCCCchHHHHHHHHhCCcccccCChHHHHHHHHHHHHhh---CHHHHHHHhCcCCCCCCHHHHHH
Confidence 988999999999999998899999999999999999999999999999999886 56789999999865557899999
Q ss_pred HHHhHh----CCC--cHHHHHHHHHHHHhcCCCCceecc
Q 017132 340 KLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLE 372 (376)
Q Consensus 340 ~~a~~~----~~g--D~~~aa~~iL~d~~~Gklg~~~ld 372 (376)
.+|++. ++| |+++||+.||+||++|+||++|||
T Consensus 238 ~~a~~~g~~~k~g~~D~~~aa~~~l~d~~~Gklg~~~ld 276 (276)
T TIGR03596 238 AIAKKRGCLLKGGELDLDRAAEILLNDFRKGKLGRITLE 276 (276)
T ss_pred HHHHHhCccccCCccCHHHHHHHHHHHHHcCCCCceecC
Confidence 999874 344 999999999999999999999997
No 3
>COG1161 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=8.3e-47 Score=365.64 Aligned_cols=277 Identities=38% Similarity=0.665 Sum_probs=230.8
Q ss_pred CCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHh-C
Q 017132 98 RPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-G 176 (376)
Q Consensus 98 ~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~-g 176 (376)
..+|||||||.++++++.++++.+|+|++|+|||+|.+++++.++++...++.++|+||+||+++.....|.+++.++ +
T Consensus 12 ~~i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~ 91 (322)
T COG1161 12 NKIQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKEKPKLLVLNKADLAPKEVTKKWKKYFKKEEG 91 (322)
T ss_pred ccccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHccCCcEEEEehhhcCCHHHHHHHHHHHHhcCC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999887 5
Q ss_pred ceEEEeeCcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE
Q 017132 177 TKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK 256 (376)
Q Consensus 177 ~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~ 256 (376)
...+++++..+.+...+...+..+....-...+.++......+|++|||||||||||||+|.+++.+.+++.||+|++.|
T Consensus 92 ~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q 171 (322)
T COG1161 92 IKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ 171 (322)
T ss_pred CccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE
Confidence 67788999888888888765555533222222334444456789999999999999999999999999999999999999
Q ss_pred EEEeCCeEEEEeCCCCcCCCCCc-HHHHHHHHHhccccccccChhHHHHHHHHHHHcCCCcCHHHHHH-HcCCC-CCCCc
Q 017132 257 WVRFGKDLEFLDSPGIIPMRISD-QAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQN-RYKID-MDGTC 333 (376)
Q Consensus 257 ~~~~~~~i~l~DTpG~i~~~~~~-~~~~~kla~~~~i~~~~~~~~~v~~~ll~~l~~~~~~~~~~l~~-~y~i~-~~~~~ 333 (376)
+++++..++|+||||++++...+ ...+.+++.+++|++.+++...++.+++..+. ....+.+.+.. .|... ....+
T Consensus 172 ~i~~~~~i~LlDtPGii~~~~~~~~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~y~~~~~~~~~ 250 (322)
T COG1161 172 WIKLDDGIYLLDTPGIIPPKFDDDELVLLKLAPKGEIKDPVLPADEVAERLLGGLL-IDEHYGEKLNITRYESNPIHRTD 250 (322)
T ss_pred EEEcCCCeEEecCCCcCCCCccchHHHhhccccccccCccccChHHHHHHHHhhhh-hhhhhhHhhCCcccccccccccC
Confidence 99999999999999999998877 88888999999999999999999988877663 11113333333 33322 11235
Q ss_pred HHHHHHHHHhHhC-----CC--cHHHHHHHHHHHHhcCCCCceeccCCC
Q 017132 334 GKTFVQKLALHLF-----NG--DTHQAAFRILTDFRKGKFGWISLERPP 375 (376)
Q Consensus 334 ~~~~l~~~a~~~~-----~g--D~~~aa~~iL~d~~~Gklg~~~ld~pp 375 (376)
.++|++.++.+++ +| |+++||..+++||+.|++|++++|.++
T Consensus 251 ~~~~l~~~a~~rg~~l~~~g~~d~~~~~~~~~~d~~~gklg~~~~~~~~ 299 (322)
T COG1161 251 PEEFLELIAKKRGWLLLKGGEPDLERAAETILKDIRNGKLGWFSLEEPE 299 (322)
T ss_pred HHHHHHHHHHHhhhhhcCCCCccHHHHHHHHHHHHHhCCcceeecCCcc
Confidence 6788888887642 33 999999999999999999999999764
No 4
>KOG2484 consensus GTPase [General function prediction only]
Probab=100.00 E-value=2.3e-45 Score=350.29 Aligned_cols=267 Identities=35% Similarity=0.544 Sum_probs=208.7
Q ss_pred CCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh----cCCCeEEEEEccCCCCHHhHHHHHH
Q 017132 95 KSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWAT 170 (376)
Q Consensus 95 ~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~w~~ 170 (376)
.+..+.+|++++.....+++.++++.+||||||+|||+|++++++++++++ ++|++|+|+||+||++++.++.|..
T Consensus 121 ~~~~~~~~~~~s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~ 200 (435)
T KOG2484|consen 121 EEYENALDNEESKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLV 200 (435)
T ss_pred HHhhhhccchhhHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHH
Confidence 577889999999999999999999999999999999999999999999988 4699999999999999999999999
Q ss_pred HHHHhCceEEEeeCcCCcch--hhhh--H--HHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhccccc
Q 017132 171 YFAKQGTKVIFSNGQLGMGT--MKLS--R--LAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCP 244 (376)
Q Consensus 171 ~~~~~g~~vi~iSa~~g~gi--~~L~--~--~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~ 244 (376)
||+++|..++|.++....+. ..+. . -...+......+ ...+.....++|||||||||||||+||+|..++.|.
T Consensus 201 YLr~~~ptv~fkast~~~~~~~~~~~~s~c~gae~l~~~lgny-~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~ 279 (435)
T KOG2484|consen 201 YLRREGPTVAFKASTQMQNSNSKNLQSSVCFGAETLMKVLGNY-CRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACN 279 (435)
T ss_pred HHHhhCCcceeecccccccccccccccchhhhHHHHHHHhcCc-ccccccCcceEeeeecCCCCChhHHHHHHHHhcccc
Confidence 99999999999877654443 1111 0 000011111111 122233567899999999999999999999999999
Q ss_pred ccCCCCceeEEEEEEeCCeEEEEeCCCCcCCCCCcHHHHHHHHHhccccccccChhHHHHHHHHHHHcCCCcCHHHHHHH
Q 017132 245 AAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNR 324 (376)
Q Consensus 245 v~~~pg~T~~~~~~~~~~~i~l~DTpG~i~~~~~~~~~~~kla~~~~i~~~~~~~~~v~~~ll~~l~~~~~~~~~~l~~~ 324 (376)
|++.||.|+.+|+++++.++.|+|+||++++...+.. ++.|..|..+.....+...+..+ |.++ ..+.+...
T Consensus 280 vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~~~~~~~-~~~Lrn~~~i~~~~dp~~~v~~i----L~~~---~~e~~~~~ 351 (435)
T KOG2484|consen 280 VGNVPGVTRSMQEVKLDKKIRLLDSPGIVPPSIDEKD-ALALRNCIPIGKVADPVTPVSCI----LKRC---SKESRSVL 351 (435)
T ss_pred CCCCccchhhhhheeccCCceeccCCceeecCCCccc-hhhhhcccccccccCccchHHHH----HHHh---hHHHHHHH
Confidence 9999999999999999999999999999988776654 44455454443323333333333 3333 23667788
Q ss_pred cCCCCCCCcHHHHHHHHHhHh----CCC--cHHHHHHHHHHHHhcCCCCceec
Q 017132 325 YKIDMDGTCGKTFVQKLALHL----FNG--DTHQAAFRILTDFRKGKFGWISL 371 (376)
Q Consensus 325 y~i~~~~~~~~~~l~~~a~~~----~~g--D~~~aa~~iL~d~~~Gklg~~~l 371 (376)
|.++- .....+|+..+|+++ +|| |.+.||+.||+||+.|||+|||+
T Consensus 352 Y~~~~-~~~~~~Fl~~~ar~~G~~~kGG~pd~~~AA~~vl~Dw~~Gki~y~~~ 403 (435)
T KOG2484|consen 352 YNIPS-IRATDDFLEKFARRRGLLLKGGIPDVNAAAFAVLNDWRTGKIGYYTL 403 (435)
T ss_pred hcCCC-cchHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHhhccCceeeeeC
Confidence 88873 335678998888763 566 99999999999999999999995
No 5
>COG2262 HflX GTPases [General function prediction only]
Probab=100.00 E-value=5e-45 Score=351.41 Aligned_cols=220 Identities=21% Similarity=0.219 Sum_probs=180.2
Q ss_pred ccccchhhHHhhcCCee--eEEeecCCCCCCCccccchhhh---cccccCCcEEEEcCCCCCcccChhHHHHHHHHHH-H
Q 017132 43 SSLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-D 116 (376)
Q Consensus 43 ~~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~ig~gk~e~---~~~~~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~-~ 116 (376)
.+|+|+..||+|||++| .++|+|.+|||+||||+||+|| .++..+||+||||++|+|+| .+|+++.++ +
T Consensus 20 ~~leEl~~La~tag~~v~~~~~q~r~~pdp~~~iG~GK~eEi~~~v~~~~ad~VIf~~~LsP~Q-----~~NLe~~l~~k 94 (411)
T COG2262 20 ESLEELAELAETAGYEVVEVVTQKRERPDPKTYIGSGKLEEIAEAVEETGADLVIFDHELSPSQ-----LRNLEKELGVK 94 (411)
T ss_pred hhHHHHHHHHHHcCCeEeeeEEEeccCCCcceecCcchHHHHHHHHHhcCCCEEEECCcCCHHH-----HHHHHHHHCCE
Confidence 48999999999999999 9999999999999999999966 77889999999999999999 999999998 9
Q ss_pred HhhhcCeEEEEEecCCCC--CCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcchhhh-
Q 017132 117 QLKLMDVVIEVRDARIPL--STTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKL- 193 (376)
Q Consensus 117 vidr~dlILeV~DaR~p~--~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi~~L- 193 (376)
+|||+.+||+||..|+.. +..+.+++++.+..|++. ..| ..+++.|+++ +..|.|..++
T Consensus 95 VIDRt~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~-------------~~~-~~l~~~Gggi----G~rGpGE~~lE 156 (411)
T COG2262 95 VIDRTQLILDIFAQRARSREGKLQVELAQLRYELPRLV-------------GSG-SHLSRLGGGI----GFRGPGETQLE 156 (411)
T ss_pred EEehHhHHHHHHHHHhccchhhhhhhHHhhhhhhhHhH-------------hhh-hhcccccCCC----CCCCCCchHHH
Confidence 999999999999877655 445566777777777763 444 5566666555 5557776543
Q ss_pred -------------hHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe
Q 017132 194 -------------SRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF 260 (376)
Q Consensus 194 -------------~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~ 260 (376)
++.++++.+.+...|++|... ..+.|++|||||||||||+|+|++. .+.+.+++|+|+|++++++
T Consensus 157 ~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~-~~p~vaLvGYTNAGKSTL~N~LT~~-~~~~~d~LFATLdpttR~~ 234 (411)
T COG2262 157 TDRRRIRRRIAKLKRELENVEKAREPRRKKRSRS-GIPLVALVGYTNAGKSTLFNALTGA-DVYVADQLFATLDPTTRRI 234 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCeEEEEeeccccHHHHHHHHhcc-CeeccccccccccCceeEE
Confidence 344445545555555555433 3456999999999999999999975 4889999999999988775
Q ss_pred ----CCeEEEEeCCCCcCCCCCcHHHHHHHH
Q 017132 261 ----GKDLEFLDSPGIIPMRISDQAAAIKLA 287 (376)
Q Consensus 261 ----~~~i~l~DTpG~i~~~~~~~~~~~kla 287 (376)
+..++|+||+|||...|+...+||+--
T Consensus 235 ~l~~g~~vlLtDTVGFI~~LP~~LV~AFksT 265 (411)
T COG2262 235 ELGDGRKVLLTDTVGFIRDLPHPLVEAFKST 265 (411)
T ss_pred EeCCCceEEEecCccCcccCChHHHHHHHHH
Confidence 467999999999999999999999843
No 6
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=100.00 E-value=1.3e-39 Score=303.17 Aligned_cols=279 Identities=29% Similarity=0.430 Sum_probs=212.4
Q ss_pred cEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHH
Q 017132 89 DLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAW 168 (376)
Q Consensus 89 ~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w 168 (376)
+-++|-..=.|+.||||||.++.+.+++.+..+|+|+||.|||.|++++++.+.+.+..+++|+|+||+||+++.+....
T Consensus 15 ~~~~~~~~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~~k~riiVlNK~DLad~~~~k~~ 94 (335)
T KOG2485|consen 15 DAVIFAKYNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLPPKPRIIVLNKMDLADPKEQKKI 94 (335)
T ss_pred hcccccccCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcCCCceEEEEecccccCchhhhHH
Confidence 34556666678999999999999999999999999999999999999999999999999999999999999997777777
Q ss_pred HHHHHHhCc-eEEEeeCcCC--cchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhh-----c
Q 017132 169 ATYFAKQGT-KVIFSNGQLG--MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLK-----R 240 (376)
Q Consensus 169 ~~~~~~~g~-~vi~iSa~~g--~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~-----~ 240 (376)
.+++..++. ..++.++... .++..+...+..+..+....-+ .......|++||.||||||||||++.. +
T Consensus 95 iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~ir---t~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~ 171 (335)
T KOG2485|consen 95 IQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILSEELVRFIR---TLNSEYNVMVVGVPNVGKSSLINALRNVHLRKK 171 (335)
T ss_pred HHHHHhhcccchhhhhhhhhhhhccccHHHHHHHHHHHHHHhhc---ccCCceeEEEEcCCCCChHHHHHHHHHHHhhhc
Confidence 777776653 3333444332 2355555554444333222111 123457899999999999999999863 4
Q ss_pred ccccccCCCCceeEEEE-EEe--CCeEEEEeCCCCcCCCCCcHHHHHHHHHhccccccccChhHHHHHHHHHHHcCCCcC
Q 017132 241 RMCPAAPRPGVTRVLKW-VRF--GKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVG 317 (376)
Q Consensus 241 ~~~~v~~~pg~T~~~~~-~~~--~~~i~l~DTpG~i~~~~~~~~~~~kla~~~~i~~~~~~~~~v~~~ll~~l~~~~~~~ 317 (376)
+.+.|++.||+|+.++. +++ ...++++||||++.|.+.+.+.++|||+|++++++.++++.+++|++++++++....
T Consensus 172 k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKLAL~g~Vkd~~V~~~~~adylL~~lN~~~~~~ 251 (335)
T KOG2485|consen 172 KAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKLALCGLVKDHLVGEETIADYLLYLLNSHSDFS 251 (335)
T ss_pred cceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhhhhcccccccccCHHHHHHHHHHHHhccCcch
Confidence 66789999999999875 566 456999999999999999999999999999999999999999999999999986432
Q ss_pred HHHHHHHcCCCC-CCCcHHHHHHHHHhHh-C-------CC---------cHHHHHHHHHHHHhcCCCCceeccC
Q 017132 318 ITALQNRYKIDM-DGTCGKTFVQKLALHL-F-------NG---------DTHQAAFRILTDFRKGKFGWISLER 373 (376)
Q Consensus 318 ~~~l~~~y~i~~-~~~~~~~~l~~~a~~~-~-------~g---------D~~~aa~~iL~d~~~Gklg~~~ld~ 373 (376)
. .+.++... ..++.+.-++.++.+. + .| .+-.+|+.+++-||+|.+|.+.++.
T Consensus 252 y---~~~l~~~~~~~dd~~~nl~~l~v~~~~~~k~s~fdg~~~~ei~~~~~ln~~e~~l~~~rsg~l~~~~ln~ 322 (335)
T KOG2485|consen 252 Y---VKDLKPGSTPADDIEQNLAVLAVRRTKNEKVSAFDGNNKLEIEQPNLLNLARFFLATFRSGLLGPEELNY 322 (335)
T ss_pred h---HHHhccCCCccccHHHHHHHHHHHHHhcceeeEecCCceeEEechHHHHHHHHHHHHHHhccccceeecc
Confidence 2 22233221 1223333344444331 1 12 3678999999999999999776653
No 7
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=100.00 E-value=8.1e-40 Score=310.71 Aligned_cols=249 Identities=28% Similarity=0.467 Sum_probs=202.6
Q ss_pred hHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEE
Q 017132 105 GHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVI 180 (376)
Q Consensus 105 Gh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~----~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi 180 (376)
|+..+++.++.++||.+|||+.|+|||+|.++++..++.+++ .|.+|+|+||+||++......|...+.+....+.
T Consensus 198 GQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiA 277 (572)
T KOG2423|consen 198 GQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIA 277 (572)
T ss_pred cchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCccee
Confidence 447899999999999999999999999999999999999986 4678999999999999999999999998877776
Q ss_pred EeeC-cCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEE
Q 017132 181 FSNG-QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (376)
Q Consensus 181 ~iSa-~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~ 259 (376)
|.++ .+..|-..|.++++++.+... ....+.|++||||||||||+||+|..++.|.|++.||-|+-.|.+.
T Consensus 278 fHAsi~nsfGKgalI~llRQf~kLh~--------dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYIt 349 (572)
T KOG2423|consen 278 FHASINNSFGKGALIQLLRQFAKLHS--------DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYIT 349 (572)
T ss_pred eehhhcCccchhHHHHHHHHHHhhcc--------CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHH
Confidence 6543 345566677777777654321 1235779999999999999999999999999999999999999988
Q ss_pred eCCeEEEEeCCCCcCCCCCcHHHHHHHHHhccccccccChhHHHHHHHHHHHcCCCcCHHHHHHHcCCCCCCCcHHHHHH
Q 017132 260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339 (376)
Q Consensus 260 ~~~~i~l~DTpG~i~~~~~~~~~~~kla~~~~i~~~~~~~~~v~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~ 339 (376)
+-+.|+||||||++.+.-....+.+ +-|.+ ++-...+.-+|+-.+|.|. -++.|...|+|+ ...+..+|++
T Consensus 350 LmkrIfLIDcPGvVyps~dset~iv---LkGvV--RVenv~~pe~yi~~vl~R~---k~ehl~rtYkI~-~w~d~~dfle 420 (572)
T KOG2423|consen 350 LMKRIFLIDCPGVVYPSSDSETDIV---LKGVV--RVENVKNPEDYIDGVLERC---KPEHLSRTYKIS-GWNDSTDFLE 420 (572)
T ss_pred HHhceeEecCCCccCCCCCchHHHH---hhcee--eeeecCCHHHHHHHHHHhh---hHHHHHhhhCCC-ccccHHHHHH
Confidence 8899999999999987543322221 12222 2233445556666677775 467899999997 3456789999
Q ss_pred HHHhH----hCCC--cHHHHHHHHHHHHhcCCCCcee
Q 017132 340 KLALH----LFNG--DTHQAAFRILTDFRKGKFGWIS 370 (376)
Q Consensus 340 ~~a~~----~~~g--D~~~aa~~iL~d~~~Gklg~~~ 370 (376)
++|.+ +||| |+...|++||+||..|||+||.
T Consensus 421 ~La~k~GkLlKGGEPd~~~vsKmvLnDwqRGkiP~FV 457 (572)
T KOG2423|consen 421 KLAIKQGKLLKGGEPDLVVVSKMVLNDWQRGKIPFFV 457 (572)
T ss_pred HHHHHhCccccCCCCchhHHHHHHhhHhhcCCCceec
Confidence 99976 4676 9999999999999999999998
No 8
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=100.00 E-value=1e-38 Score=312.84 Aligned_cols=255 Identities=24% Similarity=0.377 Sum_probs=188.9
Q ss_pred HHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeC
Q 017132 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNG 184 (376)
Q Consensus 109 ~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~----~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa 184 (376)
.++++++.+++++|+|+.|+|||.|.-.+++.++++.. .|..++++||+||++++++..|.+||.+.+..++|+||
T Consensus 163 E~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA 242 (562)
T KOG1424|consen 163 EIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSA 242 (562)
T ss_pred HHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEec
Confidence 56999999999999999999999999999999999986 47789999999999999999999999999999999998
Q ss_pred cCC----c--chhhh----------hH---------HHHHhh---hhhhhhhhcc----------CC-CCCceEEeEeec
Q 017132 185 QLG----M--GTMKL----------SR---------LAKALA---SDVNVKRRSK----------GL-LPRAVRAGIVGY 225 (376)
Q Consensus 185 ~~g----~--gi~~L----------~~---------~l~~l~---~~~~~~~~~~----------~~-~~~~~~v~lvG~ 225 (376)
... . ++.+- .. .+.+.. .+....++.+ +. ....++||+|||
T Consensus 243 ~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGY 322 (562)
T KOG1424|consen 243 LAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGY 322 (562)
T ss_pred ccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecC
Confidence 651 1 11110 00 000000 0000000000 00 112478999999
Q ss_pred CCCCcchhhhhhhhcccccccCCCCceeEEEEEEeCCeEEEEeCCCCcCCCCCcHHHHHHHHHhccccccccChhHHHHH
Q 017132 226 PNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAI 305 (376)
Q Consensus 226 pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~i~~~~~~~~~~~kla~~~~i~~~~~~~~~v~~~ 305 (376)
|||||||+||+|.|++.+.|+.+||.|+++|++.+...+.|+||||++.|.+...... .+++ .++.++++.++
T Consensus 323 PNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPSf~~~r~e---mvl~----GiLPIDQmrd~ 395 (562)
T KOG1424|consen 323 PNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPSFSPTRAE---MVLN----GILPIDQLRDH 395 (562)
T ss_pred CCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCCccccCCCchHHH---HHHh----cCccHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999887642222 2232 34555555554
Q ss_pred H--HH-HHHcCCCcCHHHHHHHcCC---C----CCCCcHHHHHHHHHhHh-----CC-CcHHHHHHHHHHHHhcCCCCce
Q 017132 306 L--VQ-MLARIPTVGITALQNRYKI---D----MDGTCGKTFVQKLALHL-----FN-GDTHQAAFRILTDFRKGKFGWI 369 (376)
Q Consensus 306 l--l~-~l~~~~~~~~~~l~~~y~i---~----~~~~~~~~~l~~~a~~~-----~~-gD~~~aa~~iL~d~~~Gklg~~ 369 (376)
. +. +..++ ....|+..|+. . -...+..+++..+|..+ ++ .|..||||.||+||.+|||.|+
T Consensus 396 ~~~~~llaerI---P~~~Le~~Y~~k~~e~~~~~~pp~A~ell~a~a~~RGfmts~~~~D~~RAAr~ILKDyv~GKL~~~ 472 (562)
T KOG1424|consen 396 YGAVGLLAERI---PRHVLERLYGHKPREDPEDSRPPSAAELLNAYAYKRGFMTSKGLPDEYRAARYILKDYVSGKLLYC 472 (562)
T ss_pred cchHHHHHHhc---CHHHHHHHhCCCcccccCCCCCchHHHHHHHHHHhcchhhhccCCcchHHHHHHHHHHhCCeeeee
Confidence 2 22 23444 45678888851 1 12246789999998753 22 2999999999999999999888
Q ss_pred eccCCC
Q 017132 370 SLERPP 375 (376)
Q Consensus 370 ~ld~pp 375 (376)
. .||
T Consensus 473 ~--~PP 476 (562)
T KOG1424|consen 473 F--PPP 476 (562)
T ss_pred e--CCC
Confidence 7 565
No 9
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=100.00 E-value=3.1e-36 Score=295.05 Aligned_cols=218 Identities=22% Similarity=0.279 Sum_probs=164.1
Q ss_pred ccccchhhHHhhcCCee--eEEeecCCCCCCCccccchhhh---cccccCCcEEEEcCCCCCcccChhHHHHHHHHHH-H
Q 017132 43 SSLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-D 116 (376)
Q Consensus 43 ~~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~ig~gk~e~---~~~~~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~-~ 116 (376)
.+|.|+..||+|||++| .++|++.+|||+||+|+||+|+ ++++.++|+||||++|+|+| ++|+++.+. +
T Consensus 17 ~~~~E~~~L~~~~~~~v~~~~~~~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~l~p~q-----~~nl~~~~~~~ 91 (351)
T TIGR03156 17 ESLEELAELAETAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEELEADLVIFDHELSPSQ-----ERNLEKALGCR 91 (351)
T ss_pred hhHHHHHHHHHHCCCEEEEEEEEecCCCCCCeEecccHHHHHHHHHHhcCCCEEEECCCCCHHH-----HHHHHHHhCCc
Confidence 47999999999999999 8999999999999999999977 67789999999999999999 999999998 9
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHHHH--HHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcchh---
Q 017132 117 QLKLMDVVIEVRDARIPLSTTHPLMD--QWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM--- 191 (376)
Q Consensus 117 vidr~dlILeV~DaR~p~~~~~~~l~--~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi~--- 191 (376)
++||+.+||+||..|+...+...+++ ++.+..|+++ ..|.+ +.+++..+ +..|.|..
T Consensus 92 v~Dr~~lil~iF~~ra~t~e~klqv~la~l~~~l~r~~-------------~~~~~-l~~~~~~i----~~~g~gE~~~~ 153 (351)
T TIGR03156 92 VIDRTGLILDIFAQRARTHEGKLQVELAQLKYLLPRLV-------------GGWTH-LSRQGGGI----GTRGPGETQLE 153 (351)
T ss_pred ccchHHHHHHHHHHhccChHHHHHHHHHhccchhhhhh-------------hhHHH-HHhhcCCC----CCCCCChhHHH
Confidence 99999999999999987766655544 4445555542 45655 55544332 11333432
Q ss_pred -----------hhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe
Q 017132 192 -----------KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF 260 (376)
Q Consensus 192 -----------~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~ 260 (376)
+|++.++++...+...+..|. ....++|++|||||||||||||+|++.+ +.+++.||+|+|+....+
T Consensus 154 ~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~-~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i 231 (351)
T TIGR03156 154 TDRRLIRERIAQLKKELEKVEKQRERQRRRRK-RADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRL 231 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEE
Confidence 223333333333333332221 1234789999999999999999999876 778999999999765443
Q ss_pred ----CCeEEEEeCCCCcCCCCCcHHHHHH
Q 017132 261 ----GKDLEFLDSPGIIPMRISDQAAAIK 285 (376)
Q Consensus 261 ----~~~i~l~DTpG~i~~~~~~~~~~~k 285 (376)
+..+.++|||||+...+++..++|+
T Consensus 232 ~~~~~~~i~l~DT~G~~~~l~~~lie~f~ 260 (351)
T TIGR03156 232 DLPDGGEVLLTDTVGFIRDLPHELVAAFR 260 (351)
T ss_pred EeCCCceEEEEecCcccccCCHHHHHHHH
Confidence 3578999999998765666656554
No 10
>PRK11058 GTPase HflX; Provisional
Probab=100.00 E-value=1.9e-36 Score=303.09 Aligned_cols=217 Identities=18% Similarity=0.216 Sum_probs=164.7
Q ss_pred cccchhhHHhhcCCee--eEEeecCCCCCCCccccchhhh---cccccCCcEEEEcCCCCCcccChhHHHHHHHHHH-HH
Q 017132 44 SLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-DQ 117 (376)
Q Consensus 44 ~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~ig~gk~e~---~~~~~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~-~v 117 (376)
+|.|+..||+|||++| .++|+|.+|||+||+|+||+|+ ++++.++|+||||++|+|+| .+|+++.+. ++
T Consensus 26 ~~~El~~L~~~~g~~v~~~~~q~~~~~~~~~~~g~gk~~e~~~~~~~~~~~~vi~~~~lsp~q-----~~nle~~~~~~v 100 (426)
T PRK11058 26 DLQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHALSPAQ-----ERNLERLCECRV 100 (426)
T ss_pred hHHHHHHHHHHCCCEEEEEEEEecCCCCCCeeecccHHHHHHHHHHhcCCCEEEECCCCCHHH-----HHHHHHHHCCeE
Confidence 7999999999999999 8999999999999999999977 77789999999999999999 999999998 99
Q ss_pred hhhcCeEEEEEecCCCCCCCc--HHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcchhhhh-
Q 017132 118 LKLMDVVIEVRDARIPLSTTH--PLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS- 194 (376)
Q Consensus 118 idr~dlILeV~DaR~p~~~~~--~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~- 194 (376)
+||+.+||+||..|+...+.. .+++++.+..|++. ..|. ++.++|+++ +..|.|..++.
T Consensus 101 ~DR~~lil~IF~~rA~t~e~klqvelA~l~y~~prl~-------------~~~~-~l~~~~gg~----g~~g~ge~~~e~ 162 (426)
T PRK11058 101 IDRTGLILDIFAQRARTHEGKLQVELAQLRHLATRLV-------------RGWT-HLERQKGGI----GLRGPGETQLET 162 (426)
T ss_pred ecchhHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhh-------------cccc-chhhhcCCC----CCCCCChhHhHH
Confidence 999999999998888765554 45566667778763 4454 345555443 44577776542
Q ss_pred -------------HHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-
Q 017132 195 -------------RLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF- 260 (376)
Q Consensus 195 -------------~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~- 260 (376)
+.|+++...+...+..|. ....++|++|||||||||||||+|++.+ ..+++.||+|+|.....+
T Consensus 163 d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~-~~~~p~ValVG~~NaGKSSLlN~Lt~~~-~~v~~~~~tTld~~~~~i~ 240 (426)
T PRK11058 163 DRRLLRNRIVQILSRLERVEKQREQGRRARI-KADVPTVSLVGYTNAGKSTLFNRITEAR-VYAADQLFATLDPTLRRID 240 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh-hcCCCEEEEECCCCCCHHHHHHHHhCCc-eeeccCCCCCcCCceEEEE
Confidence 222222222222221121 1123579999999999999999999876 458999999999765443
Q ss_pred --C-CeEEEEeCCCCcCCCCCcHHHHHH
Q 017132 261 --G-KDLEFLDSPGIIPMRISDQAAAIK 285 (376)
Q Consensus 261 --~-~~i~l~DTpG~i~~~~~~~~~~~k 285 (376)
+ ..+.++|||||+...+++...+|+
T Consensus 241 l~~~~~~~l~DTaG~~r~lp~~lve~f~ 268 (426)
T PRK11058 241 VADVGETVLADTVGFIRHLPHDLVAAFK 268 (426)
T ss_pred eCCCCeEEEEecCcccccCCHHHHHHHH
Confidence 2 378999999998765566656554
No 11
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=100.00 E-value=5.5e-32 Score=239.72 Aligned_cols=171 Identities=47% Similarity=0.907 Sum_probs=144.5
Q ss_pred cChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEE
Q 017132 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIF 181 (376)
Q Consensus 102 w~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~ 181 (376)
||||||.++++++.+.++.+|+|++|+|++.|....+..+...+.++|.++|+||+|+.++.....|.++++..+..+++
T Consensus 1 ~~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~ 80 (171)
T cd01856 1 WFPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLF 80 (171)
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999999999999999999999887777777777789999999999998776666788877776778899
Q ss_pred eeCcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeC
Q 017132 182 SNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG 261 (376)
Q Consensus 182 iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~ 261 (376)
+|++.+.|+.+|.+.+.+........ +..+..+...+++++|.||||||||+|+|++...+.+++.||+|++.+.+.++
T Consensus 81 iSa~~~~gi~~L~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~ 159 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLLKDIEKL-KAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS 159 (171)
T ss_pred EECCCcccHHHHHHHHHHHHHHHhhh-hhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec
Confidence 99999999999988877654322211 11222334578999999999999999999987777899999999999998888
Q ss_pred CeEEEEeCCCCc
Q 017132 262 KDLEFLDSPGII 273 (376)
Q Consensus 262 ~~i~l~DTpG~i 273 (376)
..+.++||||++
T Consensus 160 ~~~~~iDtpG~~ 171 (171)
T cd01856 160 PGIYLLDTPGIL 171 (171)
T ss_pred CCEEEEECCCCC
Confidence 889999999984
No 12
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.96 E-value=9.2e-29 Score=215.93 Aligned_cols=151 Identities=31% Similarity=0.542 Sum_probs=128.0
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCCCCHHhHHHHHHHHHHhC-ceEEEeeCcCCc
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGM 188 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~----~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g-~~vi~iSa~~g~ 188 (376)
+++.++.+|+|++|+|++.|..+.+..+.+.+. ++|+++|+||+|+.++++...|..++.+.. ..++++|++++.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 567899999999999999998888888887765 389999999999998887788988887654 235678999999
Q ss_pred chhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeCCeEEEEe
Q 017132 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLD 268 (376)
Q Consensus 189 gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~~~i~l~D 268 (376)
|...|.+.+.++.... + .....+|+++|.||||||||||+|.+.+.+.+++.||+|++.+++.++.+++|+|
T Consensus 82 ~~~~L~~~l~~~~~~~---~-----~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liD 153 (157)
T cd01858 82 GKGSLIQLLRQFSKLH---S-----DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLID 153 (157)
T ss_pred cHHHHHHHHHHHHhhh---c-----cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEE
Confidence 9999888887654321 1 1134679999999999999999999998899999999999999999888899999
Q ss_pred CCCC
Q 017132 269 SPGI 272 (376)
Q Consensus 269 TpG~ 272 (376)
|||+
T Consensus 154 tPGi 157 (157)
T cd01858 154 CPGV 157 (157)
T ss_pred CcCC
Confidence 9997
No 13
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.95 E-value=1.5e-27 Score=211.39 Aligned_cols=150 Identities=37% Similarity=0.617 Sum_probs=113.1
Q ss_pred CeEEEEEecCCCCCCCcHHHHHHh----cCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCc--chh----
Q 017132 122 DVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM--GTM---- 191 (376)
Q Consensus 122 dlILeV~DaR~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~--gi~---- 191 (376)
|+|++|+|+|.|.++.++++.+.+ .++|+++|+||+||++++....|.+++.+....+.|.|+.... ++.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 899999999999999999998883 4689999999999999999999999998876656565543321 110
Q ss_pred -------hhhHH-----HHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEE
Q 017132 192 -------KLSRL-----AKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (376)
Q Consensus 192 -------~L~~~-----l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~ 259 (376)
.+... .+++......... ++.....++|+++|+||||||||||+|++++.+.+++.||+|++.+++.
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~ 159 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYSR-NKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH 159 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHhh-ccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEE
Confidence 01000 0011111111111 1122345789999999999999999999988889999999999999999
Q ss_pred eCCeEEEEeCCCC
Q 017132 260 FGKDLEFLDSPGI 272 (376)
Q Consensus 260 ~~~~i~l~DTpG~ 272 (376)
++.++.|+||||+
T Consensus 160 ~~~~~~l~DtPGi 172 (172)
T cd04178 160 LDKKVKLLDSPGI 172 (172)
T ss_pred eCCCEEEEECcCC
Confidence 9889999999997
No 14
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.95 E-value=3e-27 Score=202.81 Aligned_cols=136 Identities=34% Similarity=0.617 Sum_probs=122.1
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcC
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQL 186 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~----~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~ 186 (376)
++++.+.++++|+|++|+|++.|....+.++.+++. ++|.++|+||+|+.+++....|.+++.+.+..++++|+.+
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~ 81 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALK 81 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 467788999999999999999999888888888763 6899999999999988877889888888888899999987
Q ss_pred CcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeCCeEEE
Q 017132 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEF 266 (376)
Q Consensus 187 g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~~~i~l 266 (376)
+.+ +++++|.||||||||+|+|++++.+.+++.+|+|++.+++.++.++.+
T Consensus 82 ~~~-----------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 132 (141)
T cd01857 82 ENA-----------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTPTITL 132 (141)
T ss_pred CCc-----------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCCCEEE
Confidence 643 489999999999999999999887889999999999999999889999
Q ss_pred EeCCCCcCC
Q 017132 267 LDSPGIIPM 275 (376)
Q Consensus 267 ~DTpG~i~~ 275 (376)
+|||||+.|
T Consensus 133 ~DtpG~~~p 141 (141)
T cd01857 133 CDCPGLVFP 141 (141)
T ss_pred EECCCcCCC
Confidence 999999865
No 15
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.95 E-value=1.1e-26 Score=202.53 Aligned_cols=151 Identities=32% Similarity=0.512 Sum_probs=121.4
Q ss_pred CeEEEEEecCCCCCCCcHHHH-HHh--cCCCeEEEEEccCCCCHHhHHHHHHHHHHh-CceEEEeeCcCCcchhhhhHHH
Q 017132 122 DVVIEVRDARIPLSTTHPLMD-QWL--GNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 122 dlILeV~DaR~p~~~~~~~l~-~~l--~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~-g~~vi~iSa~~g~gi~~L~~~l 197 (376)
|+||+|+|++.|.+..+..+. ..+ .++|.++|+||+|++++++...|..++.+. +..++++|+++|.|+..|.+.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i 80 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF 80 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHH
Confidence 799999999999988888777 333 478999999999999888777887666544 4568899999999999988876
Q ss_pred HHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeCCeEEEEeCCCC
Q 017132 198 KALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (376)
Q Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~ 272 (376)
.+...........+.......+++++|+||||||||+|+|++...+.+++.||+|++.++..++..+.|+|||||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 81 TKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred HHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 543221111111112223467899999999999999999999887889999999999999998889999999997
No 16
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.92 E-value=1.1e-24 Score=213.73 Aligned_cols=164 Identities=24% Similarity=0.279 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHHHhC-ceEEEee
Q 017132 107 IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSN 183 (376)
Q Consensus 107 ~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g-~~vi~iS 183 (376)
+....++....++++|+||+|+|++.+.+..+.+++++++ ++|+++|+||+|-...+. -...|.++| ++++.+|
T Consensus 70 ~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~---~~~efyslG~g~~~~IS 146 (444)
T COG1160 70 QELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEE---LAYEFYSLGFGEPVPIS 146 (444)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhh---hHHHHHhcCCCCceEee
Confidence 3555666777899999999999999999999999999886 589999999999874332 123345666 6789999
Q ss_pred CcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE---EEe
Q 017132 184 GQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW---VRF 260 (376)
Q Consensus 184 a~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~---~~~ 260 (376)
|.+|.|+.+|.+.+.+..+ ........+ ...+++|+|||.||||||||+|+|+++.++.+++.||||||... .+-
T Consensus 147 A~Hg~Gi~dLld~v~~~l~-~~e~~~~~~-~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~ 224 (444)
T COG1160 147 AEHGRGIGDLLDAVLELLP-PDEEEEEEE-ETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERD 224 (444)
T ss_pred hhhccCHHHHHHHHHhhcC-Ccccccccc-cCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEEC
Confidence 9999999999887776643 111111111 12578999999999999999999999999999999999999643 333
Q ss_pred CCeEEEEeCCCCcCC
Q 017132 261 GKDLEFLDSPGIIPM 275 (376)
Q Consensus 261 ~~~i~l~DTpG~i~~ 275 (376)
++++.++||.|+.+.
T Consensus 225 ~~~~~liDTAGiRrk 239 (444)
T COG1160 225 GRKYVLIDTAGIRRK 239 (444)
T ss_pred CeEEEEEECCCCCcc
Confidence 778999999999854
No 17
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.92 E-value=1.5e-24 Score=195.09 Aligned_cols=150 Identities=31% Similarity=0.387 Sum_probs=117.5
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHh----HHHHHHHH--HHhC---ceEE
Q 017132 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD----RNAWATYF--AKQG---TKVI 180 (376)
Q Consensus 110 ~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~----~~~w~~~~--~~~g---~~vi 180 (376)
+...+.+.++++|+|++|+|++++..+....+.....++|+++|+||+|+.+.+. ...|...+ ...+ ..++
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVI 103 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEE
Confidence 3556667899999999999999987777776644445789999999999986432 33454111 2222 2588
Q ss_pred EeeCcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcc--------cccccCCCCce
Q 017132 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR--------MCPAAPRPGVT 252 (376)
Q Consensus 181 ~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~--------~~~v~~~pg~T 252 (376)
++|+++|.|+.+|.+.+.+..+ ...++++||.||||||||||+|.+.. .+.++..||||
T Consensus 104 ~vSA~~~~gi~eL~~~l~~~l~-------------~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT 170 (190)
T cd01855 104 LISAKKGWGVEELINAIKKLAK-------------KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT 170 (190)
T ss_pred EEECCCCCCHHHHHHHHHHHhh-------------cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee
Confidence 9999999999998877766543 12359999999999999999999753 35678999999
Q ss_pred eEEEEEEeCCeEEEEeCCCC
Q 017132 253 RVLKWVRFGKDLEFLDSPGI 272 (376)
Q Consensus 253 ~~~~~~~~~~~i~l~DTpG~ 272 (376)
++.+.+.++.++.++|||||
T Consensus 171 ~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 171 LDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred eeeEEEecCCCCEEEeCcCC
Confidence 99999999878999999997
No 18
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.92 E-value=5.6e-24 Score=185.24 Aligned_cols=151 Identities=34% Similarity=0.549 Sum_probs=122.7
Q ss_pred HHHH-HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCc
Q 017132 112 KELK-DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM 188 (376)
Q Consensus 112 k~l~-~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~ 188 (376)
+++. .+++++|++++|+|++.|....+.++..++ .++|+++|+||+|+.+......|..+....+..++++|++++.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 82 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERL 82 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccc
Confidence 3444 556779999999999998877777776654 3789999999999987766566654444445678999999999
Q ss_pred chhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeCCeEEEEe
Q 017132 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLD 268 (376)
Q Consensus 189 gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~~~i~l~D 268 (376)
|+++|.+.+.++.+.. ....+++++|+||||||||+|+|.+.....+++.+|+|++.+.+..+..+.++|
T Consensus 83 gi~~L~~~l~~~~~~~----------~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D 152 (156)
T cd01859 83 GTKILRRTIKELAKID----------GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLD 152 (156)
T ss_pred cHHHHHHHHHHHHhhc----------CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEE
Confidence 9999988887665421 134578999999999999999999877778899999999999888888899999
Q ss_pred CCCC
Q 017132 269 SPGI 272 (376)
Q Consensus 269 TpG~ 272 (376)
|||+
T Consensus 153 tpGi 156 (156)
T cd01859 153 TPGV 156 (156)
T ss_pred CcCC
Confidence 9997
No 19
>PRK13796 GTPase YqeH; Provisional
Probab=99.90 E-value=4.2e-23 Score=203.61 Aligned_cols=146 Identities=27% Similarity=0.330 Sum_probs=117.8
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCH----HhHHHHHHHHHH-hCc---eEEEeeCcCC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATYFAK-QGT---KVIFSNGQLG 187 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~----~~~~~w~~~~~~-~g~---~vi~iSa~~g 187 (376)
+.-+..++|++|+|+.+..++..+++.++..++|+++|+||+||+++ +....|...+.+ .|. .++++|++++
T Consensus 65 ~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g 144 (365)
T PRK13796 65 GIGDSDALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKG 144 (365)
T ss_pred hhcccCcEEEEEEECccCCCchhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCC
Confidence 33344459999999999988889999888888999999999999863 345567665443 343 6889999999
Q ss_pred cchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhc-----ccccccCCCCceeEEEEEEeCC
Q 017132 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLKWVRFGK 262 (376)
Q Consensus 188 ~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~-----~~~~v~~~pg~T~~~~~~~~~~ 262 (376)
.|+.+|.+.+.+... ..++++||+||||||||||+|.+. +.+.+++.||||++.+++.++.
T Consensus 145 ~gI~eL~~~I~~~~~--------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~ 210 (365)
T PRK13796 145 HGIDELLEAIEKYRE--------------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD 210 (365)
T ss_pred CCHHHHHHHHHHhcC--------------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC
Confidence 999988877755421 125899999999999999999854 2456899999999999999988
Q ss_pred eEEEEeCCCCcCC
Q 017132 263 DLEFLDSPGIIPM 275 (376)
Q Consensus 263 ~i~l~DTpG~i~~ 275 (376)
+..|+|||||+.+
T Consensus 211 ~~~l~DTPGi~~~ 223 (365)
T PRK13796 211 GSFLYDTPGIIHR 223 (365)
T ss_pred CcEEEECCCcccc
Confidence 8899999999853
No 20
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.89 E-value=1e-24 Score=203.90 Aligned_cols=217 Identities=16% Similarity=0.131 Sum_probs=150.4
Q ss_pred cccchhhHHhhcCCee--eEEeecCCCCCCCccccchhhhcc---cccCCcEEEEcCCCCCcccChhHHHHHHHH--HH-
Q 017132 44 SLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEECDW---ADLDADLYYWTKSLRPVQWYPGHIAKTEKE--LK- 115 (376)
Q Consensus 44 ~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~ig~gk~e~~~---~~~~~~~vi~~~~L~~~qw~PGh~~~~~k~--l~- 115 (376)
+|.|+..|+.|++.-+ +.+++...++|++|+|+|++|+++ .+.+ ...+|++..++.+ ..+.++. ..
T Consensus 7 qleea~aLvdtl~~~nvv~t~~kpv~~~rk~~~gsGn~e~Li~~i~aa~-at~~f~nv~a~~a-----~~~~ek~r~~~V 80 (410)
T KOG0410|consen 7 QLEEANALVDTLQQRNVVRTWAKPVLDNRKTYIGSGNVEELIIEIFAAH-ATTKFANVQAELA-----ALMYEKSRLVRV 80 (410)
T ss_pred HHHHHHHHHHhhccchhhhheeeeccCCcceeeecCcHHHHHHHHhcCc-cceeeecccccch-----hHHHHHhhhcce
Confidence 5778889999998776 999999999999999999998733 3344 5788998888776 4444443 33
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcchhh---
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK--- 192 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi~~--- 192 (376)
.+.||..+|+.+|.+++...+...+++ +...|.+ ..+....|.+.+++.|..+ . |.|...
T Consensus 81 rvfDr~~~vl~if~q~a~T~earlqva--lAempy~---------~~rl~r~~~hl~r~~g~~v-~-----gsges~id~ 143 (410)
T KOG0410|consen 81 RVFDRRHTVLQIFEQEAVTAEARLQVA--LAEMPYV---------GGRLERELQHLRRQSGGQV-K-----GSGESIIDR 143 (410)
T ss_pred eeecchhhHHHHHHHHhhhHHHHHhhh--hhcCccc---------cchHHHHHHHHHhcCCCcc-c-----CccchHhHH
Confidence 568999999999988776555444443 2223322 2333467877776666542 1 333322
Q ss_pred ------------hhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe
Q 017132 193 ------------LSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF 260 (376)
Q Consensus 193 ------------L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~ 260 (376)
+++.|+.+.+++ ..|..+...+ ...|++|||||+|||||||+|++ ......+++|+|+|++....
T Consensus 144 d~~rllr~kea~lrKeL~~vrrkr-~~r~gr~~~s-~pviavVGYTNaGKsTLikaLT~-Aal~p~drLFATLDpT~h~a 220 (410)
T KOG0410|consen 144 DIRRLLRIKEAQLRKELQRVRRKR-QRRVGREGES-SPVIAVVGYTNAGKSTLIKALTK-AALYPNDRLFATLDPTLHSA 220 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hhhhccccCC-CceEEEEeecCccHHHHHHHHHh-hhcCccchhheeccchhhhc
Confidence 222333332222 1222222223 34599999999999999999994 55788999999999875432
Q ss_pred ----CCeEEEEeCCCCcCCCCCcHHHHHHH
Q 017132 261 ----GKDLEFLDSPGIIPMRISDQAAAIKL 286 (376)
Q Consensus 261 ----~~~i~l~DTpG~i~~~~~~~~~~~kl 286 (376)
+..++++||+|||...|..+..||.-
T Consensus 221 ~Lpsg~~vlltDTvGFisdLP~~LvaAF~A 250 (410)
T KOG0410|consen 221 HLPSGNFVLLTDTVGFISDLPIQLVAAFQA 250 (410)
T ss_pred cCCCCcEEEEeechhhhhhCcHHHHHHHHH
Confidence 67899999999999999888888873
No 21
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.89 E-value=1.1e-22 Score=200.36 Aligned_cols=154 Identities=26% Similarity=0.341 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH----hHHHHHH-HHHHhCc---eE
Q 017132 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWAT-YFAKQGT---KV 179 (376)
Q Consensus 108 ~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~----~~~~w~~-~~~~~g~---~v 179 (376)
..+.+.+....+.+++|++|+|+.+...+..+++.+.+..+|+++|+||+||+++. ....|.. ++++.|. .+
T Consensus 51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i 130 (360)
T TIGR03597 51 DDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDI 130 (360)
T ss_pred HHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcE
Confidence 35556666777899999999999999999999999888889999999999998653 4456654 3444554 58
Q ss_pred EEeeCcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcc-----cccccCCCCceeE
Q 017132 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR-----MCPAAPRPGVTRV 254 (376)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~-----~~~v~~~pg~T~~ 254 (376)
+++|+++|.|+++|.+.+.++.. ..+|++||.||||||||||+|++.. .+.+++.||||++
T Consensus 131 ~~vSAk~g~gv~eL~~~l~~~~~--------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~ 196 (360)
T TIGR03597 131 ILVSAKKGNGIDELLDKIKKARN--------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD 196 (360)
T ss_pred EEecCCCCCCHHHHHHHHHHHhC--------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee
Confidence 88999999999998877765421 1369999999999999999999753 3678999999999
Q ss_pred EEEEEeCCeEEEEeCCCCcCC
Q 017132 255 LKWVRFGKDLEFLDSPGIIPM 275 (376)
Q Consensus 255 ~~~~~~~~~i~l~DTpG~i~~ 275 (376)
.+.+.++.++.++|||||...
T Consensus 197 ~~~~~~~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 197 LIEIPLDDGHSLYDTPGIINS 217 (360)
T ss_pred EEEEEeCCCCEEEECCCCCCh
Confidence 998888788999999999854
No 22
>PRK12289 GTPase RsgA; Reviewed
Probab=99.88 E-value=3.6e-22 Score=195.25 Aligned_cols=143 Identities=22% Similarity=0.312 Sum_probs=118.6
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcch
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi 190 (376)
..+..+|.|+.|+|+..|... ...+++++ .+.|.++|+||+||++..+...|.+.+...|..++++|+.++.|+
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~-~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI 163 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLD-PWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGL 163 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCC-HHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCH
Confidence 348899999999999876432 22445544 378999999999999887778898888888889999999999998
Q ss_pred hhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCC-------ceeEEEEEEeCCe
Q 017132 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGKD 263 (376)
Q Consensus 191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-------~T~~~~~~~~~~~ 263 (376)
.+|.+.+.. ..++|+|.||||||||||+|.+.....+++.+| ||++.+++.+..+
T Consensus 164 ~eL~~~L~~------------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g 225 (352)
T PRK12289 164 EALLEQLRN------------------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG 225 (352)
T ss_pred HHHhhhhcc------------------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC
Confidence 877665421 137999999999999999999988888999998 9999999998666
Q ss_pred EEEEeCCCCcCCCC
Q 017132 264 LEFLDSPGIIPMRI 277 (376)
Q Consensus 264 i~l~DTpG~i~~~~ 277 (376)
.+|+|||||..+..
T Consensus 226 ~~liDTPG~~~~~l 239 (352)
T PRK12289 226 GLLADTPGFNQPDL 239 (352)
T ss_pred cEEEeCCCcccccc
Confidence 79999999987654
No 23
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.86 E-value=3.6e-21 Score=180.04 Aligned_cols=142 Identities=23% Similarity=0.287 Sum_probs=113.4
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHhH-HHHHHHHHHhCceEEEeeCcCCcch
Q 017132 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADR-NAWATYFAKQGTKVIFSNGQLGMGT 190 (376)
Q Consensus 117 vidr~dlILeV~DaR~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~~-~~w~~~~~~~g~~vi~iSa~~g~gi 190 (376)
.+..+|.++.|+|+.+|..+.+. +.+++ .+.|.++|+||+||.+.... .+|.+.+.+.|..++++|+++|.|+
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi 111 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGL 111 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhH
Confidence 58899999999999988765543 44543 36899999999999865443 3677778777888999999999998
Q ss_pred hhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCC-------ceeEEEEEEeCCe
Q 017132 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGKD 263 (376)
Q Consensus 191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-------~T~~~~~~~~~~~ 263 (376)
.+|.+.+.. ..++++|.||||||||||+|.+.....+++.++ ||++.+++.+ .+
T Consensus 112 ~eLf~~l~~------------------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~ 172 (245)
T TIGR00157 112 KELIEALQN------------------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HG 172 (245)
T ss_pred HHHHhhhcC------------------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CC
Confidence 887655421 148999999999999999999877666666543 9999999988 46
Q ss_pred EEEEeCCCCcCCCCC
Q 017132 264 LEFLDSPGIIPMRIS 278 (376)
Q Consensus 264 i~l~DTpG~i~~~~~ 278 (376)
.+|+|||||....+.
T Consensus 173 ~~liDtPG~~~~~l~ 187 (245)
T TIGR00157 173 GLIADTPGFNEFGLW 187 (245)
T ss_pred cEEEeCCCccccCCC
Confidence 699999999876554
No 24
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=99.82 E-value=1.4e-21 Score=154.61 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=77.6
Q ss_pred ccccchhhHHhhcCCee--eEEeecCCCCCCCccccchhhh---cccccCCcEEEEcCCCCCcccChhHHHHHHHHHH-H
Q 017132 43 SSLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEEC---DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK-D 116 (376)
Q Consensus 43 ~~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~ig~gk~e~---~~~~~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~-~ 116 (376)
.+|.|+..||+|||++| +++|++++|||+||+|+||+|+ ++++.++|+|+||++|||+| ++|+++.+. +
T Consensus 8 ~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q-----~rNLe~~~~~~ 82 (95)
T PF13167_consen 8 ESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQ-----QRNLEKALGVK 82 (95)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHHH-----HHHHHHHHCCe
Confidence 37999999999999999 8999999999999999999966 77889999999999999999 999999998 9
Q ss_pred HhhhcCeEEEEEe
Q 017132 117 QLKLMDVVIEVRD 129 (376)
Q Consensus 117 vidr~dlILeV~D 129 (376)
++||+.|||+||.
T Consensus 83 V~DRt~LIL~IFA 95 (95)
T PF13167_consen 83 VIDRTQLILEIFA 95 (95)
T ss_pred eeccccHHHHHcC
Confidence 9999999999983
No 25
>PRK12288 GTPase RsgA; Reviewed
Probab=99.81 E-value=2.6e-19 Score=175.02 Aligned_cols=141 Identities=23% Similarity=0.323 Sum_probs=110.6
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHH---hHHHHHHHHHHhCceEEEeeCcCCc
Q 017132 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMA---DRNAWATYFAKQGTKVIFSNGQLGM 188 (376)
Q Consensus 117 vidr~dlILeV~DaR~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~---~~~~w~~~~~~~g~~vi~iSa~~g~ 188 (376)
+..++|.++.|++.. |..+.. .+++++ .+.|.++|+||+||++.. ....|.+.+...|..++++|+.++.
T Consensus 117 iaANvD~vlIV~s~~-p~~s~~-~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 117 IAANIDQIVIVSAVL-PELSLN-IIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEEccEEEEEEeCC-CCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 357899988888754 333322 344443 267999999999998754 3466777777788899999999999
Q ss_pred chhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCC-------ceeEEEEEEeC
Q 017132 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFG 261 (376)
Q Consensus 189 gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-------~T~~~~~~~~~ 261 (376)
|+.+|.+.+.. ..++|+|.||||||||||+|.+.....+++.++ ||+..+++.+.
T Consensus 195 GideL~~~L~~------------------ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~ 256 (347)
T PRK12288 195 GLEELEAALTG------------------RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP 256 (347)
T ss_pred CHHHHHHHHhh------------------CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec
Confidence 99888766531 027899999999999999999988888888875 89999999997
Q ss_pred CeEEEEeCCCCcCCCC
Q 017132 262 KDLEFLDSPGIIPMRI 277 (376)
Q Consensus 262 ~~i~l~DTpG~i~~~~ 277 (376)
.+..|+|||||....+
T Consensus 257 ~~~~liDTPGir~~~l 272 (347)
T PRK12288 257 HGGDLIDSPGVREFGL 272 (347)
T ss_pred CCCEEEECCCCCcccC
Confidence 7778999999986544
No 26
>PRK00098 GTPase RsgA; Reviewed
Probab=99.80 E-value=3e-19 Score=171.76 Aligned_cols=141 Identities=23% Similarity=0.286 Sum_probs=111.4
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCC-CHHhHHHHHHHHHHhCceEEEeeCcCCcc
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMI-SMADRNAWATYFAKQGTKVIFSNGQLGMG 189 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~-~~~~~~~w~~~~~~~g~~vi~iSa~~g~g 189 (376)
.++..+|+++.|+|+..|....+ .+++++ .+.|.++|+||+||. +......|...+.+.|..++++|++++.|
T Consensus 76 ~iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 76 LIAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred ceeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 34799999999999987754432 233332 368999999999997 44455667777777788899999999999
Q ss_pred hhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCC-------ceeEEEEEEeCC
Q 017132 190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFGK 262 (376)
Q Consensus 190 i~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-------~T~~~~~~~~~~ 262 (376)
+.+|.+.++ ...++++|.+|||||||||+|++.....+++.++ ||++.+++.++.
T Consensus 155 i~~L~~~l~------------------gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~ 216 (298)
T PRK00098 155 LDELKPLLA------------------GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG 216 (298)
T ss_pred HHHHHhhcc------------------CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC
Confidence 888765541 1248999999999999999999877777777664 888889988877
Q ss_pred eEEEEeCCCCcCC
Q 017132 263 DLEFLDSPGIIPM 275 (376)
Q Consensus 263 ~i~l~DTpG~i~~ 275 (376)
..+|+|||||...
T Consensus 217 ~~~~~DtpG~~~~ 229 (298)
T PRK00098 217 GGLLIDTPGFSSF 229 (298)
T ss_pred CcEEEECCCcCcc
Confidence 7899999999853
No 27
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.80 E-value=6.4e-19 Score=177.67 Aligned_cols=162 Identities=25% Similarity=0.311 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHHHhCc-eEEEeeC
Q 017132 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNG 184 (376)
Q Consensus 108 ~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~-~vi~iSa 184 (376)
....++....++.+|+|++|+|++.+....+.++.+++. ++|.++|.||+|+.+.+... ..+.+.|. +++++|+
T Consensus 66 ~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~---~~~~~lg~~~~~~vSa 142 (429)
T TIGR03594 66 KQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVA---AEFYSLGFGEPIPISA 142 (429)
T ss_pred HHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccH---HHHHhcCCCCeEEEeC
Confidence 445556667789999999999999988777777777764 78999999999998654321 22345564 7899999
Q ss_pred cCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---C
Q 017132 185 QLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---G 261 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~ 261 (376)
.+|.|+.++.+.+.+........ .......++|+++|.||||||||+|+|++.....+++.+|+|++.....+ +
T Consensus 143 ~~g~gv~~ll~~i~~~l~~~~~~---~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~ 219 (429)
T TIGR03594 143 EHGRGIGDLLDAILELLPEEEEE---EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG 219 (429)
T ss_pred CcCCChHHHHHHHHHhcCccccc---ccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC
Confidence 99999998877665543321110 11112457899999999999999999998887889999999999643332 5
Q ss_pred CeEEEEeCCCCcCC
Q 017132 262 KDLEFLDSPGIIPM 275 (376)
Q Consensus 262 ~~i~l~DTpG~i~~ 275 (376)
..+.++||||+...
T Consensus 220 ~~~~liDT~G~~~~ 233 (429)
T TIGR03594 220 KKYLLIDTAGIRRK 233 (429)
T ss_pred cEEEEEECCCcccc
Confidence 57999999999754
No 28
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.80 E-value=5.5e-19 Score=169.12 Aligned_cols=142 Identities=21% Similarity=0.249 Sum_probs=110.2
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcch
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi 190 (376)
-++..+|+++.|+|++.|..+. ..+++++ .++|.++|+||+||.+......|..++.+.|..++++|++++.|+
T Consensus 74 ~i~anvD~vllV~d~~~p~~s~-~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 152 (287)
T cd01854 74 VIAANVDQLVIVVSLNEPFFNP-RLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGL 152 (287)
T ss_pred eEEEeCCEEEEEEEcCCCCCCH-HHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccH
Confidence 3589999999999999887221 2344443 378999999999998875555676666667888999999999998
Q ss_pred hhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCC-------CCceeEEEEEEeCCe
Q 017132 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-------PGVTRVLKWVRFGKD 263 (376)
Q Consensus 191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~-------pg~T~~~~~~~~~~~ 263 (376)
++|...++. ..++++|.+|||||||||+|++.....++.. .+||++.+.+++...
T Consensus 153 ~~L~~~L~~------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~ 214 (287)
T cd01854 153 DELREYLKG------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG 214 (287)
T ss_pred HHHHhhhcc------------------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC
Confidence 877665431 2489999999999999999998765554433 348999999888766
Q ss_pred EEEEeCCCCcCCC
Q 017132 264 LEFLDSPGIIPMR 276 (376)
Q Consensus 264 i~l~DTpG~i~~~ 276 (376)
.+++|||||....
T Consensus 215 ~~liDtPG~~~~~ 227 (287)
T cd01854 215 GLLIDTPGFREFG 227 (287)
T ss_pred CEEEECCCCCccC
Confidence 7899999997543
No 29
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=1e-18 Score=178.27 Aligned_cols=159 Identities=24% Similarity=0.236 Sum_probs=115.1
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHHHhC-ceEEEeeCcC
Q 017132 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQL 186 (376)
Q Consensus 110 ~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g-~~vi~iSa~~ 186 (376)
...+....+..+|+||.|+|++.+.+.....+..++. ++|+++|+||+|+..... ...+ +...| ...+++||++
T Consensus 107 ~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~--~~~~-~~~~g~~~~~~iSA~~ 183 (472)
T PRK03003 107 VAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEA--DAAA-LWSLGLGEPHPVSALH 183 (472)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccch--hhHH-HHhcCCCCeEEEEcCC
Confidence 4444556789999999999999887766666666654 689999999999965321 1112 22334 3567899999
Q ss_pred CcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-CCe
Q 017132 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKD 263 (376)
Q Consensus 187 g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-~~~ 263 (376)
|.|+.+|.+.+.+....... ........++|+++|.||||||||+|+|++.....+++.||+|+|... +.. +..
T Consensus 184 g~gi~eL~~~i~~~l~~~~~---~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~ 260 (472)
T PRK03003 184 GRGVGDLLDAVLAALPEVPR---VGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT 260 (472)
T ss_pred CCCcHHHHHHHHhhcccccc---cccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE
Confidence 99999987766544322111 111112468999999999999999999998877778999999998532 223 557
Q ss_pred EEEEeCCCCcC
Q 017132 264 LEFLDSPGIIP 274 (376)
Q Consensus 264 i~l~DTpG~i~ 274 (376)
+.|+||||+..
T Consensus 261 ~~l~DTaG~~~ 271 (472)
T PRK03003 261 WRFVDTAGLRR 271 (472)
T ss_pred EEEEECCCccc
Confidence 89999999864
No 30
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=2.1e-18 Score=174.23 Aligned_cols=159 Identities=25% Similarity=0.248 Sum_probs=117.7
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHHHhCc-eEEEeeCcC
Q 017132 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQL 186 (376)
Q Consensus 110 ~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~-~vi~iSa~~ 186 (376)
..++....+..+|+|++|+|++.+....+.++..++. ++|.++|+||+|+.+.+. .. ..+.+.|. .++++|+.+
T Consensus 70 ~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~--~~-~~~~~lg~~~~~~iSa~~ 146 (435)
T PRK00093 70 IREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEA--DA-YEFYSLGLGEPYPISAEH 146 (435)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchh--hH-HHHHhcCCCCCEEEEeeC
Confidence 3444456789999999999999887777777777664 689999999999765322 11 22234453 478999999
Q ss_pred CcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEE---eCCe
Q 017132 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR---FGKD 263 (376)
Q Consensus 187 g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~---~~~~ 263 (376)
|.|+.++.+.+.+........ ......++|+++|.||||||||+|+|++...+.+++.+|+|++..... -+..
T Consensus 147 g~gv~~l~~~I~~~~~~~~~~----~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~ 222 (435)
T PRK00093 147 GRGIGDLLDAILEELPEEEEE----DEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK 222 (435)
T ss_pred CCCHHHHHHHHHhhCCccccc----cccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee
Confidence 999988877665422211100 001246899999999999999999999988888999999999965333 2567
Q ss_pred EEEEeCCCCcCC
Q 017132 264 LEFLDSPGIIPM 275 (376)
Q Consensus 264 i~l~DTpG~i~~ 275 (376)
+.++||||+...
T Consensus 223 ~~lvDT~G~~~~ 234 (435)
T PRK00093 223 YTLIDTAGIRRK 234 (435)
T ss_pred EEEEECCCCCCC
Confidence 999999999754
No 31
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.76 E-value=6.1e-18 Score=180.45 Aligned_cols=163 Identities=25% Similarity=0.237 Sum_probs=117.1
Q ss_pred HHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHHHhC-ceEEEeeCc
Q 017132 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQ 185 (376)
Q Consensus 109 ~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g-~~vi~iSa~ 185 (376)
...++....++.+|+||+|+|++.+....+.++..++. ++|+++|+||+|+...... ...+...| ..++++|++
T Consensus 343 ~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~---~~~~~~lg~~~~~~iSA~ 419 (712)
T PRK09518 343 AIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYD---AAEFWKLGLGEPYPISAM 419 (712)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhh---HHHHHHcCCCCeEEEECC
Confidence 34555567789999999999999877766666666653 7899999999998754321 11222334 356789999
Q ss_pred CCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEE--Ee-CC
Q 017132 186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GK 262 (376)
Q Consensus 186 ~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~--~~-~~ 262 (376)
+|.|+.+|.+.+.+....... ....-.....++|+++|.||||||||+|+|++.+...+++.||||++.... .. +.
T Consensus 420 ~g~GI~eLl~~i~~~l~~~~~-~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~ 498 (712)
T PRK09518 420 HGRGVGDLLDEALDSLKVAEK-TSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE 498 (712)
T ss_pred CCCCchHHHHHHHHhcccccc-cccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC
Confidence 999999987766544332111 000000123478999999999999999999988777789999999996432 22 56
Q ss_pred eEEEEeCCCCcCC
Q 017132 263 DLEFLDSPGIIPM 275 (376)
Q Consensus 263 ~i~l~DTpG~i~~ 275 (376)
.+.++||||+...
T Consensus 499 ~~~liDTaG~~~~ 511 (712)
T PRK09518 499 DWLFIDTAGIKRR 511 (712)
T ss_pred EEEEEECCCcccC
Confidence 7889999999743
No 32
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.64 E-value=2.8e-15 Score=141.67 Aligned_cols=141 Identities=24% Similarity=0.325 Sum_probs=106.9
Q ss_pred hhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHhHH--HHHHHHHHhCceEEEeeCcCCcch
Q 017132 118 LKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRN--AWATYFAKQGTKVIFSNGQLGMGT 190 (376)
Q Consensus 118 idr~dlILeV~DaR~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~--~w~~~~~~~g~~vi~iSa~~g~gi 190 (376)
+...|-++.|+.+-.|.-+.+ .+++++ .+..-++++||+||++.++.. ++...+...|+.++++|++.+.|+
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~-~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~ 155 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTN-LLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGL 155 (301)
T ss_pred ccccceEEEEEeccCCCCCHH-HHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccH
Confidence 444677777887777755533 355544 366778889999999877655 566777888999999999999998
Q ss_pred hhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccC---CC----CceeEEEEEEeCCe
Q 017132 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP---RP----GVTRVLKWVRFGKD 263 (376)
Q Consensus 191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~---~p----g~T~~~~~~~~~~~ 263 (376)
..|.+.++. -...++|-++||||||+|+|.+.....|++ .. .||++...+.+..+
T Consensus 156 ~~l~~~l~~------------------~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~g 217 (301)
T COG1162 156 EELAELLAG------------------KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGG 217 (301)
T ss_pred HHHHHHhcC------------------CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCC
Confidence 887665421 137899999999999999999765555443 22 49999999999777
Q ss_pred EEEEeCCCCcCCCC
Q 017132 264 LEFLDSPGIIPMRI 277 (376)
Q Consensus 264 i~l~DTpG~i~~~~ 277 (376)
-.|+|||||-...+
T Consensus 218 G~iiDTPGf~~~~l 231 (301)
T COG1162 218 GWIIDTPGFRSLGL 231 (301)
T ss_pred CEEEeCCCCCccCc
Confidence 89999999976544
No 33
>PRK01889 GTPase RsgA; Reviewed
Probab=99.61 E-value=2.4e-15 Score=148.05 Aligned_cols=143 Identities=20% Similarity=0.264 Sum_probs=102.1
Q ss_pred hhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHh-HHHHHHHHHHhCceEEEeeCcCCcchh
Q 017132 118 LKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTM 191 (376)
Q Consensus 118 idr~dlILeV~DaR~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~-~~~w~~~~~~~g~~vi~iSa~~g~gi~ 191 (376)
+..+|.++.|+++.-+... ..+++++ .+.+.++|+||+||++..+ ...|...+ ..|..++++|++++.|+.
T Consensus 110 aANvD~vliV~s~~p~~~~--~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~-~~g~~Vi~vSa~~g~gl~ 186 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNL--RRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL-APGVPVLAVSALDGEGLD 186 (356)
T ss_pred EEeCCEEEEEEecCCCCCh--hHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh-CCCCcEEEEECCCCccHH
Confidence 6889999999998632222 2455543 3677899999999997532 22333333 457889999999999988
Q ss_pred hhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCC-------CceeEEEEEEeCCeE
Q 017132 192 KLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRFGKDL 264 (376)
Q Consensus 192 ~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p-------g~T~~~~~~~~~~~i 264 (376)
.|...+.. .-+++++|.+|+|||||+|+|++.....++... .+|+..++..+..+.
T Consensus 187 ~L~~~L~~-----------------g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~ 249 (356)
T PRK01889 187 VLAAWLSG-----------------GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGG 249 (356)
T ss_pred HHHHHhhc-----------------CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCC
Confidence 88766531 125899999999999999999986555544332 366666777776677
Q ss_pred EEEeCCCCcCCCCCcH
Q 017132 265 EFLDSPGIIPMRISDQ 280 (376)
Q Consensus 265 ~l~DTpG~i~~~~~~~ 280 (376)
.++|||||....+.+.
T Consensus 250 ~l~DtpG~~~~~l~~~ 265 (356)
T PRK01889 250 LLIDTPGMRELQLWDA 265 (356)
T ss_pred eecCCCchhhhcccCc
Confidence 8999999976554443
No 34
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.53 E-value=2e-14 Score=135.95 Aligned_cols=69 Identities=29% Similarity=0.509 Sum_probs=56.7
Q ss_pred CCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcCCCCCcHHH
Q 017132 213 LLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISDQAA 282 (376)
Q Consensus 213 ~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~~~~~~~~~ 282 (376)
..+..++|.+.||||||||||+++|++.+ ..+++.||||+.+..-++ +..++++||||++....++...
T Consensus 164 Idp~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~ 235 (346)
T COG1084 164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNE 235 (346)
T ss_pred CCCCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcH
Confidence 34456789999999999999999999765 799999999999876555 3479999999999876654333
No 35
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.49 E-value=3.3e-14 Score=123.55 Aligned_cols=61 Identities=34% Similarity=0.559 Sum_probs=46.7
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-CCeEEEEeCCCCcCCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPMRISD 279 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-~~~i~l~DTpG~i~~~~~~ 279 (376)
++|++||.||||||||||+|+|.+ ..+++.||+|.+... ++. +..+.++||||+.......
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s 64 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKS 64 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCC
Confidence 469999999999999999999987 889999999999654 333 5689999999997654433
No 36
>COG1159 Era GTPase [General function prediction only]
Probab=99.47 E-value=6e-14 Score=131.56 Aligned_cols=58 Identities=34% Similarity=0.614 Sum_probs=50.8
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE-EEEEe--CCeEEEEeCCCCcCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRF--GKDLEFLDSPGIIPMR 276 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~-~~~~~--~~~i~l~DTpG~i~~~ 276 (376)
-|+|||.||||||||+|+|.|.+.+.|+++|.|||+. +.+.. +.+++++|||||..++
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk 68 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc
Confidence 4999999999999999999999999999999999994 33333 5689999999998773
No 37
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.44 E-value=1.4e-13 Score=136.14 Aligned_cols=60 Identities=35% Similarity=0.483 Sum_probs=53.3
Q ss_pred CCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
..+++++|+|.||||||||+|+|++++++.|++.||||||+-...+ |-.+.|+||.|+..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRe 277 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRE 277 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCccc
Confidence 3568999999999999999999999999999999999999765443 56789999999974
No 38
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.41 E-value=3.5e-13 Score=117.43 Aligned_cols=95 Identities=25% Similarity=0.332 Sum_probs=69.0
Q ss_pred HHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccc
Q 017132 166 NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPA 245 (376)
Q Consensus 166 ~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v 245 (376)
++|.+.+++.|++++++|+..+.|+.+|++.++. ..++++|-++||||||||+|.+.....+
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~------------------k~~vl~G~SGvGKSSLiN~L~~~~~~~t 63 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG------------------KTSVLLGQSGVGKSSLINALLPEAKQKT 63 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT------------------SEEEEECSTTSSHHHHHHHHHTSS----
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC------------------CEEEEECCCCCCHHHHHHHHHhhcchhh
Confidence 4678889999999999999999999888766431 2489999999999999999998754444
Q ss_pred cC---C----CCceeEEEEEEeCCeEEEEeCCCCcCCCCC
Q 017132 246 AP---R----PGVTRVLKWVRFGKDLEFLDSPGIIPMRIS 278 (376)
Q Consensus 246 ~~---~----pg~T~~~~~~~~~~~i~l~DTpG~i~~~~~ 278 (376)
+. . -.||+..+++.+..+..|+|||||-...+.
T Consensus 64 ~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 64 GEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp S--------------SEEEEEETTSEEEECSHHHHT--GC
T ss_pred hhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCccccc
Confidence 32 2 248888899999888999999999765443
No 39
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.41 E-value=1.7e-13 Score=135.17 Aligned_cols=59 Identities=39% Similarity=0.583 Sum_probs=51.7
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEE---EeCCeEEEEeCCCCcCCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV---RFGKDLEFLDSPGIIPMR 276 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~---~~~~~i~l~DTpG~i~~~ 276 (376)
+.|+|||.||||||||+|+|++++.+.|+++||+|||...- ..+..+.++||.|+....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~ 65 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGD 65 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCC
Confidence 45999999999999999999999999999999999996532 236789999999998644
No 40
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.38 E-value=5e-13 Score=110.24 Aligned_cols=58 Identities=38% Similarity=0.633 Sum_probs=49.4
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEE--Ee-CCeEEEEeCCCCcCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPMR 276 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~--~~-~~~i~l~DTpG~i~~~ 276 (376)
+|+++|.||||||||+|+|++.+...+++.+++|++.... .. +..+.++|||||....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~ 61 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGE 61 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccc
Confidence 5899999999999999999987777899999999998442 33 4567999999998653
No 41
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.31 E-value=2.2e-12 Score=115.04 Aligned_cols=59 Identities=31% Similarity=0.521 Sum_probs=53.4
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcc-cccccCCCCceeEEEEEEeCCeEEEEeCCCCcCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~i~~ 275 (376)
.+-|+++|.+|||||||||+|++++ -+.+|.+||.|+.+..+.++..+.++|-||+=..
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyA 83 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYA 83 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccc
Confidence 4569999999999999999999966 4899999999999999999888999999999543
No 42
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=3.8e-12 Score=125.92 Aligned_cols=59 Identities=37% Similarity=0.537 Sum_probs=52.3
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEE--e-CCeEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~--~-~~~i~l~DTpG~i~ 274 (376)
.++.|+|+|.||||||||+|+|+++.+..|++.||||||..... + |..++|+||.|+..
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe 328 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE 328 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEecccccc
Confidence 45789999999999999999999999999999999999964333 3 67899999999987
No 43
>PTZ00258 GTP-binding protein; Provisional
Probab=99.22 E-value=1.1e-11 Score=122.72 Aligned_cols=59 Identities=36% Similarity=0.490 Sum_probs=48.7
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe--------------------CCeEEEEeCCCCcCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------GKDLEFLDSPGIIPM 275 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~--------------------~~~i~l~DTpG~i~~ 275 (376)
..++|+|||+||||||||+|+|++.+ +.+++.||||+++..-.+ +.++.++||||++..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 45789999999999999999999765 799999999998654222 124899999999964
No 44
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.21 E-value=1.1e-11 Score=123.44 Aligned_cols=57 Identities=28% Similarity=0.389 Sum_probs=48.2
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEE--eC--CeEEEEeCCCCcCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--FG--KDLEFLDSPGIIPMR 276 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~--~~--~~i~l~DTpG~i~~~ 276 (376)
.|+|||+||||||||||+|++.+ ..++++||||+.+..-. .+ ..++++||||++.+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a 221 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGA 221 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccc
Confidence 59999999999999999999865 68999999999976433 33 359999999998653
No 45
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.20 E-value=2.3e-11 Score=123.42 Aligned_cols=59 Identities=36% Similarity=0.487 Sum_probs=50.0
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEE--e-CCeEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~--~-~~~i~l~DTpG~i~ 274 (376)
..++|+++|+||||||||+|+|++.+...+++.||+|+|..... + +..+.++||||+..
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~ 275 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRE 275 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCC
Confidence 35789999999999999999999877677999999999975433 3 45789999999864
No 46
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.20 E-value=1.6e-11 Score=116.63 Aligned_cols=57 Identities=32% Similarity=0.537 Sum_probs=47.8
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE-EEEe--CCeEEEEeCCCCcCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRF--GKDLEFLDSPGIIPM 275 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~-~~~~--~~~i~l~DTpG~i~~ 275 (376)
+|+++|+||||||||+|+|++.+...++++|+||++.. .+.. +.++.++||||+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~ 61 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEK 61 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCC
Confidence 48999999999999999999988778999999999843 2222 346899999999864
No 47
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.18 E-value=3.8e-11 Score=113.54 Aligned_cols=85 Identities=28% Similarity=0.380 Sum_probs=60.7
Q ss_pred hhhhHHHHHhhhhhhhh-hhccCC-------CCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE---EEE
Q 017132 191 MKLSRLAKALASDVNVK-RRSKGL-------LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK---WVR 259 (376)
Q Consensus 191 ~~L~~~l~~l~~~~~~~-~~~~~~-------~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~---~~~ 259 (376)
..|+..+.+++.+.... ++..+. .....+|++||+||||||||||+|++.+ ..+++.||||+.+. ..+
T Consensus 29 g~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~Y 107 (365)
T COG1163 29 GLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLEY 107 (365)
T ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEee
Confidence 34555566665554432 111111 1234689999999999999999999865 68999999999853 233
Q ss_pred eCCeEEEEeCCCCcCCC
Q 017132 260 FGKDLEFLDSPGIIPMR 276 (376)
Q Consensus 260 ~~~~i~l~DTpG~i~~~ 276 (376)
-+-+|+++|+||++...
T Consensus 108 ~ga~IQild~Pgii~ga 124 (365)
T COG1163 108 KGAQIQLLDLPGIIEGA 124 (365)
T ss_pred cCceEEEEcCcccccCc
Confidence 37789999999999653
No 48
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.18 E-value=1.9e-11 Score=119.73 Aligned_cols=57 Identities=40% Similarity=0.541 Sum_probs=47.9
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEeC------------------CeEEEEeCCCCcCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG------------------KDLEFLDSPGIIPM 275 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~~------------------~~i~l~DTpG~i~~ 275 (376)
++|+|||+||||||||+|+|++.+ +.+++.||||+++.. +.+. ..+.++||||++..
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 579999999999999999999876 789999999998652 2322 24899999999964
No 49
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.18 E-value=1.5e-11 Score=116.58 Aligned_cols=56 Identities=41% Similarity=0.518 Sum_probs=46.0
Q ss_pred EeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEeCC------------------eEEEEeCCCCcCCC
Q 017132 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK------------------DLEFLDSPGIIPMR 276 (376)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~~~------------------~i~l~DTpG~i~~~ 276 (376)
|+|||+||||||||+|+|++.+ +.+++.||||+++.. +.+.. .+.++||||++...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~-~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a 76 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 76 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCC-CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCC
Confidence 5899999999999999999876 489999999999653 22221 48999999999643
No 50
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.10 E-value=1.4e-10 Score=104.71 Aligned_cols=58 Identities=26% Similarity=0.404 Sum_probs=47.1
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccC-CCCceeEEEEEEe---CCeEEEEeCCCCcCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF---GKDLEFLDSPGIIPMR 276 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-~pg~T~~~~~~~~---~~~i~l~DTpG~i~~~ 276 (376)
+|++||.||||||||+|+|+|++...++. .+++|++.+..+. +..+.++||||+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~ 63 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTS 63 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCcc
Confidence 69999999999999999999987655553 5689998665432 5689999999998654
No 51
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.08 E-value=1.2e-10 Score=109.34 Aligned_cols=62 Identities=26% Similarity=0.527 Sum_probs=52.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcCCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRI 277 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~~~~ 277 (376)
+.+.|+++|.||||||||.|.+.|.+.+.++.++.||+....--+ ..++.++||||++.+..
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~ 135 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKM 135 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccch
Confidence 457899999999999999999999999999999999998544333 34789999999997643
No 52
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.08 E-value=1e-10 Score=114.19 Aligned_cols=57 Identities=35% Similarity=0.443 Sum_probs=48.0
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe--CCeEEEEeCCCCcCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIPM 275 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~--~~~i~l~DTpG~i~~ 275 (376)
..|+|||+||||||||||+|++.+ ..+++.||||++++. +.. +..+.++||||++..
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~g 219 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEG 219 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCC
Confidence 359999999999999999999754 679999999999764 333 346999999999864
No 53
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.06 E-value=1.3e-10 Score=118.29 Aligned_cols=57 Identities=37% Similarity=0.530 Sum_probs=47.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-CCeEEEEeCCCCcCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-~~~i~l~DTpG~i~~ 275 (376)
..|+|||+||||||||||+|++.+ ..+++.||||+++.. +.. +..+.++||||++..
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGlieg 219 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPG 219 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccc
Confidence 469999999999999999999764 678999999999654 333 347899999999854
No 54
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.05 E-value=3.1e-10 Score=114.85 Aligned_cols=59 Identities=39% Similarity=0.505 Sum_probs=50.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEE--e-CCeEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~--~-~~~i~l~DTpG~i~ 274 (376)
..++|+++|.||||||||+|+|++.....+++.||+|++..... + +..+.++||||+..
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~ 263 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIRE 263 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCccc
Confidence 46789999999999999999999877778999999999975433 3 45689999999964
No 55
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.04 E-value=1.5e-10 Score=114.74 Aligned_cols=73 Identities=27% Similarity=0.367 Sum_probs=56.8
Q ss_pred CCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeC---CeEEEEeCCCCcCCCCCcHHHHHHHHH
Q 017132 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG---KDLEFLDSPGIIPMRISDQAAAIKLAI 288 (376)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~---~~i~l~DTpG~i~~~~~~~~~~~kla~ 288 (376)
+...+..+||||||||||++|.++. ..+.+.+.+|||+..-.-+++ ..++++||||++.+..++.....++++
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtr-advevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsI 241 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTR-ADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQII 241 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccc-cccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHH
Confidence 4456799999999999999999995 458899999999997554443 346899999999887766544444443
No 56
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.04 E-value=6.1e-10 Score=100.81 Aligned_cols=84 Identities=25% Similarity=0.268 Sum_probs=56.6
Q ss_pred hhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CC-eEE
Q 017132 190 TMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GK-DLE 265 (376)
Q Consensus 190 i~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~-~i~ 265 (376)
+..+++.++.+.+.+...+..+. .+..++|+++|.+|||||||+|+|++.. ..+.+.+++|.+.....+ +. .+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~I~iiG~~g~GKStLl~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~ 92 (204)
T cd01878 15 IAKLRRELEKVKKQRELQRRRRK-RSGIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLRLPDGREVL 92 (204)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhh-hcCCCeEEEECCCCCCHHHHHHHHhcch-hccCCccceeccceeEEEEecCCceEE
Confidence 44455555555444333222221 2334689999999999999999999764 567778888887654332 33 789
Q ss_pred EEeCCCCcCC
Q 017132 266 FLDSPGIIPM 275 (376)
Q Consensus 266 l~DTpG~i~~ 275 (376)
++||||+...
T Consensus 93 i~Dt~G~~~~ 102 (204)
T cd01878 93 LTDTVGFIRD 102 (204)
T ss_pred EeCCCccccC
Confidence 9999999754
No 57
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.04 E-value=1.1e-10 Score=110.04 Aligned_cols=56 Identities=34% Similarity=0.472 Sum_probs=47.2
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe--CCeEEEEeCCCCcCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIPM 275 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~--~~~i~l~DTpG~i~~ 275 (376)
.|++||+||||||||+|+|+..+ .++++.+|||+.++. +.. ...+.+-|-||+|..
T Consensus 198 dvGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~G 257 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEG 257 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCcccccc
Confidence 58999999999999999999765 599999999999754 222 235899999999975
No 58
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.04 E-value=2e-10 Score=115.27 Aligned_cols=56 Identities=32% Similarity=0.455 Sum_probs=48.0
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe----CCeEEEEeCCCCcCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIPM 275 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~----~~~i~l~DTpG~i~~ 275 (376)
.|+|||+||||||||||+|++.+ ..+++.||||+++....+ +..+.++||||++..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGlieg 219 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEG 219 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCccc
Confidence 69999999999999999999765 678999999999865433 457999999999863
No 59
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.03 E-value=3.7e-10 Score=105.97 Aligned_cols=61 Identities=26% Similarity=0.361 Sum_probs=51.6
Q ss_pred CCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcCC
Q 017132 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (376)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~~ 275 (376)
..+++|+++|.||||||||+|+|++.....+++..++|+..+.... +..+.++|||||...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 3568999999999999999999999887788888888888765443 557899999999865
No 60
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.01 E-value=5.1e-10 Score=99.42 Aligned_cols=59 Identities=31% Similarity=0.524 Sum_probs=50.7
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcc-cccccCCCCceeEEEEEEeCCeEEEEeCCCCcCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~i~~ 275 (376)
.++|+++|.+|||||||+|+|++.. ...+++.+|+|.+......+.++.++||||+...
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~ 77 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYA 77 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccc
Confidence 4679999999999999999999864 4567889999999887776778999999998643
No 61
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.00 E-value=3.2e-09 Score=109.62 Aligned_cols=57 Identities=35% Similarity=0.543 Sum_probs=48.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEE---eCCeEEEEeCCCCcCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR---FGKDLEFLDSPGIIPM 275 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~---~~~~i~l~DTpG~i~~ 275 (376)
.+|+++|.||||||||+|+|+|.+ .+|+|-||+|-+...-. -+..+.++|.||.-.-
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL 63 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSL 63 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCC
Confidence 459999999999999999999865 89999999998865433 3667999999999754
No 62
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.00 E-value=5.2e-10 Score=100.19 Aligned_cols=60 Identities=32% Similarity=0.527 Sum_probs=51.6
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcc-cccccCCCCceeEEEEEEeCCeEEEEeCCCCcCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~i~~ 275 (376)
..++|+++|.+|||||||+|+|++.+ ...+++.+|+|++.+....+.++.++||||+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCc
Confidence 34689999999999999999999864 5678889999999887777778999999998643
No 63
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.97 E-value=4.8e-10 Score=109.37 Aligned_cols=57 Identities=35% Similarity=0.496 Sum_probs=47.6
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEeC--CeEEEEeCCCCcCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIPM 275 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~~--~~i~l~DTpG~i~~ 275 (376)
..|+|||+||||||||||+|++.+ ..+++.||||++++. ++++ ..+.++||||++..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~ 218 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEG 218 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccC
Confidence 359999999999999999999754 679999999998654 3333 57999999999854
No 64
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.96 E-value=4.6e-10 Score=113.32 Aligned_cols=56 Identities=43% Similarity=0.631 Sum_probs=48.2
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
+|++||.||||||||+|+|+++..+.+++.||+|++.+...+ +..+.++||||+..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~ 59 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEE 59 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCC
Confidence 489999999999999999999877789999999999764433 56799999999853
No 65
>PRK15494 era GTPase Era; Provisional
Probab=98.96 E-value=1.1e-09 Score=107.33 Aligned_cols=59 Identities=31% Similarity=0.577 Sum_probs=49.1
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-CCeEEEEeCCCCcCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-~~~i~l~DTpG~i~~ 275 (376)
..+|++||.||||||||+|+|++.+...+++++++|++... +.. +.++.++||||+..+
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~ 113 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEP 113 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCC
Confidence 45799999999999999999999877778999999998543 222 457899999999754
No 66
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.95 E-value=7e-10 Score=110.68 Aligned_cols=57 Identities=30% Similarity=0.373 Sum_probs=46.1
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-------------------------CCeEEEEeCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------------GKDLEFLDSP 270 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-------------------------~~~i~l~DTp 270 (376)
++|+|||+||||||||+|+|++.+ +.+++.||+|+++.. ..+ .-.+.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 579999999999999999999765 678999999998653 110 1246799999
Q ss_pred CCcCC
Q 017132 271 GIIPM 275 (376)
Q Consensus 271 G~i~~ 275 (376)
|++..
T Consensus 81 Gl~~g 85 (396)
T PRK09602 81 GLVPG 85 (396)
T ss_pred CcCCC
Confidence 99864
No 67
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.95 E-value=4.4e-10 Score=107.23 Aligned_cols=57 Identities=35% Similarity=0.473 Sum_probs=48.4
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEe--CCeEEEEeCCCCcCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GKDLEFLDSPGIIPMR 276 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~--~~~i~l~DTpG~i~~~ 276 (376)
-|++||+||||||||||+++.. ..++++.||||+.+. .++. ++.+++-|-||+|..-
T Consensus 161 DVGLVG~PNaGKSTlls~vS~A-kPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGA 221 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAA-KPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGA 221 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhc-CCcccCCccccccCcccEEEecCCCcEEEecCccccccc
Confidence 4899999999999999999965 489999999999964 4554 4569999999999753
No 68
>PRK00089 era GTPase Era; Reviewed
Probab=98.94 E-value=8.7e-10 Score=105.73 Aligned_cols=58 Identities=36% Similarity=0.601 Sum_probs=48.2
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE-EEe--CCeEEEEeCCCCcCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW-VRF--GKDLEFLDSPGIIPMR 276 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~-~~~--~~~i~l~DTpG~i~~~ 276 (376)
.|+++|.||||||||+|+|++.+.+.+++.|.||++... +.. +.++.++||||+..+.
T Consensus 7 ~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 7 FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK 67 (292)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCch
Confidence 599999999999999999999888889999999998532 222 3479999999997543
No 69
>PRK04213 GTP-binding protein; Provisional
Probab=98.94 E-value=8.8e-10 Score=99.47 Aligned_cols=54 Identities=37% Similarity=0.588 Sum_probs=47.1
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeCCeEEEEeCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~ 272 (376)
.++|+++|.+|||||||+|+|++.. ..++..||+|++...+..+ ++.++||||+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~ 62 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDWG-DFILTDLPGF 62 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEeec-ceEEEeCCcc
Confidence 4679999999999999999999865 6788899999987766655 7999999997
No 70
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.92 E-value=2.1e-09 Score=102.97 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=47.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEE---eCCeEEEEeCCCCcCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR---FGKDLEFLDSPGIIPM 275 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~---~~~~i~l~DTpG~i~~ 275 (376)
...+|+++|.|||||||++|+|+++..+.+++..++|...+... -+..+.++||||+...
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 35689999999999999999999988777777777666543322 2668999999999864
No 71
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.89 E-value=1.9e-09 Score=110.25 Aligned_cols=57 Identities=39% Similarity=0.530 Sum_probs=48.8
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i 273 (376)
.++|+|||.||||||||+|+|++.....+++.||+|++...... +..+.++||||+.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~ 97 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWE 97 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcC
Confidence 46799999999999999999998776778999999999755433 5678999999986
No 72
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.89 E-value=1.3e-09 Score=95.14 Aligned_cols=55 Identities=33% Similarity=0.471 Sum_probs=44.4
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEE--Ee-CC-eEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GK-DLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~--~~-~~-~i~l~DTpG~i~ 274 (376)
.|++||.+|||||||+|+|++.. ..++..||+|.+.... .. +. .+.++||||+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~-~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~ 60 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK-PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIE 60 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC-ccccCCCccccCCcceEEEcCCCCeEEEEecCcccC
Confidence 48999999999999999999755 4788889999875432 22 33 789999999864
No 73
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.88 E-value=2.1e-09 Score=93.60 Aligned_cols=55 Identities=40% Similarity=0.609 Sum_probs=45.0
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
+|+++|+||||||||+|+|++.. ..+++.+|+|++...... +..+.++||||+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK-PEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC-CccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 58999999999999999999765 456778999988765433 35789999999864
No 74
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.7e-09 Score=104.93 Aligned_cols=57 Identities=39% Similarity=0.500 Sum_probs=46.4
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-------------------CCeEEEEeCCCCcCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------GKDLEFLDSPGIIPM 275 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-------------------~~~i~l~DTpG~i~~ 275 (376)
+++||||.||||||||+|+||+.. +.++|.||||-++.. +.+ .-.+.++|.+|+++.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 579999999999999999999766 889999999998531 111 113689999999975
No 75
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.84 E-value=2.3e-09 Score=104.00 Aligned_cols=55 Identities=29% Similarity=0.338 Sum_probs=44.5
Q ss_pred EeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-------------------------CCeEEEEeCCCC
Q 017132 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-------------------------GKDLEFLDSPGI 272 (376)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-------------------------~~~i~l~DTpG~ 272 (376)
|++||+||||||||+|+|++.. ..+++.||+|.++.. ... .-.+.++||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5899999999999999999765 689999999988642 111 124789999999
Q ss_pred cCC
Q 017132 273 IPM 275 (376)
Q Consensus 273 i~~ 275 (376)
+..
T Consensus 80 v~g 82 (318)
T cd01899 80 VPG 82 (318)
T ss_pred CCC
Confidence 864
No 76
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.84 E-value=2.6e-09 Score=101.70 Aligned_cols=61 Identities=34% Similarity=0.378 Sum_probs=49.4
Q ss_pred CCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe--------------------CCeEEEEeCCCCc
Q 017132 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--------------------GKDLEFLDSPGII 273 (376)
Q Consensus 214 ~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~--------------------~~~i~l~DTpG~i 273 (376)
.+..++++|||.|||||||++|+|++.. +.+++.||+|.|+..-++ .-.+.++|..|++
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~-a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSK-AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCC-CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 3455789999999999999999999765 569999999999743222 1247899999999
Q ss_pred CC
Q 017132 274 PM 275 (376)
Q Consensus 274 ~~ 275 (376)
+.
T Consensus 96 kG 97 (391)
T KOG1491|consen 96 KG 97 (391)
T ss_pred cC
Confidence 75
No 77
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.84 E-value=3.2e-09 Score=98.71 Aligned_cols=56 Identities=34% Similarity=0.580 Sum_probs=46.1
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-CCeEEEEeCCCCcCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-~~~i~l~DTpG~i~~ 275 (376)
+|+++|+||+|||||+|+|++.. ..+++.||+|.+... +.. +..+.++||||++..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccc
Confidence 58999999999999999999865 568899999987543 222 557899999999754
No 78
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.84 E-value=2.8e-09 Score=107.89 Aligned_cols=57 Identities=44% Similarity=0.638 Sum_probs=49.0
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
++|++||.||||||||+|+|++...+.+++.||+|++.....+ +..+.++||||+..
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~ 61 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEP 61 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCC
Confidence 3699999999999999999998877788999999999754333 56799999999975
No 79
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.82 E-value=3.7e-09 Score=113.30 Aligned_cols=57 Identities=42% Similarity=0.578 Sum_probs=49.4
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
.+|+|||+||||||||+|+|++.+.+.+++.||+|++...... +..+.++||||+..
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~ 335 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 335 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCC
Confidence 5799999999999999999998877789999999999765443 45789999999874
No 80
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.82 E-value=4.8e-09 Score=89.66 Aligned_cols=58 Identities=36% Similarity=0.483 Sum_probs=48.2
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~~ 275 (376)
.+|+++|.+|+|||||+|+|++.....+++.+++|.+...... +..+.++||||+...
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~ 62 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRET 62 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCC
Confidence 4799999999999999999998876678899999998654333 347899999998654
No 81
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.80 E-value=5.3e-09 Score=112.30 Aligned_cols=56 Identities=32% Similarity=0.515 Sum_probs=47.6
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
.+|+++|.||||||||+|+|++.+ ..+++.||+|.+.....+ +.++.++||||+..
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ys 62 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYS 62 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCccc
Confidence 579999999999999999999875 589999999998654333 45789999999964
No 82
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.80 E-value=5.4e-09 Score=90.64 Aligned_cols=59 Identities=39% Similarity=0.550 Sum_probs=48.0
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEE--e-CCeEEEEeCCCCcCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPM 275 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~--~-~~~i~l~DTpG~i~~ 275 (376)
+++|+++|.+|+|||||+|+|++.....+++.+++|++..... . +..+.++||||+...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~ 63 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRK 63 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccc
Confidence 4679999999999999999999876667788999998864322 2 456899999999643
No 83
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.80 E-value=3.8e-09 Score=90.43 Aligned_cols=55 Identities=45% Similarity=0.663 Sum_probs=45.2
Q ss_pred eEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcCC
Q 017132 221 GIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (376)
Q Consensus 221 ~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~~ 275 (376)
+++|.+|||||||+|+|++.....+++.+++|++...... +..+.++||||+...
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPD 58 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCc
Confidence 5899999999999999998766678889999988654333 456899999999753
No 84
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.79 E-value=3.2e-09 Score=91.18 Aligned_cols=52 Identities=42% Similarity=0.663 Sum_probs=42.9
Q ss_pred EeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-CCeEEEEeCCCCcC
Q 017132 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 274 (376)
Q Consensus 222 lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-~~~i~l~DTpG~i~ 274 (376)
|+|++|||||||+|+|++.. ..++..||+|++.+. +.. +.++.++||||+..
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~ 55 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYS 55 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccc
Confidence 58999999999999999865 678889999998653 333 45789999999964
No 85
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.73 E-value=1.7e-08 Score=86.64 Aligned_cols=59 Identities=36% Similarity=0.565 Sum_probs=46.6
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~~ 275 (376)
..+|+++|.||+|||||+|+|++...+..++.+.+|+....... +..+.++||||+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~ 64 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKP 64 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcc
Confidence 35799999999999999999998876667778888877543222 246889999998754
No 86
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.73 E-value=2.5e-08 Score=103.22 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=48.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCC-CCceeEEEEEE--eCCeEEEEeCCCCcCCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPR-PGVTRVLKWVR--FGKDLEFLDSPGIIPMRI 277 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~-pg~T~~~~~~~--~~~~i~l~DTpG~i~~~~ 277 (376)
...+|++||.|||||||++|+|++++.+.++.. ++||+...... .+..+.++|||||.....
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~ 181 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSAS 181 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCcccc
Confidence 357899999999999999999999877777765 66666433322 256799999999997643
No 87
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.73 E-value=6.7e-09 Score=90.85 Aligned_cols=52 Identities=38% Similarity=0.569 Sum_probs=42.4
Q ss_pred EeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe--CCeEEEEeCCCCcC
Q 017132 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF--GKDLEFLDSPGIIP 274 (376)
Q Consensus 222 lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~--~~~i~l~DTpG~i~ 274 (376)
++|.+|||||||+|+|++... .+++.+++|.+... ... +..+.++||||+..
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~ 56 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIE 56 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccch
Confidence 589999999999999998764 67889999988643 222 56789999999964
No 88
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.72 E-value=1.6e-08 Score=87.13 Aligned_cols=56 Identities=30% Similarity=0.549 Sum_probs=47.8
Q ss_pred EeEeecCCCCcchhhhhhhh-cccccccCCCCceeEEEEEEeCCeEEEEeCCCCcCC
Q 017132 220 AGIVGYPNVGKSSLINRLLK-RRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (376)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~-~~~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~i~~ 275 (376)
|+++|.+|||||||+|+|++ ......+..+|+|.....+..+..+.++||||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCcccc
Confidence 79999999999999999993 334567888999999888887779999999998643
No 89
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.69 E-value=1.8e-08 Score=98.95 Aligned_cols=58 Identities=34% Similarity=0.366 Sum_probs=47.3
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-C-----------------CeEEEEeCCCCcCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-G-----------------KDLEFLDSPGIIPM 275 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-~-----------------~~i~l~DTpG~i~~ 275 (376)
++++|||+||||||||+|+|++.+...+++.||||.++.. +.. + ..+.++|.||++..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 5799999999999999999998764388999999998643 332 1 24789999999964
No 90
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.68 E-value=2.4e-08 Score=86.10 Aligned_cols=54 Identities=33% Similarity=0.529 Sum_probs=40.2
Q ss_pred EEeEeecCCCCcchhhhhhhhccc--ccccCCCCceeEEEEE--Ee--CCeEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLKWV--RF--GKDLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~--~~v~~~pg~T~~~~~~--~~--~~~i~l~DTpG~ 272 (376)
.|+++|.+|||||||+|+|++... ......+++|.+.... .+ +..+.++||||.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~ 61 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGH 61 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCCh
Confidence 589999999999999999997432 2223457888775432 22 457889999996
No 91
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.62 E-value=2.1e-08 Score=91.44 Aligned_cols=55 Identities=29% Similarity=0.347 Sum_probs=41.4
Q ss_pred EEeEeecCCCCcchhhhhhhhccccccc------------------------------CCCCceeEEEEEEe---CCeEE
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAA------------------------------PRPGVTRVLKWVRF---GKDLE 265 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~------------------------------~~pg~T~~~~~~~~---~~~i~ 265 (376)
+|++||.+|+|||||+|+|+....+.++ ...|+|++.....+ +..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 4899999999999999999764333221 13788998654443 55799
Q ss_pred EEeCCCCc
Q 017132 266 FLDSPGII 273 (376)
Q Consensus 266 l~DTpG~i 273 (376)
|+||||+.
T Consensus 81 liDTpG~~ 88 (208)
T cd04166 81 IADTPGHE 88 (208)
T ss_pred EEECCcHH
Confidence 99999974
No 92
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.60 E-value=4.7e-08 Score=89.53 Aligned_cols=62 Identities=27% Similarity=0.388 Sum_probs=41.0
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccC-CCCceeEEEEEEe---CCeEEEEeCCCCcCCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISD 279 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-~pg~T~~~~~~~~---~~~i~l~DTpG~i~~~~~~ 279 (376)
++|.++|.|++||||++|.|+|+....++. ...+|...+.... +..+.++|||||......+
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~ 66 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSD 66 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccH
Confidence 368999999999999999999987655542 3346666544332 6789999999998665443
No 93
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.59 E-value=5.7e-08 Score=84.35 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=41.5
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe------CCeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF------GKDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~------~~~i~l~DTpG~i 273 (376)
.|+++|.+|||||||+|+|++.. ......+++|.+.....+ +..+.++||||..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcc-cccccCCCeEEeeccEEEecccCCcceEEEEeCCCcH
Confidence 48999999999999999999654 445566788887543222 3468999999973
No 94
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.59 E-value=8.8e-08 Score=88.55 Aligned_cols=61 Identities=20% Similarity=0.182 Sum_probs=45.7
Q ss_pred eEEeEeecCCCCcchhhhhhhhcc-ccccc-CCCCceeEEEEEE--e----CCeEEEEeCCCCcCCCCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRR-MCPAA-PRPGVTRVLKWVR--F----GKDLEFLDSPGIIPMRIS 278 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~-~~pg~T~~~~~~~--~----~~~i~l~DTpG~i~~~~~ 278 (376)
..|+++|.+|+|||||+|.|++.. ...++ ....+|+.+.... . +..++++||||+......
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~ 76 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERG 76 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccC
Confidence 458999999999999999999872 34444 4578888864322 1 357999999999865443
No 95
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.58 E-value=8.2e-08 Score=81.13 Aligned_cols=55 Identities=38% Similarity=0.562 Sum_probs=44.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEeC---CeEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG---KDLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~~---~~i~l~DTpG~i 273 (376)
++|+++|++|+|||||+|+|.+.. ...+..+++|++... +..+ ..+.++||||..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 579999999999999999999876 777888999998654 3333 357889999954
No 96
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.54 E-value=4.9e-07 Score=80.97 Aligned_cols=98 Identities=26% Similarity=0.196 Sum_probs=69.6
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHh---HHHHHHHH-HHhC
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD---RNAWATYF-AKQG 176 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~---~~~w~~~~-~~~g 176 (376)
.|||. ++.+++...+..+|+++.|+|+..+......+....+ .+.|+++|+||+|+...+. .+++.+.+ +..+
T Consensus 77 tPG~~-~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 77 TPGHE-DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp ESSSH-HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccc-ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 48874 5777788889999999999999987655444443333 3788999999999994332 22333233 2222
Q ss_pred ------ceEEEeeCcCCcchhhhhHHHHHhh
Q 017132 177 ------TKVIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 177 ------~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
.+++++|+.+|.|+..|.+.+.++.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 3699999999999999988876553
No 97
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.52 E-value=1.1e-07 Score=82.03 Aligned_cols=53 Identities=19% Similarity=0.273 Sum_probs=40.8
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEE--eCC---eEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--FGK---DLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~--~~~---~i~l~DTpG~ 272 (376)
+|+++|++|||||||+|+|++.+ ...+..|++|.+..... .+. .+.+.||||-
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDT-FDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCccCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence 68999999999999999999765 44567788887754332 222 4789999995
No 98
>PRK09866 hypothetical protein; Provisional
Probab=98.51 E-value=1.5e-07 Score=97.36 Aligned_cols=77 Identities=19% Similarity=0.249 Sum_probs=57.3
Q ss_pred hhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe----CCeEEE
Q 017132 191 MKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEF 266 (376)
Q Consensus 191 ~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~----~~~i~l 266 (376)
+.+++.++.+.......++. .+.+++||++|+|||||+|+|+|.....+++.+++|. +++++. ....+.
T Consensus 49 R~i~~ri~~L~~~L~Kv~~~------~~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l-pT~i~~~pg~re~~L~ 121 (741)
T PRK09866 49 PNIAERHAMLNNELRKISRL------EMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL-PTLIRHTPGQKEPVLH 121 (741)
T ss_pred HHHHHHHHHHHHHHHHHhcc------ceEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc-cEEEEecCCcCceeee
Confidence 34555555555444333222 2679999999999999999999988888889999999 555554 234678
Q ss_pred EeCCCCcC
Q 017132 267 LDSPGIIP 274 (376)
Q Consensus 267 ~DTpG~i~ 274 (376)
.||+|||.
T Consensus 122 ~dtvgfI~ 129 (741)
T PRK09866 122 FSHVAPID 129 (741)
T ss_pred cCCccchH
Confidence 99999997
No 99
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.49 E-value=1.1e-06 Score=76.66 Aligned_cols=94 Identities=18% Similarity=0.147 Sum_probs=69.3
Q ss_pred HHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhC--ceEEEeeCcC
Q 017132 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG--TKVIFSNGQL 186 (376)
Q Consensus 109 ~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g--~~vi~iSa~~ 186 (376)
...+.+...++.+|+++.|+|+..+.+.....+......+|.++++||+|+.... ...+.+.+.+.+ .+++++|+++
T Consensus 53 ~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~ 131 (158)
T PRK15467 53 RWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHD 131 (158)
T ss_pred HHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhccCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCC
Confidence 3455555668999999999999887665555555544568999999999996532 334445555555 3789999999
Q ss_pred CcchhhhhHHHHHhhhh
Q 017132 187 GMGTMKLSRLAKALASD 203 (376)
Q Consensus 187 g~gi~~L~~~l~~l~~~ 203 (376)
|.|+.+|.+.+.++...
T Consensus 132 g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 132 PQSVQQLVDYLASLTKQ 148 (158)
T ss_pred ccCHHHHHHHHHHhchh
Confidence 99999998887766543
No 100
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.44 E-value=1.4e-06 Score=80.59 Aligned_cols=97 Identities=14% Similarity=0.014 Sum_probs=68.6
Q ss_pred ChhHHHHHHHHHHHHh--hhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHH----HHHHHHH
Q 017132 103 YPGHIAKTEKELKDQL--KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNA----WATYFAK 174 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vi--dr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~----w~~~~~~ 174 (376)
.||| ++..+.+..-+ ..+|+++.|+|++.+......++..++. ++|.++|+||+|++++..... +.+.+..
T Consensus 91 tpG~-~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~ 169 (224)
T cd04165 91 LAGH-ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDLKRILKV 169 (224)
T ss_pred CCCc-HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHHHHHhcC
Confidence 4888 45555555445 3799999999999877655555555443 789999999999987754433 2223321
Q ss_pred h--------------------------CceEEEeeCcCCcchhhhhHHHHHh
Q 017132 175 Q--------------------------GTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 175 ~--------------------------g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
. ..+++.+|+.+|.|++.|.+.|..|
T Consensus 170 ~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 170 PGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred CCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 1 1267889999999999999888765
No 101
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.44 E-value=1.3e-06 Score=75.12 Aligned_cols=95 Identities=19% Similarity=0.242 Sum_probs=63.0
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-H--HHHhcCCCeEEEEEccCCCCHHh----HHHHHHHHHH--
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-M--DQWLGNRKRILVLNREDMISMAD----RNAWATYFAK-- 174 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~-l--~~~l~~kp~ilVlNK~DL~~~~~----~~~w~~~~~~-- 174 (376)
||+ .+..+.+...+..+|+++.|+|++........+ + .+....+|.++|+||+|+.+... ...+.+.+..
T Consensus 59 pG~-~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 137 (164)
T cd04171 59 PGH-EKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF 137 (164)
T ss_pred CCh-HHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC
Confidence 554 344455556688999999999998643222222 1 11223358999999999987532 2334444544
Q ss_pred -hCceEEEeeCcCCcchhhhhHHHHH
Q 017132 175 -QGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 175 -~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
.+..++++|+++|.|++++.+.+.+
T Consensus 138 ~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 138 LADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 2467899999999999988776653
No 102
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.44 E-value=3.3e-06 Score=72.20 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCC-CHHhHHHHHHHHHHhC-ceEEEeeCc
Q 017132 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMI-SMADRNAWATYFAKQG-TKVIFSNGQ 185 (376)
Q Consensus 108 ~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~-~~~~~~~w~~~~~~~g-~~vi~iSa~ 185 (376)
..+.+.+-.....+|+|+.+.|+..+.....+.+.... ++|+|=|+||+|+. +.+..+.-.++++..| .+++.+|+.
T Consensus 51 ~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~ 129 (143)
T PF10662_consen 51 PRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAV 129 (143)
T ss_pred HHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECC
Confidence 45566666777899999999999999998999888776 58999999999999 4445555556677777 467889999
Q ss_pred CCcchhhhhHHHHH
Q 017132 186 LGMGTMKLSRLAKA 199 (376)
Q Consensus 186 ~g~gi~~L~~~l~~ 199 (376)
+|.|+.+|++.|++
T Consensus 130 ~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 130 TGEGIEELKDYLEE 143 (143)
T ss_pred CCcCHHHHHHHHhC
Confidence 99999999888753
No 103
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.42 E-value=3.3e-07 Score=96.17 Aligned_cols=51 Identities=43% Similarity=0.642 Sum_probs=42.6
Q ss_pred ecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcCC
Q 017132 224 GYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (376)
Q Consensus 224 G~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~~ 275 (376)
|.||||||||+|+|++.+ ..+++.||+|.+.....+ +.++.++||||....
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~ 54 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSL 54 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCcccc
Confidence 899999999999999865 689999999999754332 457899999999753
No 104
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.39 E-value=2.9e-07 Score=83.22 Aligned_cols=58 Identities=24% Similarity=0.174 Sum_probs=39.1
Q ss_pred eEEeEeecCCCCcchhhhhhhhccccc-ccC---CCCceeEEEEEEe--CCeEEEEeCCCCcCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAP---RPGVTRVLKWVRF--GKDLEFLDSPGIIPM 275 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~---~pg~T~~~~~~~~--~~~i~l~DTpG~i~~ 275 (376)
++|+++|.+|||||||+|+|++..... ... ...+|.....+.. ..++.++||||+-..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~ 65 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGST 65 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcc
Confidence 579999999999999999999843221 111 1124444333332 247899999999653
No 105
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.38 E-value=2.8e-07 Score=81.32 Aligned_cols=55 Identities=29% Similarity=0.416 Sum_probs=39.9
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccc---------------cCCCCceeEEEEEEe---CCeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPA---------------APRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v---------------~~~pg~T~~~~~~~~---~~~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|+|++...... ....|+|.+.....+ +..+.++||||..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~ 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH
Confidence 389999999999999999987643321 223567766544333 3468999999975
No 106
>COG1159 Era GTPase [General function prediction only]
Probab=98.38 E-value=5.5e-06 Score=78.33 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=84.5
Q ss_pred CCcEEEEcCCCCCcccChhHH--HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCH
Q 017132 87 DADLYYWTKSLRPVQWYPGHI--AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISM 162 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~--~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~ 162 (376)
+...|..| +|.=..|.|. +.+.+...+.+..+|+||+|+|+..+.+..+..+...+. +.|+++++||+|.+++
T Consensus 53 ~~QiIfvD---TPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~ 129 (298)
T COG1159 53 NAQIIFVD---TPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKP 129 (298)
T ss_pred CceEEEEe---CCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCc
Confidence 44445555 5555556442 234455567789999999999999988888777666665 4699999999999987
Q ss_pred Hh-HHHHHHHHHHhC--ceEEEeeCcCCcchhhhhHHHHHhhhh
Q 017132 163 AD-RNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKALASD 203 (376)
Q Consensus 163 ~~-~~~w~~~~~~~g--~~vi~iSa~~g~gi~~L~~~l~~l~~~ 203 (376)
.. +....+++.... ..++++||.+|.++..|.+.+++..++
T Consensus 130 ~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 130 KTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 76 455555555443 578999999999999999888876654
No 107
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.36 E-value=3.6e-07 Score=90.18 Aligned_cols=60 Identities=22% Similarity=0.381 Sum_probs=47.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhhc----ccc-----------cccCCCC---ceeEEEEE-------EeC----CeEEE
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKR----RMC-----------PAAPRPG---VTRVLKWV-------RFG----KDLEF 266 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~----~~~-----------~v~~~pg---~T~~~~~~-------~~~----~~i~l 266 (376)
..+.+++||..|+|||||||++++. +.. .+++.+| +|.++..+ ... -.+.|
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4578999999999999999999986 444 5788899 88886552 223 57899
Q ss_pred EeCCCCcCC
Q 017132 267 LDSPGIIPM 275 (376)
Q Consensus 267 ~DTpG~i~~ 275 (376)
+|||||...
T Consensus 96 IDcvG~~v~ 104 (492)
T TIGR02836 96 VDCVGYTVK 104 (492)
T ss_pred EECCCcccC
Confidence 999999753
No 108
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.36 E-value=3.3e-07 Score=82.28 Aligned_cols=55 Identities=25% Similarity=0.427 Sum_probs=40.7
Q ss_pred EEeEeecCCCCcchhhhhhhhc------ccccccCCCCceeEEEEE--Ee---------------CCeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR------RMCPAAPRPGVTRVLKWV--RF---------------GKDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~------~~~~v~~~pg~T~~~~~~--~~---------------~~~i~l~DTpG~i 273 (376)
+|+++|.+|+|||||+|+|++. .....+..+|+|.+.... .+ +..+.++||||..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 6999999999999999999963 122345567888885432 11 3468999999973
No 109
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.35 E-value=4.8e-07 Score=76.86 Aligned_cols=55 Identities=24% Similarity=0.340 Sum_probs=38.0
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccc-cCCCCceeEEEEEEeC---CeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pg~T~~~~~~~~~---~~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|+|.+...... ....+.+.....+... ..+.++||||..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQE 60 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChH
Confidence 699999999999999999997653322 2333444444444432 357899999974
No 110
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.35 E-value=7.7e-07 Score=76.80 Aligned_cols=55 Identities=27% Similarity=0.315 Sum_probs=39.6
Q ss_pred EEeEeecCCCCcchhhhhhhhcccc-cccCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|+|++.... ...+.++.+.....+..+. .+.++||||.-
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence 6999999999999999999975432 2445556555544444432 47899999963
No 111
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.35 E-value=3.3e-07 Score=85.50 Aligned_cols=64 Identities=28% Similarity=0.382 Sum_probs=45.3
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcCCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRISD 279 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~~~~~~ 279 (376)
.+++|.++|.|+||||||||+|.......++..+-+|...+..+. ++.+.|.||||+=...-.|
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D 104 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKD 104 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhh
Confidence 468899999999999999999996554455544433333222111 5789999999997655555
No 112
>PLN03118 Rab family protein; Provisional
Probab=98.34 E-value=7.6e-07 Score=81.15 Aligned_cols=57 Identities=28% Similarity=0.401 Sum_probs=41.5
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
.++|++||.+|||||||+|+|++.......+..|.+.....+.++. .+.|.||||..
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 73 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCch
Confidence 4789999999999999999999765434444455544444444432 47899999974
No 113
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.34 E-value=6.5e-07 Score=77.33 Aligned_cols=55 Identities=25% Similarity=0.395 Sum_probs=39.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhccccc-ccCCCCceeEEEEEEeC---CeEEEEeCCCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFG---KDLEFLDSPGI 272 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pg~T~~~~~~~~~---~~i~l~DTpG~ 272 (376)
.+|+++|.+|||||||+|+|++.+... ..+..|.+.....+.++ -.+.++||||-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~ 60 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch
Confidence 479999999999999999999765333 34555654444444443 25678999995
No 114
>COG2262 HflX GTPases [General function prediction only]
Probab=98.33 E-value=3.2e-06 Score=82.97 Aligned_cols=110 Identities=21% Similarity=0.213 Sum_probs=81.0
Q ss_pred EEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh-----cCCCeEEEEEccCCCCHH
Q 017132 90 LYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-----GNRKRILVLNREDMISMA 163 (376)
Q Consensus 90 ~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~-l~~~l-----~~kp~ilVlNK~DL~~~~ 163 (376)
-++.+|-..-++-.|.++..+.+...+.+..+|++|.|+|+.+|....+.+ ....+ ..+|.|+|+||+|++...
T Consensus 241 ~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~ 320 (411)
T COG2262 241 KVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDE 320 (411)
T ss_pred eEEEecCccCcccCChHHHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCch
Confidence 456667777788888888899999999999999999999999984333322 11222 268999999999998766
Q ss_pred hHHHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHHhhh
Q 017132 164 DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (376)
Q Consensus 164 ~~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (376)
.... .+.......+++|+++|.|++.|++.+.+...
T Consensus 321 ~~~~---~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 321 EILA---ELERGSPNPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred hhhh---hhhhcCCCeEEEEeccCcCHHHHHHHHHHHhh
Confidence 5211 12222236899999999999999888776544
No 115
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.33 E-value=6.5e-07 Score=77.67 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=39.0
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
.+|+++|.||||||||+|+|.+.+ ......|.++.+.. .+..+. .+.+.||||..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 63 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNE-FNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 579999999999999999999754 33344455554433 333332 46799999974
No 116
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.32 E-value=5.2e-07 Score=76.16 Aligned_cols=55 Identities=33% Similarity=0.448 Sum_probs=44.6
Q ss_pred EeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe----CCeEEEEeCCCCcCCC
Q 017132 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIPMR 276 (376)
Q Consensus 222 lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~----~~~i~l~DTpG~i~~~ 276 (376)
++|.+|+|||||+|+|++......++.+++|.+...... ...+.++||||+....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~ 59 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAG 59 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccc
Confidence 589999999999999998766667888898888654443 4579999999997643
No 117
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.32 E-value=4.8e-06 Score=79.09 Aligned_cols=92 Identities=15% Similarity=0.065 Sum_probs=65.4
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHhHHHHHHHHHHh-C-ceEEEeeCcC
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQ-G-TKVIFSNGQL 186 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~-g-~~vi~iSa~~ 186 (376)
.+.....++.+|+++.|+|+..+.... ..+...+ .++|.++|+||+|+.++.....+...+... + ..++++||++
T Consensus 70 ~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~ 148 (270)
T TIGR00436 70 MKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALT 148 (270)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCC
Confidence 344556789999999999998765432 3333333 368999999999998765544333333322 2 3789999999
Q ss_pred CcchhhhhHHHHHhhhh
Q 017132 187 GMGTMKLSRLAKALASD 203 (376)
Q Consensus 187 g~gi~~L~~~l~~l~~~ 203 (376)
|.|+++|.+.+.+..+.
T Consensus 149 g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 149 GDNTSFLAAFIEVHLPE 165 (270)
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 99999998888766543
No 118
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.31 E-value=7e-06 Score=69.98 Aligned_cols=85 Identities=25% Similarity=0.282 Sum_probs=64.7
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHHHhCc-eEEEeeCcCC
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQLG 187 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~-~vi~iSa~~g 187 (376)
.+.....+..+|+++.|+|++.+....+.++.+++. +.|+++|+||+|+.+.... ...+.+.+. .++++|+++|
T Consensus 67 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~ 143 (157)
T cd01894 67 REQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHG 143 (157)
T ss_pred HHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccC
Confidence 344456688999999999999887777766666654 6899999999999886554 223334454 7889999999
Q ss_pred cchhhhhHHHH
Q 017132 188 MGTMKLSRLAK 198 (376)
Q Consensus 188 ~gi~~L~~~l~ 198 (376)
.|+.++.+.+.
T Consensus 144 ~gv~~l~~~l~ 154 (157)
T cd01894 144 RGIGDLLDAIL 154 (157)
T ss_pred CCHHHHHHHHH
Confidence 99988876654
No 119
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.31 E-value=1.1e-06 Score=76.82 Aligned_cols=55 Identities=25% Similarity=0.383 Sum_probs=37.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccc-cCCCCceeEEEEEEeCC---eEEEEeCCCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGI 272 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pg~T~~~~~~~~~~---~i~l~DTpG~ 272 (376)
.+|++||.||||||||+|++++...... ....|.+.....+..+. .+.+.||||-
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 63 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 63 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 5899999999999999999997543222 12234444333344432 5789999994
No 120
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.31 E-value=6.5e-06 Score=69.65 Aligned_cols=84 Identities=15% Similarity=0.067 Sum_probs=58.9
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHh-HHHHHHHHHHhCc-eEEEeeCcCCcch
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD-RNAWATYFAKQGT-KVIFSNGQLGMGT 190 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~-~~~w~~~~~~~g~-~vi~iSa~~g~gi 190 (376)
.+...+..+|+++.|+|+.++.+.....+.... .+|.++|+||+|+.+... .+.-.++.+..+. +++.+|+++|.|+
T Consensus 55 ~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 133 (142)
T TIGR02528 55 ALIVTAADADVIALVQSATDPESRFPPGFASIF-VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGL 133 (142)
T ss_pred HHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc-cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCH
Confidence 333458999999999999988876665554443 469999999999975322 1122233344454 6888999999999
Q ss_pred hhhhHHH
Q 017132 191 MKLSRLA 197 (376)
Q Consensus 191 ~~L~~~l 197 (376)
+++.+.+
T Consensus 134 ~~l~~~l 140 (142)
T TIGR02528 134 EALVDYL 140 (142)
T ss_pred HHHHHHH
Confidence 8876554
No 121
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.30 E-value=9.2e-07 Score=77.72 Aligned_cols=55 Identities=25% Similarity=0.436 Sum_probs=38.4
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
..+|+++|.+|||||||+|+|.+.......+..|.+.. .+.. +..+.++||||.-
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~l~l~D~~G~~ 69 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIK--TLEYEGYKLNIWDVGGQK 69 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEECCEEEEEEECCCCH
Confidence 46799999999999999999997643333444443222 2222 3467899999963
No 122
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.30 E-value=4e-07 Score=79.43 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=32.8
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeCCeEEEEeCCCCcCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~i~~ 275 (376)
+|+++|.||||||||+|+|.+.... ...|....+ ... -++||||+...
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-----~~~~~~v~~---~~~-~~iDtpG~~~~ 50 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-----ARKTQAVEF---NDK-GDIDTPGEYFS 50 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-----CccceEEEE---CCC-CcccCCccccC
Confidence 5999999999999999999975421 123333322 111 26999998644
No 123
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.27 E-value=1.2e-06 Score=76.67 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=39.5
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeCCeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~i 273 (376)
..+|+++|.+|||||||+|+|.+.......+..|.+...... .+..+.++||||..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~-~~~~~~~~D~~G~~ 69 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQS-DGFKLNVWDIGGQR 69 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEE-CCEEEEEEECCCCH
Confidence 578999999999999999999986433344444544332111 15578899999963
No 124
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.27 E-value=7.4e-07 Score=77.41 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=36.7
Q ss_pred EEeEeecCCCCcchhhhhhhhcccc---cccCCCCceeEEE--EEEe-CCeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~---~v~~~pg~T~~~~--~~~~-~~~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|+|++.... ........|.... .+.. +..+.++||||.-
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 61 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE 61 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCCh
Confidence 4899999999999999999864321 1122334444432 2333 4568999999974
No 125
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.27 E-value=6.7e-06 Score=74.64 Aligned_cols=96 Identities=17% Similarity=0.174 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCC-CCC-cHHHHHHh--cCCCeEEEEEccCCCCHHhHHH----HHHHHHH-
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STT-HPLMDQWL--GNRKRILVLNREDMISMADRNA----WATYFAK- 174 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~-~~~-~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~----w~~~~~~- 174 (376)
||| ..+.+.+...+..+|+++.|+|+..+. ... ...+..+. ..+|.++|+||+|+.+...... ..+.+..
T Consensus 91 PG~-~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~ 169 (203)
T cd01888 91 PGH-EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGT 169 (203)
T ss_pred CCh-HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHHHhcc
Confidence 666 446666677788899999999998752 111 22232222 2347899999999987543322 2222222
Q ss_pred --hCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 175 --QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 175 --~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
.+..++++|+++|.|+.+|.+.+.+.
T Consensus 170 ~~~~~~i~~vSA~~g~gi~~L~~~l~~~ 197 (203)
T cd01888 170 IAENAPIIPISAQLKYNIDVLLEYIVKK 197 (203)
T ss_pred ccCCCcEEEEeCCCCCCHHHHHHHHHHh
Confidence 24568999999999999988777643
No 126
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.26 E-value=8.6e-07 Score=89.64 Aligned_cols=57 Identities=28% Similarity=0.391 Sum_probs=43.7
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccc------------------------------cCCCCceeEEEEEEe---CC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GK 262 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v------------------------------~~~pg~T~~~~~~~~---~~ 262 (376)
..++|+++|.+|+|||||+|+|+....... +..+|+|+|.....+ +.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 347899999999999999999985332211 126899999876555 45
Q ss_pred eEEEEeCCCC
Q 017132 263 DLEFLDSPGI 272 (376)
Q Consensus 263 ~i~l~DTpG~ 272 (376)
.+.++||||.
T Consensus 85 ~i~liDtpG~ 94 (425)
T PRK12317 85 YFTIVDCPGH 94 (425)
T ss_pred EEEEEECCCc
Confidence 7899999996
No 127
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=98.25 E-value=1.2e-06 Score=88.12 Aligned_cols=131 Identities=24% Similarity=0.335 Sum_probs=83.8
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHh---C-------c-----
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ---G-------T----- 177 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~---g-------~----- 177 (376)
+..+..++.-++..++|..+...+..+.+...+..+..+++.||+|+.+..........+... + .
T Consensus 103 ~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~ 182 (572)
T KOG1249|consen 103 EKSEKQENPALARKVVDLSDEPCSIDPLLTNDVGSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPD 182 (572)
T ss_pred hhhhhhhcccceEEeeecccCccccccchhhcccCCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcc
Confidence 333455665677778887776667777777777777789999999999876522222222111 0 0
Q ss_pred ----eEEEeeCcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccc----------
Q 017132 178 ----KVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC---------- 243 (376)
Q Consensus 178 ----~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~---------- 243 (376)
.+..++++.|.|+.+|...+...-. -+| -+.++|.+||||||++|+|+.++.+
T Consensus 183 ~~f~~~~~~r~ktgyg~eeLI~~lvd~~d-------f~G------df~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~ 249 (572)
T KOG1249|consen 183 FDFDHVDLIRAKTGYGIEELIVMLVDIVD-------FRG------DFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDR 249 (572)
T ss_pred cchhhhhhhhhhhcccHHHHHHHhhheee-------ccC------ceeeeeecccchhhHHHHHhhhccccccccceeee
Confidence 1223455667776666444332211 122 2789999999999999999976543
Q ss_pred -cccCCCCceeEEE
Q 017132 244 -PAAPRPGVTRVLK 256 (376)
Q Consensus 244 -~v~~~pg~T~~~~ 256 (376)
.+++-||||....
T Consensus 250 aT~~dwpgTtlsll 263 (572)
T KOG1249|consen 250 ATISDWPGTTLSLL 263 (572)
T ss_pred eecccCCccccchh
Confidence 3567788888753
No 128
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.24 E-value=1.5e-06 Score=82.88 Aligned_cols=59 Identities=22% Similarity=0.310 Sum_probs=39.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccC--------CCCce-eEEEEEEe--C---CeEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP--------RPGVT-RVLKWVRF--G---KDLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~--------~pg~T-~~~~~~~~--~---~~i~l~DTpG~i~ 274 (376)
...+|++||-+|+|||||+|+|.+........ ...++ .......+ + -.+.++|||||-.
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd 75 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGD 75 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccc
Confidence 35689999999999999999999866443322 22222 22222222 2 2588999999954
No 129
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.24 E-value=1.1e-06 Score=78.94 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=38.8
Q ss_pred EEeEeecCCCCcchhhhhhhhccccccc---------------CCCCceeEEEEEEe---CCeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAA---------------PRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~---------------~~pg~T~~~~~~~~---~~~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|+|++....... ...|+|.+.....+ +..+.++||||.-
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~ 76 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA 76 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH
Confidence 6999999999999999999863211111 23566766543333 4468899999985
No 130
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.24 E-value=1.3e-06 Score=79.07 Aligned_cols=56 Identities=25% Similarity=0.418 Sum_probs=41.7
Q ss_pred eEEeEeecCCCCcchhhhhhhhcc------cc---------cccCCCCceeEEEEEEe---CCeEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRR------MC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~------~~---------~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i 273 (376)
++|+++|.+|+|||||+|+|++.. .. ..+...|+|.+.....+ +..+.++||||..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 76 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 76 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH
Confidence 579999999999999999998531 00 11125788888755544 4578999999984
No 131
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.23 E-value=1.5e-06 Score=76.65 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=38.9
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
.+|+++|++|||||||+|+|++.+.....+..|.+.. .+.. +..+.++||||.-
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~D~~G~~ 70 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYKNIRFLMWDIGGQE 70 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEECCeEEEEEECCCCH
Confidence 5799999999999999999986554444444444432 2233 4478999999974
No 132
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.23 E-value=1.1e-05 Score=72.39 Aligned_cols=106 Identities=21% Similarity=0.255 Sum_probs=69.7
Q ss_pred cCCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHH--HHhcCCCeEEEEEccCCCCHH
Q 017132 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD--QWLGNRKRILVLNREDMISMA 163 (376)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~--~~l~~kp~ilVlNK~DL~~~~ 163 (376)
.+..+.+|| .||| ..+.+.+...++.+|.++.|+|++.+......+.. ....+.|.++|+||+|+....
T Consensus 66 ~~~~~~i~D--------tpG~-~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~ 136 (192)
T cd01889 66 ENLQITLVD--------CPGH-ASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEE 136 (192)
T ss_pred cCceEEEEE--------CCCc-HHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHH
Confidence 345667777 2565 34556666667889999999999875433222111 112367999999999998654
Q ss_pred h----HHHHHHHHHH-------hCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 164 D----RNAWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 164 ~----~~~w~~~~~~-------~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
. .+.+.+.+.. .+..++++|+++|.|+.+|.+.+...
T Consensus 137 ~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 137 ERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence 3 2233332221 23578999999999999988776543
No 133
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.22 E-value=1.4e-06 Score=75.04 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=37.1
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeC--CeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~--~~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|++.+.......+..|.+. ..+..+ ..+.+.||||.-
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~l~i~D~~G~~ 55 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNV--EMLQLEKHLSLTVWDVGGQE 55 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcce--EEEEeCCceEEEEEECCCCH
Confidence 48999999999999999999766443333334332 223332 368899999974
No 134
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.22 E-value=1e-06 Score=77.48 Aligned_cols=56 Identities=29% Similarity=0.369 Sum_probs=37.7
Q ss_pred EEeEeecCCCCcchhhhhhhhccccc--------------ccCCCCceeEEEEEEe--------CCeEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCP--------------AAPRPGVTRVLKWVRF--------GKDLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~--------------v~~~pg~T~~~~~~~~--------~~~i~l~DTpG~i~ 274 (376)
+|++||.+|||||||+|+|++...+. +....|+|.+.+...+ +..+.++||||...
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 48999999999999999998743211 1123466665433222 22467999999864
No 135
>CHL00071 tufA elongation factor Tu
Probab=98.22 E-value=1.6e-06 Score=87.30 Aligned_cols=57 Identities=23% Similarity=0.395 Sum_probs=42.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccc---------------cccCCCCceeEEEEEEe---CCeEEEEeCCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~---------------~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~ 272 (376)
..++|+++|.+|+|||||+|+|++.... ..+-..|+|.+...... +..+.++||||.
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh 85 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCCh
Confidence 3578999999999999999999964211 11223899998654444 456899999994
No 136
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.21 E-value=1.5e-06 Score=74.97 Aligned_cols=54 Identities=20% Similarity=0.167 Sum_probs=38.0
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
++|+++|.+|||||||+|++.+.. .+...+.++.+.. ...++. .+.++||||..
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 61 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY--FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQE 61 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceEEEEEEECCEEEEEEEEECCCCc
Confidence 579999999999999999998653 3445555554422 222332 46789999964
No 137
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.21 E-value=1.2e-06 Score=75.45 Aligned_cols=53 Identities=23% Similarity=0.208 Sum_probs=37.0
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEeC---CeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG---KDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~~---~~i~l~DTpG~i 273 (376)
+|+++|+||||||||+|+|+... .+.+..+++.+... ...+ ..+.++||||..
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 59 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQE 59 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC--CccccCCcchhhEEEEEEECCEEEEEEEEECCChh
Confidence 69999999999999999999643 33455555544221 2222 247889999964
No 138
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.21 E-value=1.6e-06 Score=74.68 Aligned_cols=54 Identities=20% Similarity=0.314 Sum_probs=39.0
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i~ 274 (376)
+|+++|.+|||||||+|++++.......+..|.+.+. +.. +..+.+.||||...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~D~~G~~~ 55 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET--VEYKNVSFTVWDVGGQDK 55 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE--EEECCEEEEEEECCCChh
Confidence 4899999999999999999987633344444554432 222 44689999999753
No 139
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.21 E-value=1.5e-06 Score=74.82 Aligned_cols=54 Identities=22% Similarity=0.194 Sum_probs=37.1
Q ss_pred EEeEeecCCCCcchhhhhhhhcc--cccccCCCCceeEEEEEEeCCeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~--~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|+|++.. .....+..|.+..... .-+..+.++||||..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~-~~~~~~~l~Dt~G~~ 56 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFE-KGNLSFTAFDMSGQG 56 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEE-ECCEEEEEEECCCCH
Confidence 38899999999999999999753 1233455554433211 113467899999975
No 140
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.21 E-value=1.7e-06 Score=74.62 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=36.7
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeC---CeEEEEeCCCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGI 272 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~---~~i~l~DTpG~ 272 (376)
++|+++|.+|||||||+|+|++... .....|..+.+. ..+.++ -.+.++||||.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRF-VSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH 59 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCeEEEEEEEECCcc
Confidence 3699999999999999999997652 223334333332 223332 25779999997
No 141
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.20 E-value=2.7e-06 Score=74.18 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=37.3
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCC--CceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p--g~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
..+|+++|.+|||||||+|++.+.+ ......| |.+.....+..+. .+.+.||||--
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 63 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDS-FNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCc-CCcccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence 3689999999999999999999654 2222223 3333333333332 46889999953
No 142
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.20 E-value=1.6e-06 Score=79.85 Aligned_cols=59 Identities=31% Similarity=0.562 Sum_probs=47.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEe-CCeEEEEeCCCCcCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIPM 275 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~-~~~i~l~DTpG~i~~ 275 (376)
...+|+++|+|.||||||+..+++.+ ...+..-|||+.-. .+.. +-+|+++|-||||..
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieG 122 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEG 122 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcch-hhhhceeeeEEEeecceEEecCceEEEecCcccccc
Confidence 34689999999999999999999654 56788889998832 2333 678999999999964
No 143
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.20 E-value=1.2e-05 Score=70.62 Aligned_cols=92 Identities=21% Similarity=0.224 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHH-HHHh-cCCCeEEEEEccCCCCHHh---HHHHHHHHHHhCc-
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQWL-GNRKRILVLNREDMISMAD---RNAWATYFAKQGT- 177 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l-~~~l-~~kp~ilVlNK~DL~~~~~---~~~w~~~~~~~g~- 177 (376)
||| .++...+...+..+|+++.|+|+..+........ ..+. .++|.++|+||+|+..... ...+.+ ..+.
T Consensus 75 ~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~---~~~~~ 150 (179)
T cd01890 75 PGH-VDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIED---VLGLD 150 (179)
T ss_pred CCC-hhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHH---HhCCC
Confidence 454 3445555667889999999999987654333222 2222 3689999999999864321 122222 2232
Q ss_pred --eEEEeeCcCCcchhhhhHHHHH
Q 017132 178 --KVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 178 --~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
.++.+|+++|.|+.+|.+.+.+
T Consensus 151 ~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (179)
T cd01890 151 PSEAILVSAKTGLGVEDLLEAIVE 174 (179)
T ss_pred cccEEEeeccCCCCHHHHHHHHHh
Confidence 4788999999999988776643
No 144
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.19 E-value=2.2e-06 Score=76.44 Aligned_cols=55 Identities=20% Similarity=0.287 Sum_probs=37.6
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
..+|+++|.+|||||||+|+|.+.....+.+..+.|. ..+.. +..+.++||||..
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~ 72 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIGNIKFTTFDLGGHQ 72 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEECCEEEEEEECCCCH
Confidence 3679999999999999999999754322322233322 22222 3468899999974
No 145
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.18 E-value=2.1e-06 Score=73.96 Aligned_cols=54 Identities=22% Similarity=0.361 Sum_probs=36.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~ 272 (376)
++|+++|.||||||||+|+|++.. ......+..+.+. ..+..+. .+.++||||-
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 59 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGK-FSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ 59 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh
Confidence 369999999999999999999754 2333334333332 2333332 5679999995
No 146
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.18 E-value=1.2e-05 Score=81.82 Aligned_cols=97 Identities=14% Similarity=0.157 Sum_probs=67.8
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCC-CCC---CcHHHHHHhcCCCeEEEEEccCCCCHHhHHH----HHHHHHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIP-LST---THPLMDQWLGNRKRILVLNREDMISMADRNA----WATYFAK 174 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p-~~~---~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~----w~~~~~~ 174 (376)
-||| ..+.+.+..-+..+|+++.|+|+..+ ... ....+...++.++.++|+||+|+++.+...+ ..+++..
T Consensus 124 tPGH-~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~ 202 (460)
T PTZ00327 124 CPGH-DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKG 202 (460)
T ss_pred CCCH-HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHHHHHHHHHh
Confidence 3887 56777777778899999999999874 222 1222233344567899999999997554322 2222222
Q ss_pred ---hCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 175 ---QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 175 ---~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
.+.+++++|+.+|.|+..|.+.|.+.
T Consensus 203 ~~~~~~~iipVSA~~G~nI~~Ll~~L~~~ 231 (460)
T PTZ00327 203 TIADNAPIIPISAQLKYNIDVVLEYICTQ 231 (460)
T ss_pred hccCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence 24679999999999999998888753
No 147
>PRK13768 GTPase; Provisional
Probab=98.18 E-value=1.1e-05 Score=76.10 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=75.8
Q ss_pred cccccCCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhh--cCeEEEEEecCCCCCCCcHHHHHH-------hcCCCeEE
Q 017132 82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKL--MDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRIL 152 (376)
Q Consensus 82 ~~~~~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr--~dlILeV~DaR~p~~~~~~~l~~~-------l~~kp~il 152 (376)
..+..+.|++++| .|.|.-+-.++...+.+.+.+.+ +++|++|+|++......+.....+ ..++|.++
T Consensus 91 ~l~~~~~~~~~~d---~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~ 167 (253)
T PRK13768 91 EIESLDADYVLVD---TPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIP 167 (253)
T ss_pred HHHhcCCCEEEEe---CCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 4455677999999 33331111123334445555555 899999999987655544433332 23789999
Q ss_pred EEEccCCCCHHhHHHHHHHHH----------------------------HhC--ceEEEeeCcCCcchhhhhHHHHHhh
Q 017132 153 VLNREDMISMADRNAWATYFA----------------------------KQG--TKVIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 153 VlNK~DL~~~~~~~~w~~~~~----------------------------~~g--~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
|+||+|+.+..+.....+++. +.+ ..++.+|+.++.|+.+|.+.+.+..
T Consensus 168 v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 168 VLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred EEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 999999998765433222222 223 4678899999999998888876654
No 148
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.17 E-value=5.8e-06 Score=71.85 Aligned_cols=89 Identities=17% Similarity=0.185 Sum_probs=61.9
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCC-CCCc--H---HHHHHh---cCCCeEEEEEccCCCCHHhHHHHHHHHHHh--CceE
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPL-STTH--P---LMDQWL---GNRKRILVLNREDMISMADRNAWATYFAKQ--GTKV 179 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~-~~~~--~---~l~~~l---~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~--g~~v 179 (376)
...+.+.++.+|++++|+|+.++. ...+ . ++.... ..+|.++|+||+|+.++.....|...+... +..+
T Consensus 69 ~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 148 (170)
T cd01898 69 GHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPV 148 (170)
T ss_pred hHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCE
Confidence 344445678899999999998762 2111 1 122211 258899999999998877666666555444 4678
Q ss_pred EEeeCcCCcchhhhhHHHHH
Q 017132 180 IFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~ 199 (376)
+.+|++.+.|+.++.+.+.+
T Consensus 149 ~~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 149 FPISALTGEGLDELLRKLAE 168 (170)
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 89999999999888766543
No 149
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.17 E-value=2.1e-06 Score=73.70 Aligned_cols=54 Identities=26% Similarity=0.242 Sum_probs=35.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i 273 (376)
.+|+++|.+|||||||+|+|++.. .......++.+. ....++. .+.+.||||--
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CcCCcCCcchheEEEEEEECCEEEEEEEEECCCCc
Confidence 479999999999999999999754 223333333332 1222332 25689999963
No 150
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.17 E-value=1.8e-06 Score=76.16 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=35.5
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeC---CeEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~---~~i~l~DTpG~i 273 (376)
.+|+++|.||||||||+|++++.. . ....+.++.+. .....+ -.+.++||||.-
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGH-F-VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD 60 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C-ccccCcchhhhEEEEEEECCEEEEEEEEECCChH
Confidence 369999999999999999999654 2 23233333221 122222 246899999974
No 151
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.16 E-value=1.9e-05 Score=77.96 Aligned_cols=94 Identities=17% Similarity=0.225 Sum_probs=64.1
Q ss_pred cChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH----HHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHHHh
Q 017132 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQ 175 (376)
Q Consensus 102 w~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~----~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~~~ 175 (376)
..|.++....+.+.+.+..+|+|+.|+|+.++....+. .+...+. ++|.++|+||+|+.+...... ....
T Consensus 250 ~l~~~lie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~----~~~~ 325 (351)
T TIGR03156 250 DLPHELVAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIER----LEEG 325 (351)
T ss_pred cCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHH----HHhC
Confidence 34555544455556678999999999999987654332 1112222 689999999999987544322 1122
Q ss_pred CceEEEeeCcCCcchhhhhHHHHH
Q 017132 176 GTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 176 g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
...++++|+++|.|+++|.+.+.+
T Consensus 326 ~~~~i~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 326 YPEAVFVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred CCCEEEEEccCCCCHHHHHHHHHh
Confidence 345789999999999998777653
No 152
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.16 E-value=7.2e-06 Score=81.85 Aligned_cols=89 Identities=24% Similarity=0.268 Sum_probs=68.3
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH-HhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcc
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ-WLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMG 189 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~-~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~g 189 (376)
.+..++.++++|+||+|+|+..+....+..+.. ...++|+++|+||+||.++...... ....+..++.+|+++|.|
T Consensus 287 IeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~~~---~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 287 IERAKKAIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELESE---KLANGDAIISISAKTGEG 363 (454)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccchh---hccCCCceEEEEecCccC
Confidence 445567799999999999999987777776666 4457999999999999987653221 112234689999999999
Q ss_pred hhhhhHHHHHhhh
Q 017132 190 TMKLSRLAKALAS 202 (376)
Q Consensus 190 i~~L~~~l~~l~~ 202 (376)
+..|++.+.++..
T Consensus 364 l~~L~~~i~~~~~ 376 (454)
T COG0486 364 LDALREAIKQLFG 376 (454)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888876643
No 153
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.16 E-value=6.9e-06 Score=80.27 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCC-----Cc---HHHHHH---hcCCCeEEEEEccCCCCHHhHHHHHHHHHH-hCc
Q 017132 110 TEKELKDQLKLMDVVIEVRDARIPLST-----TH---PLMDQW---LGNRKRILVLNREDMISMADRNAWATYFAK-QGT 177 (376)
Q Consensus 110 ~~k~l~~vidr~dlILeV~DaR~p~~~-----~~---~~l~~~---l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~-~g~ 177 (376)
+...+.+.++++|++++|+|+.....+ .. .++..+ +.++|.++|+||+|+.+......+.+.+.+ .+.
T Consensus 225 Lg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~ 304 (329)
T TIGR02729 225 LGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGK 304 (329)
T ss_pred HHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCC
Confidence 444556778999999999998864211 11 112222 136899999999999887665556555543 356
Q ss_pred eEEEeeCcCCcchhhhhHHHHH
Q 017132 178 KVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 178 ~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
.++++|++++.|+.+|.+.+.+
T Consensus 305 ~vi~iSAktg~GI~eL~~~I~~ 326 (329)
T TIGR02729 305 PVFPISALTGEGLDELLYALAE 326 (329)
T ss_pred cEEEEEccCCcCHHHHHHHHHH
Confidence 7899999999999988776654
No 154
>PRK00089 era GTPase Era; Reviewed
Probab=98.16 E-value=4.1e-05 Score=73.40 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCcccChhH-H-HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCC-C
Q 017132 87 DADLYYWTKSLRPVQWYPGH-I-AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI-S 161 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh-~-~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~-~ 161 (376)
+..++++| +|...-+.+ . ..+.+.....+..+|+|++|+|+..+.......+...+. +.|.++|+||+|+. +
T Consensus 52 ~~qi~~iD---TPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~ 128 (292)
T PRK00089 52 DAQIIFVD---TPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD 128 (292)
T ss_pred CceEEEEE---CCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC
Confidence 45677777 444322221 1 112334446689999999999998866655555555554 57999999999999 5
Q ss_pred HHhHHHHHHHHHHh--CceEEEeeCcCCcchhhhhHHHHHhhh
Q 017132 162 MADRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (376)
Q Consensus 162 ~~~~~~w~~~~~~~--g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (376)
........+.+.+. ...++.+|++++.|+.+|.+.+.+..+
T Consensus 129 ~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 129 KEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 55555555555442 257889999999999999888776543
No 155
>PRK09866 hypothetical protein; Provisional
Probab=98.15 E-value=3.1e-05 Score=80.51 Aligned_cols=90 Identities=14% Similarity=0.062 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--C--CCeEEEEEccCCCC-----HHhHHHHHH-HHHHhC---
Q 017132 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N--RKRILVLNREDMIS-----MADRNAWAT-YFAKQG--- 176 (376)
Q Consensus 110 ~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~--kp~ilVlNK~DL~~-----~~~~~~w~~-~~~~~g--- 176 (376)
+.+.+.+.++.+|+||+|+|+..+.+..+..+.+.+. + .|+++|+||+|+.+ .+....+.. .+.+.+
T Consensus 248 L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f 327 (741)
T PRK09866 248 LQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITP 327 (741)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCC
Confidence 4556667899999999999998877777767766554 3 49999999999986 333333332 222222
Q ss_pred ceEEEeeCcCCcchhhhhHHHHH
Q 017132 177 TKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 177 ~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
..++++|+++|.|+..|.+.+..
T Consensus 328 ~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 328 QQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred ceEEEEeCCCCCCHHHHHHHHHh
Confidence 46999999999999999888765
No 156
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.15 E-value=2.8e-06 Score=73.77 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=37.5
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i 273 (376)
.+|+++|.+|||||||+|++.+.. ......|..+.+. ..+..+. .+.+.||||.-
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 62 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 62 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 579999999999999999999654 2233344444333 2233322 47899999953
No 157
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.14 E-value=4.1e-06 Score=72.75 Aligned_cols=55 Identities=22% Similarity=0.371 Sum_probs=35.5
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccc-cCCCCceeEEEEEEeCC---eEEEEeCCCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGI 272 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pg~T~~~~~~~~~~---~i~l~DTpG~ 272 (376)
.+|+++|.+|||||||+|+|.+...... ....|+......+.++. .+.+.||||-
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~ 62 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCCh
Confidence 5799999999999999999986432111 11122222223344433 5789999995
No 158
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.13 E-value=2.1e-05 Score=69.22 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHh
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD 164 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~ 164 (376)
+.++.++| .||+. .........+..+|.++.|+|+..+......++.... .++|.++|+||+|+..+..
T Consensus 61 ~~~~~liD--------tpG~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~ 131 (189)
T cd00881 61 DRRVNFID--------TPGHE-DFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEED 131 (189)
T ss_pred CEEEEEEe--------CCCcH-HHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhc
Confidence 34566666 24432 3344555677899999999999877654443433333 3789999999999987443
Q ss_pred HHH----HHHHHHH--------------hCceEEEeeCcCCcchhhhhHHHHH
Q 017132 165 RNA----WATYFAK--------------QGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 165 ~~~----w~~~~~~--------------~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
... ..+.+.. ....++++|+++|.|+.++.+.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~ 184 (189)
T cd00881 132 LEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVE 184 (189)
T ss_pred HHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHh
Confidence 222 2222222 2467888999999999888766554
No 159
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.13 E-value=3.2e-06 Score=77.35 Aligned_cols=53 Identities=23% Similarity=0.225 Sum_probs=38.6
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEeC----CeEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG----KDLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~~----~~i~l~DTpG~ 272 (376)
+|++||++|||||||+|+|.+.. ......|.++.+... +.++ -.+.+.||||-
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~-~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~ 60 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEG-FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQ 60 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCc
Confidence 69999999999999999999653 334455666666433 3332 24679999995
No 160
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.13 E-value=3.2e-06 Score=73.58 Aligned_cols=53 Identities=25% Similarity=0.402 Sum_probs=34.2
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~ 272 (376)
+|+++|.+|||||||+|+|.+.. ......+-.+.+. ..+..+. .+.++||||.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~ 59 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ 59 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCcCcCCccceEEEEEEEEECCEEEEEEEEeCCCh
Confidence 69999999999999999998754 2222222222222 2223322 3568999996
No 161
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.13 E-value=3.6e-06 Score=71.49 Aligned_cols=53 Identities=25% Similarity=0.284 Sum_probs=36.2
Q ss_pred EeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
|+++|.+|||||||+|+|++.. ......|.+..+...... +..+.+.||||..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 55 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ-FSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQP 55 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC-CCcCccCCCCcceEEEEECCEEEEEEECCCCH
Confidence 7999999999999999999754 223334433333322222 2357899999963
No 162
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.12 E-value=3.2e-06 Score=72.96 Aligned_cols=53 Identities=25% Similarity=0.428 Sum_probs=35.6
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeE--EEEEEeCC---eEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~--~~~~~~~~---~i~l~DTpG~ 272 (376)
+|+++|.+|||||||+|+|.+.+ ......+..+.+ ...+.++. .+.+.||||.
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~ 59 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENK-FKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeeEEEEEEEECCEEEEEEEEECcch
Confidence 69999999999999999998654 222222333322 22333332 4679999996
No 163
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.12 E-value=2.4e-06 Score=73.88 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=36.3
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i~ 274 (376)
+|+++|.+|||||||+|++.+.. .......++.+.. ...++. .+.++||||.-.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 60 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH--FVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc--CCcccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 69999999999999999999754 2233334443322 222322 466899999753
No 164
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.12 E-value=2.6e-06 Score=73.46 Aligned_cols=54 Identities=22% Similarity=0.229 Sum_probs=36.4
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i 273 (376)
.+|+++|.||||||||+|++.+.. .+...+.++.+. ..+.++. .+.+.||||.-
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC--CCcccCCchhhhEEEEEEECCEEEEEEEEECCCcc
Confidence 479999999999999999998643 233334444332 2233332 35679999974
No 165
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.11 E-value=3.6e-06 Score=72.56 Aligned_cols=53 Identities=26% Similarity=0.315 Sum_probs=35.4
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeC-----CeEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-----KDLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~-----~~i~l~DTpG~ 272 (376)
+|+++|.+|||||||+|++++.. ......|..+.+.. .+.+. -.+.+.||||-
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGI-FTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch
Confidence 69999999999999999999653 22222343334432 22222 25789999995
No 166
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.11 E-value=3.6e-06 Score=72.66 Aligned_cols=53 Identities=25% Similarity=0.409 Sum_probs=34.8
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|+|+........+..|.+ ...+.. +..+.++||||..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~ 54 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFN--VETVTYKNLKFQVWDLGGQT 54 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcC--eEEEEECCEEEEEEECCCCH
Confidence 4899999999999999999765433222222222 212222 3468899999984
No 167
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.10 E-value=4.7e-06 Score=74.50 Aligned_cols=54 Identities=26% Similarity=0.421 Sum_probs=36.0
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeE---EEEEEeCC---eEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV---LKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~---~~~~~~~~---~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|++++.. ...+....++.. ...+.++. .+.+.||||--
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC-cCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCch
Confidence 69999999999999999999754 333333333322 23344433 35689999974
No 168
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.09 E-value=3.5e-06 Score=73.08 Aligned_cols=54 Identities=22% Similarity=0.190 Sum_probs=37.0
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
.+|+++|.+|||||||+|++.... ...+.+.++.+.. .+.++. .+.+.||||.-
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTE 60 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcc
Confidence 479999999999999999998542 3444445554432 223332 35689999974
No 169
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.09 E-value=2.3e-06 Score=72.40 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=31.1
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeCCeEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~ 272 (376)
+|++||.+|||||||+|+|++... ... .|....+ .. .++||||.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~---~~~--~t~~~~~---~~--~~iDt~G~ 45 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI---LYK--KTQAVEY---ND--GAIDTPGE 45 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc---ccc--cceeEEE---cC--eeecCchh
Confidence 589999999999999999997642 111 1222222 22 67899997
No 170
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.09 E-value=3.6e-06 Score=78.64 Aligned_cols=57 Identities=30% Similarity=0.460 Sum_probs=48.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccc-c-ccCCCCceeEEEEEEeCCeEEEEeCCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-P-AAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~-v~~~pg~T~~~~~~~~~~~i~l~DTpG~ 272 (376)
+.+++++.|.+|||||||||.++..+.. . .+.++|-|+..+.++++..++++|-||.
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~ 193 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGY 193 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCc
Confidence 3467999999999999999999875533 2 3448999999999999999999999994
No 171
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.08 E-value=5.1e-06 Score=72.97 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=38.0
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
.++|.++|.+|||||||+|+|...... ...|.++.+...+.. +..+.+.||||.-
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~--~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~ 64 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV--TTIPTVGFNVETVTYKNVKFNVWDVGGQD 64 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc--cccCCcccceEEEEECCEEEEEEECCCCH
Confidence 468999999999999999999854422 233433333333333 3468899999984
No 172
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.08 E-value=5e-06 Score=74.04 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=36.5
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 272 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~ 272 (376)
..+|+++|.+|||||||+|+|.+.......+..+.+. ..+.. +..+.++||||-
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~ 73 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGNIKFKTFDLGGH 73 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECCEEEEEEECCCC
Confidence 4579999999999999999999754322222222221 22223 446789999995
No 173
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.08 E-value=6.4e-06 Score=71.70 Aligned_cols=55 Identities=25% Similarity=0.251 Sum_probs=36.0
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCce--eEEEEEEeC---CeEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFG---KDLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T--~~~~~~~~~---~~i~l~DTpG~i 273 (376)
.+|+++|.+|||||||+|+|++.+- .....|.++ -....+..+ -.+.+.||||.-
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 4799999999999999999997542 222223222 222222222 247899999964
No 174
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.08 E-value=3.5e-05 Score=66.49 Aligned_cols=84 Identities=17% Similarity=0.255 Sum_probs=62.7
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH--HhHHHHHHHHHHh-----CceEEEeeCcC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYFAKQ-----GTKVIFSNGQL 186 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~--~~~~~w~~~~~~~-----g~~vi~iSa~~ 186 (376)
..+..+|+++.|+|+..+.+.....+.... .++|+++++||+|+.+. .....+.+.+.+. +..++++|++.
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALT 159 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccC
Confidence 457899999999999988776555544443 37899999999999876 4445555555432 25688899999
Q ss_pred CcchhhhhHHHHH
Q 017132 187 GMGTMKLSRLAKA 199 (376)
Q Consensus 187 g~gi~~L~~~l~~ 199 (376)
+.|+.++.+.+.+
T Consensus 160 ~~~i~~~~~~l~~ 172 (174)
T cd01895 160 GQGVDKLFDAIDE 172 (174)
T ss_pred CCCHHHHHHHHHH
Confidence 9999888776654
No 175
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.07 E-value=4.5e-06 Score=87.42 Aligned_cols=58 Identities=26% Similarity=0.399 Sum_probs=45.5
Q ss_pred CCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CC-eEEEEeCCCCc
Q 017132 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GK-DLEFLDSPGII 273 (376)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~-~i~l~DTpG~i 273 (376)
.++++|+++|.+|+|||||+|+|.+.. ...+..+|+|.+.....+ +. .+.++||||.-
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~-v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe 146 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTK-VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHE 146 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC-cccccCCceeecceEEEEEECCCcEEEEEECCCCc
Confidence 456789999999999999999999754 445667889988644332 33 79999999974
No 176
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.07 E-value=3.7e-06 Score=73.34 Aligned_cols=53 Identities=25% Similarity=0.291 Sum_probs=34.9
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE-EEe---CCeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW-VRF---GKDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~-~~~---~~~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|+|.+... .+..+.++-+.+. ... .-.+.++||||.-
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 58 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEF--PENVPRVLPEITIPADVTPERVPTTIVDTSSRP 58 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC--CccCCCcccceEeeeeecCCeEEEEEEeCCCch
Confidence 699999999999999999987542 2333332222111 111 2357899999974
No 177
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.07 E-value=5e-06 Score=71.27 Aligned_cols=53 Identities=25% Similarity=0.387 Sum_probs=34.9
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~ 272 (376)
+|+++|.+|||||||+|+|.+... .....+.++.+.. .+.... .+.+.||||-
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 59 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKF-NEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ 59 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCcCCccceeEEEEEEEECCEEEEEEEEECCch
Confidence 699999999999999999997542 2222233323322 222222 4789999995
No 178
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.07 E-value=3.2e-06 Score=72.30 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=38.6
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEeC---CeEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG---KDLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~~---~~i~l~DTpG~i~ 274 (376)
+|+++|.+|||||||+|+|++.. ..+....+|.+... +..+ -.+.++||||...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 59 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEE 59 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHH
Confidence 48999999999999999999754 44555555555332 2333 2467899999753
No 179
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.06 E-value=4.1e-05 Score=65.30 Aligned_cols=111 Identities=22% Similarity=0.222 Sum_probs=77.7
Q ss_pred cCCcEEEEcCCCCCcccChhHH--HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCC-
Q 017132 86 LDADLYYWTKSLRPVQWYPGHI--AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMI- 160 (376)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~PGh~--~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~- 160 (376)
.+.+++++| +|..-.+.+. ....+.....+..+|+++.|+|+..+.......+.+.+. +.|.++|+||+|+.
T Consensus 49 ~~~~~~liD---tpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 49 DDAQIIFVD---TPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred CCeEEEEEE---CCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence 346677787 3433222221 122334456689999999999999885555555555544 48999999999999
Q ss_pred CHHhHHHHHHHHHHhC--ceEEEeeCcCCcchhhhhHHHHH
Q 017132 161 SMADRNAWATYFAKQG--TKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 161 ~~~~~~~w~~~~~~~g--~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
.......+...+.... .+++.+|++.+.|+.++.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~ 166 (168)
T cd04163 126 DKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVK 166 (168)
T ss_pred cHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHh
Confidence 5566667777776654 57888999999999888777654
No 180
>PRK12735 elongation factor Tu; Reviewed
Probab=98.06 E-value=5.5e-06 Score=83.03 Aligned_cols=57 Identities=25% Similarity=0.419 Sum_probs=42.7
Q ss_pred CceEEeEeecCCCCcchhhhhhhhc------ccc---------cccCCCCceeEEEEEEe---CCeEEEEeCCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKR------RMC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~------~~~---------~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~ 272 (376)
..++|+++|.+|+|||||+|+|++. ... ..+...|+|.+...... +..+.++||||.
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH 85 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH
Confidence 4578999999999999999999852 111 11225789998765554 446899999997
No 181
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.06 E-value=1.6e-05 Score=77.79 Aligned_cols=92 Identities=20% Similarity=0.274 Sum_probs=62.1
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCCCc-----HHHHHH---hcCCCeEEEEEccCCCCHHhHH-H-HHHHHHHhCceE
Q 017132 110 TEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQW---LGNRKRILVLNREDMISMADRN-A-WATYFAKQGTKV 179 (376)
Q Consensus 110 ~~k~l~~vidr~dlILeV~DaR~p~~~~~-----~~l~~~---l~~kp~ilVlNK~DL~~~~~~~-~-w~~~~~~~g~~v 179 (376)
+...+.+.+++++++++|+|+..+....+ .++..+ +.++|.++|+||+|+.+..... . ...+....+..+
T Consensus 226 Lg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i 305 (335)
T PRK12299 226 LGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPV 305 (335)
T ss_pred HHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCE
Confidence 44556678899999999999986542111 112221 1268999999999998654322 1 222233445678
Q ss_pred EEeeCcCCcchhhhhHHHHHhh
Q 017132 180 IFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~ 201 (376)
+++|++++.|+++|.+.+.+..
T Consensus 306 ~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 306 FLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 9999999999999887776554
No 182
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.06 E-value=3.5e-06 Score=76.34 Aligned_cols=54 Identities=31% Similarity=0.567 Sum_probs=37.3
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|++.+... .....|.++.+.. .+..+. .+.++||||.-
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f-~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 60 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEF-PEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCC-CcccCCccccccceeEEEECCEEEEEEEEeCCCcc
Confidence 699999999999999999996542 2223455544432 233333 46799999975
No 183
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.05 E-value=5.7e-06 Score=71.88 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=35.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeE-EEEEEe---CCeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~-~~~~~~---~~~i~l~DTpG~i~ 274 (376)
++|+++|.+|||||||+|+|++.+. .....|-.... ...... .-.+.++||||...
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~ 60 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF-PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE 60 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 3699999999999999999997642 22222221111 111122 22478999999864
No 184
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.05 E-value=7.1e-06 Score=73.03 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=36.5
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe------CCeEEEEeCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF------GKDLEFLDSPGI 272 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~------~~~i~l~DTpG~ 272 (376)
.++|+++|.+|||||||+|++..... +...|..+.+...+.+ +-.+.+.||||.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 62 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEF--VNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ 62 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc--CCcCCccccceeEEEeeccCCCceEEEEEECCCc
Confidence 46899999999999999999986543 2334432222222222 235789999996
No 185
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.05 E-value=2.8e-05 Score=79.60 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=63.3
Q ss_pred HHHHHHhhhcCeEEEEEecCCCC------CCCc---HHHHHH------------hcCCCeEEEEEccCCCCHHhHHHH-H
Q 017132 112 KELKDQLKLMDVVIEVRDARIPL------STTH---PLMDQW------------LGNRKRILVLNREDMISMADRNAW-A 169 (376)
Q Consensus 112 k~l~~vidr~dlILeV~DaR~p~------~~~~---~~l~~~------------l~~kp~ilVlNK~DL~~~~~~~~w-~ 169 (376)
..+.+.++++|+|++|+|+.... ...+ .++..+ +..+|+++|+||+|+.+......+ .
T Consensus 228 ~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~ 307 (500)
T PRK12296 228 LDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVR 307 (500)
T ss_pred HHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHH
Confidence 34556789999999999996532 1111 133332 236899999999999765543333 3
Q ss_pred HHHHHhCceEEEeeCcCCcchhhhhHHHHHhhh
Q 017132 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (376)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (376)
..+...+..++++|+.++.|+.+|...+.++..
T Consensus 308 ~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 308 PELEARGWPVFEVSAASREGLRELSFALAELVE 340 (500)
T ss_pred HHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555778999999999999998877766544
No 186
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.05 E-value=7.4e-06 Score=71.52 Aligned_cols=54 Identities=26% Similarity=0.310 Sum_probs=35.6
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeC---CeEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~---~~i~l~DTpG~i 273 (376)
.+|+++|.||||||||+|++.+... ......++.+. ....++ -.+.++||||.-
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTE 60 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcc
Confidence 4699999999999999999986542 22222233222 222232 256799999974
No 187
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.05 E-value=4.6e-06 Score=79.31 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=39.2
Q ss_pred EEeEeecCCCCcchhhhhhhhccc-----ccc------------cCCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRM-----CPA------------APRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~-----~~v------------~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
+|+++|.+|+|||||+|+|+.... ..+ +...|+|.+.....+ +..+.++||||...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH
Confidence 389999999999999999963211 011 124578877544333 55789999999753
No 188
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.04 E-value=5.2e-06 Score=72.27 Aligned_cols=55 Identities=27% Similarity=0.307 Sum_probs=34.7
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCC--CceeEEEEEEeC---CeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVRFG---KDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p--g~T~~~~~~~~~---~~i~l~DTpG~i~ 274 (376)
.+|++||.+|||||||+|++++..- .....| +.+. ......+ ..+.+.||||.-.
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 61 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF-RESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQ 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCc
Confidence 4799999999999999999986542 111111 1111 1111222 2477999999853
No 189
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.04 E-value=7.1e-06 Score=73.51 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=35.2
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCce-eEE--EEEEeCC---eEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT-RVL--KWVRFGK---DLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T-~~~--~~~~~~~---~i~l~DTpG~ 272 (376)
+|++||.+|||||||+|++.+.. ...+..+.++ .+. ..+.++. .+.+.||||-
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 60 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGA-FLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ 60 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc
Confidence 69999999999999999998654 2233332222 232 2233332 5778999994
No 190
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.03 E-value=2.7e-05 Score=66.20 Aligned_cols=82 Identities=20% Similarity=0.240 Sum_probs=63.7
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcchhh
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK 192 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi~~ 192 (376)
.....+.++|+++.|+|+..+....+.++......+|.++|+||+|+.+.... .....+..++.+|++++.|+..
T Consensus 73 ~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~ 147 (157)
T cd04164 73 RAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDE 147 (157)
T ss_pred HHHHHHhhCCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHH
Confidence 34456789999999999998877766666555568999999999999876543 2223356789999999999998
Q ss_pred hhHHHHH
Q 017132 193 LSRLAKA 199 (376)
Q Consensus 193 L~~~l~~ 199 (376)
+.+.+..
T Consensus 148 l~~~l~~ 154 (157)
T cd04164 148 LKEALLE 154 (157)
T ss_pred HHHHHHH
Confidence 8777654
No 191
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.02 E-value=6.2e-06 Score=72.23 Aligned_cols=52 Identities=27% Similarity=0.298 Sum_probs=37.1
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~ 272 (376)
+|+++|.+|||||||+|+|++.......+..|.+.. .+.. +..+.+.||||-
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~ 53 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGG 53 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEECCEEEEEEECCCc
Confidence 378999999999999999997533334455555432 2333 346889999995
No 192
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.99 E-value=0.0001 Score=61.98 Aligned_cols=110 Identities=17% Similarity=0.168 Sum_probs=73.3
Q ss_pred CCcEEEEcCCCCCcccChhHH-HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH--hcCCCeEEEEEccCCCCHH
Q 017132 87 DADLYYWTKSLRPVQWYPGHI-AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW--LGNRKRILVLNREDMISMA 163 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~-~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~--l~~kp~ilVlNK~DL~~~~ 163 (376)
+.++.++|- |.+-..+++ ......+...+..+|+++.|+|+..+.......+... ..+.|.++|+||+|+....
T Consensus 44 ~~~~~~~Dt---~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 120 (163)
T cd00880 44 LGPVVLIDT---PGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEE 120 (163)
T ss_pred CCcEEEEEC---CCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChh
Confidence 556777773 222122122 2223455577899999999999998776655542222 2478999999999999887
Q ss_pred hHHHHHH---HH--HHhCceEEEeeCcCCcchhhhhHHHHH
Q 017132 164 DRNAWAT---YF--AKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 164 ~~~~w~~---~~--~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
....+.. .. ...+..++++|+.++.|+.++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~ 161 (163)
T cd00880 121 EEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIE 161 (163)
T ss_pred hHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHh
Confidence 6666532 11 122467888999999999888776643
No 193
>PRK15494 era GTPase Era; Provisional
Probab=97.99 E-value=4.5e-05 Score=74.90 Aligned_cols=92 Identities=16% Similarity=0.091 Sum_probs=64.2
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHHHhC--ceEEEeeCcC
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG--TKVIFSNGQL 186 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g--~~vi~iSa~~ 186 (376)
.+.....+..+|+|+.|+|+..+.......+...+. +.|.++|+||+|+.+.. .....+++...+ ..++++||++
T Consensus 122 ~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~iSAkt 200 (339)
T PRK15494 122 VRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPISALS 200 (339)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEEeccC
Confidence 344445688999999999998766555444444332 56889999999997542 333334444433 4688999999
Q ss_pred CcchhhhhHHHHHhhhh
Q 017132 187 GMGTMKLSRLAKALASD 203 (376)
Q Consensus 187 g~gi~~L~~~l~~l~~~ 203 (376)
|.|+.+|.+.+.+..+.
T Consensus 201 g~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 201 GKNIDGLLEYITSKAKI 217 (339)
T ss_pred ccCHHHHHHHHHHhCCC
Confidence 99999998887765543
No 194
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.98 E-value=5.1e-05 Score=80.13 Aligned_cols=99 Identities=16% Similarity=0.132 Sum_probs=69.5
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCC-eEEEEEccCCCCHHhHH----HHHHHHHHh
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRN----AWATYFAKQ 175 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp-~ilVlNK~DL~~~~~~~----~w~~~~~~~ 175 (376)
-||| .++.+.+...+..+|+++.|+|+..+......+...++. +.+ .++|+||+|+++++... .+.+.+...
T Consensus 58 tPGh-e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~ 136 (614)
T PRK10512 58 VPGH-EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREY 136 (614)
T ss_pred CCCH-HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhc
Confidence 3888 456677777789999999999998865544333333332 445 57999999999754332 333334333
Q ss_pred C---ceEEEeeCcCCcchhhhhHHHHHhhh
Q 017132 176 G---TKVIFSNGQLGMGTMKLSRLAKALAS 202 (376)
Q Consensus 176 g---~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (376)
+ .+++++|+.+|.|+..|.+.+.++..
T Consensus 137 ~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 137 GFAEAKLFVTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhc
Confidence 3 46899999999999999888876643
No 195
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.98 E-value=9.4e-06 Score=71.12 Aligned_cols=51 Identities=20% Similarity=0.250 Sum_probs=35.5
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEe-CCeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~-~~~i~l~DTpG~i 273 (376)
+|.++|.+|||||||+|+|.+.. ... +..|... ..+.. +..+.++||||..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~--~~~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~ 54 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE--FMQ--PIPTIGFNVETVEYKNLKFTIWDVGGKH 54 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC--CCC--cCCcCceeEEEEEECCEEEEEEECCCCh
Confidence 48899999999999999998753 222 3344432 22222 3367899999974
No 196
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.97 E-value=1.1e-05 Score=70.16 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=36.6
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
-.+|+++|.+|||||||+|+|++.. ......+..+.+.. .+.++. .+.+.||||.-
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 3679999999999999999998543 22223333333332 223322 36788999963
No 197
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.97 E-value=5.5e-05 Score=79.47 Aligned_cols=99 Identities=19% Similarity=0.160 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHhHH----HHHHHHHHh-
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADRN----AWATYFAKQ- 175 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp-~ilVlNK~DL~~~~~~~----~w~~~~~~~- 175 (376)
||| .++.+.+...+..+|+++.|+|+..+......+...++ .+.| .++|+||+|+++.+... ...+.+...
T Consensus 58 PGh-e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~ 136 (581)
T TIGR00475 58 PGH-EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI 136 (581)
T ss_pred CCH-HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 787 55667777778899999999999875432222211222 2456 99999999999865322 222223332
Q ss_pred ---CceEEEeeCcCCcchhhhhHHHHHhhhh
Q 017132 176 ---GTKVIFSNGQLGMGTMKLSRLAKALASD 203 (376)
Q Consensus 176 ---g~~vi~iSa~~g~gi~~L~~~l~~l~~~ 203 (376)
+.+++++|+.+|.|+.++.+.+.++...
T Consensus 137 ~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 137 FLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 3578899999999999988877666543
No 198
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.97 E-value=7.5e-06 Score=88.08 Aligned_cols=59 Identities=31% Similarity=0.508 Sum_probs=46.6
Q ss_pred CCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCc
Q 017132 214 LPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (376)
Q Consensus 214 ~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i 273 (376)
..+++.|+++|.+|+|||||+|+|++.+ +..+..+|+|.+...+.+ +..+.++||||.-
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~-v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe 348 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTN-VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHE 348 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCC-ccccccCceeeeccEEEEEECCEEEEEEECCCCc
Confidence 3467789999999999999999998654 455667888988654433 4578999999974
No 199
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.97 E-value=1.5e-05 Score=69.41 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=36.2
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCce---eEEEEEEeCC---eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT---RVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T---~~~~~~~~~~---~i~l~DTpG~i 273 (376)
.+|.++|.+|||||||+|++.+.. .....+.++ .....+.++. .+.+.||||--
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 62 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 579999999999999999998653 223333332 2222334432 46899999963
No 200
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.97 E-value=1.2e-05 Score=71.64 Aligned_cols=55 Identities=29% Similarity=0.381 Sum_probs=36.4
Q ss_pred EEeEeecCCCCcchhhhhhhhccccc-ccCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|++.+..... ..+..|.+.....+.++. .+.+.||||.-
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~ 60 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQE 60 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 69999999999999999999654211 222333333333344432 35789999963
No 201
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.97 E-value=1.3e-05 Score=70.02 Aligned_cols=53 Identities=21% Similarity=0.175 Sum_probs=35.2
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|++.+.+- ......++.+.. .+.++. .+.++||||--
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 59 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE 59 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcc
Confidence 699999999999999999986542 232333333321 233333 25689999964
No 202
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.96 E-value=2.7e-05 Score=77.81 Aligned_cols=93 Identities=16% Similarity=0.211 Sum_probs=61.6
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCC---Cc-HHHHHHh-------cCCCeEEEEEccCCCCHHhHHHHHHHHHHh-C-
Q 017132 110 TEKELKDQLKLMDVVIEVRDARIPLST---TH-PLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFAKQ-G- 176 (376)
Q Consensus 110 ~~k~l~~vidr~dlILeV~DaR~p~~~---~~-~~l~~~l-------~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~-g- 176 (376)
+...+.+.++++|++++|+|+...... .+ ..+.+.+ ..+|.++|+||+|+.+..+.......+.+. +
T Consensus 227 Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~ 306 (390)
T PRK12298 227 LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGW 306 (390)
T ss_pred HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCC
Confidence 344555679999999999998722111 00 1111111 258999999999998766554444444332 3
Q ss_pred -ceEEEeeCcCCcchhhhhHHHHHhhh
Q 017132 177 -TKVIFSNGQLGMGTMKLSRLAKALAS 202 (376)
Q Consensus 177 -~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (376)
..++++|++++.|+.+|.+.+.++.+
T Consensus 307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L~ 333 (390)
T PRK12298 307 EGPVYLISAASGLGVKELCWDLMTFIE 333 (390)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHhh
Confidence 36889999999999998877766544
No 203
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.96 E-value=1.2e-05 Score=69.55 Aligned_cols=54 Identities=26% Similarity=0.289 Sum_probs=35.2
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCce-eEE--EEEEe--C--CeEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT-RVL--KWVRF--G--KDLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T-~~~--~~~~~--~--~~i~l~DTpG~ 272 (376)
+|++||.+|||||||+|+|.........+...++ -+. ....+ + -.+.+.||||.
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 62 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQ 62 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCH
Confidence 6999999999999999999854222333333333 222 12222 2 25789999995
No 204
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.94 E-value=6.3e-05 Score=75.68 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=65.1
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCC-CCCc-HHHH--HHhcCCCeEEEEEccCCCCHHhHHH----HHHHHHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTH-PLMD--QWLGNRKRILVLNREDMISMADRNA----WATYFAK 174 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~-~~~~-~~l~--~~l~~kp~ilVlNK~DL~~~~~~~~----w~~~~~~ 174 (376)
.||| ..+.+.+...+..+|+++.|+|++.+. .... ..+. ..+..++.++|+||+|+.+.+.... ..+.+..
T Consensus 87 tPGh-~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~ 165 (406)
T TIGR03680 87 APGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKG 165 (406)
T ss_pred CCCH-HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhh
Confidence 3787 456666777778899999999999764 2221 1222 2223467899999999997643321 1222222
Q ss_pred h---CceEEEeeCcCCcchhhhhHHHHHh
Q 017132 175 Q---GTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 175 ~---g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
. +..++++|+++|.|+..|.+.+...
T Consensus 166 ~~~~~~~ii~vSA~~g~gi~~L~e~L~~~ 194 (406)
T TIGR03680 166 TVAENAPIIPVSALHNANIDALLEAIEKF 194 (406)
T ss_pred cccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence 1 3568899999999999988887764
No 205
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.94 E-value=9.1e-06 Score=85.28 Aligned_cols=54 Identities=28% Similarity=0.416 Sum_probs=41.1
Q ss_pred EEeEeecCCCCcchhhhhhhhcc--cccccCCCCceeEEEEEEe---CCeEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~--~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~ 272 (376)
.|+++|++|+|||||+|+|++.. ....+..+|+|.+.....+ +..+.++||||.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGh 60 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGH 60 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCH
Confidence 58999999999999999999743 1223446799988754333 346889999994
No 206
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.94 E-value=1.6e-05 Score=69.08 Aligned_cols=56 Identities=29% Similarity=0.387 Sum_probs=34.3
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccc-cCCCCceeEEEEEEeC-C--eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFG-K--DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pg~T~~~~~~~~~-~--~i~l~DTpG~i 273 (376)
++|++||.+|||||||+|++.+...... .+..+.+.......++ . .+.+.||||.-
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 3699999999999999999986432111 1111222222222232 2 46789999974
No 207
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.94 E-value=1.3e-05 Score=69.78 Aligned_cols=55 Identities=24% Similarity=0.323 Sum_probs=35.4
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeC-C--eEEEEeCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGI 272 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~-~--~i~l~DTpG~ 272 (376)
.++|+++|.+|||||||+|++.+.. ......+..+.+. ..+.++ . .+.+.||||-
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~ 64 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQ 64 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC-CCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCCh
Confidence 4789999999999999999998643 2222222222222 222332 2 4678899995
No 208
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.93 E-value=3.1e-05 Score=66.19 Aligned_cols=80 Identities=19% Similarity=0.131 Sum_probs=56.6
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHH-HHh-cCCCeEEEEEccCCCCHHhHHHHHHHHH-HhCceEEEeeCcCCcchhhhhH
Q 017132 119 KLMDVVIEVRDARIPLSTTHPLMD-QWL-GNRKRILVLNREDMISMADRNAWATYFA-KQGTKVIFSNGQLGMGTMKLSR 195 (376)
Q Consensus 119 dr~dlILeV~DaR~p~~~~~~~l~-~~l-~~kp~ilVlNK~DL~~~~~~~~w~~~~~-~~g~~vi~iSa~~g~gi~~L~~ 195 (376)
+.+|+++.|+|+..+... ..+. .+. .++|+++|+||+|+.+......+...+. ..+..++.+|+..|.|+.++.+
T Consensus 73 ~~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 73 EKPDLIVNVVDATNLERN--LYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred CCCcEEEEEeeCCcchhH--HHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence 599999999999875332 2222 222 4789999999999987644333333333 3467899999999999998877
Q ss_pred HHHHh
Q 017132 196 LAKAL 200 (376)
Q Consensus 196 ~l~~l 200 (376)
.+..+
T Consensus 151 ~l~~~ 155 (158)
T cd01879 151 AIAEL 155 (158)
T ss_pred HHHHH
Confidence 66554
No 209
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.93 E-value=1.7e-05 Score=71.55 Aligned_cols=57 Identities=26% Similarity=0.339 Sum_probs=36.2
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccc-cccCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|++.+.... ...+..|.......+.++. .+.|.||||--
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCch
Confidence 468999999999999999999865421 1112222222222333322 46799999963
No 210
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.92 E-value=1.2e-05 Score=79.36 Aligned_cols=60 Identities=23% Similarity=0.214 Sum_probs=37.6
Q ss_pred ceEEeEeecCCCCcchhhhhhhhc-----ccccccCCCCceeEEEEEEe--CCeEEEEeCCCCcCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPMRI 277 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~-----~~~~v~~~pg~T~~~~~~~~--~~~i~l~DTpG~i~~~~ 277 (376)
+++||++|-+++|||||||+|.|- ..+.++- .-||.....+.- -.++.+.|.||+=.+.+
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f 101 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYPHPKFPNVTLWDLPGIGTPNF 101 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE-SS-TTEEEEEE--GGGSS-
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCCCCCCCCCeEEeCCCCCCCCC
Confidence 578999999999999999999862 1222222 245666655554 34799999999965443
No 211
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.92 E-value=0.00017 Score=65.06 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=57.9
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcH-HHHHHh-----cCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCC
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTHP-LMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG 187 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~~-~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g 187 (376)
....+..+|+++.|+|++.+....+. .+..++ .++|+++|+||+|+.+..... ..+...+..++++|++++
T Consensus 114 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 114 TLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCC
Confidence 33456789999999999987655432 122222 257999999999998765443 233344567899999999
Q ss_pred cchhhhhHHHH
Q 017132 188 MGTMKLSRLAK 198 (376)
Q Consensus 188 ~gi~~L~~~l~ 198 (376)
.|+.++.+.+.
T Consensus 191 ~gi~~l~~~L~ 201 (204)
T cd01878 191 EGLDELLEAIE 201 (204)
T ss_pred CCHHHHHHHHH
Confidence 99988876654
No 212
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.92 E-value=1.3e-05 Score=71.77 Aligned_cols=53 Identities=25% Similarity=0.208 Sum_probs=35.1
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeC-C--eEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~-~--~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|+|.... .....+.++.+. ....++ . .+.+.||||.-
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCccCCCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence 48999999999999999998543 233344444332 122232 2 36789999963
No 213
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.92 E-value=0.00011 Score=66.39 Aligned_cols=87 Identities=18% Similarity=0.132 Sum_probs=59.3
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCC-eEEEEEccCCCCHHhHHH-----HHHHHHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRK-RILVLNREDMISMADRNA-----WATYFAK 174 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp-~ilVlNK~DL~~~~~~~~-----w~~~~~~ 174 (376)
-|||. .+.+.+...+..+|+++.|+|+..+......++..++. +.| .++++||+|+....+... ..+++.+
T Consensus 72 tPG~~-~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~ 150 (195)
T cd01884 72 CPGHA-DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSK 150 (195)
T ss_pred CcCHH-HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 48884 56777777889999999999998765544444444432 456 678899999985443222 2233343
Q ss_pred hC-----ceEEEeeCcCCcch
Q 017132 175 QG-----TKVIFSNGQLGMGT 190 (376)
Q Consensus 175 ~g-----~~vi~iSa~~g~gi 190 (376)
.| ..++++|+.+|.++
T Consensus 151 ~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 151 YGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred hcccccCCeEEEeeCccccCC
Confidence 33 46899999998875
No 214
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.91 E-value=4.6e-05 Score=68.36 Aligned_cols=90 Identities=21% Similarity=0.245 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH---hHHHHHHHHHH----
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA---DRNAWATYFAK---- 174 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~---~~~~w~~~~~~---- 174 (376)
||| .++.......+..+|.++.|+|+..........+.... .+.|.++|+||+|+.... ....+.+.+..
T Consensus 73 pG~-~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (194)
T cd01891 73 PGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGAT 151 (194)
T ss_pred CCc-HHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCc
Confidence 555 44556666788999999999999874322222222221 368999999999997432 23344444422
Q ss_pred ---hCceEEEeeCcCCcchhhhh
Q 017132 175 ---QGTKVIFSNGQLGMGTMKLS 194 (376)
Q Consensus 175 ---~g~~vi~iSa~~g~gi~~L~ 194 (376)
.+..++++|+++|.|+.+++
T Consensus 152 ~~~~~~~iv~~Sa~~g~~~~~~~ 174 (194)
T cd01891 152 EEQLDFPVLYASAKNGWASLNLE 174 (194)
T ss_pred cccCccCEEEeehhccccccccc
Confidence 24578899999999886553
No 215
>PLN03127 Elongation factor Tu; Provisional
Probab=97.91 E-value=1.3e-05 Score=81.44 Aligned_cols=58 Identities=24% Similarity=0.415 Sum_probs=43.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhc------ccc---------cccCCCCceeEEEEEEe---CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKR------RMC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~------~~~---------~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i 273 (376)
..++|+++|.+|+|||||+|+|++. ... ..+...|+|.+.....+ +.++.++||||..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 3578999999999999999999732 111 12234899999765555 3478999999984
No 216
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.91 E-value=1.9e-05 Score=68.29 Aligned_cols=54 Identities=22% Similarity=0.285 Sum_probs=34.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i 273 (376)
.+|+++|.||||||||+|++..... ......++.+. ..+.++. .+.+.||||.-
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCchhheEEEEEEECCEEEEEEEEECCCcc
Confidence 4799999999999999999986432 22222232222 2233322 46789999963
No 217
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.89 E-value=2.3e-05 Score=68.29 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=58.7
Q ss_pred HHHHHhhhcCeEEEEEecCCCC-----CCCc------HHHHHH--------hcCCCeEEEEEccCCCCHHhHHHHH--HH
Q 017132 113 ELKDQLKLMDVVIEVRDARIPL-----STTH------PLMDQW--------LGNRKRILVLNREDMISMADRNAWA--TY 171 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~-----~~~~------~~l~~~--------l~~kp~ilVlNK~DL~~~~~~~~w~--~~ 171 (376)
.+...+..+|+|+.|+|+..+. ...+ .++... +.++|.++|+||+|+.+......|. ..
T Consensus 67 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~ 146 (176)
T cd01881 67 QFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVREL 146 (176)
T ss_pred HHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHH
Confidence 4456678899999999998763 1111 111111 2368999999999999877665552 12
Q ss_pred HHHhCceEEEeeCcCCcchhhhhHHHH
Q 017132 172 FAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
....+..++.+|++.+.|+.++.+.+.
T Consensus 147 ~~~~~~~~~~~Sa~~~~gl~~l~~~l~ 173 (176)
T cd01881 147 ALEEGAEVVPISAKTEEGLDELIRAIY 173 (176)
T ss_pred hcCCCCCEEEEehhhhcCHHHHHHHHH
Confidence 222346788999999999988876553
No 218
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.88 E-value=6e-05 Score=65.37 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHH---hcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEee
Q 017132 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQW---LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSN 183 (376)
Q Consensus 109 ~~~k~l~~vidr~dlILeV~DaR~p~~~~~~-~-l~~~---l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iS 183 (376)
+........+..+|+++.|+|...+.+..+. . +..+ ..+.|.++|.||+|+.+.. .....++....+.+++.+|
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~S 139 (161)
T cd04124 61 RFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKHNLPLYYVS 139 (161)
T ss_pred hhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHcCCeEEEEe
Confidence 3344445678999999999998766443221 1 1111 1268999999999996432 2223333334456788999
Q ss_pred CcCCcchhhhhHHHHH
Q 017132 184 GQLGMGTMKLSRLAKA 199 (376)
Q Consensus 184 a~~g~gi~~L~~~l~~ 199 (376)
+++|.|+.++.+.+.+
T Consensus 140 a~~~~gv~~l~~~l~~ 155 (161)
T cd04124 140 AADGTNVVKLFQDAIK 155 (161)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 9999999988766543
No 219
>PRK00007 elongation factor G; Reviewed
Probab=97.88 E-value=1.5e-05 Score=85.42 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=41.8
Q ss_pred ceEEeEeecCCCCcchhhhhhhhccc-----cccc------------CCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~-----~~v~------------~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
..+|+|+|.+|+|||||+|+|+.... ..+. ...|+|.+.....+ +..+.++||||+..
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 34799999999999999999963211 0122 35788888543332 66899999999864
No 220
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.88 E-value=1.2e-05 Score=85.83 Aligned_cols=57 Identities=26% Similarity=0.480 Sum_probs=43.0
Q ss_pred CCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEE--e-----CCeEEEEeCCCC
Q 017132 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-----GKDLEFLDSPGI 272 (376)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~--~-----~~~i~l~DTpG~ 272 (376)
.+++.|+++|++|+|||||+|+|++.. ...+..+|+|.+...+. . +..+.++||||.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~-~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh 305 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQ-IAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH 305 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhcc-CccccCCccccccceEEEEEEecCCceEEEEEECCcH
Confidence 356789999999999999999998654 34455678887643222 1 257899999996
No 221
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.88 E-value=2.5e-05 Score=68.31 Aligned_cols=55 Identities=22% Similarity=0.358 Sum_probs=36.0
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i 273 (376)
.+|++||.+|||||||+|++++.. ......+..+.+. ..+.++. .+.+.||||.-
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 62 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR-FPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCccccceeEEEEEEEEEECCeEEEEEEEeCCChH
Confidence 579999999999999999998643 2222223322222 2233332 57899999963
No 222
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.88 E-value=1.4e-05 Score=73.15 Aligned_cols=60 Identities=28% Similarity=0.433 Sum_probs=38.6
Q ss_pred CCceEEeEeecCCCCcchhhhhhhhccccccc-------CCCCceeE-EE--EEE---eCCeEEEEeCCCCcC
Q 017132 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAA-------PRPGVTRV-LK--WVR---FGKDLEFLDSPGIIP 274 (376)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~-------~~pg~T~~-~~--~~~---~~~~i~l~DTpG~i~ 274 (376)
+...+|++||-.+-|||||+|.|..++....+ +.|-||-= .. .+. +.-++.++|||||=.
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGD 116 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGD 116 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccc
Confidence 35678999999999999999999875533322 22333311 11 111 122578999999953
No 223
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.87 E-value=1e-05 Score=76.62 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.7
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
+|+++|.+|+|||||+|+|...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~ 22 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYA 22 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 3899999999999999999753
No 224
>PRK00049 elongation factor Tu; Reviewed
Probab=97.87 E-value=1.7e-05 Score=79.45 Aligned_cols=58 Identities=24% Similarity=0.389 Sum_probs=43.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcc------cc---------cccCCCCceeEEEEEEe---CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRR------MC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~------~~---------~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i 273 (376)
..++|+++|.+|+|||||+++|++.. .. ..+-..|+|.+...... +..+.++||||..
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 35789999999999999999998621 10 11225799999765555 4568999999973
No 225
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.86 E-value=2.1e-05 Score=68.27 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=35.4
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
+||+++|.+|||||||++++..... ....|.+..+...+.. .-.+.+.||||.-
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~--~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~ 55 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI--VTTIPTIGFNVETVEYKNISFTVWDVGGQD 55 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--cccCCCCCcceEEEEECCEEEEEEECCCCH
Confidence 3699999999999999999964332 2223322222222333 3358899999973
No 226
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.85 E-value=0.00014 Score=62.84 Aligned_cols=106 Identities=17% Similarity=0.101 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHh
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD 164 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~ 164 (376)
+.++.++| + |||. .........+..+|+++.|+|+..+..........++ .++|.++|+||+|+.....
T Consensus 49 ~~~~~iiD---t-----pG~~-~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~ 119 (168)
T cd01887 49 IPGITFID---T-----PGHE-AFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANP 119 (168)
T ss_pred cceEEEEe---C-----CCcH-HHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccH
Confidence 45677777 2 4542 2233333567899999999999875432222222222 3789999999999975321
Q ss_pred --HHHHHHHHHH-------hCceEEEeeCcCCcchhhhhHHHHHhh
Q 017132 165 --RNAWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 165 --~~~w~~~~~~-------~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
.......+.. ....++.+|++.|.|+.+|.+.+.++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 120 ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 1111111111 124688999999999999887776553
No 227
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.85 E-value=2.4e-05 Score=69.69 Aligned_cols=55 Identities=22% Similarity=0.348 Sum_probs=36.2
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
..+|.++|.+|||||||++++.........+..|. +...+.. +-.+.+.||||.-
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~--~~~~~~~~~~~~~l~D~~G~~ 72 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGF--NVETVEYKNLKFTMWDVGGQD 72 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCcccc--ceEEEEECCEEEEEEECCCCH
Confidence 36799999999999999999964332222222222 2222233 3368899999973
No 228
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.85 E-value=4.4e-05 Score=66.15 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=63.7
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~--~~~l~~~l-----~~kp~ilVlNK~DL 159 (376)
+..+.+||- ||| ..........+..+|+++.|+|+..+.... ...+..++ .+.|.++++||+|+
T Consensus 49 ~~~~~l~Dt--------~G~-~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~ 119 (167)
T cd04160 49 NARLKFWDL--------GGQ-ESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDL 119 (167)
T ss_pred CEEEEEEEC--------CCC-hhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccc
Confidence 455666662 554 334444557789999999999997653211 11222222 25799999999998
Q ss_pred CCHH---hHHHHHHHHH----HhCceEEEeeCcCCcchhhhhHHH
Q 017132 160 ISMA---DRNAWATYFA----KQGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 160 ~~~~---~~~~w~~~~~----~~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
.+.. +...+.+... ..+.+++.+|+++|.|++++.+.|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 164 (167)
T cd04160 120 PDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWL 164 (167)
T ss_pred ccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHH
Confidence 7643 2233322211 112468889999999998775544
No 229
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.84 E-value=1.8e-05 Score=75.58 Aligned_cols=58 Identities=24% Similarity=0.407 Sum_probs=34.3
Q ss_pred ceEEeEeecCCCCcchhhhhhhhccccccc-CCC------CceeEEE--EEEe-----CCeEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAA-PRP------GVTRVLK--WVRF-----GKDLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~-~~p------g~T~~~~--~~~~-----~~~i~l~DTpG~i~ 274 (376)
.+++++||-+++|||||||.|.+....... ..+ -.|..+. ...+ .-++.++|||||=.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd 75 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGD 75 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccc
Confidence 468999999999999999999976433221 111 1122222 2222 12578999999953
No 230
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.84 E-value=2.9e-05 Score=67.86 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=34.4
Q ss_pred EEeEeecCCCCcchhhhhhhhccc-ccccCCCCceeEEEEEEeC---CeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pg~T~~~~~~~~~---~~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|+++.... ....+..+.......+..+ -.+.+.||||.-
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCCh
Confidence 699999999999999999985331 1122222222222222222 257899999974
No 231
>PLN03110 Rab GTPase; Provisional
Probab=97.84 E-value=2.9e-05 Score=71.15 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=38.6
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeE--EEEEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~--~~~~~~~~---~i~l~DTpG~i 273 (376)
.++|++||.+|||||||+|+|.+.. ......|....+ ...+.++. .+.|.||||-.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~-~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~ 72 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNE-FCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcH
Confidence 4689999999999999999999754 223333433333 23344433 57889999964
No 232
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.83 E-value=2.7e-05 Score=69.14 Aligned_cols=54 Identities=24% Similarity=0.329 Sum_probs=34.1
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE-EEEEe--CC--eEEEEeCCCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRF--GK--DLEFLDSPGI 272 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~-~~~~~--~~--~i~l~DTpG~ 272 (376)
++|+++|.+|||||||+|+|.+.. ......|.+..+. ..+.. +. .+.+.||||.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~ 59 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGK-FPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQ 59 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCc-CCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCc
Confidence 369999999999999999999654 2222222222221 12222 22 4688999995
No 233
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.83 E-value=0.0001 Score=74.36 Aligned_cols=96 Identities=18% Similarity=0.191 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCC-CCCcHH-HHHH--hcCCCeEEEEEccCCCCHHhHH----HHHHHHHH-
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPL-STTHPL-MDQW--LGNRKRILVLNREDMISMADRN----AWATYFAK- 174 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~-~~~~~~-l~~~--l~~kp~ilVlNK~DL~~~~~~~----~w~~~~~~- 174 (376)
||| .++.+.+..-+..+|+++.|+|++.+. .....+ +..+ ...++.++|+||+|+.+.+... .....+..
T Consensus 93 PG~-~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~ 171 (411)
T PRK04000 93 PGH-ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEFVKGT 171 (411)
T ss_pred CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHHHHHHHHHHHhccc
Confidence 777 455666666677889999999999764 222222 2222 2235789999999998754321 22222222
Q ss_pred --hCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 175 --QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 175 --~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
.+..++++|+++|.|+..|.+.+...
T Consensus 172 ~~~~~~ii~vSA~~g~gI~~L~~~L~~~ 199 (411)
T PRK04000 172 VAENAPIIPVSALHKVNIDALIEAIEEE 199 (411)
T ss_pred cCCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence 13578899999999999988887664
No 234
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.83 E-value=5.3e-05 Score=66.48 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=64.0
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~--~~~l~~~l-----~~kp~ilVlNK~DL 159 (376)
+..+.+|| . ||+. .........+..+|.++.|+|+.++.+.. ...+..++ .+.|+++|.||+|+
T Consensus 57 ~~~l~l~D---~-----~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 127 (173)
T cd04154 57 GYKLNIWD---V-----GGQK-TLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDL 127 (173)
T ss_pred CEEEEEEE---C-----CCCH-HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccc
Confidence 34566777 2 4432 23333446789999999999998763221 12233332 36799999999999
Q ss_pred CCHHhHHHHHHHHH-----HhCceEEEeeCcCCcchhhhhHHH
Q 017132 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 160 ~~~~~~~~w~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
.......+..+.+. ..+..++.+|+++|.|+.++.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 170 (173)
T cd04154 128 PGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWL 170 (173)
T ss_pred ccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHH
Confidence 75432233323331 223578899999999998876543
No 235
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.82 E-value=0.00012 Score=74.73 Aligned_cols=81 Identities=27% Similarity=0.362 Sum_probs=59.7
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcchhhh
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKL 193 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi~~L 193 (376)
..+.+..+|+++.|+|+..+.+..+.++.....++|+++|+||+|+.+..... ...+..++.+|+++|.|+++|
T Consensus 288 ~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 288 SREAIEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred HHHHHHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHHH
Confidence 44678999999999999887655443333223578999999999998654322 223457889999999999988
Q ss_pred hHHHHHh
Q 017132 194 SRLAKAL 200 (376)
Q Consensus 194 ~~~l~~l 200 (376)
.+.+.+.
T Consensus 362 ~~~L~~~ 368 (449)
T PRK05291 362 REAIKEL 368 (449)
T ss_pred HHHHHHH
Confidence 7776543
No 236
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.82 E-value=5.7e-05 Score=65.11 Aligned_cols=84 Identities=12% Similarity=0.045 Sum_probs=54.8
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCCCCHHhHHHHHHHHH-----HhCceEEE
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIF 181 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~--~~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~w~~~~~-----~~g~~vi~ 181 (376)
....+..+|+++.|+|+..+.+.. ...+..++ .++|+++|+||+|+.......+....+. ..+.++++
T Consensus 60 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 139 (158)
T cd04151 60 WRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFK 139 (158)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEE
Confidence 346689999999999987653211 12233222 2689999999999975432222222221 11246889
Q ss_pred eeCcCCcchhhhhHHH
Q 017132 182 SNGQLGMGTMKLSRLA 197 (376)
Q Consensus 182 iSa~~g~gi~~L~~~l 197 (376)
+|+++|.|+.++.+.+
T Consensus 140 ~Sa~~~~gi~~l~~~l 155 (158)
T cd04151 140 TSAIKGEGLDEGMDWL 155 (158)
T ss_pred eeccCCCCHHHHHHHH
Confidence 9999999998886654
No 237
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.82 E-value=2.2e-05 Score=68.10 Aligned_cols=54 Identities=30% Similarity=0.425 Sum_probs=36.4
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i~ 274 (376)
+|+++|.+|||||||++++.... ..+..+.++.+. ....++. .+.++||||...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 59 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQ 59 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCc--cccccCCChHHhceEEEEECCEEEEEEEEECCCCcc
Confidence 48999999999999999998543 234444444222 2223332 367999999864
No 238
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.82 E-value=1.7e-05 Score=83.17 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=27.3
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCC-ceeE
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRV 254 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-~T~~ 254 (376)
++.|+++|.+|+|||||||+|++.. . +...+| +|++
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~-v-~~~e~ggiTq~ 40 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSA-V-AKREAGGITQH 40 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc-c-ccccCCceecc
Confidence 4569999999999999999999764 2 334444 6654
No 239
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.81 E-value=2.8e-05 Score=68.36 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.7
Q ss_pred eEEeEeecCCCCcchhhhhhhhcc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
++|+++|.+|||||||+|++.+..
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~ 28 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNK 28 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 689999999999999999998643
No 240
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.80 E-value=4.2e-05 Score=65.75 Aligned_cols=102 Identities=18% Similarity=0.156 Sum_probs=62.7
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC--CcHHHHHHh-----cCCCeEEEEEccCCC
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMI 160 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~--~~~~l~~~l-----~~kp~ilVlNK~DL~ 160 (376)
..+.+||- ||+ .+........+..+|.++.|+|+.++.+. ....+..++ .+.|.++|+||+|+.
T Consensus 44 ~~l~i~D~--------~G~-~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 44 LSLTVWDV--------GGQ-EKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred eEEEEEEC--------CCC-HhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 45666662 333 33344444678899999999999876421 122233332 367999999999996
Q ss_pred CHHhHHHHHHHHH------HhCceEEEeeCcCCcchhhhhHHHH
Q 017132 161 SMADRNAWATYFA------KQGTKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 161 ~~~~~~~w~~~~~------~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
...........+. ..+..++.+|+++|.|+.++.+.+.
T Consensus 115 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~ 158 (160)
T cd04156 115 GALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158 (160)
T ss_pred cCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHh
Confidence 4221122222221 1123577899999999998866553
No 241
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.80 E-value=2.7e-05 Score=71.15 Aligned_cols=55 Identities=29% Similarity=0.453 Sum_probs=36.7
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEe--CC--eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF--GK--DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~--~~--~i~l~DTpG~i 273 (376)
.+|+++|.+|||||||+|+|++.+.... ..|.++.+.. .+.+ +. .+.+.||||--
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~ 63 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQE 63 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcch
Confidence 5799999999999999999997542222 2243334432 2222 22 46799999953
No 242
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.80 E-value=2.9e-05 Score=70.08 Aligned_cols=53 Identities=21% Similarity=0.339 Sum_probs=35.4
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeC--C--eEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG--K--DLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~--~--~i~l~DTpG~ 272 (376)
+|.++|.+|||||||+|++++.. ......|....+. ..+.++ . .+.+.||||-
T Consensus 2 KivivG~~~vGKTsli~~l~~~~-~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~ 60 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGI-FSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCc
Confidence 68999999999999999999643 2222233333332 233333 2 4689999997
No 243
>PTZ00369 Ras-like protein; Provisional
Probab=97.79 E-value=2.3e-05 Score=70.00 Aligned_cols=56 Identities=23% Similarity=0.264 Sum_probs=34.8
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccc-cccCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
..+|+++|.+|||||||+|++.+.... ...+..+.+.. ..+.++. .+.+.||||.-
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~ 64 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQE 64 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE-EEEEECCEEEEEEEEeCCCCc
Confidence 368999999999999999999865321 11111122111 1222322 35689999974
No 244
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.78 E-value=0.00011 Score=63.31 Aligned_cols=104 Identities=14% Similarity=0.131 Sum_probs=65.5
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh---cCCCeEEEEEccCCCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL---GNRKRILVLNREDMIS 161 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l---~~kp~ilVlNK~DL~~ 161 (376)
..++.+||- ||+ ..........++++|+++.|+|..++.+..+ ..++.+. .+.|.++|.||+|+.+
T Consensus 51 ~~~l~i~Dt--------~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 51 TVELFIFDS--------AGQ-ELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLAD 121 (164)
T ss_pred EEEEEEEEC--------CCH-HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 355677772 343 3344445577899999999999876533211 1111111 2479999999999976
Q ss_pred HHhHH--HHHHHHHHhCceEEEeeCcCCcchhhhhHHHHH
Q 017132 162 MADRN--AWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 162 ~~~~~--~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
..+.. ....+....+..++.+|+++|.|+.++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 161 (164)
T cd04101 122 KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLAR 161 (164)
T ss_pred ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHH
Confidence 53221 122222334567888999999999988766543
No 245
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.78 E-value=8e-05 Score=64.00 Aligned_cols=93 Identities=15% Similarity=0.083 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-------cCCCeEEEEEccCCCCHHhHHHHHHHHH-
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-------GNRKRILVLNREDMISMADRNAWATYFA- 173 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~--~~~l~~~l-------~~kp~ilVlNK~DL~~~~~~~~w~~~~~- 173 (376)
||+. +........+..+|.++.|+|+.++.+.. ...+..++ .+.|.++|+||+|+.+......+...+.
T Consensus 53 ~G~~-~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~ 131 (162)
T cd04157 53 SGQG-KYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGL 131 (162)
T ss_pred CCCH-hhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCC
Confidence 4442 33334446689999999999998764321 12233221 2579999999999976432223322221
Q ss_pred -H---hCceEEEeeCcCCcchhhhhHHH
Q 017132 174 -K---QGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 174 -~---~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
. ....++.+|+++|.|++++.+.+
T Consensus 132 ~~~~~~~~~~~~~Sa~~g~gv~~~~~~l 159 (162)
T cd04157 132 ENIKDKPWHIFASNALTGEGLDEGVQWL 159 (162)
T ss_pred ccccCceEEEEEeeCCCCCchHHHHHHH
Confidence 1 11246779999999998886654
No 246
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.78 E-value=2.3e-05 Score=73.12 Aligned_cols=56 Identities=23% Similarity=0.399 Sum_probs=36.5
Q ss_pred EEeEeecCCCCcchhhhhhhhccccc-----cc------------CCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCP-----AA------------PRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~-----v~------------~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
+|+++|.+|+|||||+|+|+...... +. ..-|+|.+.....+ +.++.++||||...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~ 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc
Confidence 38999999999999999998642211 11 11233443332222 45789999999963
No 247
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.78 E-value=2.5e-05 Score=83.72 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=40.9
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccc-----cccC------------CCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMC-----PAAP------------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~-----~v~~------------~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
.+|+|+|.+|+|||||+|+|...... .+.+ ..|+|.+.....+ +..+.++||||...
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 47999999999999999999743211 1111 4678877543332 55799999999964
No 248
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.78 E-value=0.00028 Score=62.88 Aligned_cols=85 Identities=19% Similarity=0.224 Sum_probs=60.4
Q ss_pred hhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHH----HHHHHhCceEEEeeCcCCcchh
Q 017132 118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWA----TYFAKQGTKVIFSNGQLGMGTM 191 (376)
Q Consensus 118 idr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~----~~~~~~g~~vi~iSa~~g~gi~ 191 (376)
.+.+++++.|+|+..+......++..++. +.|+++++||+|+.+..+.+... ..+......++++|++.+.|+.
T Consensus 104 ~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~ 183 (196)
T PRK00454 104 RENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGID 183 (196)
T ss_pred CccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHH
Confidence 35667899999988776655545555443 57899999999998765443322 3333324678899999999999
Q ss_pred hhhHHHHHhhh
Q 017132 192 KLSRLAKALAS 202 (376)
Q Consensus 192 ~L~~~l~~l~~ 202 (376)
++.+.+.++.+
T Consensus 184 ~l~~~i~~~~~ 194 (196)
T PRK00454 184 ELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHHhc
Confidence 99888776543
No 249
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.77 E-value=2.4e-05 Score=83.16 Aligned_cols=26 Identities=38% Similarity=0.395 Sum_probs=22.7
Q ss_pred ceEEeEeecCCCCcchhhhhhhhccc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRM 242 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~ 242 (376)
.++|+++|.+|+|||||+|+|+....
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~ 49 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSK 49 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhC
Confidence 46899999999999999999986543
No 250
>PRK12736 elongation factor Tu; Reviewed
Probab=97.77 E-value=3.1e-05 Score=77.64 Aligned_cols=57 Identities=25% Similarity=0.407 Sum_probs=42.7
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcc------cc---------cccCCCCceeEEEEEEe---CCeEEEEeCCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRR------MC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGI 272 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~------~~---------~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~ 272 (376)
..++|+++|.+|+|||||+++|++.. .. ..+-..|+|.+...... +..+.++||||.
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh 85 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH 85 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH
Confidence 35789999999999999999998621 01 11126799999765555 457899999995
No 251
>PLN03126 Elongation factor Tu; Provisional
Probab=97.76 E-value=3.8e-05 Score=78.68 Aligned_cols=58 Identities=24% Similarity=0.369 Sum_probs=42.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccc---------------cccCCCCceeEEEEEEe---CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~---------------~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i 273 (376)
..++|+++|.+|+|||||+|+|++.... ..+...|+|.+.....+ +..+.++||||..
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA 155 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH
Confidence 4578999999999999999999852111 12334688888655444 5578999999963
No 252
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.76 E-value=0.0001 Score=62.49 Aligned_cols=94 Identities=7% Similarity=0.005 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCCCCHHhHHHHHHHHH---
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA--- 173 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~w~~~~~--- 173 (376)
||+ .+........+..+|.++.|+|+.++..... ..+..+. .++|+++|+||+|+.+......+...+.
T Consensus 52 ~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 130 (159)
T cd04159 52 GGQ-PRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKS 130 (159)
T ss_pred CCC-HhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCccc
Confidence 454 3344455577899999999999986532211 1222222 2579999999999986544333333321
Q ss_pred --HhCceEEEeeCcCCcchhhhhHHHH
Q 017132 174 --KQGTKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 174 --~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
.....++.+|+++|.|+.++.+.+.
T Consensus 131 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 157 (159)
T cd04159 131 ITDREVSCYSISCKEKTNIDIVLDWLI 157 (159)
T ss_pred ccCCceEEEEEEeccCCChHHHHHHHh
Confidence 1124678899999999988876654
No 253
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.75 E-value=1.3e-05 Score=69.88 Aligned_cols=77 Identities=22% Similarity=0.142 Sum_probs=54.1
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHhHHHHHHH-HHHhCceEEEeeCcCCcchhhhhH
Q 017132 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATY-FAKQGTKVIFSNGQLGMGTMKLSR 195 (376)
Q Consensus 119 dr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~w~~~-~~~~g~~vi~iSa~~g~gi~~L~~ 195 (376)
++.|+|+.|+||... +++..+...+ .++|.++|+||+|++.+....--.+. -+..|.+++++||+++.|+++|++
T Consensus 77 ~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~ 154 (156)
T PF02421_consen 77 EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKD 154 (156)
T ss_dssp TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHH
T ss_pred cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHh
Confidence 789999999999863 3344443332 38999999999999876532111122 234578999999999999998876
Q ss_pred HH
Q 017132 196 LA 197 (376)
Q Consensus 196 ~l 197 (376)
.+
T Consensus 155 ~I 156 (156)
T PF02421_consen 155 AI 156 (156)
T ss_dssp HH
T ss_pred hC
Confidence 53
No 254
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.75 E-value=3.5e-05 Score=80.86 Aligned_cols=37 Identities=24% Similarity=0.387 Sum_probs=27.3
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCC-CceeE
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRV 254 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p-g~T~~ 254 (376)
+++.|+++|.+|+|||||+|+|++.. .++..+ +.|.+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~--v~~~~~g~itq~ 42 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTA--VAAKEAGGITQH 42 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc--cccCCCCceEEe
Confidence 45679999999999999999998653 233444 34444
No 255
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.75 E-value=0.00019 Score=63.48 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=52.6
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHh----HHHHHHHHHHhC--ceEEEeeCcCCcch
Q 017132 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMAD----RNAWATYFAKQG--TKVIFSNGQLGMGT 190 (376)
Q Consensus 119 dr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~----~~~w~~~~~~~g--~~vi~iSa~~g~gi 190 (376)
+.+|.++.|+|++.+....+.++..++. ++|+++|+||+|+.+... ...+.+.+...+ ..++++|+++|.|+
T Consensus 99 ~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi 178 (179)
T TIGR03598 99 ENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGI 178 (179)
T ss_pred hhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCC
Confidence 4568999999999877666655544443 689999999999987543 334445555444 37899999999886
No 256
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.75 E-value=4.1e-05 Score=67.35 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=35.6
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeC---CeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~---~~i~l~DTpG~i 273 (376)
+|++||.+|||||||+|++.+.. ....-.|.+..+.. .+.++ ..+.+.||||.-
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDV-FDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQE 60 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChH
Confidence 58999999999999999999653 22222233323332 22222 257899999974
No 257
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.74 E-value=4.6e-05 Score=67.28 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=37.2
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
.++|.++|.+|||||||++++..... ....|.+..+...... ...+.+.||||.-
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~ 68 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES--VTTIPTIGFNVETVTYKNISFTVWDVGGQD 68 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--CCcCCccccceEEEEECCEEEEEEECCCCh
Confidence 46899999999999999999964332 2333433333333333 3367899999974
No 258
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.74 E-value=4e-05 Score=76.77 Aligned_cols=57 Identities=23% Similarity=0.403 Sum_probs=42.7
Q ss_pred ceEEeEeecCCCCcchhhhhhhhc------ccc---------cccCCCCceeEEEEEEe---CCeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKR------RMC---------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~------~~~---------~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i 273 (376)
.++|+++|..|+|||||+++|++. ... ..+-..|+|.+...+.+ +..+.++||||.-
T Consensus 12 ~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~ 86 (394)
T TIGR00485 12 HVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (394)
T ss_pred eEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH
Confidence 478999999999999999999842 111 11224799999766655 3468999999974
No 259
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.74 E-value=0.00015 Score=65.95 Aligned_cols=88 Identities=19% Similarity=0.284 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--C-CCeEEEEEccCCCCHHh--H----HHHHHHHHH
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISMAD--R----NAWATYFAK 174 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~-kp~ilVlNK~DL~~~~~--~----~~w~~~~~~ 174 (376)
||| .++...+...+..+|+++.|+|+..+..........++. + ++.++|+||+|+..... . ......+..
T Consensus 85 pG~-~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~ 163 (208)
T cd04166 85 PGH-EQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAK 163 (208)
T ss_pred CcH-HHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHH
Confidence 776 345555666789999999999998765443333323222 3 45677899999975211 1 122222333
Q ss_pred hC---ceEEEeeCcCCcchhh
Q 017132 175 QG---TKVIFSNGQLGMGTMK 192 (376)
Q Consensus 175 ~g---~~vi~iSa~~g~gi~~ 192 (376)
.+ ..++++|+++|.|+.+
T Consensus 164 ~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 164 LGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred cCCCCceEEEEeCCCCCCCcc
Confidence 34 3488999999988764
No 260
>PLN03108 Rab family protein; Provisional
Probab=97.74 E-value=5.8e-05 Score=68.84 Aligned_cols=57 Identities=25% Similarity=0.358 Sum_probs=37.4
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccc-cCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
..+|+++|.+|||||||+|+|++...... .+..+.+.....+.++. .+.+.||+|-.
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~ 66 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 36899999999999999999996542211 12223333333334432 46799999964
No 261
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.73 E-value=0.00015 Score=62.95 Aligned_cols=96 Identities=10% Similarity=0.005 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc-----CCCeEEEEEccCCCCHH--hHHHHHHH
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-----NRKRILVLNREDMISMA--DRNAWATY 171 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l~-----~kp~ilVlNK~DL~~~~--~~~~w~~~ 171 (376)
||+ ..........++++|.++.++|+.++.+..+. .+..... +.|.++|.||+|+..+. .......+
T Consensus 57 ~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~ 135 (172)
T cd01862 57 AGQ-ERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQW 135 (172)
T ss_pred CCh-HHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHH
Confidence 444 23444445678999999999999876532221 1111122 57999999999998321 11222233
Q ss_pred HHHhC-ceEEEeeCcCCcchhhhhHHHHHh
Q 017132 172 FAKQG-TKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 172 ~~~~g-~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
.+..+ ..++.+|+++|.|+.++.+.+.+.
T Consensus 136 ~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 165 (172)
T cd01862 136 CQSNGNIPYFETSAKEAINVEQAFETIARK 165 (172)
T ss_pred HHHcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 34444 578899999999998887665543
No 262
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.73 E-value=3.9e-05 Score=69.13 Aligned_cols=53 Identities=26% Similarity=0.397 Sum_probs=35.3
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|++++... ......++.+.. .+.++. .+.++||||..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~ 58 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSY 58 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEECCEEEEEEEEECCCch
Confidence 489999999999999999986542 222333332221 223322 57799999975
No 263
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.72 E-value=0.00018 Score=61.75 Aligned_cols=93 Identities=14% Similarity=0.124 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccCCCCHHh--HHHHHHHHH
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWATYFA 173 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~w~~~~~ 173 (376)
||+ .+........+..+|+++.|||.+.+.+... +..|+ ...|+++|.||+|+.+... .+...+...
T Consensus 57 ~G~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~--~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~ 133 (164)
T smart00175 57 AGQ-ERFRSITSSYYRGAVGALLVYDITNRESFEN--LKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAE 133 (164)
T ss_pred CCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHH
Confidence 443 3444555567899999999999987644322 22222 2579999999999876321 122223334
Q ss_pred HhCceEEEeeCcCCcchhhhhHHHHH
Q 017132 174 KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 174 ~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
+.+..++.+|++.|.|+.++.+.+.+
T Consensus 134 ~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 134 EHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred HcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 45677899999999999988766544
No 264
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.71 E-value=5.1e-05 Score=66.26 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=33.3
Q ss_pred EeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCc
Q 017132 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i 273 (376)
|+++|.+|||||||+|++.+.. ......| ++.+. ..+.++. .+.+.||||--
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 57 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA-FPEDYVP-TVFENYSADVEVDGKPVELGLWDTAGQE 57 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC-CCCCCCC-cEEeeeeEEEEECCEEEEEEEEECCCCc
Confidence 5799999999999999999754 2222222 22221 1223322 47899999964
No 265
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.71 E-value=4e-05 Score=67.04 Aligned_cols=52 Identities=21% Similarity=0.210 Sum_probs=33.6
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeC-C--eEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~-~--~i~l~DTpG~ 272 (376)
+|+++|.+|||||||++++.+..- ......++.+. ..+.++ . .+.+.||||.
T Consensus 3 ki~iiG~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (175)
T cd01870 3 KLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQ 59 (175)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCCCCccccceEEEEEECCEEEEEEEEeCCCc
Confidence 699999999999999999996432 22222222121 122332 2 4689999996
No 266
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.71 E-value=4.3e-05 Score=70.35 Aligned_cols=55 Identities=25% Similarity=0.227 Sum_probs=34.5
Q ss_pred EEeEeecCCCCcchhhhhhhhcccc-cccCCCC-ceeEEEEEEe---CCeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPG-VTRVLKWVRF---GKDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pg-~T~~~~~~~~---~~~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|++++.... ...+..+ .+.....+.+ ...+.++||||.-
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE 61 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc
Confidence 6999999999999999999754321 1111111 1112222333 2357899999985
No 267
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.70 E-value=0.00028 Score=71.05 Aligned_cols=88 Identities=18% Similarity=0.305 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHH---HHHhcCCCeEEEEEccCCCCHHh--H----HHHHHHHHH
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM---DQWLGNRKRILVLNREDMISMAD--R----NAWATYFAK 174 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l---~~~l~~kp~ilVlNK~DL~~~~~--~----~~w~~~~~~ 174 (376)
||| .++.+.+...+..+|+++.|+|+..+......+. ...++.++.++++||+|+.+... . .....++.+
T Consensus 88 PGh-~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~ 166 (406)
T TIGR02034 88 PGH-EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQ 166 (406)
T ss_pred CCH-HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHHHHHHH
Confidence 887 4566666677899999999999998765544332 23334456788999999985321 1 122222333
Q ss_pred hC---ceEEEeeCcCCcchhh
Q 017132 175 QG---TKVIFSNGQLGMGTMK 192 (376)
Q Consensus 175 ~g---~~vi~iSa~~g~gi~~ 192 (376)
.+ ..++++|+.+|.|+..
T Consensus 167 ~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 167 LGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred cCCCCccEEEeecccCCCCcc
Confidence 34 3588999999999875
No 268
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.70 E-value=0.00014 Score=62.96 Aligned_cols=79 Identities=18% Similarity=0.138 Sum_probs=52.6
Q ss_pred hcCeEEEEEecCCCCCC-CcH--HHHHHh----cCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcchhh
Q 017132 120 LMDVVIEVRDARIPLST-THP--LMDQWL----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK 192 (376)
Q Consensus 120 r~dlILeV~DaR~p~~~-~~~--~l~~~l----~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi~~ 192 (376)
.+|+++.|+|+.++.+. ... ++...+ .+.|+++|+||+|+..........++....+..++.+|+++|.|+.+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE 158 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence 36899999999876442 111 111122 26899999999999876554332222222346788999999999998
Q ss_pred hhHHHH
Q 017132 193 LSRLAK 198 (376)
Q Consensus 193 L~~~l~ 198 (376)
+.+.+.
T Consensus 159 l~~~l~ 164 (168)
T cd01897 159 VKNKAC 164 (168)
T ss_pred HHHHHH
Confidence 876654
No 269
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.69 E-value=0.0001 Score=63.21 Aligned_cols=102 Identities=12% Similarity=0.069 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL 159 (376)
+.++.+|| .||+. +........+..+|+++.|+|+..+.+... ..+..+. ...|+++|.||+|+
T Consensus 42 ~~~~~i~D--------~~G~~-~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 112 (158)
T cd00878 42 NVSFTVWD--------VGGQD-KIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDL 112 (158)
T ss_pred CEEEEEEE--------CCCCh-hhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCC
Confidence 45566776 24443 233334467899999999999987632211 2222222 25799999999999
Q ss_pred CCHHhHHHHHHHHHH-----hCceEEEeeCcCCcchhhhhHHH
Q 017132 160 ISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 160 ~~~~~~~~w~~~~~~-----~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
.......+..+.+.. ....++.+|++.|.|+.++.+.|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 113 PGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred ccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 864422222222221 22468889999999998876554
No 270
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.69 E-value=5.2e-05 Score=62.02 Aligned_cols=56 Identities=25% Similarity=0.301 Sum_probs=36.0
Q ss_pred EEeEeecCCCCcchhhhhhhhcccc---cccCCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~---~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
||.++|-+||||||||++|.+.... ......+.|........ ...+.+.|++|...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~ 62 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEE 62 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHC
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccce
Confidence 5899999999999999999976543 12233344443323222 12367899999954
No 271
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.69 E-value=0.00027 Score=58.60 Aligned_cols=92 Identities=22% Similarity=0.181 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhC-ceEEEeeCcC
Q 017132 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQL 186 (376)
Q Consensus 108 ~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g-~~vi~iSa~~ 186 (376)
+.....+.-....+|+|+.|..+.+|.+...+.+..... +|+|-|++|+||+....+..-..++.+.| .+++.+|+..
T Consensus 52 ~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~~-k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d 130 (148)
T COG4917 52 PRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIGV-KKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVD 130 (148)
T ss_pred hHHHHHHHHHhhccceeeeeecccCccccCCcccccccc-cceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccC
Confidence 445555666788999999999999998888887765544 55999999999997776666556677777 4677789999
Q ss_pred CcchhhhhHHHHHh
Q 017132 187 GMGTMKLSRLAKAL 200 (376)
Q Consensus 187 g~gi~~L~~~l~~l 200 (376)
..|+.+|...|...
T Consensus 131 ~~gv~~l~~~L~~~ 144 (148)
T COG4917 131 NQGVEELVDYLASL 144 (148)
T ss_pred cccHHHHHHHHHhh
Confidence 99999998887654
No 272
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.68 E-value=0.00019 Score=65.95 Aligned_cols=88 Identities=22% Similarity=0.244 Sum_probs=55.1
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCC----CCc---HHHHHH---hcCCCeEEEEEccCCCC----HHhHHH-
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS----TTH---PLMDQW---LGNRKRILVLNREDMIS----MADRNA- 167 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~----~~~---~~l~~~---l~~kp~ilVlNK~DL~~----~~~~~~- 167 (376)
.||| .++...+...+..+|+++.|+|+..+.. ... .+...+ ...+|+++++||+|+.. ......
T Consensus 84 tpG~-~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i 162 (219)
T cd01883 84 APGH-RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYDEI 162 (219)
T ss_pred CCCh-HHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHHHH
Confidence 3777 4455666667888999999999987521 111 111111 22467888999999983 222222
Q ss_pred ---HHHHHHHhC-----ceEEEeeCcCCcchh
Q 017132 168 ---WATYFAKQG-----TKVIFSNGQLGMGTM 191 (376)
Q Consensus 168 ---w~~~~~~~g-----~~vi~iSa~~g~gi~ 191 (376)
....+...+ ..++++||.+|.|+.
T Consensus 163 ~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 163 KKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 222344433 458999999999875
No 273
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.68 E-value=0.00016 Score=72.84 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=57.7
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCC-----CCc---HHHHHH---hcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceE
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLS-----TTH---PLMDQW---LGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~-----~~~---~~l~~~---l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~v 179 (376)
...+.+.+++++++++|+|+..... ... .++..+ +..+|.++|+||+||....+ .+.......+..+
T Consensus 227 g~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e--~l~~l~~~l~~~i 304 (424)
T PRK12297 227 GHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEE--NLEEFKEKLGPKV 304 (424)
T ss_pred HHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHH--HHHHHHHHhCCcE
Confidence 3445567899999999999864321 111 112221 13689999999999854321 2222222334678
Q ss_pred EEeeCcCCcchhhhhHHHHHhh
Q 017132 180 IFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~ 201 (376)
+++|++++.|+.+|.+.+.++.
T Consensus 305 ~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 305 FPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 8999999999999887776544
No 274
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.67 E-value=5.3e-05 Score=70.04 Aligned_cols=57 Identities=28% Similarity=0.447 Sum_probs=39.0
Q ss_pred CCceEEeEeecCCCCcchhhhhhhhc-ccccccCCCCceeEEEEEEeCCeEEEEeCCCCc
Q 017132 215 PRAVRAGIVGYPNVGKSSLINRLLKR-RMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (376)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~-~~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~i 273 (376)
..+..|+++|.||+|||||+|+|.+. ....+....|+. .. ....+..+.++||||.+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~~ 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPNDI 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCchH
Confidence 34567999999999999999999875 222334444531 11 11235678999999965
No 275
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.67 E-value=0.00016 Score=64.30 Aligned_cols=104 Identities=13% Similarity=0.088 Sum_probs=61.7
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~--~~~l~~~l-----~~kp~ilVlNK~DL 159 (376)
+..+.+|| + ||+ .+........++.+|+++.|+|+.++.... ...+..+. .++|+++|+||+|+
T Consensus 51 ~~~l~l~D---t-----~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~ 121 (183)
T cd04152 51 GITFHFWD---V-----GGQ-EKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDL 121 (183)
T ss_pred ceEEEEEE---C-----CCc-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCc
Confidence 45566666 2 343 333333445688999999999987753211 11222221 25899999999998
Q ss_pred CCHHhHHHHHHHHH--Hh----CceEEEeeCcCCcchhhhhHHHHH
Q 017132 160 ISMADRNAWATYFA--KQ----GTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 160 ~~~~~~~~w~~~~~--~~----g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
............+. .. +..++++|++.|.|+.++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~ 167 (183)
T cd04152 122 PNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYE 167 (183)
T ss_pred cccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHH
Confidence 64221122212111 11 134678999999999888665543
No 276
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.66 E-value=5.6e-05 Score=69.72 Aligned_cols=53 Identities=25% Similarity=0.389 Sum_probs=34.7
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|++...+-.. ..|-+..+...... .-.+.+.||||.-
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~--~~~Tig~~~~~~~~~~~~l~iwDt~G~e 55 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKD--TVSTVGGAFYLKQWGPYNISIWDTAGRE 55 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC--CCCccceEEEEEEeeEEEEEEEeCCCcc
Confidence 68999999999999999998654221 22211122222222 2357899999974
No 277
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.66 E-value=8.1e-05 Score=64.60 Aligned_cols=54 Identities=19% Similarity=0.289 Sum_probs=35.3
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i 273 (376)
+|+++|.+|||||||++++.+.. ......|....+. ..+.++. .+.+.||+|--
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNE-FHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCC-CCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 68999999999999999998654 2222233333232 2333332 46789999963
No 278
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.66 E-value=4.8e-05 Score=72.19 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.1
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
+|+++|.+|+|||||+|+|+..
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~ 25 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLF 25 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 5999999999999999999853
No 279
>PRK12739 elongation factor G; Reviewed
Probab=97.65 E-value=4.1e-05 Score=82.09 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=41.2
Q ss_pred ceEEeEeecCCCCcchhhhhhhhccc-----cccc------------CCCCceeEEEEEEe---CCeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRM-----CPAA------------PRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~-----~~v~------------~~pg~T~~~~~~~~---~~~i~l~DTpG~i 273 (376)
..+|+|+|.+|+|||||+|+|+.... ..+. ...|+|.+.....+ +..+.++||||+.
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 35799999999999999999974211 1122 25688888543333 5679999999985
No 280
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.64 E-value=6.3e-05 Score=79.43 Aligned_cols=54 Identities=26% Similarity=0.452 Sum_probs=41.3
Q ss_pred EEeEeecCCCCcchhhhhhhhcc--cccccCCCCceeEEEEEEe----CCeEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~--~~~v~~~pg~T~~~~~~~~----~~~i~l~DTpG~ 272 (376)
.|+++|.+|+|||||+|+|++.+ ....+...|.|.+.....+ +..+.++||||.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGh 61 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGH 61 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCH
Confidence 48999999999999999999743 2233455799988754333 346789999996
No 281
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.64 E-value=8.6e-05 Score=66.08 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=36.9
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 272 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~ 272 (376)
..+|.++|.+|||||||++++...... ...|.+..+...+.. +-.+.+.||||-
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~--~~~pt~g~~~~~~~~~~~~~~i~D~~Gq 71 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc--cccCCcceeEEEEEECCEEEEEEECCCC
Confidence 368999999999999999999854322 223333333333333 346889999995
No 282
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.64 E-value=7e-05 Score=68.06 Aligned_cols=53 Identities=19% Similarity=0.355 Sum_probs=35.8
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-----CCeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-----GKDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-----~~~i~l~DTpG~i 273 (376)
+|.++|.+|||||||+|.|...+. ....+.++-....... +..+.|+||||..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~--~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~ 59 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKY--RSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHP 59 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC--CCccCcEeecceEEEeecCCCCceEEEEECCCCH
Confidence 589999999999999999986532 2222222222222222 4568999999975
No 283
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=97.63 E-value=0.00026 Score=61.36 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccCCCCHHhH--HHHHHHHH
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMADR--NAWATYFA 173 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~~--~~w~~~~~ 173 (376)
||+. +........+..+|.++.|+|+.++.+..+ +..++ .+.|.++|.||+|+...... +.-..+..
T Consensus 59 ~G~~-~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~--l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~ 135 (166)
T cd01869 59 AGQE-RFRTITSSYYRGAHGIIIVYDVTDQESFNN--VKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFAD 135 (166)
T ss_pred CCcH-hHHHHHHHHhCcCCEEEEEEECcCHHHHHh--HHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHH
Confidence 4543 344444567899999999999977543222 22221 24789999999998654321 11112223
Q ss_pred HhCceEEEeeCcCCcchhhhhHHHH
Q 017132 174 KQGTKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 174 ~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
..+.+++.+|++.|.|+.++.+.+.
T Consensus 136 ~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 136 ELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred HcCCeEEEEECCCCcCHHHHHHHHH
Confidence 4466789999999999988866553
No 284
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.63 E-value=0.00034 Score=73.76 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh-cCCCeEEEEEccCCCCHHh---HHHHHHHHHHhCce
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-GNRKRILVLNREDMISMAD---RNAWATYFAKQGTK 178 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~-l~~~l-~~kp~ilVlNK~DL~~~~~---~~~w~~~~~~~g~~ 178 (376)
||| ..+..++...+..+|.++.|+|+..+....... +..+. .+.|+++|+||+|+..... ...+.+.+.-....
T Consensus 82 PGh-~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~ 160 (600)
T PRK05433 82 PGH-VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASD 160 (600)
T ss_pred CCc-HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcce
Confidence 777 445666777899999999999998765433222 22222 3689999999999864321 12222221111124
Q ss_pred EEEeeCcCCcchhhhhHHHHHhh
Q 017132 179 VIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
++++|+++|.|+.+|.+.+.+..
T Consensus 161 vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 161 AVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred EEEEecCCCCCHHHHHHHHHHhC
Confidence 88999999999999887775543
No 285
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.62 E-value=0.00022 Score=61.31 Aligned_cols=90 Identities=14% Similarity=-0.025 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceE
Q 017132 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKV 179 (376)
Q Consensus 109 ~~~k~l~~vidr~dlILeV~DaR~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~v 179 (376)
+........+..+|.++.|+|..++.+.... .+..+. .+.|.++|.||+|+.+... ...-.+.....+..+
T Consensus 62 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04145 62 EFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPY 141 (164)
T ss_pred chhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcE
Confidence 3444445678899999999999875432111 111111 2569999999999975432 111122333446678
Q ss_pred EEeeCcCCcchhhhhHHHH
Q 017132 180 IFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~ 198 (376)
+.+|++.|.|+.++.+.+.
T Consensus 142 ~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 142 IETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EEeeCCCCCCHHHHHHHHH
Confidence 8999999999998865543
No 286
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.62 E-value=4.5e-05 Score=63.23 Aligned_cols=52 Identities=27% Similarity=0.314 Sum_probs=32.8
Q ss_pred EeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-----CCeEEEEeCCCCcC
Q 017132 222 IVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-----GKDLEFLDSPGIIP 274 (376)
Q Consensus 222 lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-----~~~i~l~DTpG~i~ 274 (376)
++|.+|+|||||+|+|.+.... ......+..+...... +..+.++||||...
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 57 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQER 57 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCEEEEEEEEecCChHH
Confidence 5899999999999999975531 1111111122222221 34689999999764
No 287
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.62 E-value=0.00051 Score=61.39 Aligned_cols=97 Identities=10% Similarity=0.068 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc-----HHHHHHh-cCCCeEEEEEccCCCCHHh--HHHHHHHHHHh
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWL-GNRKRILVLNREDMISMAD--RNAWATYFAKQ 175 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~-----~~l~~~l-~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~ 175 (376)
||+ .+........+..+|+++.|||+..+.+..+ .++.... ...|+++|.||+|+..... ...........
T Consensus 58 ~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~ 136 (191)
T cd04112 58 AGQ-ERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEY 136 (191)
T ss_pred CCc-HHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHc
Confidence 443 3333444466888999999999976533211 1111111 2568999999999974321 12222333344
Q ss_pred CceEEEeeCcCCcchhhhhHHHHHhh
Q 017132 176 GTKVIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 176 g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
+..++.+|++.|.|+.++.+.+.+..
T Consensus 137 ~~~~~e~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 137 GVPFMETSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 66789999999999999877765443
No 288
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.62 E-value=0.00078 Score=60.56 Aligned_cols=94 Identities=22% Similarity=0.184 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHh-hh--cCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHHH-hC----
Q 017132 107 IAKTEKELKDQL-KL--MDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK-QG---- 176 (376)
Q Consensus 107 ~~~~~k~l~~vi-dr--~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~~-~g---- 176 (376)
..+..+.+.+.+ .| -..++.++|+|.+....+.++.+++. +.|.++|+||+|.++..+...-.....+ .+
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~ 169 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPP 169 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCC
Confidence 334445555665 22 45667788999999998888888875 7899999999999998765433333332 11
Q ss_pred c--eEEEeeCcCCcchhhhhHHHHHh
Q 017132 177 T--KVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 177 ~--~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
. .++++|+..+.|+++|.+.+.+.
T Consensus 170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~ 195 (200)
T COG0218 170 DDQWVVLFSSLKKKGIDELKAKILEW 195 (200)
T ss_pred ccceEEEEecccccCHHHHHHHHHHH
Confidence 2 27889999999999888777654
No 289
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.62 E-value=0.00015 Score=62.90 Aligned_cols=102 Identities=11% Similarity=0.106 Sum_probs=61.1
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC--CcHHHHHHhc-----CCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~--~~~~l~~~l~-----~kp~ilVlNK~DL 159 (376)
+..+.+||- ||+ .+........+..+|.++.|+|+..+.+- ...++..++. ..|++++.||+|+
T Consensus 43 ~~~~~l~D~--------~G~-~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 113 (159)
T cd04150 43 NISFTVWDV--------GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDL 113 (159)
T ss_pred CEEEEEEEC--------CCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCC
Confidence 445666662 343 33444445678999999999998764321 1222333322 4799999999999
Q ss_pred CCHHhHHHHHHHHH-----HhCceEEEeeCcCCcchhhhhHHH
Q 017132 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 160 ~~~~~~~~w~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
.+.....+..+.+. .....++.+||++|.|+.++.+.|
T Consensus 114 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l 156 (159)
T cd04150 114 PNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWL 156 (159)
T ss_pred CCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHH
Confidence 64322222222221 112345678999999998876544
No 290
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.61 E-value=4.1e-05 Score=65.51 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=32.3
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeCCeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~i 273 (376)
||++||-+.+|||||+++|.+... ....|..+.. ..+ .+||||=.
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~~---~~~--~IDTPGEy 47 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIEY---YDN--TIDTPGEY 47 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeEe---ccc--EEECChhh
Confidence 599999999999999999997542 2234444333 333 49999964
No 291
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=97.61 E-value=0.00028 Score=60.67 Aligned_cols=101 Identities=15% Similarity=0.167 Sum_probs=65.9
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH-------hcCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-------LGNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~-------l~~kp~ilVlNK~DL 159 (376)
..++.+|| .||+ .+........+..+|.++.|+|+.++.+.. .+..+ ..+.|.++|.||+|+
T Consensus 50 ~~~~~i~D--------~~G~-~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~--~l~~~~~~~~~~~~~~p~iiv~nK~Dl 118 (162)
T cd04106 50 DVRLMLWD--------TAGQ-EEFDAITKAYYRGAQACILVFSTTDRESFE--AIESWKEKVEAECGDIPMVLVQTKIDL 118 (162)
T ss_pred EEEEEEee--------CCch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEEChhc
Confidence 34566666 2453 334444456789999999999987654322 12222 236899999999999
Q ss_pred CCHHhH--HHHHHHHHHhCceEEEeeCcCCcchhhhhHHHH
Q 017132 160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 160 ~~~~~~--~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
.+.... ..........+.+++.+|++.|.|+.++.+.+.
T Consensus 119 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 119 LDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred ccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 764321 122233344567888999999999988766553
No 292
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.60 E-value=8.6e-05 Score=65.13 Aligned_cols=54 Identities=22% Similarity=0.136 Sum_probs=37.6
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
++++++|.+|||||||++++.+.. ...+.+.|+.+.. .+.++. .+.+.||||.-
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 59 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG--YPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQD 59 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCceeeeeeEEEEECCEEEEEEEEECCCCh
Confidence 368999999999999999998643 3444555554432 222332 46789999974
No 293
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.60 E-value=0.00013 Score=64.30 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=34.5
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeE-E-EEEEeCC---eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-L-KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~-~-~~~~~~~---~i~l~DTpG~i 273 (376)
.+|+++|.+|||||||++++.+.+- .....-++.+ . ..+.++. .+.+.||||..
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 61 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF--PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQA 61 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CCCcCCcccceEEEEEEECCEEEEEEEEeCCCch
Confidence 5799999999999999999986432 1111112111 1 1223322 46789999974
No 294
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.59 E-value=0.0008 Score=57.44 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=58.8
Q ss_pred hhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHH------HhCceEEEeeCcCCcc
Q 017132 118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA------KQGTKVIFSNGQLGMG 189 (376)
Q Consensus 118 idr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~------~~g~~vi~iSa~~g~g 189 (376)
-+..++++.|+|...+......++.+++. +.|.++|+||+|+.+..........+. .....++++|++.+.|
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~ 158 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQG 158 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCC
Confidence 35678899999998766555555555554 578999999999987665443333222 1225788999999999
Q ss_pred hhhhhHHHHHh
Q 017132 190 TMKLSRLAKAL 200 (376)
Q Consensus 190 i~~L~~~l~~l 200 (376)
+.++.+.+.++
T Consensus 159 ~~~l~~~l~~~ 169 (170)
T cd01876 159 IDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHHh
Confidence 99988877653
No 295
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.59 E-value=0.00013 Score=67.01 Aligned_cols=58 Identities=21% Similarity=0.152 Sum_probs=39.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcc-cccccCCCCceeEEEEEEeC---CeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pg~T~~~~~~~~~---~~i~l~DTpG~i 273 (376)
..++|++||.+|||||||+++++..+ .....+..|++.....+..+ -.+.+.||+|--
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~ 73 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 45789999999999999999986433 12234455555443333332 257899999974
No 296
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.59 E-value=9.6e-05 Score=67.17 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=36.6
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCC-ceeEEEEEEeCC----eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRVLKWVRFGK----DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-~T~~~~~~~~~~----~i~l~DTpG~i 273 (376)
.+|.++|-.|||||||+|+|.+.... .+..|. .+.......... .+.++||+|..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~ 65 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFP-EGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQE 65 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCc-ccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHH
Confidence 68999999999999999999965432 222222 223333222222 37889999985
No 297
>PRK12736 elongation factor Tu; Reviewed
Probab=97.58 E-value=0.00056 Score=68.58 Aligned_cols=84 Identities=17% Similarity=0.071 Sum_probs=55.9
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHhHH-----HHHHHHHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADRN-----AWATYFAK 174 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp-~ilVlNK~DL~~~~~~~-----~w~~~~~~ 174 (376)
-|||. ++.+.+..-+..+|+++.|+|+..+......+...++ .+.| .++++||+|+++.++.. +...++..
T Consensus 82 tPGh~-~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~ 160 (394)
T PRK12736 82 CPGHA-DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred CCCHH-HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 38874 5566666667899999999999876554444444433 2566 56889999998644322 22233333
Q ss_pred hC-----ceEEEeeCcCC
Q 017132 175 QG-----TKVIFSNGQLG 187 (376)
Q Consensus 175 ~g-----~~vi~iSa~~g 187 (376)
.+ .+++++|+.+|
T Consensus 161 ~~~~~~~~~ii~vSa~~g 178 (394)
T PRK12736 161 YDFPGDDIPVIRGSALKA 178 (394)
T ss_pred hCCCcCCccEEEeecccc
Confidence 34 36889999987
No 298
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.58 E-value=0.00035 Score=61.42 Aligned_cols=102 Identities=12% Similarity=0.087 Sum_probs=61.9
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~--~~~l~~~l-----~~kp~ilVlNK~DL 159 (376)
+..+.+|| . ||+ ....+.....++.+|++++|+|+.++.+.. ..++..++ .+.|.+++.||+|+
T Consensus 58 ~~~~~l~D---~-----~G~-~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl 128 (174)
T cd04153 58 NIRFLMWD---I-----GGQ-ESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDL 128 (174)
T ss_pred CeEEEEEE---C-----CCC-HHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCC
Confidence 44566666 2 333 233334446689999999999987653321 12233333 24799999999998
Q ss_pred CCHHhHHHHHHHHH-----HhCceEEEeeCcCCcchhhhhHHH
Q 017132 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 160 ~~~~~~~~w~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
.......+..+.+. ..+..++.+||++|.|+.++.+.|
T Consensus 129 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l 171 (174)
T cd04153 129 KGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI 171 (174)
T ss_pred CCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence 64221122222221 123457889999999998876554
No 299
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.57 E-value=0.00036 Score=59.86 Aligned_cols=95 Identities=15% Similarity=0.115 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc----CCCeEEEEEccCCCCHHh-HHHH-HHHHHHh
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG----NRKRILVLNREDMISMAD-RNAW-ATYFAKQ 175 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l~----~kp~ilVlNK~DL~~~~~-~~~w-~~~~~~~ 175 (376)
||+ .+........+..+|+++.|+|..++.+..+ ..+..+.. +.|.++|.||+|+..... ...+ .......
T Consensus 57 ~G~-~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~ 135 (161)
T cd01861 57 AGQ-ERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKEL 135 (161)
T ss_pred CCc-HHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHh
Confidence 443 3344455677899999999999977543222 11222221 378999999999954321 2222 2223344
Q ss_pred CceEEEeeCcCCcchhhhhHHHHH
Q 017132 176 GTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 176 g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
+..++.+|++.+.|+.++.+.+.+
T Consensus 136 ~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 136 NAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHH
Confidence 677889999999999988776643
No 300
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.56 E-value=0.00042 Score=72.98 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHHh-cCCCeEEEEEccCCCCHH--h-HHHHHHHHHHhCce
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQWL-GNRKRILVLNREDMISMA--D-RNAWATYFAKQGTK 178 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~-l~~~l-~~kp~ilVlNK~DL~~~~--~-~~~w~~~~~~~g~~ 178 (376)
||| ..+...+...+..+|.++.|+|+..+....... +..+. .+.|+++|+||+|+.... . ...+.+.+.-....
T Consensus 78 PG~-~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 78 PGH-VDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASE 156 (595)
T ss_pred CCc-HHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcce
Confidence 776 456666777899999999999998865443322 22222 367999999999996422 1 12332222111124
Q ss_pred EEEeeCcCCcchhhhhHHHHHhh
Q 017132 179 VIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
++++||++|.|+.+|.+.+.+..
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC
Confidence 78999999999998877765543
No 301
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.56 E-value=0.00045 Score=59.22 Aligned_cols=89 Identities=15% Similarity=-0.033 Sum_probs=59.1
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCCCCHH--hHHHHHHHHHHhCceEE
Q 017132 110 TEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAKQGTKVI 180 (376)
Q Consensus 110 ~~k~l~~vidr~dlILeV~DaR~p~~~~--~~~l~~~l-----~~kp~ilVlNK~DL~~~~--~~~~w~~~~~~~g~~vi 180 (376)
........+..+|.++.++|..++.+.. ...+..+. .+.|.++|+||+|+.+.. ..........+.+.+++
T Consensus 61 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04139 61 YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYV 140 (164)
T ss_pred hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEE
Confidence 3344446788999999999987654221 12222222 368999999999997621 22223333444567889
Q ss_pred EeeCcCCcchhhhhHHHH
Q 017132 181 FSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 181 ~iSa~~g~gi~~L~~~l~ 198 (376)
.+|+++|.|+.++.+.+.
T Consensus 141 ~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 141 ETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred EeeCCCCCCHHHHHHHHH
Confidence 999999999999876654
No 302
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.55 E-value=0.00011 Score=74.30 Aligned_cols=57 Identities=23% Similarity=0.375 Sum_probs=42.1
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccc------------------------------cccCCCCceeEEEEEEe---CC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC------------------------------PAAPRPGVTRVLKWVRF---GK 262 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~------------------------------~v~~~pg~T~~~~~~~~---~~ 262 (376)
..++|+++|.+|+|||||+++|+..... ..+...|+|.|.....+ +.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 3578999999999999999999842111 01124689999766555 34
Q ss_pred eEEEEeCCCC
Q 017132 263 DLEFLDSPGI 272 (376)
Q Consensus 263 ~i~l~DTpG~ 272 (376)
.+.++||||.
T Consensus 86 ~i~iiDtpGh 95 (426)
T TIGR00483 86 EVTIVDCPGH 95 (426)
T ss_pred EEEEEECCCH
Confidence 6889999994
No 303
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.55 E-value=9.6e-05 Score=75.81 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=22.1
Q ss_pred CceEEeEeecCCCCcchhhhhhhhc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
..++|+++|.+|+|||||+++|+..
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~ 50 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHD 50 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHh
Confidence 4578999999999999999999753
No 304
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.54 E-value=0.0001 Score=64.33 Aligned_cols=52 Identities=23% Similarity=0.305 Sum_probs=33.5
Q ss_pred EeEeecCCCCcchhhhhhhhcccc-cccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 220 AGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
|.++|.+|||||||+|++.+.... ...+..|. +...+.. +..+.+.||||--
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~--~~~~i~~~~~~l~i~Dt~G~~ 55 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGF--NSVAIPTQDAIMELLEIGGSQ 55 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCc--ceEEEeeCCeEEEEEECCCCc
Confidence 789999999999999999965321 11122222 1122222 3467899999964
No 305
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.54 E-value=0.00042 Score=71.13 Aligned_cols=91 Identities=15% Similarity=0.239 Sum_probs=60.2
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc---HHHHHHhcCCCeEEEEEccCCCCHH--hHHHHHH----HHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQWLGNRKRILVLNREDMISMA--DRNAWAT----YFA 173 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~---~~l~~~l~~kp~ilVlNK~DL~~~~--~~~~w~~----~~~ 173 (376)
-|||. .+.+.+..-+..+|+++.|+|+..+..... ..+...++.++.++++||+|+++.. ......+ ++.
T Consensus 114 TPGh~-~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~ 192 (474)
T PRK05124 114 TPGHE-QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAE 192 (474)
T ss_pred CCCcH-HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHHHHHHHHHH
Confidence 38874 555666666899999999999987764432 2334444456788999999998422 1222222 222
Q ss_pred Hh----CceEEEeeCcCCcchhhhh
Q 017132 174 KQ----GTKVIFSNGQLGMGTMKLS 194 (376)
Q Consensus 174 ~~----g~~vi~iSa~~g~gi~~L~ 194 (376)
+. ...++++|+++|.|+..+.
T Consensus 193 ~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 193 QLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred hcCCCCCceEEEEEeecCCCccccc
Confidence 22 2568999999999987643
No 306
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.53 E-value=7.9e-05 Score=64.89 Aligned_cols=30 Identities=43% Similarity=0.650 Sum_probs=24.7
Q ss_pred EeEeecCCCCcchhhhhhhhcccccccCCC
Q 017132 220 AGIVGYPNVGKSSLINRLLKRRMCPAAPRP 249 (376)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p 249 (376)
|+++|-.++|||||||+|+|.....++..|
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~ 30 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGP 30 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSS
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccc
Confidence 689999999999999999998655555554
No 307
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.53 E-value=0.0004 Score=70.34 Aligned_cols=88 Identities=19% Similarity=0.233 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH------HHHHhcCCCeEEEEEccCCCC--HHh----HHHHHHH
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL------MDQWLGNRKRILVLNREDMIS--MAD----RNAWATY 171 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~------l~~~l~~kp~ilVlNK~DL~~--~~~----~~~w~~~ 171 (376)
||| +++.+.+...+..+|+++.|+|+..+......+ +.+.....+.++|+||+|+.+ .+. ..++.++
T Consensus 93 pGh-~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~ 171 (426)
T TIGR00483 93 PGH-RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAIKKEVSNL 171 (426)
T ss_pred CCH-HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHHHHHHHHH
Confidence 776 456666666678999999999999874332222 222233457888999999974 221 2233344
Q ss_pred HHHhC-----ceEEEeeCcCCcchhh
Q 017132 172 FAKQG-----TKVIFSNGQLGMGTMK 192 (376)
Q Consensus 172 ~~~~g-----~~vi~iSa~~g~gi~~ 192 (376)
+...+ ..++++|+++|.|+.+
T Consensus 172 ~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 172 IKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHcCCCcccceEEEeeccccccccc
Confidence 44444 4678999999999875
No 308
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=97.53 E-value=4.1e-05 Score=68.46 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=39.6
Q ss_pred ceEEeEeecCCCCcchhhhhhhhccccc-----------------ccCCCCceeEEEEEE-----eCCeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP-----------------AAPRPGVTRVLKWVR-----FGKDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~-----------------v~~~pg~T~~~~~~~-----~~~~i~l~DTpG~i 273 (376)
.++|+++|..++|||||+++|+...... .+...|.|.+..... -+..+.++||||..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3579999999999999999998543110 112246666643333 24579999999974
No 309
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.53 E-value=0.00019 Score=63.01 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=37.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeE---EEEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV---LKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~---~~~~~~~~---~i~l~DTpG~i 273 (376)
+..+|.++|.+|||||||+|++++.. ..+.+...|+.. ...+.++. .+.+.||+|--
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~ 65 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRS-FSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDE 65 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCC-CCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcc
Confidence 35789999999999999999999654 221333333322 22333322 45678999864
No 310
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.52 E-value=0.00055 Score=59.53 Aligned_cols=92 Identities=15% Similarity=0.116 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccCCCCHHh--HHHHHHHHH
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWATYFA 173 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~w~~~~~ 173 (376)
||+ .+........++.+|.++.++|+.++.+.. .+..++ .+.|.++|.||+|+..... .+...+...
T Consensus 60 ~g~-~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 136 (167)
T cd01867 60 AGQ-ERFRTITTAYYRGAMGIILVYDITDEKSFE--NIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALAD 136 (167)
T ss_pred Cch-HHHHHHHHHHhCCCCEEEEEEECcCHHHHH--hHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHH
Confidence 443 334444456789999999999987654321 222222 2468999999999975321 122223344
Q ss_pred HhCceEEEeeCcCCcchhhhhHHHH
Q 017132 174 KQGTKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 174 ~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
..+..++.+|++.|.|+.++.+.+.
T Consensus 137 ~~~~~~~~~Sa~~~~~v~~~~~~i~ 161 (167)
T cd01867 137 EYGIKFLETSAKANINVEEAFFTLA 161 (167)
T ss_pred HcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 5567789999999999988765543
No 311
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.51 E-value=0.00056 Score=72.76 Aligned_cols=88 Identities=23% Similarity=0.309 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHH---HhcCCCeEEEEEccCCCC--HHhHHH----HHHHHHH
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQ---WLGNRKRILVLNREDMIS--MADRNA----WATYFAK 174 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~---~l~~kp~ilVlNK~DL~~--~~~~~~----w~~~~~~ 174 (376)
||| .++.+.+...+..+|+++.|+|+..+......+... .+..++.++++||+|+++ .+.... ..+++.+
T Consensus 112 PG~-~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~ 190 (632)
T PRK05506 112 PGH-EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAK 190 (632)
T ss_pred CCh-HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHH
Confidence 887 455666666789999999999998876554333322 233467888999999985 222222 2222333
Q ss_pred hC---ceEEEeeCcCCcchhh
Q 017132 175 QG---TKVIFSNGQLGMGTMK 192 (376)
Q Consensus 175 ~g---~~vi~iSa~~g~gi~~ 192 (376)
.+ ..++++|+.+|.|+.+
T Consensus 191 ~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 191 LGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred cCCCCccEEEEecccCCCccc
Confidence 34 3589999999999864
No 312
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.51 E-value=0.00044 Score=58.42 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=64.5
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh----cCCCeEEEEEccCCC-
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMI- 160 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l----~~kp~ilVlNK~DL~- 160 (376)
.++.+|| .||+ ..........+..+|+++.|+|+.++.+... ..+..+. ...|.++++||+|+.
T Consensus 49 ~~~~l~D--------~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 119 (159)
T cd00154 49 VKLQIWD--------TAGQ-ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLED 119 (159)
T ss_pred EEEEEEe--------cCCh-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccc
Confidence 4556666 2554 3344455577899999999999987432111 1111111 247999999999996
Q ss_pred CHH-hHHHHHHHHHHhCceEEEeeCcCCcchhhhhHHH
Q 017132 161 SMA-DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 161 ~~~-~~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
+.. ............+..++.+|++.+.|+.++.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i 157 (159)
T cd00154 120 QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSL 157 (159)
T ss_pred cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence 222 2222333334456789999999999998886654
No 313
>PRK11058 GTPase HflX; Provisional
Probab=97.51 E-value=0.00065 Score=68.74 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=57.9
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcHH-HHHH---hc--CCCeEEEEEccCCCCHHhHHHHHHHHHHhCce-EEEee
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPL-MDQW---LG--NRKRILVLNREDMISMADRNAWATYFAKQGTK-VIFSN 183 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~~~-l~~~---l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~-vi~iS 183 (376)
.+...+.+..+|++|.|+|+.++....+.. +..+ +. +.|+++|+||+|+.+..... ... ...+.. ++++|
T Consensus 267 f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~-~~~~~~~~v~IS 343 (426)
T PRK11058 267 FKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDR-DEENKPIRVWLS 343 (426)
T ss_pred HHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHH-HhcCCCceEEEe
Confidence 334456688999999999998875443321 1122 22 58999999999998542211 111 122333 57899
Q ss_pred CcCCcchhhhhHHHHHhh
Q 017132 184 GQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 184 a~~g~gi~~L~~~l~~l~ 201 (376)
+++|.|+.+|.+.+.+..
T Consensus 344 AktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 344 AQTGAGIPLLFQALTERL 361 (426)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999987776543
No 314
>CHL00071 tufA elongation factor Tu
Probab=97.51 E-value=0.00067 Score=68.35 Aligned_cols=85 Identities=19% Similarity=0.131 Sum_probs=58.1
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHhHH-----HHHHHHHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADRN-----AWATYFAK 174 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp-~ilVlNK~DL~~~~~~~-----~w~~~~~~ 174 (376)
-||| .++.+.+..-+..+|+++.|+|++.+......+...++ .+.| .++++||+|+++.++.. +...+++.
T Consensus 82 tPGh-~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~ 160 (409)
T CHL00071 82 CPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSK 160 (409)
T ss_pred CCCh-HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHH
Confidence 4887 46677777778999999999999976654444444433 2567 56889999999755422 23334444
Q ss_pred hC-----ceEEEeeCcCCc
Q 017132 175 QG-----TKVIFSNGQLGM 188 (376)
Q Consensus 175 ~g-----~~vi~iSa~~g~ 188 (376)
.+ ..++++|+..|.
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 161 YDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred hCCCCCcceEEEcchhhcc
Confidence 33 467889988775
No 315
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.50 E-value=0.00044 Score=60.75 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=65.0
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCCC
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMI 160 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l--~~kp~ilVlNK~DL~ 160 (376)
..+-+||- ||+ .+........++.+|.++.|+|..++.+..+. ++.... .+.|.++|.||+|+.
T Consensus 63 ~~~~i~Dt--------~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 133 (180)
T cd04127 63 IHLQLWDT--------AGQ-ERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE 133 (180)
T ss_pred EEEEEEeC--------CCh-HHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence 34566772 443 34444455678999999999998865433221 111111 246899999999997
Q ss_pred CHHh--HHHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHH
Q 017132 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 161 ~~~~--~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
+... .+...++..+.+..++.+|++.|.|+.++.+.+.+
T Consensus 134 ~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 134 DQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLD 174 (180)
T ss_pred hcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 5321 11222233344667889999999999988766543
No 316
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.50 E-value=0.00011 Score=68.30 Aligned_cols=57 Identities=35% Similarity=0.539 Sum_probs=45.6
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EE-EeCCeEEEEeCCCCcCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WV-RFGKDLEFLDSPGIIPM 275 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~-~~~~~i~l~DTpG~i~~ 275 (376)
-+|++||+|.|||||+++.|++. ...|...-|+|.-.. .. .-+.++.|.|-||+|..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~-~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiieg 119 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGT-FSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEG 119 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCC-CCccccccceeEEEecceEeccccceeeecCcchhcc
Confidence 47999999999999999999974 356777788887642 22 23678999999999964
No 317
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.50 E-value=0.00053 Score=60.23 Aligned_cols=93 Identities=16% Similarity=0.031 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccCCCCHHhH---H-HHHHHHHHhCc
Q 017132 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMADR---N-AWATYFAKQGT 177 (376)
Q Consensus 109 ~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l~-----~kp~ilVlNK~DL~~~~~~---~-~w~~~~~~~g~ 177 (376)
+........+..+|+++.|+|+.++.+... ..+..+.. ..|.++|.||+|+.+.... . .......+.+.
T Consensus 61 ~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~ 140 (170)
T cd04108 61 RFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQA 140 (170)
T ss_pred HHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCC
Confidence 333334466899999999999976432221 11222221 2358999999999754321 1 11122234456
Q ss_pred eEEEeeCcCCcchhhhhHHHHHhh
Q 017132 178 KVIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 178 ~vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
.++.+|++.|.|+.++.+.+.++.
T Consensus 141 ~~~e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 141 EYWSVSALSGENVREFFFRVAALT 164 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 778899999999999877766554
No 318
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.50 E-value=0.00042 Score=70.10 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCC--CCCCCcHHHHHH---hcCCCeEEEEEccCCCCHHh--H----HHHHHHH
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARI--PLSTTHPLMDQW---LGNRKRILVLNREDMISMAD--R----NAWATYF 172 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~--p~~~~~~~l~~~---l~~kp~ilVlNK~DL~~~~~--~----~~w~~~~ 172 (376)
||| .++.+.+...+..+|+++.|+|+.+ +......+...+ ...++.++++||+|+.+... . .+..+.+
T Consensus 92 pG~-~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l 170 (425)
T PRK12317 92 PGH-RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVKEEVSKLL 170 (425)
T ss_pred CCc-ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHHHHHHHHH
Confidence 776 4455666666789999999999987 333322222222 22346889999999985211 1 1222333
Q ss_pred HHhC-----ceEEEeeCcCCcchhhh
Q 017132 173 AKQG-----TKVIFSNGQLGMGTMKL 193 (376)
Q Consensus 173 ~~~g-----~~vi~iSa~~g~gi~~L 193 (376)
...+ ..++++|+.+|.|+.++
T Consensus 171 ~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 171 KMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HhhCCCcCcceEEEeecccCCCcccc
Confidence 3334 35889999999998763
No 319
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.49 E-value=0.0002 Score=64.05 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=33.7
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeE-EEEEEeC---CeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV-LKWVRFG---KDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~-~~~~~~~---~~i~l~DTpG~i 273 (376)
+|+++|.+|||||||++++.+..-. ....|...-+ ...+.++ ..+.+.||+|--
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 59 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFP-QVYEPTVFENYVHDIFVDGLHIELSLWDTAGQE 59 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CccCCcceeeeEEEEEECCEEEEEEEEECCCCh
Confidence 6899999999999999999864321 1111211111 1122232 247889999963
No 320
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.49 E-value=0.00026 Score=62.09 Aligned_cols=102 Identities=12% Similarity=0.055 Sum_probs=62.3
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~--~~~l~~~l-----~~kp~ilVlNK~DL 159 (376)
+..+.+|| + ||+ .+........+..+|+++.|+|+.++.+.. ...+.+.+ .+.|.++|.||+|+
T Consensus 52 ~~~~~l~D---t-----~G~-~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 122 (168)
T cd04149 52 NVKFNVWD---V-----GGQ-DKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDL 122 (168)
T ss_pred CEEEEEEE---C-----CCC-HHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCC
Confidence 45567777 2 443 334444446789999999999998764321 12222332 24799999999998
Q ss_pred CC---HHhHHHHHHH--HHHhCceEEEeeCcCCcchhhhhHHH
Q 017132 160 IS---MADRNAWATY--FAKQGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 160 ~~---~~~~~~w~~~--~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
.. .++...+.+. +.+....++.+||++|.|+.++.+.|
T Consensus 123 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 123 PDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred ccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHH
Confidence 64 2333333211 11112356789999999988775544
No 321
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.48 E-value=0.00031 Score=61.94 Aligned_cols=103 Identities=11% Similarity=0.079 Sum_probs=61.3
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC--CcHHHHHHh-----cCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~--~~~~l~~~l-----~~kp~ilVlNK~DL 159 (376)
+..+.+||- ||+ .+........+..+|.++.|+|..++.+- ....+..++ .+.|+++|.||+||
T Consensus 56 ~~~l~l~D~--------~G~-~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 126 (175)
T smart00177 56 NISFTVWDV--------GGQ-DKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDL 126 (175)
T ss_pred CEEEEEEEC--------CCC-hhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCc
Confidence 445667772 333 33444445668999999999998765322 122233332 24689999999999
Q ss_pred CCHHhHHHHHHHHH-----HhCceEEEeeCcCCcchhhhhHHHH
Q 017132 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 160 ~~~~~~~~w~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
.......+..+.+. .....++.+|+++|.|+.++.+.|.
T Consensus 127 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~ 170 (175)
T smart00177 127 PDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLS 170 (175)
T ss_pred ccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHH
Confidence 64321112112111 1112355689999999988866554
No 322
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.48 E-value=0.00044 Score=59.43 Aligned_cols=88 Identities=16% Similarity=0.037 Sum_probs=57.0
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCc--H---HHHHHh------cCCCeEEEEEccCCCCHH--hHHHHHHHHHHhCc
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL------GNRKRILVLNREDMISMA--DRNAWATYFAKQGT 177 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~--~---~l~~~l------~~kp~ilVlNK~DL~~~~--~~~~w~~~~~~~g~ 177 (376)
.......+..+|+++.|+|..++.+... . ++.+.. .+.|+++|.||+|+.++. ..........+.+.
T Consensus 63 ~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 142 (168)
T cd04119 63 LEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGF 142 (168)
T ss_pred HHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCC
Confidence 3344466899999999999987643211 1 122222 246899999999997322 12222233344567
Q ss_pred eEEEeeCcCCcchhhhhHHHH
Q 017132 178 KVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 178 ~vi~iSa~~g~gi~~L~~~l~ 198 (376)
.++.+|+++|.|+.++.+.+.
T Consensus 143 ~~~~~Sa~~~~gi~~l~~~l~ 163 (168)
T cd04119 143 KYFETSACTGEGVNEMFQTLF 163 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 788999999999988866543
No 323
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.47 E-value=9.7e-05 Score=67.88 Aligned_cols=55 Identities=25% Similarity=0.303 Sum_probs=39.8
Q ss_pred EEeEeecCCCCcchhhhhhhhccc------------------------------ccccCCCCceeEEEEEEe---CCeEE
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRM------------------------------CPAAPRPGVTRVLKWVRF---GKDLE 265 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~------------------------------~~v~~~pg~T~~~~~~~~---~~~i~ 265 (376)
+|+++|.+++|||||+.+|+.... ...+...|+|++.....+ +..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 389999999999999999963210 001224689998655444 56789
Q ss_pred EEeCCCCc
Q 017132 266 FLDSPGII 273 (376)
Q Consensus 266 l~DTpG~i 273 (376)
++||||..
T Consensus 81 liDtpG~~ 88 (219)
T cd01883 81 ILDAPGHR 88 (219)
T ss_pred EEECCChH
Confidence 99999974
No 324
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.47 E-value=0.0011 Score=58.78 Aligned_cols=85 Identities=13% Similarity=-0.020 Sum_probs=54.9
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHH--H-HHH---hcCCCeEEEEEccCCCCHH------hHHHHHHHHHHhCc-eEEEe
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPL--M-DQW---LGNRKRILVLNREDMISMA------DRNAWATYFAKQGT-KVIFS 182 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~--l-~~~---l~~kp~ilVlNK~DL~~~~------~~~~w~~~~~~~g~-~vi~i 182 (376)
..++.+|+|+.|+|..++.+..+.. + ... ..+.|+++|.||+|+.+.. ....-.+.....+. .++.+
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 147 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLEC 147 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEc
Confidence 4688999999999988754432221 1 111 1357999999999996532 01111122233454 78889
Q ss_pred eCcCCcchhhhhHHHHHh
Q 017132 183 NGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 183 Sa~~g~gi~~L~~~l~~l 200 (376)
|++.|.|+.++.+.+.+.
T Consensus 148 Sa~~~~~v~~~f~~l~~~ 165 (187)
T cd04132 148 SAKTMENVEEVFDTAIEE 165 (187)
T ss_pred cCCCCCCHHHHHHHHHHH
Confidence 999999999876655433
No 325
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.46 E-value=0.00059 Score=61.50 Aligned_cols=86 Identities=14% Similarity=0.120 Sum_probs=58.0
Q ss_pred HHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-------cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEe
Q 017132 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFS 182 (376)
Q Consensus 112 k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~i 182 (376)
......++.+|.++.|+|..++.+... +..++ ...|.++|.||+|+.+... .....++....+..++.+
T Consensus 70 ~~~~~~~~~a~~iilv~D~~~~~s~~~--~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 147 (199)
T cd04110 70 TITSTYYRGTHGVIVVYDVTNGESFVN--VKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFET 147 (199)
T ss_pred HHHHHHhCCCcEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEE
Confidence 334467888999999999987643221 22222 2478999999999975432 122233334456778899
Q ss_pred eCcCCcchhhhhHHHHH
Q 017132 183 NGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 183 Sa~~g~gi~~L~~~l~~ 199 (376)
|++.|.|+.++.+.+..
T Consensus 148 Sa~~~~gi~~lf~~l~~ 164 (199)
T cd04110 148 SAKENINVEEMFNCITE 164 (199)
T ss_pred ECCCCcCHHHHHHHHHH
Confidence 99999999988766544
No 326
>PTZ00099 rab6; Provisional
Probab=97.46 E-value=0.0005 Score=61.06 Aligned_cols=107 Identities=15% Similarity=0.086 Sum_probs=66.3
Q ss_pred cCCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc----CCCeEEEEEccCC
Q 017132 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG----NRKRILVLNREDM 159 (376)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l~----~kp~ilVlNK~DL 159 (376)
....+.+|| + ||+ .+........++.+|++|.|+|...+.+..+ ..+..+.. ..|+++|.||+||
T Consensus 27 ~~v~l~iwD---t-----~G~-e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL 97 (176)
T PTZ00099 27 GPVRLQLWD---T-----AGQ-ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDL 97 (176)
T ss_pred EEEEEEEEE---C-----CCh-HHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccc
Confidence 346677787 2 333 3444445567899999999999876543222 22332221 4577999999999
Q ss_pred CCHH--hHHHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHHhh
Q 017132 160 ISMA--DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 160 ~~~~--~~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
.... ............+..++.+||++|.|+.++.+.+.+..
T Consensus 98 ~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 98 GDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 6421 11122222333455677899999999998876655443
No 327
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=97.45 E-value=0.00083 Score=58.27 Aligned_cols=87 Identities=14% Similarity=0.034 Sum_probs=57.1
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEE
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVI 180 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi 180 (376)
.......++.+|.++.|+|..++.+.. ++..|+ ...|.++|.||+|+.+... ...-.+.....+..++
T Consensus 64 ~~~~~~~~~~~~~~l~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (165)
T cd01865 64 RTITTAYYRGAMGFILMYDITNEESFN--AVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFF 141 (165)
T ss_pred HHHHHHHccCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEE
Confidence 333446689999999999987653221 222222 2468999999999976432 1122222334566788
Q ss_pred EeeCcCCcchhhhhHHHHH
Q 017132 181 FSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 181 ~iSa~~g~gi~~L~~~l~~ 199 (376)
.+|+++|.|+.++.+.+.+
T Consensus 142 ~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 142 EASAKENINVKQVFERLVD 160 (165)
T ss_pred EEECCCCCCHHHHHHHHHH
Confidence 9999999999888666543
No 328
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.45 E-value=0.0004 Score=60.38 Aligned_cols=88 Identities=11% Similarity=0.021 Sum_probs=56.4
Q ss_pred HHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHH----HhcCCCeEEEEEccCCCCHHhH---HHHHHHH-HHh-C-ceE
Q 017132 112 KELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLNREDMISMADR---NAWATYF-AKQ-G-TKV 179 (376)
Q Consensus 112 k~l~~vidr~dlILeV~DaR~p~~~~~~--~l~~----~l~~kp~ilVlNK~DL~~~~~~---~~w~~~~-~~~-g-~~v 179 (376)
..+...+..+|+++.|+|..++.+..+. .+.. ...+.|+++|.||+|+.+.... ......+ .+. . ..+
T Consensus 62 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (166)
T cd01893 62 ANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETC 141 (166)
T ss_pred HHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEE
Confidence 3344557899999999998876543331 1111 1236799999999999865431 1211111 111 1 367
Q ss_pred EEeeCcCCcchhhhhHHHHH
Q 017132 180 IFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~ 199 (376)
+.+|+++|.|+.++.+.+.+
T Consensus 142 ~e~Sa~~~~~v~~lf~~~~~ 161 (166)
T cd01893 142 VECSAKTLINVSEVFYYAQK 161 (166)
T ss_pred EEeccccccCHHHHHHHHHH
Confidence 88999999999888766544
No 329
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.44 E-value=0.00016 Score=70.32 Aligned_cols=60 Identities=23% Similarity=0.336 Sum_probs=39.0
Q ss_pred CCceEEeEeecCCCCcchhhhhhhhcccccc----cCCCC---ceeEEEE--EEe-C----CeEEEEeCCCCcC
Q 017132 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPA----APRPG---VTRVLKW--VRF-G----KDLEFLDSPGIIP 274 (376)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v----~~~pg---~T~~~~~--~~~-~----~~i~l~DTpG~i~ 274 (376)
+.+.+|++||-.|.||||+||.|++...... ...+. .|..+.. ..+ + -++.++|||||-.
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD 94 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD 94 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc
Confidence 4578999999999999999999998632211 11222 2222222 222 1 2478999999975
No 330
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.43 E-value=0.00021 Score=63.08 Aligned_cols=54 Identities=20% Similarity=0.205 Sum_probs=35.5
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
++|.+||-+|||||||++++.... ...+..-|+.+.. .+.++. .+.+.||+|--
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~--f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK--FPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQE 60 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC--CCCCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 479999999999999999998643 2233322332211 223332 46799999984
No 331
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.42 E-value=0.00044 Score=61.52 Aligned_cols=102 Identities=11% Similarity=0.095 Sum_probs=61.9
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~--~~~l~~~l-----~~kp~ilVlNK~DL 159 (376)
+..+.+||- ||+ .+........+..+|.++.|+|+.++.+-. ..++.+++ .+.|.++|.||+|+
T Consensus 60 ~~~~~i~D~--------~Gq-~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl 130 (181)
T PLN00223 60 NISFTVWDV--------GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
T ss_pred CEEEEEEEC--------CCC-HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCC
Confidence 455666662 343 344444456789999999999998754321 22333333 25789999999998
Q ss_pred CCHHhHHHHHHHHHHhC-----ceEEEeeCcCCcchhhhhHHH
Q 017132 160 ISMADRNAWATYFAKQG-----TKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 160 ~~~~~~~~w~~~~~~~g-----~~vi~iSa~~g~gi~~L~~~l 197 (376)
..........+.+.-.. ..++.+||++|.|+.++.+.|
T Consensus 131 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l 173 (181)
T PLN00223 131 PNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 173 (181)
T ss_pred CCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHH
Confidence 75433333222221111 123457999999988876554
No 332
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.42 E-value=0.0004 Score=66.98 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=62.9
Q ss_pred HHHHHhhhcCeEEEEEecCCCCC-----CC---cHHHHHH---hcCCCeEEEEEccCC-CCHHhHHHHHHHHHHhCc-e-
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLS-----TT---HPLMDQW---LGNRKRILVLNREDM-ISMADRNAWATYFAKQGT-K- 178 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~-----~~---~~~l~~~---l~~kp~ilVlNK~DL-~~~~~~~~w~~~~~~~g~-~- 178 (376)
++.+.|+||-++++|+|...-.. .. ..+++.+ +.+||.++|+||+|+ .+.++.+...+++.+... .
T Consensus 230 ~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~ 309 (369)
T COG0536 230 RFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEV 309 (369)
T ss_pred HHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCc
Confidence 45577999999999999863221 11 1123332 347999999999994 466666777777765432 2
Q ss_pred EEEeeCcCCcchhhhhHHHHHhhhhh
Q 017132 179 VIFSNGQLGMGTMKLSRLAKALASDV 204 (376)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~l~~~~ 204 (376)
.+++|+.++.|+..|...+.++....
T Consensus 310 ~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 310 FYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred ceeeehhcccCHHHHHHHHHHHHHHh
Confidence 22399999999999887776665443
No 333
>PRK00049 elongation factor Tu; Reviewed
Probab=97.42 E-value=0.0011 Score=66.64 Aligned_cols=85 Identities=21% Similarity=0.121 Sum_probs=56.7
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeE-EEEEccCCCCHHhHH-----HHHHHHHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRI-LVLNREDMISMADRN-----AWATYFAK 174 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~i-lVlNK~DL~~~~~~~-----~w~~~~~~ 174 (376)
-||| .++.+.+...+..+|+++.|+|++.+......++..++ .+.|.+ +++||+|+.+.++.. +..+.+..
T Consensus 82 tPG~-~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~ 160 (396)
T PRK00049 82 CPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred CCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHh
Confidence 4888 56777777778999999999999887554443444433 257876 589999998643321 22223333
Q ss_pred hC-----ceEEEeeCcCCc
Q 017132 175 QG-----TKVIFSNGQLGM 188 (376)
Q Consensus 175 ~g-----~~vi~iSa~~g~ 188 (376)
.+ .+++++|+.+|.
T Consensus 161 ~~~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 161 YDFPGDDTPIIRGSALKAL 179 (396)
T ss_pred cCCCccCCcEEEeeccccc
Confidence 33 357889998764
No 334
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.42 E-value=0.0018 Score=64.92 Aligned_cols=85 Identities=20% Similarity=0.115 Sum_probs=54.6
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeE-EEEEccCCCCHHhHH-----HHHHHHHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRI-LVLNREDMISMADRN-----AWATYFAK 174 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~i-lVlNK~DL~~~~~~~-----~w~~~~~~ 174 (376)
-||| +++.+.+..-+..+|.++.|+|++.+......+...++ .+.|.+ +++||+|+++.++.. +..+++..
T Consensus 82 tpGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~ 160 (394)
T TIGR00485 82 CPGH-ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred CCch-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 3888 45666666667889999999999976443333333332 256655 689999998754321 22333443
Q ss_pred hC-----ceEEEeeCcCCc
Q 017132 175 QG-----TKVIFSNGQLGM 188 (376)
Q Consensus 175 ~g-----~~vi~iSa~~g~ 188 (376)
.+ .+++++|+.+|.
T Consensus 161 ~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 161 YDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred cCCCccCccEEECcccccc
Confidence 33 468889998764
No 335
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.42 E-value=0.00095 Score=57.76 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=62.9
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh----cCCCeEEEEEccCCCC
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMIS 161 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l----~~kp~ilVlNK~DL~~ 161 (376)
..+.+|| .||+ .+........+..+|+++.++|+..+.+... ..+..+. .+.|.++|.||+|+..
T Consensus 52 ~~l~i~D--------~~G~-~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 52 VKLQIWD--------TAGQ-ERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEE 122 (165)
T ss_pred EEEEEEE--------CCCh-HHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 4566666 3554 3344444567889999999999987643221 1111111 1468999999999975
Q ss_pred HHh--HHHHHHHHHHhC-ceEEEeeCcCCcchhhhhHHH
Q 017132 162 MAD--RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 162 ~~~--~~~w~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l 197 (376)
.+. ........+..+ ..++.+|+++|.|+.++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l 161 (165)
T cd01864 123 QREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM 161 (165)
T ss_pred ccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence 432 111112223333 367889999999998876554
No 336
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.40 E-value=0.00029 Score=61.60 Aligned_cols=89 Identities=13% Similarity=0.092 Sum_probs=54.7
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCC--CcHHHHHHhc-----CCCeEEEEEccCCCCH---HhHHHHHHHHHH-hC--
Q 017132 110 TEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDMISM---ADRNAWATYFAK-QG-- 176 (376)
Q Consensus 110 ~~k~l~~vidr~dlILeV~DaR~p~~~--~~~~l~~~l~-----~kp~ilVlNK~DL~~~---~~~~~w~~~~~~-~g-- 176 (376)
........+..+|.++.|+|..++.+- ....+..++. +.|+++|.||+|+... ++...+.+.... .+
T Consensus 56 ~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 135 (169)
T cd04158 56 LRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRS 135 (169)
T ss_pred cchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCc
Confidence 334445678999999999998765322 2222333332 3689999999999643 222222211110 01
Q ss_pred ceEEEeeCcCCcchhhhhHHHH
Q 017132 177 TKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 177 ~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
..++.+|+++|.|+.++.+.|.
T Consensus 136 ~~~~~~Sa~~g~gv~~~f~~l~ 157 (169)
T cd04158 136 WYIQGCDARSGMGLYEGLDWLS 157 (169)
T ss_pred EEEEeCcCCCCCCHHHHHHHHH
Confidence 2456689999999988766553
No 337
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.40 E-value=0.00088 Score=57.59 Aligned_cols=101 Identities=14% Similarity=0.086 Sum_probs=65.1
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh----cCCCeEEEEEccCCCC
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMIS 161 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l----~~kp~ilVlNK~DL~~ 161 (376)
..+.+|| .||| .+........+..+|.++.++|...+.+..+ ..+.... .+.|.++|.||+|+..
T Consensus 49 ~~l~l~D--------~~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 49 VKLQIWD--------TAGQ-ERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred EEEEEEE--------Ccch-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 4455666 2454 3344444566889999999999987544322 1112111 2578999999999975
Q ss_pred HHh--HHHHHHHHHHhCceEEEeeCcCCcchhhhhHHH
Q 017132 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 162 ~~~--~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
... ...........+..++.+|++++.|+.++.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~ 157 (161)
T cd04113 120 QREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKC 157 (161)
T ss_pred hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 432 222333444556788999999999998876544
No 338
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.40 E-value=0.00022 Score=62.89 Aligned_cols=53 Identities=19% Similarity=0.142 Sum_probs=33.4
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeC---CeEEEEeCCCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGI 272 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~---~~i~l~DTpG~ 272 (376)
++|+++|.+|||||||+.++.... ......-++.+.. .+.++ -.+.+.||||-
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~--f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~ 59 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQ 59 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC--CCCcCCCcceeeeEEEEEECCEEEEEEEEECCCc
Confidence 479999999999999999998533 1222111222211 12222 24779999996
No 339
>PRK04213 GTP-binding protein; Provisional
Probab=97.39 E-value=0.0018 Score=58.12 Aligned_cols=82 Identities=15% Similarity=0.087 Sum_probs=51.9
Q ss_pred HhhhcCeEEEEEecCCCCCC-----------CcHHHHHHh--cCCCeEEEEEccCCCCHH--hHHHHHHHHHHh------
Q 017132 117 QLKLMDVVIEVRDARIPLST-----------THPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYFAKQ------ 175 (376)
Q Consensus 117 vidr~dlILeV~DaR~p~~~-----------~~~~l~~~l--~~kp~ilVlNK~DL~~~~--~~~~w~~~~~~~------ 175 (376)
.++.+++++.|+|+...... .+.++...+ .+.|.++|+||+|+.+.. ....+.+.+.-.
T Consensus 87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 166 (201)
T PRK04213 87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQW 166 (201)
T ss_pred hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCcccccc
Confidence 35678899999998653211 112223332 378999999999997654 223333332210
Q ss_pred CceEEEeeCcCCcchhhhhHHHHH
Q 017132 176 GTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 176 g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
+..++.+||++| |+.++.+.+.+
T Consensus 167 ~~~~~~~SA~~g-gi~~l~~~l~~ 189 (201)
T PRK04213 167 QDIIAPISAKKG-GIEELKEAIRK 189 (201)
T ss_pred CCcEEEEecccC-CHHHHHHHHHH
Confidence 124789999999 99988776654
No 340
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.39 E-value=0.00014 Score=68.14 Aligned_cols=53 Identities=25% Similarity=0.395 Sum_probs=35.5
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|++.+.. . ......|+.+. ..+.++. .+.|.||+|.-
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~-f-~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~ 59 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGR-F-EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNH 59 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCC-C-CCCCCCChhHhEEEEEEECCEEEEEEEEECCCCh
Confidence 69999999999999999998543 1 22333343332 2333432 46799999974
No 341
>PRK12735 elongation factor Tu; Reviewed
Probab=97.39 E-value=0.0011 Score=66.48 Aligned_cols=97 Identities=20% Similarity=0.124 Sum_probs=60.8
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeE-EEEEccCCCCHHhHH-----HHHHHHHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRI-LVLNREDMISMADRN-----AWATYFAK 174 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~i-lVlNK~DL~~~~~~~-----~w~~~~~~ 174 (376)
-||| +.+.+.+...+..+|+++.|+|+..+......+...++ .+.|.+ +++||+|+++.++.. +...++..
T Consensus 82 tPGh-~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~ 160 (396)
T PRK12735 82 CPGH-ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred CCCH-HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 3888 46667777778899999999999875433322332332 256766 579999998643322 22223333
Q ss_pred hC-----ceEEEeeCcCCc----------chhhhhHHHHHh
Q 017132 175 QG-----TKVIFSNGQLGM----------GTMKLSRLAKAL 200 (376)
Q Consensus 175 ~g-----~~vi~iSa~~g~----------gi~~L~~~l~~l 200 (376)
.+ ..++++|+..|. ++..|.+.+..+
T Consensus 161 ~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 161 YDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred cCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 32 467889998874 445555555443
No 342
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.39 E-value=0.00064 Score=61.11 Aligned_cols=91 Identities=13% Similarity=0.021 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhcCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEE
Q 017132 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVI 180 (376)
Q Consensus 108 ~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi 180 (376)
.+...........+|.+|.|+|...+.+..+. ++.....+.|+++|.||+||..... ......+.++.+..++
T Consensus 66 ~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~ 145 (189)
T cd04121 66 GRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFF 145 (189)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEE
Confidence 34444444667999999999999876544332 1212223578999999999964221 1122233345567888
Q ss_pred EeeCcCCcchhhhhHHHH
Q 017132 181 FSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 181 ~iSa~~g~gi~~L~~~l~ 198 (376)
.+||+.|.|++++.+.+.
T Consensus 146 e~SAk~g~~V~~~F~~l~ 163 (189)
T cd04121 146 EVSPLCNFNITESFTELA 163 (189)
T ss_pred EecCCCCCCHHHHHHHHH
Confidence 999999999988765554
No 343
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.38 E-value=0.00073 Score=58.21 Aligned_cols=86 Identities=9% Similarity=-0.094 Sum_probs=55.4
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEee
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSN 183 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l--~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iS 183 (376)
.....+..+|.++.|+|+.++.+..+. .+.+.. ...|.++|.||+|+.+... ...-.......+..++.+|
T Consensus 64 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 143 (164)
T smart00173 64 MRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETS 143 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEee
Confidence 334568889999999999875432111 111111 1579999999999975321 1111122334456788999
Q ss_pred CcCCcchhhhhHHHH
Q 017132 184 GQLGMGTMKLSRLAK 198 (376)
Q Consensus 184 a~~g~gi~~L~~~l~ 198 (376)
++.|.|+.++.+.+.
T Consensus 144 a~~~~~i~~l~~~l~ 158 (164)
T smart00173 144 AKERVNVDEAFYDLV 158 (164)
T ss_pred cCCCCCHHHHHHHHH
Confidence 999999998866554
No 344
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.38 E-value=0.00053 Score=61.09 Aligned_cols=87 Identities=10% Similarity=-0.011 Sum_probs=56.2
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh---cCCCeEEEEEccCCCCHHh------HHHHHHHHHHhCceEEEee
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL---GNRKRILVLNREDMISMAD------RNAWATYFAKQGTKVIFSN 183 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l---~~kp~ilVlNK~DL~~~~~------~~~w~~~~~~~g~~vi~iS 183 (376)
...+..+|+++.|+|..++.+..+ ..+..+. .+.|+++|.||+|+.+... .....++....+..++.+|
T Consensus 68 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~S 147 (193)
T cd04118 68 RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETS 147 (193)
T ss_pred HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEe
Confidence 345789999999999876543221 1122221 2578999999999875321 1112222234456788999
Q ss_pred CcCCcchhhhhHHHHHhh
Q 017132 184 GQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 184 a~~g~gi~~L~~~l~~l~ 201 (376)
+++|.|+.+|.+.+.+..
T Consensus 148 a~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 148 SKTGQNVDELFQKVAEDF 165 (193)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999998877765443
No 345
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.38 E-value=0.00039 Score=60.19 Aligned_cols=85 Identities=14% Similarity=0.060 Sum_probs=53.7
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh---cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEee
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL---GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSN 183 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l---~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iS 183 (376)
....+..+|+++.++|..++.+..+. .+.... .+.|.++|.||+|+..... ........+..+..++.+|
T Consensus 65 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 144 (165)
T cd04146 65 LERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVS 144 (165)
T ss_pred HHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeC
Confidence 34567889999999999876432211 122222 2688999999999864321 1112222234456778899
Q ss_pred CcCC-cchhhhhHHHH
Q 017132 184 GQLG-MGTMKLSRLAK 198 (376)
Q Consensus 184 a~~g-~gi~~L~~~l~ 198 (376)
++.| .|+.++.+.+.
T Consensus 145 a~~~~~~v~~~f~~l~ 160 (165)
T cd04146 145 AAEDYDGVHSVFHELC 160 (165)
T ss_pred CCCCchhHHHHHHHHH
Confidence 9998 48887765543
No 346
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.37 E-value=0.0011 Score=70.99 Aligned_cols=98 Identities=19% Similarity=0.162 Sum_probs=64.7
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH--hHHHHHHHH----HH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYF----AK 174 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~--~~~~w~~~~----~~ 174 (376)
.||| ..+.......+..+|+++.|+|+.++......+....+ .+.|+++++||+|+.... ....+...+ ..
T Consensus 302 TPGh-e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~ 380 (742)
T CHL00189 302 TPGH-EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEK 380 (742)
T ss_pred CCcH-HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHh
Confidence 3898 44555555778999999999999876443322222222 368999999999997532 222222111 11
Q ss_pred hC--ceEEEeeCcCCcchhhhhHHHHHhh
Q 017132 175 QG--TKVIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 175 ~g--~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
.| ..++++||++|.|+.+|.+.+..+.
T Consensus 381 ~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 381 WGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred hCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 23 4688999999999999887766553
No 347
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.37 E-value=0.00065 Score=64.88 Aligned_cols=86 Identities=13% Similarity=0.146 Sum_probs=56.3
Q ss_pred HHHHHhhhcCeEEEEEecCCCCC---CCc-----HHHHHH---hcCCCeEEEEEccCCCCHHhHHHHHHHHHHh-CceEE
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLS---TTH-----PLMDQW---LGNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVI 180 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~---~~~-----~~l~~~---l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~-g~~vi 180 (376)
++.+-|+||+.+++|+|...+.. ..+ .+++.+ +..+|.++|.||+|+...+.. ...+..++. +..++
T Consensus 267 ~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~-~l~~L~~~lq~~~V~ 345 (366)
T KOG1489|consen 267 KFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKN-LLSSLAKRLQNPHVV 345 (366)
T ss_pred HHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHH-HHHHHHHHcCCCcEE
Confidence 45577999999999999987622 111 122222 236899999999998633221 112222222 34689
Q ss_pred EeeCcCCcchhhhhHHHHH
Q 017132 181 FSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 181 ~iSa~~g~gi~~L~~~l~~ 199 (376)
.+||+.+.|...|.+.+++
T Consensus 346 pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 346 PVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred EeeeccccchHHHHHHHhh
Confidence 9999999998888776654
No 348
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.37 E-value=0.00012 Score=66.96 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
+|+++|.+++|||||+++|+..
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~ 23 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQ 23 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHh
Confidence 4899999999999999999864
No 349
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.37 E-value=0.00082 Score=58.02 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-------c-CCCeEEEEEccCCCCHHh--HHHHHHHHHHhCce
Q 017132 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------G-NRKRILVLNREDMISMAD--RNAWATYFAKQGTK 178 (376)
Q Consensus 109 ~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l-------~-~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~ 178 (376)
+........++.++.++.|+|..++.+..+ +..++ . +.|.++|.||+|+...+. .+.........+..
T Consensus 64 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 141 (165)
T cd01868 64 RYRAITSAYYRGAVGALLVYDITKKQTFEN--VERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLS 141 (165)
T ss_pred HHHHHHHHHHCCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCE
Confidence 334444567889999999999986544222 22222 1 478999999999975332 12222333345667
Q ss_pred EEEeeCcCCcchhhhhHHHH
Q 017132 179 VIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~ 198 (376)
++.+|++.|.|+.++.+.+.
T Consensus 142 ~~~~Sa~~~~~v~~l~~~l~ 161 (165)
T cd01868 142 FIETSALDGTNVEEAFKQLL 161 (165)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 88999999999988866543
No 350
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.37 E-value=0.0006 Score=58.22 Aligned_cols=84 Identities=11% Similarity=-0.011 Sum_probs=55.0
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCc--H---HHHHHh--cCCCeEEEEEccCCCCHHh-HHHHHHHHHHhCceEEEeeCc
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL--GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQ 185 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~--~---~l~~~l--~~kp~ilVlNK~DL~~~~~-~~~w~~~~~~~g~~vi~iSa~ 185 (376)
....+..+|.++.|+|..++.+..+ . ++.++. .+.|.++|.||+|+..... ...........+..++.+|++
T Consensus 66 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (162)
T cd04138 66 RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAK 145 (162)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCC
Confidence 3457888999999999876432211 1 122221 2579999999999976332 122223334456778899999
Q ss_pred CCcchhhhhHHH
Q 017132 186 LGMGTMKLSRLA 197 (376)
Q Consensus 186 ~g~gi~~L~~~l 197 (376)
+|.|+.++.+.+
T Consensus 146 ~~~gi~~l~~~l 157 (162)
T cd04138 146 TRQGVEEAFYTL 157 (162)
T ss_pred CCCCHHHHHHHH
Confidence 999998876554
No 351
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.37 E-value=0.00016 Score=72.83 Aligned_cols=54 Identities=30% Similarity=0.366 Sum_probs=37.7
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccc--------------------------------cCCCCceeEEEEEEe---CCe
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPA--------------------------------APRPGVTRVLKWVRF---GKD 263 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v--------------------------------~~~pg~T~~~~~~~~---~~~ 263 (376)
+|+++|.+|+|||||+++|+....... +..-|.|.+.....+ +..
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 689999999999999999964321110 112366777654444 457
Q ss_pred EEEEeCCCC
Q 017132 264 LEFLDSPGI 272 (376)
Q Consensus 264 i~l~DTpG~ 272 (376)
+.++||||.
T Consensus 82 ~~liDtPGh 90 (406)
T TIGR02034 82 FIVADTPGH 90 (406)
T ss_pred EEEEeCCCH
Confidence 899999995
No 352
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.36 E-value=0.00074 Score=61.69 Aligned_cols=90 Identities=18% Similarity=0.128 Sum_probs=56.7
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc----CCCeEEEEEccCCCCHHh-H-HHHHHHHHHhCce
Q 017132 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG----NRKRILVLNREDMISMAD-R-NAWATYFAKQGTK 178 (376)
Q Consensus 110 ~~k~l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l~----~kp~ilVlNK~DL~~~~~-~-~~w~~~~~~~g~~ 178 (376)
........+..+|+|+.|+|..++.+..+. ++.+... ..|.++|.||+|+...+. . ..........+..
T Consensus 63 ~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~ 142 (215)
T cd04109 63 GGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGME 142 (215)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCE
Confidence 334444668999999999999876443221 1112211 236889999999974321 1 1111222334567
Q ss_pred EEEeeCcCCcchhhhhHHHHH
Q 017132 179 VIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~ 199 (376)
.+++||++|.|+.++.+.+.+
T Consensus 143 ~~~iSAktg~gv~~lf~~l~~ 163 (215)
T cd04109 143 SCLVSAKTGDRVNLLFQQLAA 163 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 888999999999988666543
No 353
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.00019 Score=70.12 Aligned_cols=60 Identities=25% Similarity=0.313 Sum_probs=39.4
Q ss_pred CCceEEeEeecCCCCcchhhhhhhhccccc------ccCCCCceeEEEEE--EeC-----CeEEEEeCCCCcC
Q 017132 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCP------AAPRPGVTRVLKWV--RFG-----KDLEFLDSPGIIP 274 (376)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~------v~~~pg~T~~~~~~--~~~-----~~i~l~DTpG~i~ 274 (376)
+...++++||-.+-|||||||+|....... +...+--|..+... .+. -++.++|||||-.
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcc
Confidence 356889999999999999999998753111 12233234443322 221 2478899999954
No 354
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.35 E-value=0.00092 Score=57.06 Aligned_cols=84 Identities=20% Similarity=0.097 Sum_probs=56.3
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc-CCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcC
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL 186 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l~-~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~ 186 (376)
...+..+|.++.|+|..++.+.... ++..... +.|.++|+||+|+..... .....++....+..++++|+++
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 146 (162)
T cd04123 67 PIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKT 146 (162)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 3557889999999998765432111 1122222 578999999999985432 2233344445567788999999
Q ss_pred CcchhhhhHHHH
Q 017132 187 GMGTMKLSRLAK 198 (376)
Q Consensus 187 g~gi~~L~~~l~ 198 (376)
+.|+.++.+.+.
T Consensus 147 ~~gi~~~~~~l~ 158 (162)
T cd04123 147 GKGIEELFLSLA 158 (162)
T ss_pred CCCHHHHHHHHH
Confidence 999998876654
No 355
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.34 E-value=0.0012 Score=56.68 Aligned_cols=94 Identities=16% Similarity=0.062 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh----cCCCeEEEEEccCCCCHH--hHHHHHHHHHHh
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMA--DRNAWATYFAKQ 175 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l----~~kp~ilVlNK~DL~~~~--~~~~w~~~~~~~ 175 (376)
||+. +........+..+|.++.|+|+..+.+... ..+..+. ...|.+++.||+|+.+.. ............
T Consensus 58 ~G~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~ 136 (163)
T cd01860 58 AGQE-RYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADEN 136 (163)
T ss_pred CchH-HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHc
Confidence 5543 233333456788999999999986543221 1112221 246789999999987432 222333444555
Q ss_pred CceEEEeeCcCCcchhhhhHHHH
Q 017132 176 GTKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 176 g~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
+..++.+|+++|.|+.++.+.+.
T Consensus 137 ~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 137 GLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 67789999999999988866543
No 356
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.34 E-value=0.00095 Score=60.16 Aligned_cols=89 Identities=13% Similarity=0.068 Sum_probs=57.7
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-----cCCCeEEEEEccCCCCHH--hHHHHHHHHHHhC-c
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNREDMISMA--DRNAWATYFAKQG-T 177 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l-----~~kp~ilVlNK~DL~~~~--~~~~w~~~~~~~g-~ 177 (376)
.......+..+|.++.|+|...+.+..+. ++.... ...|.++|.||+|+.+.. ......++....+ .
T Consensus 64 ~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 143 (201)
T cd04107 64 GGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFI 143 (201)
T ss_pred hhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCc
Confidence 33344678999999999998776543221 222211 246899999999997321 1222223334445 5
Q ss_pred eEEEeeCcCCcchhhhhHHHHH
Q 017132 178 KVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 178 ~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
.++.+|++.|.|+.++.+.+.+
T Consensus 144 ~~~e~Sak~~~~v~e~f~~l~~ 165 (201)
T cd04107 144 GWFETSAKEGINIEEAMRFLVK 165 (201)
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 7889999999999987665543
No 357
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.33 E-value=0.0002 Score=62.83 Aligned_cols=85 Identities=19% Similarity=0.138 Sum_probs=53.5
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH-HHHHHh---cCCCeEEEEEccCCCCHHhH--HHHHHHHHHhCc-eEEEeeCcCCc
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP-LMDQWL---GNRKRILVLNREDMISMADR--NAWATYFAKQGT-KVIFSNGQLGM 188 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~-~l~~~l---~~kp~ilVlNK~DL~~~~~~--~~w~~~~~~~g~-~vi~iSa~~g~ 188 (376)
..++.+|+++.|+|+.++.+.... ++...+ .+.|.++|.||+|+.+.... ....++.+..+. .++.+|++.|.
T Consensus 73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGD 152 (169)
T ss_pred hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCc
Confidence 457999999999998766332111 222222 25799999999999754321 111122223343 45789999999
Q ss_pred chhhhhHHHHHh
Q 017132 189 GTMKLSRLAKAL 200 (376)
Q Consensus 189 gi~~L~~~l~~l 200 (376)
|+.++.+.+.+.
T Consensus 153 ~v~~lf~~l~~~ 164 (169)
T cd01892 153 SSNELFTKLATA 164 (169)
T ss_pred cHHHHHHHHHHH
Confidence 998887665443
No 358
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.33 E-value=0.00052 Score=61.06 Aligned_cols=102 Identities=14% Similarity=0.068 Sum_probs=63.0
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC--CcHHHHHHh-----cCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~--~~~~l~~~l-----~~kp~ilVlNK~DL 159 (376)
+..+.+||- ||+ .+........++.+|.++.|+|+.++... ....+..++ .+.|+++|.||+|+
T Consensus 60 ~~~~~~~D~--------~G~-~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl 130 (184)
T smart00178 60 NIKFTTFDL--------GGH-QQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDA 130 (184)
T ss_pred CEEEEEEEC--------CCC-HHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccc
Confidence 345566662 443 23334445678999999999999876322 222333333 36799999999998
Q ss_pred C---CHHhHHHHHHHHHH---------hCceEEEeeCcCCcchhhhhHHH
Q 017132 160 I---SMADRNAWATYFAK---------QGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 160 ~---~~~~~~~w~~~~~~---------~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
. +.++.......... .-..++.+|+++|.|+.++.+-|
T Consensus 131 ~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl 180 (184)
T smart00178 131 PYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWL 180 (184)
T ss_pred cCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHH
Confidence 5 33333332221110 11357889999999998876654
No 359
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.33 E-value=0.00075 Score=58.43 Aligned_cols=94 Identities=16% Similarity=0.107 Sum_probs=59.8
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc-HHH----HHHhc-CCCeEEEEEccCCCCHHh-HHHHHHHHHHh-
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLM----DQWLG-NRKRILVLNREDMISMAD-RNAWATYFAKQ- 175 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~-~~l----~~~l~-~kp~ilVlNK~DL~~~~~-~~~w~~~~~~~- 175 (376)
||+ ..........+..+|+++.++|..++.+... ..+ ..+.. ..|.++|.||+|+.+..+ .....+.+.+.
T Consensus 64 ~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~ 142 (169)
T cd04114 64 AGQ-ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQ 142 (169)
T ss_pred CCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHc
Confidence 443 3445555678899999999999876533211 111 11122 467899999999975432 12233334333
Q ss_pred CceEEEeeCcCCcchhhhhHHHH
Q 017132 176 GTKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 176 g~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
...++.+|+++|.|+.++.+.+.
T Consensus 143 ~~~~~~~Sa~~~~gv~~l~~~i~ 165 (169)
T cd04114 143 DMYYLETSAKESDNVEKLFLDLA 165 (169)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHH
Confidence 35678899999999988766554
No 360
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.32 E-value=0.0011 Score=57.73 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=64.2
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccCC
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDM 159 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL 159 (376)
..+.+|| + ||+ .+........++.+|.++.++|+.++.+.. .+..|+ ...|+++|.||+|+
T Consensus 53 ~~~~i~D---t-----~G~-~~~~~~~~~~~~~~d~il~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~pvivv~nK~Dl 121 (168)
T cd01866 53 IKLQIWD---T-----AGQ-ESFRSITRSYYRGAAGALLVYDITRRETFN--HLTSWLEDARQHSNSNMTIMLIGNKCDL 121 (168)
T ss_pred EEEEEEE---C-----CCc-HHHHHHHHHHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECccc
Confidence 4566776 1 443 334444456789999999999998654332 223332 25689999999999
Q ss_pred CCHHh--HHHHHHHHHHhCceEEEeeCcCCcchhhhhHHH
Q 017132 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 160 ~~~~~--~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
.+... ......+..+.+..++.+|++.+.|+.++...+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 122 ESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 84321 122223344556778899999999998875544
No 361
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.30 E-value=0.00046 Score=60.24 Aligned_cols=83 Identities=12% Similarity=-0.029 Sum_probs=54.7
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcch
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi 190 (376)
..+..+|.++.|+|..++.+..+. ++.....+.|.++|.||+|+........-.++....+..++.+|+++|.|+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 147 (166)
T cd00877 68 GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNF 147 (166)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCCh
Confidence 457789999999998875443221 111222268999999999997433211111222334567889999999999
Q ss_pred hhhhHHHH
Q 017132 191 MKLSRLAK 198 (376)
Q Consensus 191 ~~L~~~l~ 198 (376)
.++.+.+.
T Consensus 148 ~~~f~~l~ 155 (166)
T cd00877 148 EKPFLWLA 155 (166)
T ss_pred HHHHHHHH
Confidence 88866654
No 362
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.29 E-value=0.00033 Score=64.71 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEeEeecCCCCcchhhhhhhhcc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
+|+++|..++|||||+++|+...
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~ 24 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASA 24 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998543
No 363
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.28 E-value=0.00074 Score=61.30 Aligned_cols=85 Identities=11% Similarity=-0.057 Sum_probs=55.4
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCc
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM 188 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~ 188 (376)
....+..+|.++.|+|..++.+..+. ++.+...+.|+++|.||+|+........-.......+..++.+|++.|.
T Consensus 61 ~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~ 140 (200)
T smart00176 61 RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNY 140 (200)
T ss_pred hHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCC
Confidence 34578899999999999876443221 1222223579999999999864321111122233445678899999999
Q ss_pred chhhhhHHHH
Q 017132 189 GTMKLSRLAK 198 (376)
Q Consensus 189 gi~~L~~~l~ 198 (376)
|+.++.+.+.
T Consensus 141 ~v~~~F~~l~ 150 (200)
T smart00176 141 NFEKPFLWLA 150 (200)
T ss_pred CHHHHHHHHH
Confidence 9988755543
No 364
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.28 E-value=0.0004 Score=64.85 Aligned_cols=71 Identities=25% Similarity=0.386 Sum_probs=0.0
Q ss_pred eEEeEeecCCCCcchhhhhhhh--------------------------------------------------cccccccC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLK--------------------------------------------------RRMCPAAP 247 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~--------------------------------------------------~~~~~v~~ 247 (376)
+++++||-+++||||++|+|++ ......+.
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~ 106 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGT 106 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCC
Q ss_pred CCCceeEEEEEEe----CCeEEEEeCCCCcCCCCCcHHHHHHHHH
Q 017132 248 RPGVTRVLKWVRF----GKDLEFLDSPGIIPMRISDQAAAIKLAI 288 (376)
Q Consensus 248 ~pg~T~~~~~~~~----~~~i~l~DTpG~i~~~~~~~~~~~kla~ 288 (376)
..+++-++-.+++ ..++.|+||||+......++...+...+
T Consensus 107 ~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i 151 (240)
T smart00053 107 NKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQI 151 (240)
T ss_pred CCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHH
No 365
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.27 E-value=0.00054 Score=61.03 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=34.7
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i 273 (376)
+|+++|.+|||||||++++.+..- .-...|-...+. ..+.++. .+.+.||+|--
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~ 60 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEF-DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEeCCCch
Confidence 689999999999999999986432 111222221222 2334432 46789999963
No 366
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.27 E-value=0.0009 Score=57.41 Aligned_cols=84 Identities=13% Similarity=-0.061 Sum_probs=53.6
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh-----cCCCeEEEEEccCCCCHHhH--HHHHHHHHHhCceEEEeeCc
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL-----GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQ 185 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~~-~-l~~~l-----~~kp~ilVlNK~DL~~~~~~--~~w~~~~~~~g~~vi~iSa~ 185 (376)
...+..+|.++.|+|..++.+..+. . +..+. .+.|+++|.||+|+.+.+.. ..-....+..+.+++.+|++
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAK 146 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCC
Confidence 3567889999999998765432221 1 11111 25799999999999753321 11111222335678899999
Q ss_pred CCcchhhhhHHHH
Q 017132 186 LGMGTMKLSRLAK 198 (376)
Q Consensus 186 ~g~gi~~L~~~l~ 198 (376)
.|.|+.++.+.+.
T Consensus 147 ~~~~v~~l~~~l~ 159 (163)
T cd04136 147 SKINVDEVFADLV 159 (163)
T ss_pred CCCCHHHHHHHHH
Confidence 9999988766543
No 367
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.26 E-value=0.00091 Score=58.02 Aligned_cols=99 Identities=15% Similarity=0.204 Sum_probs=62.8
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNRED 158 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--------~~kp~ilVlNK~D 158 (376)
...+.+|| + ||+ .+........++.+|.++.|+|..++.+..+ +..++ .+.|.++|.||+|
T Consensus 50 ~~~l~i~D---t-----~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~~iiiv~nK~D 118 (166)
T cd04122 50 KIKLQIWD---T-----AGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNH--LSSWLTDARNLTNPNTVIFLIGNKAD 118 (166)
T ss_pred EEEEEEEE---C-----CCc-HHHHHHHHHHhcCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCeEEEEEECcc
Confidence 34566777 2 343 3334444567899999999999987643322 22222 2467999999999
Q ss_pred CCCHHhH--HHHHHHHHHhCceEEEeeCcCCcchhhhhHH
Q 017132 159 MISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRL 196 (376)
Q Consensus 159 L~~~~~~--~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~ 196 (376)
+...... ....+.....+..++.+|++.|.|+.++...
T Consensus 119 l~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~ 158 (166)
T cd04122 119 LEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLE 158 (166)
T ss_pred cccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 9754321 1122223344667889999999999886443
No 368
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.26 E-value=0.00067 Score=60.34 Aligned_cols=103 Identities=10% Similarity=0.078 Sum_probs=61.6
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC--CcHHHHHHhc-----CCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWLG-----NRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~--~~~~l~~~l~-----~kp~ilVlNK~DL 159 (376)
+..+.+||- ||+ .+........++.+|.++.|+|+.++.+. ...++.+.+. +.|+++|.||.|+
T Consensus 60 ~~~~~l~D~--------~G~-~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 130 (182)
T PTZ00133 60 NLKFTMWDV--------GGQ-DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDL 130 (182)
T ss_pred CEEEEEEEC--------CCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCC
Confidence 455667772 343 33444445678999999999998764321 1223333332 4789999999998
Q ss_pred CCHHhHHHHHHHHHH-----hCceEEEeeCcCCcchhhhhHHHH
Q 017132 160 ISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 160 ~~~~~~~~w~~~~~~-----~g~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
.......+..+.+.. ....++.+|+++|.|+.++.+.+.
T Consensus 131 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~ 174 (182)
T PTZ00133 131 PNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLS 174 (182)
T ss_pred CCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence 643222222222211 111344579999999988866554
No 369
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.25 E-value=0.00054 Score=62.45 Aligned_cols=56 Identities=21% Similarity=0.182 Sum_probs=34.2
Q ss_pred ceEEeEeecCCCCcchhhhhhh-hcccccccCCCCceeEEEEEEeC---CeEEEEeCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLL-KRRMCPAAPRPGVTRVLKWVRFG---KDLEFLDSPGI 272 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~-~~~~~~v~~~pg~T~~~~~~~~~---~~i~l~DTpG~ 272 (376)
.++|+++|.+|||||||+|++. +.-.....+..|.......+..+ -.+.+.||+|-
T Consensus 9 ~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~ 68 (215)
T PTZ00132 9 EFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ 68 (215)
T ss_pred CceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCc
Confidence 4689999999999999998654 32111122333333322222222 25678999995
No 370
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.25 E-value=0.0017 Score=55.27 Aligned_cols=95 Identities=13% Similarity=-0.015 Sum_probs=60.0
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc-----HHHHHHhc--CCCeEEEEEccCCCCHHh-H-HHHHHHHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD-R-NAWATYFA 173 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~-----~~l~~~l~--~kp~ilVlNK~DL~~~~~-~-~~w~~~~~ 173 (376)
+||+.. ........+..+|+++.|+|...+.+..+ ..+..... ..|+++|.||+|+.+... . +.......
T Consensus 54 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 132 (160)
T cd00876 54 TAGQEE-FSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAK 132 (160)
T ss_pred CCChHH-HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHH
Confidence 456533 33334467889999999999876542211 11222222 689999999999986321 1 12222334
Q ss_pred HhCceEEEeeCcCCcchhhhhHHHH
Q 017132 174 KQGTKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 174 ~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
+.+..++.+|++.+.|+.++.+.+.
T Consensus 133 ~~~~~~~~~S~~~~~~i~~l~~~l~ 157 (160)
T cd00876 133 EWGCPFIETSAKDNINIDEVFKLLV 157 (160)
T ss_pred HcCCcEEEeccCCCCCHHHHHHHHH
Confidence 4456788999999999988866553
No 371
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.00063 Score=65.82 Aligned_cols=95 Identities=21% Similarity=0.381 Sum_probs=68.0
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCC---CCCcHHHHHHhcCCCeEEEEEccCCCCHHh
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL---STTHPLMDQWLGNRKRILVLNREDMISMAD 164 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~---~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~ 164 (376)
=.+||.| -||| ....+.|--=..-||+.+.++|||.+. +.++..+..+++-+.+++.+||+||++-.+
T Consensus 86 RkFIiAD--------TPGH-eQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e 156 (431)
T COG2895 86 RKFIIAD--------TPGH-EQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSE 156 (431)
T ss_pred ceEEEec--------CCcH-HHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCH
Confidence 3456666 3888 455666665678899999999999865 445667888889999999999999996432
Q ss_pred --HHH----HHHHHHHhC---ceEEEeeCcCCcchh
Q 017132 165 --RNA----WATYFAKQG---TKVIFSNGQLGMGTM 191 (376)
Q Consensus 165 --~~~----w~~~~~~~g---~~vi~iSa~~g~gi~ 191 (376)
.++ +..+..+.| ..++++|+..|.++.
T Consensus 157 ~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 157 EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 222 223333445 467899999987763
No 372
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.24 E-value=0.0014 Score=66.83 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=57.3
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC----CcHHHHHHh-----cCC-CeEEEEEccCCCCHH--------h
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMDQWL-----GNR-KRILVLNREDMISMA--------D 164 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~----~~~~l~~~l-----~~k-p~ilVlNK~DL~~~~--------~ 164 (376)
-||| .++.+.+..-+..+|..+.|+|+.....+ ...+..+.+ .+. +.++++||+|+.+.. .
T Consensus 92 tPGh-~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~~~~~~i 170 (447)
T PLN00043 92 APGH-RDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEI 170 (447)
T ss_pred CCCH-HHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhHHHHHHH
Confidence 4887 56777777778999999999999874211 112222211 244 568889999987321 1
Q ss_pred HHHHHHHHHHhC-----ceEEEeeCcCCcchh
Q 017132 165 RNAWATYFAKQG-----TKVIFSNGQLGMGTM 191 (376)
Q Consensus 165 ~~~w~~~~~~~g-----~~vi~iSa~~g~gi~ 191 (376)
.++...++.+.| ..++++|+..|.|+.
T Consensus 171 ~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 171 VKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred HHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 233444455555 457899999998874
No 373
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.24 E-value=0.00085 Score=59.55 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC--CcHHHHHHh-----cCCCeEEEEEccCCCCHHhHHHHHHHHHH--
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLST--THPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK-- 174 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~--~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~w~~~~~~-- 174 (376)
||+.. ........+..+|.++.|+|..++.+. ....+...+ .+.|++++.||+|+...-......+++..
T Consensus 71 ~G~~~-~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~ 149 (190)
T cd00879 71 GGHEQ-ARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYG 149 (190)
T ss_pred CCCHH-HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccc
Confidence 45432 233334678899999999999865321 122233332 25799999999999742222222222211
Q ss_pred --------------hCceEEEeeCcCCcchhhhhHHHH
Q 017132 175 --------------QGTKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 175 --------------~g~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
....++.+|+++|.|+.++.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~ 187 (190)
T cd00879 150 TTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLS 187 (190)
T ss_pred ccccccccccccCceeEEEEEeEecCCCChHHHHHHHH
Confidence 113477899999999988876654
No 374
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.23 E-value=0.0012 Score=69.42 Aligned_cols=95 Identities=18% Similarity=0.095 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC--HHhHHHHHHHH----HHh
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS--MADRNAWATYF----AKQ 175 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~--~~~~~~w~~~~----~~~ 175 (376)
|||. .+..........+|+++.|+|+.++......+..... .+.|.++++||+|+.. .+....+...+ ...
T Consensus 143 PGhe-~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~ 221 (587)
T TIGR00487 143 PGHE-AFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDW 221 (587)
T ss_pred CCCc-chhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhc
Confidence 7874 3333444568899999999999876543333322222 3689999999999953 32232222111 011
Q ss_pred C--ceEEEeeCcCCcchhhhhHHHHH
Q 017132 176 G--TKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 176 g--~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
+ ..++++||++|.|+.+|.+.+..
T Consensus 222 ~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 222 GGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CCCceEEEEECCCCCChHHHHHhhhh
Confidence 1 35788999999999998776643
No 375
>PLN03118 Rab family protein; Provisional
Probab=97.23 E-value=0.0022 Score=58.23 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=64.5
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh------cCCCeEEEEEccCC
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL------GNRKRILVLNREDM 159 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~--l~~~l------~~kp~ilVlNK~DL 159 (376)
..+.+|| + ||+ .+........+..+|.++.|+|..++.+..+.. +...+ ...|.++|.||+|+
T Consensus 62 ~~l~l~D---t-----~G~-~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 132 (211)
T PLN03118 62 LKLTIWD---T-----AGQ-ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR 132 (211)
T ss_pred EEEEEEE---C-----CCc-hhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 4556666 2 342 333444456788999999999987654332221 11111 14578999999999
Q ss_pred CCHHhH--HHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 160 ISMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 160 ~~~~~~--~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
...... ..........+..++.+|++.|.|++++.+.+...
T Consensus 133 ~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~ 175 (211)
T PLN03118 133 ESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALK 175 (211)
T ss_pred cccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 754321 22223333456678889999999999887665543
No 376
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.23 E-value=0.00028 Score=71.06 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.6
Q ss_pred ceEEeEeecCCCCcchhhhhhhhc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+++|.+|+|||||+++|++.
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~ 27 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGV 27 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCe
Confidence 468999999999999999999863
No 377
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.22 E-value=0.0015 Score=66.61 Aligned_cols=88 Identities=20% Similarity=0.172 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCC-------CCcHHHHHHh--cCCC-eEEEEEccCCC--C--HHh----H
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLS-------TTHPLMDQWL--GNRK-RILVLNREDMI--S--MAD----R 165 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~-------~~~~~l~~~l--~~kp-~ilVlNK~DL~--~--~~~----~ 165 (376)
||| .++.+.+...+..+|+++.|+|+..+.. ....+...+. .+.| .++++||+|.. + ++. .
T Consensus 93 PGh-~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~~~~~~i~ 171 (446)
T PTZ00141 93 PGH-RDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQERYDEIK 171 (446)
T ss_pred CCh-HHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhHHHHHHHH
Confidence 897 5677788888999999999999987642 1111111222 2445 57899999943 2 221 2
Q ss_pred HHHHHHHHHhC-----ceEEEeeCcCCcchhh
Q 017132 166 NAWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (376)
Q Consensus 166 ~~w~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (376)
.+..+.+...| ..++++|+..|.|+.+
T Consensus 172 ~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 172 KEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred HHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 23333444444 3578999999998853
No 378
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.22 E-value=0.0012 Score=56.68 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=63.0
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCCC
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDMI 160 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~-----l~~~l--~~kp~ilVlNK~DL~ 160 (376)
.++.+|| + ||+ .+........++.+|.++.++|..++.+..... +..+. .+.|.++|.||+|+.
T Consensus 49 ~~~~l~D---~-----~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 49 VKLAIWD---T-----AGQ-ERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE 119 (161)
T ss_pred EEEEEEE---C-----CCc-hhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc
Confidence 4566666 2 332 333444456688999999999987654322111 11111 257799999999998
Q ss_pred CHH-hHHHHHHHHHHhCceEEEeeCcCCcchhhhhHHH
Q 017132 161 SMA-DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 161 ~~~-~~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
... ......+.....+..++++|+++|.|+.++.+.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~ 157 (161)
T cd01863 120 NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEEL 157 (161)
T ss_pred ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence 332 1222223334456778999999999998876654
No 379
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.21 E-value=0.0013 Score=60.56 Aligned_cols=84 Identities=14% Similarity=0.005 Sum_probs=53.5
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCC------------------------HHh
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMIS------------------------MAD 164 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~~--~l~~~l----~~kp~ilVlNK~DL~~------------------------~~~ 164 (376)
...+..+|+++.|+|..++.+..+. .+..+. .+.|.++|.||+||.. .++
T Consensus 62 ~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e 141 (220)
T cd04126 62 SMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLED 141 (220)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHH
Confidence 3568899999999999876543322 122222 2468999999999975 122
Q ss_pred HHHHHHHHHHh-----------CceEEEeeCcCCcchhhhhHHHH
Q 017132 165 RNAWATYFAKQ-----------GTKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 165 ~~~w~~~~~~~-----------g~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
...|.+.+... ...++.+||+.|.|+.++...+.
T Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~ 186 (220)
T cd04126 142 AKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLF 186 (220)
T ss_pred HHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHH
Confidence 22333222110 13577899999999988765544
No 380
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.20 E-value=0.00038 Score=60.30 Aligned_cols=83 Identities=14% Similarity=0.001 Sum_probs=54.3
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--H-HHHH---hcCCCeEEEEEccCCCCHHhHHH-------------HHHHHHHhC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--L-MDQW---LGNRKRILVLNREDMISMADRNA-------------WATYFAKQG 176 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~-l~~~---l~~kp~ilVlNK~DL~~~~~~~~-------------w~~~~~~~g 176 (376)
..++.+|+++.++|..++.+.... + +..+ ..+.|.++|.||+|+.+...... -.......+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 146 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIG 146 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhC
Confidence 346889999999998875432221 1 1111 12589999999999986653221 112223334
Q ss_pred c-eEEEeeCcCCcchhhhhHHHH
Q 017132 177 T-KVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 177 ~-~vi~iSa~~g~gi~~L~~~l~ 198 (376)
. .++.+|++.|.|+.++.+.+.
T Consensus 147 ~~~~~~~Sa~~~~gi~~l~~~i~ 169 (171)
T cd00157 147 AIGYMECSALTQEGVKEVFEEAI 169 (171)
T ss_pred CeEEEEeecCCCCCHHHHHHHHh
Confidence 4 788899999999988876553
No 381
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.20 E-value=0.00076 Score=57.99 Aligned_cols=53 Identities=36% Similarity=0.507 Sum_probs=34.2
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccC--CCCceeEEEEEEeCC---eEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAP--RPGVTRVLKWVRFGK---DLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~--~pg~T~~~~~~~~~~---~i~l~DTpG~ 272 (376)
||++||-++||||||++++.+.. ..-.. ..|.......+..+. .+.+.||+|-
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~ 58 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGE-FPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ 58 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS-TTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTS
T ss_pred CEEEECCCCCCHHHHHHHHHhhc-ccccccccccccccccccccccccccccccccccc
Confidence 58999999999999999999654 21111 222222222233322 4789999995
No 382
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.20 E-value=0.0013 Score=58.45 Aligned_cols=103 Identities=15% Similarity=0.101 Sum_probs=61.0
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc---CCCeEEEEEccCCCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG---NRKRILVLNREDMIS 161 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l~---~kp~ilVlNK~DL~~ 161 (376)
...+.+||- +.| .+........+..+|+++.|+|..++.+..+ ..+..+.. ....++|.||+||..
T Consensus 48 ~~~l~iwDt---~G~------~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~ 118 (182)
T cd04128 48 EITFSIWDL---GGQ------REFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFA 118 (182)
T ss_pred EEEEEEEeC---CCc------hhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 356677772 222 2223333356899999999999877654322 12222221 223478999999962
Q ss_pred ---HHh---HHHHHH-HHHHhCceEEEeeCcCCcchhhhhHHHH
Q 017132 162 ---MAD---RNAWAT-YFAKQGTKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 162 ---~~~---~~~w~~-~~~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
... ...... +....+..++.+||+.|.|+.++.+.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~ 162 (182)
T cd04128 119 DLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVL 162 (182)
T ss_pred cccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 111 112222 2233456788999999999998876554
No 383
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.20 E-value=0.0016 Score=62.00 Aligned_cols=90 Identities=22% Similarity=0.255 Sum_probs=64.4
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc---CCCeEEEEEccCCCCHHh-----------------HHHHHHHH
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG---NRKRILVLNREDMISMAD-----------------RNAWATYF 172 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~---~kp~ilVlNK~DL~~~~~-----------------~~~w~~~~ 172 (376)
.-+..++++|+|+-++|+.++-...++.+...+. +.|-++|+||+|..+... ..+|.+.|
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f 227 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKF 227 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHh
Confidence 3456799999999999999877777776655543 678999999999876431 12344433
Q ss_pred HHh--------------CceEEEeeCcCCcchhhhhHHHHHhhh
Q 017132 173 AKQ--------------GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (376)
Q Consensus 173 ~~~--------------g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (376)
... ...++++|+..|.|+++|++.|-..++
T Consensus 228 ~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 228 TDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred ccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 211 134888999999999999888755443
No 384
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.19 E-value=0.001 Score=57.64 Aligned_cols=85 Identities=13% Similarity=-0.035 Sum_probs=54.8
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH-H----HHHHh----cCCCeEEEEEccCCCCHHhH--HHHHHHHHHhCceEEEeeC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP-L----MDQWL----GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNG 184 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~-~----l~~~l----~~kp~ilVlNK~DL~~~~~~--~~w~~~~~~~g~~vi~iSa 184 (376)
..+..+|.++.|+|..++.+..+. . +.+.. .+.|+++|.||+|+.+.... ..-..+....+..++.+||
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA 147 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSA 147 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeec
Confidence 457789999999998776543221 1 11121 24799999999999763221 1111222333456788999
Q ss_pred cCCcchhhhhHHHHHh
Q 017132 185 QLGMGTMKLSRLAKAL 200 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~l 200 (376)
++|.|+.++.+.+.++
T Consensus 148 ~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 148 KTNHNVQELFQELLNL 163 (165)
T ss_pred CCCCCHHHHHHHHHhc
Confidence 9999999887766544
No 385
>PLN03127 Elongation factor Tu; Provisional
Probab=97.18 E-value=0.0025 Score=64.98 Aligned_cols=61 Identities=20% Similarity=0.121 Sum_probs=43.3
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCe-EEEEEccCCCCHHh
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKR-ILVLNREDMISMAD 164 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~-ilVlNK~DL~~~~~ 164 (376)
-|||. ++.+.+..-+..+|+++.|+|++.+......+...++. +.|. ++++||+|+++.++
T Consensus 131 tPGh~-~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~ 194 (447)
T PLN03127 131 CPGHA-DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEE 194 (447)
T ss_pred CCCcc-chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHH
Confidence 48884 56666666667899999999998876554444444432 5674 68899999997443
No 386
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.18 E-value=0.00063 Score=60.38 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=34.0
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE-EEEEeCC---eEEEEeCCCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGI 272 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~-~~~~~~~---~i~l~DTpG~ 272 (376)
.+|+++|.+|||||||++++.+.. ....-.|....+. ..+.++. .+.+.||+|-
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~ 59 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-YPETYVPTVFENYTASFEIDEQRIELSLWDTSGS 59 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CCCCcCCceEEEEEEEEEECCEEEEEEEEECCCc
Confidence 479999999999999999998643 2111122211111 1223332 4679999995
No 387
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.17 E-value=0.0032 Score=66.21 Aligned_cols=97 Identities=19% Similarity=0.127 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHh-----------------
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD----------------- 164 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~----------------- 164 (376)
||| ..+..........+|+++.|+|+.++......+...++ .+.|.++++||+|+.+...
T Consensus 77 pG~-e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 77 PGH-EAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred CCc-HhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 665 33344444567899999999999876544333333333 3689999999999974210
Q ss_pred H-HHHH-------HHHHHh-------------C--ceEEEeeCcCCcchhhhhHHHHHhh
Q 017132 165 R-NAWA-------TYFAKQ-------------G--TKVIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 165 ~-~~w~-------~~~~~~-------------g--~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
. ..+. ..+.+. + ..++++||.+|.|+.+|.+.+..+.
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0 0010 011211 1 4688999999999999987765443
No 388
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.16 E-value=0.0017 Score=58.42 Aligned_cols=84 Identities=8% Similarity=-0.061 Sum_probs=54.0
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCCCCH-HhH--HHHHHHHH-HhCceEEEeeC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISM-ADR--NAWATYFA-KQGTKVIFSNG 184 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l--~~kp~ilVlNK~DL~~~-~~~--~~w~~~~~-~~g~~vi~iSa 184 (376)
..+..+|+++.|+|..++.+..+. .+.... .+.|+++|.||+|+.+. ... ....+... ..+..++.+|+
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 145 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSA 145 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecC
Confidence 567899999999998765332211 111111 25899999999999763 211 11112222 22356788999
Q ss_pred cCCcchhhhhHHHHH
Q 017132 185 QLGMGTMKLSRLAKA 199 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~ 199 (376)
++|.|+.++.+.+.+
T Consensus 146 ~~g~gv~~l~~~l~~ 160 (198)
T cd04147 146 KDNENVLEVFKELLR 160 (198)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999988776554
No 389
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.15 E-value=0.0011 Score=57.16 Aligned_cols=88 Identities=13% Similarity=-0.029 Sum_probs=55.7
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCCCCHHhH--HHHHHHHHHhCceEEE
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIF 181 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~~--~~w~~~~~~~g~~vi~ 181 (376)
.......+..+|.++.|+|..++.+..+. .+..+. .+.|+++|.||+|+...... .......++.+..++.
T Consensus 63 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04175 63 TAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLE 142 (164)
T ss_pred hhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEE
Confidence 33334568889999999998665432211 112221 25799999999999753211 1111222344677899
Q ss_pred eeCcCCcchhhhhHHHH
Q 017132 182 SNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 182 iSa~~g~gi~~L~~~l~ 198 (376)
+||+.|.|+.++...+.
T Consensus 143 ~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 143 TSAKAKINVNEIFYDLV 159 (164)
T ss_pred eeCCCCCCHHHHHHHHH
Confidence 99999999988765543
No 390
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.15 E-value=0.00046 Score=72.75 Aligned_cols=57 Identities=28% Similarity=0.366 Sum_probs=39.7
Q ss_pred eEEeEeecCCCCcchhhhhhhhccccc--------cc------CCCCceeEEEEEEe-----C---CeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCP--------AA------PRPGVTRVLKWVRF-----G---KDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~--------v~------~~pg~T~~~~~~~~-----~---~~i~l~DTpG~i~ 274 (376)
.+++++|.+|+|||||+++|+...... +. ...|+|.+.+.+.+ + ..+.|+||||...
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 369999999999999999998642111 11 22478877544332 2 2578999999974
No 391
>PRK10218 GTP-binding protein; Provisional
Probab=97.15 E-value=0.00058 Score=71.92 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=40.5
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccc---------------cCCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA---------------APRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v---------------~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
.+|+++|..++|||||+++|+....... +...|+|.......+ +..+.++||||.-.
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d 80 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD 80 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch
Confidence 4699999999999999999986322211 224577766544333 44689999999753
No 392
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.14 E-value=0.0015 Score=70.58 Aligned_cols=97 Identities=15% Similarity=0.076 Sum_probs=62.2
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH--HhHHHHHHHH----HH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM--ADRNAWATYF----AK 174 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~--~~~~~w~~~~----~~ 174 (376)
.|||. .+..........+|+++.|+|+.++......+..... .+.|+++++||+|+... .........+ ..
T Consensus 344 TPGhe-~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~ 422 (787)
T PRK05306 344 TPGHE-AFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEE 422 (787)
T ss_pred CCCCc-cchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHH
Confidence 38884 3344444668889999999999876443333322322 36899999999999642 2222111111 11
Q ss_pred hC--ceEEEeeCcCCcchhhhhHHHHHh
Q 017132 175 QG--TKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 175 ~g--~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
.| ..++++|+++|.|+..|.+.+...
T Consensus 423 ~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 423 WGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred hCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 12 468899999999999987776543
No 393
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.14 E-value=0.0021 Score=67.79 Aligned_cols=85 Identities=24% Similarity=0.259 Sum_probs=56.6
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH---hHHHHHHHHHHh--
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA---DRNAWATYFAKQ-- 175 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~---~~~~w~~~~~~~-- 175 (376)
-||| ..+..++...+..+|.++.|+|+..+.......+.... .+.|.++|+||+|+.... ...+..+.+...
T Consensus 71 TPGh-~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~ 149 (594)
T TIGR01394 71 TPGH-ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGA 149 (594)
T ss_pred CCCH-HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcc
Confidence 3888 45667778889999999999999875432222222222 367999999999986432 233344444322
Q ss_pred -----CceEEEeeCcCCc
Q 017132 176 -----GTKVIFSNGQLGM 188 (376)
Q Consensus 176 -----g~~vi~iSa~~g~ 188 (376)
..++++.|++.|.
T Consensus 150 ~~e~l~~pvl~~SA~~g~ 167 (594)
T TIGR01394 150 DDEQLDFPIVYASGRAGW 167 (594)
T ss_pred ccccccCcEEechhhcCc
Confidence 3468899999986
No 394
>PLN03110 Rab GTPase; Provisional
Probab=97.13 E-value=0.0032 Score=57.60 Aligned_cols=100 Identities=12% Similarity=0.129 Sum_probs=64.2
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccCC
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDM 159 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL 159 (376)
..+.+|| + ||+ .+........+..++.++.|+|..++.+..+ +..|+ .+.|+++|.||+|+
T Consensus 61 ~~l~l~D---t-----~G~-~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~--~~~~~~~~~~~~~~~~piiiv~nK~Dl 129 (216)
T PLN03110 61 VKAQIWD---T-----AGQ-ERYRAITSAYYRGAVGALLVYDITKRQTFDN--VQRWLRELRDHADSNIVIMMAGNKSDL 129 (216)
T ss_pred EEEEEEE---C-----CCc-HHHHHHHHHHhCCCCEEEEEEECCChHHHHH--HHHHHHHHHHhCCCCCeEEEEEEChhc
Confidence 4566666 2 343 3444445567899999999999987644322 22332 25789999999998
Q ss_pred CCHHhH-HHHHHHH-HHhCceEEEeeCcCCcchhhhhHHHH
Q 017132 160 ISMADR-NAWATYF-AKQGTKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 160 ~~~~~~-~~w~~~~-~~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
...... ......+ ...+..++.+|++.|.|+.++.+.+.
T Consensus 130 ~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~ 170 (216)
T PLN03110 130 NHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL 170 (216)
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 643321 1111222 23467889999999999988866553
No 395
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.13 E-value=0.0018 Score=58.82 Aligned_cols=102 Identities=13% Similarity=0.095 Sum_probs=62.8
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh-cCCCeEEEEEccCCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL-GNRKRILVLNREDMI 160 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~-----l~~~l-~~kp~ilVlNK~DL~ 160 (376)
..++-+|| ++.| .+........+..+|.++.|||..++.+..+.. +.+.. .+.|.++|.||+||.
T Consensus 48 ~v~l~iwD---taGq------e~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~ 118 (202)
T cd04120 48 KIRLQIWD---TAGQ------ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE 118 (202)
T ss_pred EEEEEEEe---CCCc------hhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 35666777 2222 334444456789999999999998765443321 11111 257899999999996
Q ss_pred CHHhHH-HHHHHH-HHh-CceEEEeeCcCCcchhhhhHHH
Q 017132 161 SMADRN-AWATYF-AKQ-GTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 161 ~~~~~~-~w~~~~-~~~-g~~vi~iSa~~g~gi~~L~~~l 197 (376)
..++.. .-...+ .+. +..++.+||+.|.|+.++.+.+
T Consensus 119 ~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 119 TDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred cccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 533211 111222 222 4667889999999998875444
No 396
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.12 E-value=0.0019 Score=56.29 Aligned_cols=83 Identities=16% Similarity=-0.002 Sum_probs=53.1
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHHH-H---hcCCCeEEEEEccCCCCHHh-H-------------HHHHHHHHHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQ-W---LGNRKRILVLNREDMISMAD-R-------------NAWATYFAKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~~-~---l~~kp~ilVlNK~DL~~~~~-~-------------~~w~~~~~~~ 175 (376)
..+..+|+++.++|..++.+..+. .+.. + ..+.|.++|.||+|+.+... . ..-.+..+..
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 144 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRI 144 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHc
Confidence 457899999999998776433221 1111 1 23689999999999975321 0 0111122334
Q ss_pred Cc-eEEEeeCcCCcchhhhhHHHH
Q 017132 176 GT-KVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 176 g~-~vi~iSa~~g~gi~~L~~~l~ 198 (376)
+. .++.+|+++|.|+.++.+.+.
T Consensus 145 ~~~~~~e~Sa~~~~~v~~lf~~l~ 168 (174)
T smart00174 145 GAVKYLECSALTQEGVREVFEEAI 168 (174)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHH
Confidence 43 678899999999988866543
No 397
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.12 E-value=0.00076 Score=60.05 Aligned_cols=54 Identities=26% Similarity=0.311 Sum_probs=33.0
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE-EEEEeC---CeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG---KDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~-~~~~~~---~~i~l~DTpG~i 273 (376)
+|+++|.+|||||||+|+|..... .-...+.+..+. ..+.++ ..+.+.||+|..
T Consensus 3 Ki~ivG~~g~GKStLl~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 60 (187)
T cd04129 3 KLVIVGDGACGKTSLLSVFTLGEF-PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQE 60 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEECCEEEEEEEEECCCCh
Confidence 699999999999999999984321 111112111111 112222 246788999975
No 398
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.12 E-value=0.0021 Score=52.94 Aligned_cols=102 Identities=17% Similarity=0.018 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHH-------HHhcCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-------QWLGNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~-------~~l~~kp~ilVlNK~DL 159 (376)
+.++.+|| +||+. .........+..+|.++.|+|+..+......... ....+.|.++|+||+|+
T Consensus 44 ~~~~~l~D--------~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~ 114 (157)
T cd00882 44 KVKLQIWD--------TAGQE-RFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDL 114 (157)
T ss_pred EEEEEEEe--------cCChH-HHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEecccc
Confidence 44556666 24433 2233335678899999999999876543332211 11236899999999999
Q ss_pred CCHHhHHHH---HHHHHHhCceEEEeeCcCCcchhhhhHHH
Q 017132 160 ISMADRNAW---ATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 160 ~~~~~~~~w---~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
......... .......+..++.+|+..+.|+.++.+.+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 155 (157)
T cd00882 115 PEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEEL 155 (157)
T ss_pred ccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHH
Confidence 876543332 11222334678899999999988876654
No 399
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.11 E-value=0.0024 Score=56.95 Aligned_cols=88 Identities=10% Similarity=0.001 Sum_probs=55.3
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHH---h----cCCCeEEEEEccCCCCHHhH--HHHHHHHHHhCceE
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L----GNRKRILVLNREDMISMADR--NAWATYFAKQGTKV 179 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~---l----~~kp~ilVlNK~DL~~~~~~--~~w~~~~~~~g~~v 179 (376)
.......+..+|.++.|||..++.+..+ ..+..+ . .+.|.++|.||+|+...... ..-.+.....+..+
T Consensus 61 ~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~ 140 (190)
T cd04144 61 TALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEF 140 (190)
T ss_pred HHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEE
Confidence 3333467899999999999876543221 111111 1 24689999999999643221 11112223345678
Q ss_pred EEeeCcCCcchhhhhHHHH
Q 017132 180 IFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~ 198 (376)
+.+||+.|.|+.++.+.+.
T Consensus 141 ~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 141 IEASAKTNVNVERAFYTLV 159 (190)
T ss_pred EEecCCCCCCHHHHHHHHH
Confidence 8999999999998866554
No 400
>PTZ00369 Ras-like protein; Provisional
Probab=97.10 E-value=0.0018 Score=57.75 Aligned_cols=87 Identities=10% Similarity=-0.076 Sum_probs=54.6
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEE
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIF 181 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l--~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~ 181 (376)
.......+..+|.++.|+|..++.+..+. ++.+.. .+.|.++|.||+|+.+... ...........+.+++.
T Consensus 67 ~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e 146 (189)
T PTZ00369 67 SAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLE 146 (189)
T ss_pred hhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEE
Confidence 33334567899999999998776432111 111111 1468999999999864321 11122222334567889
Q ss_pred eeCcCCcchhhhhHHH
Q 017132 182 SNGQLGMGTMKLSRLA 197 (376)
Q Consensus 182 iSa~~g~gi~~L~~~l 197 (376)
+|++.|.|+.++.+.+
T Consensus 147 ~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 147 TSAKQRVNVDEAFYEL 162 (189)
T ss_pred eeCCCCCCHHHHHHHH
Confidence 9999999998875544
No 401
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.10 E-value=0.00077 Score=58.75 Aligned_cols=101 Identities=14% Similarity=-0.012 Sum_probs=59.1
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh---cCCCeEEEEEccCCCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL---GNRKRILVLNREDMIS 161 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~--~~~l~~~l---~~kp~ilVlNK~DL~~ 161 (376)
+..+.+||- ||+ .+........+..+|.++.|+|..++.+.. ...+..+. .+.|+++|.||+|+..
T Consensus 43 ~~~l~i~Dt--------~G~-~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~ 113 (164)
T cd04162 43 DAIMELLEI--------GGS-QNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPA 113 (164)
T ss_pred CeEEEEEEC--------CCC-cchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC
Confidence 455666762 232 223333346789999999999987764221 22233343 3689999999999875
Q ss_pred HHhHHHHHHH-----H-HHhCceEEEeeCcC------CcchhhhhHH
Q 017132 162 MADRNAWATY-----F-AKQGTKVIFSNGQL------GMGTMKLSRL 196 (376)
Q Consensus 162 ~~~~~~w~~~-----~-~~~g~~vi~iSa~~------g~gi~~L~~~ 196 (376)
........+. + .+.+..++.+|++. +.|+.++.+.
T Consensus 114 ~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~ 160 (164)
T cd04162 114 ARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQ 160 (164)
T ss_pred CCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHH
Confidence 4333222111 1 22344566677776 6676665443
No 402
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.09 E-value=0.0019 Score=68.10 Aligned_cols=80 Identities=21% Similarity=0.144 Sum_probs=54.9
Q ss_pred hhcCeEEEEEecCCCCCCCcHHH-HHHh-cCCCeEEEEEccCCCCHHhHHHHHHHH-HHhCceEEEeeCcCCcchhhhhH
Q 017132 119 KLMDVVIEVRDARIPLSTTHPLM-DQWL-GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (376)
Q Consensus 119 dr~dlILeV~DaR~p~~~~~~~l-~~~l-~~kp~ilVlNK~DL~~~~~~~~w~~~~-~~~g~~vi~iSa~~g~gi~~L~~ 195 (376)
+.+|+|+.|+|+.... ++..+ .+.. .+.|.++|+||+|+.++.....-.+.+ +..|.+++++|+++|.|++++.+
T Consensus 71 ~~aDvvI~VvDat~le--r~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 71 EKPDLVVNVVDASNLE--RNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKD 148 (591)
T ss_pred cCCCEEEEEecCCcch--hhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 4789999999997632 22222 2222 378999999999997544322112222 34467899999999999999887
Q ss_pred HHHHh
Q 017132 196 LAKAL 200 (376)
Q Consensus 196 ~l~~l 200 (376)
.+.+.
T Consensus 149 ~i~~~ 153 (591)
T TIGR00437 149 AIRKA 153 (591)
T ss_pred HHHHH
Confidence 76543
No 403
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.08 E-value=0.0021 Score=56.46 Aligned_cols=84 Identities=10% Similarity=-0.088 Sum_probs=55.3
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh--cCCCeEEEEEccCCCCHHhH--HHHHHHHHHhCceEEEeeC
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL--GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNG 184 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~~~-----l~~~l--~~kp~ilVlNK~DL~~~~~~--~~w~~~~~~~g~~vi~iSa 184 (376)
....+..+|.++.|+|..++.+..+.. +.+.. .+.|+++|.||+|+...... ..-.+..++.+..++.+|+
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa 146 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSA 146 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEec
Confidence 345678899999999998776543321 22221 25799999999998643211 1111222345677888999
Q ss_pred cCCcchhhhhHHH
Q 017132 185 QLGMGTMKLSRLA 197 (376)
Q Consensus 185 ~~g~gi~~L~~~l 197 (376)
+.|.|+.++.+.+
T Consensus 147 ~~~~~v~~~f~~l 159 (172)
T cd04141 147 ALRHYIDDAFHGL 159 (172)
T ss_pred CCCCCHHHHHHHH
Confidence 9999998875544
No 404
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.07 E-value=0.0032 Score=54.91 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=52.9
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcHH--HHHH---h--cCCCeEEEEEccCCCCHHhH-HHHHHHH-HHhCceEEEeeC
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTHPL--MDQW---L--GNRKRILVLNREDMISMADR-NAWATYF-AKQGTKVIFSNG 184 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~~~--l~~~---l--~~kp~ilVlNK~DL~~~~~~-~~w~~~~-~~~g~~vi~iSa 184 (376)
....+..+|.++.|+|..++.+..+.. +..+ . .+.|+++|.||+|+...... ......+ ......++.+|+
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (170)
T cd04115 69 VQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSA 148 (170)
T ss_pred HHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEec
Confidence 345678999999999998765432221 1111 1 24799999999998654321 1122222 233456788999
Q ss_pred cCCcchhhhhHHHHHhh
Q 017132 185 QLGMGTMKLSRLAKALA 201 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~l~ 201 (376)
+.+.+...+.+....+.
T Consensus 149 ~~~~~~~~i~~~f~~l~ 165 (170)
T cd04115 149 KDPSENDHVEAIFMTLA 165 (170)
T ss_pred cCCcCCCCHHHHHHHHH
Confidence 98554444555554443
No 405
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=97.07 E-value=0.00026 Score=71.61 Aligned_cols=83 Identities=22% Similarity=0.349 Sum_probs=56.7
Q ss_pred eEEeEeecCCCCcchhhhhhhhccc-----ccccCCCCceeEEEEEE--eCCeEEEEeCCCCcCCC-C---CcHHHHHHH
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRM-----CPAAPRPGVTRVLKWVR--FGKDLEFLDSPGIIPMR-I---SDQAAAIKL 286 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~-----~~v~~~pg~T~~~~~~~--~~~~i~l~DTpG~i~~~-~---~~~~~~~kl 286 (376)
.-|+.||.||+||+++||++...-. ..-++.||+|+....+. +...-.+.||||++.+. . -..++-..+
T Consensus 310 ~~v~~vg~t~a~~e~~~~~~~~~~~a~~~~~~e~~vPgtTLg~~ri~~i~~~~~w~YDTPG~~~~~q~~~llt~eEl~~v 389 (572)
T KOG1249|consen 310 GPVAAVGRTFAGSEELINAMAKELHADVEALAEEPVPGTTLGIRRIEGIFKRGAWLYDTPGVLNPNQILSLLTSEELLNV 389 (572)
T ss_pred cchHHhhhhhhccchhhhhhhhhhccchhccccCCCCcccccceeeeccccccceeecCCCccChhhhhhhccHHHhhhc
Confidence 4489999999999999999984322 23578999999866544 34456789999998642 1 123444445
Q ss_pred HHhccccccccChh
Q 017132 287 AICDDIGERSYDVA 300 (376)
Q Consensus 287 a~~~~i~~~~~~~~ 300 (376)
+....+.++++...
T Consensus 390 ~p~~~lrprtf~vk 403 (572)
T KOG1249|consen 390 TPRRVLRPRTFRVK 403 (572)
T ss_pred CcccccccceEEcC
Confidence 55555666665544
No 406
>PLN03108 Rab family protein; Provisional
Probab=97.05 E-value=0.004 Score=56.72 Aligned_cols=90 Identities=10% Similarity=0.056 Sum_probs=56.9
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEe
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFS 182 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~~--~l~~~l----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~i 182 (376)
.......+..+|.++.|+|...+.+..+. .+..+. ...|+++|.||+|+..... ...-.++..+.+..++.+
T Consensus 69 ~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 148 (210)
T PLN03108 69 RSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEA 148 (210)
T ss_pred HHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEE
Confidence 33344667889999999999775433221 122111 2578999999999975321 112222334456778889
Q ss_pred eCcCCcchhhhh-HHHHHh
Q 017132 183 NGQLGMGTMKLS-RLAKAL 200 (376)
Q Consensus 183 Sa~~g~gi~~L~-~~l~~l 200 (376)
|++.+.|+.++. ...+.+
T Consensus 149 Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 149 SAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 999999998854 444444
No 407
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=97.05 E-value=0.0014 Score=71.10 Aligned_cols=81 Identities=21% Similarity=0.084 Sum_probs=57.4
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHhHHHHHHHH-HHhCceEEEeeCcCCcchhhhhH
Q 017132 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYF-AKQGTKVIFSNGQLGMGTMKLSR 195 (376)
Q Consensus 119 dr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~w~~~~-~~~g~~vi~iSa~~g~gi~~L~~ 195 (376)
+.+|+|+.|+|+.... ++..+...+ .++|+++|+||+|+.++.....-.+.+ ++.|.+++++|+++|.|++++.+
T Consensus 84 ~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~ 161 (772)
T PRK09554 84 GDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKL 161 (772)
T ss_pred cCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHH
Confidence 5899999999997643 233332222 378999999999998554322222333 34578899999999999999888
Q ss_pred HHHHhh
Q 017132 196 LAKALA 201 (376)
Q Consensus 196 ~l~~l~ 201 (376)
.+.+..
T Consensus 162 ~I~~~~ 167 (772)
T PRK09554 162 AIDRHQ 167 (772)
T ss_pred HHHHhh
Confidence 776553
No 408
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.05 E-value=0.0011 Score=60.91 Aligned_cols=82 Identities=12% Similarity=-0.031 Sum_probs=53.4
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcch
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi 190 (376)
.....+|.+|.|||..++.+..+. ++.+...+.|+++|.||+|+........-..+.+..+..++.+||+.|.|+
T Consensus 81 ~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i 160 (219)
T PLN03071 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF 160 (219)
T ss_pred HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCH
Confidence 457899999999998876433221 111122367999999999996432111111333344567888999999999
Q ss_pred hhhhHHH
Q 017132 191 MKLSRLA 197 (376)
Q Consensus 191 ~~L~~~l 197 (376)
.++.+.+
T Consensus 161 ~~~f~~l 167 (219)
T PLN03071 161 EKPFLYL 167 (219)
T ss_pred HHHHHHH
Confidence 8875544
No 409
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.05 E-value=0.00097 Score=59.92 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=36.7
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i 273 (376)
.++|+++|..+||||||++++.... ......|..+.+. ..+.++. .+.+.||+|--
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~-~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~ 66 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGS-TESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 4789999999999999999998643 1111112233333 2333332 46789999974
No 410
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.05 E-value=0.0029 Score=56.20 Aligned_cols=90 Identities=10% Similarity=0.037 Sum_probs=56.5
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc-CCCeEEEEEccCCCCHHhH--HHHHHHHHHhCceEEE
Q 017132 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMADR--NAWATYFAKQGTKVIF 181 (376)
Q Consensus 110 ~~k~l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l~-~kp~ilVlNK~DL~~~~~~--~~w~~~~~~~g~~vi~ 181 (376)
........++.+|.++.|+|..++.+..+. ++..... ..|.++|.||+|+.+.... ..-..+....+..++.
T Consensus 62 ~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 141 (188)
T cd04125 62 FRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFE 141 (188)
T ss_pred HHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEE
Confidence 333445678999999999998775432211 1111111 4688999999999843211 1111222334567889
Q ss_pred eeCcCCcchhhhhHHHHH
Q 017132 182 SNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 182 iSa~~g~gi~~L~~~l~~ 199 (376)
+|++.|.|+.++.+.+.+
T Consensus 142 vSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 142 TSAKQSINVEEAFILLVK 159 (188)
T ss_pred EeCCCCCCHHHHHHHHHH
Confidence 999999999887655443
No 411
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.04 E-value=0.0013 Score=56.64 Aligned_cols=84 Identities=13% Similarity=-0.081 Sum_probs=53.6
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCCCCHHhH--HHHHHHHHHhCceEEEeeC
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNG 184 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l--~~kp~ilVlNK~DL~~~~~~--~~w~~~~~~~g~~vi~iSa 184 (376)
....+..+|.++.|+|..++.+..+. ++.+.. .+.|.++|.||+|+.+.... ..........+..++.+|+
T Consensus 66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (163)
T cd04176 66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSA 145 (163)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecC
Confidence 33567889999999998775432221 111111 26899999999999653221 1111222233567788999
Q ss_pred cCCcchhhhhHHH
Q 017132 185 QLGMGTMKLSRLA 197 (376)
Q Consensus 185 ~~g~gi~~L~~~l 197 (376)
++|.|+.++.+.+
T Consensus 146 ~~~~~v~~l~~~l 158 (163)
T cd04176 146 KSKTMVNELFAEI 158 (163)
T ss_pred CCCCCHHHHHHHH
Confidence 9999998876554
No 412
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.02 E-value=0.0012 Score=55.34 Aligned_cols=52 Identities=23% Similarity=0.186 Sum_probs=37.9
Q ss_pred CCCeEEEEEccCCCCHHhHHHHHHHHHHhC-ceEEEeeCcCCcchhhhhHHHH
Q 017132 147 NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 147 ~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
+.|.++++||+|+............+...+ ..++.+|+..|.|+.++.+.++
T Consensus 108 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 108 NVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred CCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 679999999999987543333444444333 5688899999999988876653
No 413
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.01 E-value=0.0035 Score=56.63 Aligned_cols=83 Identities=12% Similarity=-0.052 Sum_probs=52.9
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh----cCCCeEEEEEccCCCCHHhHHH--HHHHHH-HhCceEEEee
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL----GNRKRILVLNREDMISMADRNA--WATYFA-KQGTKVIFSN 183 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~-----l~~~l----~~kp~ilVlNK~DL~~~~~~~~--w~~~~~-~~g~~vi~iS 183 (376)
..+..+|+++.|+|..++.+..... +.+.. .+.|+++|.||+|+...+.... ...+.. ..+..++.+|
T Consensus 76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S 155 (198)
T cd04142 76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECS 155 (198)
T ss_pred hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEec
Confidence 4578999999999998764332211 11111 3479999999999965322111 111122 2356788999
Q ss_pred CcCCcchhhhhHHHH
Q 017132 184 GQLGMGTMKLSRLAK 198 (376)
Q Consensus 184 a~~g~gi~~L~~~l~ 198 (376)
++.|.|+.++.+.+.
T Consensus 156 ak~g~~v~~lf~~i~ 170 (198)
T cd04142 156 AKYNWHILLLFKELL 170 (198)
T ss_pred CCCCCCHHHHHHHHH
Confidence 999999988755443
No 414
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.01 E-value=0.00081 Score=62.10 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=33.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE-EEEEeCC---eEEEEeCCCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGI 272 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~-~~~~~~~---~i~l~DTpG~ 272 (376)
.+|++||.+|||||||++++++.. ....-.|.+.-+. ..+.++. .+.|.||+|-
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~-f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~ 59 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDA-YPGSYVPTVFENYTASFEIDKRRIELNMWDTSGS 59 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-CCCccCCccccceEEEEEECCEEEEEEEEeCCCc
Confidence 479999999999999999998643 1111222221111 1223322 4678999996
No 415
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0034 Score=60.19 Aligned_cols=99 Identities=19% Similarity=0.209 Sum_probs=64.4
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC----CcHHHHHHhcCCCeEEEEEccCCCCHHhHHH----HHHHHHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMDQWLGNRKRILVLNREDMISMADRNA----WATYFAK 174 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~----~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~----w~~~~~~ 174 (376)
-||| .-++..|..=..-.|-.|.|++|..|.-. .+..-.+.++-+.+++|-||+||++++...+ ..++.+.
T Consensus 93 aPGH-e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkG 171 (415)
T COG5257 93 APGH-ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKG 171 (415)
T ss_pred CCch-HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhcc
Confidence 4898 44444444333445666888888765322 2222234456789999999999999875332 1122211
Q ss_pred ---hCceEEEeeCcCCcchhhhhHHHHHhhh
Q 017132 175 ---QGTKVIFSNGQLGMGTMKLSRLAKALAS 202 (376)
Q Consensus 175 ---~g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (376)
.+.+++++||.++.+++.|.+.+.+.-+
T Consensus 172 t~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 172 TVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred cccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 2357999999999999999888876543
No 416
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=96.99 E-value=0.00071 Score=59.87 Aligned_cols=55 Identities=25% Similarity=0.510 Sum_probs=38.5
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 272 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~ 272 (376)
...+|.++|.+|+||||++|.|.......+.++-|.. ...+.. +..+.+.|.+|=
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~--~~~i~~~~~~~~~~d~gG~ 68 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFN--IEEIKYKGYSLTIWDLGGQ 68 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEE--EEEEEETTEEEEEEEESSS
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccccCcccccc--cceeeeCcEEEEEEecccc
Confidence 3578999999999999999999865433333333322 333334 447889999996
No 417
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.99 E-value=0.0019 Score=56.18 Aligned_cols=102 Identities=14% Similarity=0.131 Sum_probs=62.1
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~--~~~l~~~l-----~~kp~ilVlNK~DL 159 (376)
+.++.+|| + ||+ .+........+..+|.++.|+|+..+.... ...+...+ ...|.+++.||+|+
T Consensus 57 ~~~~~~~D---~-----~G~-~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 127 (173)
T cd04155 57 GFKLNVWD---I-----GGQ-RAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDL 127 (173)
T ss_pred CEEEEEEE---C-----CCC-HHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCC
Confidence 45566776 2 333 333444556788999999999987643211 11222222 25799999999999
Q ss_pred CCHHhHHHHHHHHHHh-----CceEEEeeCcCCcchhhhhHHH
Q 017132 160 ISMADRNAWATYFAKQ-----GTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 160 ~~~~~~~~w~~~~~~~-----g~~vi~iSa~~g~gi~~L~~~l 197 (376)
......+...+.+.-. ...++.+|+++|.|+.++.+.+
T Consensus 128 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l 170 (173)
T cd04155 128 ATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWV 170 (173)
T ss_pred ccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHH
Confidence 7654333333322111 1246789999999988876544
No 418
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.97 E-value=0.005 Score=68.36 Aligned_cols=98 Identities=18% Similarity=0.150 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHh-----------------
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD----------------- 164 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~----------------- 164 (376)
|||. .+..........+|+++.|+|+..+......+....+ .+.|.++|+||+|+.+...
T Consensus 534 PGhe-~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~ 612 (1049)
T PRK14845 534 PGHE-AFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQH 612 (1049)
T ss_pred CCcH-HHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHH
Confidence 7763 3333333456779999999999876544433333333 2679999999999975211
Q ss_pred -HHHHH-------HHHHHhC---------------ceEEEeeCcCCcchhhhhHHHHHhhh
Q 017132 165 -RNAWA-------TYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS 202 (376)
Q Consensus 165 -~~~w~-------~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (376)
.++.. ..+.+.| ..++++||.+|.|+..|...+..+.+
T Consensus 613 ~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 613 ALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 11110 0112221 36788999999999999877755443
No 419
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.96 E-value=0.0011 Score=67.56 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=40.7
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccc------------------------------cccCCCCceeEEEEEEe---CCe
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMC------------------------------PAAPRPGVTRVLKWVRF---GKD 263 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~------------------------------~v~~~pg~T~~~~~~~~---~~~ 263 (376)
.++|+++|..++|||||+.+|+..... ..+-..|+|.+.....+ +..
T Consensus 7 ~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~~ 86 (446)
T PTZ00141 7 HINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYY 86 (446)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCeE
Confidence 478999999999999999999741100 01123578888765554 446
Q ss_pred EEEEeCCCCc
Q 017132 264 LEFLDSPGII 273 (376)
Q Consensus 264 i~l~DTpG~i 273 (376)
+.|+||||-.
T Consensus 87 i~lIDtPGh~ 96 (446)
T PTZ00141 87 FTIIDAPGHR 96 (446)
T ss_pred EEEEECCChH
Confidence 8999999953
No 420
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=96.96 E-value=0.0012 Score=60.09 Aligned_cols=54 Identities=30% Similarity=0.363 Sum_probs=35.0
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeC---CeEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG---KDLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~---~~i~l~DTpG~i 273 (376)
.|.++|..|||||||++++.... ....-.+..+.+. ..+.++ -.+.+.||+|--
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~-f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe 60 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDT-FCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQE 60 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCC-CCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCch
Confidence 58899999999999999998543 2111123233332 233443 246799999963
No 421
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.95 E-value=0.001 Score=70.11 Aligned_cols=56 Identities=25% Similarity=0.415 Sum_probs=38.3
Q ss_pred EEeEeecCCCCcchhhhhhhhccccc-----c----------cCCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCP-----A----------APRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~-----v----------~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
+|+|+|..++|||||+++|+...... + +..-|+|.......+ +..+.++||||...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~D 76 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHAD 76 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHH
Confidence 59999999999999999998532111 1 112466666432222 55789999999853
No 422
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.94 E-value=0.0059 Score=60.82 Aligned_cols=99 Identities=22% Similarity=0.237 Sum_probs=69.6
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc---HHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHh----
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH---PLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ---- 175 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~---~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~---- 175 (376)
-||| .+..+.+-.-+.-.|..+.|+|+.++..... ..+.+++..+.-++|+||+|.+++....+..+.....
T Consensus 57 vpgh-~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~ 135 (447)
T COG3276 57 VPGH-PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLA 135 (447)
T ss_pred CCCc-HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccc
Confidence 3777 4445555566778899999999976554433 3344555666779999999999876554443333221
Q ss_pred CceEEEeeCcCCcchhhhhHHHHHhhh
Q 017132 176 GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (376)
Q Consensus 176 g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (376)
..+++.+|+..|.|+.+|++.|..+..
T Consensus 136 ~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 136 NAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred cccccccccccCCCHHHHHHHHHHhhh
Confidence 245677899999999999999998874
No 423
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=96.91 E-value=0.0016 Score=59.21 Aligned_cols=56 Identities=30% Similarity=0.338 Sum_probs=35.4
Q ss_pred eEEeEeecCCCCcchhhhhhhhccccc-ccCCCCceeEEEEEEeC------C--eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFG------K--DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pg~T~~~~~~~~~------~--~i~l~DTpG~i 273 (376)
++|.++|-++||||||+|++.+..-.. ..+..|.+.....+.++ . .+.+.||+|--
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 369999999999999999999643111 11222333333333331 2 36799999973
No 424
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=96.91 E-value=0.00092 Score=60.60 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.1
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
+|+++|..++|||||+.+|++.
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999754
No 425
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=96.91 E-value=0.0032 Score=54.48 Aligned_cols=88 Identities=11% Similarity=0.053 Sum_probs=54.9
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHH---Hh-cCCCeEEEEEccCCCCHHhH-HHHHHHH-HHhCceEEEe
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQ---WL-GNRKRILVLNREDMISMADR-NAWATYF-AKQGTKVIFS 182 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~~--~l~~---~l-~~kp~ilVlNK~DL~~~~~~-~~w~~~~-~~~g~~vi~i 182 (376)
..........+|.++.|+|..++.+.... .+.. .. .+.|.++|.||.|+...... ......+ +..+...+.+
T Consensus 63 ~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 142 (161)
T cd04117 63 QTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFET 142 (161)
T ss_pred HhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEE
Confidence 33344567899999999998765432211 1111 11 14689999999999754321 1112222 2345677889
Q ss_pred eCcCCcchhhhhHHHH
Q 017132 183 NGQLGMGTMKLSRLAK 198 (376)
Q Consensus 183 Sa~~g~gi~~L~~~l~ 198 (376)
|++.|.|+.++.+.|.
T Consensus 143 Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 143 SACTNSNIKESFTRLT 158 (161)
T ss_pred eCCCCCCHHHHHHHHH
Confidence 9999999988765543
No 426
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.87 E-value=0.0078 Score=63.38 Aligned_cols=94 Identities=18% Similarity=0.152 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHh-----------------
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD----------------- 164 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~----------------- 164 (376)
||| ..+.......+..+|+++.|+|+..+......+...++ .+.|.++++||+|+.+...
T Consensus 79 PG~-e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 79 PGH-EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred CCh-HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 676 33444444567889999999999875433333322332 3689999999999863210
Q ss_pred -HH-------HHHHHHHHhC---------------ceEEEeeCcCCcchhhhhHHHH
Q 017132 165 -RN-------AWATYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 165 -~~-------~w~~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
.. +...++.+.| ..++++|+.+|.|+.+|.+.+.
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~ 214 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLA 214 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHH
Confidence 00 0111222222 3578899999999988876654
No 427
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=96.87 E-value=0.0053 Score=62.48 Aligned_cols=79 Identities=23% Similarity=0.203 Sum_probs=52.4
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcchhhh
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKL 193 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~~~l~~~l-~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi~~L 193 (376)
...++.+|+++.|+|+..+.+..+..+.... .++|+++|+||+|+... .... +....+..++.+|+++ .|+.++
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~-~~~~---~~~~~~~~~~~vSak~-~gI~~~ 351 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKIN-SLEF---FVSSKVLNSSNLSAKQ-LKIKAL 351 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCc-chhh---hhhhcCCceEEEEEec-CCHHHH
Confidence 4678999999999999887654433233222 36899999999999754 2221 1223355677889987 467666
Q ss_pred hHHHH
Q 017132 194 SRLAK 198 (376)
Q Consensus 194 ~~~l~ 198 (376)
.+.+.
T Consensus 352 ~~~L~ 356 (442)
T TIGR00450 352 VDLLT 356 (442)
T ss_pred HHHHH
Confidence 54443
No 428
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.86 E-value=0.0077 Score=61.35 Aligned_cols=97 Identities=18% Similarity=0.138 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHH-HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHhHHHHHHHHHHhC----
Q 017132 104 PGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQG---- 176 (376)
Q Consensus 104 PGh~~~~~k~l~-~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g---- 176 (376)
|||.. .-.|. .=-+-+|+++.|+|+.+.......+-.... .+-|.++.+||+|..+..- ......+.+.|
T Consensus 63 PGHeA--Ft~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np-~~v~~el~~~gl~~E 139 (509)
T COG0532 63 PGHEA--FTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANP-DKVKQELQEYGLVPE 139 (509)
T ss_pred CcHHH--HHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCH-HHHHHHHHHcCCCHh
Confidence 89843 33444 336889999999999987665544433333 2789999999999984321 11122233333
Q ss_pred -----ceEEEeeCcCCcchhhhhHHHHHhhhh
Q 017132 177 -----TKVIFSNGQLGMGTMKLSRLAKALASD 203 (376)
Q Consensus 177 -----~~vi~iSa~~g~gi~~L~~~l~~l~~~ 203 (376)
..++++||++|.|+.+|...+--+.+.
T Consensus 140 ~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev 171 (509)
T COG0532 140 EWGGDVIFVPVSAKTGEGIDELLELILLLAEV 171 (509)
T ss_pred hcCCceEEEEeeccCCCCHHHHHHHHHHHHHH
Confidence 246789999999999998776555443
No 429
>PLN03126 Elongation factor Tu; Provisional
Probab=96.86 E-value=0.0066 Score=62.39 Aligned_cols=85 Identities=16% Similarity=0.107 Sum_probs=55.6
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHhHH-----HHHHHHHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMADRN-----AWATYFAK 174 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp-~ilVlNK~DL~~~~~~~-----~w~~~~~~ 174 (376)
-||| .++.+.+..-+..+|+++.|+|+..+......+...+. .+.| .++++||+|+++.++.. +...++.+
T Consensus 151 tPGh-~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~ 229 (478)
T PLN03126 151 CPGH-ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSS 229 (478)
T ss_pred CCCH-HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHh
Confidence 4898 45667777778899999999999977544333333332 2566 56789999999754321 22333444
Q ss_pred hC-----ceEEEeeCcCCc
Q 017132 175 QG-----TKVIFSNGQLGM 188 (376)
Q Consensus 175 ~g-----~~vi~iSa~~g~ 188 (376)
.| ..++++|+..|.
T Consensus 230 ~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 230 YEFPGDDIPIISGSALLAL 248 (478)
T ss_pred cCCCcCcceEEEEEccccc
Confidence 33 457788887763
No 430
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=96.85 E-value=0.0017 Score=57.62 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=34.2
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeC---CeEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~---~~i~l~DTpG~i 273 (376)
++|.++|.++||||||++++.... ......| |.-+.. .+.++ -++.+.||+|--
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~~~~~~-Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~ 60 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FPTDYIP-TVFDNFSANVSVDGNTVNLGLWDTAGQE 60 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CCCCCCC-cceeeeEEEEEECCEEEEEEEEECCCCc
Confidence 479999999999999999998543 2111122 111211 12232 246899999974
No 431
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=96.84 E-value=0.0015 Score=57.10 Aligned_cols=81 Identities=14% Similarity=-0.031 Sum_probs=52.7
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHH-HHh---cCCCeEEEEEccCCCCHHh--------------HHHHHHHHHHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMD-QWL---GNRKRILVLNREDMISMAD--------------RNAWATYFAKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~-~~l---~~kp~ilVlNK~DL~~~~~--------------~~~w~~~~~~~ 175 (376)
..+..+|.++.|+|..++.+..+. .+. .+. ...|.++|.||+|+.+... ...-..+.++.
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 146 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKI 146 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHh
Confidence 457899999999999876543221 111 121 2578999999999975321 11111222334
Q ss_pred Cc-eEEEeeCcCCcchhhhhHH
Q 017132 176 GT-KVIFSNGQLGMGTMKLSRL 196 (376)
Q Consensus 176 g~-~vi~iSa~~g~gi~~L~~~ 196 (376)
+. .++.+|+++|.|+.++.+.
T Consensus 147 ~~~~~~e~Sa~~~~~v~~lf~~ 168 (173)
T cd04130 147 GACEYIECSALTQKNLKEVFDT 168 (173)
T ss_pred CCCeEEEEeCCCCCCHHHHHHH
Confidence 54 7889999999999887654
No 432
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.0073 Score=61.64 Aligned_cols=96 Identities=20% Similarity=0.148 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHH-HHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHHHh-----
Q 017132 104 PGHIAKTEKELK-DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQ----- 175 (376)
Q Consensus 104 PGh~~~~~k~l~-~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~~~----- 175 (376)
|||+. ...|. +=..-+|+|+.|+.|.++....-.+-.+..+ +-|+++.+||+|..... ...-...+...
T Consensus 209 PGHaA--F~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~-pekv~~eL~~~gi~~E 285 (683)
T KOG1145|consen 209 PGHAA--FSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGAN-PEKVKRELLSQGIVVE 285 (683)
T ss_pred CcHHH--HHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCC-HHHHHHHHHHcCccHH
Confidence 99964 44455 3477899999999998876655444434333 78999999999965322 12222333333
Q ss_pred --C--ceEEEeeCcCCcchhhhhHHHHHhhh
Q 017132 176 --G--TKVIFSNGQLGMGTMKLSRLAKALAS 202 (376)
Q Consensus 176 --g--~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (376)
| .+++.+|+.+|.|+..|.+.+--++.
T Consensus 286 ~~GGdVQvipiSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 286 DLGGDVQVIPISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred HcCCceeEEEeecccCCChHHHHHHHHHHHH
Confidence 3 36889999999999999876654443
No 433
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.82 E-value=0.0019 Score=60.04 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=34.0
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE-EEEEeC---CeEEEEeCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFG---KDLEFLDSPGI 272 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~-~~~~~~---~~i~l~DTpG~ 272 (376)
..+|.+||-++||||||++++.+.. ......|-+.-+. ..+.++ -.+.|.||+|-
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~-F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~ 71 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDC-YPETYVPTVFENYTAGLETEEQRVELSLWDTSGS 71 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCC-CCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCc
Confidence 4689999999999999999998643 1111112111111 112222 24789999995
No 434
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.80 E-value=0.006 Score=55.61 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=62.9
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHH---hc--CCCeEEEEEccCCC
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---LG--NRKRILVLNREDMI 160 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~--~l~~~---l~--~kp~ilVlNK~DL~ 160 (376)
..+.+|| + ||+ .+........++.+|.++.|+|..++.+..+. .+..+ .. ..+.++|.||+|+.
T Consensus 52 ~~l~i~D---t-----~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 52 IKLQLWD---T-----AGQ-ERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred EEEEEEe---C-----Ccc-hhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 3455666 2 443 33344444678999999999998876432221 11111 11 24578899999997
Q ss_pred CHHhH--HHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHH
Q 017132 161 SMADR--NAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 161 ~~~~~--~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
..... ..-..+.+..+..++.+|++.|.|+.++.+.+.+
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~ 163 (211)
T cd04111 123 SQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQ 163 (211)
T ss_pred cccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 53221 1111222334567888999999999988776654
No 435
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.80 E-value=0.0076 Score=55.64 Aligned_cols=76 Identities=20% Similarity=0.218 Sum_probs=49.9
Q ss_pred HHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeE-EEEEccCCCCHHh-HHHHHHHHHH-------hCceEE
Q 017132 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRI-LVLNREDMISMAD-RNAWATYFAK-------QGTKVI 180 (376)
Q Consensus 112 k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~i-lVlNK~DL~~~~~-~~~w~~~~~~-------~g~~vi 180 (376)
..+.+.++.+|+++.|+|+..+.......+..++. ++|.+ +|+||+|+.+... .....+.+++ .+.+++
T Consensus 95 ~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~ 174 (225)
T cd01882 95 NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLF 174 (225)
T ss_pred HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence 44456679999999999998776665555555543 56754 5999999984332 2222222211 236889
Q ss_pred EeeCcCC
Q 017132 181 FSNGQLG 187 (376)
Q Consensus 181 ~iSa~~g 187 (376)
++|+++.
T Consensus 175 ~iSa~~~ 181 (225)
T cd01882 175 YLSGIVH 181 (225)
T ss_pred EEeeccC
Confidence 9998765
No 436
>PTZ00416 elongation factor 2; Provisional
Probab=96.79 E-value=0.0015 Score=71.63 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=26.3
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCcee
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR 253 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~ 253 (376)
.+|+++|..++|||||+++|+....+......|.|+
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~ 55 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDAR 55 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCcee
Confidence 479999999999999999998754433333444443
No 437
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.013 Score=52.36 Aligned_cols=120 Identities=15% Similarity=0.082 Sum_probs=80.1
Q ss_pred cccCCcEEEEcCCCCCcc-----cChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc---C--CCeE
Q 017132 84 ADLDADLYYWTKSLRPVQ-----WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG---N--RKRI 151 (376)
Q Consensus 84 ~~~~~~~vi~~~~L~~~q-----w~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l~---~--kp~i 151 (376)
...++|++..+-.|.... |--..+.++.-.+...+..+++++-|+|..+..+..+ .-|+.... . --++
T Consensus 53 ATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~ 132 (221)
T KOG0094|consen 53 ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIF 132 (221)
T ss_pred ceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEE
Confidence 345666666655554432 6655568888888899999999999999876554433 22333332 1 2356
Q ss_pred EEEEccCCCCHHhHHHHH--HHHHHhCceEEEeeCcCCcchhhhhHHHHHhhhh
Q 017132 152 LVLNREDMISMADRNAWA--TYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASD 203 (376)
Q Consensus 152 lVlNK~DL~~~~~~~~w~--~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~~ 203 (376)
+|-||.||+++++...-. ..-++.+...+.+|++.|.+++++-+.+......
T Consensus 133 LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~ 186 (221)
T KOG0094|consen 133 LVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPG 186 (221)
T ss_pred EEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccC
Confidence 889999999987543221 2223445667778999999999887776665544
No 438
>PRK10218 GTP-binding protein; Provisional
Probab=96.78 E-value=0.0062 Score=64.32 Aligned_cols=85 Identities=20% Similarity=0.229 Sum_probs=56.5
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH--hcCCCeEEEEEccCCCCH---HhHHHHHHHHHH----
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW--LGNRKRILVLNREDMISM---ADRNAWATYFAK---- 174 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~--l~~kp~ilVlNK~DL~~~---~~~~~w~~~~~~---- 174 (376)
||| ..+...+...+..+|.++.|+|+..........+... ..+.|.++++||+|+... +...+..+.|..
T Consensus 76 PG~-~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~ 154 (607)
T PRK10218 76 PGH-ADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDAT 154 (607)
T ss_pred CCc-chhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcc
Confidence 666 3455566778999999999999987543333333222 237899999999998642 233444444432
Q ss_pred ---hCceEEEeeCcCCcc
Q 017132 175 ---QGTKVIFSNGQLGMG 189 (376)
Q Consensus 175 ---~g~~vi~iSa~~g~g 189 (376)
...+++++|+.+|.+
T Consensus 155 ~~~~~~PVi~~SA~~G~~ 172 (607)
T PRK10218 155 DEQLDFPIVYASALNGIA 172 (607)
T ss_pred ccccCCCEEEeEhhcCcc
Confidence 125689999999874
No 439
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.76 E-value=0.0079 Score=58.18 Aligned_cols=96 Identities=19% Similarity=0.234 Sum_probs=56.2
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHhcCCCeEEEEEccCCCCHHhHHHHHHH--------H
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWLGNRKRILVLNREDMISMADRNAWATY--------F 172 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~--l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~--------~ 172 (376)
+||| ..+.+.+---..-.|+.+.|+|+..+......+ +...+..+++++|+||+|+.+..++..-.+. +
T Consensus 77 CPGH-asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtL 155 (522)
T KOG0461|consen 77 CPGH-ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTL 155 (522)
T ss_pred CCCc-HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHH
Confidence 6998 444444433334456667777766543332221 2222335789999999999987544332222 2
Q ss_pred HHhC----ceEEEeeCcCC----cchhhhhHHHHH
Q 017132 173 AKQG----TKVIFSNGQLG----MGTMKLSRLAKA 199 (376)
Q Consensus 173 ~~~g----~~vi~iSa~~g----~gi~~L~~~l~~ 199 (376)
+..+ .+++.+|+..| .++.+|++.+++
T Consensus 156 e~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s 190 (522)
T KOG0461|consen 156 ESTGFDGNSPIVEVSAADGYFKEEMIQELKEALES 190 (522)
T ss_pred HhcCcCCCCceeEEecCCCccchhHHHHHHHHHHH
Confidence 2222 46889999988 566666666543
No 440
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=96.76 E-value=0.0033 Score=55.41 Aligned_cols=83 Identities=13% Similarity=-0.033 Sum_probs=53.4
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCCHHhH-------------HHHHHHHH-Hh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR-------------NAWATYFA-KQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~~~l----~~kp~ilVlNK~DL~~~~~~-------------~~w~~~~~-~~ 175 (376)
..+..+|.++.|+|..++.+..+. .+...+ .+.|.++|.||+|+.+..+. .+....+. +.
T Consensus 68 ~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~ 147 (175)
T cd01874 68 LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL 147 (175)
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh
Confidence 467899999999999876543322 122112 25799999999998653221 11112222 23
Q ss_pred C-ceEEEeeCcCCcchhhhhHHHH
Q 017132 176 G-TKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 176 g-~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
+ ..++.+||++|.|+.++.+.+.
T Consensus 148 ~~~~~~e~SA~tg~~v~~~f~~~~ 171 (175)
T cd01874 148 KAVKYVECSALTQKGLKNVFDEAI 171 (175)
T ss_pred CCcEEEEecCCCCCCHHHHHHHHH
Confidence 4 4688899999999988765543
No 441
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=96.75 E-value=0.0018 Score=67.24 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=19.4
Q ss_pred eEEeEeecCCCCcchhhhhhh
Q 017132 218 VRAGIVGYPNVGKSSLINRLL 238 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~ 238 (376)
.+|+|+|.+|+|||||+++|+
T Consensus 12 RniaiiGh~~aGKTTL~e~Ll 32 (527)
T TIGR00503 12 RTFAIISHPDAGKTTITEKVL 32 (527)
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 469999999999999999986
No 442
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=96.74 E-value=0.0013 Score=71.09 Aligned_cols=57 Identities=25% Similarity=0.330 Sum_probs=37.4
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccc---------c------ccCCCCceeEEEEEE----e---CCeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMC---------P------AAPRPGVTRVLKWVR----F---GKDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~---------~------v~~~pg~T~~~~~~~----~---~~~i~l~DTpG~i~ 274 (376)
.+|+++|..++|||||+++|+..... . .....|.|.+..... . +..+.++||||...
T Consensus 20 rnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 20 RNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 47999999999999999999742110 0 011245665532211 1 34689999999974
No 443
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=96.73 E-value=0.0026 Score=56.74 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=34.5
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~ 272 (376)
..+|.++|-++||||||++++.... ......-|.-+. ..+.++. .+.+.||+|-
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~--f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~ 63 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDC--FPENYVPTVFENYTASFEIDTQRIELSLWDTSGS 63 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC--CCCccCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 4689999999999999999998643 112211111111 1223332 4789999996
No 444
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=96.73 E-value=0.005 Score=56.61 Aligned_cols=84 Identities=17% Similarity=0.005 Sum_probs=54.2
Q ss_pred Hhh-hcCeEEEEEecCCCCCCCcH-H-HHHHh-----cCCCeEEEEEccCCCCHHhH--HHHHHHHHHhCceEEEeeCcC
Q 017132 117 QLK-LMDVVIEVRDARIPLSTTHP-L-MDQWL-----GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQL 186 (376)
Q Consensus 117 vid-r~dlILeV~DaR~p~~~~~~-~-l~~~l-----~~kp~ilVlNK~DL~~~~~~--~~w~~~~~~~g~~vi~iSa~~ 186 (376)
.+. .+|+++.|+|..++.+..+. + +..+. .+.|.++|.||+|+...... ..........+..++.+|++.
T Consensus 68 ~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~ 147 (221)
T cd04148 68 CMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGL 147 (221)
T ss_pred HhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCC
Confidence 345 89999999999876443211 1 11111 25799999999999764321 111122223356788999999
Q ss_pred CcchhhhhHHHHHh
Q 017132 187 GMGTMKLSRLAKAL 200 (376)
Q Consensus 187 g~gi~~L~~~l~~l 200 (376)
|.|+.++.+.+...
T Consensus 148 ~~gv~~l~~~l~~~ 161 (221)
T cd04148 148 QHNVDELLEGIVRQ 161 (221)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999887665443
No 445
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.72 E-value=0.0083 Score=55.78 Aligned_cols=104 Identities=12% Similarity=0.064 Sum_probs=63.2
Q ss_pred cCCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCC
Q 017132 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDM 159 (376)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~------~l~~~l~~kp~ilVlNK~DL 159 (376)
...++.+||- +.| ..........+..+|+++.|+|..++.+..+. ++.+.....|.++|.||+||
T Consensus 59 ~~v~l~iwDT---aG~------e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL 129 (232)
T cd04174 59 QRVELSLWDT---SGS------PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDL 129 (232)
T ss_pred EEEEEEEEeC---CCc------hhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECccc
Confidence 3456777772 223 33333333568999999999999876554321 12222235789999999998
Q ss_pred CCH------------H--hHHHHHHHHHHhCc-eEEEeeCcCCc-chhhhhHHHH
Q 017132 160 ISM------------A--DRNAWATYFAKQGT-KVIFSNGQLGM-GTMKLSRLAK 198 (376)
Q Consensus 160 ~~~------------~--~~~~w~~~~~~~g~-~vi~iSa~~g~-gi~~L~~~l~ 198 (376)
... . ...+..++-.+.+. ..+.+||+.|. |+.++-+.+.
T Consensus 130 ~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~ 184 (232)
T cd04174 130 RTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSAS 184 (232)
T ss_pred ccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHH
Confidence 531 0 11122233344565 57789999997 7888755543
No 446
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=96.72 E-value=0.0077 Score=52.21 Aligned_cols=102 Identities=9% Similarity=0.033 Sum_probs=62.1
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh--------cCCCeEEEEEc
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL--------GNRKRILVLNR 156 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~--~l~~~l--------~~kp~ilVlNK 156 (376)
...+.+|| .||+ .+........+..+|.++.++|..++.+.... .+..+. .+.|.++|.||
T Consensus 53 ~~~l~i~D--------~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK 123 (170)
T cd04116 53 FVTLQIWD--------TAGQ-ERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNK 123 (170)
T ss_pred EEEEEEEe--------CCCh-HHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 34556666 2454 33444444678999999999998765432221 111111 13589999999
Q ss_pred cCCCCHHh-HHHHHHHHHHhC-ceEEEeeCcCCcchhhhhHHH
Q 017132 157 EDMISMAD-RNAWATYFAKQG-TKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 157 ~DL~~~~~-~~~w~~~~~~~g-~~vi~iSa~~g~gi~~L~~~l 197 (376)
+|+..... .....++..+.+ ..++.+|++.|.|+.++.+.+
T Consensus 124 ~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~ 166 (170)
T cd04116 124 NDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEA 166 (170)
T ss_pred ccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHH
Confidence 99964321 122223334444 367889999999988775543
No 447
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=96.68 E-value=0.0084 Score=56.22 Aligned_cols=85 Identities=16% Similarity=0.030 Sum_probs=54.6
Q ss_pred HhhhcCeEEEEEecCCCCCCCcH--HHHHHh-------------cCCCeEEEEEccCCCCHHh--HHHHHHHHHH-hCce
Q 017132 117 QLKLMDVVIEVRDARIPLSTTHP--LMDQWL-------------GNRKRILVLNREDMISMAD--RNAWATYFAK-QGTK 178 (376)
Q Consensus 117 vidr~dlILeV~DaR~p~~~~~~--~l~~~l-------------~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~-~g~~ 178 (376)
.+..+|+++.|||..++.+..+. .+..+. .+.|.++|.||+|+..... ..+..+.+.. .+..
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA 147 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence 46789999999998765432111 111111 2579999999999975221 1222222221 2356
Q ss_pred EEEeeCcCCcchhhhhHHHHHhh
Q 017132 179 VIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
++.+|+++|.|+.++.+.+..+.
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh
Confidence 88999999999999877776554
No 448
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=96.66 E-value=0.003 Score=64.40 Aligned_cols=94 Identities=22% Similarity=0.208 Sum_probs=65.3
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc-HHHHHH-hcCCCeEEEEEccCCCC--HHhH-HHHHHHHHHhCc
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PLMDQW-LGNRKRILVLNREDMIS--MADR-NAWATYFAKQGT 177 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~-~~l~~~-l~~kp~ilVlNK~DL~~--~~~~-~~w~~~~~~~g~ 177 (376)
-||| ..+.-+....+.-||=+|.|+||..+....- ..+... ..+...|.|+||+|+-. ++.+ ....+.|.....
T Consensus 132 TPGH-vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~ 210 (650)
T KOG0462|consen 132 TPGH-VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPA 210 (650)
T ss_pred CCCc-ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCcc
Confidence 4888 4566777788999999999999986543221 112222 24788999999999964 3333 233344544557
Q ss_pred eEEEeeCcCCcchhhhhHHH
Q 017132 178 KVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 178 ~vi~iSa~~g~gi~~L~~~l 197 (376)
+++++||+.|.|+.++.+.+
T Consensus 211 ~~i~vSAK~G~~v~~lL~AI 230 (650)
T KOG0462|consen 211 EVIYVSAKTGLNVEELLEAI 230 (650)
T ss_pred ceEEEEeccCccHHHHHHHH
Confidence 89999999999998875544
No 449
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=96.65 E-value=0.0019 Score=67.06 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=0.0
Q ss_pred EEeEeecCCCCcchhhhhhhh---------------------cccccccCCCCceeEEEEEEe---CCeEEEEeCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLK---------------------RRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPG 271 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~---------------------~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG 271 (376)
+|+|+|.+|+|||||.++|+. .+....+..-|.|.......+ +..+.++||||
T Consensus 12 ni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 12 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
No 450
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=96.65 E-value=0.0072 Score=59.84 Aligned_cols=89 Identities=25% Similarity=0.291 Sum_probs=61.9
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCC----------CCcHHHHHHhcCCCeEEEEEccCCCCHHh--H----H
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS----------TTHPLMDQWLGNRKRILVLNREDMISMAD--R----N 166 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~----------~~~~~l~~~l~~kp~ilVlNK~DL~~~~~--~----~ 166 (376)
.||| +.+.+++-.-..++|+-+.|+|++.+.. ..+..+.+.++-..+|+++||+|+.+-.+ . .
T Consensus 92 aPGH-rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~rf~ei~~ 170 (428)
T COG5256 92 APGH-RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEERFEEIVS 170 (428)
T ss_pred CCch-HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHHHHHHHH
Confidence 4896 7777777777899999999999998731 12234556667788999999999997332 1 1
Q ss_pred HHHHHHHHhC-----ceEEEeeCcCCcchhh
Q 017132 167 AWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (376)
Q Consensus 167 ~w~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (376)
+...+++..| ...+++|+.+|.++.+
T Consensus 171 ~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 171 EVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred HHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 1222223334 3478899999988765
No 451
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=96.64 E-value=0.0046 Score=54.46 Aligned_cols=82 Identities=17% Similarity=-0.002 Sum_probs=52.3
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCCHHh-H-------------HHHHHHHHHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD-R-------------NAWATYFAKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~~~l----~~kp~ilVlNK~DL~~~~~-~-------------~~w~~~~~~~ 175 (376)
..+..+|.++.|+|..++.+..+. .+...+ .+.|.++|.||+||.+... . .+-.+..++.
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 147 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 147 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 467899999999999876543332 121111 2579999999999964221 0 0111112233
Q ss_pred C-ceEEEeeCcCCcchhhhhHHH
Q 017132 176 G-TKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 176 g-~~vi~iSa~~g~gi~~L~~~l 197 (376)
+ ..++.+||+.|.|+.++.+.+
T Consensus 148 ~~~~~~e~Sa~~~~~i~~~f~~l 170 (174)
T cd01871 148 GAVKYLECSALTQKGLKTVFDEA 170 (174)
T ss_pred CCcEEEEecccccCCHHHHHHHH
Confidence 4 367789999999998876554
No 452
>PRK13351 elongation factor G; Reviewed
Probab=96.63 E-value=0.002 Score=69.23 Aligned_cols=57 Identities=23% Similarity=0.350 Sum_probs=36.9
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccc-----cc------cC------CCCceeEEEEE--Ee-CCeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMC-----PA------AP------RPGVTRVLKWV--RF-GKDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~-----~v------~~------~pg~T~~~~~~--~~-~~~i~l~DTpG~i~ 274 (376)
.+|+++|..|+|||||+++|+..... .+ .+ .-|.|...... .. +..+.++||||...
T Consensus 9 rni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 9 RNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred cEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 47999999999999999999753211 01 11 13444442221 12 45789999999863
No 453
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=96.63 E-value=0.0034 Score=56.16 Aligned_cols=55 Identities=18% Similarity=0.161 Sum_probs=33.7
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccc-cccCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
++|.++|-+|||||||++++....-. ...+..|..- ...+.++. .+.+.||+|--
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e 62 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQE 62 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCch
Confidence 68999999999999999999854310 1111112111 11122332 47889999963
No 454
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.002 Score=67.33 Aligned_cols=83 Identities=20% Similarity=0.081 Sum_probs=58.9
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHH-HHHHHHHhCceEEEeeCcCCcchhhhhHHH
Q 017132 119 KLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 119 dr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~-w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
++.|+|+.|+||..-......-++-+..++|.++++|++|.+.+...+- -.+..+..|.+++++++++|.|++++++.+
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i 159 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAI 159 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHH
Confidence 6779999999998643333333333345899999999999987653221 122334568999999999999998887766
Q ss_pred HHhh
Q 017132 198 KALA 201 (376)
Q Consensus 198 ~~l~ 201 (376)
-++.
T Consensus 160 ~~~~ 163 (653)
T COG0370 160 IELA 163 (653)
T ss_pred HHhc
Confidence 5443
No 455
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=96.61 E-value=0.0037 Score=54.23 Aligned_cols=52 Identities=29% Similarity=0.250 Sum_probs=32.7
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeE--EEEEEeCC---eEEEEeCCCCc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~--~~~~~~~~---~i~l~DTpG~i 273 (376)
+|+++|.+|||||||++++....- ....+ +|-+ ...+.++. .+.+.||+|--
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f--~~~~~-~~~~~~~~~i~~~~~~~~l~i~D~~g~~ 58 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSY--VQLES-PEGGRFKKEVLVDGQSHLLLIRDEGGAP 58 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCC--CCCCC-CCccceEEEEEECCEEEEEEEEECCCCC
Confidence 699999999999999998875421 11111 1111 12233332 36789999984
No 456
>PLN00023 GTP-binding protein; Provisional
Probab=96.61 E-value=0.0037 Score=60.74 Aligned_cols=56 Identities=32% Similarity=0.449 Sum_probs=37.1
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccc-cccCCCCceeEEEEEEeC--------------C--eEEEEeCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG--------------K--DLEFLDSPGI 272 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pg~T~~~~~~~~~--------------~--~i~l~DTpG~ 272 (376)
.+||.++|..+||||||++++.+..-. ...+..|.+.....+.++ . .+.|.||+|=
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq 93 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH 93 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence 478999999999999999999964321 122333444333333332 1 2789999995
No 457
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=96.61 E-value=0.0045 Score=53.88 Aligned_cols=83 Identities=17% Similarity=0.089 Sum_probs=52.1
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCCCCHHhHHH-----------HH---HHHHHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMADRNA-----------WA---TYFAKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~------~l~~~l~~kp~ilVlNK~DL~~~~~~~~-----------w~---~~~~~~ 175 (376)
..+..+|+++.++|..++.+..+. .+.....+.|.++|.||+|+.+...... |. +.....
T Consensus 68 ~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~ 147 (175)
T cd01870 68 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKI 147 (175)
T ss_pred cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHc
Confidence 357889999999998765432221 1111123789999999999875432110 11 111122
Q ss_pred C-ceEEEeeCcCCcchhhhhHHHH
Q 017132 176 G-TKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 176 g-~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
+ ..++.+|++.|.|+.++.+.+.
T Consensus 148 ~~~~~~~~Sa~~~~~v~~lf~~l~ 171 (175)
T cd01870 148 GAFGYMECSAKTKEGVREVFEMAT 171 (175)
T ss_pred CCcEEEEeccccCcCHHHHHHHHH
Confidence 3 3688899999999998876654
No 458
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=96.57 E-value=0.0076 Score=53.92 Aligned_cols=84 Identities=15% Similarity=0.006 Sum_probs=53.6
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHH--HHH----HhcCCCeEEEEEccCCCCHHhH-------------HHHHHHH-HHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPL--MDQ----WLGNRKRILVLNREDMISMADR-------------NAWATYF-AKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~--l~~----~l~~kp~ilVlNK~DL~~~~~~-------------~~w~~~~-~~~ 175 (376)
.....+|.++.|+|..++.+..+.. +.. ...+.|+++|.||.||...... ......+ ++.
T Consensus 70 ~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 149 (191)
T cd01875 70 LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQI 149 (191)
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 5688999999999998765432221 111 1136799999999999643210 0111122 233
Q ss_pred C-ceEEEeeCcCCcchhhhhHHHHH
Q 017132 176 G-TKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 176 g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
+ ..++.+||+.|.|+.++.+.+.+
T Consensus 150 ~~~~~~e~SAk~g~~v~e~f~~l~~ 174 (191)
T cd01875 150 HAVKYLECSALNQDGVKEVFAEAVR 174 (191)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH
Confidence 4 46788999999999887655543
No 459
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=96.57 E-value=0.015 Score=50.98 Aligned_cols=85 Identities=14% Similarity=0.002 Sum_probs=54.0
Q ss_pred HHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL 186 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~ 186 (376)
.....+|.++.++|..+..+... ..+..++ .+.|.++|.||+|+...+. ...+.......+..++.+|++.
T Consensus 68 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (180)
T cd04137 68 KYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARE 147 (180)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 56778999999998876432111 1111121 2569999999999974322 1122233334456788999999
Q ss_pred CcchhhhhHHHHHh
Q 017132 187 GMGTMKLSRLAKAL 200 (376)
Q Consensus 187 g~gi~~L~~~l~~l 200 (376)
+.|+.++.+.+.+.
T Consensus 148 ~~gv~~l~~~l~~~ 161 (180)
T cd04137 148 NENVEEAFELLIEE 161 (180)
T ss_pred CCCHHHHHHHHHHH
Confidence 99998886665443
No 460
>COG2229 Predicted GTPase [General function prediction only]
Probab=96.56 E-value=0.017 Score=51.09 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=62.2
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--C-CCeEEEEEccCCCCHHhHHHHHHHHHHh--Cc
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--N-RKRILVLNREDMISMADRNAWATYFAKQ--GT 177 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~-kp~ilVlNK~DL~~~~~~~~w~~~~~~~--g~ 177 (376)
+||| .++.-.+.-..+.++-.+.++|.+.+......++..++. + .|.++..||.||-+..-.+...+++... ..
T Consensus 75 tPGq-~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~ 153 (187)
T COG2229 75 TPGQ-ERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSV 153 (187)
T ss_pred CCCc-HHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCC
Confidence 5887 444444445567788888889999888775555555543 3 7899999999998654444444555444 57
Q ss_pred eEEEeeCcCCcchhhh
Q 017132 178 KVIFSNGQLGMGTMKL 193 (376)
Q Consensus 178 ~vi~iSa~~g~gi~~L 193 (376)
+++..++..+.|..+.
T Consensus 154 ~vi~~~a~e~~~~~~~ 169 (187)
T COG2229 154 PVIEIDATEGEGARDQ 169 (187)
T ss_pred ceeeeecccchhHHHH
Confidence 7888899888776543
No 461
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=96.56 E-value=0.0036 Score=68.73 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=21.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhccc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRM 242 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~ 242 (376)
.+|+|+|..++|||||+++|+....
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g 44 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAG 44 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 4699999999999999999986543
No 462
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=96.55 E-value=0.008 Score=54.22 Aligned_cols=81 Identities=15% Similarity=-0.051 Sum_probs=53.2
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHH--HHHH----hcCCCeEEEEEccCCCCH-------------------H--hHHHHH
Q 017132 117 QLKLMDVVIEVRDARIPLSTTHPL--MDQW----LGNRKRILVLNREDMISM-------------------A--DRNAWA 169 (376)
Q Consensus 117 vidr~dlILeV~DaR~p~~~~~~~--l~~~----l~~kp~ilVlNK~DL~~~-------------------~--~~~~w~ 169 (376)
.+..+|+++.|+|..++.+..+.. +... ....|.++|.||+||... . ...+..
T Consensus 84 ~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~ 163 (195)
T cd01873 84 AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGR 163 (195)
T ss_pred cCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHH
Confidence 578999999999987765433221 1111 235789999999998631 0 011222
Q ss_pred HHHHHhCceEEEeeCcCCcchhhhhHHH
Q 017132 170 TYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 170 ~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
+.-++.|...+.+||+.|.|+.++-+.+
T Consensus 164 ~~a~~~~~~~~E~SAkt~~~V~e~F~~~ 191 (195)
T cd01873 164 AVAKELGIPYYETSVVTQFGVKDVFDNA 191 (195)
T ss_pred HHHHHhCCEEEEcCCCCCCCHHHHHHHH
Confidence 2234456778889999999998875544
No 463
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.54 E-value=0.01 Score=56.38 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS 161 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~ 161 (376)
|||. .+..++...+..+|+++.|+|+..+.......+.+.. .++|+++++||+|+..
T Consensus 72 PG~~-df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 72 PGHV-DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred CCcH-HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 7875 4556677889999999999999876554444444433 3689999999999874
No 464
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=96.53 E-value=0.0065 Score=52.98 Aligned_cols=92 Identities=10% Similarity=0.090 Sum_probs=54.8
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~--~~~l~~~l-----~~kp~ilVlNK~DL 159 (376)
+..+.+|| .||+ .+........+..+|.++.|+|+.++.+.. ...+..++ .++|+++|.||+|+
T Consensus 42 ~~~~~i~D--------~~G~-~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl 112 (167)
T cd04161 42 KYEVCIFD--------LGGG-ANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDK 112 (167)
T ss_pred CEEEEEEE--------CCCc-HHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCC
Confidence 44556666 2454 333344457789999999999998764221 11233322 25799999999999
Q ss_pred CCHHhHHHHHHHHH------HhC--ceEEEeeCcCC
Q 017132 160 ISMADRNAWATYFA------KQG--TKVIFSNGQLG 187 (376)
Q Consensus 160 ~~~~~~~~w~~~~~------~~g--~~vi~iSa~~g 187 (376)
..........+.+. +.+ ..++.+|++.|
T Consensus 113 ~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 113 KNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred cCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeC
Confidence 76442233333221 112 24556899888
No 465
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.53 E-value=0.0038 Score=67.58 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.6
Q ss_pred eEEeEeecCCCCcchhhhhhhhc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.+|+++|..++|||||+++|+..
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~ 43 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAG 43 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 466
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.51 E-value=0.0095 Score=55.34 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=36.4
Q ss_pred CCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHH
Q 017132 148 RKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 148 kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
.|.++|+||+|+.+.++...|. + ...++++|++.|.|++++.+.+.+
T Consensus 177 ~p~iiV~NK~Dl~~~~~~~~~~----~-~~~~~~~SA~~g~gi~~l~~~i~~ 223 (233)
T cd01896 177 IPCLYVYNKIDLISIEELDLLA----R-QPNSVVISAEKGLNLDELKERIWD 223 (233)
T ss_pred eeEEEEEECccCCCHHHHHHHh----c-CCCEEEEcCCCCCCHHHHHHHHHH
Confidence 4889999999999887665432 2 245788999999999988776654
No 467
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.51 E-value=0.0014 Score=58.53 Aligned_cols=93 Identities=24% Similarity=0.338 Sum_probs=46.7
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccc--cCCCCceeEEEEEEeCCeEEEEeCCCCcCCCCCcHHHHH-HHHHhcccc-
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRFGKDLEFLDSPGIIPMRISDQAAAI-KLAICDDIG- 293 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v--~~~pg~T~~~~~~~~~~~i~l~DTpG~i~~~~~~~~~~~-kla~~~~i~- 293 (376)
..|.|+|..|+||++|+..|.......+ +-.+..+... .-..+..+.++|+||--+-+. .....+ .+..+.+|-
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~-~~~~~~~~~lvD~PGH~rlr~-~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNV-NNSKGKKLRLVDIPGHPRLRS-KLLDELKYLSNAKGIIF 81 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCG-SSTCGTCECEEEETT-HCCCH-HHHHHHHHHGGEEEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEe-ecCCCCEEEEEECCCcHHHHH-HHHHhhhchhhCCEEEE
Confidence 3599999999999999999996532211 1111111000 001245789999999854321 111211 111122211
Q ss_pred --cccc---ChhHHHHHHHHHHHc
Q 017132 294 --ERSY---DVADVAAILVQMLAR 312 (376)
Q Consensus 294 --~~~~---~~~~v~~~ll~~l~~ 312 (376)
|.+. +..++|.+|.++|..
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~ 105 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSD 105 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHH
T ss_pred EEeCccchhhHHHHHHHHHHHHHh
Confidence 2221 346678888887653
No 468
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=96.50 E-value=0.0078 Score=53.64 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=61.6
Q ss_pred cCCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHH----HHhcCCCeEEEEEccCC
Q 017132 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNREDM 159 (376)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~--~l~----~~l~~kp~ilVlNK~DL 159 (376)
....+-+||- +.| ..........+..+|.++.|+|..++.+..+. .+. +.....|.++|.||+||
T Consensus 51 ~~~~l~iwDt---aG~------e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL 121 (182)
T cd04172 51 QRIELSLWDT---SGS------PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 121 (182)
T ss_pred EEEEEEEEEC---CCc------hhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhh
Confidence 3456677772 223 22222223568899999999998776443321 111 11225789999999998
Q ss_pred CCH-----------H---hHHHHHHHHHHhCc-eEEEeeCcCCcc-hhhhhHHH
Q 017132 160 ISM-----------A---DRNAWATYFAKQGT-KVIFSNGQLGMG-TMKLSRLA 197 (376)
Q Consensus 160 ~~~-----------~---~~~~w~~~~~~~g~-~vi~iSa~~g~g-i~~L~~~l 197 (376)
... . ..++..++-++.+. ..+.+||++|.| +.++-..+
T Consensus 122 ~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~ 175 (182)
T cd04172 122 RTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 175 (182)
T ss_pred hcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHH
Confidence 531 0 01122233334563 688899999998 88775443
No 469
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=96.48 E-value=0.0089 Score=51.95 Aligned_cols=82 Identities=13% Similarity=0.023 Sum_probs=51.7
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--H----HHHHhcCCCeEEEEEccCCCCHHhHH--------------HHHHHHHHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--L----MDQWLGNRKRILVLNREDMISMADRN--------------AWATYFAKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~----l~~~l~~kp~ilVlNK~DL~~~~~~~--------------~w~~~~~~~ 175 (376)
.....+|+++.++|..++.+..+. . +.....+.|.++|.||+|+.+..... .-....++.
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 146 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI 146 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 347889999999998776442221 1 11122368999999999986532110 111122333
Q ss_pred C-ceEEEeeCcCCcchhhhhHHH
Q 017132 176 G-TKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 176 g-~~vi~iSa~~g~gi~~L~~~l 197 (376)
+ ..++.+|+++|.|++++.+.+
T Consensus 147 ~~~~~~e~Sa~~~~gi~~~f~~~ 169 (174)
T cd04135 147 GAHCYVECSALTQKGLKTVFDEA 169 (174)
T ss_pred CCCEEEEecCCcCCCHHHHHHHH
Confidence 4 357789999999998876544
No 470
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.43 E-value=0.011 Score=57.84 Aligned_cols=105 Identities=10% Similarity=0.020 Sum_probs=62.2
Q ss_pred cccccCCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH-hcCCCeEEEEEccCCC
Q 017132 82 DWADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW-LGNRKRILVLNREDMI 160 (376)
Q Consensus 82 ~~~~~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~-l~~kp~ilVlNK~DL~ 160 (376)
+....+.|+++.+-. |.. ..+ ..+++.+|+++.+.+. .+..+.+-... .....-++|+||+|+.
T Consensus 143 ~~~~~g~d~viieT~--------Gv~-qs~---~~i~~~aD~vlvv~~p---~~gd~iq~~k~gi~E~aDIiVVNKaDl~ 207 (332)
T PRK09435 143 LCEAAGYDVILVETV--------GVG-QSE---TAVAGMVDFFLLLQLP---GAGDELQGIKKGIMELADLIVINKADGD 207 (332)
T ss_pred HHhccCCCEEEEECC--------CCc-cch---hHHHHhCCEEEEEecC---CchHHHHHHHhhhhhhhheEEeehhccc
Confidence 555678899988842 111 111 1267889999999752 22222211111 1122348999999998
Q ss_pred CHHhHHHHHHHHHH---h--------CceEEEeeCcCCcchhhhhHHHHHhh
Q 017132 161 SMADRNAWATYFAK---Q--------GTKVIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 161 ~~~~~~~w~~~~~~---~--------g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
+..........++. . ..+++++|+.++.|+++|.+.+.+..
T Consensus 208 ~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 208 NKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred chhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 76533322222221 1 14688999999999999988776653
No 471
>PRK05433 GTP-binding protein LepA; Provisional
Probab=96.41 E-value=0.0027 Score=67.08 Aligned_cols=57 Identities=26% Similarity=0.360 Sum_probs=38.4
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccc--------cc------cCCCCceeEEEEEEe--------CCeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMC--------PA------APRPGVTRVLKWVRF--------GKDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~--------~v------~~~pg~T~~~~~~~~--------~~~i~l~DTpG~i~ 274 (376)
.+++|+|..++|||||+++|+..... .+ +..-|.|...+...+ +..+.|+||||...
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 46999999999999999999753211 11 112366665433322 23578999999974
No 472
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.39 E-value=0.01 Score=51.53 Aligned_cols=85 Identities=11% Similarity=-0.076 Sum_probs=52.6
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCCCCHHhH--HHHHHHHHHhC-ceEEEe
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMADR--NAWATYFAKQG-TKVIFS 182 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l--~~kp~ilVlNK~DL~~~~~~--~~w~~~~~~~g-~~vi~i 182 (376)
.....+..++.++.|+|..++.+-... .+.+.. .+.|++++.||.|+...... .......++.+ ..++.+
T Consensus 65 ~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd04177 65 MRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYET 144 (168)
T ss_pred hhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEe
Confidence 333567889999999998765322111 111111 25799999999999754321 11112223334 568889
Q ss_pred eCcCCcchhhhhHHH
Q 017132 183 NGQLGMGTMKLSRLA 197 (376)
Q Consensus 183 Sa~~g~gi~~L~~~l 197 (376)
||++|.|+.++.+.+
T Consensus 145 SA~~~~~i~~~f~~i 159 (168)
T cd04177 145 SARKRTNVDEVFIDL 159 (168)
T ss_pred eCCCCCCHHHHHHHH
Confidence 999999998765544
No 473
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.38 E-value=0.0055 Score=53.26 Aligned_cols=55 Identities=27% Similarity=0.373 Sum_probs=37.9
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeCCeEEEEeCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGI 272 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~ 272 (376)
.++|.++|..|+||||++++|.+...-.+++..|.-...-.++ +-.+.+.|--|=
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~-~~~L~iwDvGGq 70 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYK-GYTLNIWDVGGQ 70 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEec-ceEEEEEEcCCc
Confidence 4789999999999999999999877556666666433222211 334566665554
No 474
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.37 E-value=0.012 Score=52.21 Aligned_cols=82 Identities=13% Similarity=0.016 Sum_probs=51.5
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HH----HHHhcCCCeEEEEEccCCCCH-------------Hh-HHHHHHHHHHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDMISM-------------AD-RNAWATYFAKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l----~~~l~~kp~ilVlNK~DL~~~-------------~~-~~~w~~~~~~~ 175 (376)
.....+|.++.|+|..++.+..+. .+ .+.....|.++|.||+||.+. .. ..+..++-.+.
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~ 147 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQL 147 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 457899999999999776554331 11 111236789999999998531 00 11122222344
Q ss_pred Cc-eEEEeeCcCCcc-hhhhhHHH
Q 017132 176 GT-KVIFSNGQLGMG-TMKLSRLA 197 (376)
Q Consensus 176 g~-~vi~iSa~~g~g-i~~L~~~l 197 (376)
+. ..+.+||+.|.+ +.++-..+
T Consensus 148 ~~~~~~E~SA~~~~~~v~~~F~~~ 171 (178)
T cd04131 148 GAEIYLECSAFTSEKSVRDIFHVA 171 (178)
T ss_pred CCCEEEECccCcCCcCHHHHHHHH
Confidence 53 678899999984 88765544
No 475
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=96.34 E-value=0.0042 Score=57.72 Aligned_cols=56 Identities=18% Similarity=0.163 Sum_probs=36.1
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---C-CeEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---G-KDLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~-~~i~l~DTpG~i~ 274 (376)
||.++|..++||||+.+.+..+-...-....|.|.+++..++ + -.+.+.|+||-..
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~ 60 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDD 60 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCS
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccc
Confidence 589999999999999999986433333445688888765444 2 3688999999864
No 476
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.33 E-value=0.004 Score=62.83 Aligned_cols=40 Identities=28% Similarity=0.368 Sum_probs=28.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcc--cccccCCCCceeEE
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRR--MCPAAPRPGVTRVL 255 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~--~~~v~~~pg~T~~~ 255 (376)
..++|+++|.-++|||||+.+|++.. ...-+-..|.|.+.
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~ 49 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRL 49 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEe
Confidence 35789999999999999999997631 11122235677664
No 477
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.31 E-value=0.013 Score=54.07 Aligned_cols=56 Identities=27% Similarity=0.353 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI 160 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~ 160 (376)
|||. ++..+....+..+|.++.|+|+..+.......+.+.. .+.|.++|+||+|+.
T Consensus 81 PG~~-~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHV-DFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CCcc-ccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 7874 5667778889999999999999877654443333332 367999999999986
No 478
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.29 E-value=0.0071 Score=53.91 Aligned_cols=84 Identities=13% Similarity=0.032 Sum_probs=53.5
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHH---HHHHh---cCCCeEEEEEccCCCCHHhHH--------------HHHHHHHHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPL---MDQWL---GNRKRILVLNREDMISMADRN--------------AWATYFAKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~---l~~~l---~~kp~ilVlNK~DL~~~~~~~--------------~w~~~~~~~ 175 (376)
..+..+|.++.|+|..++.+..+.+ +..+. .+.|+++|.||+||....... .-.+...+.
T Consensus 67 ~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 146 (189)
T cd04134 67 LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRI 146 (189)
T ss_pred ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 3578899999999987765443221 22221 257899999999997543211 011112223
Q ss_pred C-ceEEEeeCcCCcchhhhhHHHHH
Q 017132 176 G-TKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 176 g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
+ ..++.+||+.|.|+.++.+.+.+
T Consensus 147 ~~~~~~e~SAk~~~~v~e~f~~l~~ 171 (189)
T cd04134 147 NALRYLECSAKLNRGVNEAFTEAAR 171 (189)
T ss_pred CCCEEEEccCCcCCCHHHHHHHHHH
Confidence 3 46788999999999887665543
No 479
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=96.28 E-value=0.0065 Score=53.89 Aligned_cols=83 Identities=12% Similarity=-0.037 Sum_probs=53.5
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--H-HHHH---hcCCCeEEEEEccCCCCHHh------------HHHHHHHHHHhCc
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--L-MDQW---LGNRKRILVLNREDMISMAD------------RNAWATYFAKQGT 177 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~-l~~~---l~~kp~ilVlNK~DL~~~~~------------~~~w~~~~~~~g~ 177 (376)
..+..+|.+|.|+|..++.+..+. . +..+ ..+.|.++|.||+||.+... .++-..+-.+.+.
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 147 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC
Confidence 468899999999999876654332 1 2212 12578999999999954320 1111122223354
Q ss_pred -eEEEeeCcCCcchhhhhHHHH
Q 017132 178 -KVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 178 -~vi~iSa~~g~gi~~L~~~l~ 198 (376)
..+.+||+.|.|+.++-+.+.
T Consensus 148 ~~~~E~SAk~~~nV~~~F~~~~ 169 (176)
T cd04133 148 AAYIECSSKTQQNVKAVFDAAI 169 (176)
T ss_pred CEEEECCCCcccCHHHHHHHHH
Confidence 477899999999988755544
No 480
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=96.25 E-value=0.0047 Score=54.71 Aligned_cols=57 Identities=21% Similarity=0.304 Sum_probs=39.5
Q ss_pred CceEEeEeecCCCCcchhhhhhhhccc-----ccccCCCCceeEEEEEEeCCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-----CPAAPRPGVTRVLKWVRFGKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~-----~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~i 273 (376)
..++|.+.|-++||||||+|....++- +.+ ..-|.|++.+.-.---.+++-||.|=-
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTI-gadFltKev~Vd~~~vtlQiWDTAGQE 69 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATI-GADFLTKEVQVDDRSVTLQIWDTAGQE 69 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhcccc-chhheeeEEEEcCeEEEEEEEecccHH
Confidence 468999999999999999999986531 111 224677776542111246789999963
No 481
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.22 E-value=0.031 Score=53.93 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHh-hhcCeEEEEEecCCCCCCC-cHHHHHH--hc---CCCeEEEEEccCCCCHHhHHHHHHHHHHhCc-e
Q 017132 107 IAKTEKELKDQL-KLMDVVIEVRDARIPLSTT-HPLMDQW--LG---NRKRILVLNREDMISMADRNAWATYFAKQGT-K 178 (376)
Q Consensus 107 ~~~~~k~l~~vi-dr~dlILeV~DaR~p~~~~-~~~l~~~--l~---~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~-~ 178 (376)
|.+++++.--.+ --.++||++||.+...+.. ..|+..+ ++ .+|.++|+||+|....+.......++...|. .
T Consensus 233 rN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~ 312 (346)
T COG1084 233 RNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLEEGGEE 312 (346)
T ss_pred hcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchhHHHHHHHHHHhhcccc
Confidence 334555544333 4568999999998654432 2222222 11 4799999999999988877766666655553 3
Q ss_pred EEEeeCcCCcchhhhhHHHHHh
Q 017132 179 VIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~l 200 (376)
...+++..+.+.+.+.+.+...
T Consensus 313 ~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 313 PLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred ccceeeeehhhHHHHHHHHHHH
Confidence 5567777788877776655544
No 482
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.18 E-value=0.0074 Score=55.76 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=19.3
Q ss_pred EEeEeecCCCCcchhhhhhhh
Q 017132 219 RAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (376)
+|+++|..++|||||+++|+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~ 21 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ 21 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999984
No 483
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=96.11 E-value=0.021 Score=53.24 Aligned_cols=57 Identities=25% Similarity=0.283 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS 161 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~ 161 (376)
||| ..+.......+..+|.++.|+|+..+.......+.+.. .++|+++++||+|+..
T Consensus 72 PG~-~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 72 PGH-MDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred CCc-cchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 666 34555667788999999999999876543333333333 3789999999999874
No 484
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=96.06 E-value=0.03 Score=53.13 Aligned_cols=59 Identities=19% Similarity=0.141 Sum_probs=40.9
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM 162 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~ 162 (376)
.|||. .+.......+..+|.++.|+|+..+.......+.+.. .+.|+++++||+|+...
T Consensus 78 TPG~~-df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 78 TPGHE-DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred CCCch-HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 37763 4455566778999999999999875433222333332 37899999999998653
No 485
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=96.05 E-value=0.0082 Score=54.42 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=31.1
Q ss_pred eecCCCCcchhhhhhhhcccc-cccCCCCceeEEEEEEeC---CeEEEEeCCCCc
Q 017132 223 VGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (376)
Q Consensus 223 vG~pNvGKSTLiN~L~~~~~~-~v~~~pg~T~~~~~~~~~---~~i~l~DTpG~i 273 (376)
||-+|||||||+++++...-. ...+..|.+.....+.++ -.+.+.||+|--
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e 55 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQE 55 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCch
Confidence 689999999999999853211 112222333322333332 257899999974
No 486
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.03 Score=50.58 Aligned_cols=91 Identities=13% Similarity=0.118 Sum_probs=65.9
Q ss_pred cChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--------CCCeEEEEEccCCCCHHhHH--HHHHH
Q 017132 102 WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------NRKRILVLNREDMISMADRN--AWATY 171 (376)
Q Consensus 102 w~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--------~kp~ilVlNK~DL~~~~~~~--~w~~~ 171 (376)
|.-+-+.+....+..+...++-|+.|.|.-+..+..+ +..|+. .-++++|-||+|+..++.+. .-.++
T Consensus 66 WDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfen--i~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~l 143 (207)
T KOG0078|consen 66 WDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFEN--IRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEAL 143 (207)
T ss_pred EEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHH--HHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHH
Confidence 5555567888888899999999999999876554443 333442 46899999999998755322 22233
Q ss_pred HHHhCceEEEeeCcCCcchhhhh
Q 017132 172 FAKQGTKVIFSNGQLGMGTMKLS 194 (376)
Q Consensus 172 ~~~~g~~vi~iSa~~g~gi~~L~ 194 (376)
-.+.|...+.+||+.|.++.+.-
T Consensus 144 A~e~G~~F~EtSAk~~~NI~eaF 166 (207)
T KOG0078|consen 144 AREYGIKFFETSAKTNFNIEEAF 166 (207)
T ss_pred HHHhCCeEEEccccCCCCHHHHH
Confidence 34568888899999999987653
No 487
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.03 E-value=0.018 Score=52.45 Aligned_cols=56 Identities=25% Similarity=0.342 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI 160 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~ 160 (376)
|||. ++.......+..+|.++.|+|+..+......++.+.. .++|.++|+||+|++
T Consensus 79 pG~~-~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 79 PGHV-NFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred CCCc-chHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 6663 3455666778999999999999876544333322222 368999999999987
No 488
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.98 E-value=0.0053 Score=57.72 Aligned_cols=59 Identities=20% Similarity=0.256 Sum_probs=41.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhccc---ccccCCCCceeEEEEEEe-----CCeEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRM---CPAAPRPGVTRVLKWVRF-----GKDLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~---~~v~~~pg~T~~~~~~~~-----~~~i~l~DTpG~i~ 274 (376)
...+|+-||-|+.||||||+.|.+.+- ...-..|++-+..+++.+ .-++.++||+||=.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGD 107 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGD 107 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccccc
Confidence 457899999999999999999987431 112234555555444443 23578999999953
No 489
>PRK12740 elongation factor G; Reviewed
Probab=95.98 E-value=0.0064 Score=65.16 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=0.0
Q ss_pred eecCCCCcchhhhhhhhcccccccCC-----------------CCceeEEEEEEe---CCeEEEEeCCC
Q 017132 223 VGYPNVGKSSLINRLLKRRMCPAAPR-----------------PGVTRVLKWVRF---GKDLEFLDSPG 271 (376)
Q Consensus 223 vG~pNvGKSTLiN~L~~~~~~~v~~~-----------------pg~T~~~~~~~~---~~~i~l~DTpG 271 (376)
||.+|+|||||+|+|........... .|.|.+.....+ +..+.++||||
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG 69 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPG 69 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCC
No 490
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=95.93 E-value=0.023 Score=51.61 Aligned_cols=81 Identities=12% Similarity=-0.034 Sum_probs=52.2
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcch
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGT 190 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi 190 (376)
.....++.++.++|.....+.... .+.....+.|+++|.||+|+................+..++.+|+++|.|+
T Consensus 77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 77 GYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNF 156 (215)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 456788999999998765432111 111122367888999999997543222233344445667888999999998
Q ss_pred hhhhHH
Q 017132 191 MKLSRL 196 (376)
Q Consensus 191 ~~L~~~ 196 (376)
.++...
T Consensus 157 ~~~f~~ 162 (215)
T PTZ00132 157 EKPFLW 162 (215)
T ss_pred HHHHHH
Confidence 765443
No 491
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=95.93 E-value=0.052 Score=54.69 Aligned_cols=85 Identities=22% Similarity=0.267 Sum_probs=61.2
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHH-HHh-cCCCeEEEEEccCCCCH---HhHHHHHHHHHHhC-
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-QWL-GNRKRILVLNREDMISM---ADRNAWATYFAKQG- 176 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~-~~l-~~kp~ilVlNK~DL~~~---~~~~~w~~~~~~~g- 176 (376)
-||| +.+--+.+.++.-+|-+|.++||..+....-..+. +.+ .+.+-|+|+||+|.-.. +...+-.+.|-..|
T Consensus 75 TPGH-ADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A 153 (603)
T COG1217 75 TPGH-ADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGA 153 (603)
T ss_pred CCCc-CCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 5888 56677788899999999999999886655444433 333 36778899999998643 34455555565544
Q ss_pred ------ceEEEeeCcCCc
Q 017132 177 ------TKVIFSNGQLGM 188 (376)
Q Consensus 177 ------~~vi~iSa~~g~ 188 (376)
.++++.|+..|.
T Consensus 154 ~deQLdFPivYAS~~~G~ 171 (603)
T COG1217 154 TDEQLDFPIVYASARNGT 171 (603)
T ss_pred ChhhCCCcEEEeeccCce
Confidence 679999998774
No 492
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=95.90 E-value=0.011 Score=59.57 Aligned_cols=87 Identities=21% Similarity=0.245 Sum_probs=57.1
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--------------CCCeEEEEEccCCCCHHhHHHH--HHHHHH
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--------------NRKRILVLNREDMISMADRNAW--ATYFAK 174 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--------------~kp~ilVlNK~DL~~~~~~~~w--~~~~~~ 174 (376)
.+..++.+.++|||+.|+|+-....+.+..+++.+. +++.+++.||+|++++-..-.| ..|...
T Consensus 339 I~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~ 418 (531)
T KOG1191|consen 339 IERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA 418 (531)
T ss_pred HHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc
Confidence 444557799999999999997766666666555442 2688999999999987211122 112222
Q ss_pred hC----ceEEEeeCcCCcchhhhhHHH
Q 017132 175 QG----TKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 175 ~g----~~vi~iSa~~g~gi~~L~~~l 197 (376)
.| ..+.++|++++.|+.+|.+.+
T Consensus 419 ~~~~~~~i~~~vs~~tkeg~~~L~~al 445 (531)
T KOG1191|consen 419 EGRSVFPIVVEVSCTTKEGCERLSTAL 445 (531)
T ss_pred ccCcccceEEEeeechhhhHHHHHHHH
Confidence 12 234557888888887775554
No 493
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=95.88 E-value=0.032 Score=51.48 Aligned_cols=82 Identities=16% Similarity=0.062 Sum_probs=50.3
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHHH----HhcCCCeEEEEEccCCCCHHh-HH------------HHHHHH-HHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLNREDMISMAD-RN------------AWATYF-AKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~~----~l~~kp~ilVlNK~DL~~~~~-~~------------~w~~~~-~~~ 175 (376)
..+..+|++|.|||..++.+..+. .+.. ...+.|+++|.||+||..... .+ +-...+ ++.
T Consensus 68 ~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~ 147 (222)
T cd04173 68 LAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQV 147 (222)
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHc
Confidence 468999999999998876443221 1111 113579999999999964210 00 011112 233
Q ss_pred C-ceEEEeeCcCCc-chhhhhHHH
Q 017132 176 G-TKVIFSNGQLGM-GTMKLSRLA 197 (376)
Q Consensus 176 g-~~vi~iSa~~g~-gi~~L~~~l 197 (376)
| ...+.+||+.+. |+.++-...
T Consensus 148 ~~~~y~E~SAk~~~~~V~~~F~~~ 171 (222)
T cd04173 148 GAVSYVECSSRSSERSVRDVFHVA 171 (222)
T ss_pred CCCEEEEcCCCcCCcCHHHHHHHH
Confidence 4 367889999877 487765443
No 494
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.87 E-value=0.057 Score=54.29 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.5
Q ss_pred ceEEeEeecCCCCcchhhhhhhhc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
..+|+|+|-+++|||||+++|...
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 495
>PRK12739 elongation factor G; Reviewed
Probab=95.83 E-value=0.035 Score=59.75 Aligned_cols=60 Identities=23% Similarity=0.292 Sum_probs=45.6
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA 163 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~ 163 (376)
-|||.. +..++...+..+|+++.|+|+..+.......+..+. .++|.++++||+|+....
T Consensus 80 TPG~~~-f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 80 TPGHVD-FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGAD 141 (691)
T ss_pred CCCHHH-HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 388864 555777889999999999999887655444444443 368999999999998643
No 496
>PRK00007 elongation factor G; Reviewed
Probab=95.82 E-value=0.035 Score=59.85 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA 163 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~ 163 (376)
|||.. +..++...+..+|+++.|+|+..+.......+..++ .++|+++++||+|+.+..
T Consensus 83 PG~~~-f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 83 PGHVD-FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred CCcHH-HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 88864 445677889999999999999887666555555554 368999999999998644
No 497
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.82 E-value=0.0039 Score=55.09 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=51.9
Q ss_pred HHhhhcCeEEEEEecCCCC--CCCcHHHHHHhc-----CCCeEEEEEccCCCCHHhHHHHHHHHH------HhCceEEEe
Q 017132 116 DQLKLMDVVIEVRDARIPL--STTHPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA------KQGTKVIFS 182 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~--~~~~~~l~~~l~-----~kp~ilVlNK~DL~~~~~~~~w~~~~~------~~g~~vi~i 182 (376)
.....+|.|++|+|+.++. .+...++..++. ..|+++++||.|+...-......+.+. .....++.+
T Consensus 77 ~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~ 156 (175)
T PF00025_consen 77 SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSC 156 (175)
T ss_dssp GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEE
T ss_pred eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEee
Confidence 4577899999999988653 122233444432 589999999999875332233333321 122457789
Q ss_pred eCcCCcchhhhhH
Q 017132 183 NGQLGMGTMKLSR 195 (376)
Q Consensus 183 Sa~~g~gi~~L~~ 195 (376)
|+.+|.|+.+..+
T Consensus 157 sa~~g~Gv~e~l~ 169 (175)
T PF00025_consen 157 SAKTGEGVDEGLE 169 (175)
T ss_dssp BTTTTBTHHHHHH
T ss_pred eccCCcCHHHHHH
Confidence 9999999876544
No 498
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=95.81 E-value=0.07 Score=45.72 Aligned_cols=116 Identities=12% Similarity=0.050 Sum_probs=72.7
Q ss_pred hhcccccCCcEEEEcCC-CCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCC--CCcHHHHHHhc-----CCCeE
Q 017132 80 ECDWADLDADLYYWTKS-LRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS--TTHPLMDQWLG-----NRKRI 151 (376)
Q Consensus 80 e~~~~~~~~~~vi~~~~-L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~--~~~~~l~~~l~-----~kp~i 151 (376)
|..+...++++.-.+.. .+=.-|--|.+..+.......-..+++|++++||.+|.. ....++..++. +.|.+
T Consensus 47 edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~L 126 (186)
T KOG0075|consen 47 EDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLL 126 (186)
T ss_pred hhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEE
Confidence 44566666655544433 222234433345544444567899999999999988642 23456666664 57999
Q ss_pred EEEEccCCCCHHhHHHHHHHHHHhC--------ceEEEeeCcCCcchhhhhHHHH
Q 017132 152 LVLNREDMISMADRNAWATYFAKQG--------TKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 152 lVlNK~DL~~~~~~~~w~~~~~~~g--------~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
++-||.|+-..-...+..+ +.| .-++.+|++...+++.+.+-+.
T Consensus 127 VLGnK~d~~~AL~~~~li~---rmgL~sitdREvcC~siScke~~Nid~~~~Wli 178 (186)
T KOG0075|consen 127 VLGNKIDLPGALSKIALIE---RMGLSSITDREVCCFSISCKEKVNIDITLDWLI 178 (186)
T ss_pred EecccccCcccccHHHHHH---HhCccccccceEEEEEEEEcCCccHHHHHHHHH
Confidence 9999999865432222222 233 3466789999888887765543
No 499
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=95.79 E-value=0.021 Score=51.76 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=44.1
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhc-CeEEEEEecCCCCCCCcH---HHHHHh-------cCCCeEEEEE
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLM-DVVIEVRDARIPLSTTHP---LMDQWL-------GNRKRILVLN 155 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~-dlILeV~DaR~p~~~~~~---~l~~~l-------~~kp~ilVlN 155 (376)
+..+.+|| +|||. ++...+.+.+..+ +.|++|+|+......... .+..++ ...|++++.|
T Consensus 47 ~~~~~l~D--------~pG~~-~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~N 117 (203)
T cd04105 47 GKKFRLVD--------VPGHP-KLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACN 117 (203)
T ss_pred CceEEEEE--------CCCCH-HHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEec
Confidence 34455666 57875 4556666778888 999999999875322111 111111 2679999999
Q ss_pred ccCCCCH
Q 017132 156 REDMISM 162 (376)
Q Consensus 156 K~DL~~~ 162 (376)
|.|+...
T Consensus 118 K~Dl~~a 124 (203)
T cd04105 118 KQDLFTA 124 (203)
T ss_pred chhhccc
Confidence 9998754
No 500
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.74 E-value=0.012 Score=52.43 Aligned_cols=57 Identities=25% Similarity=0.332 Sum_probs=36.1
Q ss_pred ceEEeEeecCCCCcchhhhhhhhccccc-ccCC---CCceeEEEEEEeCCeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPR---PGVTRVLKWVRFGKDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~---pg~T~~~~~~~~~~~i~l~DTpG~i 273 (376)
..||.++|..|||||||+=+....+--. -.++ .|.|+.+....-.-++.+-||.|-=
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQE 65 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQE 65 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcc
Confidence 4689999999999999998887432111 1222 3444443321112256799999974
Done!