Query 017132
Match_columns 376
No_of_seqs 438 out of 3985
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 09:27:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017132.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017132hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 4.7E-55 1.6E-59 415.8 28.7 273 100-375 3-281 (282)
2 3cnl_A YLQF, putative uncharac 100.0 1.5E-47 5.2E-52 360.4 9.9 241 101-375 2-249 (262)
3 2qtf_A Protein HFLX, GTP-bindi 100.0 8.2E-36 2.8E-40 292.9 -2.2 215 44-285 12-249 (364)
4 3ec1_A YQEH GTPase; atnos1, at 99.9 7.3E-24 2.5E-28 208.3 14.8 154 108-275 59-225 (369)
5 3h2y_A GTPase family protein; 99.9 2.1E-23 7E-28 205.0 12.8 154 108-275 57-224 (368)
6 1mky_A Probable GTP-binding pr 99.8 7E-20 2.4E-24 183.8 12.1 164 109-273 70-239 (439)
7 2hjg_A GTP-binding protein ENG 99.8 4.4E-20 1.5E-24 185.2 6.4 159 109-274 71-235 (436)
8 1t9h_A YLOQ, probable GTPase E 99.8 6.9E-20 2.4E-24 175.2 6.4 140 117-276 83-238 (307)
9 4dcu_A GTP-binding protein ENG 99.7 1.1E-18 3.8E-23 176.0 8.5 162 107-275 89-256 (456)
10 2rcn_A Probable GTPase ENGC; Y 99.7 1.2E-17 4E-22 162.8 10.2 141 115-275 125-281 (358)
11 2yv5_A YJEQ protein; hydrolase 99.7 3.9E-17 1.3E-21 156.1 12.8 138 117-274 76-228 (302)
12 1u0l_A Probable GTPase ENGC; p 99.6 8.8E-16 3E-20 146.6 11.4 142 116-277 80-236 (301)
13 2e87_A Hypothetical protein PH 99.6 5.5E-17 1.9E-21 158.5 -2.0 156 122-278 59-230 (357)
14 4a9a_A Ribosome-interacting GT 99.5 2.1E-14 7.1E-19 140.8 5.8 59 216-275 71-132 (376)
15 1xzp_A Probable tRNA modificat 99.1 1.8E-11 6.1E-16 123.9 2.9 57 217-273 243-302 (482)
16 3gee_A MNME, tRNA modification 99.1 3.6E-11 1.2E-15 121.5 4.1 59 216-274 232-293 (476)
17 1mky_A Probable GTP-binding pr 99.0 6.7E-11 2.3E-15 118.4 3.0 56 219-274 3-61 (439)
18 1wf3_A GTP-binding protein; GT 99.0 2.2E-10 7.4E-15 109.2 5.2 58 218-275 8-68 (301)
19 3lxw_A GTPase IMAP family memb 99.0 2.2E-10 7.6E-15 105.8 4.7 60 216-275 20-83 (247)
20 3i8s_A Ferrous iron transport 99.0 3.7E-10 1.3E-14 106.0 6.0 58 217-275 3-63 (274)
21 3geh_A MNME, tRNA modification 99.0 7E-11 2.4E-15 119.0 1.0 59 216-274 223-284 (462)
22 3iby_A Ferrous iron transport 98.9 7.4E-10 2.5E-14 103.0 6.6 57 219-276 3-62 (256)
23 1svi_A GTP-binding protein YSX 98.9 5.5E-10 1.9E-14 97.9 5.2 61 216-276 22-83 (195)
24 3iev_A GTP-binding protein ERA 98.9 5.1E-10 1.8E-14 106.8 5.3 60 217-276 10-73 (308)
25 2gj8_A MNME, tRNA modification 98.9 6E-10 2E-14 96.6 5.3 58 217-274 4-64 (172)
26 2hjg_A GTP-binding protein ENG 98.9 2.4E-10 8.3E-15 114.2 2.9 57 218-274 4-63 (436)
27 3pqc_A Probable GTP-binding pr 98.9 2E-09 7E-14 93.8 8.4 61 216-276 22-82 (195)
28 4dhe_A Probable GTP-binding pr 98.9 4.7E-10 1.6E-14 100.7 4.3 59 217-275 29-92 (223)
29 3lxx_A GTPase IMAP family memb 98.9 1.4E-09 4.8E-14 99.4 6.0 62 216-278 28-94 (239)
30 3def_A T7I23.11 protein; chlor 98.9 1.9E-09 6.6E-14 100.2 6.8 60 216-275 35-97 (262)
31 1h65_A Chloroplast outer envel 98.9 2.2E-09 7.5E-14 100.2 7.1 60 216-275 38-100 (270)
32 3a1s_A Iron(II) transport prot 98.9 2.2E-09 7.4E-14 99.9 7.0 60 217-277 5-67 (258)
33 1jal_A YCHF protein; nucleotid 98.9 6.3E-10 2.1E-14 108.4 3.3 57 218-275 3-79 (363)
34 1wxq_A GTP-binding protein; st 98.9 5.6E-10 1.9E-14 110.3 2.9 56 218-274 1-83 (397)
35 3b1v_A Ferrous iron uptake tra 98.9 2.3E-09 7.8E-14 100.6 6.7 58 217-275 3-62 (272)
36 4dcu_A GTP-binding protein ENG 98.9 1.2E-09 4.2E-14 109.7 4.9 57 218-274 24-83 (456)
37 1ega_A Protein (GTP-binding pr 98.8 1.2E-09 4.3E-14 103.8 4.3 56 218-273 9-67 (301)
38 1f5n_A Interferon-induced guan 98.8 2E-09 6.9E-14 111.0 5.7 58 216-275 37-104 (592)
39 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 2.9E-09 9.9E-14 104.9 6.1 61 215-275 18-98 (392)
40 3k53_A Ferrous iron transport 98.8 4.9E-09 1.7E-13 97.9 7.3 60 217-277 3-65 (271)
41 3t5d_A Septin-7; GTP-binding p 98.8 3E-09 1E-13 99.5 5.8 58 216-273 7-76 (274)
42 2ohf_A Protein OLA1, GTP-bindi 98.8 1.8E-09 6E-14 106.4 4.0 60 215-275 20-99 (396)
43 2xtp_A GTPase IMAP family memb 98.8 3E-09 1E-13 98.4 5.0 61 216-276 21-85 (260)
44 2www_A Methylmalonic aciduria 98.8 1.8E-09 6.1E-14 104.9 2.9 24 216-239 73-96 (349)
45 2cxx_A Probable GTP-binding pr 98.8 3.7E-09 1.3E-13 91.9 4.6 55 218-274 2-56 (190)
46 2wji_A Ferrous iron transport 98.8 6.8E-09 2.3E-13 89.0 6.1 57 218-275 4-63 (165)
47 1pui_A ENGB, probable GTP-bind 98.8 4E-09 1.4E-13 93.6 4.4 59 216-274 25-84 (210)
48 2wjg_A FEOB, ferrous iron tran 98.7 1.6E-08 5.6E-13 87.8 7.6 58 217-275 7-67 (188)
49 1lnz_A SPO0B-associated GTP-bi 98.7 1.7E-09 5.7E-14 104.8 1.1 56 218-274 159-218 (342)
50 2dyk_A GTP-binding protein; GT 98.7 4.8E-09 1.6E-13 88.5 3.6 57 218-274 2-61 (161)
51 2aka_B Dynamin-1; fusion prote 98.7 2.7E-09 9.4E-14 100.3 2.2 35 216-250 25-64 (299)
52 2qu8_A Putative nucleolar GTP- 98.7 9.6E-09 3.3E-13 93.0 5.3 58 216-274 28-88 (228)
53 2nzj_A GTP-binding protein REM 98.7 1.3E-08 4.6E-13 87.0 5.9 58 217-274 4-64 (175)
54 2dby_A GTP-binding protein; GD 98.7 5.7E-09 2E-13 102.0 2.8 57 218-275 2-82 (368)
55 2x2e_A Dynamin-1; nitration, h 98.7 1.9E-08 6.6E-13 97.6 5.9 34 217-250 31-69 (353)
56 1jwy_B Dynamin A GTPase domain 98.6 2.5E-08 8.6E-13 94.6 6.2 26 217-242 24-49 (315)
57 1z0j_A RAB-22, RAS-related pro 98.6 3.5E-08 1.2E-12 83.8 6.4 57 217-273 6-66 (170)
58 3q72_A GTP-binding protein RAD 98.6 2.8E-08 9.7E-13 84.3 4.4 57 218-274 3-61 (166)
59 2qpt_A EH domain-containing pr 98.6 4.5E-08 1.5E-12 100.6 5.6 39 216-254 64-104 (550)
60 3qq5_A Small GTP-binding prote 98.5 3.6E-08 1.2E-12 98.0 4.0 60 216-275 33-96 (423)
61 1ek0_A Protein (GTP-binding pr 98.5 1.2E-07 4.2E-12 80.2 6.3 57 217-273 3-63 (170)
62 1kao_A RAP2A; GTP-binding prot 98.5 1.5E-07 5.2E-12 79.3 6.7 55 217-273 3-62 (167)
63 2lkc_A Translation initiation 98.5 3.1E-08 1.1E-12 85.0 2.4 57 216-273 7-66 (178)
64 2fg5_A RAB-22B, RAS-related pr 98.5 8.6E-08 2.9E-12 84.0 5.2 57 217-273 23-83 (192)
65 3r7w_A Gtpase1, GTP-binding pr 98.5 6.4E-08 2.2E-12 92.1 4.6 57 217-273 3-63 (307)
66 2j69_A Bacterial dynamin-like 98.5 1.2E-07 4.1E-12 100.1 7.1 36 216-251 68-103 (695)
67 1upt_A ARL1, ADP-ribosylation 98.5 1.2E-07 4.1E-12 80.6 5.6 56 216-273 6-62 (171)
68 1r2q_A RAS-related protein RAB 98.5 1.4E-07 4.8E-12 79.8 6.0 57 217-273 6-66 (170)
69 2ged_A SR-beta, signal recogni 98.5 6.6E-08 2.3E-12 84.4 3.8 56 216-275 47-104 (193)
70 2g6b_A RAS-related protein RAB 98.5 1.6E-07 5.6E-12 80.6 6.2 58 216-273 9-71 (180)
71 3tw8_B RAS-related protein RAB 98.5 1.4E-07 4.7E-12 80.9 5.4 57 216-273 8-69 (181)
72 3gj0_A GTP-binding nuclear pro 98.5 1.6E-07 5.6E-12 84.1 5.9 58 216-273 14-75 (221)
73 1wms_A RAB-9, RAB9, RAS-relate 98.4 2.4E-07 8.1E-12 79.3 6.4 57 216-273 6-67 (177)
74 1z0f_A RAB14, member RAS oncog 98.4 2.6E-07 8.7E-12 79.0 6.5 58 216-273 14-75 (179)
75 1fzq_A ADP-ribosylation factor 98.4 1.2E-07 4.2E-12 82.4 4.4 56 216-273 15-71 (181)
76 4dsu_A GTPase KRAS, isoform 2B 98.4 2.8E-07 9.4E-12 79.7 6.6 56 217-274 4-64 (189)
77 1ksh_A ARF-like protein 2; sma 98.4 1.9E-07 6.5E-12 81.0 5.4 56 216-273 17-73 (186)
78 3zvr_A Dynamin-1; hydrolase, D 98.4 2.6E-07 8.9E-12 97.8 7.2 57 184-242 20-76 (772)
79 2oil_A CATX-8, RAS-related pro 98.4 2.2E-07 7.5E-12 81.1 5.6 59 216-274 24-86 (193)
80 2h17_A ADP-ribosylation factor 98.4 1.8E-07 6E-12 81.1 5.0 56 216-273 20-76 (181)
81 1g16_A RAS-related protein SEC 98.4 1.3E-07 4.6E-12 80.1 4.1 57 217-274 3-64 (170)
82 2efe_B Small GTP-binding prote 98.4 3E-07 1E-11 78.9 6.4 58 216-273 11-72 (181)
83 4dhe_A Probable GTP-binding pr 98.4 1.3E-06 4.4E-11 78.0 10.6 85 118-202 113-210 (223)
84 1moz_A ARL1, ADP-ribosylation 98.4 1.7E-07 5.7E-12 80.9 4.6 57 216-274 17-74 (183)
85 1u8z_A RAS-related protein RAL 98.4 3.9E-07 1.3E-11 76.8 6.7 55 217-273 4-63 (168)
86 1z08_A RAS-related protein RAB 98.4 2.2E-07 7.5E-12 78.9 5.2 57 216-273 5-66 (170)
87 1zj6_A ADP-ribosylation factor 98.4 2.2E-07 7.4E-12 80.8 5.2 56 217-274 16-72 (187)
88 2y8e_A RAB-protein 6, GH09086P 98.4 3.4E-07 1.2E-11 78.2 6.4 56 217-273 14-74 (179)
89 2x77_A ADP-ribosylation factor 98.4 2.2E-07 7.4E-12 80.9 5.1 56 216-273 21-77 (189)
90 1z2a_A RAS-related protein RAB 98.4 3.6E-07 1.2E-11 77.3 6.3 58 216-274 4-66 (168)
91 2gf9_A RAS-related protein RAB 98.4 3.9E-07 1.3E-11 79.3 6.8 58 216-273 21-82 (189)
92 2p5s_A RAS and EF-hand domain 98.4 2.6E-07 8.7E-12 81.4 5.6 58 216-273 27-88 (199)
93 1x3s_A RAS-related protein RAB 98.4 6.4E-07 2.2E-11 77.8 8.1 106 114-232 81-194 (195)
94 1udx_A The GTP-binding protein 98.4 1.4E-07 4.9E-12 93.5 4.2 56 218-274 158-217 (416)
95 1z06_A RAS-related protein RAB 98.4 4.4E-07 1.5E-11 79.0 6.6 58 216-273 19-80 (189)
96 3tkl_A RAS-related protein RAB 98.4 2.7E-07 9.1E-12 80.5 5.3 57 216-273 15-76 (196)
97 2fn4_A P23, RAS-related protei 98.4 3.2E-07 1.1E-11 78.5 5.6 57 216-274 8-69 (181)
98 2bme_A RAB4A, RAS-related prot 98.4 4.3E-07 1.5E-11 78.4 6.4 57 216-273 9-70 (186)
99 2erx_A GTP-binding protein DI- 98.4 2.3E-07 7.8E-12 78.7 4.4 55 217-273 3-62 (172)
100 3cph_A RAS-related protein SEC 98.4 2.4E-07 8.2E-12 82.0 4.7 58 216-274 19-81 (213)
101 3cb4_D GTP-binding protein LEP 98.4 4.3E-07 1.5E-11 94.1 7.2 130 104-240 79-216 (599)
102 1c1y_A RAS-related protein RAP 98.4 4.2E-07 1.4E-11 76.7 6.0 56 217-274 3-63 (167)
103 1x3s_A RAS-related protein RAB 98.4 4.5E-07 1.5E-11 78.8 6.3 58 217-274 15-76 (195)
104 1zbd_A Rabphilin-3A; G protein 98.4 4.9E-07 1.7E-11 79.6 6.6 57 217-273 8-68 (203)
105 2h57_A ADP-ribosylation factor 98.4 4.3E-07 1.5E-11 79.1 6.1 56 216-273 20-78 (190)
106 3clv_A RAB5 protein, putative; 98.4 4.8E-07 1.6E-11 78.7 6.4 26 216-241 6-31 (208)
107 1vg8_A RAS-related protein RAB 98.4 3.2E-07 1.1E-11 80.8 5.2 57 216-273 7-68 (207)
108 1m2o_B GTP-binding protein SAR 98.4 3.8E-07 1.3E-11 79.9 5.6 56 217-274 23-79 (190)
109 3j2k_7 ERF3, eukaryotic polype 98.4 3.1E-07 1E-11 91.8 5.6 58 216-273 16-106 (439)
110 2ce2_X GTPase HRAS; signaling 98.3 6.9E-07 2.4E-11 75.0 6.9 55 218-274 4-63 (166)
111 2fh5_B SR-beta, signal recogni 98.3 4.5E-07 1.5E-11 80.6 5.7 55 217-273 7-65 (214)
112 3t5g_A GTP-binding protein RHE 98.3 6.5E-07 2.2E-11 77.1 6.5 56 217-274 6-66 (181)
113 2il1_A RAB12; G-protein, GDP, 98.3 5.1E-07 1.7E-11 79.1 5.7 57 216-273 25-86 (192)
114 2hxs_A RAB-26, RAS-related pro 98.3 5.1E-07 1.7E-11 77.3 5.5 58 216-274 5-68 (178)
115 2a9k_A RAS-related protein RAL 98.3 8E-07 2.7E-11 76.5 6.7 55 217-273 18-77 (187)
116 4gzl_A RAS-related C3 botulinu 98.3 7E-07 2.4E-11 79.1 6.4 56 216-273 29-89 (204)
117 2bov_A RAla, RAS-related prote 98.3 8.9E-07 3E-11 77.7 6.9 56 216-273 13-73 (206)
118 1f6b_A SAR1; gtpases, N-termin 98.3 3.5E-07 1.2E-11 80.8 4.2 55 217-273 25-80 (198)
119 1r8s_A ADP-ribosylation factor 98.3 5.9E-07 2E-11 75.8 5.4 54 218-273 1-55 (164)
120 3con_A GTPase NRAS; structural 98.3 8.1E-07 2.8E-11 77.2 6.5 55 217-273 21-80 (190)
121 4djt_A GTP-binding nuclear pro 98.3 4.7E-07 1.6E-11 80.7 5.0 59 216-274 10-73 (218)
122 2cjw_A GTP-binding protein GEM 98.3 2.5E-07 8.6E-12 81.4 3.1 57 217-273 6-67 (192)
123 2a5j_A RAS-related protein RAB 98.3 6.3E-07 2.2E-11 78.2 5.7 58 216-273 20-81 (191)
124 2bcg_Y Protein YP2, GTP-bindin 98.3 7E-07 2.4E-11 78.8 5.8 57 216-273 7-68 (206)
125 4bas_A ADP-ribosylation factor 98.3 6.6E-07 2.3E-11 78.1 5.6 56 216-273 16-74 (199)
126 3sjy_A Translation initiation 98.3 2.9E-06 9.8E-11 83.7 10.7 104 88-200 75-189 (403)
127 1ky3_A GTP-binding protein YPT 98.3 5.2E-07 1.8E-11 77.3 4.6 56 216-272 7-68 (182)
128 2o52_A RAS-related protein RAB 98.3 5.1E-07 1.7E-11 79.7 4.7 57 216-273 24-85 (200)
129 1zd9_A ADP-ribosylation factor 98.3 7.6E-07 2.6E-11 77.6 5.6 56 216-273 21-78 (188)
130 3izq_1 HBS1P, elongation facto 98.3 2.3E-07 8E-12 96.4 2.6 58 216-273 166-256 (611)
131 3oes_A GTPase rhebl1; small GT 98.3 7.6E-07 2.6E-11 78.4 5.6 56 216-273 23-83 (201)
132 2atv_A RERG, RAS-like estrogen 98.3 1.3E-06 4.6E-11 76.4 7.1 56 217-274 28-88 (196)
133 3bc1_A RAS-related protein RAB 98.3 1E-06 3.5E-11 76.2 6.2 57 216-273 10-81 (195)
134 3mca_A HBS1, elongation factor 98.3 1.7E-07 5.7E-12 97.2 1.2 58 216-273 176-266 (592)
135 3kkq_A RAS-related protein M-R 98.3 1.4E-06 4.8E-11 75.1 6.9 56 216-273 17-77 (183)
136 2q3h_A RAS homolog gene family 98.3 8.5E-07 2.9E-11 77.9 5.6 57 216-274 19-80 (201)
137 3q85_A GTP-binding protein REM 98.3 4.8E-07 1.7E-11 76.7 3.9 56 218-274 3-63 (169)
138 2ew1_A RAS-related protein RAB 98.3 1.1E-06 3.8E-11 78.0 6.4 56 216-272 25-85 (201)
139 2gf0_A GTP-binding protein DI- 98.3 1.5E-06 5E-11 75.9 7.0 58 216-274 7-68 (199)
140 2fu5_C RAS-related protein RAB 98.3 2.9E-07 9.8E-12 79.5 2.4 56 217-273 8-68 (183)
141 2iwr_A Centaurin gamma 1; ANK 98.2 1E-06 3.6E-11 75.5 5.7 57 217-274 7-66 (178)
142 3cbq_A GTP-binding protein REM 98.2 4.7E-07 1.6E-11 79.8 3.4 57 216-273 22-83 (195)
143 2yc2_C IFT27, small RAB-relate 98.2 5E-07 1.7E-11 79.4 3.5 57 217-273 20-84 (208)
144 1mh1_A RAC1; GTP-binding, GTPa 98.2 8.3E-07 2.8E-11 76.4 4.8 55 217-273 5-64 (186)
145 3dz8_A RAS-related protein RAB 98.2 3.2E-07 1.1E-11 80.1 2.0 57 216-272 22-82 (191)
146 3c5c_A RAS-like protein 12; GD 98.2 1.1E-06 3.8E-11 76.7 5.3 57 216-274 20-81 (187)
147 3l0i_B RAS-related protein RAB 98.2 5.2E-07 1.8E-11 79.4 3.2 57 216-273 32-93 (199)
148 3cpj_B GTP-binding protein YPT 98.2 1.2E-06 4E-11 78.7 5.7 56 217-273 13-73 (223)
149 3pqc_A Probable GTP-binding pr 98.2 1.8E-05 6.1E-10 68.4 13.1 83 118-200 102-191 (195)
150 3p26_A Elongation factor 1 alp 98.2 4.9E-07 1.7E-11 91.4 3.4 57 217-273 33-122 (483)
151 2gco_A H9, RHO-related GTP-bin 98.2 1.2E-06 4E-11 77.3 5.4 57 216-273 24-84 (201)
152 1svi_A GTP-binding protein YSX 98.2 6.8E-06 2.3E-10 71.4 10.1 86 114-199 96-191 (195)
153 3lvq_E ARF-GAP with SH3 domain 98.2 9.8E-07 3.3E-11 89.2 5.3 56 216-273 321-377 (497)
154 2fv8_A H6, RHO-related GTP-bin 98.2 1.6E-06 5.6E-11 76.7 6.0 57 217-274 25-85 (207)
155 2g3y_A GTP-binding protein GEM 98.2 7.4E-07 2.5E-11 80.1 3.8 56 217-272 37-97 (211)
156 3reg_A RHO-like small GTPase; 98.2 1.4E-06 4.9E-11 76.0 5.6 56 216-273 22-82 (194)
157 2b6h_A ADP-ribosylation factor 98.2 1.4E-06 4.8E-11 76.4 5.1 57 216-274 28-85 (192)
158 2j1l_A RHO-related GTP-binding 98.2 2E-06 7E-11 76.7 6.2 56 216-273 33-93 (214)
159 2hup_A RAS-related protein RAB 98.2 1.7E-06 5.9E-11 76.4 5.7 57 216-273 28-89 (201)
160 3iev_A GTP-binding protein ERA 98.1 7.8E-06 2.7E-10 77.6 10.0 113 87-202 58-181 (308)
161 3izy_P Translation initiation 98.1 2.6E-07 8.9E-12 94.4 -0.5 57 216-273 3-63 (537)
162 1nrj_B SR-beta, signal recogni 98.1 8.4E-07 2.9E-11 79.0 2.8 55 216-274 11-67 (218)
163 2f7s_A C25KG, RAS-related prot 98.1 8.6E-07 2.9E-11 78.9 2.8 56 216-272 24-94 (217)
164 3t34_A Dynamin-related protein 98.1 1.9E-06 6.4E-11 83.6 5.3 24 218-241 35-58 (360)
165 3bwd_D RAC-like GTP-binding pr 98.1 8.6E-07 3E-11 76.1 2.3 55 217-273 8-67 (182)
166 3q5d_A Atlastin-1; G protein, 98.1 1.2E-06 4E-11 87.6 3.2 23 218-240 68-90 (447)
167 4bas_A ADP-ribosylation factor 98.1 2.8E-06 9.6E-11 74.0 5.4 108 85-201 60-187 (199)
168 2zej_A Dardarin, leucine-rich 98.1 2.3E-06 8E-11 74.3 4.8 56 218-273 3-67 (184)
169 1m7b_A RND3/RHOE small GTP-bin 98.1 3E-06 1E-10 73.4 5.4 57 216-273 6-66 (184)
170 1r8s_A ADP-ribosylation factor 98.1 7.5E-06 2.6E-10 68.9 7.4 105 86-199 42-158 (164)
171 1wf3_A GTP-binding protein; GT 98.1 1.1E-05 3.7E-10 76.6 9.2 112 86-201 53-171 (301)
172 3q3j_B RHO-related GTP-binding 98.1 3.3E-06 1.1E-10 75.4 5.4 56 216-273 26-86 (214)
173 2atx_A Small GTP binding prote 98.1 2.5E-06 8.4E-11 74.4 4.4 56 217-274 18-78 (194)
174 2j0v_A RAC-like GTP-binding pr 98.1 3.9E-06 1.3E-10 74.3 5.6 56 216-273 8-68 (212)
175 3ihw_A Centg3; RAS, centaurin, 98.0 7.1E-06 2.4E-10 71.4 6.9 55 216-273 19-78 (184)
176 1wb1_A Translation elongation 98.0 1.7E-05 5.7E-10 80.2 10.5 99 103-202 80-188 (482)
177 3llu_A RAS-related GTP-binding 98.0 3.6E-06 1.2E-10 73.8 4.9 59 216-274 19-81 (196)
178 3dpu_A RAB family protein; roc 98.0 5.4E-06 1.9E-10 84.7 6.9 84 187-272 13-108 (535)
179 2wkq_A NPH1-1, RAS-related C3 98.0 4.7E-06 1.6E-10 78.8 6.0 56 216-273 154-214 (332)
180 2h57_A ADP-ribosylation factor 98.0 3.2E-06 1.1E-10 73.5 4.4 105 87-200 66-184 (190)
181 1gwn_A RHO-related GTP-binding 98.0 4.5E-06 1.5E-10 74.2 5.4 56 217-273 28-87 (205)
182 1zo1_I IF2, translation initia 98.0 1E-06 3.4E-11 89.4 1.2 57 216-273 3-62 (501)
183 3t1o_A Gliding protein MGLA; G 98.0 5.5E-06 1.9E-10 71.8 5.7 58 216-273 13-85 (198)
184 3t1o_A Gliding protein MGLA; G 98.0 5.9E-06 2E-10 71.6 5.9 87 114-200 91-189 (198)
185 1kk1_A EIF2gamma; initiation o 98.0 9.5E-06 3.2E-10 80.1 8.1 97 103-200 90-197 (410)
186 1f60_A Elongation factor EEF1A 98.0 9.4E-07 3.2E-11 88.8 0.9 57 217-273 7-96 (458)
187 3o47_A ADP-ribosylation factor 98.0 2.9E-06 9.8E-11 81.5 4.0 53 216-272 164-219 (329)
188 2f9l_A RAB11B, member RAS onco 98.0 8.4E-06 2.9E-10 71.6 6.5 57 217-274 5-66 (199)
189 1upt_A ARL1, ADP-ribosylation 98.0 2.9E-06 9.8E-11 71.9 3.2 86 115-200 69-166 (171)
190 1xzp_A Probable tRNA modificat 98.0 1.7E-05 5.8E-10 80.1 9.4 87 113-200 316-402 (482)
191 3bc1_A RAS-related protein RAB 98.0 8.2E-06 2.8E-10 70.4 6.2 106 87-201 69-183 (195)
192 1u8z_A RAS-related protein RAL 98.0 9.9E-06 3.4E-10 68.0 6.4 103 88-199 52-163 (168)
193 1zd9_A ADP-ribosylation factor 98.0 1.4E-05 4.8E-10 69.4 7.6 105 87-200 66-182 (188)
194 1wb1_A Translation elongation 98.0 2E-06 7E-11 86.9 2.3 56 217-272 19-83 (482)
195 3th5_A RAS-related C3 botulinu 97.2 1E-06 3.5E-11 77.7 0.0 55 217-273 30-89 (204)
196 1d2e_A Elongation factor TU (E 98.0 4.3E-06 1.5E-10 82.3 4.4 57 217-273 3-77 (397)
197 2qm8_A GTPase/ATPase; G protei 98.0 4.5E-06 1.6E-10 80.4 4.5 23 217-239 55-77 (337)
198 2f7s_A C25KG, RAS-related prot 98.0 2.2E-05 7.4E-10 69.7 8.6 103 87-200 83-196 (217)
199 1zun_B Sulfate adenylate trans 97.9 4.6E-06 1.6E-10 83.1 4.4 25 217-241 24-48 (434)
200 3t5g_A GTP-binding protein RHE 97.9 7.4E-06 2.5E-10 70.3 5.2 85 116-200 73-166 (181)
201 2elf_A Protein translation elo 97.9 3E-06 1E-10 82.8 2.9 47 219-274 23-72 (370)
202 2c78_A Elongation factor TU-A; 97.9 2.7E-06 9.3E-11 83.9 2.7 58 217-274 11-87 (405)
203 1oix_A RAS-related protein RAB 97.9 1E-05 3.4E-10 70.8 6.0 57 217-274 29-90 (191)
204 1ksh_A ARF-like protein 2; sma 97.9 6.4E-06 2.2E-10 71.1 4.6 105 87-200 61-177 (186)
205 3tr5_A RF-3, peptide chain rel 97.9 1.4E-06 4.7E-11 89.1 0.3 57 218-274 14-94 (528)
206 1kk1_A EIF2gamma; initiation o 97.9 4.3E-06 1.5E-10 82.6 3.8 41 216-256 9-51 (410)
207 2qag_A Septin-2, protein NEDD5 97.9 5E-06 1.7E-10 80.9 4.2 58 216-273 36-106 (361)
208 2g6b_A RAS-related protein RAB 97.9 7.6E-06 2.6E-10 69.9 4.8 104 88-200 60-171 (180)
209 1s0u_A EIF-2-gamma, translatio 97.9 1.1E-05 3.7E-10 79.6 6.5 97 103-200 88-195 (408)
210 1zj6_A ADP-ribosylation factor 97.9 1.1E-05 3.7E-10 69.9 5.8 105 87-200 59-175 (187)
211 2dyk_A GTP-binding protein; GT 97.9 1.3E-05 4.4E-10 67.1 6.0 87 110-199 69-158 (161)
212 2p67_A LAO/AO transport system 97.9 4.6E-06 1.6E-10 80.4 3.5 38 216-253 55-98 (341)
213 2b6h_A ADP-ribosylation factor 97.9 8.9E-06 3E-10 71.2 4.7 105 86-199 71-187 (192)
214 3gee_A MNME, tRNA modification 97.9 1.9E-05 6.5E-10 79.6 7.7 83 116-200 308-395 (476)
215 2a9k_A RAS-related protein RAL 97.9 1.3E-05 4.5E-10 68.7 5.6 88 113-200 82-178 (187)
216 3cph_A RAS-related protein SEC 97.9 1.4E-05 4.7E-10 70.5 5.5 88 114-201 86-180 (213)
217 3j2k_7 ERF3, eukaryotic polype 97.9 4.1E-05 1.4E-09 76.4 9.6 91 104-195 103-217 (439)
218 1zun_B Sulfate adenylate trans 97.9 2.6E-05 8.8E-10 77.6 8.1 88 104-192 112-213 (434)
219 1z0f_A RAB14, member RAS oncog 97.8 1.4E-05 4.8E-10 68.0 5.2 104 87-199 63-174 (179)
220 2efe_B Small GTP-binding prote 97.8 1.1E-05 3.7E-10 69.1 4.3 88 113-200 77-172 (181)
221 1jny_A EF-1-alpha, elongation 97.8 5.9E-06 2E-10 82.3 2.6 57 217-273 6-95 (435)
222 3sjy_A Translation initiation 97.8 6.4E-06 2.2E-10 81.2 2.7 25 216-240 7-31 (403)
223 1fzq_A ADP-ribosylation factor 97.8 3.9E-05 1.3E-09 66.3 7.4 104 87-199 59-174 (181)
224 2y8e_A RAB-protein 6, GH09086P 97.8 1.2E-05 4E-10 68.5 3.8 88 113-200 79-174 (179)
225 1s0u_A EIF-2-gamma, translatio 97.8 1.2E-05 4.1E-10 79.4 4.2 39 217-255 8-48 (408)
226 1kao_A RAP2A; GTP-binding prot 97.8 1.8E-05 6E-10 66.3 4.6 86 114-199 68-162 (167)
227 3p26_A Elongation factor 1 alp 97.8 2.8E-05 9.7E-10 78.4 6.9 97 87-192 110-227 (483)
228 4dsu_A GTPase KRAS, isoform 2B 97.8 3.5E-05 1.2E-09 66.1 6.6 88 113-200 68-163 (189)
229 1lnz_A SPO0B-associated GTP-bi 97.8 2.1E-05 7.2E-10 75.9 5.6 90 111-201 227-328 (342)
230 2nzj_A GTP-binding protein REM 97.8 3.8E-05 1.3E-09 65.1 6.6 85 116-200 73-166 (175)
231 2fu5_C RAS-related protein RAB 97.8 1.8E-05 6E-10 68.0 4.5 85 115-201 75-169 (183)
232 2xex_A Elongation factor G; GT 97.8 7.1E-06 2.4E-10 86.5 2.4 58 217-274 10-87 (693)
233 3p32_A Probable GTPase RV1496/ 97.8 1.3E-05 4.4E-10 77.7 3.9 24 216-239 78-101 (355)
234 2bov_A RAla, RAS-related prote 97.8 4E-05 1.4E-09 67.0 6.7 88 113-200 78-174 (206)
235 2erx_A GTP-binding protein DI- 97.7 2.1E-05 7.2E-10 66.3 4.5 88 114-201 68-165 (172)
236 3con_A GTPase NRAS; structural 97.7 6.7E-05 2.3E-09 64.8 7.8 105 87-200 68-180 (190)
237 2j1l_A RHO-related GTP-binding 97.7 4.5E-05 1.5E-09 67.8 6.8 104 88-200 82-206 (214)
238 1r2q_A RAS-related protein RAB 97.7 1.4E-05 4.7E-10 67.3 3.3 87 113-199 71-165 (170)
239 1z2a_A RAS-related protein RAB 97.7 1.7E-05 5.9E-10 66.7 3.9 86 114-199 71-163 (168)
240 2il1_A RAB12; G-protein, GDP, 97.7 5.5E-05 1.9E-09 65.9 7.2 103 88-199 75-186 (192)
241 2j0v_A RAC-like GTP-binding pr 97.7 3.2E-05 1.1E-09 68.2 5.7 85 116-200 76-177 (212)
242 2yc2_C IFT27, small RAB-relate 97.7 3E-05 1E-09 67.8 5.3 105 87-200 72-189 (208)
243 2hup_A RAS-related protein RAB 97.7 8.7E-05 3E-09 65.3 8.4 104 88-200 78-190 (201)
244 2lkc_A Translation initiation 97.7 8.5E-05 2.9E-09 63.2 8.1 85 116-201 74-169 (178)
245 2fg5_A RAB-22B, RAS-related pr 97.7 3.2E-05 1.1E-09 67.3 5.4 88 113-200 88-183 (192)
246 3clv_A RAB5 protein, putative; 97.7 3.4E-05 1.1E-09 66.8 5.5 104 88-200 93-201 (208)
247 2h17_A ADP-ribosylation factor 97.7 3E-05 1E-09 66.7 5.2 84 115-198 83-178 (181)
248 2x77_A ADP-ribosylation factor 97.7 3.5E-05 1.2E-09 66.6 5.5 85 116-200 85-181 (189)
249 1c1y_A RAS-related protein RAP 97.7 2.9E-05 1E-09 65.2 4.8 85 115-199 69-163 (167)
250 3tw8_B RAS-related protein RAB 97.7 5.3E-05 1.8E-09 64.4 6.5 87 116-202 77-170 (181)
251 2qu8_A Putative nucleolar GTP- 97.7 0.00015 5.1E-09 65.0 9.7 87 115-201 103-203 (228)
252 1moz_A ARL1, ADP-ribosylation 97.7 3.9E-05 1.3E-09 65.7 5.4 87 115-201 80-178 (183)
253 2wsm_A Hydrogenase expression/ 97.7 3E-06 1E-10 75.6 -1.9 36 217-252 30-70 (221)
254 2hxs_A RAB-26, RAS-related pro 97.7 3.2E-05 1.1E-09 65.9 4.5 86 115-200 74-170 (178)
255 1r5b_A Eukaryotic peptide chai 97.7 1.1E-05 3.7E-10 81.2 1.7 57 217-273 43-132 (467)
256 2h5e_A Peptide chain release f 97.7 1.6E-05 5.5E-10 81.2 3.0 58 217-274 13-94 (529)
257 1g16_A RAS-related protein SEC 97.7 2.8E-05 9.5E-10 65.5 4.0 87 114-200 69-162 (170)
258 3tkl_A RAS-related protein RAB 97.7 3.3E-05 1.1E-09 67.0 4.5 88 113-200 81-176 (196)
259 1ky3_A GTP-binding protein YPT 97.7 6.5E-05 2.2E-09 63.9 6.3 104 88-200 58-175 (182)
260 1g7s_A Translation initiation 97.6 1E-05 3.5E-10 83.7 1.4 56 216-273 4-81 (594)
261 1ek0_A Protein (GTP-binding pr 97.6 2.8E-05 9.6E-10 65.4 3.7 87 113-199 68-165 (170)
262 1z0j_A RAB-22, RAS-related pro 97.6 3.3E-05 1.1E-09 65.0 4.1 87 113-199 71-165 (170)
263 3q85_A GTP-binding protein REM 97.6 7.3E-05 2.5E-09 63.0 6.3 84 116-199 71-163 (169)
264 2hf9_A Probable hydrogenase ni 97.6 2.1E-05 7E-10 70.3 2.9 24 217-240 38-61 (226)
265 3sop_A Neuronal-specific septi 97.6 3.3E-05 1.1E-09 72.1 4.3 57 218-274 3-72 (270)
266 3o47_A ADP-ribosylation factor 97.6 5.3E-05 1.8E-09 72.6 5.6 105 87-200 208-324 (329)
267 3dz8_A RAS-related protein RAB 97.6 0.00014 4.8E-09 63.1 7.9 106 86-200 70-183 (191)
268 2qag_B Septin-6, protein NEDD5 97.6 5.4E-05 1.9E-09 75.0 5.8 57 218-274 43-107 (427)
269 2o52_A RAS-related protein RAB 97.6 4.8E-05 1.6E-09 66.8 4.9 104 88-200 74-185 (200)
270 2gf0_A GTP-binding protein DI- 97.6 8.6E-05 2.9E-09 64.4 6.4 88 114-201 73-169 (199)
271 1zbd_A Rabphilin-3A; G protein 97.6 6.3E-05 2.2E-09 65.8 5.5 105 87-200 56-168 (203)
272 3kkq_A RAS-related protein M-R 97.6 0.00016 5.6E-09 61.8 7.8 86 115-200 84-179 (183)
273 2fh5_B SR-beta, signal recogni 97.6 0.00011 3.7E-09 64.9 6.8 68 87-163 53-131 (214)
274 1ega_A Protein (GTP-binding pr 97.6 0.00013 4.5E-09 68.9 7.8 85 116-201 84-173 (301)
275 2p5s_A RAS and EF-hand domain 97.6 7.3E-05 2.5E-09 65.4 5.6 88 112-199 92-193 (199)
276 2c78_A Elongation factor TU-A; 97.6 8.4E-05 2.9E-09 73.1 6.5 94 87-189 74-180 (405)
277 2gj8_A MNME, tRNA modification 97.6 3.7E-05 1.2E-09 66.0 3.3 83 114-201 77-164 (172)
278 4djt_A GTP-binding nuclear pro 97.6 0.00013 4.3E-09 64.7 6.9 86 116-201 80-173 (218)
279 3bwd_D RAC-like GTP-binding pr 97.5 9.2E-05 3.1E-09 63.2 5.8 84 116-199 75-177 (182)
280 2atv_A RERG, RAS-like estrogen 97.5 5.5E-05 1.9E-09 65.9 4.5 86 114-199 92-187 (196)
281 3p32_A Probable GTPase RV1496/ 97.5 0.00011 3.8E-09 71.0 6.9 84 116-201 188-282 (355)
282 1z08_A RAS-related protein RAB 97.5 6.8E-05 2.3E-09 63.1 4.8 84 116-199 74-165 (170)
283 4dkx_A RAS-related protein RAB 97.5 7.5E-05 2.6E-09 67.2 5.3 56 217-273 13-73 (216)
284 2bme_A RAB4A, RAS-related prot 97.5 4.9E-05 1.7E-09 65.2 3.9 89 111-199 73-169 (186)
285 2e87_A Hypothetical protein PH 97.5 0.00042 1.4E-08 66.9 10.7 85 117-201 243-334 (357)
286 2gf9_A RAS-related protein RAB 97.5 0.00015 5.3E-09 62.6 6.9 86 115-200 89-182 (189)
287 2oil_A CATX-8, RAS-related pro 97.5 0.00021 7.3E-09 61.8 7.8 87 114-200 91-185 (193)
288 1f6b_A SAR1; gtpases, N-termin 97.5 4.6E-05 1.6E-09 66.9 3.4 83 116-198 88-194 (198)
289 3geh_A MNME, tRNA modification 97.5 3.7E-05 1.3E-09 77.2 3.0 83 116-200 299-381 (462)
290 3avx_A Elongation factor TS, e 97.5 4.2E-05 1.5E-09 83.9 3.6 58 216-273 295-370 (1289)
291 3q72_A GTP-binding protein RAD 97.5 0.00012 4.1E-09 61.4 5.7 88 113-200 65-161 (166)
292 3gj0_A GTP-binding nuclear pro 97.5 4.6E-05 1.6E-09 67.9 3.2 85 115-199 82-171 (221)
293 1dar_A EF-G, elongation factor 97.5 4.3E-05 1.5E-09 80.5 3.4 58 217-274 12-89 (691)
294 1tq4_A IIGP1, interferon-induc 97.5 0.00012 4.2E-09 72.3 6.5 56 218-274 70-132 (413)
295 1mh1_A RAC1; GTP-binding, GTPa 97.5 8.1E-05 2.8E-09 63.6 4.6 85 116-200 72-177 (186)
296 3lvq_E ARF-GAP with SH3 domain 97.5 5.1E-05 1.7E-09 76.5 3.8 107 86-201 364-482 (497)
297 2fn4_A P23, RAS-related protei 97.5 0.00016 5.5E-09 61.4 6.5 86 115-200 75-169 (181)
298 1z06_A RAS-related protein RAB 97.5 0.00015 5.1E-09 62.7 6.3 100 88-196 69-181 (189)
299 3c5h_A Glucocorticoid receptor 97.5 0.00016 5.6E-09 66.4 6.9 80 120-199 162-251 (255)
300 2iwr_A Centaurin gamma 1; ANK 97.5 0.00031 1.1E-08 59.8 8.2 81 116-199 68-165 (178)
301 2q3h_A RAS homolog gene family 97.5 0.00015 5.1E-09 63.3 6.3 85 116-200 87-192 (201)
302 3tr5_A RF-3, peptide chain rel 97.5 0.00014 4.9E-09 74.1 6.9 67 87-162 81-149 (528)
303 2ew1_A RAS-related protein RAB 97.5 7.3E-05 2.5E-09 66.0 4.1 89 112-200 90-186 (201)
304 1wms_A RAB-9, RAB9, RAS-relate 97.5 0.0001 3.5E-09 62.6 4.9 103 88-199 56-170 (177)
305 2a5j_A RAS-related protein RAB 97.5 0.00025 8.4E-09 61.5 7.5 86 114-199 87-180 (191)
306 2atx_A Small GTP binding prote 97.5 0.00019 6.5E-09 62.2 6.8 83 116-198 85-188 (194)
307 2ce2_X GTPase HRAS; signaling 97.5 0.00037 1.2E-08 57.9 8.2 85 115-199 69-161 (166)
308 1jny_A EF-1-alpha, elongation 97.4 0.00012 4E-09 72.9 5.7 98 87-193 83-203 (435)
309 2gco_A H9, RHO-related GTP-bin 97.4 0.0002 6.7E-09 62.8 6.6 84 116-199 92-196 (201)
310 3iby_A Ferrous iron transport 97.4 3.2E-05 1.1E-09 71.5 1.4 80 119-200 82-164 (256)
311 2cxx_A Probable GTP-binding pr 97.4 0.00073 2.5E-08 57.9 10.1 83 118-200 80-181 (190)
312 2elf_A Protein translation elo 97.4 0.00037 1.3E-08 67.8 8.9 96 104-202 68-179 (370)
313 3reg_A RHO-like small GTPase; 97.4 0.00012 4.2E-09 63.5 4.9 85 116-200 90-185 (194)
314 2ywe_A GTP-binding protein LEP 97.4 0.00021 7.2E-09 73.9 7.4 96 104-201 81-182 (600)
315 1d2e_A Elongation factor TU (E 97.4 0.00026 8.8E-09 69.5 7.7 94 87-189 65-171 (397)
316 3cb4_D GTP-binding protein LEP 97.4 7E-05 2.4E-09 77.5 3.6 58 217-274 4-83 (599)
317 3a1s_A Iron(II) transport prot 97.4 7.5E-05 2.6E-09 69.0 3.3 80 119-200 82-164 (258)
318 1vg8_A RAS-related protein RAB 97.4 0.00021 7.3E-09 62.4 6.1 85 116-200 76-172 (207)
319 2qnr_A Septin-2, protein NEDD5 97.4 8.4E-05 2.9E-09 70.3 3.6 25 216-240 17-41 (301)
320 3th5_A RAS-related C3 botulinu 96.5 2.6E-05 8.8E-10 68.6 0.0 94 104-198 86-200 (204)
321 3izq_1 HBS1P, elongation facto 97.3 7.8E-05 2.7E-09 77.4 3.3 97 88-193 245-362 (611)
322 3c5h_A Glucocorticoid receptor 97.3 0.00011 3.7E-09 67.6 3.9 25 216-240 18-51 (255)
323 4gzl_A RAS-related C3 botulinu 97.3 0.00019 6.4E-09 63.2 5.3 84 116-199 97-201 (204)
324 3cbq_A GTP-binding protein REM 97.3 0.00037 1.3E-08 61.0 7.1 84 116-199 92-184 (195)
325 1r5b_A Eukaryotic peptide chai 97.3 0.00029 9.9E-09 70.7 7.2 90 103-193 128-242 (467)
326 1m2o_B GTP-binding protein SAR 97.3 0.00019 6.5E-09 62.4 5.1 83 116-198 86-187 (190)
327 2qag_C Septin-7; cell cycle, c 97.3 7.8E-05 2.7E-09 73.8 2.7 27 215-241 29-55 (418)
328 2bcg_Y Protein YP2, GTP-bindin 97.3 0.00032 1.1E-08 61.4 6.4 85 116-200 76-168 (206)
329 2j37_W Signal recognition part 97.3 0.0001 3.4E-09 74.7 3.4 23 216-238 100-122 (504)
330 2ywe_A GTP-binding protein LEP 97.3 5.7E-05 1.9E-09 78.1 1.5 58 217-274 6-85 (600)
331 1yrb_A ATP(GTP)binding protein 97.3 0.00066 2.3E-08 61.9 8.6 112 87-202 108-256 (262)
332 3avx_A Elongation factor TS, e 97.3 0.0008 2.7E-08 74.0 10.4 96 103-199 366-482 (1289)
333 2fv8_A H6, RHO-related GTP-bin 97.3 0.00028 9.4E-09 62.1 5.5 85 116-200 92-197 (207)
334 1n0u_A EF-2, elongation factor 97.3 0.00012 4E-09 78.9 3.5 25 217-241 19-43 (842)
335 3oes_A GTPase rhebl1; small GT 97.3 0.00026 8.8E-09 61.9 5.1 85 116-200 91-184 (201)
336 3ihw_A Centg3; RAS, centaurin, 97.3 0.00057 1.9E-08 59.1 7.2 80 117-199 82-176 (184)
337 2rdo_7 EF-G, elongation factor 97.2 0.00019 6.7E-09 75.6 4.9 58 217-274 10-94 (704)
338 1f60_A Elongation factor EEF1A 97.2 0.00013 4.5E-09 73.1 3.4 98 87-193 84-202 (458)
339 3i8s_A Ferrous iron transport 97.2 4.7E-05 1.6E-09 70.9 -0.1 81 118-200 83-166 (274)
340 1udx_A The GTP-binding protein 97.2 0.0006 2.1E-08 67.4 7.9 88 115-202 230-324 (416)
341 3q3j_B RHO-related GTP-binding 97.2 0.00051 1.7E-08 61.0 6.7 85 116-200 94-200 (214)
342 3qq5_A Small GTP-binding prote 97.2 0.00012 4.1E-09 72.6 2.7 87 112-201 105-194 (423)
343 2qtf_A Protein HFLX, GTP-bindi 97.2 0.00078 2.7E-08 65.4 8.0 92 111-202 248-353 (364)
344 3llu_A RAS-related GTP-binding 97.1 0.0014 4.7E-08 57.0 8.5 82 115-197 90-191 (196)
345 4dkx_A RAS-related protein RAB 97.1 0.00046 1.6E-08 61.9 5.5 85 114-198 79-171 (216)
346 1yrb_A ATP(GTP)binding protein 97.1 5.8E-05 2E-09 69.0 -0.6 34 217-250 14-52 (262)
347 3cpj_B GTP-binding protein YPT 97.1 0.00025 8.5E-09 63.3 3.4 85 116-200 81-173 (223)
348 3b1v_A Ferrous iron uptake tra 97.1 0.00038 1.3E-08 64.8 4.7 77 119-200 79-161 (272)
349 3izy_P Translation initiation 97.1 2.2E-05 7.5E-10 80.2 -4.2 119 116-234 71-211 (537)
350 3c5c_A RAS-like protein 12; GD 97.1 0.00055 1.9E-08 59.2 5.3 85 115-199 86-182 (187)
351 2wkq_A NPH1-1, RAS-related C3 97.0 0.00061 2.1E-08 64.1 5.6 85 115-199 221-326 (332)
352 2wji_A Ferrous iron transport 97.0 0.00019 6.6E-09 60.8 1.7 77 119-199 80-161 (165)
353 3k53_A Ferrous iron transport 97.0 0.00015 5.2E-09 67.1 1.0 82 118-201 79-164 (271)
354 3t5d_A Septin-7; GTP-binding p 97.0 0.0011 3.9E-08 61.3 6.8 79 121-199 116-200 (274)
355 3r7w_A Gtpase1, GTP-binding pr 96.9 0.0024 8.3E-08 60.2 8.4 77 115-192 75-170 (307)
356 3dpu_A RAB family protein; roc 96.8 0.001 3.5E-08 67.7 5.6 84 116-201 117-206 (535)
357 1g7s_A Translation initiation 96.8 0.0032 1.1E-07 65.0 9.3 86 117-202 90-217 (594)
358 2www_A Methylmalonic aciduria 96.8 0.0029 1E-07 60.9 8.2 104 84-201 163-277 (349)
359 1m7b_A RND3/RHOE small GTP-bin 96.8 0.0011 3.8E-08 56.8 4.8 84 116-199 74-179 (184)
360 3ney_A 55 kDa erythrocyte memb 96.8 0.00012 4E-09 65.2 -1.7 54 219-272 21-76 (197)
361 1gwn_A RHO-related GTP-binding 96.8 0.0011 3.8E-08 58.4 4.7 84 116-199 95-200 (205)
362 2aka_B Dynamin-1; fusion prote 96.8 0.00046 1.6E-08 64.2 2.3 90 110-199 151-249 (299)
363 2dy1_A Elongation factor G; tr 96.7 0.00082 2.8E-08 70.4 4.2 58 217-274 9-86 (665)
364 3zvr_A Dynamin-1; hydrolase, D 96.7 0.0015 5.1E-08 69.2 6.0 90 110-199 176-274 (772)
365 2v3c_C SRP54, signal recogniti 96.7 0.00052 1.8E-08 68.2 2.4 23 217-239 99-121 (432)
366 1jwy_B Dynamin A GTPase domain 96.7 0.0025 8.7E-08 59.7 7.1 90 110-201 157-260 (315)
367 3lxx_A GTPase IMAP family memb 96.7 0.0066 2.2E-07 54.6 9.6 83 116-199 108-210 (239)
368 1pui_A ENGB, probable GTP-bind 96.7 0.008 2.7E-07 52.4 9.9 84 119-202 107-198 (210)
369 2j69_A Bacterial dynamin-like 96.7 0.0029 1E-07 66.6 8.0 105 88-200 174-322 (695)
370 2zej_A Dardarin, leucine-rich 96.7 0.00096 3.3E-08 57.4 3.5 86 115-200 74-175 (184)
371 2wjg_A FEOB, ferrous iron tran 96.7 0.00034 1.2E-08 60.1 0.5 79 119-201 84-167 (188)
372 3l0i_B RAS-related protein RAB 96.7 0.00011 3.9E-09 64.1 -2.6 83 116-198 101-191 (199)
373 3r7w_B Gtpase2, GTP-binding pr 96.6 0.0012 4E-08 63.2 4.1 56 219-274 1-58 (331)
374 2p67_A LAO/AO transport system 96.6 0.0027 9.2E-08 60.9 6.7 102 85-200 146-258 (341)
375 4ido_A Atlastin-1; GTPase, GTP 96.6 0.0031 1.1E-07 62.8 6.8 61 218-278 68-156 (457)
376 3lxw_A GTPase IMAP family memb 96.5 0.0029 9.9E-08 57.7 6.0 112 87-202 69-207 (247)
377 3mca_A HBS1, elongation factor 96.5 0.0016 5.5E-08 67.2 4.3 87 104-191 263-371 (592)
378 2g3y_A GTP-binding protein GEM 96.4 0.0044 1.5E-07 55.2 6.3 82 118-199 109-199 (211)
379 2wsm_A Hydrogenase expression/ 96.3 0.0041 1.4E-07 54.9 5.6 102 84-200 105-211 (221)
380 2dy1_A Elongation factor G; tr 96.2 0.0084 2.9E-07 62.7 7.9 56 104-160 82-139 (665)
381 1dar_A EF-G, elongation factor 96.2 0.0077 2.6E-07 63.3 7.5 67 87-162 76-144 (691)
382 1ko7_A HPR kinase/phosphatase; 96.1 0.005 1.7E-07 58.5 5.0 96 141-241 73-168 (314)
383 2h5e_A Peptide chain release f 96.1 0.0045 1.5E-07 63.0 5.0 68 87-163 81-150 (529)
384 1zo1_I IF2, translation initia 96.1 0.00035 1.2E-08 70.7 -3.3 83 116-198 70-162 (501)
385 3szr_A Interferon-induced GTP- 96.0 0.0049 1.7E-07 63.8 5.1 23 218-240 46-68 (608)
386 2xtp_A GTPase IMAP family memb 95.9 0.0036 1.2E-07 57.1 3.0 110 87-201 70-206 (260)
387 1wxq_A GTP-binding protein; st 95.9 0.0084 2.9E-07 58.8 5.7 48 147-194 214-261 (397)
388 1kgd_A CASK, peripheral plasma 95.9 0.0023 7.9E-08 55.3 1.4 37 219-255 7-44 (180)
389 2cjw_A GTP-binding protein GEM 95.8 0.017 5.7E-07 50.0 6.9 83 117-199 77-168 (192)
390 3vqt_A RF-3, peptide chain rel 95.8 0.014 4.7E-07 59.7 7.2 58 103-161 107-166 (548)
391 2qag_A Septin-2, protein NEDD5 95.8 0.0083 2.8E-07 58.0 5.0 79 122-200 147-231 (361)
392 2xex_A Elongation factor G; GT 95.7 0.012 4.2E-07 61.7 6.5 67 87-162 74-142 (693)
393 2qm8_A GTPase/ATPase; G protei 95.7 0.017 5.8E-07 55.2 6.7 83 117-201 165-259 (337)
394 2rdo_7 EF-G, elongation factor 95.6 0.035 1.2E-06 58.4 9.6 66 88-162 82-149 (704)
395 3vqt_A RF-3, peptide chain rel 95.5 0.011 3.9E-07 60.3 5.0 57 219-275 33-113 (548)
396 3dm5_A SRP54, signal recogniti 95.4 0.02 6.9E-07 56.8 6.5 23 216-238 99-121 (443)
397 2hf9_A Probable hydrogenase ni 95.4 0.032 1.1E-06 49.2 7.2 77 121-199 140-220 (226)
398 2x2e_A Dynamin-1; nitration, h 95.3 0.009 3.1E-07 57.4 3.5 90 110-199 156-254 (353)
399 1nrj_B SR-beta, signal recogni 95.3 0.013 4.4E-07 51.4 4.2 49 117-165 79-138 (218)
400 3j25_A Tetracycline resistance 95.2 0.0093 3.2E-07 62.1 3.5 58 103-161 74-133 (638)
401 1ye8_A Protein THEP1, hypothet 95.1 0.0068 2.3E-07 52.5 1.7 23 219-241 2-24 (178)
402 3t34_A Dynamin-related protein 94.9 0.048 1.6E-06 52.3 7.3 85 111-197 163-255 (360)
403 1zp6_A Hypothetical protein AT 94.8 0.012 4E-07 50.7 2.4 23 218-240 10-32 (191)
404 1lvg_A Guanylate kinase, GMP k 94.8 0.0086 2.9E-07 52.5 1.5 22 219-240 6-27 (198)
405 3tau_A Guanylate kinase, GMP k 94.7 0.012 4E-07 52.0 2.2 24 218-241 9-32 (208)
406 3c8u_A Fructokinase; YP_612366 94.7 0.014 4.9E-07 51.3 2.7 24 217-240 22-45 (208)
407 2qpt_A EH domain-containing pr 94.6 0.05 1.7E-06 55.5 7.0 61 112-172 180-243 (550)
408 1np6_A Molybdopterin-guanine d 94.5 0.012 4.1E-07 50.9 1.6 22 219-240 8-29 (174)
409 3tr0_A Guanylate kinase, GMP k 94.4 0.013 4.3E-07 51.0 1.6 22 219-240 9-30 (205)
410 1znw_A Guanylate kinase, GMP k 94.3 0.013 4.4E-07 51.6 1.5 23 219-241 22-44 (207)
411 2qor_A Guanylate kinase; phosp 94.2 0.012 4.1E-07 51.6 1.1 23 218-240 13-35 (204)
412 1s96_A Guanylate kinase, GMP k 94.1 0.016 5.6E-07 51.9 1.7 23 219-241 18-40 (219)
413 1z6g_A Guanylate kinase; struc 94.1 0.016 5.4E-07 51.7 1.5 22 219-240 25-46 (218)
414 2ged_A SR-beta, signal recogni 94.0 0.048 1.6E-06 46.5 4.6 57 114-170 112-179 (193)
415 2f1r_A Molybdopterin-guanine d 94.0 0.0087 3E-07 51.6 -0.2 22 219-240 4-25 (171)
416 3j25_A Tetracycline resistance 94.0 0.014 4.8E-07 60.8 1.3 57 219-275 4-80 (638)
417 2f9l_A RAB11B, member RAS onco 94.0 0.11 3.7E-06 44.8 6.8 86 116-201 73-166 (199)
418 3asz_A Uridine kinase; cytidin 93.9 0.022 7.6E-07 49.8 2.3 24 217-240 6-29 (211)
419 3a00_A Guanylate kinase, GMP k 93.9 0.017 5.9E-07 49.8 1.5 22 220-241 4-25 (186)
420 2v9p_A Replication protein E1; 93.8 0.02 6.7E-07 54.1 1.7 21 219-239 128-148 (305)
421 2j41_A Guanylate kinase; GMP, 93.8 0.024 8.1E-07 49.2 2.1 23 218-240 7-29 (207)
422 3l82_B F-box only protein 4; T 93.8 0.12 4E-06 46.3 6.6 86 108-193 113-213 (227)
423 1kag_A SKI, shikimate kinase I 93.7 0.021 7.1E-07 48.2 1.6 22 219-240 6-27 (173)
424 2pcj_A ABC transporter, lipopr 93.7 0.023 8E-07 51.0 1.9 22 219-240 32-53 (224)
425 2bdt_A BH3686; alpha-beta prot 93.6 0.022 7.4E-07 49.1 1.5 21 219-239 4-24 (189)
426 4eun_A Thermoresistant glucoki 93.6 0.026 8.9E-07 49.2 2.0 23 218-240 30-52 (200)
427 3b85_A Phosphate starvation-in 93.6 0.029 9.8E-07 49.9 2.3 29 219-248 24-52 (208)
428 3tif_A Uncharacterized ABC tra 93.5 0.024 8.2E-07 51.3 1.8 23 219-241 33-55 (235)
429 4gp7_A Metallophosphoesterase; 93.5 0.023 7.7E-07 48.5 1.4 20 219-238 11-30 (171)
430 1cip_A Protein (guanine nucleo 93.3 0.014 4.8E-07 56.3 -0.2 104 87-199 192-340 (353)
431 2cbz_A Multidrug resistance-as 93.3 0.027 9.3E-07 51.0 1.8 22 219-240 33-54 (237)
432 1mv5_A LMRA, multidrug resista 93.3 0.028 9.4E-07 51.1 1.8 23 219-241 30-52 (243)
433 1knq_A Gluconate kinase; ALFA/ 93.2 0.037 1.3E-06 46.9 2.4 22 218-239 9-30 (175)
434 3uie_A Adenylyl-sulfate kinase 93.2 0.035 1.2E-06 48.4 2.3 24 217-240 25-48 (200)
435 2eyu_A Twitching motility prot 93.2 0.029 9.9E-07 51.6 1.8 21 219-239 27-47 (261)
436 1g6h_A High-affinity branched- 93.2 0.029 1E-06 51.4 1.8 22 219-240 35-56 (257)
437 2if2_A Dephospho-COA kinase; a 93.2 0.031 1.1E-06 48.6 1.9 21 219-239 3-23 (204)
438 2i3b_A HCR-ntpase, human cance 93.2 0.026 9.1E-07 49.3 1.4 22 219-240 3-24 (189)
439 2ff7_A Alpha-hemolysin translo 93.1 0.03 1E-06 51.1 1.8 22 219-240 37-58 (247)
440 2bbw_A Adenylate kinase 4, AK4 93.1 0.031 1.1E-06 50.4 1.9 22 217-238 27-48 (246)
441 2onk_A Molybdate/tungstate ABC 93.1 0.03 1E-06 50.8 1.8 22 219-240 26-47 (240)
442 4fn5_A EF-G 1, elongation fact 93.1 0.1 3.4E-06 54.9 6.0 60 103-163 92-153 (709)
443 3lnc_A Guanylate kinase, GMP k 93.1 0.031 1E-06 49.9 1.7 22 219-240 29-51 (231)
444 1n0u_A EF-2, elongation factor 93.1 0.039 1.3E-06 59.2 2.8 56 104-160 106-163 (842)
445 1sgw_A Putative ABC transporte 93.1 0.029 1E-06 50.1 1.5 22 219-240 37-58 (214)
446 2pze_A Cystic fibrosis transme 93.0 0.032 1.1E-06 50.2 1.8 22 219-240 36-57 (229)
447 4g1u_C Hemin import ATP-bindin 93.0 0.031 1.1E-06 51.6 1.7 22 219-240 39-60 (266)
448 1b0u_A Histidine permease; ABC 93.0 0.029 1E-06 51.6 1.5 22 219-240 34-55 (262)
449 1cke_A CK, MSSA, protein (cyti 93.0 0.033 1.1E-06 49.2 1.8 23 218-240 6-28 (227)
450 3gfo_A Cobalt import ATP-bindi 92.9 0.033 1.1E-06 51.7 1.8 22 219-240 36-57 (275)
451 2rhm_A Putative kinase; P-loop 92.9 0.041 1.4E-06 47.1 2.2 23 217-239 5-27 (193)
452 1ly1_A Polynucleotide kinase; 92.9 0.039 1.3E-06 46.5 2.0 22 218-239 3-24 (181)
453 2ghi_A Transport protein; mult 92.8 0.035 1.2E-06 51.0 1.8 22 219-240 48-69 (260)
454 2qi9_C Vitamin B12 import ATP- 92.8 0.036 1.2E-06 50.7 1.8 23 219-241 28-50 (249)
455 1ji0_A ABC transporter; ATP bi 92.8 0.036 1.2E-06 50.3 1.8 22 219-240 34-55 (240)
456 2olj_A Amino acid ABC transpor 92.8 0.036 1.2E-06 51.1 1.8 22 219-240 52-73 (263)
457 3kb2_A SPBC2 prophage-derived 92.8 0.035 1.2E-06 46.5 1.6 22 219-240 3-24 (173)
458 2d2e_A SUFC protein; ABC-ATPas 92.7 0.037 1.3E-06 50.5 1.8 22 219-240 31-52 (250)
459 1odf_A YGR205W, hypothetical 3 92.7 0.085 2.9E-06 49.3 4.3 24 216-239 30-53 (290)
460 2zu0_C Probable ATP-dependent 92.7 0.038 1.3E-06 51.0 1.8 22 219-240 48-69 (267)
461 3lw7_A Adenylate kinase relate 92.7 0.039 1.3E-06 46.0 1.7 19 219-237 3-21 (179)
462 1vpl_A ABC transporter, ATP-bi 92.7 0.038 1.3E-06 50.7 1.8 22 219-240 43-64 (256)
463 2ihy_A ABC transporter, ATP-bi 92.6 0.038 1.3E-06 51.4 1.8 22 219-240 49-70 (279)
464 2ixe_A Antigen peptide transpo 92.6 0.038 1.3E-06 51.1 1.8 22 219-240 47-68 (271)
465 1zcb_A G alpha I/13; GTP-bindi 92.6 0.044 1.5E-06 52.9 2.2 92 108-199 212-349 (362)
466 2qt1_A Nicotinamide riboside k 92.6 0.05 1.7E-06 47.5 2.4 24 217-240 21-44 (207)
467 2qnr_A Septin-2, protein NEDD5 92.6 0.15 5.1E-06 47.7 5.8 50 147-197 155-208 (301)
468 1ex7_A Guanylate kinase; subst 92.6 0.036 1.2E-06 48.4 1.4 36 220-255 4-40 (186)
469 2yz2_A Putative ABC transporte 92.6 0.04 1.4E-06 50.8 1.8 22 219-240 35-56 (266)
470 3t61_A Gluconokinase; PSI-biol 92.6 0.042 1.4E-06 47.8 1.8 23 218-240 19-41 (202)
471 3nh6_A ATP-binding cassette SU 92.5 0.025 8.7E-07 53.4 0.4 22 219-240 82-103 (306)
472 2pt7_A CAG-ALFA; ATPase, prote 92.5 0.042 1.4E-06 52.3 1.9 22 219-240 173-194 (330)
473 2nq2_C Hypothetical ABC transp 92.5 0.041 1.4E-06 50.3 1.8 23 219-241 33-55 (253)
474 3aez_A Pantothenate kinase; tr 92.4 0.051 1.8E-06 51.3 2.3 25 216-240 89-113 (312)
475 1jjv_A Dephospho-COA kinase; P 92.4 0.049 1.7E-06 47.4 2.0 22 218-239 3-24 (206)
476 3tui_C Methionine import ATP-b 92.3 0.042 1.4E-06 53.2 1.6 23 219-241 56-78 (366)
477 2jaq_A Deoxyguanosine kinase; 92.3 0.048 1.6E-06 47.0 1.8 22 219-240 2-23 (205)
478 1qhx_A CPT, protein (chloramph 92.3 0.046 1.6E-06 46.2 1.7 22 219-240 5-26 (178)
479 4a74_A DNA repair and recombin 92.2 0.046 1.6E-06 48.1 1.7 22 219-240 27-48 (231)
480 1htw_A HI0065; nucleotide-bind 92.2 0.045 1.5E-06 46.4 1.5 23 219-241 35-57 (158)
481 3cm0_A Adenylate kinase; ATP-b 92.1 0.051 1.7E-06 46.3 1.8 23 217-239 4-26 (186)
482 2gza_A Type IV secretion syste 92.1 0.048 1.6E-06 52.6 1.8 22 219-240 177-198 (361)
483 2yvu_A Probable adenylyl-sulfa 92.1 0.069 2.4E-06 45.7 2.6 24 217-240 13-36 (186)
484 1xjc_A MOBB protein homolog; s 92.1 0.053 1.8E-06 46.6 1.8 21 219-239 6-26 (169)
485 3vaa_A Shikimate kinase, SK; s 92.1 0.052 1.8E-06 47.2 1.8 21 219-239 27-47 (199)
486 1rz3_A Hypothetical protein rb 92.1 0.064 2.2E-06 46.8 2.4 23 217-239 22-44 (201)
487 1nks_A Adenylate kinase; therm 92.1 0.055 1.9E-06 46.1 1.9 21 219-239 3-23 (194)
488 1nij_A Hypothetical protein YJ 92.0 0.055 1.9E-06 51.1 2.0 22 219-240 6-27 (318)
489 2pjz_A Hypothetical protein ST 92.0 0.052 1.8E-06 50.0 1.8 22 219-240 32-53 (263)
490 1y63_A LMAJ004144AAA protein; 92.0 0.057 2E-06 46.4 1.9 24 217-240 10-33 (184)
491 2xxa_A Signal recognition part 91.9 0.099 3.4E-06 51.7 3.8 23 216-238 99-121 (433)
492 1nn5_A Similar to deoxythymidy 91.8 0.063 2.2E-06 46.7 2.0 23 217-239 9-31 (215)
493 2bbs_A Cystic fibrosis transme 91.7 0.061 2.1E-06 50.3 1.9 22 219-240 66-87 (290)
494 2jeo_A Uridine-cytidine kinase 91.7 0.07 2.4E-06 48.1 2.2 24 217-240 25-48 (245)
495 1kht_A Adenylate kinase; phosp 91.7 0.064 2.2E-06 45.7 1.9 22 218-239 4-25 (192)
496 3jvv_A Twitching mobility prot 91.7 0.055 1.9E-06 52.2 1.6 21 219-239 125-145 (356)
497 2plr_A DTMP kinase, probable t 91.7 0.069 2.4E-06 46.3 2.1 23 218-240 5-27 (213)
498 1lw7_A Transcriptional regulat 91.6 0.047 1.6E-06 52.5 1.1 24 218-241 171-194 (365)
499 2wwf_A Thymidilate kinase, put 91.6 0.069 2.4E-06 46.4 2.1 23 217-239 10-32 (212)
500 2ewv_A Twitching motility prot 91.6 0.059 2E-06 52.2 1.7 21 219-239 138-158 (372)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=4.7e-55 Score=415.79 Aligned_cols=273 Identities=35% Similarity=0.624 Sum_probs=226.9
Q ss_pred cccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceE
Q 017132 100 VQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKV 179 (376)
Q Consensus 100 ~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~v 179 (376)
+|||||||.++.+++.+.++++|+|++|+|+|+|.++.++.+++++.++|+++|+||+||++.+..+.|.+++.+.|..+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~ 82 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRS 82 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCE
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcE
Confidence 89999999999999999999999999999999999999999999999999999999999999888889999998778889
Q ss_pred EEeeCcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEE
Q 017132 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR 259 (376)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~ 259 (376)
+++|+.++.|+.+|.+.+.++........+.++....+++|++||+||||||||||+|++++.+.+++.||+|++.+++.
T Consensus 83 i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~ 162 (282)
T 1puj_A 83 LSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK 162 (282)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE
T ss_pred EEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE
Confidence 99999999999999888777655433222334444567899999999999999999999988889999999999999888
Q ss_pred eCCeEEEEeCCCCcCCCCCcHHHHHHHHHhccccccccChhHHHHHHHHHHHcCCCcCHHHHHHHcCCCCCCCcHHHHHH
Q 017132 260 FGKDLEFLDSPGIIPMRISDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339 (376)
Q Consensus 260 ~~~~i~l~DTpG~i~~~~~~~~~~~kla~~~~i~~~~~~~~~v~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~ 339 (376)
++..+.++|||||+.+...+.+.++++++++++.+..++.++++.++++.+++. +++.|..+|+++....+..+|++
T Consensus 163 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~---~~~~l~~~y~~~~~~~~~~~~l~ 239 (282)
T 1puj_A 163 VGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEH---YPERLKERYGLDEIPEDIAELFD 239 (282)
T ss_dssp ETTTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHH---CHHHHHHHTTCSSCCSSHHHHHH
T ss_pred eCCCEEEEECcCcCCCCCCCHHHHHHHHHhCCcchhhCCHHHHHHHHHHHHHHh---ChHHHHHHcCCCCCCCCHHHHHH
Confidence 888999999999999888888888999999999988999999999999999876 67889999999743346889999
Q ss_pred HHHhHh----CCC--cHHHHHHHHHHHHhcCCCCceeccCCC
Q 017132 340 KLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLERPP 375 (376)
Q Consensus 340 ~~a~~~----~~g--D~~~aa~~iL~d~~~Gklg~~~ld~pp 375 (376)
.+|+++ ++| |+++||+.||+|||+||||+||||.|+
T Consensus 240 ~~a~~~g~~~kgg~~d~~~aa~~~l~d~~~Gklg~~~l~~~~ 281 (282)
T 1puj_A 240 AIGEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQPT 281 (282)
T ss_dssp HHHHHHTCBCSTTCBCHHHHHHHHHHHHHTTTTCSCCSCCCC
T ss_pred HHHHHhCCcccCCcccHHHHHHHHHHHHHcCCCCceECCCCC
Confidence 999874 455 999999999999999999999999986
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=100.00 E-value=1.5e-47 Score=360.44 Aligned_cols=241 Identities=32% Similarity=0.551 Sum_probs=191.6
Q ss_pred ccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEE
Q 017132 101 QWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVI 180 (376)
Q Consensus 101 qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi 180 (376)
|||||||.++.+++.+.++++|+|++|+|+|+|.++.++.++ ++ ++|+++|+||+||++++..+.|.+++++.|..+
T Consensus 2 ~w~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v- 78 (262)
T 3cnl_A 2 SWYPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV- 78 (262)
T ss_dssp -------CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-
T ss_pred CCCchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-
Confidence 899999999999999999999999999999999999988877 77 999999999999999888889999998888888
Q ss_pred EeeCcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe
Q 017132 181 FSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF 260 (376)
Q Consensus 181 ~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~ 260 (376)
++|+.++.|+.+|.+.++... .++++||+||||||||+|+|++...+.+++.||+|++.+++.+
T Consensus 79 ~iSa~~~~gi~~L~~~l~~~~----------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~ 142 (262)
T 3cnl_A 79 ITTHKGEPRKVLLKKLSFDRL----------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL 142 (262)
T ss_dssp EECCTTSCHHHHHHHHCCCTT----------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC
T ss_pred EEECCCCcCHHHHHHHHHHhh----------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe
Confidence 999999999887765543221 4799999999999999999999887789999999999998888
Q ss_pred CCeEEEEeCCCCcCCCC-CcHHHHHHHHHhccccccccChhHHHHHHHHHHHcCCCcCHHHHHHHcCCCCCCCcHHHHHH
Q 017132 261 GKDLEFLDSPGIIPMRI-SDQAAAIKLAICDDIGERSYDVADVAAILVQMLARIPTVGITALQNRYKIDMDGTCGKTFVQ 339 (376)
Q Consensus 261 ~~~i~l~DTpG~i~~~~-~~~~~~~kla~~~~i~~~~~~~~~v~~~ll~~l~~~~~~~~~~l~~~y~i~~~~~~~~~~l~ 339 (376)
+.++.++||||+..+.. .+.+.+ .+..++.++++.++++.++++ +++.+..+|+++. .+ .+|++
T Consensus 143 ~~~~~l~DtpG~~~~~~~~~~~~~---------~~~~~d~~~~~~~~~~~l~~~---~~~~l~~~y~i~~--~d-~~~l~ 207 (262)
T 3cnl_A 143 ENGVKILDTPGILYKNIFSEDLAA---------KLLLVGSLPVERIEDQRIFER---AFEIFARSIGIES--SF-SEFFE 207 (262)
T ss_dssp TTSCEEESSCEECCCCCCSHHHHH---------HHHHTTSSCGGGCCCHHHHHH---HHHHHHHHHTCCC--CH-HHHHH
T ss_pred CCCEEEEECCCcccCcCCCChhhc---------ccccCCHHHHHHHHHHHHHHh---CHHHHHHHcCcCC--Cc-HHHHH
Confidence 88999999999998877 665554 223445667777777777664 5678899999974 23 79999
Q ss_pred HHHhHh----CCC--cHHHHHHHHHHHHhcCCCCceeccCCC
Q 017132 340 KLALHL----FNG--DTHQAAFRILTDFRKGKFGWISLERPP 375 (376)
Q Consensus 340 ~~a~~~----~~g--D~~~aa~~iL~d~~~Gklg~~~ld~pp 375 (376)
.+|++. ++| |+++||+.||+||++|+||+|+||.|+
T Consensus 208 ~ia~~~g~~~kgg~~d~~~aa~~~l~d~~~g~l~~~~l~~~~ 249 (262)
T 3cnl_A 208 DFARKRGLLKKGGVPDIERALMLFFTEVAQGKAGRVSFERPE 249 (262)
T ss_dssp HHHHHTTCBCGGGCBCHHHHHHHHHHHHHTTTTCSCCSCCTT
T ss_pred HHHHHhCCccCCCcccHHHHHHHHHHHHHcCCCCceECCCCc
Confidence 999874 345 999999999999999999999999875
No 3
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=100.00 E-value=8.2e-36 Score=292.87 Aligned_cols=215 Identities=18% Similarity=0.098 Sum_probs=141.8
Q ss_pred cccchhhHHhhcCCee--eEEeecCCCCCCCccccchhhhcccccCCcEEEEcCCCCCcccChhHHHHHHHHHH--HHhh
Q 017132 44 SLSSSAPIIQTVGGKQ--SSWHGGNSNNSNGSIEAYEEECDWADLDADLYYWTKSLRPVQWYPGHIAKTEKELK--DQLK 119 (376)
Q Consensus 44 ~~~~~~~~~~~~g~~v--~~~~~~~~~~~~~~ig~gk~e~~~~~~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~--~vid 119 (376)
+|.|+..||+|||++| .++|+| +|||+||+|+||+||+.++.++|+||||++|+|.| .+|+++.+. +++|
T Consensus 12 ~~~e~~~l~~~~~~~~~~~~~~~~-~~~~~~~~g~gk~~e~~~~~~~~~v~~~~~l~p~q-----~~~l~~~~~~~~v~d 85 (364)
T 2qtf_A 12 FEEEAIALVEGANYKVTSIYKLPK-SPNVKFYIQYDKLQQIKNDEEISTLIIFEQLKPRH-----FINIRRELKGKEVLD 85 (364)
T ss_dssp THHHHHHHHHHTTEEEEEEECCCS-SCBTTTBSCHHHHHHHHTCTTCCEEEESSCCCHHH-----HHHHHHHHTTCEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEEEEcc-CCCCcceechhHHHHHhhccCCCEEEECCCCCHHH-----HHHHHHHhCCCceee
Confidence 8999999999999999 888988 99999999999999977799999999999999999 999999998 7999
Q ss_pred hcCeEEEEEecCCCCCC-C-cHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcchh------
Q 017132 120 LMDVVIEVRDARIPLST-T-HPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTM------ 191 (376)
Q Consensus 120 r~dlILeV~DaR~p~~~-~-~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi~------ 191 (376)
++|+||+|||+|++..+ . +++++++.+.+|++ ..|..+++..+ .+- ..|.|..
T Consensus 86 r~~lil~i~~~ra~t~~~~~q~~la~l~~~~~rl--------------~~~~~l~~~~~-~i~----~~g~ge~~~e~~~ 146 (364)
T 2qtf_A 86 KILLLLEIFALHAGSKEAKMQIELARLKYELPII--------------KETYTKSKIGE-QQG----PLGAGTYGVESTI 146 (364)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH--------------HHC--------------------------CHH
T ss_pred hHhHHHHHHHhhCcccchhHHHHHHHHhhhchhh--------------hhhhHHHHhcC-CCC----cCCcCHHHHHHHH
Confidence 99999999999999877 4 67777777655543 35655444332 111 1122222
Q ss_pred -hhhHHHHHhhhh-------hhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEe-
Q 017132 192 -KLSRLAKALASD-------VNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF- 260 (376)
Q Consensus 192 -~L~~~l~~l~~~-------~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~- 260 (376)
.+.+.+..+... +...+..+.. .....|++||+||||||||+|+|++.. ..+++.+|+|+|.. .+.+
T Consensus 147 ~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~-~~~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~ 224 (364)
T 2qtf_A 147 KFYKRRINKLMKELESIKIFKEKSIESNKR-NNIPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPIN 224 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------------CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEEC
Confidence 122222222221 1111211211 122349999999999999999999865 57889999999864 3444
Q ss_pred CCeEEEEeCCCCcCCCCCcHHHHHH
Q 017132 261 GKDLEFLDSPGIIPMRISDQAAAIK 285 (376)
Q Consensus 261 ~~~i~l~DTpG~i~~~~~~~~~~~k 285 (376)
+..+.++||||++...+++..++++
T Consensus 225 g~~v~l~DT~G~i~~lp~~lve~f~ 249 (364)
T 2qtf_A 225 NRKIMLVDTVGFIRGIPPQIVDAFF 249 (364)
T ss_dssp TEEEEEEECCCBCSSCCGGGHHHHH
T ss_pred CEEEEEEeCCCchhcCCHHHHHHHH
Confidence 4578999999999876666655554
No 4
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.91 E-value=7.3e-24 Score=208.35 Aligned_cols=154 Identities=21% Similarity=0.279 Sum_probs=129.5
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCH----HhHHHHHHH-HHHhCc---eE
Q 017132 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM----ADRNAWATY-FAKQGT---KV 179 (376)
Q Consensus 108 ~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~----~~~~~w~~~-~~~~g~---~v 179 (376)
..+.+.+.++.+++++|++|+|++++.++..+++.+++.++|+++|+||+||++. +....|... +++.|. .+
T Consensus 59 e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v 138 (369)
T 3ec1_A 59 DDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDV 138 (369)
T ss_dssp CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEE
T ss_pred HHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccE
Confidence 4455666677799999999999999999888899999889999999999999875 345567654 455565 68
Q ss_pred EEeeCcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhc-----ccccccCCCCceeE
Q 017132 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVTRV 254 (376)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~-----~~~~v~~~pg~T~~ 254 (376)
+++|+++|.|+.+|.+.+.++.. ..+|++||+||||||||+|+|++. ..+.+++.||||++
T Consensus 139 ~~iSA~~g~gi~~L~~~I~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~ 204 (369)
T 3ec1_A 139 CLVSAAKGIGMAKVMEAINRYRE--------------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD 204 (369)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHT--------------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE
T ss_pred EEEECCCCCCHHHHHHHHHhhcc--------------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe
Confidence 89999999999999887765531 125999999999999999999987 56789999999999
Q ss_pred EEEEEeCCeEEEEeCCCCcCC
Q 017132 255 LKWVRFGKDLEFLDSPGIIPM 275 (376)
Q Consensus 255 ~~~~~~~~~i~l~DTpG~i~~ 275 (376)
...+.++.++.++|||||..+
T Consensus 205 ~~~~~~~~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 205 MIEIPLESGATLYDTPGIINH 225 (369)
T ss_dssp EEEEECSTTCEEEECCSCCCC
T ss_pred eEEEEeCCCeEEEeCCCcCcH
Confidence 998888888999999999864
No 5
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.89 E-value=2.1e-23 Score=205.03 Aligned_cols=154 Identities=26% Similarity=0.363 Sum_probs=122.0
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH----hHHHHHHH-HHHhCc---eE
Q 017132 108 AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA----DRNAWATY-FAKQGT---KV 179 (376)
Q Consensus 108 ~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~----~~~~w~~~-~~~~g~---~v 179 (376)
..+.+.+.++.+.+|+|+.|+|++++..+...++.+++.++|+++|+||+||.+.. ....|... +++.|. .+
T Consensus 57 e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v 136 (368)
T 3h2y_A 57 DDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV 136 (368)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence 34455555677788899999999998877788888888899999999999998754 45667554 345565 78
Q ss_pred EEeeCcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcc------cccccCCCCcee
Q 017132 180 IFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRR------MCPAAPRPGVTR 253 (376)
Q Consensus 180 i~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~------~~~v~~~pg~T~ 253 (376)
+++|+++|.|+.+|.+.+.++.. ..+|+++|+||||||||+|+|++.. ...+++.||||+
T Consensus 137 ~~iSA~~g~gi~~L~~~l~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~ 202 (368)
T 3h2y_A 137 FLISAAKGQGIAELADAIEYYRG--------------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTL 202 (368)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT--------------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----
T ss_pred EEEeCCCCcCHHHHHhhhhhhcc--------------cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeec
Confidence 89999999999998887765431 1359999999999999999999853 455899999999
Q ss_pred EEEEEEeCCeEEEEeCCCCcCC
Q 017132 254 VLKWVRFGKDLEFLDSPGIIPM 275 (376)
Q Consensus 254 ~~~~~~~~~~i~l~DTpG~i~~ 275 (376)
+...+.++..+.++|||||..+
T Consensus 203 ~~~~~~~~~~~~liDtPG~~~~ 224 (368)
T 3h2y_A 203 DLIDIPLDEESSLYDTPGIINH 224 (368)
T ss_dssp CEEEEESSSSCEEEECCCBCCT
T ss_pred ceEEEEecCCeEEEeCCCcCcH
Confidence 9999888888999999999865
No 6
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.81 E-value=7e-20 Score=183.85 Aligned_cols=164 Identities=23% Similarity=0.330 Sum_probs=114.3
Q ss_pred HHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHHHhCc-eEEEeeCc
Q 017132 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQ 185 (376)
Q Consensus 109 ~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~-~vi~iSa~ 185 (376)
...++....++.+|+||+|+|++.+.+..+..+..++. ++|+++|+||+|+........+.+ +.+.|. .++++||+
T Consensus 70 ~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~-~~~lg~~~~~~iSA~ 148 (439)
T 1mky_A 70 KMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPE-LYSLGFGEPIPVSAE 148 (439)
T ss_dssp HHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHH-HGGGSSCSCEECBTT
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHH-HHhcCCCCEEEEecc
Confidence 34555667899999999999999988777777777764 799999999999864312122223 335564 68899999
Q ss_pred CCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEe-CC
Q 017132 186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GK 262 (376)
Q Consensus 186 ~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~-~~ 262 (376)
+|.|+.+|.+.+.+..................++|++||.||||||||+|+|++.....+++.||+|++.. .+.+ +.
T Consensus 149 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 149 HNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp TTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred CCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 99999998777654433211000000012346899999999999999999999987778999999999864 2333 55
Q ss_pred eEEEEeCCCCc
Q 017132 263 DLEFLDSPGII 273 (376)
Q Consensus 263 ~i~l~DTpG~i 273 (376)
.+.++||||+.
T Consensus 229 ~~~l~Dt~G~~ 239 (439)
T 1mky_A 229 KYVFVDTAGLR 239 (439)
T ss_dssp EEEESSCSCC-
T ss_pred EEEEEECCCCc
Confidence 78899999985
No 7
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.79 E-value=4.4e-20 Score=185.21 Aligned_cols=159 Identities=19% Similarity=0.264 Sum_probs=109.1
Q ss_pred HHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHHHhC-ceEEEeeCc
Q 017132 109 KTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSNGQ 185 (376)
Q Consensus 109 ~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g-~~vi~iSa~ 185 (376)
....+....++.+|+|++|+|++.+.+..+.++.+++. ++|+++|+||+|+.+... ...+ +.+.| ..++++||+
T Consensus 71 ~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--~~~~-~~~lg~~~~~~iSA~ 147 (436)
T 2hjg_A 71 QIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYD-FYSLGFGEPYPISGT 147 (436)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------CCCS-SGGGSSCCCEECBTT
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--hHHH-HHHcCCCCeEEEeCc
Confidence 44455567789999999999999988877777777664 789999999999976431 1111 22445 378899999
Q ss_pred CCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-CC
Q 017132 186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK 262 (376)
Q Consensus 186 ~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-~~ 262 (376)
+|.|+.+|.+.+.+...... ........++|++||.||||||||+|+|++.....+++.+|+|++... +.. +.
T Consensus 148 ~g~gv~~L~~~i~~~l~~~~----~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~ 223 (436)
T 2hjg_A 148 HGLGLGDLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ 223 (436)
T ss_dssp TTBTHHHHHHHHHHTGGGCC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE
T ss_pred CCCChHHHHHHHHHhcCccc----cccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe
Confidence 99999998877665443211 001123468999999999999999999999887779999999999632 223 55
Q ss_pred eEEEEeCCCCcC
Q 017132 263 DLEFLDSPGIIP 274 (376)
Q Consensus 263 ~i~l~DTpG~i~ 274 (376)
.+.|+||||+..
T Consensus 224 ~~~l~DT~G~~~ 235 (436)
T 2hjg_A 224 EFVIVDTAGMRK 235 (436)
T ss_dssp EEEETTHHHHTC
T ss_pred EEEEEECCCcCc
Confidence 799999999964
No 8
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.78 E-value=6.9e-20 Score=175.24 Aligned_cols=140 Identities=21% Similarity=0.253 Sum_probs=107.0
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHh----HHHHHHHHHHhCceEEEeeCcCC
Q 017132 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLG 187 (376)
Q Consensus 117 vidr~dlILeV~DaR~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~----~~~w~~~~~~~g~~vi~iSa~~g 187 (376)
.+.++|+|++|+|++.|..+.+ .+++++ .++|.++|+||+||+++.+ .+.|.++|++.|..++++|+.++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~ 161 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ 161 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 6899999999999999998887 788776 4789999999999998754 68899999888999999999999
Q ss_pred cchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCC-------CceeEEEEEEe
Q 017132 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-------GVTRVLKWVRF 260 (376)
Q Consensus 188 ~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p-------g~T~~~~~~~~ 260 (376)
.|+++|.+..+ .-.++|+|.+|||||||||+|.+.....++... ++|++.++++.
T Consensus 162 ~g~~~L~~~~~------------------G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~ 223 (307)
T 1t9h_A 162 DSLADIIPHFQ------------------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT 223 (307)
T ss_dssp TTCTTTGGGGT------------------TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE
T ss_pred CCHHHHHhhcC------------------CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhc
Confidence 88877654321 125899999999999999999986655566555 47776666665
Q ss_pred CCeEEEEeCCCCcCCC
Q 017132 261 GKDLEFLDSPGIIPMR 276 (376)
Q Consensus 261 ~~~i~l~DTpG~i~~~ 276 (376)
. ..+++||||+....
T Consensus 224 ~-~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 224 S-GGLVADTPGFSSLE 238 (307)
T ss_dssp T-TEEEESSCSCSSCC
T ss_pred C-CEEEecCCCccccc
Confidence 5 56899999998643
No 9
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.75 E-value=1.1e-18 Score=175.97 Aligned_cols=162 Identities=19% Similarity=0.267 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHHHhC-ceEEEee
Q 017132 107 IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQG-TKVIFSN 183 (376)
Q Consensus 107 ~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g-~~vi~iS 183 (376)
+....+.....++.+|+||+|+|++.+....+.++.+++. ++|+++|+||+|+..... .+.++ ...| ..++++|
T Consensus 89 ~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~--~~~e~-~~lg~~~~~~iS 165 (456)
T 4dcu_A 89 LAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--NIYDF-YSLGFGEPYPIS 165 (456)
T ss_dssp HHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------CCS-GGGSSSSEEECC
T ss_pred HHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhh--hHHHH-HHcCCCceEEee
Confidence 3555666667899999999999999988888888887775 789999999999875431 22222 2334 4678999
Q ss_pred CcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEe-
Q 017132 184 GQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF- 260 (376)
Q Consensus 184 a~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~- 260 (376)
+.+|.|+.+|.+.+.+...... .........+|+++|.||||||||+|+|++.....+++.||+|++.. .+..
T Consensus 166 A~~g~gv~~L~~~i~~~l~~~~----~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~ 241 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAEHFKNIP----ETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN 241 (456)
T ss_dssp TTTCTTHHHHHHHHHTTGGGSC----SSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEET
T ss_pred cccccchHHHHHHHHhhccccc----ccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEEC
Confidence 9999999998777655433211 01112346789999999999999999999887788999999999952 3333
Q ss_pred CCeEEEEeCCCCcCC
Q 017132 261 GKDLEFLDSPGIIPM 275 (376)
Q Consensus 261 ~~~i~l~DTpG~i~~ 275 (376)
+..+.|+||||+...
T Consensus 242 ~~~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 242 QQEFVIVDTAGMRKK 256 (456)
T ss_dssp TEEEEETTGGGTTTB
T ss_pred CceEEEEECCCCCcC
Confidence 557999999999753
No 10
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.72 E-value=1.2e-17 Score=162.81 Aligned_cols=141 Identities=23% Similarity=0.315 Sum_probs=107.9
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHh---HHHHHHHHHHhCceEEEeeCcC
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQL 186 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~---~~~w~~~~~~~g~~vi~iSa~~ 186 (376)
+.++.++|+|+. +|++.|..+.+ .+++++ .+++.++|+||+||++++. ...|..+|...|+.++++|+.+
T Consensus 125 ~~i~anvD~v~i-v~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 125 KPIAANIDQIVI-VSAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEEEECCCEEEE-EEESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHHHhcCCEEEE-EEeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 345799999995 57888877766 577775 4788899999999998765 6679999998999999999999
Q ss_pred CcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhccc-ccccCCC---C----ceeEEEEE
Q 017132 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRP---G----VTRVLKWV 258 (376)
Q Consensus 187 g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~p---g----~T~~~~~~ 258 (376)
+.|+..|...+ . .-.++|+|.+|||||||||+|++... ..++... | +|+..+..
T Consensus 203 ~~gl~~L~~~~-------------~-----G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~ 264 (358)
T 2rcn_A 203 QDGLKPLEEAL-------------T-----GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLY 264 (358)
T ss_dssp TBTHHHHHHHH-------------T-----TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEE
T ss_pred CcCHHHHHHhc-------------C-----CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEE
Confidence 99987775432 0 12489999999999999999998765 5555443 3 56666666
Q ss_pred EeCCeEEEEeCCCCcCC
Q 017132 259 RFGKDLEFLDSPGIIPM 275 (376)
Q Consensus 259 ~~~~~i~l~DTpG~i~~ 275 (376)
.+..+..++||||+...
T Consensus 265 ~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 265 HFPHGGDVIDSPGVREF 281 (358)
T ss_dssp ECTTSCEEEECHHHHTC
T ss_pred EECCCCEecCcccHHHh
Confidence 67666788999999754
No 11
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.71 E-value=3.9e-17 Score=156.11 Aligned_cols=138 Identities=23% Similarity=0.356 Sum_probs=106.5
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHh---HHHHHHHHHHhCceEEEeeCcCCc
Q 017132 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLGM 188 (376)
Q Consensus 117 vidr~dlILeV~DaR~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~---~~~w~~~~~~~g~~vi~iSa~~g~ 188 (376)
.+..+|+++.|+|++.|..+.+ .+++++ .+.|.++|+||+||.++.+ ...|.+++.+.|..++++|+++|.
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~ 154 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGE 154 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5899999999999998864443 344544 4789999999999998752 567877777778899999999999
Q ss_pred chhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCC-------ceeEEEEEEeC
Q 017132 189 GTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRFG 261 (376)
Q Consensus 189 gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-------~T~~~~~~~~~ 261 (376)
|+++|.+.+. ...++++|.+|||||||+|+|. .....++.... +|+.....+..
T Consensus 155 gi~~L~~~l~------------------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~ 215 (302)
T 2yv5_A 155 GIDELVDYLE------------------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFG 215 (302)
T ss_dssp THHHHHHHTT------------------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEET
T ss_pred CHHHHHhhcc------------------CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcC
Confidence 9888765431 1248999999999999999999 66566666554 66666665554
Q ss_pred CeEEEEeCCCCcC
Q 017132 262 KDLEFLDSPGIIP 274 (376)
Q Consensus 262 ~~i~l~DTpG~i~ 274 (376)
..-+++||||+..
T Consensus 216 ~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 216 KGSFVGDTPGFSK 228 (302)
T ss_dssp TTEEEESSCCCSS
T ss_pred CCcEEEECcCcCc
Confidence 4568999999963
No 12
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.63 E-value=8.8e-16 Score=146.59 Aligned_cols=142 Identities=22% Similarity=0.357 Sum_probs=101.7
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHh---HHHHHHHHHHhCceEEEeeCcCC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMAD---RNAWATYFAKQGTKVIFSNGQLG 187 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~---~~~w~~~~~~~g~~vi~iSa~~g 187 (376)
..+..+|.++.|+|+++|..+.+ .+.+|+ .+.|.++|+||+||.+... ...|.+.+... ..++.+||++|
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~~-~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~-~~~~~~SAktg 157 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL-YPIVKTSAKTG 157 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT-SCEEECCTTTC
T ss_pred cccccCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh-CcEEEEECCCC
Confidence 36899999999999998864432 344443 3689999999999998654 45566655433 78899999999
Q ss_pred cchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCC-------ceeEEEEEEe
Q 017132 188 MGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-------VTRVLKWVRF 260 (376)
Q Consensus 188 ~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-------~T~~~~~~~~ 260 (376)
.|+.++.+.+. .-.++++|.+|+|||||+|+|.+.....++.... +|+..+.+++
T Consensus 158 ~gv~~lf~~l~------------------geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~ 219 (301)
T 1u0l_A 158 MGIEELKEYLK------------------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKF 219 (301)
T ss_dssp TTHHHHHHHHS------------------SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEEC
T ss_pred cCHHHHHHHhc------------------CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEc
Confidence 99888765431 1148999999999999999999866555555443 5655555555
Q ss_pred CCeEEEEeCCCCcCCCC
Q 017132 261 GKDLEFLDSPGIIPMRI 277 (376)
Q Consensus 261 ~~~i~l~DTpG~i~~~~ 277 (376)
....+++||||+....+
T Consensus 220 ~~~g~v~q~p~~~~~~~ 236 (301)
T 1u0l_A 220 DFGGYVVDTPGFANLEI 236 (301)
T ss_dssp TTSCEEESSCSSTTCCC
T ss_pred CCCCEEEECcCCCccCC
Confidence 44568999999976543
No 13
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.59 E-value=5.5e-17 Score=158.45 Aligned_cols=156 Identities=19% Similarity=0.146 Sum_probs=109.0
Q ss_pred CeEEEEEecCCCCCCCcHHHHHHh----cCCCeEEEEEccCCCCHHhHHHHHHHHHH-h-CceEEEeeCcCCcchhhhhH
Q 017132 122 DVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMADRNAWATYFAK-Q-GTKVIFSNGQLGMGTMKLSR 195 (376)
Q Consensus 122 dlILeV~DaR~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~w~~~~~~-~-g~~vi~iSa~~g~gi~~L~~ 195 (376)
|.+-.|++++.+..+.++.++++. ..+++++++||+|++++...+.|.+|++. . +.....++...+.+..++.+
T Consensus 59 ~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (357)
T 2e87_A 59 DNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVAS 138 (357)
T ss_dssp HHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 455567788888888888888776 67888899999999999999999999876 3 43222222233333444444
Q ss_pred HHHHhhhh-------hhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEE
Q 017132 196 LAKALASD-------VNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLE 265 (376)
Q Consensus 196 ~l~~l~~~-------~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~ 265 (376)
.++++... +...++.+.......+|+++|+||||||||+|+|++.. ..+++.||+|++.+...+ +..+.
T Consensus 139 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~ 217 (357)
T 2e87_A 139 VLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQ 217 (357)
T ss_dssp HHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEE
Confidence 33332221 12222222222456789999999999999999999865 678889999999876554 34589
Q ss_pred EEeCCCCcCCCCC
Q 017132 266 FLDSPGIIPMRIS 278 (376)
Q Consensus 266 l~DTpG~i~~~~~ 278 (376)
++||||+......
T Consensus 218 l~Dt~G~~~~~~~ 230 (357)
T 2e87_A 218 IIDTPGLLDRPIS 230 (357)
T ss_dssp EEECTTTSSSCST
T ss_pred EEeCCCccccchh
Confidence 9999999875443
No 14
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.48 E-value=2.1e-14 Score=140.82 Aligned_cols=59 Identities=37% Similarity=0.576 Sum_probs=50.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-CCeEEEEeCCCCcCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIPM 275 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-~~~i~l~DTpG~i~~ 275 (376)
...+|+|||+||||||||||+|++.+ +.+++.||||+++.. +.. +..+.++||||++..
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~ 132 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDG 132 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCC
Confidence 34689999999999999999999875 789999999999753 333 568999999999965
No 15
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.11 E-value=1.8e-11 Score=123.94 Aligned_cols=57 Identities=39% Similarity=0.566 Sum_probs=49.4
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEe-CCeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~-~~~i~l~DTpG~i 273 (376)
.++|+|||+||||||||+|+|++.+...+++.||||+|.. .+.+ +..+.++||||+.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~ 302 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVR 302 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCC
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCcc
Confidence 4789999999999999999999987778999999999963 3344 4578999999997
No 16
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.09 E-value=3.6e-11 Score=121.52 Aligned_cols=59 Identities=31% Similarity=0.400 Sum_probs=29.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-CCeEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-~~~i~l~DTpG~i~ 274 (376)
..++|+++|+||||||||+|+|++.+...+++.||+|++... +.+ +..+.++||||+..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~ 293 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLRE 293 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCc
Confidence 357899999999999999999998877789999999999743 333 45789999999964
No 17
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.03 E-value=6.7e-11 Score=118.38 Aligned_cols=56 Identities=38% Similarity=0.574 Sum_probs=35.4
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEE--Ee-CCeEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~--~~-~~~i~l~DTpG~i~ 274 (376)
+|+|||.||||||||+|+|++.+.+.+++.||+|+|.... .. +..+.++||||+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccc
Confidence 6999999999999999999988767789999999995433 33 56789999999974
No 18
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.00 E-value=2.2e-10 Score=109.17 Aligned_cols=58 Identities=40% Similarity=0.599 Sum_probs=47.9
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEE--Ee-CCeEEEEeCCCCcCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKDLEFLDSPGIIPM 275 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~--~~-~~~i~l~DTpG~i~~ 275 (376)
.+|++||.||||||||+|+|++.+...+++.|+||++.... .. +.++.++||||+..+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccch
Confidence 46999999999999999999998877789999999984321 12 447899999999754
No 19
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.99 E-value=2.2e-10 Score=105.82 Aligned_cols=60 Identities=27% Similarity=0.247 Sum_probs=42.0
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCC-CceeEEEEEEe---CCeEEEEeCCCCcCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p-g~T~~~~~~~~---~~~i~l~DTpG~i~~ 275 (376)
..++|++||.||||||||+|+|++.+...++..+ ++|++.+.... +..+.++||||+...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSST
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCC
Confidence 4578999999999999999999987755444433 58877543332 557999999999753
No 20
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.98 E-value=3.7e-10 Score=105.98 Aligned_cols=58 Identities=31% Similarity=0.513 Sum_probs=49.1
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~~ 275 (376)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.++||||+...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~ 63 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSL 63 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCcc
Confidence 3689999999999999999999876 689999999998654333 567999999999754
No 21
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.98 E-value=7e-11 Score=118.98 Aligned_cols=59 Identities=36% Similarity=0.510 Sum_probs=44.6
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEe-CCeEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~-~~~i~l~DTpG~i~ 274 (376)
..++|+++|+||||||||+|+|++.....+++.||+|++.. .+.+ +..+.++||||+..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~ 284 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRE 284 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCcccc
Confidence 35789999999999999999999887777999999999963 3333 55789999999954
No 22
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.95 E-value=7.4e-10 Score=103.00 Aligned_cols=57 Identities=32% Similarity=0.441 Sum_probs=47.8
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEE--e-CCeEEEEeCCCCcCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPMR 276 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~--~-~~~i~l~DTpG~i~~~ 276 (376)
+|+++|.||||||||+|+|++.. ..+++.||+|.+..... . +..+.++||||+....
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLV 62 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCccccc
Confidence 69999999999999999999875 78999999998865433 3 4578999999997654
No 23
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.94 E-value=5.5e-10 Score=97.89 Aligned_cols=61 Identities=33% Similarity=0.588 Sum_probs=43.1
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcc-cccccCCCCceeEEEEEEeCCeEEEEeCCCCcCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~i~~~ 276 (376)
..++|+++|.+|||||||+|+|++.. ...+++.+|+|++......+..+.++||||+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAK 83 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccc
Confidence 35789999999999999999999865 45678899999998888888899999999986543
No 24
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.94 E-value=5.1e-10 Score=106.82 Aligned_cols=60 Identities=38% Similarity=0.607 Sum_probs=49.5
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEE--Ee--CCeEEEEeCCCCcCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF--GKDLEFLDSPGIIPMR 276 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~--~~--~~~i~l~DTpG~i~~~ 276 (376)
+-.|+++|.||||||||+|+|++.+...+++.|++|++.... .. +..+.++||||+..+.
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~ 73 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPK 73 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccc
Confidence 346999999999999999999998877789999999985432 22 4478999999998654
No 25
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.94 E-value=6e-10 Score=96.62 Aligned_cols=58 Identities=33% Similarity=0.508 Sum_probs=47.5
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEe-CCeEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~-~~~i~l~DTpG~i~ 274 (376)
..+|++||.||||||||+|+|++.....+++.||+|++.. .+.+ +..+.++||||+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCccc
Confidence 4689999999999999999999876556788999998753 3444 34688999999964
No 26
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.93 E-value=2.4e-10 Score=114.24 Aligned_cols=57 Identities=37% Similarity=0.539 Sum_probs=34.3
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
++|++||.||||||||+|+|++.....+++.||+|+|.....+ +..+.++||||+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 63 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 63 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCC
Confidence 4699999999999999999998877779999999999776554 46799999999974
No 27
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.93 E-value=2e-09 Score=93.83 Aligned_cols=61 Identities=33% Similarity=0.494 Sum_probs=53.3
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeCCeEEEEeCCCCcCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPMR 276 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~i~~~ 276 (376)
..++|+++|.+|||||||+|+|++.....+++.+|+|.+......+..+.++||||+....
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~ 82 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAK 82 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCcccc
Confidence 3468999999999999999999988767788999999998887778899999999986543
No 28
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.93 E-value=4.7e-10 Score=100.72 Aligned_cols=59 Identities=27% Similarity=0.407 Sum_probs=51.0
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcc-cccccCCCCceeEEEEEEeC----CeEEEEeCCCCcCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIPM 275 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pg~T~~~~~~~~~----~~i~l~DTpG~i~~ 275 (376)
.++|+++|.+|||||||+|+|++.. ...+++.+|+|++.....+. ..+.|+||||+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~ 92 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYA 92 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcc
Confidence 4689999999999999999999876 45789999999998776664 67999999998654
No 29
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.89 E-value=1.4e-09 Score=99.41 Aligned_cols=62 Identities=24% Similarity=0.391 Sum_probs=42.1
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCC--CceeEEEEEE--e-CCeEEEEeCCCCcCCCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP--GVTRVLKWVR--F-GKDLEFLDSPGIIPMRIS 278 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p--g~T~~~~~~~--~-~~~i~l~DTpG~i~~~~~ 278 (376)
..++|+|+|.+|||||||+|+|++... ..+..+ ++|++..... . +..+.|+||||+......
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~ 94 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVP 94 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETTEEEEEEECCSCC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCC
Confidence 457899999999999999999998664 455555 7888765433 3 457999999999865443
No 30
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.88 E-value=1.9e-09 Score=100.22 Aligned_cols=60 Identities=23% Similarity=0.377 Sum_probs=49.1
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~~ 275 (376)
..++|+++|.+|||||||+|+|++.....+++.+++|.+.....+ +..+.|+||||+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~ 97 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCc
Confidence 357899999999999999999999876678899999987654333 457899999999754
No 31
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.88 E-value=2.2e-09 Score=100.20 Aligned_cols=60 Identities=27% Similarity=0.388 Sum_probs=49.8
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPM 275 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~~ 275 (376)
..++|+++|.+|||||||+|+|++.....+++.+++|.+.....+ +..+.++||||+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 100 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCC
Confidence 357899999999999999999998876678889999987654443 447999999999754
No 32
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.88 E-value=2.2e-09 Score=99.90 Aligned_cols=60 Identities=37% Similarity=0.527 Sum_probs=49.3
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRI 277 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~~~~ 277 (376)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.++||||+.....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~ 67 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGY 67 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCC
Confidence 4689999999999999999999865 568999999998654333 44789999999975443
No 33
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.87 E-value=6.3e-10 Score=108.44 Aligned_cols=57 Identities=40% Similarity=0.533 Sum_probs=41.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEeC------------------CeEEEEeCCCCcCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG------------------KDLEFLDSPGIIPM 275 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~~------------------~~i~l~DTpG~i~~ 275 (376)
.+|+|||.||||||||+|+|++.. +.+++.||+|.+... +.+. ..+.++||||++..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 579999999999999999999866 789999999998542 2222 36899999999853
No 34
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.87 E-value=5.6e-10 Score=110.35 Aligned_cols=56 Identities=27% Similarity=0.351 Sum_probs=29.9
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEE----E-------------------eC----CeEEEEeCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV----R-------------------FG----KDLEFLDSP 270 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~----~-------------------~~----~~i~l~DTp 270 (376)
++|+|||.||||||||+|+|++.+ +.+++.||+|++...- . ++ ..+.++|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 369999999999999999999876 7889999999985321 1 01 258899999
Q ss_pred CCcC
Q 017132 271 GIIP 274 (376)
Q Consensus 271 G~i~ 274 (376)
|+..
T Consensus 80 G~~~ 83 (397)
T 1wxq_A 80 GLVP 83 (397)
T ss_dssp ----
T ss_pred Cccc
Confidence 9974
No 35
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.86 E-value=2.3e-09 Score=100.62 Aligned_cols=58 Identities=38% Similarity=0.493 Sum_probs=48.6
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe--CCeEEEEeCCCCcCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIPM 275 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~--~~~i~l~DTpG~i~~ 275 (376)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.++||||....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSM 62 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCcc
Confidence 4679999999999999999999864 678999999998655444 457999999998754
No 36
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.86 E-value=1.2e-09 Score=109.74 Aligned_cols=57 Identities=37% Similarity=0.539 Sum_probs=37.9
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
++|+|||.||||||||+|+|++.....+++.||+|++.....+ +..+.++||||+..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~ 83 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI 83 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC---
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCC
Confidence 5799999999999999999999877779999999999876665 56799999999873
No 37
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.85 E-value=1.2e-09 Score=103.82 Aligned_cols=56 Identities=32% Similarity=0.456 Sum_probs=46.1
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-CCeEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-~~~i~l~DTpG~i 273 (376)
..|+|||.||||||||+|+|++.+...+++.|++|++... +.. +..+.++||||+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 4699999999999999999999876678899999987432 222 4468899999986
No 38
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.83 E-value=2e-09 Score=111.02 Aligned_cols=58 Identities=28% Similarity=0.397 Sum_probs=42.5
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCcee----EE-EEE-----EeCCeEEEEeCCCCcCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR----VL-KWV-----RFGKDLEFLDSPGIIPM 275 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~----~~-~~~-----~~~~~i~l~DTpG~i~~ 275 (376)
...+|+|||+||||||||||+|+|.... + +.+|+|+ .. .|. ..+..++|+|||||...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~-~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKG-F-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSC-S-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCc-c-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 3567999999999999999999987642 1 4555544 33 221 12567999999999864
No 39
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.82 E-value=2.9e-09 Score=104.85 Aligned_cols=61 Identities=30% Similarity=0.351 Sum_probs=49.7
Q ss_pred CCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeC------------------CeEEEEeCCCCcC
Q 017132 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG------------------KDLEFLDSPGIIP 274 (376)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~------------------~~i~l~DTpG~i~ 274 (376)
....+|+|||.||||||||||+|++...+.+++.||+|.++. .+.+. ..+.++||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 445789999999999999999999977558999999999853 33332 2579999999986
Q ss_pred C
Q 017132 275 M 275 (376)
Q Consensus 275 ~ 275 (376)
.
T Consensus 98 ~ 98 (392)
T 1ni3_A 98 G 98 (392)
T ss_dssp C
T ss_pred C
Confidence 4
No 40
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.82 E-value=4.9e-09 Score=97.88 Aligned_cols=60 Identities=33% Similarity=0.443 Sum_probs=49.2
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIPMRI 277 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~~~~ 277 (376)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.++||||+.....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR-QHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC-EEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence 3679999999999999999999875 488999999998654332 45689999999976443
No 41
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.82 E-value=3e-09 Score=99.50 Aligned_cols=58 Identities=28% Similarity=0.324 Sum_probs=38.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccC-------CCCceeEEEEEEe--CC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKWVRF--GK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-------~pg~T~~~~~~~~--~~---~i~l~DTpG~i 273 (376)
..++|++||.||||||||+|+|++.+...... .++++.+.....+ +. .+.++||||+-
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~ 76 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFG 76 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcc
Confidence 35789999999999999999999776433332 3444445444443 22 68999999994
No 42
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.81 E-value=1.8e-09 Score=106.35 Aligned_cols=60 Identities=32% Similarity=0.385 Sum_probs=34.2
Q ss_pred CCceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe------------------CCeEEEEeCCCCcC
Q 017132 215 PRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF------------------GKDLEFLDSPGIIP 274 (376)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~------------------~~~i~l~DTpG~i~ 274 (376)
....+|+|||.||||||||+|+|++.+ ..+++.||+|.++.. +.+ ...+.++||||+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~-~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQ-ASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC-ccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 345789999999999999999999865 488999999987532 222 23489999999986
Q ss_pred C
Q 017132 275 M 275 (376)
Q Consensus 275 ~ 275 (376)
.
T Consensus 99 ~ 99 (396)
T 2ohf_A 99 G 99 (396)
T ss_dssp -
T ss_pred c
Confidence 4
No 43
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.80 E-value=3e-09 Score=98.38 Aligned_cols=61 Identities=18% Similarity=0.351 Sum_probs=47.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCC-ceeEEEE--EEe-CCeEEEEeCCCCcCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG-VTRVLKW--VRF-GKDLEFLDSPGIIPMR 276 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg-~T~~~~~--~~~-~~~i~l~DTpG~i~~~ 276 (376)
..++|+|+|.||||||||+|+|++.....++..|+ +|++... ... +..+.|+||||+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~ 85 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWK 85 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCC
Confidence 35789999999999999999999876555666666 7777543 222 4579999999998653
No 44
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.78 E-value=1.8e-09 Score=104.95 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=21.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhh
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~ 239 (376)
....|+|+|+||||||||+|+|++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999986
No 45
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.78 E-value=3.7e-09 Score=91.93 Aligned_cols=55 Identities=35% Similarity=0.510 Sum_probs=47.6
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeCCeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~i~ 274 (376)
++|+++|.+|||||||+|+|++.. ..++..||+|.+...+... .+.++||||+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGF 56 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET-TEEEEECCCBSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC-CEEEEECCCccc
Confidence 479999999999999999999765 6778889999988777766 799999999854
No 46
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.77 E-value=6.8e-09 Score=88.98 Aligned_cols=57 Identities=32% Similarity=0.563 Sum_probs=40.9
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEe-CCeEEEEeCCCCcCC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRF-GKDLEFLDSPGIIPM 275 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~-~~~i~l~DTpG~i~~ 275 (376)
.+|+++|.+|||||||+|+|++.. ..+++.||+|.+.. .+.. +..+.++||||....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccC
Confidence 579999999999999999999754 45778899888743 2333 456899999998754
No 47
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.76 E-value=4e-09 Score=93.63 Aligned_cols=59 Identities=24% Similarity=0.443 Sum_probs=39.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcc-cccccCCCCceeEEEEEEeCCeEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRR-MCPAAPRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~-~~~v~~~pg~T~~~~~~~~~~~i~l~DTpG~i~ 274 (376)
...+|+++|.+|||||||+|+|++.. ...+.+.+|+|+....+.++..+.++||||+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~ 84 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGY 84 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcc
Confidence 34679999999999999999999865 455678899998766666655889999999864
No 48
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.74 E-value=1.6e-08 Score=87.81 Aligned_cols=58 Identities=31% Similarity=0.540 Sum_probs=47.2
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEE--e-CCeEEEEeCCCCcCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVR--F-GKDLEFLDSPGIIPM 275 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~--~-~~~i~l~DTpG~i~~ 275 (376)
..+|+++|.+|||||||+|+|++.. ..++..|++|.+..... . +..+.++||||....
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 4689999999999999999999754 56788899998865433 3 456899999998754
No 49
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.73 E-value=1.7e-09 Score=104.85 Aligned_cols=56 Identities=30% Similarity=0.456 Sum_probs=46.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEeC--CeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~~--~~i~l~DTpG~i~ 274 (376)
.+|+|||+||||||||||+|++.+ ..+++.||+|++... +.++ ..+.++||||++.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~ 218 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIE 218 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCcc
Confidence 369999999999999999999764 578999999998653 4443 5799999999974
No 50
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.72 E-value=4.8e-09 Score=88.53 Aligned_cols=57 Identities=47% Similarity=0.589 Sum_probs=38.1
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
++|+++|.+|||||||+|+|.+.....+++.+++|.+.....+ +..+.++||||...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 61 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWS 61 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCC
Confidence 4799999999999999999998765567888999988654433 45789999999975
No 51
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.72 E-value=2.7e-09 Score=100.32 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=28.3
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccc-----cccCCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG 250 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-----~v~~~pg 250 (376)
..++|++||.||||||||+|+|++.... .++..|+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~ 64 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 64 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence 3568999999999999999999987643 4455665
No 52
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.71 E-value=9.6e-09 Score=92.96 Aligned_cols=58 Identities=26% Similarity=0.366 Sum_probs=42.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
..++|+++|.+|||||||+|+|++.. ..+++.+++|++...... +..+.++||||+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN-VDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLD 88 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC-EEEECC-----CEEEEEEEETTEEEEEEECTTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCcceeeeeeeeecCCCeEEEEECCCCcC
Confidence 35789999999999999999999765 447788999998765432 34789999999964
No 53
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.71 E-value=1.3e-08 Score=86.97 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=41.1
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeCC---eEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i~ 274 (376)
.++|+++|.+|||||||+|+|++.....+.+.+|+|.....+.++. .+.++||||.-.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence 4789999999999999999999876556667788887666666643 578999999854
No 54
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.67 E-value=5.7e-09 Score=102.00 Aligned_cols=57 Identities=39% Similarity=0.509 Sum_probs=45.7
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEE----------------------eCCeEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVR----------------------FGKDLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~----------------------~~~~i~l~DTpG~i 273 (376)
++|++||.||||||||+|+|++.. +.+++.||+|.+.. ... .+..+.++||||++
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 369999999999999999999864 67899999998742 221 23468999999998
Q ss_pred CC
Q 017132 274 PM 275 (376)
Q Consensus 274 ~~ 275 (376)
..
T Consensus 81 ~~ 82 (368)
T 2dby_A 81 KG 82 (368)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 55
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.65 E-value=1.9e-08 Score=97.57 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=27.6
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccc-----cccCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----PAAPRPG 250 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-----~v~~~pg 250 (376)
.++|++||.||||||||+|+|++.+.. .++..|+
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~ 69 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 69 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence 468999999999999999999987643 3455566
No 56
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.64 E-value=2.5e-08 Score=94.57 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.6
Q ss_pred ceEEeEeecCCCCcchhhhhhhhccc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRM 242 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~ 242 (376)
.++|++||.||||||||+|+|++...
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 46799999999999999999998764
No 57
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.64 E-value=3.5e-08 Score=83.82 Aligned_cols=57 Identities=23% Similarity=0.405 Sum_probs=44.6
Q ss_pred ceEEeEeecCCCCcchhhhhhhhccc-ccccCCCCceeEEEEEEeC---CeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pg~T~~~~~~~~~---~~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|.+... ....+.+|+|......... ..+.++||||.-
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 66 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch
Confidence 47899999999999999999997652 2345667777776665554 357899999984
No 58
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.59 E-value=2.8e-08 Score=84.28 Aligned_cols=57 Identities=26% Similarity=0.148 Sum_probs=34.4
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeC--CeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG--KDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~--~~i~l~DTpG~i~ 274 (376)
++|+++|.+|||||||+|+|++.....+.+.+|+|.+.....-+ ..+.+.||||.-.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC----
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCcc
Confidence 57999999999999999999987766778888998864432222 2467999999753
No 59
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.55 E-value=4.5e-08 Score=100.60 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=33.3
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccc--cccCCCCceeE
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRV 254 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~--~v~~~pg~T~~ 254 (376)
..++|+|+|.+|||||||+|+|++.+.. .+++.|+||+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~ 104 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF 104 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE
Confidence 3568999999999999999999987644 58889988774
No 60
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.53 E-value=3.6e-08 Score=98.04 Aligned_cols=60 Identities=23% Similarity=0.314 Sum_probs=38.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CC-eEEEEeCCCCcCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GK-DLEFLDSPGIIPM 275 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~-~i~l~DTpG~i~~ 275 (376)
..++|+++|.+|||||||+|+|++.....+++.+|+|.+.....+ +. .+.++||||+...
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc
Confidence 347899999999999999999998776678899999998654333 33 7899999999753
No 61
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.51 E-value=1.2e-07 Score=80.23 Aligned_cols=57 Identities=23% Similarity=0.415 Sum_probs=41.4
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccc-cccCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|.+.... ...+..|.+.....+.++. .+.++||||.-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh
Confidence 368999999999999999999976522 2334455555555555543 58899999964
No 62
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.50 E-value=1.5e-07 Score=79.28 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=37.6
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++... ......++.+. ..+.++. .+.++||||.-
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 62 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 62 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--cccCCCCcceeEEEEEEECCEEEEEEEEECCCch
Confidence 46899999999999999999997542 22333333332 2333332 37899999964
No 63
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.50 E-value=3.1e-08 Score=85.01 Aligned_cols=57 Identities=26% Similarity=0.450 Sum_probs=43.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-~~~i~l~DTpG~i 273 (376)
...+|+++|.+|||||||+|+|++.. ......+++|.+... +.. +..+.++||||.-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 66 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK-VTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHE 66 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC-SSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc-cccCCCCceeEeeeEEEEEeCCceEEEEECCCCH
Confidence 45789999999999999999999754 455666777766432 233 4578899999974
No 64
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.50 E-value=8.6e-08 Score=84.01 Aligned_cols=57 Identities=25% Similarity=0.413 Sum_probs=45.3
Q ss_pred ceEEeEeecCCCCcchhhhhhhhccc-ccccCCCCceeEEEEEEeC---CeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pg~T~~~~~~~~~---~~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++... ....+.+|+|.....+.++ ..+.++||||.-
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 83 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch
Confidence 57899999999999999999997652 2466778888777666553 258899999964
No 65
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.50 E-value=6.4e-08 Score=92.11 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=46.3
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe----CCeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~----~~~i~l~DTpG~i 273 (376)
..+|+++|.||||||||+|+|++.....+++.+|+|.+.....+ +..+.++||||.-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 63 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcH
Confidence 46899999999999999999987655677889999998654432 2368899999974
No 66
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.49 E-value=1.2e-07 Score=100.06 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=32.6
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGV 251 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~ 251 (376)
..++|+|+|.||||||||+|+|+|.....+++.|+|
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 357899999999999999999999887788888888
No 67
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.48 E-value=1.2e-07 Score=80.63 Aligned_cols=56 Identities=23% Similarity=0.412 Sum_probs=39.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|.+.......+..|.+. ..+.. +..+.++||||.-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~ 62 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYKNLKFQVWDLGGLT 62 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEETTEEEEEEEECCCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEECCEEEEEEECCCCh
Confidence 35789999999999999999998765433333333322 22233 4578899999974
No 68
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.48 E-value=1.4e-07 Score=79.85 Aligned_cols=57 Identities=25% Similarity=0.347 Sum_probs=42.2
Q ss_pred ceEEeEeecCCCCcchhhhhhhhccccc-ccCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++..... ..+..|++.......++. .+.++||||.-
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 66 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 5789999999999999999999754322 334556666555555533 57899999964
No 69
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.48 E-value=6.6e-08 Score=84.40 Aligned_cols=56 Identities=23% Similarity=0.282 Sum_probs=36.6
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccc--cccCCCCceeEEEEEEeCCeEEEEeCCCCcCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVLKWVRFGKDLEFLDSPGIIPM 275 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~--~v~~~pg~T~~~~~~~~~~~i~l~DTpG~i~~ 275 (376)
..++|+++|.+|||||||+|+|++.... .++..|++|.+. .+..+.++||||.-..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~ 104 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKL 104 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCCBS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchH
Confidence 4578999999999999999999976421 123445555443 2457889999999643
No 70
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=1.6e-07 Score=80.59 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=41.8
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.........|.++.+... +.++. .+.++||||.-
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 357899999999999999999997664334445656555432 33433 57899999964
No 71
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.46 E-value=1.4e-07 Score=80.91 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=41.5
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.. ......|++|.+.. .+..+. .+.++||||.-
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNT-FSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCch
Confidence 35789999999999999999999754 34556677776654 334433 57899999964
No 72
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.45 E-value=1.6e-07 Score=84.09 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=45.9
Q ss_pred CceEEeEeecCCCCcchhhhhhh-hcccccccCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLL-KRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~-~~~~~~v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+++ +.......+.+|+|.......++. .+.++||||.-
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 75 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChH
Confidence 45789999999999999999954 443445678899998877666543 57899999964
No 73
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.44 E-value=2.4e-07 Score=79.32 Aligned_cols=57 Identities=21% Similarity=0.239 Sum_probs=38.7
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeE--EEEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~--~~~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.. ......|.++.+ ...+.++. .+.++||||.-
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNK-FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC-CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 35789999999999999999999754 233334444444 33444444 68899999953
No 74
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.44 E-value=2.6e-07 Score=79.03 Aligned_cols=58 Identities=21% Similarity=0.309 Sum_probs=41.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhccccc-ccCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++..... ..+..+.+.....+.++. .+.++||||.-
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 75 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCCh
Confidence 35789999999999999999999765321 223345555555555543 57899999964
No 75
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.43 E-value=1.2e-07 Score=82.36 Aligned_cols=56 Identities=27% Similarity=0.400 Sum_probs=42.1
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
...+|+++|.+|||||||+|+|++.....+.+..|.+... +.. +..+.+.||||.-
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~--~~~~~~~l~i~Dt~G~~ 71 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKS--VQSQGFKLNVWDIGGQR 71 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEE--EEETTEEEEEEECSSCG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEE--EEECCEEEEEEECCCCH
Confidence 3578999999999999999999986544456666755432 222 4568899999974
No 76
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.43 E-value=2.8e-07 Score=79.67 Aligned_cols=56 Identities=23% Similarity=0.211 Sum_probs=39.9
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEeCC---eEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~~~---~i~l~DTpG~i~ 274 (376)
.++|+++|.+|||||||+|+|++.. .....+++|.+... ..++. .+.++||||.-.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 64 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 64 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC--
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHH
Confidence 5789999999999999999999754 35556666655432 23332 266899999653
No 77
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.43 E-value=1.9e-07 Score=80.96 Aligned_cols=56 Identities=21% Similarity=0.352 Sum_probs=39.6
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.......+..|.+.. .+.. +..+.++||||.-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEHRGFKLNIWDVGGQK 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEETTEEEEEEEECCSH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceE--EEEECCEEEEEEECCCCH
Confidence 357899999999999999999997653233334443322 2233 4468999999973
No 78
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.42 E-value=2.6e-07 Score=97.76 Aligned_cols=57 Identities=19% Similarity=0.206 Sum_probs=35.7
Q ss_pred CcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhccc
Q 017132 184 GQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRM 242 (376)
Q Consensus 184 a~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~ 242 (376)
+..+.|+.++...+.++......... +..-..++|++||++|+|||||+|+|+|...
T Consensus 20 ~~~~~~~~~li~~inkl~d~l~~lg~--~~~i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 20 HMGNRGMEDLIPLVNRLQDAFSAIGQ--NADLDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp -----CGGGHHHHHHHHHHHHHTTTC--CGGGCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred ccccccHHHHHHHHHHHHHHHHhcCc--cccCCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 34456777777776666543222111 1112346899999999999999999998754
No 79
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.42 E-value=2.2e-07 Score=81.14 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=41.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccc-cCCCCceeEEEEEEeC---CeEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFG---KDLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pg~T~~~~~~~~~---~~i~l~DTpG~i~ 274 (376)
..++|+++|.+|||||||+|+|++...... .+..|++.....+.++ ..+.++||||.-.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 86 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER 86 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh
Confidence 457899999999999999999997653322 2233444444444443 3578999999854
No 80
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.41 E-value=1.8e-07 Score=81.09 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=42.6
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.......+..|.+... +.. +..+.++||||.-
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~ 76 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE--IVINNTRFLMWDIGGQE 76 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEE--EEETTEEEEEEEESSSG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEE--EEECCEEEEEEECCCCH
Confidence 3578999999999999999999987655566667765432 222 4578999999984
No 81
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.41 E-value=1.3e-07 Score=80.11 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=37.1
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i~ 274 (376)
.++|+++|.+|||||||+|+|++.. ......|.++.+.. .+.++. .+.++||||.-.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 64 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC-CCC-------CCEEEEEEESSSCEEEEEEECCTTGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh
Confidence 4689999999999999999999754 33444555555443 334432 578899999753
No 82
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.41 E-value=3e-07 Score=78.94 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=40.6
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccc-cCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++...... ....|++.....+.++. .+.++||||.-
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh
Confidence 357899999999999999999997653221 12334444444444432 68899999964
No 83
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.41 E-value=1.3e-06 Score=78.01 Aligned_cols=85 Identities=15% Similarity=0.128 Sum_probs=62.6
Q ss_pred hhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHH----HHHHHH-------hCceEEEeeC
Q 017132 118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAW----ATYFAK-------QGTKVIFSNG 184 (376)
Q Consensus 118 idr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w----~~~~~~-------~g~~vi~iSa 184 (376)
.+.+|+|++|+|+..+.......+..++. +.|.++|+||+|+.+....... .+.+.. .+..++++|+
T Consensus 113 ~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA 192 (223)
T 4dhe_A 113 RPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSA 192 (223)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBT
T ss_pred CcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeec
Confidence 44488999999999876655555555553 6899999999999987654332 233333 3457889999
Q ss_pred cCCcchhhhhHHHHHhhh
Q 017132 185 QLGMGTMKLSRLAKALAS 202 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~l~~ 202 (376)
++|.|+.++.+.+.+...
T Consensus 193 ~~g~gv~~l~~~l~~~~~ 210 (223)
T 4dhe_A 193 LKRTGLDDAHALIESWLR 210 (223)
T ss_dssp TTTBSHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHhcC
Confidence 999999999887766543
No 84
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.41 E-value=1.7e-07 Score=80.87 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=39.7
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i~ 274 (376)
..++|+++|.+|||||||+|+|++.......+..|.+.. .+.. +..+.++||||...
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYKNLKLNVWDLGGQTS 74 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEETTEEEEEEEEC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE--EEEECCEEEEEEECCCCHh
Confidence 357899999999999999999996554455566664433 2333 45788999999854
No 85
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.40 E-value=3.9e-07 Score=76.82 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=38.2
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++.. .....++++.+.. .+.++. .+.++||||.-
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~ 63 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 63 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc--cCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcc
Confidence 4689999999999999999999765 2344444444432 233333 57899999964
No 86
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.40 E-value=2.2e-07 Score=78.88 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=39.3
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeC-C--eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFG-K--DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~-~--~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.. ......|.++.+. ..+.++ . .+.++||||.-
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENK-FNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCC-CCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 35789999999999999999999754 3333444444443 334443 2 46788999963
No 87
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.40 E-value=2.2e-07 Score=80.85 Aligned_cols=56 Identities=18% Similarity=0.262 Sum_probs=39.4
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i~ 274 (376)
.++|+++|.+|||||||+|+|++.......+..|.+... +.. +..+.++||||.-.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE--IVINNTRFLMWDIGGQES 72 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEE--EEETTEEEEEEECCC---
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEE--EEECCEEEEEEECCCCHh
Confidence 578999999999999999999966544455555544332 222 45789999999853
No 88
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.40 E-value=3.4e-07 Score=78.24 Aligned_cols=56 Identities=20% Similarity=0.262 Sum_probs=41.2
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++.. ......+.++.+.. .+.++. .+.++||||.-
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH
Confidence 4789999999999999999999654 33444566665543 333433 58899999964
No 89
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.40 E-value=2.2e-07 Score=80.90 Aligned_cols=56 Identities=27% Similarity=0.425 Sum_probs=39.5
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|.+.......+..|.+.. .+.. +..+.++||||.-
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~ 77 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLE--TLQYKNISFEVWDLGGQT 77 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEE--EEEETTEEEEEEEECCSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEE--EEEECCEEEEEEECCCCH
Confidence 357899999999999999999986554333333443322 2223 4478999999974
No 90
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.40 E-value=3.6e-07 Score=77.26 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=39.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i~ 274 (376)
..++|+++|.+|||||||+|+|.+.. ......|.++.+. ..+..+. .+.++||||.-.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGI-FTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC-CCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh
Confidence 35789999999999999999999754 2223333333332 3333333 578999999653
No 91
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.40 E-value=3.9e-07 Score=79.33 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=41.8
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccc-cccCCCCceeEEEEEEeC---CeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG---KDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pg~T~~~~~~~~~---~~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.... ...+..|+|.....+..+ ..+.++||||.-
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcH
Confidence 3578999999999999999999976532 223445656555544443 257899999964
No 92
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.39 E-value=2.6e-07 Score=81.41 Aligned_cols=58 Identities=28% Similarity=0.319 Sum_probs=37.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhccc-ccccCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++... ....+..|++.....+.++. .+.++||||.-
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 88 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc
Confidence 357899999999999999999997542 23445556666555555543 47899999964
No 93
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.39 E-value=6.4e-07 Score=77.83 Aligned_cols=106 Identities=16% Similarity=-0.016 Sum_probs=60.6
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCCCCHHh-HHHHHHHHHHhCceEEEeeCc
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQ 185 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~-~~~w~~~~~~~g~~vi~iSa~ 185 (376)
....+..+|+++.|+|+..+.+..+ ..+..+. ...|.++|+||+|+..... ......+....+..++.+|++
T Consensus 81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (195)
T 1x3s_A 81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAK 160 (195)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCC
Confidence 4466889999999999987543222 1122222 2468899999999964322 122334445567788899999
Q ss_pred CCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcch
Q 017132 186 LGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSS 232 (376)
Q Consensus 186 ~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKST 232 (376)
+|.|+.++.+.+.+........ .--+.+|+||||
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~~~-------------~~~~~~n~gkSs 194 (195)
T 1x3s_A 161 TCDGVQCAFEELVEKIIQTPGL-------------WESENQNSGPSS 194 (195)
T ss_dssp TCTTHHHHHHHHHHHHHTSGGG-------------TCC---------
T ss_pred CCCCHHHHHHHHHHHHHhhhhh-------------hcccccCCCCCC
Confidence 9999998877665443221110 111345999998
No 94
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.39 E-value=1.4e-07 Score=93.49 Aligned_cols=56 Identities=38% Similarity=0.587 Sum_probs=46.0
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEeC--CeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG--KDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~~--~~i~l~DTpG~i~ 274 (376)
..|+|||+||||||||||+|++.. ..+++.|++|++... +..+ ..+.+.||||++.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~-~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~ 217 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIE 217 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC-ccccCcccceecceeeEEEecCcceEEEEecccccc
Confidence 358999999999999999999764 478899999987653 3333 5689999999975
No 95
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.38 E-value=4.4e-07 Score=79.04 Aligned_cols=58 Identities=24% Similarity=0.322 Sum_probs=39.7
Q ss_pred CceEEeEeecCCCCcchhhhhhhhccccc-ccCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++..... ..+..+++.....+.++. .+.++||||.-
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCch
Confidence 35789999999999999999999754221 222333333344444443 58899999963
No 96
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.38 E-value=2.7e-07 Score=80.48 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=42.5
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.. ......+++|.+.. .+..+. .+.++||||.-
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-CCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 35789999999999999999999754 44555666666643 344433 57899999964
No 97
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.38 E-value=3.2e-07 Score=78.55 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=41.7
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i~ 274 (376)
..++|+++|.+|||||||+|+|++.. ...+.+.+|.+.. .+..+. .+.++||||.-.
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 69 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEE 69 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchh
Confidence 35789999999999999999999753 3455666665532 233332 578899999753
No 98
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.37 E-value=4.3e-07 Score=78.43 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=41.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.. ......+.++.+. ..+..+. .+.++||||.-
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK-FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 35789999999999999999999754 3334455555554 3334443 67899999963
No 99
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.37 E-value=2.3e-07 Score=78.69 Aligned_cols=55 Identities=27% Similarity=0.331 Sum_probs=36.0
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccc--cccCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMC--PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~--~v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++.... .......+++. ....+. .+.++||||.-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~~Dt~G~~ 62 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ--VISCDKSICTLQITDTTGSH 62 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE--EEEETTEEEEEEEEECCSCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE--EEEECCEEEEEEEEECCCch
Confidence 468999999999999999999975421 11112222222 222222 47899999975
No 100
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.37 E-value=2.4e-07 Score=81.98 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=41.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i~ 274 (376)
..++|+++|.+|||||||+|+|++.. ......|.+|.+. ..+.++. .+.++||||.-.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 81 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK-FNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC-CCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-CCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 35789999999999999999999754 3344555555554 3344443 588999999753
No 101
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.37 E-value=4.3e-07 Score=94.09 Aligned_cols=130 Identities=17% Similarity=0.105 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHH-HH-hcCCCeEEEEEccCCCCHH---hHHHHHHHHHHhCce
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-QW-LGNRKRILVLNREDMISMA---DRNAWATYFAKQGTK 178 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~-~~-l~~kp~ilVlNK~DL~~~~---~~~~w~~~~~~~g~~ 178 (376)
||| ..+..++...+..+|.++.|+|+..+......... .. ..+.|+++|+||+|+.+.. ..+.|.+.+.-....
T Consensus 79 PGh-~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~ 157 (599)
T 3cb4_D 79 PGH-VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATD 157 (599)
T ss_dssp CCC-GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTT
T ss_pred CCc-hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcce
Confidence 676 44566677789999999999999887654332221 12 2478999999999998632 233343332111124
Q ss_pred EEEeeCcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeec---CCCCcchhhhhhhhc
Q 017132 179 VIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGY---PNVGKSSLINRLLKR 240 (376)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~---pNvGKSTLiN~L~~~ 240 (376)
++++|+++|.|+.+|.+.+.+..+.. .+....+.+..++.. +++|+.++++-+.|.
T Consensus 158 vi~vSAktg~GI~~Ll~~I~~~lp~p------~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~ 216 (599)
T 3cb4_D 158 AVRCSAKTGVGVQDVLERLVRDIPPP------EGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGT 216 (599)
T ss_dssp CEEECTTTCTTHHHHHHHHHHHSCCC------CCCTTSCCEEEEEEEEEETTTEEEEEEEEEESC
T ss_pred EEEeecccCCCchhHHHHHhhcCCCc------cccccCCceeeeeeccccccccEEEEEEEEeCE
Confidence 89999999999998877765543321 111234555555555 899999999998764
No 102
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.36 E-value=4.2e-07 Score=76.75 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=37.7
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeC-C--eEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-K--DLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~-~--~i~l~DTpG~i~ 274 (376)
.++|+++|.+|||||||+|+|++... ......++.+.. ...++ . .+.++||||.-.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 63 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQ 63 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHH
Confidence 36899999999999999999997542 233333333322 22232 2 478999999753
No 103
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.36 E-value=4.5e-07 Score=78.83 Aligned_cols=58 Identities=28% Similarity=0.324 Sum_probs=41.5
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccc-cccCCCCceeEEEEEEeCC---eEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i~ 274 (376)
.++|+++|.+|||||||+|+|++.... ...+..|++.....+.++. .+.++||||.-.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 76 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchh
Confidence 478999999999999999999975422 2233445555555555533 578999999753
No 104
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.36 E-value=4.9e-07 Score=79.55 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=41.2
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccc-cccCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++.... ...+..|+|.....+..+. .+.++||||.-
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCch
Confidence 478999999999999999999975422 2233445555555555432 67899999974
No 105
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.36 E-value=4.3e-07 Score=79.14 Aligned_cols=56 Identities=20% Similarity=0.184 Sum_probs=38.0
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEe-CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~-~~~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++....... ...|.+. ..+.. +..+.++||||.-
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~ 78 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSSLSFTVFDMSGQG 78 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSSCEEEEEEECCST
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECCEEEEEEECCCCH
Confidence 3578999999999999999999976521211 1223332 22233 4578999999964
No 106
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.36 E-value=4.8e-07 Score=78.74 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=23.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
..++|+++|.+|||||||+|+|++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 35789999999999999999999764
No 107
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.35 E-value=3.2e-07 Score=80.81 Aligned_cols=57 Identities=19% Similarity=0.309 Sum_probs=40.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.. ......+.+|.+... +.++. .+.++||||.-
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcH
Confidence 35789999999999999999999764 333444555555433 33332 57899999974
No 108
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.35 E-value=3.8e-07 Score=79.92 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=41.1
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i~ 274 (376)
..+|+++|.+|||||||+|+|++.......+..+.+.. .+.. +..+.++||||.-.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE--ELAIGNIKFTTFDLGGHIQ 79 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEE--EEEETTEEEEEEECCCSGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeE--EEEECCEEEEEEECCCCHH
Confidence 35799999999999999999998664445555565532 3333 44788999999853
No 109
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.35 E-value=3.1e-07 Score=91.84 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=43.3
Q ss_pred CceEEeEeecCCCCcchhhhhhhhccccc------------------------------ccCCCCceeEEEEEEe---CC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP------------------------------AAPRPGVTRVLKWVRF---GK 262 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~------------------------------v~~~pg~T~~~~~~~~---~~ 262 (376)
..++|+++|.+|+|||||+|+|++..... .+..+|+|.+.....+ +.
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 35789999999999999999996542211 1223789999765544 45
Q ss_pred eEEEEeCCCCc
Q 017132 263 DLEFLDSPGII 273 (376)
Q Consensus 263 ~i~l~DTpG~i 273 (376)
.+.++||||..
T Consensus 96 ~~~iiDTPGh~ 106 (439)
T 3j2k_7 96 HFTILDAPGHK 106 (439)
T ss_pred EEEEEECCChH
Confidence 79999999974
No 110
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.35 E-value=6.9e-07 Score=74.95 Aligned_cols=55 Identities=25% Similarity=0.265 Sum_probs=37.6
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i~ 274 (376)
++|+++|.+|||||||+|+|.+... ......++.+. ..+..+. .+.++||||.-.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~ 63 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEE 63 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCchh
Confidence 5799999999999999999997542 23333444332 2233332 367899999753
No 111
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.33 E-value=4.5e-07 Score=80.56 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=41.9
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeC----CeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFG----KDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~----~~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++.. .....+.++.+...+.++ ..+.++||||.-
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE 65 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC--CCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--cccccCCcceeeEEEEecCCCccEEEEEECCCCh
Confidence 4689999999999999999999755 345556666665555553 358999999974
No 112
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.33 E-value=6.5e-07 Score=77.06 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=39.3
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i~ 274 (376)
.++|+++|.+|||||||+|+|++.. ..+....++.+. ..+..+. .+.++||||.-.
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchh
Confidence 4789999999999999999999654 344444444432 2333332 467999999753
No 113
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.32 E-value=5.1e-07 Score=79.09 Aligned_cols=57 Identities=26% Similarity=0.317 Sum_probs=37.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeE--EEEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~--~~~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++... .....+..+.+ ...+.++. .+.++||||.-
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTF-CEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCC-CcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcH
Confidence 357899999999999999999997542 22333444433 44444443 57899999964
No 114
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.32 E-value=5.1e-07 Score=77.31 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=39.0
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeE--EEEEEeC----CeEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG----KDLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~--~~~~~~~----~~i~l~DTpG~i~ 274 (376)
..++|+++|.+|||||||+|+|++... .....|.++.+ ...+.++ ..+.++||||.-.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~ 68 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETF-GKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI 68 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGT-THHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc
Confidence 457899999999999999999997542 12212333222 3333443 3688999999753
No 115
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.32 E-value=8e-07 Score=76.46 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=40.2
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~~~---~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++.. .....+++|.+... +.++. .+.++||||.-
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 77 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC--CCCcCCCccceEEEEEEEECCEEEEEEEEECCCCc
Confidence 4789999999999999999999765 34455555554332 33333 57899999964
No 116
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.31 E-value=7e-07 Score=79.14 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=39.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEE--Ee-CCe--EEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWV--RF-GKD--LEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~--~~-~~~--i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.. ..+....+|.+.... .+ +.. +.++||||.-
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 89 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSC--CCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCC--CCCCcCCeecceeEEEEEECCEEEEEEEEECCCch
Confidence 35789999999999999999999643 345556666654332 22 333 4599999984
No 117
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.31 E-value=8.9e-07 Score=77.74 Aligned_cols=56 Identities=20% Similarity=0.169 Sum_probs=41.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.. .....+++|.+.. .+.++. .+.++||||.-
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 73 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQE 73 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChh
Confidence 35789999999999999999999765 3445556655533 233343 57899999964
No 118
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.30 E-value=3.5e-07 Score=80.81 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=36.7
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
..+|+++|.+|||||||+|+|++.......+..+.+.. .+.+ +..+.++||||.-
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~~~l~i~Dt~G~~ 80 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAGMTFTTFDLGGHI 80 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETTEEEEEEEECC--
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEECCEEEEEEECCCcH
Confidence 46899999999999999999997654444455555533 3333 3478899999964
No 119
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.30 E-value=5.9e-07 Score=75.81 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=36.9
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
++|+++|.+|||||||+|+|++.... ...|........+.. +..+.++||||.-
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIPTIGFNVETVEYKNISFTVWDVGGQD 55 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--CCCCCSSCCEEEEECSSCEEEEEECCCCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--cccCcCceeEEEEEECCEEEEEEEcCCCh
Confidence 36999999999999999999875532 233321111222232 4578999999984
No 120
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.30 E-value=8.1e-07 Score=77.17 Aligned_cols=55 Identities=24% Similarity=0.205 Sum_probs=38.1
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++.. ......++|.+.. .+..+. .+.++||||.-
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCC--CccccCCccceEEEEEEEECCEEEEEEEEECCChH
Confidence 4789999999999999999999754 2344445554432 233332 37899999964
No 121
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.30 E-value=4.7e-07 Score=80.69 Aligned_cols=59 Identities=20% Similarity=0.214 Sum_probs=41.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccc-cccCCCCceeEEEEEEeC----CeEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG----KDLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pg~T~~~~~~~~~----~~i~l~DTpG~i~ 274 (376)
..++|+++|.+|||||||+|+|++.... ......+++......... ..+.++||||.-.
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 73 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEK 73 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchh
Confidence 3578999999999999999999965422 234455555544443332 2478999999754
No 122
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.30 E-value=2.5e-07 Score=81.39 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=37.1
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i 273 (376)
.++|++||.||||||||+|++++.....+++.+.++.+. ..+.++. .+.++||+|.-
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC-
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCc
Confidence 468999999999999999999975443444444444443 2334433 35689999964
No 123
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.30 E-value=6.3e-07 Score=78.22 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=40.0
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccc-cCCCCceeEEEEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA-APRPGVTRVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v-~~~pg~T~~~~~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++...... ....|++.....+.++. .+.++||||.-
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 81 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGG
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCch
Confidence 357899999999999999999997653221 22234444444555543 67899999974
No 124
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.29 E-value=7e-07 Score=78.80 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=41.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.. ......|.++.+. ..+.++. .+.++||||.-
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT-YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC-CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChH
Confidence 35789999999999999999999754 3334445554443 3444443 58899999974
No 125
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.29 E-value=6.6e-07 Score=78.12 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=38.7
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccc--cCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v--~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
...+|+++|.+|||||||+|+|++.....+ .+..|.+.. .+.. +..+.++||||.-
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~ 74 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFEKGRVAFTVFDMGGAK 74 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEEETTEEEEEEEECCSG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEEeCCEEEEEEECCCCH
Confidence 357899999999999999999997664433 444453332 2222 4468999999984
No 126
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.28 E-value=2.9e-06 Score=83.71 Aligned_cols=104 Identities=17% Similarity=0.165 Sum_probs=72.9
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc-HH---HHHHhcCCCeEEEEEccCCCCHH
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-PL---MDQWLGNRKRILVLNREDMISMA 163 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~-~~---l~~~l~~kp~ilVlNK~DL~~~~ 163 (376)
..+.++| .||| ..+.+.+...+..+|+++.|+|++.+....+ .+ +...+..+|.++|+||+|+.+.+
T Consensus 75 ~~~~iiD--------tPGh-~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 75 RRISFID--------APGH-EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp EEEEEEE--------CCCC-GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred ceEEEEE--------CCCc-HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchH
Confidence 3466677 2665 4566677778899999999999998752211 11 22223457899999999999877
Q ss_pred hHHHHHHHHHH----h---CceEEEeeCcCCcchhhhhHHHHHh
Q 017132 164 DRNAWATYFAK----Q---GTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 164 ~~~~w~~~~~~----~---g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
....+.+.+.+ . +..++++|+++|.|+.+|.+.+.+.
T Consensus 146 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~ 189 (403)
T 3sjy_A 146 EALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY 189 (403)
T ss_dssp HHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHh
Confidence 55444333322 1 3579999999999999998887764
No 127
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.28 E-value=5.2e-07 Score=77.29 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=36.0
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeE--EEEEEeC----CeEEEEeCCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG----KDLEFLDSPGI 272 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~--~~~~~~~----~~i~l~DTpG~ 272 (376)
..++|+++|.+|||||||+|+|++.. ......|.++.+ ...+.++ ..+.++||||.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 68 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK-YSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-CCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc-CCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCC
Confidence 35789999999999999999999754 222333433333 3333333 25789999995
No 128
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.28 E-value=5.1e-07 Score=79.68 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=35.5
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeE--EEEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~--~~~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.. ......+.++.+ ...+.++. .+.++||||.-
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 85 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK-FKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcH
Confidence 45789999999999999999999654 333334444433 33444443 68899999964
No 129
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.27 E-value=7.6e-07 Score=77.59 Aligned_cols=56 Identities=16% Similarity=0.282 Sum_probs=38.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccc-cccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.... ...+..|.+. ..+.. +..+.++||||.-
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~ 78 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM--RKITKGNVTIKLWDIGGQP 78 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE--EEEEETTEEEEEEEECCSH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeE--EEEEeCCEEEEEEECCCCH
Confidence 3578999999999999999999975422 1222233332 22222 4468899999974
No 130
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.27 E-value=2.3e-07 Score=96.42 Aligned_cols=58 Identities=26% Similarity=0.349 Sum_probs=43.1
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccC------------------------------CCCceeEEEEEEe---CC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP------------------------------RPGVTRVLKWVRF---GK 262 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~------------------------------~pg~T~~~~~~~~---~~ 262 (376)
..++|++||.+|||||||+|+|++.......+ .+|+|.+.....+ +.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 45789999999999999999998653222111 3688988644333 45
Q ss_pred eEEEEeCCCCc
Q 017132 263 DLEFLDSPGII 273 (376)
Q Consensus 263 ~i~l~DTpG~i 273 (376)
.+.++||||..
T Consensus 246 ~~~iiDTPG~e 256 (611)
T 3izq_1 246 NFTIVDAPGHR 256 (611)
T ss_dssp EEEEEECCSSS
T ss_pred eEEEEECCCCc
Confidence 79999999984
No 131
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.27 E-value=7.6e-07 Score=78.45 Aligned_cols=56 Identities=23% Similarity=0.295 Sum_probs=37.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe---CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF---GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~---~~~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.... .....++.+... ..+ ...+.++||||.-
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 83 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQD 83 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCcc
Confidence 3578999999999999999999976532 333333333222 222 2246899999964
No 132
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.26 E-value=1.3e-06 Score=76.42 Aligned_cols=56 Identities=27% Similarity=0.357 Sum_probs=38.1
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeE--EEEEEeC---CeEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG---KDLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~--~~~~~~~---~~i~l~DTpG~i~ 274 (376)
.++|+++|.+|||||||+|+|++.... .....++.+ ...+.++ ..+.++||||...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 88 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc
Confidence 578999999999999999999976422 222222222 2223333 2478999999865
No 133
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.26 E-value=1e-06 Score=76.17 Aligned_cols=57 Identities=18% Similarity=0.206 Sum_probs=38.0
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE---EEEEeC------------CeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL---KWVRFG------------KDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~---~~~~~~------------~~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++... .....+..+.+. ..+..+ ..+.++||||.-
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 81 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKF-NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLE 81 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSG
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCC-CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcH
Confidence 357899999999999999999997542 222223222222 233332 258899999983
No 134
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.26 E-value=1.7e-07 Score=97.18 Aligned_cols=58 Identities=26% Similarity=0.261 Sum_probs=30.0
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccc------------------------------cCCCCceeEEEEEEe---CC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA------------------------------APRPGVTRVLKWVRF---GK 262 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v------------------------------~~~pg~T~~~~~~~~---~~ 262 (376)
..++|+++|.+|+|||||+|+|++...... ...+|+|.+.....+ +.
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 357899999999999999999975322211 125789998765444 35
Q ss_pred eEEEEeCCCCc
Q 017132 263 DLEFLDSPGII 273 (376)
Q Consensus 263 ~i~l~DTpG~i 273 (376)
.+.|+||||..
T Consensus 256 ~i~iiDTPGh~ 266 (592)
T 3mca_A 256 IYEIGDAPGHR 266 (592)
T ss_dssp ---CCEEESSS
T ss_pred EEEEEECCChH
Confidence 78999999974
No 135
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.26 E-value=1.4e-06 Score=75.07 Aligned_cols=56 Identities=21% Similarity=0.211 Sum_probs=37.5
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC-e--EEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK-D--LEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~-~--i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.. .......++.+. .....+. . +.++||||.-
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI--FVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQE 77 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCccceeEEEEEeCCcEEEEEEEECCCch
Confidence 35789999999999999999999653 233333333332 2233333 2 5569999964
No 136
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.26 E-value=8.5e-07 Score=77.86 Aligned_cols=57 Identities=23% Similarity=0.163 Sum_probs=37.0
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEeCC---eEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~~~---~i~l~DTpG~i~ 274 (376)
..++|+++|.+|||||||+|+|++.. .....+.||.+... +..+. .+.++||||.-.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHH
Confidence 45789999999999999999999754 34555666655432 23333 466999999853
No 137
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.25 E-value=4.8e-07 Score=76.75 Aligned_cols=56 Identities=20% Similarity=0.033 Sum_probs=32.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i~ 274 (376)
++|+++|.+|||||||+|+|++..... ...+..|.+.. .+.++. .+.+.||||.-.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 63 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDH-AHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcc-cccCCCcCCeeeEEEEECCeEEEEEEEECCCccc
Confidence 579999999999999999998644222 22233334332 233333 467899999853
No 138
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.25 E-value=1.1e-06 Score=77.96 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=40.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~ 272 (376)
..++|+++|.+|||||||+|+|++.. ......+.++.+. ..+.++. .+.++||||.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 85 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS-CCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc
Confidence 35789999999999999999999754 3334445544453 3344443 5789999996
No 139
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.25 E-value=1.5e-06 Score=75.86 Aligned_cols=58 Identities=28% Similarity=0.306 Sum_probs=36.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhhccccc-ccCCCCceeEEEEEEeCC---eEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCP-AAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~-v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i~ 274 (376)
..++|+++|.+|||||||+|+|++..... ..+..+.+.. .....+. .+.++||||.-.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQ 68 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHH
Confidence 35789999999999999999999754211 1111122211 1222222 578999999753
No 140
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.25 E-value=2.9e-07 Score=79.46 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=25.2
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++.. ......|.++.+.. .+.++. .+.++||||.-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA-FNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh
Confidence 5789999999999999999999643 33344455665543 334433 57899999964
No 141
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.24 E-value=1e-06 Score=75.52 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=38.8
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEeCC---eEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~~~---~i~l~DTpG~i~ 274 (376)
.++|+++|.+|||||||+|+|++.......+..+.+. ...+.++. .+.+.||||...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 66 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD 66 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch
Confidence 4789999999999999999999765333233333322 22333332 467899999753
No 142
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.23 E-value=4.7e-07 Score=79.82 Aligned_cols=57 Identities=21% Similarity=0.117 Sum_probs=40.3
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
..++|++||.+|||||||+|+|++.. ......|++|.+.. .+.++. .+.+.||+|.-
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQ-GDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEE-CCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhcc-CCccCCCCcccceEEEEEEECCEEEEEEEEecCCCc
Confidence 35789999999999999999998643 23345566665543 233333 35678999984
No 143
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.23 E-value=5e-07 Score=79.37 Aligned_cols=57 Identities=23% Similarity=0.231 Sum_probs=17.9
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCcee-EE--EEEEeCC-----eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTR-VL--KWVRFGK-----DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~-~~--~~~~~~~-----~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++......+....+|. +. ..+.++. .+.++||||.-
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 4789999999999999999999763223344444442 32 3344433 48899999973
No 144
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.22 E-value=8.3e-07 Score=76.40 Aligned_cols=55 Identities=22% Similarity=0.165 Sum_probs=37.2
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeC-C--eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-K--DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~-~--~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++.. .......++.+.. .+.++ . .+.++||||.-
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 64 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS--CCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC--CCCCcCCcccceeEEEEEECCEEEEEEEEECCCCH
Confidence 4789999999999999999999653 2233333443322 22232 2 35699999984
No 145
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.22 E-value=3.2e-07 Score=80.13 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=41.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccc-cccCCCCceeEEEEEEeC---CeEEEEeCCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLKWVRFG---KDLEFLDSPGI 272 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pg~T~~~~~~~~~---~~i~l~DTpG~ 272 (376)
..++|+++|.+|||||||+|+|++.... ...+..|++.....+..+ ..+.++||||.
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 82 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCCh
Confidence 3578999999999999999999975421 223344666665555542 25889999994
No 146
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.21 E-value=1.1e-06 Score=76.65 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=38.3
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i~ 274 (376)
..++|+++|.+|||||||+|+|++.. ..+....++.+.. ...++. .+.++||||.-.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR--FISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDT 81 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC--CCcccCCCccceeeEEEEECCEEEEEEEEECCCCCc
Confidence 35789999999999999999999754 2344445554432 223332 467899999753
No 147
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.21 E-value=5.2e-07 Score=79.42 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=40.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.. ......+++|.+. ..+..+. .+.++||||.-
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDT-YTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCC-CCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC-CCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcH
Confidence 35789999999999999999999754 3333344444443 3444443 57899999964
No 148
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.21 E-value=1.2e-06 Score=78.67 Aligned_cols=56 Identities=18% Similarity=0.307 Sum_probs=37.5
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCce--eEEEEEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVT--RVLKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T--~~~~~~~~~~---~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++... .....|..+ .....+.++. .+.++||||.-
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEF-NMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCC-CC------CCSEEEEEEEETTEEEEEEEECCTTTT
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEECCCcc
Confidence 47899999999999999999997642 222233333 3333444443 68899999964
No 149
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.21 E-value=1.8e-05 Score=68.41 Aligned_cols=83 Identities=27% Similarity=0.390 Sum_probs=59.7
Q ss_pred hhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHH----HHHhC-ceEEEeeCcCCcch
Q 017132 118 LKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATY----FAKQG-TKVIFSNGQLGMGT 190 (376)
Q Consensus 118 idr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~----~~~~g-~~vi~iSa~~g~gi 190 (376)
.+.+|+++.|+|+..+.......+..++. +.|.++|+||+|+.+..+.....+. +...+ ..++.+|++.|.|+
T Consensus 102 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 181 (195)
T 3pqc_A 102 RWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGI 181 (195)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTH
T ss_pred CcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 45569999999998766555555555543 6899999999999876554433322 22223 57899999999999
Q ss_pred hhhhHHHHHh
Q 017132 191 MKLSRLAKAL 200 (376)
Q Consensus 191 ~~L~~~l~~l 200 (376)
.++.+.+.+.
T Consensus 182 ~~l~~~l~~~ 191 (195)
T 3pqc_A 182 SELLDLISTL 191 (195)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9987776554
No 150
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.21 E-value=4.9e-07 Score=91.37 Aligned_cols=57 Identities=26% Similarity=0.371 Sum_probs=41.1
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcc------------------------------cccccCCCCceeEEEEEEe---CCe
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRR------------------------------MCPAAPRPGVTRVLKWVRF---GKD 263 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~------------------------------~~~v~~~pg~T~~~~~~~~---~~~ 263 (376)
.++|+++|.+|+|||||+|+|++.. ....+..+|+|.+.....+ +..
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~ 112 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 112 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCce
Confidence 5789999999999999999997641 1122344688888655444 457
Q ss_pred EEEEeCCCCc
Q 017132 264 LEFLDSPGII 273 (376)
Q Consensus 264 i~l~DTpG~i 273 (376)
+.++||||.-
T Consensus 113 ~~iiDTPG~~ 122 (483)
T 3p26_A 113 FTIVDAPGHR 122 (483)
T ss_dssp EEEECCCCCG
T ss_pred EEEEECCCcH
Confidence 8999999984
No 151
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.20 E-value=1.2e-06 Score=77.29 Aligned_cols=57 Identities=23% Similarity=0.260 Sum_probs=38.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE-EEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~-~~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++... .....|.++.+. ..+.++. .+.++||||.-
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 84 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQF-PEVYVPTVFENYIADIEVDGKQVELALWDTAGQE 84 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSC-CSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcC-CcccCCcccceEEEEEEECCEEEEEEEEECCCch
Confidence 357899999999999999999997542 222234333332 2233433 57899999974
No 152
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.20 E-value=6.8e-06 Score=71.41 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=60.8
Q ss_pred HHHHhhhc---CeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHH----HHH-hCceEEEee
Q 017132 114 LKDQLKLM---DVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATY----FAK-QGTKVIFSN 183 (376)
Q Consensus 114 l~~vidr~---dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~----~~~-~g~~vi~iS 183 (376)
....+..+ |+++.|+|+..+.+..+.++..++. +.|.++|+||+|+.+..+.....+. +.. .+..++.+|
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS 175 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEE
Confidence 33444444 9999999998876665555555553 6899999999999987654332222 321 246788999
Q ss_pred CcCCcchhhhhHHHHH
Q 017132 184 GQLGMGTMKLSRLAKA 199 (376)
Q Consensus 184 a~~g~gi~~L~~~l~~ 199 (376)
+++|.|+.++.+.+.+
T Consensus 176 a~~~~gv~~l~~~l~~ 191 (195)
T 1svi_A 176 SETKKGKDEAWGAIKK 191 (195)
T ss_dssp TTTCTTHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHH
Confidence 9999999988776654
No 153
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.19 E-value=9.8e-07 Score=89.23 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=39.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i 273 (376)
..++|++||.||||||||+|+|++.......++.|++.. .+.. +..+.++||||.-
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~--~~~~~~~~~~l~Dt~G~~ 377 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTYKNVKFNVWDVGGQD 377 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEESSSCEEEEEEECCCG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEE--EEEeCCEEEEEEECCCcH
Confidence 357899999999999999999998763333333332222 2222 4578999999964
No 154
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.19 E-value=1.6e-06 Score=76.73 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=36.0
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE-EEEEeCC---eEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~-~~~~~~~---~i~l~DTpG~i~ 274 (376)
.++|+++|.+|||||||+|+|++.... ....|.++.+. ..+.++. .+.++||||.-.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 85 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQED 85 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEECCEEEEEEEEECCCcHH
Confidence 468999999999999999999975422 12222222222 2233333 578999999753
No 155
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.19 E-value=7.4e-07 Score=80.13 Aligned_cols=56 Identities=18% Similarity=0.079 Sum_probs=37.4
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGI 272 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~ 272 (376)
..+|++||.||||||||+|++++.....+...+.++.+. ..+.++. .+.++||+|.
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~ 97 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 97 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCC
Confidence 478999999999999999999975443344444444332 3334433 3578999995
No 156
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.19 E-value=1.4e-06 Score=76.00 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=38.0
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeC-C--eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-K--DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~-~--~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.. .......++.+.. .+..+ . .+.++||||.-
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE--IPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC--CCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC--CCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence 45789999999999999999999765 2333333443322 22232 2 35899999953
No 157
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.17 E-value=1.4e-06 Score=76.41 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=35.2
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe-CCeEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF-GKDLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~i~ 274 (376)
..++|+++|.+|||||||+|+|++.......+..+. ....+.. +..+.++||||.-.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~Dt~G~~~ 85 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF--NVETVEYKNICFTVWDVGGQDK 85 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTE--EEEEEEETTEEEEEEECC----
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccCCcCce--eEEEEEECCEEEEEEECCCCHh
Confidence 357899999999999999999986543222222221 1222233 34688999999853
No 158
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.17 E-value=2e-06 Score=76.66 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=32.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++... ......++.+.. .+.++. .+.++||||.-
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQD 93 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC----
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCch
Confidence 357899999999999999999996542 233333443322 233333 57899999964
No 159
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.17 E-value=1.7e-06 Score=76.38 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=36.1
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE--EEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL--KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~--~~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.. ......+.++.+. ..+.++. .+.++||||.-
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA-FSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC-C----------CEEEEEEEETTEEEEEEEECCTTCG
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC-CCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 35789999999999999999999754 2222223222332 3344443 68899999964
No 160
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.14 E-value=7.8e-06 Score=77.64 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=78.8
Q ss_pred CCcEEEEcCCCCCcccChh---H-HHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHH-HHHhc--CCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPG---H-IAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQWLG--NRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PG---h-~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l-~~~l~--~kp~ilVlNK~DL 159 (376)
+..++++| +|.+.-+. . ...+.+.....+..+|+++.|+|+..+.+..+..+ ...+. +.|.++|+||+|+
T Consensus 58 ~~~i~lvD---TPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl 134 (308)
T 3iev_A 58 EAQIIFLD---TPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDK 134 (308)
T ss_dssp TEEEEEEE---CCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGG
T ss_pred CCeEEEEE---CcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccC
Confidence 56677887 34332221 0 12334445577899999999999988766655554 44443 6899999999999
Q ss_pred C-CHHhHHHHHHHHHHhC---ceEEEeeCcCCcchhhhhHHHHHhhh
Q 017132 160 I-SMADRNAWATYFAKQG---TKVIFSNGQLGMGTMKLSRLAKALAS 202 (376)
Q Consensus 160 ~-~~~~~~~w~~~~~~~g---~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (376)
. +......+.+.+.+.. ..++.+|+++|.|+.+|.+.+.+...
T Consensus 135 ~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 135 IGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp SSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 8 6665555656555443 57899999999999999887766543
No 161
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.13 E-value=2.6e-07 Score=94.42 Aligned_cols=57 Identities=30% Similarity=0.508 Sum_probs=45.0
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe----CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~----~~~i~l~DTpG~i 273 (376)
++++|+++|.+|+|||||+|+|++.. ......+|+|.+.....+ +..+.++||||.-
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~-~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe 63 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ-VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHA 63 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH-HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-cccccCCceeEEEeEEEEEeCCCCEEEEEECCChH
Confidence 45679999999999999999999765 445578899998643322 3478999999963
No 162
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.13 E-value=8.4e-07 Score=79.03 Aligned_cols=55 Identities=25% Similarity=0.330 Sum_probs=39.0
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccc--cCCCCceeEEEEEEeCCeEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPA--APRPGVTRVLKWVRFGKDLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v--~~~pg~T~~~~~~~~~~~i~l~DTpG~i~ 274 (376)
..++|+++|.+|||||||+|+|++...... +..|.++.+. ....+.++||||.-.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~ 67 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVK 67 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcHH
Confidence 357899999999999999999997642111 2334443332 245789999999953
No 163
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.12 E-value=8.6e-07 Score=78.89 Aligned_cols=56 Identities=18% Similarity=0.279 Sum_probs=36.5
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeC-------------CeEEEEeCCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG-------------KDLEFLDSPGI 272 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~-------------~~i~l~DTpG~ 272 (376)
..++|+++|.+|||||||+|+|++... .....+.++.+.. .+.++ ..+.|+||||.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 94 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKF-NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCC-CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCC-CcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc
Confidence 457899999999999999999996542 2222222222222 12221 24889999995
No 164
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.12 E-value=1.9e-06 Score=83.61 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=22.1
Q ss_pred eEEeEeecCCCCcchhhhhhhhcc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
++|++||.+|||||||+|+|+|..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 479999999999999999999865
No 165
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.10 E-value=8.6e-07 Score=76.11 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=31.4
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-C--CeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-G--KDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-~--~~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++.. .......++.+... +.+ + -.+.++||||.-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT--FPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQE 67 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC--CC----------CBCCCC-------CEEECCCC-C
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCCh
Confidence 4789999999999999999999754 23334444433211 111 2 235699999974
No 166
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.09 E-value=1.2e-06 Score=87.61 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.-|+|+|.+|+|||||||.|.+.
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHhhh
Confidence 35899999999999999999874
No 167
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.09 E-value=2.8e-06 Score=74.04 Aligned_cols=108 Identities=15% Similarity=0.059 Sum_probs=69.1
Q ss_pred ccCCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc------------CCCe
Q 017132 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG------------NRKR 150 (376)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l~------------~kp~ 150 (376)
..+..+.+|| +|.+ .+........+..+|+++.|+|+..+.+..+ ..+..++. +.|+
T Consensus 60 ~~~~~~~i~D---t~G~------~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pi 130 (199)
T 4bas_A 60 KGRVAFTVFD---MGGA------KKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPF 130 (199)
T ss_dssp ETTEEEEEEE---ECCS------GGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCE
T ss_pred eCCEEEEEEE---CCCC------HhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCE
Confidence 3455677777 2322 1222333356889999999999987643221 22333322 6799
Q ss_pred EEEEEccCCCCHHhHHHHHHHH------HHhCceEEEeeCcCCcchhhhhHHHHHhh
Q 017132 151 ILVLNREDMISMADRNAWATYF------AKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 151 ilVlNK~DL~~~~~~~~w~~~~------~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
++|.||+|+.+......+.+.+ ...+..++.+|+++|.|+.++.+.+.+..
T Consensus 131 ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 131 LFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp EEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred EEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 9999999998763333333322 23456788999999999999877765543
No 168
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.09 E-value=2.3e-06 Score=74.26 Aligned_cols=56 Identities=23% Similarity=0.224 Sum_probs=34.0
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccccccC-CCCceeEEEEEEe--------CCeEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAAP-RPGVTRVLKWVRF--------GKDLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-~pg~T~~~~~~~~--------~~~i~l~DTpG~i 273 (376)
++|+++|.+|||||||+|+|++......+. .|.++.+.....+ ...+.+.||+|.-
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 579999999999999999999743222232 3333344332221 2357899999963
No 169
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.08 E-value=3e-06 Score=73.41 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=36.5
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEE-EEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVL-KWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~-~~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++... .....|....+. ..+.++. .+.++||||.-
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 66 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 66 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCccceeEEEEEEECCEEEEEEEEECCCCh
Confidence 357899999999999999999997542 111122221111 1222322 57899999974
No 170
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.07 E-value=7.5e-06 Score=68.86 Aligned_cols=105 Identities=10% Similarity=0.083 Sum_probs=67.2
Q ss_pred cCCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHhc-----CCCeEEEEEccC
Q 017132 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNRED 158 (376)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~--~~~l~~~l~-----~kp~ilVlNK~D 158 (376)
.+..+.+|| + ||+ ..........+..+|+++.|+|+.++.+.. ...+..++. +.|.++|.||+|
T Consensus 42 ~~~~~~i~D---t-----~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~D 112 (164)
T 1r8s_A 42 KNISFTVWD---V-----GGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQD 112 (164)
T ss_dssp SSCEEEEEE---C-----CCC-GGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CCEEEEEEE---c-----CCC-hhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcC
Confidence 345677777 2 333 222334446789999999999998764322 122333332 578999999999
Q ss_pred CCCHHhHHHHHHHHHH-----hCceEEEeeCcCCcchhhhhHHHHH
Q 017132 159 MISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 159 L~~~~~~~~w~~~~~~-----~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
+.+......+.+.+.. .+..++.+|+++|.|+.++.+.+.+
T Consensus 113 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (164)
T 1r8s_A 113 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158 (164)
T ss_dssp STTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHH
Confidence 9765333333333321 2346888999999999988776654
No 171
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.06 E-value=1.1e-05 Score=76.55 Aligned_cols=112 Identities=16% Similarity=0.077 Sum_probs=74.6
Q ss_pred cCCcEEEEcCCCCCcccChhHH--HHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc----CCCeEEEEEccCC
Q 017132 86 LDADLYYWTKSLRPVQWYPGHI--AKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG----NRKRILVLNREDM 159 (376)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~PGh~--~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~----~kp~ilVlNK~DL 159 (376)
.+..+++|| +|.+.-|.+. ..+.+.....+..+|+++.|+|+..+.+..+..+...+. +.|+++|+||+|+
T Consensus 53 ~~~~l~l~D---TpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl 129 (301)
T 1wf3_A 53 GRRQIVFVD---TPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 129 (301)
T ss_dssp TTEEEEEEE---CCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGG
T ss_pred CCcEEEEec---CccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECccc
Confidence 456677887 4444333221 123444556789999999999998876655544443332 6899999999999
Q ss_pred CCHHh-HHHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHHhh
Q 017132 160 ISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 160 ~~~~~-~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
.+... ...+.+.+ .....++++|+++|.|+..|.+.+.+..
T Consensus 130 ~~~~~~~~~~~~~~-~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 130 AKYPEEAMKAYHEL-LPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp CSSHHHHHHHHHHT-STTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CCchHHHHHHHHHh-cCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 87654 33333333 1224688999999999998887776543
No 172
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.06 E-value=3.3e-06 Score=75.41 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=36.6
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeC---CeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFG---KDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~---~~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++... ......++.+.. .+.++ -.+.++||||.-
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSP 86 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCH
Confidence 357899999999999999999997542 233223332221 22222 247899999964
No 173
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.06 E-value=2.5e-06 Score=74.41 Aligned_cols=56 Identities=20% Similarity=0.136 Sum_probs=39.2
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i~ 274 (376)
.++|+++|.+|||||||+|+|++.. .......++.+.. .+.++. .+.++||||.-.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 78 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA--FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS--CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcc
Confidence 4789999999999999999999753 2344444444322 233332 478899999753
No 174
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.05 E-value=3.9e-06 Score=74.25 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=39.0
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE--EEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK--WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~--~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++.. ...+...++.+.. .+.++. .+.++||||.-
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 68 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNK--FPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQE 68 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC--CCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC--CCccCCCccceeEEEEEEECCEEEEEEEEECCCcH
Confidence 35789999999999999999999654 2334344443322 223332 57899999984
No 175
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.04 E-value=7.1e-06 Score=71.40 Aligned_cols=55 Identities=27% Similarity=0.290 Sum_probs=36.5
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeE--EEEEEeCC---eEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~--~~~~~~~~---~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|+|++... .....| |.+ ...+.++. .+.++||||.-
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~-~~~~~~--t~~~~~~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY-VQEESP--EGGRFKKEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC-CCCCCT--TCEEEEEEEEETTEEEEEEEEECSSSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCC--CcceEEEEEEECCEEEEEEEEECCCCh
Confidence 457999999999999999999997542 221222 222 12333332 45679999974
No 176
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.04 E-value=1.7e-05 Score=80.16 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=69.5
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHhHH----HHHHHHHHh-
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN----AWATYFAKQ- 175 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~----~w~~~~~~~- 175 (376)
.||| ..+.+.+...+..+|+++.|+|+..+......+...++ .+.|.++|+||+|+.+.+... +..+++...
T Consensus 80 tPGh-~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~ 158 (482)
T 1wb1_A 80 APGH-ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTH 158 (482)
T ss_dssp CSSH-HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCh-HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhc
Confidence 4787 45667777889999999999999875433222222222 367889999999999864332 233344443
Q ss_pred ---CceEEEeeCcCCcchhhhhHHHHHhhh
Q 017132 176 ---GTKVIFSNGQLGMGTMKLSRLAKALAS 202 (376)
Q Consensus 176 ---g~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (376)
+..++++|+++|.|+.+|.+.+.+...
T Consensus 159 ~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 159 NLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp SGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 357899999999999999888776543
No 177
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.03 E-value=3.6e-06 Score=73.81 Aligned_cols=59 Identities=17% Similarity=0.131 Sum_probs=36.6
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe----CCeEEEEeCCCCcC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF----GKDLEFLDSPGIIP 274 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~----~~~i~l~DTpG~i~ 274 (376)
..++|+++|.+|||||||+|.|.++...........|.......+ ...+.+.||||--.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 81 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMD 81 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHH
Confidence 347899999999999999999987432221111112222222122 24689999999743
No 178
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.03 E-value=5.4e-06 Score=84.68 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=47.0
Q ss_pred CcchhhhhHHHHHhhhhhhhhhhccCCCCCceEEeEeecCCCCcchhhhhhhhcccc-cccCCCCceeEEE------EEE
Q 017132 187 GMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMC-PAAPRPGVTRVLK------WVR 259 (376)
Q Consensus 187 g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~pNvGKSTLiN~L~~~~~~-~v~~~pg~T~~~~------~~~ 259 (376)
..|+..+.+.++++....... ........++|++||.||||||||+|+|++.... ...+..|.+.... .+.
T Consensus 13 ~~g~~~i~~yl~~l~~~~~~g--~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~ 90 (535)
T 3dpu_A 13 KQGKEAVRQYFQSIEEARSKG--EALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLE 90 (535)
T ss_dssp CSSHHHHHHHHHHHHHHHHTT--CCCBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGT
T ss_pred HhCHHHHHHHHHHHHHhhccC--cccccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEecccccccee
Confidence 346777777777765422111 1101234589999999999999999999975421 1122223322221 111
Q ss_pred e-----CCeEEEEeCCCC
Q 017132 260 F-----GKDLEFLDSPGI 272 (376)
Q Consensus 260 ~-----~~~i~l~DTpG~ 272 (376)
+ +..+.+.||||.
T Consensus 91 ~~~~~~~~~~~i~Dt~G~ 108 (535)
T 3dpu_A 91 NDDELKECLFHFWDFGGQ 108 (535)
T ss_dssp TCSTTTTCEEEEECCCSC
T ss_pred ecCCCceEEEEEEECCcH
Confidence 1 346899999994
No 179
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.03 E-value=4.7e-06 Score=78.80 Aligned_cols=56 Identities=20% Similarity=0.156 Sum_probs=40.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEeC-Ce--EEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRFG-KD--LEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~~-~~--i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|++++.. ......++|.+... +.++ .. +.++||||.-
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE 214 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSC--CCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCC--CCcccCCcccceeEEEEEECCEEEEEEEEeCCCch
Confidence 45789999999999999999999653 35556667766433 2332 33 4599999974
No 180
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.03 E-value=3.2e-06 Score=73.55 Aligned_cols=105 Identities=12% Similarity=0.055 Sum_probs=67.0
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-------cCCCeEEEEEcc
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNRE 157 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-------~~kp~ilVlNK~ 157 (376)
+..+.+|| +|.+ ..........+..+|+++.|+|+.++.+..+ ..+..++ .+.|.++|+||+
T Consensus 66 ~~~~~l~D---t~G~------~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 136 (190)
T 2h57_A 66 SLSFTVFD---MSGQ------GRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136 (190)
T ss_dssp SCEEEEEE---ECCS------TTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECT
T ss_pred CEEEEEEE---CCCC------HHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCc
Confidence 45677777 2222 1122223356789999999999987532211 2233332 357899999999
Q ss_pred CCCCHHhHHHHHHHHH-----HhCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 158 DMISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 158 DL~~~~~~~~w~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
|+........+.+.+. ..+..++.+|+++|.|+.++.+.+.+.
T Consensus 137 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 184 (190)
T 2h57_A 137 DLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQ 184 (190)
T ss_dssp TSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHH
Confidence 9986533333434332 234678899999999999887776544
No 181
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.02 E-value=4.5e-06 Score=74.19 Aligned_cols=56 Identities=21% Similarity=0.327 Sum_probs=36.8
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEE-EEEeCC---eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLK-WVRFGK---DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~-~~~~~~---~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++... .....|.+..+.. .+.++. .+.++||||.-
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 87 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCF-PENYVPTVFENYTASFEIDTQRIELSLWDTSGSP 87 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSG
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCccceeEEEEEEECCEEEEEEEEeCCCcH
Confidence 47899999999999999999997542 2222232222221 222322 47899999964
No 182
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.02 E-value=1e-06 Score=89.35 Aligned_cols=57 Identities=26% Similarity=0.406 Sum_probs=44.5
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i 273 (376)
++++|+++|.+|+|||||+|+|++.. ...+..+|+|.+.....+ +..+.++||||.-
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe 62 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVETENGMITFLDTPGHA 62 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEEECCEEEEEEECCCcH
Confidence 45679999999999999999999643 445666888887543333 4578999999974
No 183
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.02 E-value=5.5e-06 Score=71.78 Aligned_cols=58 Identities=10% Similarity=0.116 Sum_probs=36.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccC-------CCCceeEEEEEE-----eC---CeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAP-------RPGVTRVLKWVR-----FG---KDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~-------~pg~T~~~~~~~-----~~---~~i~l~DTpG~i 273 (376)
..++|+++|.+|||||||+|.|.+........ ....|....... ++ ..+.++||||.-
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV 85 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChH
Confidence 35789999999999999999998754222111 122343333221 11 147899999964
No 184
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.02 E-value=5.9e-06 Score=71.56 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=60.6
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcH----HHHHHh-------cCCCeEEEEEccCCCCHHhHHHHHHHHHHhCc-eEEE
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTHP----LMDQWL-------GNRKRILVLNREDMISMADRNAWATYFAKQGT-KVIF 181 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~~----~l~~~l-------~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~-~vi~ 181 (376)
....+..+|+++.|+|+..+....+. .+..++ .+.|+++|.||+|+.+........++....+. .++.
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLE 170 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEE
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEE
Confidence 33578999999999999854222111 222332 36799999999999765433444455556676 8899
Q ss_pred eeCcCCcchhhhhHHHHHh
Q 017132 182 SNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 182 iSa~~g~gi~~L~~~l~~l 200 (376)
+|+++|.|+.++.+.+.+.
T Consensus 171 ~Sa~~~~gv~~l~~~l~~~ 189 (198)
T 3t1o_A 171 AVATEGKGVFETLKEVSRL 189 (198)
T ss_dssp CBGGGTBTHHHHHHHHHHH
T ss_pred EecCCCcCHHHHHHHHHHH
Confidence 9999999999887665543
No 185
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.01 E-value=9.5e-06 Score=80.11 Aligned_cols=97 Identities=18% Similarity=0.231 Sum_probs=67.0
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-Cc---HHHHHHhcCCCeEEEEEccCCCCHHhH----HHHHHHHHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-TH---PLMDQWLGNRKRILVLNREDMISMADR----NAWATYFAK 174 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~-~~---~~l~~~l~~kp~ilVlNK~DL~~~~~~----~~w~~~~~~ 174 (376)
.||| ..+.+.+...+..+|+++.|+|+..+... .. ..+...+..+|.++|+||+|+.+.+.. +++.+++..
T Consensus 90 tPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 168 (410)
T 1kk1_A 90 APGH-EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEG 168 (410)
T ss_dssp CSSH-HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCCh-HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 4787 45566666778899999999999976411 11 112222345688999999999986532 233344433
Q ss_pred ---hCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 175 ---QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 175 ---~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
.+.+++++|+++|.|+..|.+.+.+.
T Consensus 169 ~~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 197 (410)
T 1kk1_A 169 TVAENAPIIPISALHGANIDVLVKAIEDF 197 (410)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred cCcCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 24678999999999999988877653
No 186
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.01 E-value=9.4e-07 Score=88.77 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=40.3
Q ss_pred ceEEeEeecCCCCcchhhhhhhhccc-c-----------------------------cccCCCCceeEEEEEEe---CCe
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRM-C-----------------------------PAAPRPGVTRVLKWVRF---GKD 263 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~-~-----------------------------~v~~~pg~T~~~~~~~~---~~~ 263 (376)
.++|+++|.+|+|||||+|+|++... . ..+...|+|.+.....+ +..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 47899999999999999999986410 0 01113688877543333 346
Q ss_pred EEEEeCCCCc
Q 017132 264 LEFLDSPGII 273 (376)
Q Consensus 264 i~l~DTpG~i 273 (376)
+.++||||.-
T Consensus 87 ~~iiDtPGh~ 96 (458)
T 1f60_A 87 VTVIDAPGHR 96 (458)
T ss_dssp EEEEECCCCT
T ss_pred EEEEECCCcH
Confidence 8999999963
No 187
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.00 E-value=2.9e-06 Score=81.46 Aligned_cols=53 Identities=21% Similarity=0.351 Sum_probs=36.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-CCeEEEEeCCCC
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGI 272 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-~~~i~l~DTpG~ 272 (376)
..++|+|+|.+|||||||+|+|++... +...| |.+... +.. +..+.++||||-
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~--~~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~ 219 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKNISFTVWDVGGQ 219 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC--EEEEE--ETTEEEEEEEETTEEEEEEECC--
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC--CCccc--ccceEEEEEecCcEEEEEEECCCC
Confidence 346899999999999999999997653 23333 443332 222 346899999995
No 188
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.99 E-value=8.4e-06 Score=71.61 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=37.7
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCC--ceeEEEEEEeCC---eEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPG--VTRVLKWVRFGK---DLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg--~T~~~~~~~~~~---~i~l~DTpG~i~ 274 (376)
.++|+++|.+|||||||+|+|++.... ....|. ++.....+.++. .+.+.||||.-.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 66 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 66 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCC-C---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCchh
Confidence 468999999999999999999986422 222233 333333444443 356799999753
No 189
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.98 E-value=2.9e-06 Score=71.90 Aligned_cols=86 Identities=14% Similarity=0.069 Sum_probs=59.6
Q ss_pred HHHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCCCCHHhHHHHHHHHH-----HhCceEEEe
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFS 182 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~--~~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~w~~~~~-----~~g~~vi~i 182 (376)
...+..+|+++.|+|+..+.+.. ...+..++ .+.|.++|+||+|+.+......+.+.+. ..+..++.+
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT 148 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEEC
Confidence 35678999999999998875432 22233333 3678999999999987543334444332 224568899
Q ss_pred eCcCCcchhhhhHHHHHh
Q 017132 183 NGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 183 Sa~~g~gi~~L~~~l~~l 200 (376)
|++.|.|+.++.+.+.+.
T Consensus 149 Sa~~~~gi~~l~~~l~~~ 166 (171)
T 1upt_A 149 SATKGTGLDEAMEWLVET 166 (171)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHH
Confidence 999999999887766543
No 190
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.98 E-value=1.7e-05 Score=80.07 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=63.2
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcchhh
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMK 192 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi~~ 192 (376)
...+.++++|++|.|+|+..+.+..+.++.+.+.++|+++|+||+|+.+........+++ ..+..++++|+++|.|+.+
T Consensus 316 ~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~e 394 (482)
T 1xzp_A 316 RTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLEK 394 (482)
T ss_dssp HHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHHH
T ss_pred HHHHHhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHHH
Confidence 345678999999999999887665555555556688999999999997542222222222 2235789999999999999
Q ss_pred hhHHHHHh
Q 017132 193 LSRLAKAL 200 (376)
Q Consensus 193 L~~~l~~l 200 (376)
|.+.+.+.
T Consensus 395 L~~~l~~~ 402 (482)
T 1xzp_A 395 LEESIYRE 402 (482)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776553
No 191
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.98 E-value=8.2e-06 Score=70.36 Aligned_cols=106 Identities=13% Similarity=0.072 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL 159 (376)
...+.+|| + ||+ ..........+..+|+++.|+|+..+.+..+ ..+..+. .+.|.++|+||+|+
T Consensus 69 ~~~~~l~D---t-----~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (195)
T 3bc1_A 69 RIHLQLWD---T-----AGL-ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDL 139 (195)
T ss_dssp EEEEEEEE---E-----CCS-GGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTC
T ss_pred EEEEEEEe---C-----CCc-HHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 34567777 2 333 2333445567899999999999987543322 1122222 36799999999999
Q ss_pred CCHHh--HHHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHHhh
Q 017132 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 160 ~~~~~--~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
.+... .....++....+..++.+|++.|.|+.++.+.+.+..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 140 EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp GGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 75321 1223334445577899999999999999877765543
No 192
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.98 E-value=9.9e-06 Score=67.98 Aligned_cols=103 Identities=9% Similarity=-0.075 Sum_probs=66.2
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc-----HHHHHHhc--CCCeEEEEEccCCC
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMI 160 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~-----~~l~~~l~--~kp~ilVlNK~DL~ 160 (376)
..+.+|| + ||+. .........+..+|.++.|+|+.++.+... .++..... +.|.++|+||+|+.
T Consensus 52 ~~~~l~D---~-----~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 122 (168)
T 1u8z_A 52 VQIDILD---T-----AGQE-DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122 (168)
T ss_dssp EEEEEEE---C-----CC----CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred EEEEEEE---C-----CCcc-hhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence 4566777 2 4432 333444567889999999999986543211 11222222 68999999999997
Q ss_pred CHHh--HHHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHH
Q 017132 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 161 ~~~~--~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
+..+ ......+....+..++.+|+++|.|+.++.+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 163 (168)
T 1u8z_A 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163 (168)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHH
Confidence 5422 22333444556778999999999999988766543
No 193
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.98 E-value=1.4e-05 Score=69.43 Aligned_cols=105 Identities=8% Similarity=0.020 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL 159 (376)
+..+.+|| + ||+ .+........+..+|+++.|+|+.++.+... ..+..++ .+.|+++|+||+|+
T Consensus 66 ~~~~~l~D---t-----~G~-~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 136 (188)
T 1zd9_A 66 NVTIKLWD---I-----GGQ-PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 136 (188)
T ss_dssp TEEEEEEE---E-----CCS-HHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTS
T ss_pred CEEEEEEE---C-----CCC-HhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCC
Confidence 45566777 2 443 3344445567899999999999987543221 2233332 35789999999999
Q ss_pred CCHHhHHHHHHHHH-----HhCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 160 ~~~~~~~~w~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
.+......+.+.+. ..+..++.+|+++|.|+.++.+.+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 182 (188)
T 1zd9_A 137 PGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 182 (188)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 86533333433332 123467889999999999887766543
No 194
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.97 E-value=2e-06 Score=86.85 Aligned_cols=56 Identities=23% Similarity=0.453 Sum_probs=34.6
Q ss_pred ceEEeEeecCCCCcchhhhhhhhccc------ccccCCCCceeEEEE--EEe-CCeEEEEeCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRM------CPAAPRPGVTRVLKW--VRF-GKDLEFLDSPGI 272 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~------~~v~~~pg~T~~~~~--~~~-~~~i~l~DTpG~ 272 (376)
.++|+++|.+|+|||||+|+|++... ...+..+|+|.+... +.. +..+.++||||.
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh 83 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH 83 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh
Confidence 47899999999999999999997551 334567889988643 333 347899999997
No 195
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.21 E-value=1e-06 Score=77.69 Aligned_cols=55 Identities=24% Similarity=0.206 Sum_probs=37.1
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEE--EEe-CC--eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKW--VRF-GK--DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~--~~~-~~--~i~l~DTpG~i 273 (376)
.++|+++|.+|||||||+|+|++.. .......+|.+... +.. +. .+.++||||.-
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 89 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNA--FPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 89 (204)
Confidence 4789999999999999999998643 23333444444322 122 22 35589999974
No 196
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.96 E-value=4.3e-06 Score=82.30 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=41.8
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccc---------------cccCCCCceeEEEEEEe---CCeEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMC---------------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~---------------~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i 273 (376)
.++|+++|.+|+|||||+|+|++.... ..+...|.|.+.....+ +..+.++||||..
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~ 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH
Confidence 468999999999999999999863100 01124678888655444 3679999999974
No 197
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.96 E-value=4.5e-06 Score=80.43 Aligned_cols=23 Identities=52% Similarity=0.801 Sum_probs=20.8
Q ss_pred ceEEeEeecCCCCcchhhhhhhh
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~ 239 (376)
...++|+|.||||||||+|.|++
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999984
No 198
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.96 E-value=2.2e-05 Score=69.67 Aligned_cols=103 Identities=15% Similarity=0.150 Sum_probs=68.7
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh---------cCCCeEEEEEcc
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL---------GNRKRILVLNRE 157 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l---------~~kp~ilVlNK~ 157 (376)
...+.+|| .||+ ..........+..+|+++.|+|+..+.+.. .+..++ .+.|+++|+||+
T Consensus 83 ~~~l~l~D--------t~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~~--~~~~~l~~i~~~~~~~~~piilV~NK~ 151 (217)
T 2f7s_A 83 KVHLQLWD--------TAGQ-ERFRSLTTAFFRDAMGFLLMFDLTSQQSFL--NVRNWMSQLQANAYCENPDIVLIGNKA 151 (217)
T ss_dssp EEEEEEEE--------EESH-HHHHHHHHHHHTTCCEEEEEEETTCHHHHH--HHHHHHHTCCCCCTTTCCEEEEEEECT
T ss_pred eEEEEEEE--------CCCc-HhHHhHHHHHhcCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCcCCCCEEEEEECC
Confidence 34566776 3564 445555567899999999999987653321 222232 246899999999
Q ss_pred CCCCHHh--HHHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 158 DMISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 158 DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
|+.+... ......+....+..++.+|++.|.|+.++.+.+.+.
T Consensus 152 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 196 (217)
T 2f7s_A 152 DLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 196 (217)
T ss_dssp TCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 9975322 122223334557789999999999999987766544
No 199
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.95 E-value=4.6e-06 Score=83.07 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=22.3
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
.++|+++|.+|+|||||+|+|++..
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhc
Confidence 4789999999999999999998653
No 200
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.94 E-value=7.4e-06 Score=70.31 Aligned_cols=85 Identities=11% Similarity=-0.106 Sum_probs=55.1
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL 186 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l--~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~ 186 (376)
..+..+|.++.|+|..++.+.... ++.... .+.|+++|.||+|+..... ......+....+..++.+|+++
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (181)
T 3t5g_A 73 TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKE 152 (181)
T ss_dssp GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTS
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCC
Confidence 456789999999999865332211 111121 2579999999999964321 1222233445577889999999
Q ss_pred CcchhhhhHHHHHh
Q 017132 187 GMGTMKLSRLAKAL 200 (376)
Q Consensus 187 g~gi~~L~~~l~~l 200 (376)
|.|+.++.+.+.+.
T Consensus 153 ~~~v~~l~~~l~~~ 166 (181)
T 3t5g_A 153 NQTAVDVFRRIILE 166 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99998886665443
No 201
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.94 E-value=3e-06 Score=82.80 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=37.4
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
+|+++|.+|+|||||+|+|+ ..|+|.+.....+ +..+.++||||...
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~ 72 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPK 72 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTT
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHH
Confidence 69999999999999999998 3466666544443 45799999999853
No 202
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.94 E-value=2.7e-06 Score=83.88 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=41.8
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcc--cc---c-----c------cCCCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRR--MC---P-----A------APRPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~--~~---~-----v------~~~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
.++|+++|.+|+|||||+|+|++.. .. . . +...|+|.+.....+ +..+.++||||...
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 4789999999999999999998731 00 0 0 114677877554443 46799999999853
No 203
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.94 E-value=1e-05 Score=70.84 Aligned_cols=57 Identities=16% Similarity=0.332 Sum_probs=38.7
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeE--EEEEEeCC-e--EEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFGK-D--LEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~--~~~~~~~~-~--i~l~DTpG~i~ 274 (376)
.++|+++|.+|||||||+|+|++... .....|.++.+ ...+.++. . +.+.||+|.-.
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~-~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-CCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 47899999999999999999997642 22333443333 33444433 3 45699999853
No 204
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.93 E-value=6.4e-06 Score=71.12 Aligned_cols=105 Identities=12% Similarity=0.082 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL 159 (376)
+..+.+|| + ||+ .+........+..+|+++.|+|+.++.+..+ ..+..++ .+.|.++|+||+|+
T Consensus 61 ~~~~~~~D---t-----~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 131 (186)
T 1ksh_A 61 GFKLNIWD---V-----GGQ-KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131 (186)
T ss_dssp TEEEEEEE---E-----CCS-HHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred CEEEEEEE---C-----CCC-HhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccC
Confidence 45566776 2 443 2333334466889999999999987643222 1233332 25789999999999
Q ss_pred CCHHhHHHHHHHHH-----HhCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 160 ~~~~~~~~w~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
.+........+.+. ..+..++.+|+++|.|+.++.+.+.+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 177 (186)
T 1ksh_A 132 PGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDD 177 (186)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHH
Confidence 87544333333332 234578889999999999887766544
No 205
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.93 E-value=1.4e-06 Score=89.08 Aligned_cols=57 Identities=23% Similarity=0.390 Sum_probs=38.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccc---------------cc------cCCCCceeEEEEEEe---CCeEEEEeCCCCc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMC---------------PA------APRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~---------------~v------~~~pg~T~~~~~~~~---~~~i~l~DTpG~i 273 (376)
.+|+|+|.+|||||||+|+|+..... .+ ...+|+|.+.....+ +..+.|+||||..
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 57999999999999999999632111 01 113566665433222 4578999999986
Q ss_pred C
Q 017132 274 P 274 (376)
Q Consensus 274 ~ 274 (376)
.
T Consensus 94 d 94 (528)
T 3tr5_A 94 D 94 (528)
T ss_dssp T
T ss_pred h
Confidence 4
No 206
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.93 E-value=4.3e-06 Score=82.62 Aligned_cols=41 Identities=27% Similarity=0.341 Sum_probs=30.5
Q ss_pred CceEEeEeecCCCCcchhhhhhhhccc--ccccCCCCceeEEE
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVLK 256 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~--~~v~~~pg~T~~~~ 256 (376)
..++|+++|.+|+|||||+|+|++... ...+..+|+|.+..
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~ 51 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG 51 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEe
Confidence 357899999999999999999996432 22334578887643
No 207
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.93 E-value=5e-06 Score=80.89 Aligned_cols=58 Identities=29% Similarity=0.370 Sum_probs=30.8
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCC------CceeEE--EEEEe--C---CeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP------GVTRVL--KWVRF--G---KDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p------g~T~~~--~~~~~--~---~~i~l~DTpG~i 273 (376)
..++|++||.+|||||||+|+|.+......+..+ ..|... ....+ + ..+.++||||+-
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence 4578999999999999999999875433322221 223332 22222 1 157899999993
No 208
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.92 E-value=7.6e-06 Score=69.95 Aligned_cols=104 Identities=11% Similarity=0.082 Sum_probs=63.5
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHH---h-cCCCeEEEEEccCCCC
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L-GNRKRILVLNREDMIS 161 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~---l-~~kp~ilVlNK~DL~~ 161 (376)
..+.+|| + ||+ ..........+..+|+++.|+|+..+.+..+ ..+..+ . .+.|.++|+||+|+.+
T Consensus 60 ~~~~~~D---t-----~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 60 VKLQMWD---T-----AGQ-ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp EEEEEEE---C-----CCC---------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred EEEEEEe---C-----CCc-HHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 4566676 2 343 2233334456899999999999987543222 111111 1 3678999999999986
Q ss_pred HHh--HHHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 162 ~~~--~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
... ...........+..++.+|+++|.|+.++.+.+.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 171 (180)
T 2g6b_A 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKE 171 (180)
T ss_dssp CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 421 122233344557789999999999999887766543
No 209
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.92 E-value=1.1e-05 Score=79.64 Aligned_cols=97 Identities=21% Similarity=0.235 Sum_probs=59.7
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC----cHHHHHHhcCCCeEEEEEccCCCCHHh----HHHHHHHHHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT----HPLMDQWLGNRKRILVLNREDMISMAD----RNAWATYFAK 174 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~----~~~l~~~l~~kp~ilVlNK~DL~~~~~----~~~w~~~~~~ 174 (376)
.||| ..+.+.+...+..+|+++.|+|+..+.... ...+...+..+|.++|+||+|+.+.+. .++..+++.+
T Consensus 88 tPGh-~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~ 166 (408)
T 1s0u_A 88 SPGH-ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKG 166 (408)
T ss_dssp CSSH-HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTT
T ss_pred CCCH-HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhh
Confidence 4787 445556556678889999999999764111 111222233568999999999987532 2333344433
Q ss_pred ---hCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 175 ---QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 175 ---~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
.+..++++|+++|.|+.+|.+.+.+.
T Consensus 167 ~~~~~~~~i~vSA~~g~gi~~L~~~l~~~ 195 (408)
T 1s0u_A 167 TIAENAPIIPISAHHEANIDVLLKAIQDF 195 (408)
T ss_dssp STTTTCCEEEC------CHHHHHHHHHHH
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence 24678999999999999988877653
No 210
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.92 E-value=1.1e-05 Score=69.87 Aligned_cols=105 Identities=10% Similarity=0.111 Sum_probs=66.7
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL 159 (376)
+..+.+|| .||+ .+........+..+|+++.|+|+.++.+..+ ..+..+. .+.|.++|+||+|+
T Consensus 59 ~~~~~i~D--------t~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 59 NTRFLMWD--------IGGQ-ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129 (187)
T ss_dssp TEEEEEEE--------CCC-----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTS
T ss_pred CEEEEEEE--------CCCC-HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCC
Confidence 45667777 2443 2223333466899999999999988743221 2233332 35789999999999
Q ss_pred CCHHhHHHHHHHHH-----HhCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 160 ~~~~~~~~w~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
.+.....+..+.+. ..+..++.+|+++|.|+.++.+.+.+.
T Consensus 130 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 175 (187)
T 1zj6_A 130 KECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 175 (187)
T ss_dssp TTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHH
Confidence 86432333333332 234578899999999999887776544
No 211
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.91 E-value=1.3e-05 Score=67.06 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=62.8
Q ss_pred HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHHHhCc-eEEEeeCcC
Q 017132 110 TEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAKQGT-KVIFSNGQL 186 (376)
Q Consensus 110 ~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~-~vi~iSa~~ 186 (376)
..+.....+..+|+++.|+|+..+.......+..++. +.|.++|.||+|+.+..+ . ...+.+.+. .++.+|+++
T Consensus 69 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--~-~~~~~~~~~~~~~~~Sa~~ 145 (161)
T 2dyk_A 69 IQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHEL--Y-LGPLYGLGFGDPIPTSSEH 145 (161)
T ss_dssp HHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGG--G-CGGGGGGSSCSCEECBTTT
T ss_pred HHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchH--h-HHHHHhCCCCCeEEEeccc
Confidence 3444556789999999999999876655555555553 789999999999986532 1 112224454 688999999
Q ss_pred CcchhhhhHHHHH
Q 017132 187 GMGTMKLSRLAKA 199 (376)
Q Consensus 187 g~gi~~L~~~l~~ 199 (376)
|.|+.++.+.+.+
T Consensus 146 ~~gv~~l~~~l~~ 158 (161)
T 2dyk_A 146 ARGLEELLEAIWE 158 (161)
T ss_dssp TBSHHHHHHHHHH
T ss_pred CCChHHHHHHHHH
Confidence 9999888766543
No 212
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.91 E-value=4.6e-06 Score=80.44 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=26.0
Q ss_pred CceEEeEeecCCCCcchhhhhhhh------cccccccCCCCcee
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLK------RRMCPAAPRPGVTR 253 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~------~~~~~v~~~pg~T~ 253 (376)
....|+++|+||+|||||+|.|++ .+...++.-|++|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~ 98 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV 98 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC
Confidence 356799999999999999999974 23333444555543
No 213
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.89 E-value=8.9e-06 Score=71.17 Aligned_cols=105 Identities=12% Similarity=0.075 Sum_probs=65.5
Q ss_pred cCCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCC--cHHHHHHhc-----CCCeEEEEEccC
Q 017132 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNRED 158 (376)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~--~~~l~~~l~-----~kp~ilVlNK~D 158 (376)
.+..+.+|| .||+ ..........+..+|+++.|+|+.++.+.. ...+..++. +.|.++|.||+|
T Consensus 71 ~~~~~~i~D--------t~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~D 141 (192)
T 2b6h_A 71 KNICFTVWD--------VGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQD 141 (192)
T ss_dssp TTEEEEEEE--------CC------CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTT
T ss_pred CCEEEEEEE--------CCCC-HhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCC
Confidence 345667777 2443 223333446789999999999998764321 122333332 578999999999
Q ss_pred CCCHHhHHHHHHHHHH-----hCceEEEeeCcCCcchhhhhHHHHH
Q 017132 159 MISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 159 L~~~~~~~~w~~~~~~-----~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
+.+....+.+.+.+.. .+..++.+|+++|.|+.++.+.+.+
T Consensus 142 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 187 (192)
T 2b6h_A 142 MPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSH 187 (192)
T ss_dssp STTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHH
Confidence 9765333344333321 2346888999999999988776543
No 214
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.89 E-value=1.9e-05 Score=79.62 Aligned_cols=83 Identities=20% Similarity=0.100 Sum_probs=60.8
Q ss_pred HHhhhcCeEEEEEecCCCCCC----CcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHh-CceEEEeeCcCCcch
Q 017132 116 DQLKLMDVVIEVRDARIPLST----THPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-GTKVIFSNGQLGMGT 190 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~----~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~-g~~vi~iSa~~g~gi 190 (376)
..+..+|+|+.|+|+..+... ...++...+.++|.++|+||+|+.+...... +.+.+. ...++.+|+++|.|+
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i~vSAktg~GI 385 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALI--RAIADGTGTEVIGISALNGDGI 385 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEEECBTTTTBSH
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhH--HHHHhcCCCceEEEEECCCCCH
Confidence 357899999999999987765 2333434445789999999999987654322 223332 367899999999999
Q ss_pred hhhhHHHHHh
Q 017132 191 MKLSRLAKAL 200 (376)
Q Consensus 191 ~~L~~~l~~l 200 (376)
.+|.+.+.+.
T Consensus 386 ~eL~~~i~~~ 395 (476)
T 3gee_A 386 DTLKQHMGDL 395 (476)
T ss_dssp HHHHHHHTHH
T ss_pred HHHHHHHHHH
Confidence 9987776544
No 215
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.88 E-value=1.3e-05 Score=68.66 Aligned_cols=88 Identities=9% Similarity=-0.109 Sum_probs=60.4
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCc-----HHHHHHhc--CCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEee
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTH-----PLMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSN 183 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~-----~~l~~~l~--~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iS 183 (376)
.....+..+|.++.|+|+.++.+... .++..... +.|.++|+||+|+.+... .....++....+..++++|
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (187)
T 2a9k_A 82 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS 161 (187)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeC
Confidence 34466889999999999986543211 11222222 689999999999975421 2334445556677889999
Q ss_pred CcCCcchhhhhHHHHHh
Q 017132 184 GQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 184 a~~g~gi~~L~~~l~~l 200 (376)
+++|.|+.++.+.+.+.
T Consensus 162 a~~~~gi~~l~~~l~~~ 178 (187)
T 2a9k_A 162 AKTRANVDKVFFDLMRE 178 (187)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999887766543
No 216
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.86 E-value=1.4e-05 Score=70.49 Aligned_cols=88 Identities=15% Similarity=0.012 Sum_probs=57.8
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh----cCCCeEEEEEccCCCCHHhH-HHHHHHHHHhCceEEEeeCcC
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMADR-NAWATYFAKQGTKVIFSNGQL 186 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l----~~kp~ilVlNK~DL~~~~~~-~~w~~~~~~~g~~vi~iSa~~ 186 (376)
....+..+|+++.|+|+..+.+... ..+..+. ...|.++|+||+|+...... .....+....+..++.+|++.
T Consensus 86 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (213)
T 3cph_A 86 TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKN 165 (213)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 3466889999999999876543211 1111111 15789999999999543211 122223344567899999999
Q ss_pred CcchhhhhHHHHHhh
Q 017132 187 GMGTMKLSRLAKALA 201 (376)
Q Consensus 187 g~gi~~L~~~l~~l~ 201 (376)
|.|+.++.+.+.+..
T Consensus 166 ~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 166 DDNVNEIFFTLAKLI 180 (213)
T ss_dssp TBSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999877765543
No 217
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.86 E-value=4.1e-05 Score=76.36 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-------CcHHHHHHh--cCCC-eEEEEEccCCCCH----Hh----H
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------THPLMDQWL--GNRK-RILVLNREDMISM----AD----R 165 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~-------~~~~l~~~l--~~kp-~ilVlNK~DL~~~----~~----~ 165 (376)
||| ..+.+.+...+..+|++|.|+|++.+..+ ...+...+. .+.| .++|+||+|+.+. .. .
T Consensus 103 PGh-~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~ 181 (439)
T 3j2k_7 103 PGH-KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECK 181 (439)
T ss_pred CCh-HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHH
Confidence 787 56677777788999999999999986531 111111111 2455 8999999999642 11 1
Q ss_pred HHHHHHHHHhC------ceEEEeeCcCCcchhhhhH
Q 017132 166 NAWATYFAKQG------TKVIFSNGQLGMGTMKLSR 195 (376)
Q Consensus 166 ~~w~~~~~~~g------~~vi~iSa~~g~gi~~L~~ 195 (376)
.+...++.+.| ..++++||++|.|+.++.+
T Consensus 182 ~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 182 EKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 22223333434 3588999999999988543
No 218
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.86 E-value=2.6e-05 Score=77.61 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHH---HHHhcCCCeEEEEEccCCCC--HHh----HHHHHHHHHH
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLM---DQWLGNRKRILVLNREDMIS--MAD----RNAWATYFAK 174 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l---~~~l~~kp~ilVlNK~DL~~--~~~----~~~w~~~~~~ 174 (376)
|||. .+.+.+...+..+|+++.|+|++.+......+. ...+..++.++|+||+|+.+ ++. ...+.+++..
T Consensus 112 pGh~-~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~ 190 (434)
T 1zun_B 112 PGHE-QYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEG 190 (434)
T ss_dssp CCSG-GGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred CChH-HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHH
Confidence 6663 345556667899999999999998653322221 12222346899999999986 222 2334444555
Q ss_pred hC-----ceEEEeeCcCCcchhh
Q 017132 175 QG-----TKVIFSNGQLGMGTMK 192 (376)
Q Consensus 175 ~g-----~~vi~iSa~~g~gi~~ 192 (376)
.+ ..++++|+++|.|+.+
T Consensus 191 ~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 191 IAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp TTCCCSEEEEEECCTTTCTTTSS
T ss_pred hCCCccCceEEEEeccCCCCccc
Confidence 55 5688899999999886
No 219
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.85 E-value=1.4e-05 Score=67.95 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHH---HHh-cCCCeEEEEEccCCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMD---QWL-GNRKRILVLNREDMI 160 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~--~l~---~~l-~~kp~ilVlNK~DL~ 160 (376)
...+.+|| .||+ ..........+..+|+++.|+|+..+.+..+. .+. ... .+.|.++|+||+|+.
T Consensus 63 ~~~~~l~D--------t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 133 (179)
T 1z0f_A 63 KIKLQIWD--------TAGQ-ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE 133 (179)
T ss_dssp EEEEEEEE--------CTTG-GGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred EEEEEEEE--------CCCC-hHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence 34567777 2443 22334455678999999999999876432221 111 111 257899999999997
Q ss_pred CHHh--HHHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHH
Q 017132 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 161 ~~~~--~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
+... .....++....+..++.+|+++|.|+.++.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 174 (179)
T 1z0f_A 134 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 174 (179)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 5322 22333444556788999999999999888766543
No 220
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.84 E-value=1.1e-05 Score=69.06 Aligned_cols=88 Identities=13% Similarity=0.022 Sum_probs=59.7
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeC
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG 184 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa 184 (376)
.....+..+|+++.|+|+..+.+... ..+..+. .+.|+++|+||+|+.+... .....++....+..++.+|+
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSA 156 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCS
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEEC
Confidence 34466889999999999876543211 1111221 1567999999999975432 23334444556778999999
Q ss_pred cCCcchhhhhHHHHHh
Q 017132 185 QLGMGTMKLSRLAKAL 200 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~l 200 (376)
+.|.|+.++.+.+.+.
T Consensus 157 ~~g~gi~~l~~~l~~~ 172 (181)
T 2efe_B 157 KTATNVKEIFYEIARR 172 (181)
T ss_dssp SSCTTHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999887776543
No 221
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.82 E-value=5.9e-06 Score=82.34 Aligned_cols=57 Identities=32% Similarity=0.451 Sum_probs=34.5
Q ss_pred ceEEeEeecCCCCcchhhhhhhhccc-c-----------------------------cccCCCCceeEEEEEEe---CCe
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRM-C-----------------------------PAAPRPGVTRVLKWVRF---GKD 263 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~-~-----------------------------~v~~~pg~T~~~~~~~~---~~~ 263 (376)
.++|+++|.+|+|||||+|+|++... . ..+...|+|.+.....+ +..
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~ 85 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF 85 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeE
Confidence 46899999999999999999986411 0 01125788988654433 457
Q ss_pred EEEEeCCCCc
Q 017132 264 LEFLDSPGII 273 (376)
Q Consensus 264 i~l~DTpG~i 273 (376)
+.++||||..
T Consensus 86 ~~iiDtpG~~ 95 (435)
T 1jny_A 86 FTIIDAPGHR 95 (435)
T ss_dssp EEECCCSSST
T ss_pred EEEEECCCcH
Confidence 9999999975
No 222
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.81 E-value=6.4e-06 Score=81.19 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.6
Q ss_pred CceEEeEeecCCCCcchhhhhhhhc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
..++|+++|.+|+|||||+|+|++.
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCc
Confidence 4578999999999999999999974
No 223
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.81 E-value=3.9e-05 Score=66.29 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=66.1
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL 159 (376)
+..+.+|| +|.| ..........+..+|+++.|+|+.++.+..+ ..+..++ .+.|+++|.||+|+
T Consensus 59 ~~~l~i~D---t~G~------~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 129 (181)
T 1fzq_A 59 GFKLNVWD---IGGQ------RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDL 129 (181)
T ss_dssp TEEEEEEE---CSSC------GGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTS
T ss_pred CEEEEEEE---CCCC------HHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCc
Confidence 45566777 2322 2223334567899999999999987543221 2233332 25799999999999
Q ss_pred CCHHhHHHHHHHHH-----HhCceEEEeeCcCCcchhhhhHHHHH
Q 017132 160 ISMADRNAWATYFA-----KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 160 ~~~~~~~~w~~~~~-----~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
.+........+.+. ..+..++.+||++|.|+.++.+.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 174 (181)
T 1fzq_A 130 LTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCK 174 (181)
T ss_dssp TTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred ccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHH
Confidence 86543333333321 12346788999999999988776644
No 224
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.79 E-value=1.2e-05 Score=68.47 Aligned_cols=88 Identities=16% Similarity=0.092 Sum_probs=59.6
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeC
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG 184 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa 184 (376)
.....+..+|+++.|+|+..+.+... ..+..+. .+.|.++|+||+|+.+.+. ...........+..++.+|+
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSA 158 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBT
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeC
Confidence 34466889999999999976533211 1122221 2578999999999975432 23333445556788999999
Q ss_pred cCCcchhhhhHHHHHh
Q 017132 185 QLGMGTMKLSRLAKAL 200 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~l 200 (376)
+.|.|+.++.+.+.+.
T Consensus 159 ~~~~~i~~l~~~l~~~ 174 (179)
T 2y8e_A 159 KAGYNVKQLFRRVAAA 174 (179)
T ss_dssp TTTBSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999887766543
No 225
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.78 E-value=1.2e-05 Score=79.37 Aligned_cols=39 Identities=31% Similarity=0.378 Sum_probs=27.0
Q ss_pred ceEEeEeecCCCCcchhhhhhhhccc--ccccCCCCceeEE
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRM--CPAAPRPGVTRVL 255 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~--~~v~~~pg~T~~~ 255 (376)
.++|+++|.+|+|||||+|+|++... ...+..+|.|.+.
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~ 48 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRL 48 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEe
Confidence 57899999999999999999996432 2233457888764
No 226
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.78 E-value=1.8e-05 Score=66.34 Aligned_cols=86 Identities=15% Similarity=-0.025 Sum_probs=57.8
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCc--HH---HHHHh--cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeC
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG 184 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~--~~---l~~~l--~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa 184 (376)
....+..+|.++.|+|..++.+..+ .. +.... .+.|.++|+||+|+.+..+ .........+.+..++.+|+
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 147 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSA 147 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECT
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecC
Confidence 3456889999999999987543211 11 22222 2689999999999975432 12222333445778999999
Q ss_pred cCCcchhhhhHHHHH
Q 017132 185 QLGMGTMKLSRLAKA 199 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~ 199 (376)
++|.|+.++.+.+.+
T Consensus 148 ~~~~gi~~l~~~l~~ 162 (167)
T 1kao_A 148 KSKTMVDELFAEIVR 162 (167)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 999999988776644
No 227
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.77 E-value=2.8e-05 Score=78.42 Aligned_cols=97 Identities=19% Similarity=0.184 Sum_probs=61.5
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC----CcHHHH---H---HhcCCCeEEEEEc
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMD---Q---WLGNRKRILVLNR 156 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~----~~~~l~---~---~l~~kp~ilVlNK 156 (376)
+..+.+|| -||| ..+.+.+...+..+|++|.|+|+..+... ...+.. . .+..+|.++|+||
T Consensus 110 ~~~~~iiD--------TPG~-~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK 180 (483)
T 3p26_A 110 RANFTIVD--------APGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNK 180 (483)
T ss_dssp SCEEEEEC--------CCCC-GGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CceEEEEE--------CCCc-HHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEEC
Confidence 44566666 2666 45667777789999999999999886332 112221 1 2234679999999
Q ss_pred cCCCC--HHhHH----HHHHHHHHhC-----ceEEEeeCcCCcchhh
Q 017132 157 EDMIS--MADRN----AWATYFAKQG-----TKVIFSNGQLGMGTMK 192 (376)
Q Consensus 157 ~DL~~--~~~~~----~w~~~~~~~g-----~~vi~iSa~~g~gi~~ 192 (376)
+|+.+ ....+ ...+++...| ..++++||++|.|+.+
T Consensus 181 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 181 MDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred cCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99987 22212 2223333333 4678999999999875
No 228
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.77 E-value=3.5e-05 Score=66.14 Aligned_cols=88 Identities=13% Similarity=-0.044 Sum_probs=58.0
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHH---h--cCCCeEEEEEccCCCCHHhHHH-HHHHHHHhCceEEEeeC
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L--GNRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNG 184 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~---l--~~kp~ilVlNK~DL~~~~~~~~-w~~~~~~~g~~vi~iSa 184 (376)
.....+..+|.++.|+|..++.+... ..+..+ . .+.|.++|+||+|+.+...... ........+..++.+|+
T Consensus 68 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 147 (189)
T 4dsu_A 68 MRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSA 147 (189)
T ss_dssp THHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeC
Confidence 33456788999999999886533211 111111 1 2579999999999985432222 22233445678999999
Q ss_pred cCCcchhhhhHHHHHh
Q 017132 185 QLGMGTMKLSRLAKAL 200 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~l 200 (376)
++|.|+.++.+.+.+.
T Consensus 148 ~~g~gi~~l~~~l~~~ 163 (189)
T 4dsu_A 148 KTRQGVDDAFYTLVRE 163 (189)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999887665543
No 229
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.77 E-value=2.1e-05 Score=75.93 Aligned_cols=90 Identities=17% Similarity=0.151 Sum_probs=58.7
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCC-----CCCcH---HHHHH---hcCCCeEEEEEccCCCCHHh-HHHHHHHHHHhCce
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPL-----STTHP---LMDQW---LGNRKRILVLNREDMISMAD-RNAWATYFAKQGTK 178 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~-----~~~~~---~l~~~---l~~kp~ilVlNK~DL~~~~~-~~~w~~~~~~~g~~ 178 (376)
...+.+.++++|++++|+|+.... ..... ++..+ +..+|.++|+||+|+.+..+ ...+.+.+. ....
T Consensus 227 ~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~-~~~~ 305 (342)
T 1lnz_A 227 GHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT-DDYP 305 (342)
T ss_dssp HHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC-SCCC
T ss_pred HHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh-cCCC
Confidence 344556688999999999996522 11111 12221 13689999999999987643 223322221 1146
Q ss_pred EEEeeCcCCcchhhhhHHHHHhh
Q 017132 179 VIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
++.+|++++.|+.+|.+.+.+..
T Consensus 306 v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 306 VFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp BCCCSSCCSSTTHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHHH
Confidence 78899999999999887776554
No 230
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.77 E-value=3.8e-05 Score=65.06 Aligned_cols=85 Identities=16% Similarity=-0.026 Sum_probs=55.3
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL 186 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~ 186 (376)
..+..+|.++.|+|..++.+..+. .+..+. .+.|.++|.||+|+.+.+. ......+....+..++.+|+++
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 152 (175)
T 2nzj_A 73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATL 152 (175)
T ss_dssp HTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTT
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCC
Confidence 456789999999998765432111 111121 2679999999999976422 1122223334567889999999
Q ss_pred CcchhhhhHHHHHh
Q 017132 187 GMGTMKLSRLAKAL 200 (376)
Q Consensus 187 g~gi~~L~~~l~~l 200 (376)
|.|+.++.+.+.+.
T Consensus 153 g~gi~~l~~~l~~~ 166 (175)
T 2nzj_A 153 QHNVAELFEGVVRQ 166 (175)
T ss_dssp TBSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999887766543
No 231
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.77 E-value=1.8e-05 Score=68.01 Aligned_cols=85 Identities=9% Similarity=0.060 Sum_probs=52.8
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--------cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeC
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--------GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG 184 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa 184 (376)
...+..+|+++.|+|+..+.+.. .+..++ .+.|.++|.||+|+.+... ......+....+..++.+|+
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 152 (183)
T 2fu5_C 75 TAYYRGAMGIMLVYDITNEKSFD--NIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSA 152 (183)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC
T ss_pred HHHHhcCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeC
Confidence 35678999999999998754321 122221 2578999999999975321 12222334455778999999
Q ss_pred cCCcchhhhhHHHHHhh
Q 017132 185 QLGMGTMKLSRLAKALA 201 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~l~ 201 (376)
++|.|+.++.+.+.+..
T Consensus 153 ~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 153 KANINVENAFFTLARDI 169 (183)
T ss_dssp ---CCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999877665443
No 232
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.77 E-value=7.1e-06 Score=86.50 Aligned_cols=58 Identities=21% Similarity=0.298 Sum_probs=36.0
Q ss_pred ceEEeEeecCCCCcchhhhhhhhccccc-----------ccC------CCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP-----------AAP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~-----------v~~------~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
..+|+|+|.+|+|||||+|+|++..... +.+ .+|+|.......+ +..+.|+||||...
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 4679999999999999999998532111 112 3566655332222 45789999999975
No 233
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.76 E-value=1.3e-05 Score=77.68 Aligned_cols=24 Identities=50% Similarity=0.664 Sum_probs=21.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhh
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~ 239 (376)
...+|+++|.||||||||+|+|+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999973
No 234
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.76 E-value=4e-05 Score=66.96 Aligned_cols=88 Identities=9% Similarity=-0.110 Sum_probs=59.5
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCc--H---HHHHHhc--CCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEee
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWLG--NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSN 183 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~--~---~l~~~l~--~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iS 183 (376)
.....+..+|.++.|+|+.++.+... . ++..... +.|+++|+||+|+.+... ......+....+..++.+|
T Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (206)
T 2bov_A 78 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS 157 (206)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEe
Confidence 33456788999999999887543211 1 1222222 679999999999976422 2233344455677899999
Q ss_pred CcCCcchhhhhHHHHHh
Q 017132 184 GQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 184 a~~g~gi~~L~~~l~~l 200 (376)
++.|.|+.++.+.+.+.
T Consensus 158 a~~g~gi~~l~~~l~~~ 174 (206)
T 2bov_A 158 AKTRANVDKVFFDLMRE 174 (206)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999887665443
No 235
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.74 E-value=2.1e-05 Score=66.29 Aligned_cols=88 Identities=13% Similarity=0.026 Sum_probs=58.0
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCC--cHHHH---HHh---cCCCeEEEEEccCCCCHHhH--HHHHHHHHHhCceEEEee
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTT--HPLMD---QWL---GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSN 183 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~--~~~l~---~~l---~~kp~ilVlNK~DL~~~~~~--~~w~~~~~~~g~~vi~iS 183 (376)
....+..+|.++.|+|+.++.+.. ...+. ... .+.|.++|+||+|+.+.+.. ..........+..++.+|
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 147 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETS 147 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEec
Confidence 345678899999999998653321 11121 221 25899999999999754321 111222334567889999
Q ss_pred CcCCcchhhhhHHHHHhh
Q 017132 184 GQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 184 a~~g~gi~~L~~~l~~l~ 201 (376)
+++|.|+.++.+.+.+..
T Consensus 148 a~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 148 AKLNHNVKELFQELLNLE 165 (172)
T ss_dssp TTTTBSHHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHHHH
Confidence 999999999887766543
No 236
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.74 E-value=6.7e-05 Score=64.81 Aligned_cols=105 Identities=10% Similarity=-0.028 Sum_probs=62.6
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc--CCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG--NRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l~--~kp~ilVlNK~DL 159 (376)
..++.+|| + ||+ ..........+..+|+++.|+|..++.+..+. ++..... +.|.++|+||+|+
T Consensus 68 ~~~~~l~D---t-----~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 138 (190)
T 3con_A 68 TCLLDILD---T-----AGQ-EEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138 (190)
T ss_dssp EEEEEEEE---C-----CC------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTC
T ss_pred EEEEEEEE---C-----CCh-HHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcC
Confidence 35577787 2 443 22333444678999999999998875432111 1122222 6899999999999
Q ss_pred CCHHh-HHHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 160 ISMAD-RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 160 ~~~~~-~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
.+... .....+.....+..++.+|++.|.|+.++.+.+.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 180 (190)
T 3con_A 139 PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE 180 (190)
T ss_dssp SCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 76321 122223344556789999999999999887766543
No 237
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.73 E-value=4.5e-05 Score=67.81 Aligned_cols=104 Identities=13% Similarity=0.057 Sum_probs=58.6
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCCCC
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMIS 161 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~------~l~~~l~~kp~ilVlNK~DL~~ 161 (376)
..+.+|| .||+ ..........+..+|+++.|+|+.++.+..+. .+.....+.|+++|.||+|+.+
T Consensus 82 ~~l~l~D--------t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 82 VHLHIWD--------TAGQ-DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp EEEEEEE--------C----------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGS
T ss_pred EEEEEEE--------CCCc-hhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhc
Confidence 4566776 2443 23333334568899999999998865432211 1111123689999999999986
Q ss_pred HHhHH--------------HHHHHHHHhCc-eEEEeeCcCCcchhhhhHHHHHh
Q 017132 162 MADRN--------------AWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 162 ~~~~~--------------~w~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
..... ...++....+. .++.+|++.|.|+.++.+.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~ 206 (214)
T 2j1l_A 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEV 206 (214)
T ss_dssp CHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred cchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 54221 11223334454 78899999999999887766543
No 238
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.73 E-value=1.4e-05 Score=67.30 Aligned_cols=87 Identities=11% Similarity=-0.009 Sum_probs=57.7
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeC
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG 184 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa 184 (376)
.....+..+|+++.|+|+..+.+..+ ..+..+. ...|+++|.||+|+.+... ......+....+..++.+|+
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 150 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSA 150 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeC
Confidence 34467899999999999886542211 1112222 2467888899999975321 12233344456778889999
Q ss_pred cCCcchhhhhHHHHH
Q 017132 185 QLGMGTMKLSRLAKA 199 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~ 199 (376)
++|.|+.++.+.+.+
T Consensus 151 ~~g~gi~~l~~~i~~ 165 (170)
T 1r2q_A 151 KTSMNVNEIFMAIAK 165 (170)
T ss_dssp TTCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999988776654
No 239
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.73 E-value=1.7e-05 Score=66.66 Aligned_cols=86 Identities=9% Similarity=0.023 Sum_probs=58.8
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCc--HHHHHH---hcCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcC
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---LGNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL 186 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~---l~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~ 186 (376)
....+..+|+++.|+|+..+.+... ..+..+ ..+.|.++|+||+|+.+... .........+.+..++.+|++.
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (168)
T 1z2a_A 71 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKE 150 (168)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCC
Confidence 3456789999999999987542211 111222 23789999999999976321 2233334455678899999999
Q ss_pred CcchhhhhHHHHH
Q 017132 187 GMGTMKLSRLAKA 199 (376)
Q Consensus 187 g~gi~~L~~~l~~ 199 (376)
|.|+.++.+.+.+
T Consensus 151 ~~~i~~l~~~l~~ 163 (168)
T 1z2a_A 151 DLNVSEVFKYLAE 163 (168)
T ss_dssp TBSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999988776643
No 240
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.73 E-value=5.5e-05 Score=65.91 Aligned_cols=103 Identities=13% Similarity=0.146 Sum_probs=64.5
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-cCCCeEEEEEccCCCC
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-GNRKRILVLNREDMIS 161 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l-~~kp~ilVlNK~DL~~ 161 (376)
..+.+|| + ||+ .+........+..+|+++.|+|+.++.+..+. .+.... .+.|.++|+||+|+.+
T Consensus 75 ~~l~l~D---t-----~G~-~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 75 IRLQIWD---T-----AGQ-ERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp EEEEEEE---E-----CCS-GGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred EEEEEEe---C-----CCc-HHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 4567777 2 332 22334445678999999999999875433221 111111 2578999999999975
Q ss_pred HHh--HHHHHHHHHH-hCceEEEeeCcCCcchhhhhHHHHH
Q 017132 162 MAD--RNAWATYFAK-QGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 162 ~~~--~~~w~~~~~~-~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
..+ ......+... .+..++.+|+++|.|+.++.+.+.+
T Consensus 146 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~ 186 (192)
T 2il1_A 146 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 186 (192)
T ss_dssp GCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 422 1122222223 2567889999999999988776543
No 241
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.73 E-value=3.2e-05 Score=68.24 Aligned_cols=85 Identities=11% Similarity=-0.023 Sum_probs=56.5
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HH----HHHhcCCCeEEEEEccCCCCHHh----------HHHHHHHHHHhCc-e
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDMISMAD----------RNAWATYFAKQGT-K 178 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l----~~~l~~kp~ilVlNK~DL~~~~~----------~~~w~~~~~~~g~-~ 178 (376)
..+..+|+++.|+|..++.+..+. .+ .....+.|.++|.||+|+.+... .....+.....+. .
T Consensus 76 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 155 (212)
T 2j0v_A 76 LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAA 155 (212)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSE
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCce
Confidence 457889999999998775432211 11 11122689999999999976432 1222233344564 7
Q ss_pred EEEeeCcCCcchhhhhHHHHHh
Q 017132 179 VIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~l 200 (376)
++.+|+++|.|+.++.+.+.+.
T Consensus 156 ~~~~Sa~~g~gi~~l~~~l~~~ 177 (212)
T 2j0v_A 156 YIECSSKTQQNVKAVFDTAIKV 177 (212)
T ss_dssp EEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEccCCCCCCHHHHHHHHHHH
Confidence 8899999999999887766543
No 242
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.72 E-value=3e-05 Score=67.82 Aligned_cols=105 Identities=10% Similarity=0.037 Sum_probs=58.5
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-------cCCCeEEEEEcc
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-------GNRKRILVLNRE 157 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-------~~kp~ilVlNK~ 157 (376)
...+.+|| .||+ ..........+..+|+++.|+|+..+.+..+ ..+..+. .+.|.++|+||+
T Consensus 72 ~~~~~l~D--------t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~ 142 (208)
T 2yc2_C 72 SVELFLLD--------TAGS-DLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKT 142 (208)
T ss_dssp EEEEEEEE--------TTTT-HHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC
T ss_pred EEEEEEEE--------CCCc-HHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECc
Confidence 34567777 2554 2333444466899999999999877543211 1111221 367899999999
Q ss_pred CCCC-HHh--HHHHHHHHHHhCceEEEeeCcC-CcchhhhhHHHHHh
Q 017132 158 DMIS-MAD--RNAWATYFAKQGTKVIFSNGQL-GMGTMKLSRLAKAL 200 (376)
Q Consensus 158 DL~~-~~~--~~~w~~~~~~~g~~vi~iSa~~-g~gi~~L~~~l~~l 200 (376)
|+.+ ... .....++....+..++.+|++. |.|+.++.+.+.+.
T Consensus 143 Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 143 DLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATT 189 (208)
T ss_dssp -------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHH
T ss_pred ccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHH
Confidence 9987 322 2233344455677889999999 99999887665543
No 243
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.72 E-value=8.7e-05 Score=65.25 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=66.4
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh----cCCCeEEEEEccCCCC
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMIS 161 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l----~~kp~ilVlNK~DL~~ 161 (376)
..+.+|| + ||+ .+........+..+|+++.|+|+.++.+..+ ..+..+. .+.|+++|.||+|+.+
T Consensus 78 ~~l~i~D---t-----~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 78 VKLQIWD---T-----AGQ-ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp EEEEEEC---C-----TTC-GGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred EEEEEEE---C-----CCc-HhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 4567777 2 343 2233344567899999999999876543211 1122221 3578999999999975
Q ss_pred HHh--HHHHHHHHHHhCc-eEEEeeCcCCcchhhhhHHHHHh
Q 017132 162 MAD--RNAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 162 ~~~--~~~w~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
.+. .....++....+. .++.+|+++|.|+.++.+.+.+.
T Consensus 149 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 190 (201)
T 2hup_A 149 LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATE 190 (201)
T ss_dssp GCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 321 1223333445566 88999999999999887765443
No 244
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.72 E-value=8.5e-05 Score=63.15 Aligned_cols=85 Identities=14% Similarity=0.034 Sum_probs=56.0
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHhHHHHHHHHHHhC---------ceEEEeeC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFAKQG---------TKVIFSNG 184 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g---------~~vi~iSa 184 (376)
..+..+|+++.|+|+..+......+....+ .+.|.++|+||+|+.+... ......+...+ ..++.+|+
T Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 74 RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 346789999999998876443332222222 3689999999999986321 12222222211 36888999
Q ss_pred cCCcchhhhhHHHHHhh
Q 017132 185 QLGMGTMKLSRLAKALA 201 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~l~ 201 (376)
++|.|+.++.+.+.+..
T Consensus 153 ~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 153 KTKEGLDHLLEMILLVS 169 (178)
T ss_dssp SSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999998877765543
No 245
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.72 E-value=3.2e-05 Score=67.33 Aligned_cols=88 Identities=11% Similarity=-0.011 Sum_probs=59.9
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeC
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG 184 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~~--~l~~~l----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa 184 (376)
.....+..+|+++.|+|+..+.+.... .+..+. .+.|+++|+||+|+.+.+. .....++..+.+..++.+|+
T Consensus 88 ~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 167 (192)
T 2fg5_A 88 LAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSA 167 (192)
T ss_dssp GTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBT
T ss_pred hhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 344678899999999998875432211 111111 2678999999999975321 23344445556778899999
Q ss_pred cCCcchhhhhHHHHHh
Q 017132 185 QLGMGTMKLSRLAKAL 200 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~l 200 (376)
+.|.|+.++.+.+.+.
T Consensus 168 ~~~~gi~~l~~~l~~~ 183 (192)
T 2fg5_A 168 KNAINIEELFQGISRQ 183 (192)
T ss_dssp TTTBSHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHH
Confidence 9999999987776544
No 246
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.71 E-value=3.4e-05 Score=66.82 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=67.0
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh--cCCCeEEEEEccCCCCHH
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL--GNRKRILVLNREDMISMA 163 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~--~l~~~l--~~kp~ilVlNK~DL~~~~ 163 (376)
..+.+||- ||+. .........+..+|+++.|+|+..+.+.... .+..+. ...|+++|+||+|+....
T Consensus 93 ~~~~i~Dt--------~G~~-~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~ 163 (208)
T 3clv_A 93 IKFDIWDT--------AGQE-RYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQ 163 (208)
T ss_dssp EEEEEEEC--------TTGG-GCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CC
T ss_pred eEEEEEEC--------CCcH-HHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCccccc
Confidence 45677772 4432 2233445678999999999999876432221 122222 258999999999942211
Q ss_pred -hHHHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 164 -DRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 164 -~~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
......++....+..++.+|++.|.|+.++.+.+.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 201 (208)
T 3clv_A 164 VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEE 201 (208)
T ss_dssp SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHH
Confidence 2234445556667889999999999999887766543
No 247
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.71 E-value=3e-05 Score=66.72 Aligned_cols=84 Identities=11% Similarity=0.052 Sum_probs=56.6
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCCCCHHhHHHHHHHHH-----HhCceEEEe
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFS 182 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~w~~~~~-----~~g~~vi~i 182 (376)
...+..+|+++.|+|+..+.+..+ ..+..++ .+.|.++|+||+|+........+.+.+. ..+..++.+
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 162 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQAC 162 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEc
Confidence 456789999999999988643222 1233333 3578999999999986432233333321 223478899
Q ss_pred eCcCCcchhhhhHHHH
Q 017132 183 NGQLGMGTMKLSRLAK 198 (376)
Q Consensus 183 Sa~~g~gi~~L~~~l~ 198 (376)
|+++|.|+.++.+.+.
T Consensus 163 Sa~~g~gi~~l~~~l~ 178 (181)
T 2h17_A 163 CALTGEGLCQGLEWMM 178 (181)
T ss_dssp BTTTTBTHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHH
Confidence 9999999988876653
No 248
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.71 E-value=3.5e-05 Score=66.63 Aligned_cols=85 Identities=15% Similarity=0.083 Sum_probs=57.6
Q ss_pred HHhhhcCeEEEEEecCCCCCCC--cHHHHHHhc-----CCCeEEEEEccCCCCHHhHHHHHHHHH-----HhCceEEEee
Q 017132 116 DQLKLMDVVIEVRDARIPLSTT--HPLMDQWLG-----NRKRILVLNREDMISMADRNAWATYFA-----KQGTKVIFSN 183 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~--~~~l~~~l~-----~kp~ilVlNK~DL~~~~~~~~w~~~~~-----~~g~~vi~iS 183 (376)
..+..+|+++.|+|+.++.+.. ...+..++. +.|.++|+||+|+.+......+.+.+. ..+..++.+|
T Consensus 85 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 164 (189)
T 2x77_A 85 CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSS 164 (189)
T ss_dssp SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECC
T ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEcc
Confidence 3467899999999998775322 122333332 578999999999987533333333221 2234688899
Q ss_pred CcCCcchhhhhHHHHHh
Q 017132 184 GQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 184 a~~g~gi~~L~~~l~~l 200 (376)
+++|.|+.++.+.+.+.
T Consensus 165 a~~~~gi~~l~~~l~~~ 181 (189)
T 2x77_A 165 SKTGDGLVEGMDWLVER 181 (189)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHH
Confidence 99999999887766544
No 249
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.70 E-value=2.9e-05 Score=65.15 Aligned_cols=85 Identities=11% Similarity=-0.061 Sum_probs=56.2
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCc--HHHH---HHh--cCCCeEEEEEccCCCCHHh--HHHHHHHHHHh-CceEEEeeC
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTH--PLMD---QWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQ-GTKVIFSNG 184 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~--~~l~---~~l--~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~-g~~vi~iSa 184 (376)
...+..+|.++.|+|+.++.+..+ ..+. ... .+.|.++|+||+|+.+.+. ......+.... +..++.+|+
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSA 148 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecC
Confidence 356778999999999887532211 1122 221 2689999999999975422 12222233333 577889999
Q ss_pred cCCcchhhhhHHHHH
Q 017132 185 QLGMGTMKLSRLAKA 199 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~ 199 (376)
++|.|+.++.+.+.+
T Consensus 149 ~~~~gi~~l~~~l~~ 163 (167)
T 1c1y_A 149 KSKINVNEIFYDLVR 163 (167)
T ss_dssp TTTBSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999988776643
No 250
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.70 E-value=5.3e-05 Score=64.43 Aligned_cols=87 Identities=15% Similarity=0.079 Sum_probs=58.6
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHHHH---hcCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcCCc
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQW---LGNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGM 188 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~~~---l~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~g~ 188 (376)
..+..+|+++.|+|+.++.+.... .+..+ ....|.++|+||+|+.+... ...........+..++.+|+++|.
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (181)
T 3tw8_B 77 TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENV 156 (181)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 457889999999999875332211 11111 12578999999999875431 122233344557789999999999
Q ss_pred chhhhhHHHHHhhh
Q 017132 189 GTMKLSRLAKALAS 202 (376)
Q Consensus 189 gi~~L~~~l~~l~~ 202 (376)
|+.++.+.+.+...
T Consensus 157 gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 157 NVEEMFNCITELVL 170 (181)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99998777665443
No 251
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.70 E-value=0.00015 Score=65.02 Aligned_cols=87 Identities=14% Similarity=0.031 Sum_probs=57.3
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcH---HHHH-Hhc---CCCeEEEEEccCCCCHHhH-----HHHHHHHHHhC--ceEE
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTHP---LMDQ-WLG---NRKRILVLNREDMISMADR-----NAWATYFAKQG--TKVI 180 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~~---~l~~-~l~---~kp~ilVlNK~DL~~~~~~-----~~w~~~~~~~g--~~vi 180 (376)
......+|+++.|+|+..+.+.... .+.. +.. ..|+++|+||+|+.+.+.. ..........+ ..++
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 3456788999999999887554322 1222 222 6899999999999865321 12222233344 6788
Q ss_pred EeeCcCCcchhhhhHHHHHhh
Q 017132 181 FSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 181 ~iSa~~g~gi~~L~~~l~~l~ 201 (376)
.+|++.|.|+.++.+.+.+..
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHH
Confidence 999999999999877665443
No 252
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.68 E-value=3.9e-05 Score=65.68 Aligned_cols=87 Identities=11% Similarity=0.022 Sum_probs=58.6
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCCCCHHhHHHHHHHHHH-----hCceEEEe
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK-----QGTKVIFS 182 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~w~~~~~~-----~g~~vi~i 182 (376)
...+..+|+++.|+|+.++.+..+ ..+..++ .+.|.++|+||+|+.+......+.+.+.. .+..++.+
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 159 (183)
T 1moz_A 80 RCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVAS 159 (183)
T ss_dssp GGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEE
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEc
Confidence 355789999999999987643221 2233333 35789999999999865333333333321 23468889
Q ss_pred eCcCCcchhhhhHHHHHhh
Q 017132 183 NGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 183 Sa~~g~gi~~L~~~l~~l~ 201 (376)
|+++|.|+.++.+.+.+..
T Consensus 160 Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 160 SAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp BGGGTBTHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 9999999999877765543
No 253
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.67 E-value=3e-06 Score=75.62 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=26.7
Q ss_pred ceEEeEeecCCCCcchhhhhhhhc-----ccccccCCCCce
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKR-----RMCPAAPRPGVT 252 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~-----~~~~v~~~pg~T 252 (376)
..+|+++|++|||||||+|+|++. +...+...+++|
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~ 70 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSK 70 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCc
Confidence 457999999999999999999864 223344455554
No 254
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.67 E-value=3.2e-05 Score=65.87 Aligned_cols=86 Identities=15% Similarity=0.035 Sum_probs=56.3
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh------cCCC-eEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEee
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL------GNRK-RILVLNREDMISMAD--RNAWATYFAKQGTKVIFSN 183 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~~--~l~~~l------~~kp-~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iS 183 (376)
...+..+|+++.|+|+.++.+..+. .+..+. ...| +++|.||+|+.+... ......+....+..++.+|
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 153 (178)
T 2hxs_A 74 DKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVS 153 (178)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEEC
T ss_pred hHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEe
Confidence 4568899999999999875432211 111111 1456 789999999975321 1222233345577889999
Q ss_pred CcCCcchhhhhHHHHHh
Q 017132 184 GQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 184 a~~g~gi~~L~~~l~~l 200 (376)
+++|.|+.++.+.+.+.
T Consensus 154 a~~~~gi~~l~~~l~~~ 170 (178)
T 2hxs_A 154 AKTGDSVFLCFQKVAAE 170 (178)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999887766543
No 255
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.66 E-value=1.1e-05 Score=81.16 Aligned_cols=57 Identities=26% Similarity=0.278 Sum_probs=32.3
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccc------------------------cc------cCCCCceeEEEEEEe---CCe
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMC------------------------PA------APRPGVTRVLKWVRF---GKD 263 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~------------------------~v------~~~pg~T~~~~~~~~---~~~ 263 (376)
.++|+++|.+|+|||||+|+|+..... .+ +...|+|.+.....+ +..
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~ 122 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRR 122 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEE
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeE
Confidence 478999999999999999999742211 01 123577877643222 456
Q ss_pred EEEEeCCCCc
Q 017132 264 LEFLDSPGII 273 (376)
Q Consensus 264 i~l~DTpG~i 273 (376)
+.++||||..
T Consensus 123 ~~iiDtPGh~ 132 (467)
T 1r5b_A 123 FSLLDAPGHK 132 (467)
T ss_dssp EEECCCCC--
T ss_pred EEEEECCCcH
Confidence 8999999974
No 256
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.66 E-value=1.6e-05 Score=81.19 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=35.4
Q ss_pred ceEEeEeecCCCCcchhhhhhhhccccc---------------cc------CCCCceeEEEE--EEe-CCeEEEEeCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCP---------------AA------PRPGVTRVLKW--VRF-GKDLEFLDSPGI 272 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~---------------v~------~~pg~T~~~~~--~~~-~~~i~l~DTpG~ 272 (376)
..+|+++|.+|+|||||+|+|+...... +. ...|+|.+... +.. +..+.|+||||.
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 3579999999999999999998632111 11 13455544221 122 457899999998
Q ss_pred cC
Q 017132 273 IP 274 (376)
Q Consensus 273 i~ 274 (376)
..
T Consensus 93 ~d 94 (529)
T 2h5e_A 93 ED 94 (529)
T ss_dssp TT
T ss_pred hh
Confidence 54
No 257
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.66 E-value=2.8e-05 Score=65.51 Aligned_cols=87 Identities=15% Similarity=0.010 Sum_probs=57.9
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh----cCCCeEEEEEccCCCCHHh-HHHHHHHHHHhCceEEEeeCcC
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQL 186 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l----~~kp~ilVlNK~DL~~~~~-~~~w~~~~~~~g~~vi~iSa~~ 186 (376)
....+..+|+++.|+|+..+.+..+ ..+..+. .+.|.++|+||+|+..... .....++..+.+..++.+|+++
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 148 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKN 148 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCC
Confidence 3456789999999999886543211 1111111 2678999999999954321 1222233445577899999999
Q ss_pred CcchhhhhHHHHHh
Q 017132 187 GMGTMKLSRLAKAL 200 (376)
Q Consensus 187 g~gi~~L~~~l~~l 200 (376)
|.|+.++.+.+.+.
T Consensus 149 ~~gv~~l~~~l~~~ 162 (170)
T 1g16_A 149 DDNVNEIFFTLAKL 162 (170)
T ss_dssp TBSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999887766544
No 258
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.65 E-value=3.3e-05 Score=66.99 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=58.7
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHH---h-cCCCeEEEEEccCCCCHHhH--HHHHHHHHHhCceEEEeeC
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L-GNRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNG 184 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~---l-~~kp~ilVlNK~DL~~~~~~--~~w~~~~~~~g~~vi~iSa 184 (376)
.....+..+|+++.|+|+.++.+... ..+..+ . .+.|.++|.||+|+.+.... .....+....+..++.+|+
T Consensus 81 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (196)
T 3tkl_A 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSA 160 (196)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECT
T ss_pred hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeC
Confidence 34467899999999999887543211 111111 1 15789999999999865321 2222334455778999999
Q ss_pred cCCcchhhhhHHHHHh
Q 017132 185 QLGMGTMKLSRLAKAL 200 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~l 200 (376)
++|.|+.++.+.+.+.
T Consensus 161 ~~g~gv~~l~~~l~~~ 176 (196)
T 3tkl_A 161 KNATNVEQSFMTMAAE 176 (196)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999887665443
No 259
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.65 E-value=6.5e-05 Score=63.91 Aligned_cols=104 Identities=9% Similarity=-0.013 Sum_probs=60.3
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-----cCCCeEEEEEcc
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNRE 157 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l-----~~kp~ilVlNK~ 157 (376)
..+.+|| .||+ ..........+..+|.++.|+|+.++.+..+. ++.... .+.|.++|+||+
T Consensus 58 ~~~~l~D--------t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 128 (182)
T 1ky3_A 58 ATMQVWD--------TAGQ-ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128 (182)
T ss_dssp EEEEEEC--------CC-----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECT
T ss_pred EEEEEEE--------CCCC-hHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECC
Confidence 4566676 2443 22333334568899999999998775432111 111111 357999999999
Q ss_pred CCCCHHh---HHHHHHHHH-HhCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 158 DMISMAD---RNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 158 DL~~~~~---~~~w~~~~~-~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
|+..... .....++.. ..+..++.+|++.|.|+.++.+.+.+.
T Consensus 129 Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 175 (182)
T 1ky3_A 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS 175 (182)
T ss_dssp TSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHH
Confidence 9964321 112222222 234678999999999999887766543
No 260
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.65 E-value=1e-05 Score=83.68 Aligned_cols=56 Identities=23% Similarity=0.420 Sum_probs=37.0
Q ss_pred CceEEeEeecCCCCcchhhhhhhhcccccccCCC-CceeEE--EEEEe-------------------CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRP-GVTRVL--KWVRF-------------------GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~p-g~T~~~--~~~~~-------------------~~~i~l~DTpG~i 273 (376)
++++|+++|.+|+|||||+|+|++... ....+ |+|.+. ..... ...+.++||||..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v--~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAV--ASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHH--SCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccC--ccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 356899999999999999999997532 23333 555542 22211 0148999999985
No 261
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.64 E-value=2.8e-05 Score=65.36 Aligned_cols=87 Identities=11% Similarity=0.004 Sum_probs=57.5
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCCH---H-hH-HHHHHHHHHhCceEEE
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISM---A-DR-NAWATYFAKQGTKVIF 181 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~~--~l~~~l----~~kp~ilVlNK~DL~~~---~-~~-~~w~~~~~~~g~~vi~ 181 (376)
.....+..+|+++.|+|+.++.+..+. .+..+. .+.|.++|+||+|+.+. . .. ..........+..++.
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~ 147 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFE 147 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEE
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 345678999999999999875432211 112221 25788999999999753 1 11 1112233445778899
Q ss_pred eeCcCCcchhhhhHHHHH
Q 017132 182 SNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 182 iSa~~g~gi~~L~~~l~~ 199 (376)
+|+++|.|+.++.+.+.+
T Consensus 148 ~Sa~~~~gi~~l~~~l~~ 165 (170)
T 1ek0_A 148 TSAKTGENVNDVFLGIGE 165 (170)
T ss_dssp CCTTTCTTHHHHHHHHHT
T ss_pred EeCCCCCCHHHHHHHHHH
Confidence 999999999888766543
No 262
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.63 E-value=3.3e-05 Score=65.04 Aligned_cols=87 Identities=8% Similarity=-0.060 Sum_probs=57.3
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeC
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG 184 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~~-~-l~~~l----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa 184 (376)
.....+..+|+++.|+|+.++.+..+. . +..+. ...|+++|.||+|+.+..+ ......+....+..++.+|+
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 150 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSA 150 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 344678999999999999775432221 1 11111 2467889999999976432 11222333455678899999
Q ss_pred cCCcchhhhhHHHHH
Q 017132 185 QLGMGTMKLSRLAKA 199 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~ 199 (376)
+.|.|+.++.+.+.+
T Consensus 151 ~~~~~i~~l~~~i~~ 165 (170)
T 1z0j_A 151 KNAININELFIEISR 165 (170)
T ss_dssp TTTBSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 999999988776644
No 263
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.63 E-value=7.3e-05 Score=62.98 Aligned_cols=84 Identities=18% Similarity=0.039 Sum_probs=56.3
Q ss_pred HHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL 186 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~--~~l~~~l~-----~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~ 186 (376)
..+..+|+++.|+|..++.+... ..+..+.. +.|.++|.||+|+.+... .....++....+..++.+|+++
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (169)
T 3q85_A 71 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL 150 (169)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred hhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCcc
Confidence 45778999999999977533221 22222221 679999999999974321 1222233445577889999999
Q ss_pred CcchhhhhHHHHH
Q 017132 187 GMGTMKLSRLAKA 199 (376)
Q Consensus 187 g~gi~~L~~~l~~ 199 (376)
|.|+.++.+.+.+
T Consensus 151 ~~~v~~l~~~l~~ 163 (169)
T 3q85_A 151 HHNTRELFEGAVR 163 (169)
T ss_dssp TBSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999988766543
No 264
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.63 E-value=2.1e-05 Score=70.35 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.7
Q ss_pred ceEEeEeecCCCCcchhhhhhhhc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
..+|+++|.+|||||||+|+|++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999864
No 265
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.62 E-value=3.3e-05 Score=72.08 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=33.8
Q ss_pred eEEeEeecCCCCcchhhhhhhhccccccc-------CCCCceeE--E----EEEEeCCeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMCPAA-------PRPGVTRV--L----KWVRFGKDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~~v~-------~~pg~T~~--~----~~~~~~~~i~l~DTpG~i~ 274 (376)
.++++||-+|+|||||||.|+|......+ +.+.++.. . |...+...+.+.|||||-.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~ 72 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGD 72 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--C
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhh
Confidence 57999999999999999999985433222 22222221 1 1111234678999999964
No 266
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.61 E-value=5.3e-05 Score=72.59 Aligned_cols=105 Identities=10% Similarity=0.087 Sum_probs=66.3
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc-----CCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG-----NRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l~-----~kp~ilVlNK~DL 159 (376)
+..+.+|| .||+ ..........+..+|+++.|+|+.++.+... ..+..++. +.|+++|.||+|+
T Consensus 208 ~~~l~i~D--------t~G~-~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl 278 (329)
T 3o47_A 208 NISFTVWD--------VGGQ-DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 278 (329)
T ss_dssp TEEEEEEE--------CC------CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred cEEEEEEE--------CCCC-HhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccC
Confidence 34556666 2453 3333444567899999999999976544322 22333332 5789999999999
Q ss_pred CCHHhHHHHHHHHHH-----hCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 160 ISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 160 ~~~~~~~~w~~~~~~-----~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
.+......+...+.. .+..++.+|+++|.|+.++.+.+.+.
T Consensus 279 ~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~ 324 (329)
T 3o47_A 279 PNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQ 324 (329)
T ss_dssp TTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred CcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHH
Confidence 875544444444322 12457889999999999987766543
No 267
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.60 E-value=0.00014 Score=63.06 Aligned_cols=106 Identities=14% Similarity=0.018 Sum_probs=67.8
Q ss_pred cCCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh----cCCCeEEEEEccCC
Q 017132 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDM 159 (376)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l----~~kp~ilVlNK~DL 159 (376)
.+..+.+|| .||+ ..........+..+|+++.|+|+.++.+... ..+..+. .+.|+++|.||+|+
T Consensus 70 ~~~~~~i~D--------t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 140 (191)
T 3dz8_A 70 KRVKLQIWD--------TAGQ-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDM 140 (191)
T ss_dssp TTEEEEEEC--------HHHH-HHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred EEEEEEEEe--------CCCh-HHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 344566666 3564 3444555677999999999999876433211 1111111 26789999999999
Q ss_pred CCHHh--HHHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 160 ~~~~~--~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
.+... ...........+..++.+|+++|.|+.++.+.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 183 (191)
T 3dz8_A 141 EEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDA 183 (191)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 64321 111222334457788999999999999887665443
No 268
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.60 E-value=5.4e-05 Score=75.03 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=38.5
Q ss_pred eEEeEeecCCCCcchhhhhhhhcccc---cccCCCCceeEEEEEEe-C----CeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRMC---PAAPRPGVTRVLKWVRF-G----KDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~~---~v~~~pg~T~~~~~~~~-~----~~i~l~DTpG~i~ 274 (376)
++++|||.+|+|||||||.|+|.... .....++.|+....+-. . ..+.+.|||||-.
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhh
Confidence 45999999999999999999986311 12224666665322222 1 2578999999964
No 269
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.60 E-value=4.8e-05 Score=66.81 Aligned_cols=104 Identities=11% Similarity=0.026 Sum_probs=67.5
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCC
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMIS 161 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~--~l~~~l----~~kp~ilVlNK~DL~~ 161 (376)
..+.+|| .||+ ..........+..+|+++.|+|+..+.+..+. .+..+. .+.|+++|+||+|+.+
T Consensus 74 ~~l~l~D--------t~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 74 VKLQIWD--------TAGQ-ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDP 144 (200)
T ss_dssp EEEEEEC--------CTTH-HHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGG
T ss_pred eEEEEEc--------CCCc-HhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccc
Confidence 4566777 3554 23333344678999999999998875432211 111111 2578999999999965
Q ss_pred HHh--HHHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 162 MAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 162 ~~~--~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
... ......+....+..++.+|++.|.|+.++.+.+.+.
T Consensus 145 ~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 185 (200)
T 2o52_A 145 EREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCART 185 (200)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 322 123334445567788999999999999887665443
No 270
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.60 E-value=8.6e-05 Score=64.43 Aligned_cols=88 Identities=13% Similarity=0.015 Sum_probs=58.5
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCc--HH---HHHHh---cCCCeEEEEEccCCCCHHh-HHHHHHHHHHhCceEEEeeC
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTH--PL---MDQWL---GNRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNG 184 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~--~~---l~~~l---~~kp~ilVlNK~DL~~~~~-~~~w~~~~~~~g~~vi~iSa 184 (376)
....+..+|+++.|+|+.++.+..+ .. +.... .+.|+++|+||+|+.+... ...........+..++.+|+
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (199)
T 2gf0_A 73 QRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSA 152 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEec
Confidence 3456788999999999876533211 11 22221 2579999999999976332 12222233445678899999
Q ss_pred cCCcchhhhhHHHHHhh
Q 017132 185 QLGMGTMKLSRLAKALA 201 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~l~ 201 (376)
+.|.|+.++.+.+.+..
T Consensus 153 ~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 153 KMNYNVKELFQELLTLE 169 (199)
T ss_dssp TTTBSHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999877766543
No 271
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.59 E-value=6.3e-05 Score=65.77 Aligned_cols=105 Identities=13% Similarity=0.016 Sum_probs=66.0
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMI 160 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~--~l~~~l----~~kp~ilVlNK~DL~ 160 (376)
...+.+|| + ||+ .+........+..+|+++.|+|+..+.+.... .+..+. .+.|+++|+||+|+.
T Consensus 56 ~~~~~l~D---t-----~G~-~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (203)
T 1zbd_A 56 RIKLQIWD---T-----AGL-ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME 126 (203)
T ss_dssp EEEEEEEE---E-----CCS-GGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT
T ss_pred EEEEEEEE---C-----CCc-hhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence 34566676 2 333 22333445668999999999998765322111 111111 267899999999997
Q ss_pred CHHh--HHHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHHh
Q 017132 161 SMAD--RNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 161 ~~~~--~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
+... ...........+..++.+|++.|.|+.++.+.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 168 (203)
T 1zbd_A 127 DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 168 (203)
T ss_dssp TSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6321 122223334457789999999999998887665543
No 272
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.58 E-value=0.00016 Score=61.83 Aligned_cols=86 Identities=15% Similarity=0.067 Sum_probs=56.9
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCc--HHHHHH---h--cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCc
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQ 185 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~--~~l~~~---l--~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~ 185 (376)
...+..+|+++.|+|+.++.+..+ ..+..+ . .+.|+++|.||+|+.+... .....+.....+..++.+|++
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 163 (183)
T 3kkq_A 84 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163 (183)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCS
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccC
Confidence 456788999999999987533211 111211 1 2578999999999975321 112223334456789999999
Q ss_pred -CCcchhhhhHHHHHh
Q 017132 186 -LGMGTMKLSRLAKAL 200 (376)
Q Consensus 186 -~g~gi~~L~~~l~~l 200 (376)
+|.|+.++.+.+.+.
T Consensus 164 ~~~~~v~~l~~~l~~~ 179 (183)
T 3kkq_A 164 DPPLNVDKTFHDLVRV 179 (183)
T ss_dssp SSCBSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 999999887766543
No 273
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.58 E-value=0.00011 Score=64.94 Aligned_cols=68 Identities=18% Similarity=0.154 Sum_probs=42.3
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHH-HHHHHhhhcCeEEEEEecCCCCCCCcH---HHHHHh-------cCCCeEEEEE
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEK-ELKDQLKLMDVVIEVRDARIPLSTTHP---LMDQWL-------GNRKRILVLN 155 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k-~l~~vidr~dlILeV~DaR~p~~~~~~---~l~~~l-------~~kp~ilVlN 155 (376)
+..+.+|| .|||. .... .....+..+|+++.|+|+......... .+...+ .+.|+++|.|
T Consensus 53 ~~~~~i~D--------t~G~~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 123 (214)
T 2fh5_B 53 GNSLTLID--------LPGHE-SLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123 (214)
T ss_dssp CCEEEEEE--------CCCCH-HHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred ccEEEEEE--------CCCCh-hHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEE
Confidence 45677777 35543 3333 334568999999999998752211111 122111 1478999999
Q ss_pred ccCCCCHH
Q 017132 156 REDMISMA 163 (376)
Q Consensus 156 K~DL~~~~ 163 (376)
|+|+.+..
T Consensus 124 K~Dl~~~~ 131 (214)
T 2fh5_B 124 KQDIAMAK 131 (214)
T ss_dssp CTTSTTCC
T ss_pred CCCCCCcc
Confidence 99998653
No 274
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.58 E-value=0.00013 Score=68.93 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=62.8
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCC-HHhHHHHHHHHHH-hCc-eEEEeeCcCCcch
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMIS-MADRNAWATYFAK-QGT-KVIFSNGQLGMGT 190 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~-~~~~~~w~~~~~~-~g~-~vi~iSa~~g~gi 190 (376)
..++.+|+++.|+|+.. .+..+..+.+.+. +.|.++|+||+|+.. ......+...+.+ .+. .++++|+++|.|+
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 34688999999999977 5544555555554 789999999999997 5555455555544 343 6889999999999
Q ss_pred hhhhHHHHHhh
Q 017132 191 MKLSRLAKALA 201 (376)
Q Consensus 191 ~~L~~~l~~l~ 201 (376)
..|.+.+.+..
T Consensus 163 ~~l~~~i~~~l 173 (301)
T 1ega_A 163 DTIAAIVRKHL 173 (301)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhC
Confidence 98887776543
No 275
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.57 E-value=7.3e-05 Score=65.41 Aligned_cols=88 Identities=15% Similarity=0.009 Sum_probs=56.0
Q ss_pred HHHHHHhhhcCeEEEEEecCCCCCCCcHH--HHHHh----cCCCeEEEEEccCCCCHH-------h-HHHHHHHHHHhCc
Q 017132 112 KELKDQLKLMDVVIEVRDARIPLSTTHPL--MDQWL----GNRKRILVLNREDMISMA-------D-RNAWATYFAKQGT 177 (376)
Q Consensus 112 k~l~~vidr~dlILeV~DaR~p~~~~~~~--l~~~l----~~kp~ilVlNK~DL~~~~-------~-~~~w~~~~~~~g~ 177 (376)
......+..+|+++.|+|+..+.+..+.. +..+. .+.|+++|+||+|+.+.. . ...-..+....+.
T Consensus 92 ~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~ 171 (199)
T 2p5s_A 92 SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGA 171 (199)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred hhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCC
Confidence 34456788999999999987654322211 11111 267999999999996321 0 1111223334577
Q ss_pred eEEEeeCcCCcchhhhhHHHHH
Q 017132 178 KVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 178 ~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
.++.+|++.|.|+.++.+.+.+
T Consensus 172 ~~~~~SA~~g~gv~el~~~l~~ 193 (199)
T 2p5s_A 172 LFCETSAKDGSNIVEAVLHLAR 193 (199)
T ss_dssp EEEECCTTTCTTHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHH
Confidence 8889999999999888666543
No 276
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.56 E-value=8.4e-05 Score=73.12 Aligned_cols=94 Identities=16% Similarity=0.061 Sum_probs=61.0
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCC-H
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMIS-M 162 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp-~ilVlNK~DL~~-~ 162 (376)
+..+.+|| .|||. .+.+.+...+..+|+++.|+|+..+......+...++ .+.| .++|+||+|+.+ .
T Consensus 74 ~~~~~iiD--------tpG~~-~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~ 144 (405)
T 2c78_A 74 KRHYSHVD--------CPGHA-DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP 144 (405)
T ss_dssp SCEEEEEE--------CCCSG-GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH
T ss_pred CeEEEEEE--------CCChH-HHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcH
Confidence 34566776 36663 4556666778999999999999886543322222222 2567 789999999985 3
Q ss_pred HhHH----HHHHHHHHhC-----ceEEEeeCcCCcc
Q 017132 163 ADRN----AWATYFAKQG-----TKVIFSNGQLGMG 189 (376)
Q Consensus 163 ~~~~----~w~~~~~~~g-----~~vi~iSa~~g~g 189 (376)
+..+ +..+++...+ .+++++|+++|.|
T Consensus 145 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 145 ELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 2211 2333444444 4689999998876
No 277
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.55 E-value=3.7e-05 Score=66.03 Aligned_cols=83 Identities=14% Similarity=0.063 Sum_probs=56.9
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-----cCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCc
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGM 188 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~ 188 (376)
....+..+|+++.|+|+..+.+.....+...+ .+.|.++|.||+|+.+... .+ ....+..++.+||++|.
T Consensus 77 ~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~---~~~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 77 AWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL--GM---SEVNGHALIRLSARTGE 151 (172)
T ss_dssp HHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC--EE---EEETTEEEEECCTTTCT
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh--hh---hhccCCceEEEeCCCCC
Confidence 34568999999999999887665433322221 1579999999999854211 01 11234578889999999
Q ss_pred chhhhhHHHHHhh
Q 017132 189 GTMKLSRLAKALA 201 (376)
Q Consensus 189 gi~~L~~~l~~l~ 201 (376)
|+.++.+.+.+..
T Consensus 152 gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 152 GVDVLRNHLKQSM 164 (172)
T ss_dssp THHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHh
Confidence 9999877765543
No 278
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.55 E-value=0.00013 Score=64.68 Aligned_cols=86 Identities=6% Similarity=-0.076 Sum_probs=56.4
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhc-CCCeEEEEEccCCCCHHh-HHHHH-HHHHHhCceEEEeeCcCC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLG-NRKRILVLNREDMISMAD-RNAWA-TYFAKQGTKVIFSNGQLG 187 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l~-~kp~ilVlNK~DL~~~~~-~~~w~-~~~~~~g~~vi~iSa~~g 187 (376)
..+..+|+++.|+|+.++.+..+. .+..... +.|+++|+||+|+.+... ..... .+....+..++.+|+++|
T Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 159 (218)
T 4djt_A 80 VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTA 159 (218)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTT
T ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCC
Confidence 457889999999999876433221 1111222 479999999999987532 12222 233345678999999999
Q ss_pred cchhhhhHHHHHhh
Q 017132 188 MGTMKLSRLAKALA 201 (376)
Q Consensus 188 ~gi~~L~~~l~~l~ 201 (376)
.|+.++.+.+.+..
T Consensus 160 ~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 160 HNFGLPFLHLARIF 173 (218)
T ss_dssp BTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999877765543
No 279
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.55 E-value=9.2e-05 Score=63.17 Aligned_cols=84 Identities=12% Similarity=-0.097 Sum_probs=55.8
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHH----HHhcCCCeEEEEEccCCCCHHhH------------HHHHHHHHHhCc
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMD----QWLGNRKRILVLNREDMISMADR------------NAWATYFAKQGT 177 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~----~~l~~kp~ilVlNK~DL~~~~~~------------~~w~~~~~~~g~ 177 (376)
..+..+|+++.|+|+..+.+..+. .+. ....+.|.++|.||+|+.+.... ....++....+.
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 154 (182)
T 3bwd_D 75 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA 154 (182)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC
Confidence 457889999999998765432221 111 11236899999999999764331 122223334464
Q ss_pred -eEEEeeCcCCcchhhhhHHHHH
Q 017132 178 -KVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 178 -~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
.++.+|+++|.|+.++.+.+.+
T Consensus 155 ~~~~~~Sa~~~~gi~~l~~~l~~ 177 (182)
T 3bwd_D 155 PAYIECSSKSQENVKGVFDAAIR 177 (182)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 7889999999999988766543
No 280
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.55 E-value=5.5e-05 Score=65.94 Aligned_cols=86 Identities=13% Similarity=0.011 Sum_probs=57.2
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh--cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeC
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNG 184 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l--~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa 184 (376)
....+..+|+++.|+|+.++.+..+. .+.... .+.|+++|.||+|+.+... ......+....+..++.+|+
T Consensus 92 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 171 (196)
T 2atv_A 92 REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSA 171 (196)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCT
T ss_pred hhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECC
Confidence 34668899999999999875432211 122221 2678999999999975321 12222333445778899999
Q ss_pred cCCc-chhhhhHHHHH
Q 017132 185 QLGM-GTMKLSRLAKA 199 (376)
Q Consensus 185 ~~g~-gi~~L~~~l~~ 199 (376)
+.|. |+.++.+.+.+
T Consensus 172 ~~g~~gi~~l~~~l~~ 187 (196)
T 2atv_A 172 CTGEGNITEIFYELCR 187 (196)
T ss_dssp TTCTTCHHHHHHHHHH
T ss_pred CcCCcCHHHHHHHHHH
Confidence 9999 99888766543
No 281
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.54 E-value=0.00011 Score=71.01 Aligned_cols=84 Identities=14% Similarity=0.065 Sum_probs=56.7
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHh-----------CceEEEeeC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQ-----------GTKVIFSNG 184 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~-----------g~~vi~iSa 184 (376)
.++..+|+++.|+|+...... ..+...+.++|.++|+||+|+.+..........+.+. +.+++++|+
T Consensus 188 ~~~~~aD~vl~V~d~~~~~~~--~~l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA 265 (355)
T 3p32_A 188 AVANMVDTFVLLTLARTGDQL--QGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSA 265 (355)
T ss_dssp HHHTTCSEEEEEEESSTTCTT--TTCCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBG
T ss_pred HHHHhCCEEEEEECCCCCccH--HHHHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEc
Confidence 346999999999997643221 1111222346999999999998765443333333221 357999999
Q ss_pred cCCcchhhhhHHHHHhh
Q 017132 185 QLGMGTMKLSRLAKALA 201 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~l~ 201 (376)
++|.|+.+|.+.+.+..
T Consensus 266 ~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 266 VEGRGLAELWDTVERHR 282 (355)
T ss_dssp GGTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999987776553
No 282
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.54 E-value=6.8e-05 Score=63.14 Aligned_cols=84 Identities=15% Similarity=0.005 Sum_probs=56.1
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHHH---Hh-cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcCC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQ---WL-GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG 187 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~~---~l-~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~g 187 (376)
..+..+|.++.|+|+.++.+..+. .+.. .. .+.|.++|+||+|+.+... .....++....+..++.+|+++|
T Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (170)
T 1z08_A 74 IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQN 153 (170)
T ss_dssp CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCC
Confidence 457899999999998765422111 1111 11 3578999999999975321 12223334455778899999999
Q ss_pred cchhhhhHHHHH
Q 017132 188 MGTMKLSRLAKA 199 (376)
Q Consensus 188 ~gi~~L~~~l~~ 199 (376)
.|+.++.+.+.+
T Consensus 154 ~gi~~l~~~l~~ 165 (170)
T 1z08_A 154 KGIEELFLDLCK 165 (170)
T ss_dssp BSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999988776543
No 283
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.53 E-value=7.5e-05 Score=67.19 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=33.6
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccccCCCCceeE--EEEEEeC-C--eEEEEeCCCCc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRV--LKWVRFG-K--DLEFLDSPGII 273 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~--~~~~~~~-~--~i~l~DTpG~i 273 (376)
..||.+||-+|||||||+|+++... ......|.+..+ ...+..+ . .+.|.||+|--
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~-f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe 73 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC-CC----------CEEEEEECSSCEEEEEEECCSCTT
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCC-CCCCcCCccceEEEEEEEEecceEEEEEEEECCCch
Confidence 3689999999999999999998643 222222222222 2233332 2 46789999963
No 284
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.53 E-value=4.9e-05 Score=65.25 Aligned_cols=89 Identities=9% Similarity=-0.047 Sum_probs=59.4
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHH---h-cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEe
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQW---L-GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFS 182 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~~--~l~~~---l-~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~i 182 (376)
.......+..+|+++.|+|+..+.+..+. .+..+ . .+.|.++|.||+|+.+... ......+....+..++.+
T Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (186)
T 2bme_A 73 RSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLET 152 (186)
T ss_dssp HHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEe
Confidence 33445678999999999998875432211 11111 1 2578999999999964322 123334445567788999
Q ss_pred eCcCCcchhhhhHHHHH
Q 017132 183 NGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 183 Sa~~g~gi~~L~~~l~~ 199 (376)
|+++|.|+.++.+.+.+
T Consensus 153 Sa~~~~gi~~l~~~l~~ 169 (186)
T 2bme_A 153 SALTGENVEEAFVQCAR 169 (186)
T ss_dssp CTTTCTTHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHH
Confidence 99999999988766544
No 285
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.52 E-value=0.00042 Score=66.91 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=60.9
Q ss_pred HhhhcCeEEEEEecCCCCCC-CcH--H-HHHHh---cCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcc
Q 017132 117 QLKLMDVVIEVRDARIPLST-THP--L-MDQWL---GNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMG 189 (376)
Q Consensus 117 vidr~dlILeV~DaR~p~~~-~~~--~-l~~~l---~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~g 189 (376)
....+|.++.|+|+..+.+. ... . +..+. .++|+++|+||+|+............+...+..++++|++.|.|
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g 322 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG 322 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC
Confidence 34569999999998765421 111 1 22222 27899999999999987765555555556677889999999999
Q ss_pred hhhhhHHHHHhh
Q 017132 190 TMKLSRLAKALA 201 (376)
Q Consensus 190 i~~L~~~l~~l~ 201 (376)
+.++.+.+.+..
T Consensus 323 i~~l~~~i~~~l 334 (357)
T 2e87_A 323 IDLVKEEIIKTL 334 (357)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999887765544
No 286
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.52 E-value=0.00015 Score=62.59 Aligned_cols=86 Identities=12% Similarity=-0.036 Sum_probs=57.8
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcC
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL 186 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~~--~l~~~l----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~ 186 (376)
...+..+|+++.|+|+.++.+.... .+..+. .+.|.++|+||+|+.+... .....++....+..++.+|++.
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 168 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKE 168 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCC
Confidence 3557899999999998765332111 111111 2678999999999976432 1222333445577899999999
Q ss_pred CcchhhhhHHHHHh
Q 017132 187 GMGTMKLSRLAKAL 200 (376)
Q Consensus 187 g~gi~~L~~~l~~l 200 (376)
|.|+.++.+.+.+.
T Consensus 169 g~gi~~l~~~l~~~ 182 (189)
T 2gf9_A 169 NINVKQVFERLVDV 182 (189)
T ss_dssp TBSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999987766543
No 287
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.51 E-value=0.00021 Score=61.80 Aligned_cols=87 Identities=8% Similarity=-0.043 Sum_probs=58.2
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCc
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQ 185 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~ 185 (376)
....+..+|+++.|+|+..+.+... ..+..+. .+.|+++|+||+|+.+... ......+....+..++.+|++
T Consensus 91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (193)
T 2oil_A 91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSAL 170 (193)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTT
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 3456889999999999987543211 1122222 2568999999999975321 122223344567788999999
Q ss_pred CCcchhhhhHHHHHh
Q 017132 186 LGMGTMKLSRLAKAL 200 (376)
Q Consensus 186 ~g~gi~~L~~~l~~l 200 (376)
+|.|+.++.+.+.+.
T Consensus 171 ~~~gi~~l~~~l~~~ 185 (193)
T 2oil_A 171 DSTNVELAFETVLKE 185 (193)
T ss_dssp TCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999887765443
No 288
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.50 E-value=4.6e-05 Score=66.95 Aligned_cols=83 Identities=11% Similarity=0.029 Sum_probs=54.5
Q ss_pred HHhhhcCeEEEEEecCCCCCCC--cHHHHHHh-----cCCCeEEEEEccCCCC---HHhHHHHHHHHH------------
Q 017132 116 DQLKLMDVVIEVRDARIPLSTT--HPLMDQWL-----GNRKRILVLNREDMIS---MADRNAWATYFA------------ 173 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~--~~~l~~~l-----~~kp~ilVlNK~DL~~---~~~~~~w~~~~~------------ 173 (376)
..+..+|.++.|+|+.++.+.. ...+..++ .+.|.++|.||+|+.. .++...+.....
T Consensus 88 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (198)
T 1f6b_A 88 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKE 167 (198)
T ss_dssp GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTT
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCccccccccccccccc
Confidence 5578999999999998764322 12233332 3679999999999975 333333322110
Q ss_pred --HhCceEEEeeCcCCcchhhhhHHHH
Q 017132 174 --KQGTKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 174 --~~g~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
..+..++.+||++|.|+.++.+.+.
T Consensus 168 ~~~~~~~~~~~SA~~g~gv~~l~~~l~ 194 (198)
T 1f6b_A 168 LNARPLEVFMCSVLKRQGYGEGFRWMA 194 (198)
T ss_dssp CCSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred ccCceEEEEEEECCCCCCHHHHHHHHH
Confidence 0234678899999999988876654
No 289
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.50 E-value=3.7e-05 Score=77.23 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=62.3
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcchhhhhH
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (376)
..+..+|+++.|+|+..+....+.++...+..+|.++|+||+|+.+....... +.+ ..+..++.+|+++|.|+.+|.+
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~~~-~~~-~~~~~~i~iSAktg~Gi~eL~~ 376 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSL-EYP-ENITQIVHTAAAQKQGIDSLET 376 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGSTTC-CCC-TTCCCEEEEBTTTTBSHHHHHH
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhHHH-HHh-ccCCcEEEEECCCCCCHHHHHH
Confidence 34788999999999998777666666666677899999999999876543210 000 0245789999999999999887
Q ss_pred HHHHh
Q 017132 196 LAKAL 200 (376)
Q Consensus 196 ~l~~l 200 (376)
.+.+.
T Consensus 377 ~i~~~ 381 (462)
T 3geh_A 377 AILEI 381 (462)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 290
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.49 E-value=4.2e-05 Score=83.88 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=36.3
Q ss_pred CceEEeEeecCCCCcchhhhhhhhccc----c-----------cccCCCCceeEEEEEEe---CCeEEEEeCCCCc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKRRM----C-----------PAAPRPGVTRVLKWVRF---GKDLEFLDSPGII 273 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~~~----~-----------~v~~~pg~T~~~~~~~~---~~~i~l~DTpG~i 273 (376)
..++|+++|.+|+|||||+|+|++... . ..+...|+|.+...+.+ +..+.++||||..
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH
Confidence 457899999999999999999986310 0 11235677776533333 4579999999974
No 291
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.49 E-value=0.00012 Score=61.41 Aligned_cols=88 Identities=16% Similarity=0.005 Sum_probs=52.7
Q ss_pred HHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEee
Q 017132 113 ELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSN 183 (376)
Q Consensus 113 ~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iS 183 (376)
.....+..+|.++.|+|..++.+..+ ..+..+. .+.|.++|.||+|+.+... ...-.......+..++.+|
T Consensus 65 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 144 (166)
T 3q72_A 65 LPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETS 144 (166)
T ss_dssp --------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECB
T ss_pred hhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEec
Confidence 33456889999999999887543211 1112222 2579999999999985432 1111223344567889999
Q ss_pred CcCCcchhhhhHHHHHh
Q 017132 184 GQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 184 a~~g~gi~~L~~~l~~l 200 (376)
+++|.|+.++.+.+.+.
T Consensus 145 a~~~~gi~~l~~~l~~~ 161 (166)
T 3q72_A 145 AALHHNVQALFEGVVRQ 161 (166)
T ss_dssp GGGTBSHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 99999999887766543
No 292
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.49 E-value=4.6e-05 Score=67.87 Aligned_cols=85 Identities=9% Similarity=-0.050 Sum_probs=58.3
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcc
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMG 189 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~g 189 (376)
...+..+|+++.|+|+..+.+..+. .+.....+.|+++|.||+|+.+.........+....+..++.+|+++|.|
T Consensus 82 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 161 (221)
T 3gj0_A 82 DGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYN 161 (221)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 3567899999999999875432221 11122237899999999999765432222233445577899999999999
Q ss_pred hhhhhHHHHH
Q 017132 190 TMKLSRLAKA 199 (376)
Q Consensus 190 i~~L~~~l~~ 199 (376)
+.++.+.+.+
T Consensus 162 i~~l~~~l~~ 171 (221)
T 3gj0_A 162 FEKPFLWLAR 171 (221)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988766544
No 293
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.49 E-value=4.3e-05 Score=80.51 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=35.0
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccc-----c------ccC------CCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----P------AAP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-----~------v~~------~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
..+|+|+|.+|+|||||+|+|+..... . +.+ ..|.|.......+ +..+.|+||||...
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 467999999999999999999842111 1 111 4466655432222 45789999999964
No 294
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.49 E-value=0.00012 Score=72.27 Aligned_cols=56 Identities=27% Similarity=0.251 Sum_probs=35.3
Q ss_pred eEEeEeecCCCCcchhhhhhhhccc-----ccccCCCCceeEEEEEEe--CCeEEEEeCCCCcC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRRM-----CPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIP 274 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~~-----~~v~~~pg~T~~~~~~~~--~~~i~l~DTpG~i~ 274 (376)
..++|+|.+|||||||||+|+|... +.++. .-+|+....... ..++.+.|+||+-.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g-~~~t~~~~v~q~~~~~~ltv~D~~g~~~ 132 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGV-VEVTMERHPYKHPNIPNVVFWDLPGIGS 132 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----CCCEEEECSSCTTEEEEECCCGGG
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECC-eecceeEEeccccccCCeeehHhhcccc
Confidence 4699999999999999999998321 11211 123332212221 24689999999964
No 295
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.48 E-value=8.1e-05 Score=63.64 Aligned_cols=85 Identities=16% Similarity=-0.012 Sum_probs=56.6
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCCHHhH--------------HHHHHHHHHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADR--------------NAWATYFAKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~~~l----~~kp~ilVlNK~DL~~~~~~--------------~~w~~~~~~~ 175 (376)
..+..+|+++.|+|+.++.+..+. .+...+ .+.|.++|.||+|+.+.... ..........
T Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (186)
T 1mh1_A 72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 151 (186)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhc
Confidence 457899999999999765432221 121111 27899999999999764321 1122233344
Q ss_pred Cc-eEEEeeCcCCcchhhhhHHHHHh
Q 017132 176 GT-KVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 176 g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
+. .++.+|+++|.|+.++.+.+.+.
T Consensus 152 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 177 (186)
T 1mh1_A 152 GAVKYLECSALTQRGLKTVFDEAIRA 177 (186)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCcEEEEecCCCccCHHHHHHHHHHH
Confidence 54 78999999999999887766544
No 296
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.48 E-value=5.1e-05 Score=76.54 Aligned_cols=107 Identities=11% Similarity=0.016 Sum_probs=67.0
Q ss_pred cCCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccC
Q 017132 86 LDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNRED 158 (376)
Q Consensus 86 ~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-----~~kp~ilVlNK~D 158 (376)
.+..+.+|| ++.| ..........++.+|+||.|+|+.++.+..+ ..+..++ .++|+++|+||+|
T Consensus 364 ~~~~~~l~D---t~G~------~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 434 (497)
T 3lvq_E 364 KNVKFNVWD---VGGQ------DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQD 434 (497)
T ss_dssp SSCEEEEEE---ECCC------GGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCS
T ss_pred CCEEEEEEE---CCCc------HHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCC
Confidence 345666776 2222 2222233467899999999999987543221 2233332 2679999999999
Q ss_pred CCCHHhHHHHHHHHHH-----hCceEEEeeCcCCcchhhhhHHHHHhh
Q 017132 159 MISMADRNAWATYFAK-----QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 159 L~~~~~~~~w~~~~~~-----~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
+.+........+.+.. .+..++++|+++|.|+.++.+.+.+..
T Consensus 435 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 482 (497)
T 3lvq_E 435 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 482 (497)
T ss_dssp SSSCCCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred CCcCCCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9764332322222211 123588999999999999887776544
No 297
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.48 E-value=0.00016 Score=61.36 Aligned_cols=86 Identities=14% Similarity=0.047 Sum_probs=57.5
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCc--HHHHHH---h--cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCc
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQ 185 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~--~~l~~~---l--~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~ 185 (376)
...+..+|.++.|+|..++.+..+ ..+..+ . .+.|.++|+||+|+.+... ......+....+..++.+|++
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 154 (181)
T 2fn4_A 75 EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAK 154 (181)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCC
Confidence 356788999999999887533211 112222 1 2679999999999976432 122223334456788999999
Q ss_pred CCcchhhhhHHHHHh
Q 017132 186 LGMGTMKLSRLAKAL 200 (376)
Q Consensus 186 ~g~gi~~L~~~l~~l 200 (376)
.|.|+.++.+.+.+.
T Consensus 155 ~~~gv~~l~~~l~~~ 169 (181)
T 2fn4_A 155 LRLNVDEAFEQLVRA 169 (181)
T ss_dssp TTBSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999887766544
No 298
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.48 E-value=0.00015 Score=62.68 Aligned_cols=100 Identities=15% Similarity=0.127 Sum_probs=61.4
Q ss_pred CcEEEEcCCCCCcccChhHHHHHH-HHHHHHhhhcCeEEEEEecCCCCCCCc--H---HHHHHh--cCCCeEEEEEccCC
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTE-KELKDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWL--GNRKRILVLNREDM 159 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~-k~l~~vidr~dlILeV~DaR~p~~~~~--~---~l~~~l--~~kp~ilVlNK~DL 159 (376)
..+.+|| + ||+. ... ......+..+|+++.|+|+..+.+... . ++.... .+.|.++|+||+|+
T Consensus 69 ~~~~l~D---t-----~G~~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 139 (189)
T 1z06_A 69 IKIQLWD---T-----AGQE-RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139 (189)
T ss_dssp EEEEEEE---C-----CCSH-HHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTC
T ss_pred EEEEEEE---C-----CCch-hhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 4577777 2 4433 333 344567899999999999986533211 1 122222 26799999999999
Q ss_pred CCHHh--HHHHHHHHHHhCceEEEeeCcCC---cchhhhhHH
Q 017132 160 ISMAD--RNAWATYFAKQGTKVIFSNGQLG---MGTMKLSRL 196 (376)
Q Consensus 160 ~~~~~--~~~w~~~~~~~g~~vi~iSa~~g---~gi~~L~~~ 196 (376)
.+..+ ......+....+..++.+|++.| .|+.++.+.
T Consensus 140 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~ 181 (189)
T 1z06_A 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMT 181 (189)
T ss_dssp GGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHH
T ss_pred cccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHH
Confidence 75422 11222233445678899999999 555554433
No 299
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.48 E-value=0.00016 Score=66.37 Aligned_cols=80 Identities=10% Similarity=-0.001 Sum_probs=54.1
Q ss_pred hcCeEEEEEecCCC--CCCCc--HHHHHHh-----cCCCeEEEEEccCCCCHHhHHHHHHHHHH-hCceEEEeeCcCCcc
Q 017132 120 LMDVVIEVRDARIP--LSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK-QGTKVIFSNGQLGMG 189 (376)
Q Consensus 120 r~dlILeV~DaR~p--~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~w~~~~~~-~g~~vi~iSa~~g~g 189 (376)
.+|+++.|+|+.++ .+..+ ..+..+. .+.|.++|.||+|+.+........++... .+..++.+|+++|.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 69999999999876 33221 1111111 36899999999999876655444333333 256788999999999
Q ss_pred hhhhhHHHHH
Q 017132 190 TMKLSRLAKA 199 (376)
Q Consensus 190 i~~L~~~l~~ 199 (376)
+.++.+.+.+
T Consensus 242 v~elf~~l~~ 251 (255)
T 3c5h_A 242 VDLAFSTLVQ 251 (255)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988766543
No 300
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.48 E-value=0.00031 Score=59.76 Aligned_cols=81 Identities=15% Similarity=0.019 Sum_probs=53.9
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh----cCCCeEEEEEccCCC-------CHHhHHHHHHHHHHh-Cce
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL----GNRKRILVLNREDMI-------SMADRNAWATYFAKQ-GTK 178 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~-----l~~~l----~~kp~ilVlNK~DL~-------~~~~~~~w~~~~~~~-g~~ 178 (376)
..+..+|+++.|+|..++.+..+.. +.... .+.|+++|.||+|+. +.++...| .... +..
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~---~~~~~~~~ 144 (178)
T 2iwr_A 68 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARAL---XADMKRCS 144 (178)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHH---HHHHSSEE
T ss_pred HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHH---HHhhcCCe
Confidence 4567899999999998765332211 22222 256899999999993 22333333 2333 567
Q ss_pred EEEeeCcCCcchhhhhHHHHH
Q 017132 179 VIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~ 199 (376)
++.+|+++|.|+.++.+.+.+
T Consensus 145 ~~~~Sa~~~~~i~~lf~~l~~ 165 (178)
T 2iwr_A 145 YYETXATYGLNVDRVFQEVAQ 165 (178)
T ss_dssp EEEEBTTTTBTHHHHHHHHHH
T ss_pred EEEEeccccCCHHHHHHHHHH
Confidence 889999999999988766544
No 301
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.47 E-value=0.00015 Score=63.25 Aligned_cols=85 Identities=12% Similarity=-0.055 Sum_probs=55.4
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--H----HHHHhcCCCeEEEEEccCCCCHHh--------------HHHHHHHHHHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--L----MDQWLGNRKRILVLNREDMISMAD--------------RNAWATYFAKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~----l~~~l~~kp~ilVlNK~DL~~~~~--------------~~~w~~~~~~~ 175 (376)
..+..+|+++.|+|+.++.+..+. . +.....+.|.++|.||+|+.+... ......+....
T Consensus 87 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (201)
T 2q3h_A 87 LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEI 166 (201)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhc
Confidence 457889999999999875432221 1 111123789999999999975311 11111222334
Q ss_pred Cc-eEEEeeCcCCcchhhhhHHHHHh
Q 017132 176 GT-KVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 176 g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
+. .++.+|+++|.|+.++.+.+.+.
T Consensus 167 ~~~~~~~~Sa~~g~gi~~l~~~l~~~ 192 (201)
T 2q3h_A 167 KAASYIECSALTQKNLKEVFDAAIVA 192 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCcEEEEEecCCCCCHHHHHHHHHHH
Confidence 54 78899999999999887766543
No 302
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.47 E-value=0.00014 Score=74.11 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=46.9
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM 162 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~ 162 (376)
+..+.+|| + ||| ..+.......+..+|.++.|+|+..+.......+...+ .+.|+++|+||+|+...
T Consensus 81 ~~~i~liD---T-----PG~-~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 81 DYLINLLD---T-----PGH-ADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp TEEEEEEC---C-----CCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCS
T ss_pred CEEEEEEE---C-----CCc-hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccc
Confidence 34456666 2 555 33445566778999999999999987655444444333 36899999999999753
No 303
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.46 E-value=7.3e-05 Score=66.04 Aligned_cols=89 Identities=11% Similarity=0.009 Sum_probs=58.1
Q ss_pred HHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHH---h-cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEee
Q 017132 112 KELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQW---L-GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSN 183 (376)
Q Consensus 112 k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~---l-~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iS 183 (376)
......+..+|+++.|+|+..+.+..+ ..+..+ . ...|.++|.||+|+.+... ......+....+..++.+|
T Consensus 90 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 169 (201)
T 2ew1_A 90 SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETS 169 (201)
T ss_dssp HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEe
Confidence 334466899999999999876543211 111111 1 2578999999999975321 1222233345577889999
Q ss_pred CcCCcchhhhhHHHHHh
Q 017132 184 GQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 184 a~~g~gi~~L~~~l~~l 200 (376)
+++|.|+.++.+.+.+.
T Consensus 170 a~~g~gv~~l~~~l~~~ 186 (201)
T 2ew1_A 170 AKESDNVEKLFLDLACR 186 (201)
T ss_dssp TTTCTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999887665443
No 304
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.46 E-value=0.0001 Score=62.58 Aligned_cols=103 Identities=7% Similarity=-0.023 Sum_probs=63.8
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH-----HHHHHh-----cCCCeEEEEEcc
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP-----LMDQWL-----GNRKRILVLNRE 157 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~-----~l~~~l-----~~kp~ilVlNK~ 157 (376)
..+.+|| + ||+ ..........+..+|.++.|+|+.++.+..+. ++.... .+.|.++|+||+
T Consensus 56 ~~~~i~D---t-----~G~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~ 126 (177)
T 1wms_A 56 VTMQIWD---T-----AGQ-ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126 (177)
T ss_dssp EEEEEEE---C-----CCC-GGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECT
T ss_pred EEEEEEe---C-----CCc-hhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECC
Confidence 4567777 2 332 22233334668899999999999875432211 122222 356899999999
Q ss_pred CCCCHHh-HHHHHHHHH-HhCceEEEeeCcCCcchhhhhHHHHH
Q 017132 158 DMISMAD-RNAWATYFA-KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 158 DL~~~~~-~~~w~~~~~-~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
|+..... .....++.. ..+..++.+|+++|.|+.++.+.+.+
T Consensus 127 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 170 (177)
T 1wms_A 127 DISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVR 170 (177)
T ss_dssp TCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHH
Confidence 9974321 122222333 33567899999999999888766543
No 305
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.46 E-value=0.00025 Score=61.46 Aligned_cols=86 Identities=13% Similarity=0.082 Sum_probs=57.2
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHh----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCc
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQ 185 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~ 185 (376)
....+..+|+++.|+|+..+.+..+ ..+..+. .+.|+++|+||+|+.+... ......+..+.+..++.+|++
T Consensus 87 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 166 (191)
T 2a5j_A 87 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAK 166 (191)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 3456789999999999976543221 1111221 2678999999999975321 122223344557788999999
Q ss_pred CCcchhhhhHHHHH
Q 017132 186 LGMGTMKLSRLAKA 199 (376)
Q Consensus 186 ~g~gi~~L~~~l~~ 199 (376)
+|.|+.++.+.+.+
T Consensus 167 ~~~gi~~l~~~l~~ 180 (191)
T 2a5j_A 167 TACNVEEAFINTAK 180 (191)
T ss_dssp TCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 99999988766543
No 306
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.46 E-value=0.00019 Score=62.17 Aligned_cols=83 Identities=12% Similarity=0.020 Sum_probs=55.1
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCCCCHHh--------------HHHHHHHHHHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMAD--------------RNAWATYFAKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~------~l~~~l~~kp~ilVlNK~DL~~~~~--------------~~~w~~~~~~~ 175 (376)
..+..+|+++.|+|+.++.+..+. ++.....+.|.++|.||+|+.+... .....++....
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 164 (194)
T 2atx_A 85 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEI 164 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHH
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHc
Confidence 457889999999998775432211 1112223789999999999976421 11122223344
Q ss_pred Cc-eEEEeeCcCCcchhhhhHHHH
Q 017132 176 GT-KVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 176 g~-~vi~iSa~~g~gi~~L~~~l~ 198 (376)
+. .++.+|+++|.|+.++.+.+.
T Consensus 165 ~~~~~~~~Sa~~g~gi~~l~~~l~ 188 (194)
T 2atx_A 165 GACCYVECSALTQKGLKTVFDEAI 188 (194)
T ss_dssp TCSCEEECCTTTCTTHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHH
Confidence 54 788999999999998876654
No 307
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.45 E-value=0.00037 Score=57.90 Aligned_cols=85 Identities=11% Similarity=-0.002 Sum_probs=56.7
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCc--H---HHHHHhc--CCCeEEEEEccCCCCHHh-HHHHHHHHHHhCceEEEeeCcC
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTH--P---LMDQWLG--NRKRILVLNREDMISMAD-RNAWATYFAKQGTKVIFSNGQL 186 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~--~---~l~~~l~--~kp~ilVlNK~DL~~~~~-~~~w~~~~~~~g~~vi~iSa~~ 186 (376)
...+..+|.++.|+|+.++.+..+ . ++..... +.|.++|+||+|+.+... .....+...+.+..++.+|++.
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 148 (166)
T 2ce2_X 69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKT 148 (166)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTT
T ss_pred HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCC
Confidence 356788999999999876532211 1 1111222 689999999999986322 1222233345577899999999
Q ss_pred CcchhhhhHHHHH
Q 017132 187 GMGTMKLSRLAKA 199 (376)
Q Consensus 187 g~gi~~L~~~l~~ 199 (376)
|.|+.++.+.+.+
T Consensus 149 ~~gi~~l~~~l~~ 161 (166)
T 2ce2_X 149 RQGVEDAFYTLVR 161 (166)
T ss_dssp CTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999988776643
No 308
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.44 E-value=0.00012 Score=72.88 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=62.1
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC----CcHHHHHH------hcCCCeEEEEEc
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST----THPLMDQW------LGNRKRILVLNR 156 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~----~~~~l~~~------l~~kp~ilVlNK 156 (376)
+..+.+|| .||| ..+.+.+...+..+|.++.|+|+..+... ...+..+. +..++.++|+||
T Consensus 83 ~~~~~iiD--------tpG~-~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK 153 (435)
T 1jny_A 83 KYFFTIID--------APGH-RDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNK 153 (435)
T ss_dssp SCEEEECC--------CSSS-TTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEEC
T ss_pred CeEEEEEE--------CCCc-HHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEc
Confidence 34466666 3676 34556666778999999999999874110 11122221 223568899999
Q ss_pred cCCCCH----Hh----HHHHHHHHHHhC-----ceEEEeeCcCCcchhhh
Q 017132 157 EDMISM----AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (376)
Q Consensus 157 ~DL~~~----~~----~~~w~~~~~~~g-----~~vi~iSa~~g~gi~~L 193 (376)
+|+.+. +. ..+..+++...+ ..++++|++.|.|+.++
T Consensus 154 ~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 154 MDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp GGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 999872 11 223334444444 46889999999998644
No 309
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.44 E-value=0.0002 Score=62.77 Aligned_cols=84 Identities=14% Similarity=0.057 Sum_probs=56.0
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHHH----HhcCCCeEEEEEccCCCCHHhHH--------------HHHHHHHHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQ----WLGNRKRILVLNREDMISMADRN--------------AWATYFAKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~~----~l~~kp~ilVlNK~DL~~~~~~~--------------~w~~~~~~~ 175 (376)
..+..+|+++.|+|+.++.+..+. .+.. ...+.|+++|+||+|+.+..... ...++....
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (201)
T 2gco_A 92 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI 171 (201)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC
Confidence 457899999999998865332211 1111 22378999999999998753221 122223344
Q ss_pred Cc-eEEEeeCcCCcchhhhhHHHHH
Q 017132 176 GT-KVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 176 g~-~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
+. .++.+|++.|.|+.++.+.+.+
T Consensus 172 ~~~~~~~~SA~~g~gi~~l~~~i~~ 196 (201)
T 2gco_A 172 SAFGYLECSAKTKEGVREVFEMATR 196 (201)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 54 7888999999999988776654
No 310
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.44 E-value=3.2e-05 Score=71.51 Aligned_cols=80 Identities=19% Similarity=0.111 Sum_probs=55.9
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHH-HHHHHHHhCceEEEeeCcCCcchhhhhH
Q 017132 119 KLMDVVIEVRDARIPLSTTHPLMDQWLG--NRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (376)
Q Consensus 119 dr~dlILeV~DaR~p~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~-w~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (376)
..+|+|+.|+|+..+ ..+..+..++. +.|.++|+||+|+........ ........|.+++++|+++|.|+.+|.+
T Consensus 82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~ 159 (256)
T 3iby_A 82 LEYDCIINVIDACHL--ERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQ 159 (256)
T ss_dssp SCCSEEEEEEEGGGH--HHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHH
T ss_pred CCCCEEEEEeeCCCc--hhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 889999999999873 22333333333 689999999999875542111 1112234578899999999999999877
Q ss_pred HHHHh
Q 017132 196 LAKAL 200 (376)
Q Consensus 196 ~l~~l 200 (376)
.+.++
T Consensus 160 ~i~~~ 164 (256)
T 3iby_A 160 SLLHC 164 (256)
T ss_dssp HHHTC
T ss_pred HHHhh
Confidence 76543
No 311
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.43 E-value=0.00073 Score=57.86 Aligned_cols=83 Identities=20% Similarity=0.159 Sum_probs=51.6
Q ss_pred hhhcCeEEEEEecCCCCC-----------CCcHHHHHHh--cCCCeEEEEEccCCCCHH--hHHHHHHHHHHh----Cce
Q 017132 118 LKLMDVVIEVRDARIPLS-----------TTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWATYFAKQ----GTK 178 (376)
Q Consensus 118 idr~dlILeV~DaR~p~~-----------~~~~~l~~~l--~~kp~ilVlNK~DL~~~~--~~~~w~~~~~~~----g~~ 178 (376)
.+.+++++.|.|+..... ..+.++...+ .+.|.++|.||+|+.... ..+.+.+.+... ...
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKV 159 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccCCc
Confidence 666789999998753211 0011122222 368999999999998754 233333322110 014
Q ss_pred EEEeeCcCCcchhhhhHHHHHh
Q 017132 179 VIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 179 vi~iSa~~g~gi~~L~~~l~~l 200 (376)
++.+|+++|.|+.++.+.+.+.
T Consensus 160 ~~~~Sa~~~~~v~~l~~~l~~~ 181 (190)
T 2cxx_A 160 FIPISAKFGDNIERLKNRIFEV 181 (190)
T ss_dssp EEECCTTTCTTHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHh
Confidence 7899999999999887766544
No 312
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.42 E-value=0.00037 Score=67.82 Aligned_cols=96 Identities=18% Similarity=0.063 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCe-EEEEE-ccCCCCHHhHHH----HHHHHHHh
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKR-ILVLN-REDMISMADRNA----WATYFAKQ 175 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~-ilVlN-K~DL~~~~~~~~----w~~~~~~~ 175 (376)
||| ..+.+.+...+..+|+++.|+| .........+...++ .+.|. ++++| |+|+ +.+.... ..+++.+.
T Consensus 68 PGh-~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~ 144 (370)
T 2elf_A 68 HSY-PKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT 144 (370)
T ss_dssp TTT-TTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS
T ss_pred CCh-HHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc
Confidence 676 3455666677899999999999 543322112222221 35677 99999 9999 6543322 22223222
Q ss_pred C---ceEEE--eeCcC---CcchhhhhHHHHHhhh
Q 017132 176 G---TKVIF--SNGQL---GMGTMKLSRLAKALAS 202 (376)
Q Consensus 176 g---~~vi~--iSa~~---g~gi~~L~~~l~~l~~ 202 (376)
+ .++++ +||++ +.|+.+|.+.+.+..+
T Consensus 145 ~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 145 VLQDWECISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred CCCceEEEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 2 57899 99999 9999998877766543
No 313
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.41 E-value=0.00012 Score=63.48 Aligned_cols=85 Identities=14% Similarity=0.045 Sum_probs=56.5
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HH----HHHhcCCCeEEEEEccCCCCHH----hHHHHHHHHHHhCce-EEEeeC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LM----DQWLGNRKRILVLNREDMISMA----DRNAWATYFAKQGTK-VIFSNG 184 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l----~~~l~~kp~ilVlNK~DL~~~~----~~~~w~~~~~~~g~~-vi~iSa 184 (376)
..+..+|+++.|+|+.++.+..+. .+ .....+.|+++|.||+|+.+.. ......++....+.. ++.+|+
T Consensus 90 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 169 (194)
T 3reg_A 90 LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASS 169 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBT
T ss_pred hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeec
Confidence 467889999999999875432221 11 2222368999999999997531 112222334445655 889999
Q ss_pred cCCcchhhhhHHHHHh
Q 017132 185 QLGMGTMKLSRLAKAL 200 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~l 200 (376)
++|.|+.++.+.+.+.
T Consensus 170 ~~~~gi~~l~~~l~~~ 185 (194)
T 3reg_A 170 VAKIGLNEVFEKSVDC 185 (194)
T ss_dssp TTTBSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999887765543
No 314
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.41 E-value=0.00021 Score=73.86 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHH-HH-hcCCCeEEEEEccCCCCHHhHHHHHHHHHH-hCc---
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMD-QW-LGNRKRILVLNREDMISMADRNAWATYFAK-QGT--- 177 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~-~~-l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~-~g~--- 177 (376)
|||. .+..++...+..+|.++.|+|+..+......... .. ..+.|+++|+||+|+..... ....+.+.+ .+.
T Consensus 81 PGh~-dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~-~~v~~el~~~lg~~~~ 158 (600)
T 2ywe_A 81 PGHV-DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADV-DRVKKQIEEVLGLDPE 158 (600)
T ss_dssp CCSG-GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCH-HHHHHHHHHTSCCCGG
T ss_pred CCcH-hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCH-HHHHHHHHHhhCCCcc
Confidence 6763 3555666778999999999999887543322221 11 24789999999999976431 122223332 232
Q ss_pred eEEEeeCcCCcchhhhhHHHHHhh
Q 017132 178 KVIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 178 ~vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
.++++|+++|.|+.+|.+.+.+..
T Consensus 159 ~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 159 EAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp GCEECBTTTTBSHHHHHHHHHHHS
T ss_pred cEEEEEeecCCCchHHHHHHHHhc
Confidence 489999999999998877665443
No 315
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.41 E-value=0.00026 Score=69.50 Aligned_cols=94 Identities=14% Similarity=0.049 Sum_probs=60.1
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCC-H
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMIS-M 162 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp-~ilVlNK~DL~~-~ 162 (376)
+..+.++| .|||. .+.+.+...+..+|+++.|+|+..+......+...++ .+.| .++++||+|+.+ .
T Consensus 65 ~~~~~iiD--------tpG~~-~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~ 135 (397)
T 1d2e_A 65 ARHYAHTD--------CPGHA-DYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDS 135 (397)
T ss_dssp SCEEEEEE--------CSSHH-HHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCH
T ss_pred CeEEEEEE--------CCChH-HHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCH
Confidence 34566666 47874 4556666778999999999999886533222222222 2567 579999999985 3
Q ss_pred HhH----HHHHHHHHHhC-----ceEEEeeCcCCcc
Q 017132 163 ADR----NAWATYFAKQG-----TKVIFSNGQLGMG 189 (376)
Q Consensus 163 ~~~----~~w~~~~~~~g-----~~vi~iSa~~g~g 189 (376)
+.. .+..+++...+ .+++++|+++|.+
T Consensus 136 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n 171 (397)
T 1d2e_A 136 EMVELVELEIRELLTEFGYKGEETPIIVGSALCALE 171 (397)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhccc
Confidence 211 22334444444 4788999988653
No 316
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=97.40 E-value=7e-05 Score=77.51 Aligned_cols=58 Identities=26% Similarity=0.384 Sum_probs=29.9
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccc--------------cCCCCceeEEEEEEe------C--CeEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPA--------------APRPGVTRVLKWVRF------G--KDLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v--------------~~~pg~T~~~~~~~~------~--~~i~l~DTpG~i~ 274 (376)
..+|+|+|.+|+|||||+|+|+....... +...|.|.......+ + ..+.|+||||...
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 35799999999999999999986321111 113566765433222 1 2578999999864
No 317
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.38 E-value=7.5e-05 Score=69.01 Aligned_cols=80 Identities=21% Similarity=0.182 Sum_probs=54.9
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHH-HHh-cCCCeEEEEEccCCCCHHhHHH-HHHHHHHhCceEEEeeCcCCcchhhhhH
Q 017132 119 KLMDVVIEVRDARIPLSTTHPLMD-QWL-GNRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLSR 195 (376)
Q Consensus 119 dr~dlILeV~DaR~p~~~~~~~l~-~~l-~~kp~ilVlNK~DL~~~~~~~~-w~~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (376)
..+|+|+.|+|+..... ...+. ++. .+.|.++|+||+|+........ ........|.+++++|+++|.|+.++.+
T Consensus 82 ~~~d~ii~V~D~t~~~~--~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~ 159 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQ--SLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKE 159 (258)
T ss_dssp SCCSEEEEEEETTSCHH--HHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHH
T ss_pred cCCCEEEEEeCCCchhh--HHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHH
Confidence 68999999999986422 22222 222 3789999999999865432111 1122334578899999999999999887
Q ss_pred HHHHh
Q 017132 196 LAKAL 200 (376)
Q Consensus 196 ~l~~l 200 (376)
.+.+.
T Consensus 160 ~i~~~ 164 (258)
T 3a1s_A 160 KIVEY 164 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76554
No 318
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.38 E-value=0.00021 Score=62.37 Aligned_cols=85 Identities=11% Similarity=-0.007 Sum_probs=56.3
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHH---HHh-----cCCCeEEEEEccCCCCHHh-HHHHHHHHH-HhCceEEEee
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMD---QWL-----GNRKRILVLNREDMISMAD-RNAWATYFA-KQGTKVIFSN 183 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~---~~l-----~~kp~ilVlNK~DL~~~~~-~~~w~~~~~-~~g~~vi~iS 183 (376)
..+..+|+++.|+|+.++.+..+. .+. ... .+.|+++|+||+|+..... ......+.. ..+..++.+|
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (207)
T 1vg8_A 76 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETS 155 (207)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECB
T ss_pred HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEe
Confidence 457889999999999875432211 111 222 3579999999999984322 122222333 3456789999
Q ss_pred CcCCcchhhhhHHHHHh
Q 017132 184 GQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 184 a~~g~gi~~L~~~l~~l 200 (376)
+++|.|+.++.+.+.+.
T Consensus 156 a~~g~gi~~l~~~l~~~ 172 (207)
T 1vg8_A 156 AKEAINVEQAFQTIARN 172 (207)
T ss_dssp TTTTBSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999987766544
No 319
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.37 E-value=8.4e-05 Score=70.31 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=21.5
Q ss_pred CceEEeEeecCCCCcchhhhhhhhc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
..++|++||-+|||||||+|+|.+.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999875
No 320
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.49 E-value=2.6e-05 Score=68.56 Aligned_cols=94 Identities=16% Similarity=0.025 Sum_probs=58.7
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHhc----CCCeEEEEEccCCCCHHhH------------
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDMISMADR------------ 165 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~--~l~~~l~----~kp~ilVlNK~DL~~~~~~------------ 165 (376)
||+ ..........+..+|+++.|+|+.++.+..+. .+...+. +.|.++|.||+|+.+....
T Consensus 86 ~G~-~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v 164 (204)
T 3th5_A 86 AGQ-EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 164 (204)
Confidence 454 23333444568899999999998876543332 1222222 6789999999999864311
Q ss_pred --HHHHHHHHHhCc-eEEEeeCcCCcchhhhhHHHH
Q 017132 166 --NAWATYFAKQGT-KVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 166 --~~w~~~~~~~g~-~vi~iSa~~g~gi~~L~~~l~ 198 (376)
.....+....+. .++.+|+++|.|+.++.+.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~ 200 (204)
T 3th5_A 165 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200 (204)
Confidence 111122223343 677899999999988766543
No 321
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.35 E-value=7.8e-05 Score=77.41 Aligned_cols=97 Identities=19% Similarity=0.218 Sum_probs=60.6
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCC-------CCCcHHHHHH---hcCCCeEEEEEcc
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------STTHPLMDQW---LGNRKRILVLNRE 157 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~-------~~~~~~l~~~---l~~kp~ilVlNK~ 157 (376)
..+.+|| -||| ..+.+.+...+..+|++|.|+|+..+. .....+...+ +..+++++|+||+
T Consensus 245 ~~~~iiD--------TPG~-e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKi 315 (611)
T 3izq_1 245 ANFTIVD--------APGH-RDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKM 315 (611)
T ss_dssp CEEEEEE--------CCSS-SCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECT
T ss_pred ceEEEEE--------CCCC-cccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecc
Confidence 3456666 2666 345555666789999999999998641 1111111111 2235689999999
Q ss_pred CCCCH--Hh----HHHHHHHHHHhC-----ceEEEeeCcCCcchhhh
Q 017132 158 DMISM--AD----RNAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (376)
Q Consensus 158 DL~~~--~~----~~~w~~~~~~~g-----~~vi~iSa~~g~gi~~L 193 (376)
|+.+. .. ......++.+.| ..++++||++|.|+.++
T Consensus 316 Dl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 316 DNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred cccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 99872 11 222333344444 46889999999999765
No 322
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.34 E-value=0.00011 Score=67.57 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=22.6
Q ss_pred CceEEeEeecC---------CCCcchhhhhhhhc
Q 017132 216 RAVRAGIVGYP---------NVGKSSLINRLLKR 240 (376)
Q Consensus 216 ~~~~v~lvG~p---------NvGKSTLiN~L~~~ 240 (376)
..++|++||.+ |||||||+|+|++.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 45799999999 99999999999973
No 323
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.34 E-value=0.00019 Score=63.21 Aligned_cols=84 Identities=17% Similarity=-0.013 Sum_probs=55.8
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCCHHhHH--------------HHHHHHHHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMADRN--------------AWATYFAKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~~~l----~~kp~ilVlNK~DL~~~~~~~--------------~w~~~~~~~ 175 (376)
..+..+|+++.|+|+.++.+..+. .+...+ .+.|+++|.||+|+.+..... ....+....
T Consensus 97 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 176 (204)
T 4gzl_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 176 (204)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhc
Confidence 467899999999999875433221 122222 278999999999997654311 122223334
Q ss_pred C-ceEEEeeCcCCcchhhhhHHHHH
Q 017132 176 G-TKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 176 g-~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
+ ..++.+|+++|.|+.++.+.+.+
T Consensus 177 ~~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 177 GAVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CCcEEEEeeCCCCCCHHHHHHHHHH
Confidence 4 35888999999999988766543
No 324
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.34 E-value=0.00037 Score=60.96 Aligned_cols=84 Identities=18% Similarity=0.032 Sum_probs=55.8
Q ss_pred HHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL 186 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~ 186 (376)
..+..+|+++.|+|..++.+..+ ..+..+. ...|+++|.||+|+.+... ......+....+..++.+|++.
T Consensus 92 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~ 171 (195)
T 3cbq_A 92 HCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL 171 (195)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred HhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCC
Confidence 45778999999999876543211 2222222 2679999999999975321 1222233344567888999999
Q ss_pred CcchhhhhHHHHH
Q 017132 187 GMGTMKLSRLAKA 199 (376)
Q Consensus 187 g~gi~~L~~~l~~ 199 (376)
|.|+.++.+.+.+
T Consensus 172 ~~~v~~lf~~l~~ 184 (195)
T 3cbq_A 172 HHNTRELFEGAVR 184 (195)
T ss_dssp TBSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999888766543
No 325
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.33 E-value=0.00029 Score=70.72 Aligned_cols=90 Identities=17% Similarity=0.135 Sum_probs=50.6
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCC--------CCCcHHHHHH-hcCCC-eEEEEEccCCCC----HHh----
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPL--------STTHPLMDQW-LGNRK-RILVLNREDMIS----MAD---- 164 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~--------~~~~~~l~~~-l~~kp-~ilVlNK~DL~~----~~~---- 164 (376)
.||| ..+.+.+...+..+|+++.|+|+..+. ......+... ..+.| .++|+||+|+.+ .+.
T Consensus 128 tPGh-~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i 206 (467)
T 1r5b_A 128 APGH-KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKEC 206 (467)
T ss_dssp CCC------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHH
T ss_pred CCCc-HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHH
Confidence 4787 455666667789999999999999763 1111112211 12555 899999999964 221
Q ss_pred HHHHHHHHHHh-C------ceEEEeeCcCCcchhhh
Q 017132 165 RNAWATYFAKQ-G------TKVIFSNGQLGMGTMKL 193 (376)
Q Consensus 165 ~~~w~~~~~~~-g------~~vi~iSa~~g~gi~~L 193 (376)
..+..+++... | ..++++|+++|.|+.++
T Consensus 207 ~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l 242 (467)
T 1r5b_A 207 VDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR 242 (467)
T ss_dssp HHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred HHHHHHHHHHhcCCCccCCceEEecccccccccccc
Confidence 12233444444 3 35788999999998754
No 326
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.33 E-value=0.00019 Score=62.42 Aligned_cols=83 Identities=11% Similarity=0.099 Sum_probs=55.0
Q ss_pred HHhhhcCeEEEEEecCCCCCCCc--HHHHHHh-----cCCCeEEEEEccCCCCHHhHHHHHHHHHH------------hC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTH--PLMDQWL-----GNRKRILVLNREDMISMADRNAWATYFAK------------QG 176 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~w~~~~~~------------~g 176 (376)
..+..+|+++.|+|+.++.+..+ ..+..++ .+.|.++|.||+|+......++..+.+.. .+
T Consensus 86 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRP 165 (190)
T ss_dssp GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCC
T ss_pred HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccce
Confidence 45789999999999987643221 2233332 36799999999999753222333333321 23
Q ss_pred ceEEEeeCcCCcchhhhhHHHH
Q 017132 177 TKVIFSNGQLGMGTMKLSRLAK 198 (376)
Q Consensus 177 ~~vi~iSa~~g~gi~~L~~~l~ 198 (376)
..++.+|+++|.|+.++.+.+.
T Consensus 166 ~~~~~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 166 VEVFMCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp EEEEECBTTTTBSHHHHHHHHH
T ss_pred EEEEEeECCcCCCHHHHHHHHH
Confidence 4678899999999988876654
No 327
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.31 E-value=7.8e-05 Score=73.84 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=23.7
Q ss_pred CCceEEeEeecCCCCcchhhhhhhhcc
Q 017132 215 PRAVRAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 215 ~~~~~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
+..++|+|||-+|||||||+|.|++..
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCC
Confidence 345789999999999999999999864
No 328
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.31 E-value=0.00032 Score=61.44 Aligned_cols=85 Identities=9% Similarity=-0.061 Sum_probs=56.8
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcCC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG 187 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~~~l----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~g 187 (376)
..+..+|+++.|+|+..+.+.... .+..+. ...|.++|+||+|+.+... ......+....+..++++|++.|
T Consensus 76 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 155 (206)
T 2bcg_Y 76 SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDS 155 (206)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTC
T ss_pred HhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 557899999999998875432211 111111 2578999999999986431 12222333455778999999999
Q ss_pred cchhhhhHHHHHh
Q 017132 188 MGTMKLSRLAKAL 200 (376)
Q Consensus 188 ~gi~~L~~~l~~l 200 (376)
.|+.++.+.+.+.
T Consensus 156 ~gi~~l~~~l~~~ 168 (206)
T 2bcg_Y 156 TNVEDAFLTMARQ 168 (206)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999887766543
No 329
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.30 E-value=0.0001 Score=74.71 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.1
Q ss_pred CceEEeEeecCCCCcchhhhhhh
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLL 238 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~ 238 (376)
.+..|+++|.|||||||++|.|+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999998
No 330
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.30 E-value=5.7e-05 Score=78.12 Aligned_cols=58 Identities=29% Similarity=0.441 Sum_probs=32.6
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccccc--------------cCCCCceeEEEEEEe------C--CeEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMCPA--------------APRPGVTRVLKWVRF------G--KDLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~~v--------------~~~pg~T~~~~~~~~------~--~~i~l~DTpG~i~ 274 (376)
..+|+++|.+|+|||||+|+|+....... +...|.|...+...+ + ..+.|+||||...
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 35799999999999999999985321111 112455554221111 1 2567999999975
No 331
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.29 E-value=0.00066 Score=61.87 Aligned_cols=112 Identities=16% Similarity=0.140 Sum_probs=66.2
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHH-H----HH--HhcCCCeEEEEEccCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPL-M----DQ--WLGNRKRILVLNREDM 159 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~-l----~~--~l~~kp~ilVlNK~DL 159 (376)
+.|++++| +|.+--+..+..+.+.+.+.+.. ++|+.++|+.......+.. . .. ...+.|.++|+||+|+
T Consensus 108 ~~d~iiiD---tpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~ 183 (262)
T 1yrb_A 108 ENDYVLID---TPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDL 183 (262)
T ss_dssp HCSEEEEE---CCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGG
T ss_pred cCCEEEEe---CCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccc
Confidence 46899999 34441111011113334445566 8999999987543332211 0 01 1126899999999999
Q ss_pred CCHHhHH---HHHH-------H------------------HHHhC--ceEEEeeCcCCcchhhhhHHHHHhhh
Q 017132 160 ISMADRN---AWAT-------Y------------------FAKQG--TKVIFSNGQLGMGTMKLSRLAKALAS 202 (376)
Q Consensus 160 ~~~~~~~---~w~~-------~------------------~~~~g--~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (376)
.+..+.. .+.+ . ..+.+ ..++++|+++|.|+.+|.+.+.+..+
T Consensus 184 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 184 LSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 8765322 2211 1 12223 36889999999999998887765543
No 332
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.29 E-value=0.0008 Score=74.00 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=64.1
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCC-eEEEEEccCCCCHHh-H----HHHHHHHHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRK-RILVLNREDMISMAD-R----NAWATYFAK 174 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp-~ilVlNK~DL~~~~~-~----~~w~~~~~~ 174 (376)
.|||. .+.+.+...+..+|++|.|+|+..+......+....+ .+.| +++|+||+|+.+..+ . .+..+++..
T Consensus 366 TPGHe-dF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~ 444 (1289)
T 3avx_A 366 CPGHA-DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ 444 (1289)
T ss_dssp CCCHH-HHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCChH-HHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHh
Confidence 48884 4566666778999999999999987654433322222 2567 689999999986322 1 223344444
Q ss_pred hC-----ceEEEeeCcCC--------cchhhhhHHHHH
Q 017132 175 QG-----TKVIFSNGQLG--------MGTMKLSRLAKA 199 (376)
Q Consensus 175 ~g-----~~vi~iSa~~g--------~gi~~L~~~l~~ 199 (376)
.+ .+++++|+++| .|+..|.+.+.+
T Consensus 445 ~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~ 482 (1289)
T 3avx_A 445 YDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDS 482 (1289)
T ss_dssp TTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence 44 46899999998 456666666554
No 333
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.27 E-value=0.00028 Score=62.12 Aligned_cols=85 Identities=15% Similarity=0.014 Sum_probs=55.4
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHHHH----hcCCCeEEEEEccCCCCHHhHHHHH--------------HHHHHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQW----LGNRKRILVLNREDMISMADRNAWA--------------TYFAKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~~~----l~~kp~ilVlNK~DL~~~~~~~~w~--------------~~~~~~ 175 (376)
..+..+|+++.|+|+.++.+..+. .+... ..+.|.++|+||+|+.+......+. .+....
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 171 (207)
T 2fv8_A 92 LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRI 171 (207)
T ss_dssp GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhc
Confidence 457889999999998765322111 11111 2378999999999997653222111 112233
Q ss_pred Cc-eEEEeeCcCCcchhhhhHHHHHh
Q 017132 176 GT-KVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 176 g~-~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
+. .++.+|+++|.|+.++.+.+.+.
T Consensus 172 ~~~~~~~~SA~~g~gi~el~~~l~~~ 197 (207)
T 2fv8_A 172 QAYDYLECSAKTKEGVREVFETATRA 197 (207)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCHHHHHHHHHHH
Confidence 44 78889999999999887766543
No 334
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.26 E-value=0.00012 Score=78.86 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.1
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
..+|+|+|.+|+|||||+|+|++..
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~ 43 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRA 43 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998653
No 335
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.25 E-value=0.00026 Score=61.95 Aligned_cols=85 Identities=12% Similarity=-0.056 Sum_probs=56.0
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHHHHh-----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQL 186 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~ 186 (376)
..+..+|+++.|+|+.++.+.... .+..+. .+.|+++|+||+|+.+... ......+....+..++.+|++.
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 170 (201)
T 3oes_A 91 SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARE 170 (201)
T ss_dssp GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTC
T ss_pred HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCC
Confidence 457889999999998865332111 112221 1569999999999975432 1122233345577889999999
Q ss_pred CcchhhhhHHHHHh
Q 017132 187 GMGTMKLSRLAKAL 200 (376)
Q Consensus 187 g~gi~~L~~~l~~l 200 (376)
|.|+.++.+.+.+.
T Consensus 171 ~~~v~~l~~~l~~~ 184 (201)
T 3oes_A 171 NQLTQGIFTKVIQE 184 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 99999887665543
No 336
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.25 E-value=0.00057 Score=59.10 Aligned_cols=80 Identities=9% Similarity=-0.006 Sum_probs=53.4
Q ss_pred HhhhcCeEEEEEecCCCCCCCc-H-HHHHHh-----cCCCeEEEEEccCCC-------CHHhHHHHHHHHHHhC-ceEEE
Q 017132 117 QLKLMDVVIEVRDARIPLSTTH-P-LMDQWL-----GNRKRILVLNREDMI-------SMADRNAWATYFAKQG-TKVIF 181 (376)
Q Consensus 117 vidr~dlILeV~DaR~p~~~~~-~-~l~~~l-----~~kp~ilVlNK~DL~-------~~~~~~~w~~~~~~~g-~~vi~ 181 (376)
.+..+|+++.|+|..++.+..+ . .+..+. .+.|+++|.||+|+. +.++... .....+ ..++.
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~---~~~~~~~~~~~e 158 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARK---LSTDLKRCTYYE 158 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHH---HHHHTTTCEEEE
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHH---HHHHcCCCeEEE
Confidence 6678999999999987543222 1 122221 246899999999994 2223233 333444 67889
Q ss_pred eeCcCCcchhhhhHHHHH
Q 017132 182 SNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 182 iSa~~g~gi~~L~~~l~~ 199 (376)
+|+++|.|+.++.+.+.+
T Consensus 159 ~Sa~~~~gv~~lf~~l~~ 176 (184)
T 3ihw_A 159 TCATYGLNVERVFQDVAQ 176 (184)
T ss_dssp EBTTTTBTHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHH
Confidence 999999999988766543
No 337
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.24 E-value=0.00019 Score=75.64 Aligned_cols=58 Identities=21% Similarity=0.304 Sum_probs=39.3
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccc-----------cccC------CCCceeEEEEEEe---C-------CeEEEEeC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----------PAAP------RPGVTRVLKWVRF---G-------KDLEFLDS 269 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-----------~v~~------~pg~T~~~~~~~~---~-------~~i~l~DT 269 (376)
..+|+|+|.+|+|||||+|+|+..... .+.+ ..|.|.+.....+ + ..+.|+||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 457999999999999999999743111 1111 3466665433222 2 56899999
Q ss_pred CCCcC
Q 017132 270 PGIIP 274 (376)
Q Consensus 270 pG~i~ 274 (376)
||...
T Consensus 90 PG~~d 94 (704)
T 2rdo_7 90 PGHVD 94 (704)
T ss_pred CCccc
Confidence 99864
No 338
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.24 E-value=0.00013 Score=73.07 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=61.2
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCC-------CcHHHHHHh--cCCC-eEEEEEc
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLST-------THPLMDQWL--GNRK-RILVLNR 156 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~-------~~~~l~~~l--~~kp-~ilVlNK 156 (376)
+..+.+|| .||| ..+.+.+...+..+|+++.|+|+..+... ...+...+. .+.| .++|+||
T Consensus 84 ~~~~~iiD--------tPGh-~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK 154 (458)
T 1f60_A 84 KYQVTVID--------APGH-RDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNK 154 (458)
T ss_dssp SEEEEEEE--------CCCC-TTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred CceEEEEE--------CCCc-HHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEc
Confidence 34566676 3665 35566666778999999999999864211 111111111 2444 8899999
Q ss_pred cCCCC--HHhH----HHHHHHHHHhC-----ceEEEeeCcCCcchhhh
Q 017132 157 EDMIS--MADR----NAWATYFAKQG-----TKVIFSNGQLGMGTMKL 193 (376)
Q Consensus 157 ~DL~~--~~~~----~~w~~~~~~~g-----~~vi~iSa~~g~gi~~L 193 (376)
+|+.+ .+.. .+..+++...+ ..++++|++.|.|+.++
T Consensus 155 ~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 155 MDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 99983 3321 22333444444 46899999999988643
No 339
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.22 E-value=4.7e-05 Score=70.95 Aligned_cols=81 Identities=21% Similarity=0.092 Sum_probs=55.0
Q ss_pred hhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHhHHH-HHHHHHHhCceEEEeeCcCCcchhhhh
Q 017132 118 LKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKLS 194 (376)
Q Consensus 118 idr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~-w~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (376)
...+|+++.|+|+.... ....+...+ .+.|.++|+||+|+.+...... ........|.+++++|+++|.|+.+|.
T Consensus 83 ~~~~d~ii~VvD~~~~~--~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~ 160 (274)
T 3i8s_A 83 SGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALK 160 (274)
T ss_dssp HTCCSEEEEEEEGGGHH--HHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHH
T ss_pred hcCCCEEEEEecCCChH--HHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 48999999999998632 222222222 2789999999999875432111 112223457889999999999999887
Q ss_pred HHHHHh
Q 017132 195 RLAKAL 200 (376)
Q Consensus 195 ~~l~~l 200 (376)
+.+.+.
T Consensus 161 ~~i~~~ 166 (274)
T 3i8s_A 161 LAIDRY 166 (274)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 766543
No 340
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.22 E-value=0.0006 Score=67.39 Aligned_cols=88 Identities=25% Similarity=0.308 Sum_probs=62.3
Q ss_pred HHHhhhcCeEEEEEecC-CCCCCCc---HHHHHH---hcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCC
Q 017132 115 KDQLKLMDVVIEVRDAR-IPLSTTH---PLMDQW---LGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLG 187 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR-~p~~~~~---~~l~~~---l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g 187 (376)
.+.+++++.+|+++|+. .+..... .++..+ +..+|.++|+||+|+........+.+.+...+..++++|++++
T Consensus 230 l~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g 309 (416)
T 1udx_A 230 LRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTG 309 (416)
T ss_dssp HHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred HHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCc
Confidence 34578999999999985 3221111 122222 2368999999999999875555566666666778999999999
Q ss_pred cchhhhhHHHHHhhh
Q 017132 188 MGTMKLSRLAKALAS 202 (376)
Q Consensus 188 ~gi~~L~~~l~~l~~ 202 (376)
.|+.+|.+.+.++..
T Consensus 310 ~gi~eL~~~i~~~l~ 324 (416)
T 1udx_A 310 AGLPALKEALHALVR 324 (416)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999998877765543
No 341
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.21 E-value=0.00051 Score=60.96 Aligned_cols=85 Identities=12% Similarity=0.030 Sum_probs=55.6
Q ss_pred HHhhhcCeEEEEEecCCCCCCCc--HH----HHHHhcCCCeEEEEEccCCCCHH--------------hHHHHHHHHHHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTH--PL----MDQWLGNRKRILVLNREDMISMA--------------DRNAWATYFAKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~--~~----l~~~l~~kp~ilVlNK~DL~~~~--------------~~~~w~~~~~~~ 175 (376)
..+..+|+++.|+|+.++.+..+ .. +.....+.|+++|.||+|+.+.. ....-..+....
T Consensus 94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 173 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQL 173 (214)
T ss_dssp GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHH
T ss_pred HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHc
Confidence 45788999999999987643322 11 11112367999999999996420 011112223445
Q ss_pred Cc-eEEEeeCcCCcc-hhhhhHHHHHh
Q 017132 176 GT-KVIFSNGQLGMG-TMKLSRLAKAL 200 (376)
Q Consensus 176 g~-~vi~iSa~~g~g-i~~L~~~l~~l 200 (376)
+. .++.+|+++|.| +.++.+.+.+.
T Consensus 174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~ 200 (214)
T 3q3j_B 174 GAEIYLEGSAFTSEKSIHSIFRTASML 200 (214)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeccCCCcccHHHHHHHHHHH
Confidence 66 788999999998 98887666544
No 342
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.21 E-value=0.00012 Score=72.64 Aligned_cols=87 Identities=11% Similarity=0.134 Sum_probs=60.0
Q ss_pred HHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHhHHHHHHHHH-HhCceEEEeeCcCCc
Q 017132 112 KELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRNAWATYFA-KQGTKVIFSNGQLGM 188 (376)
Q Consensus 112 k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~~w~~~~~-~~g~~vi~iSa~~g~ 188 (376)
+.....+..+|+++.|+|+ ........+..++ .+.|.++|+||+|+.+.... ...+.+. ..+..++++|++.|.
T Consensus 105 ~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~~v~~vSAktg~ 181 (423)
T 3qq5_A 105 EKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE-ELKGLYESRYEAKVLLVSALQKK 181 (423)
T ss_dssp HHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT-HHHHHSSCCTTCCCCCCSSCCTT
T ss_pred HHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH-HHHHHHHHHcCCCEEEEECCCCC
Confidence 3355678899999999998 2222223333333 27899999999999876543 2222222 345678899999999
Q ss_pred chhhhhHHHHHhh
Q 017132 189 GTMKLSRLAKALA 201 (376)
Q Consensus 189 gi~~L~~~l~~l~ 201 (376)
|+.++.+.+.+..
T Consensus 182 gI~eL~~~L~~~l 194 (423)
T 3qq5_A 182 GFDDIGKTISEIL 194 (423)
T ss_dssp STTTHHHHHHHHS
T ss_pred CHHHHHHHHHHhh
Confidence 9999988776554
No 343
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.17 E-value=0.00078 Score=65.41 Aligned_cols=92 Identities=15% Similarity=0.017 Sum_probs=59.5
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCcHHH---HHH---h--cCCCeEEEEEccCCCCHHhHH--HHHH-HHHHh-C--
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTHPLM---DQW---L--GNRKRILVLNREDMISMADRN--AWAT-YFAKQ-G-- 176 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~~~l---~~~---l--~~kp~ilVlNK~DL~~~~~~~--~w~~-~~~~~-g-- 176 (376)
.+.+.+.+..+|+++.|+|+..+......++ ... + ..+|.++|.||+|+.+..... .... ..... .
T Consensus 248 f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 248 FFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp HHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4445566899999999999876541111111 111 2 368999999999998743211 1111 11222 2
Q ss_pred ceEEEeeCcCCcchhhhhHHHHHhhh
Q 017132 177 TKVIFSNGQLGMGTMKLSRLAKALAS 202 (376)
Q Consensus 177 ~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (376)
..++++|+++|.|+.+|.+.+.++..
T Consensus 328 ~~~~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 328 FDVIPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHhc
Confidence 36788999999999999888876544
No 344
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.13 E-value=0.0014 Score=57.00 Aligned_cols=82 Identities=9% Similarity=-0.045 Sum_probs=52.9
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcHHHHHHh-------cCCCeEEEEEccCCCCHHhH----HH----HHHHHHH-----
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTHPLMDQWL-------GNRKRILVLNREDMISMADR----NA----WATYFAK----- 174 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~~~----~~----w~~~~~~----- 174 (376)
...+..+|+++.|+|+.++.......+..++ .+.|+++|.||+|+.+.+.. +. ....+.+
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 169 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK 169 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence 3567789999999999876212212222222 26799999999999874321 11 1122222
Q ss_pred hCceEEEeeCcCCcchhhhhHHH
Q 017132 175 QGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 175 ~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
.+..++.+|+++ .|+.++.+.+
T Consensus 170 ~~~~~~e~Sa~~-~~v~~~f~~l 191 (196)
T 3llu_A 170 LHLSFYLTSIYD-HSIFEAFSKV 191 (196)
T ss_dssp SCEEEEEECTTS-THHHHHHHHH
T ss_pred CCcceEEEEech-hhHHHHHHHH
Confidence 345778899999 9998876554
No 345
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.13 E-value=0.00046 Score=61.93 Aligned_cols=85 Identities=14% Similarity=0.079 Sum_probs=56.4
Q ss_pred HHHHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCc
Q 017132 114 LKDQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQ 185 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR~p~~~~~~--~l~~~l----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~ 185 (376)
....+..+|.++.|+|..++.+..+. .+..+. .+.|+++|.||+||...+. ..+..++..+.+...+.+||+
T Consensus 79 ~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAk 158 (216)
T 4dkx_A 79 IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 158 (216)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTT
T ss_pred HHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCC
Confidence 34568999999999998775443321 111111 2568999999999975432 122223334557778889999
Q ss_pred CCcchhhhhHHHH
Q 017132 186 LGMGTMKLSRLAK 198 (376)
Q Consensus 186 ~g~gi~~L~~~l~ 198 (376)
.|.|+.++.+.+.
T Consensus 159 tg~nV~e~F~~i~ 171 (216)
T 4dkx_A 159 AGYNVKQLFRRVA 171 (216)
T ss_dssp TTBSHHHHHHHHH
T ss_pred CCcCHHHHHHHHH
Confidence 9999998866553
No 346
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.11 E-value=5.8e-05 Score=69.03 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=26.1
Q ss_pred ceEEeEeecCCCCcchhhhhhh-----hcccccccCCCC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLL-----KRRMCPAAPRPG 250 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~-----~~~~~~v~~~pg 250 (376)
...+.++|.+||||||++|.|. +.+.+.+..-|+
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG 52 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3568999999999999999998 655555554443
No 347
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.00025 Score=63.26 Aligned_cols=85 Identities=11% Similarity=-0.057 Sum_probs=53.9
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHHHHh----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcCC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG 187 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~~~l----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~g 187 (376)
..+..+|+++.|+|+..+.+..+. .+..+. .+.|+++|+||+|+.+... ......+....+..++.+|++.|
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS 160 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 557899999999998875432211 111111 2578999999999975321 12222334455678889999999
Q ss_pred cchhhhhHHHHHh
Q 017132 188 MGTMKLSRLAKAL 200 (376)
Q Consensus 188 ~gi~~L~~~l~~l 200 (376)
.|+.++.+.+.+.
T Consensus 161 ~gi~~l~~~l~~~ 173 (223)
T 3cpj_B 161 ENVDKAFEELINT 173 (223)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999887666543
No 348
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.09 E-value=0.00038 Score=64.83 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=53.0
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH----hHHHHHHHHHHhCceEEEeeCcCCcchhh
Q 017132 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA----DRNAWATYFAKQGTKVIFSNGQLGMGTMK 192 (376)
Q Consensus 119 dr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~----~~~~w~~~~~~~g~~vi~iSa~~g~gi~~ 192 (376)
..+|+++.|+|+.... ....+...+ .+.|.++|+||+|+.... ....+. ...|.+++.+|+++|.|+.+
T Consensus 79 ~~~d~vi~V~D~t~~e--~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~---~~lg~~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 79 QRADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLS---YHLGVPVVATSALKQTGVDQ 153 (272)
T ss_dssp TCCSEEEEEEEGGGHH--HHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHH---HHHTSCEEECBTTTTBSHHH
T ss_pred CCCCEEEEEecCCchH--hHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHH---HHcCCCEEEEEccCCCCHHH
Confidence 4799999999987632 122222222 378999999999986442 122332 33477899999999999999
Q ss_pred hhHHHHHh
Q 017132 193 LSRLAKAL 200 (376)
Q Consensus 193 L~~~l~~l 200 (376)
+.+.+.+.
T Consensus 154 l~~~i~~~ 161 (272)
T 3b1v_A 154 VVKKAAHT 161 (272)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHH
Confidence 87776543
No 349
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.08 E-value=2.2e-05 Score=80.18 Aligned_cols=119 Identities=18% Similarity=0.144 Sum_probs=73.6
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHh--HHHHHHHH----HHhC--ceEEEeeCc
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMAD--RNAWATYF----AKQG--TKVIFSNGQ 185 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~--~~~w~~~~----~~~g--~~vi~iSa~ 185 (376)
..+..+|+++.|+|+.++......+....+ .+.|.++|+||+|+.+... .......+ ...+ ..++++|++
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAk 150 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSAL 150 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSS
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECC
Confidence 456789999999999986554433333333 3689999999999975321 11111111 1111 367789999
Q ss_pred CCcchhhhhHHHHHhhhhhhhhhhcc------------CCCCCceEEeEeecCCCCcchhh
Q 017132 186 LGMGTMKLSRLAKALASDVNVKRRSK------------GLLPRAVRAGIVGYPNVGKSSLI 234 (376)
Q Consensus 186 ~g~gi~~L~~~l~~l~~~~~~~~~~~------------~~~~~~~~v~lvG~pNvGKSTLi 234 (376)
+|.|+.+|.+.+..+........... ......+..++|+..+++|++.+
T Consensus 151 tG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 151 TGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL 211 (537)
T ss_dssp SSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred CCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence 99999999887766543221111000 00112456788999999998876
No 350
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.07 E-value=0.00055 Score=59.20 Aligned_cols=85 Identities=11% Similarity=-0.018 Sum_probs=56.0
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcH--H---HHHHh----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEee
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTHP--L---MDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSN 183 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~~--~---l~~~l----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iS 183 (376)
...+..+|.++.|+|..++.+..+. . +.... .+.|+++|.||+|+..... .....++..+.+..++.+|
T Consensus 86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 165 (187)
T 3c5c_A 86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVS 165 (187)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECC
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEe
Confidence 3567889999999998865432211 1 11111 3689999999999964321 1222233445577889999
Q ss_pred C-cCCcchhhhhHHHHH
Q 017132 184 G-QLGMGTMKLSRLAKA 199 (376)
Q Consensus 184 a-~~g~gi~~L~~~l~~ 199 (376)
+ ++|.|+.++.+.+.+
T Consensus 166 a~~~g~gv~~lf~~l~~ 182 (187)
T 3c5c_A 166 ACLDFEHVQHVFHEAVR 182 (187)
T ss_dssp SSSCSHHHHHHHHHHHH
T ss_pred ecCccccHHHHHHHHHH
Confidence 9 899999888766543
No 351
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.03 E-value=0.00061 Score=64.08 Aligned_cols=85 Identities=18% Similarity=0.030 Sum_probs=56.3
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCCCCHHh--------------HHHHHHHHHH
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMAD--------------RNAWATYFAK 174 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~~------~l~~~l~~kp~ilVlNK~DL~~~~~--------------~~~w~~~~~~ 174 (376)
...+..+|+++.|+|+.++.+..+. .+.....+.|.++|.||+|+.+... .....++...
T Consensus 221 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 300 (332)
T 2wkq_A 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 300 (332)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHH
Confidence 3567899999999998775432221 1222223789999999999965321 1112223334
Q ss_pred hCc-eEEEeeCcCCcchhhhhHHHHH
Q 017132 175 QGT-KVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 175 ~g~-~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
.+. .++.+|+++|.|+.++.+.+.+
T Consensus 301 ~~~~~~~~~Sa~~~~gi~~l~~~l~~ 326 (332)
T 2wkq_A 301 IGAVKYLECSALTQRGLKTVFDEAIR 326 (332)
T ss_dssp TTCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCcCHHHHHHHHHH
Confidence 454 7889999999999988776654
No 352
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.01 E-value=0.00019 Score=60.77 Aligned_cols=77 Identities=21% Similarity=0.192 Sum_probs=51.0
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHHh----HHHHHHHHHHhCceEEEeeCcCCcchhhh
Q 017132 119 KLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMAD----RNAWATYFAKQGTKVIFSNGQLGMGTMKL 193 (376)
Q Consensus 119 dr~dlILeV~DaR~p~~~~~~~l~~~l-~~kp~ilVlNK~DL~~~~~----~~~w~~~~~~~g~~vi~iSa~~g~gi~~L 193 (376)
..+|+++.|+|+..... ....+..+. .+.|.++|.||+|+..... ...|. ...+..++.+||++|.|+.++
T Consensus 80 ~~~~~~i~v~D~~~~~~-~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~SA~~~~~v~~l 155 (165)
T 2wji_A 80 EKPDLVVNIVDATALER-NLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE---KILGVKVVPLSAAKKMGIEEL 155 (165)
T ss_dssp HCCSEEEEEEETTCHHH-HHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHH---HHHTSCEEECBGGGTBSHHHH
T ss_pred CCCCEEEEEecCCchhH-hHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHH---HHhCCCEEEEEcCCCCCHHHH
Confidence 47999999999875311 011111222 3689999999999864321 22332 334678899999999999988
Q ss_pred hHHHHH
Q 017132 194 SRLAKA 199 (376)
Q Consensus 194 ~~~l~~ 199 (376)
.+.+.+
T Consensus 156 ~~~l~~ 161 (165)
T 2wji_A 156 KKAISI 161 (165)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 353
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.99 E-value=0.00015 Score=67.09 Aligned_cols=82 Identities=22% Similarity=0.321 Sum_probs=55.5
Q ss_pred hhhcCeEEEEEecCCCCCCCcHHHH-HHh-cC-CCeEEEEEccCCCCHHhHHH-HHHHHHHhCceEEEeeCcCCcchhhh
Q 017132 118 LKLMDVVIEVRDARIPLSTTHPLMD-QWL-GN-RKRILVLNREDMISMADRNA-WATYFAKQGTKVIFSNGQLGMGTMKL 193 (376)
Q Consensus 118 idr~dlILeV~DaR~p~~~~~~~l~-~~l-~~-kp~ilVlNK~DL~~~~~~~~-w~~~~~~~g~~vi~iSa~~g~gi~~L 193 (376)
...+|+++.|+|+..+. .+..+. ++. .. .|+++|+||+|+.+...... ........|.+++++|++.|.|+.++
T Consensus 79 ~~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l 156 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEEL 156 (271)
T ss_dssp TTCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHH
T ss_pred ccCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHH
Confidence 37899999999998742 222221 122 24 89999999999875432111 11122345788999999999999998
Q ss_pred hHHHHHhh
Q 017132 194 SRLAKALA 201 (376)
Q Consensus 194 ~~~l~~l~ 201 (376)
.+.+.+..
T Consensus 157 ~~~i~~~~ 164 (271)
T 3k53_A 157 KRMIALMA 164 (271)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776553
No 354
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.97 E-value=0.0011 Score=61.26 Aligned_cols=79 Identities=10% Similarity=0.029 Sum_probs=45.7
Q ss_pred cCeEEEEEec-CCCCCCCcHHHHHHhc-CCCeEEEEEccCCCCHHhHHHH----HHHHHHhCceEEEeeCcCCcchhhhh
Q 017132 121 MDVVIEVRDA-RIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAW----ATYFAKQGTKVIFSNGQLGMGTMKLS 194 (376)
Q Consensus 121 ~dlILeV~Da-R~p~~~~~~~l~~~l~-~kp~ilVlNK~DL~~~~~~~~w----~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (376)
+|+++.+++. +.+....+.++.+.+. ..|+++|+||+|+.+..+.... .+.+...+..++.+|+..+.|+.++.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~ 195 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLV 195 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------C
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHH
Confidence 6788888854 4355555555555554 7899999999999987765433 33444567778888999999988877
Q ss_pred HHHHH
Q 017132 195 RLAKA 199 (376)
Q Consensus 195 ~~l~~ 199 (376)
+.+.+
T Consensus 196 ~~l~~ 200 (274)
T 3t5d_A 196 KKIKD 200 (274)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66543
No 355
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.89 E-value=0.0024 Score=60.20 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=49.5
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCcHH-----HHHHh---cCCCeEEEEEccCCCCHHhHH--------HHHHHHHHhC--
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTHPL-----MDQWL---GNRKRILVLNREDMISMADRN--------AWATYFAKQG-- 176 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~~~-----l~~~l---~~kp~ilVlNK~DL~~~~~~~--------~w~~~~~~~g-- 176 (376)
...+..+|+++.|+|+.++.+..+.. +..+. .+.|+++|+||+|+.+..... ...++....|
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~ 154 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFP 154 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCC
Confidence 35678999999999998765433321 11221 268999999999999843322 1222333444
Q ss_pred -ceEEEeeCcCCcchhh
Q 017132 177 -TKVIFSNGQLGMGTMK 192 (376)
Q Consensus 177 -~~vi~iSa~~g~gi~~ 192 (376)
..++.+|++. .++.+
T Consensus 155 ~~~~~~tSa~~-~~i~e 170 (307)
T 3r7w_A 155 NLIGFPTSIWD-ESLYK 170 (307)
T ss_dssp SCEEEECCTTS-SHHHH
T ss_pred CeEEEEeeecC-ChHHH
Confidence 5788899988 44443
No 356
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.82 E-value=0.001 Score=67.70 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=53.8
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcCCcc
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGMG 189 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~g~g 189 (376)
..+..+|+++.|+|+... .....+...+ .+.|+++|.||+|+.+... .....+.+...+..++.+||++|.|
T Consensus 117 ~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~g 194 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDG 194 (535)
T ss_dssp HHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----
T ss_pred HHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccC
Confidence 457789999999999754 1112222222 3589999999999986432 3334445555667799999999999
Q ss_pred hhhhhHHHHHhh
Q 017132 190 TMKLSRLAKALA 201 (376)
Q Consensus 190 i~~L~~~l~~l~ 201 (376)
+.+|.+.+.+..
T Consensus 195 i~eL~~~l~~~~ 206 (535)
T 3dpu_A 195 VESIAKSLKSAV 206 (535)
T ss_dssp CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999877765543
No 357
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.82 E-value=0.0032 Score=65.03 Aligned_cols=86 Identities=17% Similarity=0.101 Sum_probs=56.8
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH-----------------h--------HHHHH
Q 017132 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA-----------------D--------RNAWA 169 (376)
Q Consensus 117 vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~-----------------~--------~~~w~ 169 (376)
.+..+|.++.|+|+.++......+...++ .+.|+++++||+|+.+.. . .....
T Consensus 90 ~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~ 169 (594)
T 1g7s_A 90 GGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELV 169 (594)
T ss_dssp SSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 46779999999999986543322222222 368999999999997421 0 01122
Q ss_pred HHHHHhC---------------ceEEEeeCcCCcchhhhhHHHHHhhh
Q 017132 170 TYFAKQG---------------TKVIFSNGQLGMGTMKLSRLAKALAS 202 (376)
Q Consensus 170 ~~~~~~g---------------~~vi~iSa~~g~gi~~L~~~l~~l~~ 202 (376)
..+...+ .+++++||++|.|+.+|.+.+..+.+
T Consensus 170 ~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 170 GKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 2333322 26889999999999999887765543
No 358
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.79 E-value=0.0029 Score=60.91 Aligned_cols=104 Identities=10% Similarity=0.012 Sum_probs=60.7
Q ss_pred cccCCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH
Q 017132 84 ADLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA 163 (376)
Q Consensus 84 ~~~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~ 163 (376)
...+.+++++|. +.-..+ . ..+.+.+|+++.|+|+..+... ..+...+...|.++|+||+|+.+..
T Consensus 163 ~~~~~~~iliDT---~Gi~~~------~---~~l~~~~d~vl~V~d~~~~~~~--~~i~~~il~~~~ivVlNK~Dl~~~~ 228 (349)
T 2www_A 163 EGAGYDIILIET---VGVGQS------E---FAVADMVDMFVLLLPPAGGDEL--QGIKRGIIEMADLVAVTKSDGDLIV 228 (349)
T ss_dssp HHTTCSEEEEEC---CCC--C------H---HHHHTTCSEEEEEECCC--------------CCSCSEEEECCCSGGGHH
T ss_pred ccCCCCEEEEEC---CCcchh------h---hhHHhhCCEEEEEEcCCcchhH--HHhHHHHHhcCCEEEEeeecCCCch
Confidence 345778888883 211001 0 2346789999999998764321 1122223357889999999998653
Q ss_pred hHH----HHHHHHHH-------hCceEEEeeCcCCcchhhhhHHHHHhh
Q 017132 164 DRN----AWATYFAK-------QGTKVIFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 164 ~~~----~w~~~~~~-------~g~~vi~iSa~~g~gi~~L~~~l~~l~ 201 (376)
... .+...+.. ...+++++|+++|.|+.+|.+.+.++.
T Consensus 229 ~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 229 PARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 321 22222211 134678899999999999988776543
No 359
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.78 E-value=0.0011 Score=56.84 Aligned_cols=84 Identities=15% Similarity=0.075 Sum_probs=53.5
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCCCCHHh--------------HHHHHHHHHHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMAD--------------RNAWATYFAKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~------~l~~~l~~kp~ilVlNK~DL~~~~~--------------~~~w~~~~~~~ 175 (376)
..+..+|+++.|+|..++.+..+. ++.....+.|+++|.||+|+.+... .....++..+.
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 153 (184)
T 1m7b_A 74 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 153 (184)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHc
Confidence 457899999999998865432221 1222223689999999999974210 11112223334
Q ss_pred C-ceEEEeeCc-CCcchhhhhHHHHH
Q 017132 176 G-TKVIFSNGQ-LGMGTMKLSRLAKA 199 (376)
Q Consensus 176 g-~~vi~iSa~-~g~gi~~L~~~l~~ 199 (376)
+ ..++.+|++ .|.|+.++.+.+.+
T Consensus 154 ~~~~~~e~Sa~~~~~gi~~l~~~i~~ 179 (184)
T 1m7b_A 154 GAATYIECSALQSENSVRDIFHVATL 179 (184)
T ss_dssp TCSEEEECBTTTBHHHHHHHHHHHHH
T ss_pred CCcEEEEeeecCCCcCHHHHHHHHHH
Confidence 5 578889998 68899888766543
No 360
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.77 E-value=0.00012 Score=65.15 Aligned_cols=54 Identities=26% Similarity=0.351 Sum_probs=37.8
Q ss_pred EEeEeecCCCCcchhhhhhhhccc-ccccCCCCceeEEEEEEe-CCeEEEEeCCCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVLKWVRF-GKDLEFLDSPGI 272 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pg~T~~~~~~~~-~~~i~l~DTpG~ 272 (376)
.++|+|.+|||||||+|.|.+... ......+.|||....-.. +..+.++|+..|
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f 76 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEM 76 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHh
Confidence 489999999999999999997543 345667788887643222 344555555554
No 361
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.77 E-value=0.0011 Score=58.43 Aligned_cols=84 Identities=15% Similarity=0.075 Sum_probs=53.6
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH------HHHHHhcCCCeEEEEEccCCCCHHh--------------HHHHHHHHHHh
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP------LMDQWLGNRKRILVLNREDMISMAD--------------RNAWATYFAKQ 175 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~------~l~~~l~~kp~ilVlNK~DL~~~~~--------------~~~w~~~~~~~ 175 (376)
..+..+|+++.|+|...+.+..+. ++.....+.|+++|.||+|+.+... .....++..+.
T Consensus 95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 174 (205)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence 457899999999998865432221 1222223689999999999974210 11112223334
Q ss_pred C-ceEEEeeCc-CCcchhhhhHHHHH
Q 017132 176 G-TKVIFSNGQ-LGMGTMKLSRLAKA 199 (376)
Q Consensus 176 g-~~vi~iSa~-~g~gi~~L~~~l~~ 199 (376)
+ ..++.+|++ .|.|+.++.+.+.+
T Consensus 175 ~~~~~~e~SAk~~~~gv~~lf~~l~~ 200 (205)
T 1gwn_A 175 GAATYIECSALQSENSVRDIFHVATL 200 (205)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeeeccCCcCHHHHHHHHHH
Confidence 5 578899998 68899888766543
No 362
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.76 E-value=0.00046 Score=64.20 Aligned_cols=90 Identities=12% Similarity=0.135 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhcCeE-EEEEecCCCCCCCcH-HHHHHhc--CCCeEEEEEccCCCCHHh-HHHHHHH-HHH--hC-ceEE
Q 017132 110 TEKELKDQLKLMDVV-IEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMAD-RNAWATY-FAK--QG-TKVI 180 (376)
Q Consensus 110 ~~k~l~~vidr~dlI-LeV~DaR~p~~~~~~-~l~~~l~--~kp~ilVlNK~DL~~~~~-~~~w~~~-~~~--~g-~~vi 180 (376)
....+...+..++.+ |.|+|+..+....+. .+.+.+. +.|.++|+||+|+.+... ...+.+. +.. .+ ..++
T Consensus 151 ~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~ 230 (299)
T 2aka_B 151 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV 230 (299)
T ss_dssp HHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECC
T ss_pred HHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEE
Confidence 344455777777755 579999876555442 3444443 679999999999987543 1222111 001 12 2466
Q ss_pred EeeCcCCcchhhhhHHHHH
Q 017132 181 FSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 181 ~iSa~~g~gi~~L~~~l~~ 199 (376)
.+|+++|.|+.++.+.+.+
T Consensus 231 ~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 231 NRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp CCCCBCTTSCBCHHHHHHH
T ss_pred CCChhhccccccHHHHHHH
Confidence 7999999999888776654
No 363
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.74 E-value=0.00082 Score=70.43 Aligned_cols=58 Identities=22% Similarity=0.259 Sum_probs=38.4
Q ss_pred ceEEeEeecCCCCcchhhhhhhhcccc-----c------ccC------CCCceeEEEEEEe---CCeEEEEeCCCCcC
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKRRMC-----P------AAP------RPGVTRVLKWVRF---GKDLEFLDSPGIIP 274 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~~~~-----~------v~~------~pg~T~~~~~~~~---~~~i~l~DTpG~i~ 274 (376)
..+|+|+|.+|+|||||+|+|++.... . +.+ ..|+|...+...+ +..+.|+||||...
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 457999999999999999999853211 0 111 1245544443332 44688999999853
No 364
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.73 E-value=0.0015 Score=69.21 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=61.0
Q ss_pred HHHHHHHHh-hhcCeEEEEEecCCCCCCCcH-HHHHHhc--CCCeEEEEEccCCCCHHhH-HHHHHH-HH--HhC-ceEE
Q 017132 110 TEKELKDQL-KLMDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMADR-NAWATY-FA--KQG-TKVI 180 (376)
Q Consensus 110 ~~k~l~~vi-dr~dlILeV~DaR~p~~~~~~-~l~~~l~--~kp~ilVlNK~DL~~~~~~-~~w~~~-~~--~~g-~~vi 180 (376)
+.+.+.+.+ ..+|+||.|+|++.+....+. .+...+. ++|.++|+||+|++++... ...... +. +.+ ..++
T Consensus 176 i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV 255 (772)
T 3zvr_A 176 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV 255 (772)
T ss_dssp HHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECC
T ss_pred HHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceE
Confidence 334444555 688999999999988776665 5666654 5899999999999976432 111110 00 112 3577
Q ss_pred EeeCcCCcchhhhhHHHHH
Q 017132 181 FSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 181 ~iSa~~g~gi~~L~~~l~~ 199 (376)
++|+++|.|+..|.+.+.+
T Consensus 256 ~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 256 NRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CCCCEESSSSEEHHHHHHH
T ss_pred EecccccccchhHHHHHHH
Confidence 8999999999887766654
No 365
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.72 E-value=0.00052 Score=68.20 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=20.6
Q ss_pred ceEEeEeecCCCCcchhhhhhhh
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~ 239 (376)
+..|+++|.|||||||+.+.|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999985
No 366
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.72 E-value=0.0025 Score=59.71 Aligned_cols=90 Identities=8% Similarity=0.028 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhcCeEEEEEec-CCCCCCCc-HHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHHH----hCceEEE
Q 017132 110 TEKELKDQLKLMDVVIEVRDA-RIPLSTTH-PLMDQWLG--NRKRILVLNREDMISMADRNAWATYFAK----QGTKVIF 181 (376)
Q Consensus 110 ~~k~l~~vidr~dlILeV~Da-R~p~~~~~-~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~~----~g~~vi~ 181 (376)
........+..+|+++.|+|+ .......+ ..+...+. ++|.++|+||+|+.+... .+.+.+.. .+...+.
T Consensus 157 ~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~ 234 (315)
T 1jwy_B 157 IRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGT--DAMEVLTGRVIPLTLGFIG 234 (315)
T ss_dssp HHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSC--CCHHHHTTSSSCCTTCEEE
T ss_pred HHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcch--HHHHHHhCCCccCCCCeEE
Confidence 444556788999999999997 44444334 35666653 689999999999986543 11222222 1123344
Q ss_pred e---eCcC---CcchhhhhHHHHHhh
Q 017132 182 S---NGQL---GMGTMKLSRLAKALA 201 (376)
Q Consensus 182 i---Sa~~---g~gi~~L~~~l~~l~ 201 (376)
+ |+.. +.|+.++.+.+.++.
T Consensus 235 v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 235 VINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp CCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred EecCChhhhccCCCHHHHHHHHHHHH
Confidence 4 4444 566777666655544
No 367
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.72 E-value=0.0066 Score=54.62 Aligned_cols=83 Identities=12% Similarity=0.039 Sum_probs=44.7
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHH-HHHHh------cCCCeEEEEEccCCCCHHhHHH--------HHHHHHHhCceEE
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPL-MDQWL------GNRKRILVLNREDMISMADRNA--------WATYFAKQGTKVI 180 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~-l~~~l------~~kp~ilVlNK~DL~~~~~~~~--------w~~~~~~~g~~vi 180 (376)
.....+|++|.|+|+... ...... +..+. ..+|.++|+||+|+........ ..+...+.+..++
T Consensus 108 ~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~ 186 (239)
T 3lxx_A 108 LTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYC 186 (239)
T ss_dssp HTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEE
T ss_pred hcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEE
Confidence 344567999999998643 222222 22222 1358999999999987654332 2233345566677
Q ss_pred EeeCcCC-----cchhhhhHHHHH
Q 017132 181 FSNGQLG-----MGTMKLSRLAKA 199 (376)
Q Consensus 181 ~iSa~~g-----~gi~~L~~~l~~ 199 (376)
+++...+ .++.+|.+.+.+
T Consensus 187 ~~~~~~~~~~~~~~v~~ll~~i~~ 210 (239)
T 3lxx_A 187 ALNNKATGAEQEAQRAQLLGLIQR 210 (239)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccccHHHHHHHHHHHHH
Confidence 7766533 344444444433
No 368
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.71 E-value=0.008 Score=52.36 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=58.7
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHHhHH----HHHHHHHHhC--ceEEEeeCcCCcch
Q 017132 119 KLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMADRN----AWATYFAKQG--TKVIFSNGQLGMGT 190 (376)
Q Consensus 119 dr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~~~~----~w~~~~~~~g--~~vi~iSa~~g~gi 190 (376)
..++.++.++|+..+....+.++..++ ...|.++|.||+|+.+..+.+ .....+.+.+ ...+++|+..+.|+
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV 186 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence 578899999999877654444454444 367889999999999865432 2222333332 45678999999999
Q ss_pred hhhhHHHHHhhh
Q 017132 191 MKLSRLAKALAS 202 (376)
Q Consensus 191 ~~L~~~l~~l~~ 202 (376)
.++.+.+.++..
T Consensus 187 ~~l~~~l~~~~~ 198 (210)
T 1pui_A 187 DKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999888776543
No 369
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.69 E-value=0.0029 Score=66.56 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=65.8
Q ss_pred CcEEEEcCCCCCcccChhHHHH--HHHHHHHHhhhcCeEEEEEecCCCCCCCcHHH-HHHhc--CCCeEEEEEccCCCCH
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAK--TEKELKDQLKLMDVVIEVRDARIPLSTTHPLM-DQWLG--NRKRILVLNREDMISM 162 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~--~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l-~~~l~--~kp~ilVlNK~DL~~~ 162 (376)
.++.++| + ||+... ....+.+.+..+|+||+|+|+..+.+..+.++ ...+. .+|.++|+||+|+...
T Consensus 174 ~~l~LiD---T-----PGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVD---S-----PGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEE---C-----CCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred CCeEEEE---C-----CCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 3566666 2 554321 23444577899999999999987765544432 23333 5789999999999754
Q ss_pred H--------hHHH----H----HHHHHHh---------CceEEEeeCc--------------CCcchhhhhHHHHHh
Q 017132 163 A--------DRNA----W----ATYFAKQ---------GTKVIFSNGQ--------------LGMGTMKLSRLAKAL 200 (376)
Q Consensus 163 ~--------~~~~----w----~~~~~~~---------g~~vi~iSa~--------------~g~gi~~L~~~l~~l 200 (376)
. .... . ...+... ...++++|++ .+.|+..|.+.+.+.
T Consensus 246 ~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~ 322 (695)
T 2j69_A 246 SLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTF 322 (695)
T ss_dssp GCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHH
T ss_pred cccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHH
Confidence 3 1111 1 1112111 1368999999 899998887665543
No 370
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.67 E-value=0.00096 Score=57.42 Aligned_cols=86 Identities=16% Similarity=0.095 Sum_probs=54.3
Q ss_pred HHHhhhcCeEEEEEecCCCCCCCc---HHHHHHh---cCCCeEEEEEccCCCCHHhHH----HHHHHHH-HhCce----E
Q 017132 115 KDQLKLMDVVIEVRDARIPLSTTH---PLMDQWL---GNRKRILVLNREDMISMADRN----AWATYFA-KQGTK----V 179 (376)
Q Consensus 115 ~~vidr~dlILeV~DaR~p~~~~~---~~l~~~l---~~kp~ilVlNK~DL~~~~~~~----~w~~~~~-~~g~~----v 179 (376)
...+..+|+++.|+|...+..+.+ ..+..+. .+.|+++|.||+|+.+..... ...+.+. ..+.. +
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (184)
T 2zej_A 74 PHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDY 153 (184)
T ss_dssp HHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEE
T ss_pred HHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhhe
Confidence 355778999999999877532211 1122221 367899999999998765432 2222222 23443 7
Q ss_pred EEeeCcCCc-chhhhhHHHHHh
Q 017132 180 IFSNGQLGM-GTMKLSRLAKAL 200 (376)
Q Consensus 180 i~iSa~~g~-gi~~L~~~l~~l 200 (376)
+.+||++|. |+.+|.+.+.+.
T Consensus 154 ~~~Sa~~~~~~~~~l~~~i~~~ 175 (184)
T 2zej_A 154 HFVNATEESDALAKLRKTIINE 175 (184)
T ss_dssp EECCTTSCCHHHHHHHHHHHHH
T ss_pred EEEecccCchhHHHHHHHHHHH
Confidence 889999996 888877665443
No 371
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.67 E-value=0.00034 Score=60.06 Aligned_cols=79 Identities=22% Similarity=0.201 Sum_probs=51.9
Q ss_pred hhcCeEEEEEecCCCCCCCcHHHHHHh-cCCCeEEEEEccCCCCHH----hHHHHHHHHHHhCceEEEeeCcCCcchhhh
Q 017132 119 KLMDVVIEVRDARIPLSTTHPLMDQWL-GNRKRILVLNREDMISMA----DRNAWATYFAKQGTKVIFSNGQLGMGTMKL 193 (376)
Q Consensus 119 dr~dlILeV~DaR~p~~~~~~~l~~~l-~~kp~ilVlNK~DL~~~~----~~~~w~~~~~~~g~~vi~iSa~~g~gi~~L 193 (376)
..+|+++.|+|+.... .....+..+. .+.|.++|.||+|+.... ....+. ...+..++.+|++.|.|+.++
T Consensus 84 ~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v~~l 159 (188)
T 2wjg_A 84 EKPDLVVNIVDATALE-RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLE---KILGVKVVPLSAAKKMGIEEL 159 (188)
T ss_dssp HCCSEEEEEEEGGGHH-HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHH---HHHTSCEEECBGGGTBSHHHH
T ss_pred cCCCEEEEEecchhHH-HHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHH---HHhCCCeEEEEecCCCCHHHH
Confidence 4589999999987421 0011112222 267999999999986442 222232 334678899999999999988
Q ss_pred hHHHHHhh
Q 017132 194 SRLAKALA 201 (376)
Q Consensus 194 ~~~l~~l~ 201 (376)
.+.+.+..
T Consensus 160 ~~~i~~~~ 167 (188)
T 2wjg_A 160 KKAISIAV 167 (188)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77765543
No 372
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.66 E-value=0.00011 Score=64.14 Aligned_cols=83 Identities=12% Similarity=0.030 Sum_probs=46.5
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH--HHHHHhc----CCCeEEEEEccCCCCHHhH--HHHHHHHHHhCceEEEeeCcCC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP--LMDQWLG----NRKRILVLNREDMISMADR--NAWATYFAKQGTKVIFSNGQLG 187 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~--~l~~~l~----~kp~ilVlNK~DL~~~~~~--~~w~~~~~~~g~~vi~iSa~~g 187 (376)
..+..+|+++.|+|+.++.+.... .+..+.. +.|.++|.||+|+.+.... ..........+..++.+|+++|
T Consensus 101 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 180 (199)
T 3l0i_B 101 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA 180 (199)
T ss_dssp C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCC
Confidence 457889999999998875432111 1111211 5789999999999765321 1111223345677888999999
Q ss_pred cchhhhhHHHH
Q 017132 188 MGTMKLSRLAK 198 (376)
Q Consensus 188 ~gi~~L~~~l~ 198 (376)
.|+.++.+.+.
T Consensus 181 ~gv~~l~~~l~ 191 (199)
T 3l0i_B 181 TNVEQSFMTMA 191 (199)
T ss_dssp HHHHHHHHHHT
T ss_pred CCHHHHHHHHH
Confidence 99988766554
No 373
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.64 E-value=0.0012 Score=63.21 Aligned_cols=56 Identities=20% Similarity=0.177 Sum_probs=35.5
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCCCCceeEEEEEEe--CCeEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRVLKWVRF--GKDLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~pg~T~~~~~~~~--~~~i~l~DTpG~i~ 274 (376)
||.++|-.|||||||++.+.+.-........+.|.......+ .-++.+.||+|--.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQEr 58 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLN 58 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchh
Confidence 488999999999999998875321111112334433222222 24689999999754
No 374
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.64 E-value=0.0027 Score=60.87 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=61.4
Q ss_pred ccCCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHHh
Q 017132 85 DLDADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMAD 164 (376)
Q Consensus 85 ~~~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~ 164 (376)
..+.+++++|- ||+.. .. ..+...+|+++.|+|+..+..... +.....+.|.++|+||+|+.+...
T Consensus 146 ~~~~~i~liDT--------pG~~~-~~---~~~~~~aD~vl~Vvd~~~~~~~~~--l~~~~~~~p~ivv~NK~Dl~~~~~ 211 (341)
T 2p67_A 146 AAGYDVVIVET--------VGVGQ-SE---TEVARMVDCFISLQIAGGGDDLQG--IKKGLMEVADLIVINKDDGDNHTN 211 (341)
T ss_dssp HTTCSEEEEEE--------ECCTT-HH---HHHHTTCSEEEEEECC------CC--CCHHHHHHCSEEEECCCCTTCHHH
T ss_pred ccCCCEEEEeC--------CCccc-hH---HHHHHhCCEEEEEEeCCccHHHHH--HHHhhhcccCEEEEECCCCCChHH
Confidence 34678888882 33211 11 124689999999999865422110 111112468899999999987644
Q ss_pred HHHHHHHHHH----h-------CceEEEeeCcCCcchhhhhHHHHHh
Q 017132 165 RNAWATYFAK----Q-------GTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 165 ~~~w~~~~~~----~-------g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
...+.+.++. . ...++++|+++|.|+..|.+.+.+.
T Consensus 212 ~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 212 VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 3333222221 1 3467889999999999988776653
No 375
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.58 E-value=0.0031 Score=62.78 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=38.0
Q ss_pred eEEeEeecCCCCcchhhhhhhhc-----------------ccccccCC-CCceeEEE-EE-----Ee--CC--eEEEEeC
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKR-----------------RMCPAAPR-PGVTRVLK-WV-----RF--GK--DLEFLDS 269 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~-----------------~~~~v~~~-pg~T~~~~-~~-----~~--~~--~i~l~DT 269 (376)
.-|+|+|.+++|||+|+|.|++- ....+++. --+|+.+- |. .. +. .++|+||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 45899999999999999977521 11222221 12555542 21 11 22 4899999
Q ss_pred CCCcCCCCC
Q 017132 270 PGIIPMRIS 278 (376)
Q Consensus 270 pG~i~~~~~ 278 (376)
.|+.....+
T Consensus 148 EG~~d~~~~ 156 (457)
T 4ido_A 148 QGTFDSQST 156 (457)
T ss_dssp CCBTCTTCC
T ss_pred cCCCCcccC
Confidence 999866443
No 376
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.55 E-value=0.0029 Score=57.70 Aligned_cols=112 Identities=11% Similarity=0.021 Sum_probs=62.5
Q ss_pred CCcEEEEcCCCCCcccChhHH--HHHHHHHH----HHhhhcCeEEEEEecCCCCCCCcHHHHHHh-c-------CCCeEE
Q 017132 87 DADLYYWTKSLRPVQWYPGHI--AKTEKELK----DQLKLMDVVIEVRDARIPLSTTHPLMDQWL-G-------NRKRIL 152 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~--~~~~k~l~----~vidr~dlILeV~DaR~p~~~~~~~l~~~l-~-------~kp~il 152 (376)
+..+.+|| +|..+-++.. ....+.+. .....+|++|.|+|+.. ....+..+.+++ . +.|+++
T Consensus 69 ~~~i~liD---TPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iil 144 (247)
T 3lxw_A 69 KCHVEVVD---TPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIV 144 (247)
T ss_dssp TEEEEEEE---CCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred CcEEEEEE---CCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEE
Confidence 45677787 4443333221 11223333 33499999999999864 333233322222 1 578999
Q ss_pred EEEccCCCCHHhH--------HHHHHHHHHhCceEEEeeCcC-----CcchhhhhHHHHHhhh
Q 017132 153 VLNREDMISMADR--------NAWATYFAKQGTKVIFSNGQL-----GMGTMKLSRLAKALAS 202 (376)
Q Consensus 153 VlNK~DL~~~~~~--------~~w~~~~~~~g~~vi~iSa~~-----g~gi~~L~~~l~~l~~ 202 (376)
+.||+|+...... ..........|..+.+++... +.|+.+|.+.+.++..
T Consensus 145 v~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~ 207 (247)
T 3lxw_A 145 FTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVL 207 (247)
T ss_dssp EECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHH
Confidence 9999999753211 112333445566676666543 4566666666655543
No 377
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.48 E-value=0.0016 Score=67.24 Aligned_cols=87 Identities=15% Similarity=0.119 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCC-------CCCcHHHHHHh--cCCC-eEEEEEccCCCC--HHhH----HH
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPL-------STTHPLMDQWL--GNRK-RILVLNREDMIS--MADR----NA 167 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~-------~~~~~~l~~~l--~~kp-~ilVlNK~DL~~--~~~~----~~ 167 (376)
|||. .+.+.+...+..+|++|.|+|+..+. .....+...++ .+.| +++|+||+|+.+ .... ..
T Consensus 263 PGh~-~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~~~~i~~e 341 (592)
T 3mca_A 263 PGHR-DFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDRFQEIKNI 341 (592)
T ss_dssp ESSS-EEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHHHHHHHHH
T ss_pred CChH-HHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHHHHHHHHH
Confidence 6652 22222334467899999999998753 22222222222 2444 889999999986 3322 22
Q ss_pred HHHHH-HHhCc-----eEEEeeCcCCcchh
Q 017132 168 WATYF-AKQGT-----KVIFSNGQLGMGTM 191 (376)
Q Consensus 168 w~~~~-~~~g~-----~vi~iSa~~g~gi~ 191 (376)
...++ ...|. .++++||++|.|+.
T Consensus 342 l~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 342 VSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 33333 33343 58899999999987
No 378
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.0044 Score=55.16 Aligned_cols=82 Identities=15% Similarity=0.031 Sum_probs=51.7
Q ss_pred hhhcCeEEEEEecCCCCCCCcH-HH-HHHh-----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcCCc
Q 017132 118 LKLMDVVIEVRDARIPLSTTHP-LM-DQWL-----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLGM 188 (376)
Q Consensus 118 idr~dlILeV~DaR~p~~~~~~-~l-~~~l-----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~g~ 188 (376)
...+|.++.|+|..++.+..+. .+ ..+. .+.|+++|.||+||...+. ......+....+..++.+||++|.
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH 188 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 5668999999997664322211 11 1121 2579999999999964321 111112223445678899999999
Q ss_pred chhhhhHHHHH
Q 017132 189 GTMKLSRLAKA 199 (376)
Q Consensus 189 gi~~L~~~l~~ 199 (376)
|+.++.+.+.+
T Consensus 189 ~v~elf~~l~~ 199 (211)
T 2g3y_A 189 NVKELFEGIVR 199 (211)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99988766543
No 379
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.35 E-value=0.0041 Score=54.89 Aligned_cols=102 Identities=11% Similarity=-0.003 Sum_probs=62.3
Q ss_pred cccCCcEEEEcCCCCCcc-cChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCH
Q 017132 84 ADLDADLYYWTKSLRPVQ-WYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISM 162 (376)
Q Consensus 84 ~~~~~~~vi~~~~L~~~q-w~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~ 162 (376)
...+.|++++|-. .+ -.|++.. -..+.++.|+|+..+.. ...........|.++|+||+|+.+.
T Consensus 105 ~~~~~d~iiidt~---G~~~~~~~~~----------~~~~~~i~vvd~~~~~~--~~~~~~~~~~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 105 KFSDCDLLLIENV---GNLICPVDFD----------LGENYRVVMVSVTEGDD--VVEKHPEIFRVADLIVINKVALAEA 169 (221)
T ss_dssp GGTTCSEEEEEEE---EBSSGGGGCC----------CSCSEEEEEEEGGGCTT--HHHHCHHHHHTCSEEEEECGGGHHH
T ss_pred hcCCCCEEEEeCC---CCCCCCchhc----------cccCcEEEEEeCCCcch--hhhhhhhhhhcCCEEEEecccCCcc
Confidence 4456888888621 11 1233311 13577899999876532 1111111135789999999999654
Q ss_pred H--hHHHHHHHHHHh--CceEEEeeCcCCcchhhhhHHHHHh
Q 017132 163 A--DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRLAKAL 200 (376)
Q Consensus 163 ~--~~~~w~~~~~~~--g~~vi~iSa~~g~gi~~L~~~l~~l 200 (376)
. ......+.+... +..++.+|+++|.|+.++.+.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~ 211 (221)
T 2wsm_A 170 VGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGI 211 (221)
T ss_dssp HTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 2 233333444433 3578899999999999988776544
No 380
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.21 E-value=0.0084 Score=62.73 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCC
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMI 160 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~ 160 (376)
|||. .+...+...+..+|.++.|+|+..+......++.+.+ .+.|.++|+||+|+.
T Consensus 82 pG~~-~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 82 PGYG-DFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp CCSG-GGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred CCcc-chHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 5653 3445667788999999999998776543333333333 378999999999987
No 381
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.19 E-value=0.0077 Score=63.31 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=46.5
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM 162 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~ 162 (376)
+..+.+|| .|||. .+.......+..+|.++.|+|+..+.......+...+ .+.|.++|+||+|+...
T Consensus 76 ~~~i~liD--------TPG~~-df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 76 DHRINIID--------TPGHV-DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp TEEEEEEC--------CCSST-TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred CeEEEEEE--------CcCcc-chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 45566666 25653 3455666778999999999999876654333332222 37899999999999753
No 382
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.10 E-value=0.005 Score=58.45 Aligned_cols=96 Identities=16% Similarity=0.048 Sum_probs=58.7
Q ss_pred HHHHhcCCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcchhhhhHHHHHhhhhhhhhhhccCCCCCceEE
Q 017132 141 MDQWLGNRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLSRLAKALASDVNVKRRSKGLLPRAVRA 220 (376)
Q Consensus 141 l~~~l~~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l~~l~~~~~~~~~~~~~~~~~~~v 220 (376)
+++++....-.+|++|.|..+++.. +.-++.+.+++.++......+..|...+............. -..-...-|
T Consensus 73 ler~l~~~~P~IIltrg~~~peeli----e~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~-~v~~~g~~v 147 (314)
T 1ko7_A 73 MRKLCRPETPAIIVTRDLEPPEELI----EAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGV-LVDVYGVGV 147 (314)
T ss_dssp HHHHCCTTCCCEEECTTCCCCHHHH----HHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESE-EEEETTEEE
T ss_pred HHHHhcCCCCEEEEeCCCCCCHHHH----HHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEE-EEEECCEEE
Confidence 4555554555678999999876543 33445577777777666666666666654321110000000 000013459
Q ss_pred eEeecCCCCcchhhhhhhhcc
Q 017132 221 GIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 221 ~lvG~pNvGKSTLiN~L~~~~ 241 (376)
+|+|.+++||||+.++|.++.
T Consensus 148 l~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 148 LITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EEEESTTSSHHHHHHHHHHTT
T ss_pred EEEeCCCCCHHHHHHHHHhcC
Confidence 999999999999999999754
No 383
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=96.10 E-value=0.0045 Score=63.02 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=46.6
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA 163 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~ 163 (376)
+..+.++| .||| ..+...+...+..+|.++.|+|+..+.......+.... .+.|+++++||+|+....
T Consensus 81 ~~~i~liD--------TPG~-~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 81 DCLVNLLD--------TPGH-EDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp TEEEEEEC--------CCCS-TTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSC
T ss_pred CeEEEEEE--------CCCC-hhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCcccc
Confidence 44566666 2565 23344566778999999999999887544333343333 268999999999998643
No 384
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.08 E-value=0.00035 Score=70.73 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=53.5
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH--hHHHHH---HHH-HHhC--ceEEEeeCc
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA--DRNAWA---TYF-AKQG--TKVIFSNGQ 185 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~--~~~~w~---~~~-~~~g--~~vi~iSa~ 185 (376)
..+..+|+++.|+|+.++......+..... .+.|.++++||+|+.... ...... ..+ ...+ ..++++|++
T Consensus 70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAk 149 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAK 149 (501)
T ss_dssp SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred HHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence 446889999999999876544433332222 378999999999997521 110000 000 0111 468899999
Q ss_pred CCcchhhhhHHHH
Q 017132 186 LGMGTMKLSRLAK 198 (376)
Q Consensus 186 ~g~gi~~L~~~l~ 198 (376)
+|.|+.+|.+.+.
T Consensus 150 tG~gI~eLle~I~ 162 (501)
T 1zo1_I 150 AGTGIDELLDAIL 162 (501)
T ss_dssp TCTTCTTHHHHTT
T ss_pred eccCcchhhhhhh
Confidence 9999998877654
No 385
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.04 E-value=0.0049 Score=63.83 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.0
Q ss_pred eEEeEeecCCCCcchhhhhhhhc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
+.++|||-+|+|||||+|+|+|-
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSC
T ss_pred CeEEEECCCCChHHHHHHHHhCC
Confidence 35999999999999999999975
No 386
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.90 E-value=0.0036 Score=57.07 Aligned_cols=110 Identities=10% Similarity=0.043 Sum_probs=62.9
Q ss_pred CCcEEEEcCCCCCcccChh-----HHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHhc-------CCCeEEEE
Q 017132 87 DADLYYWTKSLRPVQWYPG-----HIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWLG-------NRKRILVL 154 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PG-----h~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l~-------~kp~ilVl 154 (376)
+..+.+|| +|.++... .++.+.+.+...+..+|+++.|+|+.. .......+..++. .+|.++|+
T Consensus 70 ~~~i~iiD---TpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv 145 (260)
T 2xtp_A 70 NREIVIID---TPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLF 145 (260)
T ss_dssp TEEEEEEE---CCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEE
T ss_pred CCEEEEEE---CcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEE
Confidence 45677887 44432211 112334444456788999999999874 2322222322221 46888888
Q ss_pred E-ccCCCCHHhHHHHH---------HHHHHhCce---E--EEeeCcCCcchhhhhHHHHHhh
Q 017132 155 N-REDMISMADRNAWA---------TYFAKQGTK---V--IFSNGQLGMGTMKLSRLAKALA 201 (376)
Q Consensus 155 N-K~DL~~~~~~~~w~---------~~~~~~g~~---v--i~iSa~~g~gi~~L~~~l~~l~ 201 (376)
| |+|+.... ...+. ......+.. . +.+|++.|.|+.++.+.+.++.
T Consensus 146 ~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 146 THKEDLNGGS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp ECGGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred EcccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHH
Confidence 8 99998542 22211 122233321 1 5678888889888877665544
No 387
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.88 E-value=0.0084 Score=58.78 Aligned_cols=48 Identities=19% Similarity=0.159 Sum_probs=35.7
Q ss_pred CCCeEEEEEccCCCCHHhHHHHHHHHHHhCceEEEeeCcCCcchhhhh
Q 017132 147 NRKRILVLNREDMISMADRNAWATYFAKQGTKVIFSNGQLGMGTMKLS 194 (376)
Q Consensus 147 ~kp~ilVlNK~DL~~~~~~~~w~~~~~~~g~~vi~iSa~~g~gi~~L~ 194 (376)
.+|.++|+||+|+........+.+.+...+..++++||+.+.|+.+|.
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~ 261 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAA 261 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCS
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHH
Confidence 589999999999985544455555444446689999999988876653
No 388
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.85 E-value=0.0023 Score=55.25 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=26.8
Q ss_pred EEeEeecCCCCcchhhhhhhhccc-ccccCCCCceeEE
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVL 255 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pg~T~~~ 255 (376)
.++|+|.+++|||||+|.|.+... ........+|+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~ 44 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPP 44 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCC
Confidence 489999999999999999987532 1234445566553
No 389
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.83 E-value=0.017 Score=50.01 Aligned_cols=83 Identities=13% Similarity=0.003 Sum_probs=51.4
Q ss_pred HhhhcCeEEEEEecCCCCCCCcH-H----HHHHh--cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcCC
Q 017132 117 QLKLMDVVIEVRDARIPLSTTHP-L----MDQWL--GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG 187 (376)
Q Consensus 117 vidr~dlILeV~DaR~p~~~~~~-~----l~~~l--~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~g 187 (376)
....+|.++.|+|..++.+..+. . +.... .+.|+++|.||+|+...+. ......+....+..++.+||++|
T Consensus 77 ~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g 156 (192)
T 2cjw_A 77 CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQ 156 (192)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccC
Confidence 35568999999998764332221 1 11111 2578999999999965321 11111112234567888999999
Q ss_pred cchhhhhHHHHH
Q 017132 188 MGTMKLSRLAKA 199 (376)
Q Consensus 188 ~gi~~L~~~l~~ 199 (376)
.|+.++.+.+.+
T Consensus 157 ~~v~~lf~~l~~ 168 (192)
T 2cjw_A 157 HNVKELFEGIVR 168 (192)
T ss_dssp BSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999988665543
No 390
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.82 E-value=0.014 Score=59.71 Aligned_cols=58 Identities=17% Similarity=0.169 Sum_probs=45.1
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS 161 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~ 161 (376)
-||| ..+..++...+.-+|-.+.|+||-.+....-..+.+.. ++.|+++++||+|...
T Consensus 107 TPGH-vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 107 TPGH-QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCG-GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCC
T ss_pred CCCc-HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchh
Confidence 4898 56788888899999999999999887654443333332 4799999999999864
No 391
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.76 E-value=0.0083 Score=57.98 Aligned_cols=79 Identities=8% Similarity=0.073 Sum_probs=40.9
Q ss_pred CeEEEEEec-CCCCCCCcHHHHHHhc-CCCeEEEEEccCCCCHHhHHHHH----HHHHHhCceEEEeeCcCCcchhhhhH
Q 017132 122 DVVIEVRDA-RIPLSTTHPLMDQWLG-NRKRILVLNREDMISMADRNAWA----TYFAKQGTKVIFSNGQLGMGTMKLSR 195 (376)
Q Consensus 122 dlILeV~Da-R~p~~~~~~~l~~~l~-~kp~ilVlNK~DL~~~~~~~~w~----~~~~~~g~~vi~iSa~~g~gi~~L~~ 195 (376)
++++++++. +.+....+.++...+. ..|+++|+||+|+.+..+..... +.....+..++.+|++.+.+...+..
T Consensus 147 ~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~ 226 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKE 226 (361)
T ss_dssp CEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHH
T ss_pred EEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHH
Confidence 456666654 5444444434444443 67999999999999877654432 22333456778889988877333444
Q ss_pred HHHHh
Q 017132 196 LAKAL 200 (376)
Q Consensus 196 ~l~~l 200 (376)
.+..+
T Consensus 227 l~~~i 231 (361)
T 2qag_A 227 QTRLL 231 (361)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 392
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=95.71 E-value=0.012 Score=61.75 Aligned_cols=67 Identities=19% Similarity=0.279 Sum_probs=45.6
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM 162 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~ 162 (376)
+..+.++| + |||. .+..+....+..+|.+|.|+|+..+.......+...+ .+.|.++|+||+|+...
T Consensus 74 ~~~i~liD---T-----PG~~-df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 74 GHRVNIID---T-----PGHV-DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp TEEEEEEC---C-----CCCS-SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred CeeEEEEE---C-----cCCc-chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 45566666 2 4542 2334556678889999999999876554443333332 37899999999999853
No 393
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.66 E-value=0.017 Score=55.23 Aligned_cols=83 Identities=13% Similarity=0.033 Sum_probs=50.2
Q ss_pred HhhhcCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCC-HHhHHHHHHHHHH-----h------CceEEEeeC
Q 017132 117 QLKLMDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMIS-MADRNAWATYFAK-----Q------GTKVIFSNG 184 (376)
Q Consensus 117 vidr~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~-~~~~~~w~~~~~~-----~------g~~vi~iSa 184 (376)
+.+.+|+++.|+|+..+... ..+...+...+.++|+||+|+.+ ......+...+.. . ..+++++|+
T Consensus 165 v~~~~d~vl~v~d~~~~~~~--~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sa 242 (337)
T 2qm8_A 165 VADLTDFFLVLMLPGAGDEL--QGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISG 242 (337)
T ss_dssp HHTTSSEEEEEECSCC--------CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBT
T ss_pred HHhhCCEEEEEEcCCCcccH--HHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeC
Confidence 45899999999997533210 00100111246688899999875 3322222222221 1 346889999
Q ss_pred cCCcchhhhhHHHHHhh
Q 017132 185 QLGMGTMKLSRLAKALA 201 (376)
Q Consensus 185 ~~g~gi~~L~~~l~~l~ 201 (376)
.++.|+.+|.+.+.++.
T Consensus 243 l~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 243 LHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999988877653
No 394
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=95.64 E-value=0.035 Score=58.43 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=45.6
Q ss_pred CcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCH
Q 017132 88 ADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISM 162 (376)
Q Consensus 88 ~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~ 162 (376)
.++.+|| -|||. .+..++...+..+|.+|.|+|+..+.......+.... .+.|.++|+||+|+...
T Consensus 82 ~~i~liD--------TPG~~-df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 82 HRINIID--------TPGHV-DFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eeEEEEe--------CCCcc-chHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 4556666 26763 4556667788999999999999876543333332222 37899999999998753
No 395
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.46 E-value=0.011 Score=60.31 Aligned_cols=57 Identities=21% Similarity=0.378 Sum_probs=34.3
Q ss_pred EEeEeecCCCCcchhhhhhhhcccc---------------cccC------CCCceeEE---EEEEeCCeEEEEeCCCCcC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMC---------------PAAP------RPGVTRVL---KWVRFGKDLEFLDSPGIIP 274 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~---------------~v~~------~pg~T~~~---~~~~~~~~i~l~DTpG~i~ 274 (376)
+|+|+|...+|||||.-+|+-...+ .+.| .-|.|... ....-+..+-|+||||-+.
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 6999999999999999999622110 1111 12433321 1222255789999999986
Q ss_pred C
Q 017132 275 M 275 (376)
Q Consensus 275 ~ 275 (376)
.
T Consensus 113 F 113 (548)
T 3vqt_A 113 F 113 (548)
T ss_dssp C
T ss_pred H
Confidence 5
No 396
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.42 E-value=0.02 Score=56.83 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.8
Q ss_pred CceEEeEeecCCCCcchhhhhhh
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLL 238 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~ 238 (376)
.+..|+++|.+||||||+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 35679999999999999999997
No 397
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.39 E-value=0.032 Score=49.16 Aligned_cols=77 Identities=13% Similarity=0.050 Sum_probs=47.3
Q ss_pred cCeEEEEEecCCCCCCCcHHHHHHhcCCCeEEEEEccCCCCHH--hHHHHHHHHHHh--CceEEEeeCcCCcchhhhhHH
Q 017132 121 MDVVIEVRDARIPLSTTHPLMDQWLGNRKRILVLNREDMISMA--DRNAWATYFAKQ--GTKVIFSNGQLGMGTMKLSRL 196 (376)
Q Consensus 121 ~dlILeV~DaR~p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~--~~~~w~~~~~~~--g~~vi~iSa~~g~gi~~L~~~ 196 (376)
.+.+++|+|+..+....... ... ..+|.++|+||+|+.+.. ......+.+... +..++.+|+++|.|+.++.+.
T Consensus 140 ~~~~~~v~~~~~~~~~~~~~-~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 217 (226)
T 2hf9_A 140 THKRIVVISTTEGDDTIEKH-PGI-MKTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEF 217 (226)
T ss_dssp CSEEEEEEEGGGCTTTTTTC-HHH-HTTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHH
T ss_pred cCcEEEEEecCcchhhHhhh-hhH-hhcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHH
Confidence 34566778864322211111 111 357899999999997542 223333334333 457889999999999998776
Q ss_pred HHH
Q 017132 197 AKA 199 (376)
Q Consensus 197 l~~ 199 (376)
+.+
T Consensus 218 l~~ 220 (226)
T 2hf9_A 218 IEK 220 (226)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 398
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.32 E-value=0.009 Score=57.37 Aligned_cols=90 Identities=13% Similarity=0.144 Sum_probs=53.9
Q ss_pred HHHHHHHHh-hhcCeEEEEEecCCCCCCCcH-HHHHHhc--CCCeEEEEEccCCCCHHh-HHHHHHH-H--HHhC-ceEE
Q 017132 110 TEKELKDQL-KLMDVVIEVRDARIPLSTTHP-LMDQWLG--NRKRILVLNREDMISMAD-RNAWATY-F--AKQG-TKVI 180 (376)
Q Consensus 110 ~~k~l~~vi-dr~dlILeV~DaR~p~~~~~~-~l~~~l~--~kp~ilVlNK~DL~~~~~-~~~w~~~-~--~~~g-~~vi 180 (376)
....+...+ ...++||.|+|+.......+. .+.+.+. +.|.++|+||+|+.++.. ...+.+. . .+.| ..++
T Consensus 156 ~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~ 235 (353)
T 2x2e_A 156 IRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVV 235 (353)
T ss_dssp HHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECC
T ss_pred HHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEE
Confidence 334444555 455688888888765544433 2444443 679999999999986543 1122110 0 0112 2456
Q ss_pred EeeCcCCcchhhhhHHHHH
Q 017132 181 FSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 181 ~iSa~~g~gi~~L~~~l~~ 199 (376)
.+|++.+.|+.+|.+.+.+
T Consensus 236 ~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 236 NRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CCCHHHHHTTCCHHHHHHH
T ss_pred eCCcccccccccHHHHHHH
Confidence 6889888888887766544
No 399
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.29 E-value=0.013 Score=51.42 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=32.2
Q ss_pred HhhhcCeEEEEEecC-CCCCCC--cHHHHHHh--------cCCCeEEEEEccCCCCHHhH
Q 017132 117 QLKLMDVVIEVRDAR-IPLSTT--HPLMDQWL--------GNRKRILVLNREDMISMADR 165 (376)
Q Consensus 117 vidr~dlILeV~DaR-~p~~~~--~~~l~~~l--------~~kp~ilVlNK~DL~~~~~~ 165 (376)
.+..+|.++.|+|+. .+.+.. ...+..++ .+.|+++|.||+|+.+....
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 138 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 138 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence 345599999999998 443321 12222222 36789999999999876443
No 400
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=95.22 E-value=0.0093 Score=62.08 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=45.9
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCC
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMIS 161 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~ 161 (376)
-||| ..+..++...+.-+|-.+.|+||..+....-..+.+.. .+.|+++++||+|...
T Consensus 74 TPGH-~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 74 TPGH-MDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNG 133 (638)
T ss_dssp CCCS-SSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSS
T ss_pred CCCc-HHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEecccccc
Confidence 3898 56788888899999999999999987765544444443 3789999999999753
No 401
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.11 E-value=0.0068 Score=52.51 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=20.9
Q ss_pred EEeEeecCCCCcchhhhhhhhcc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
+++|+|-+++|||||++.|++.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999753
No 402
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.91 E-value=0.048 Score=52.27 Aligned_cols=85 Identities=9% Similarity=0.008 Sum_probs=52.2
Q ss_pred HHHHHHHhhhcCeEEEEEecCCCCCCCc--HHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHHH----HhCceEEEe
Q 017132 111 EKELKDQLKLMDVVIEVRDARIPLSTTH--PLMDQWLG--NRKRILVLNREDMISMADRNAWATYFA----KQGTKVIFS 182 (376)
Q Consensus 111 ~k~l~~vidr~dlILeV~DaR~p~~~~~--~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~~----~~g~~vi~i 182 (376)
...+...+.++|+|+.++|+........ ..+.+.+. ++|.++|+||+|++++... +.+.+. ..+.+++.+
T Consensus 163 ~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v 240 (360)
T 3t34_A 163 ENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTD--AVEILEGRSFKLKYPWVGV 240 (360)
T ss_dssp HHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCC--SHHHHTTSSSCCSSCCEEE
T ss_pred HHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCccc--HHHHHcCccccccCCeEEE
Confidence 4445577999999999997643221111 23333332 5789999999999875431 222222 234566778
Q ss_pred eCcCCcchhhhhHHH
Q 017132 183 NGQLGMGTMKLSRLA 197 (376)
Q Consensus 183 Sa~~g~gi~~L~~~l 197 (376)
+++.+.++.......
T Consensus 241 ~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 241 VNRSQADINKNVDMI 255 (360)
T ss_dssp CCCCHHHHHTTCCHH
T ss_pred EECChHHhccCCCHH
Confidence 888887776654443
No 403
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.83 E-value=0.012 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.7
Q ss_pred eEEeEeecCCCCcchhhhhhhhc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
..++|+|.+++|||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999864
No 404
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.79 E-value=0.0086 Score=52.53 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-+++|||||+|.|.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999873
No 405
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.73 E-value=0.012 Score=52.01 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.2
Q ss_pred eEEeEeecCCCCcchhhhhhhhcc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
..++|+|.++||||||++.|.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 348999999999999999998753
No 406
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.67 E-value=0.014 Score=51.31 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.5
Q ss_pred ceEEeEeecCCCCcchhhhhhhhc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
+..|+|+|-+++|||||++.|.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999874
No 407
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.64 E-value=0.05 Score=55.52 Aligned_cols=61 Identities=21% Similarity=0.117 Sum_probs=41.8
Q ss_pred HHHHHHhhhcCeEEEEEecCCC-CCCCcHHHHHHhc--CCCeEEEEEccCCCCHHhHHHHHHHH
Q 017132 112 KELKDQLKLMDVVIEVRDARIP-LSTTHPLMDQWLG--NRKRILVLNREDMISMADRNAWATYF 172 (376)
Q Consensus 112 k~l~~vidr~dlILeV~DaR~p-~~~~~~~l~~~l~--~kp~ilVlNK~DL~~~~~~~~w~~~~ 172 (376)
+.+...+.++|+|+.|+|+..+ .......+...+. ..|.++|+||+|+++.++.......+
T Consensus 180 ~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l 243 (550)
T 2qpt_A 180 AVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGAL 243 (550)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHh
Confidence 4455678999999999999764 2222233333333 46899999999999887665544433
No 408
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.46 E-value=0.012 Score=50.91 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++++|++|+|||||+|.|.+.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4899999999999999999864
No 409
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.37 E-value=0.013 Score=51.00 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=20.3
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-+++|||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999999874
No 410
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.32 E-value=0.013 Score=51.57 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.7
Q ss_pred EEeEeecCCCCcchhhhhhhhcc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
.++|+|-+++|||||+|.|++-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999753
No 411
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.19 E-value=0.012 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.4
Q ss_pred eEEeEeecCCCCcchhhhhhhhc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
..|+|+|.+++|||||.+.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 34899999999999999999864
No 412
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.10 E-value=0.016 Score=51.88 Aligned_cols=23 Identities=39% Similarity=0.382 Sum_probs=21.0
Q ss_pred EEeEeecCCCCcchhhhhhhhcc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
.++|+|-++||||||+|.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48999999999999999999854
No 413
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.05 E-value=0.016 Score=51.69 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.3
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-+++|||||+|.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999974
No 414
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.04 E-value=0.048 Score=46.51 Aligned_cols=57 Identities=16% Similarity=0.216 Sum_probs=35.3
Q ss_pred HHHHhhhcCeEEEEEecC-CCCCCCc--HHHHHHh--------cCCCeEEEEEccCCCCHHhHHHHHH
Q 017132 114 LKDQLKLMDVVIEVRDAR-IPLSTTH--PLMDQWL--------GNRKRILVLNREDMISMADRNAWAT 170 (376)
Q Consensus 114 l~~vidr~dlILeV~DaR-~p~~~~~--~~l~~~l--------~~kp~ilVlNK~DL~~~~~~~~w~~ 170 (376)
+...+..+|.++.|+|+. .+.+... ..+..++ .+.|+++|+||+|+.+........+
T Consensus 112 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 179 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 179 (193)
T ss_dssp HHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred HHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHH
Confidence 344567799999999987 3221111 1122222 2689999999999987654444333
No 415
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.04 E-value=0.0087 Score=51.60 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.1
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|||.+++|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999863
No 416
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=94.03 E-value=0.014 Score=60.76 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=36.6
Q ss_pred EEeEeecCCCCcchhhhhhhhcccc-----c------ccCC------CCceeEEEEEE---eCCeEEEEeCCCCcCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMC-----P------AAPR------PGVTRVLKWVR---FGKDLEFLDSPGIIPM 275 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~-----~------v~~~------pg~T~~~~~~~---~~~~i~l~DTpG~i~~ 275 (376)
+|+|+|...+|||||..+|+-.... . +.|. -|.|....... -+..+.|+||||-+..
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 5899999999999999998632111 1 1111 14444432222 2557889999999754
No 417
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.95 E-value=0.11 Score=44.78 Aligned_cols=86 Identities=12% Similarity=0.009 Sum_probs=54.4
Q ss_pred HHhhhcCeEEEEEecCCCCCCCcH-H-HHHHh----cCCCeEEEEEccCCCCHHh--HHHHHHHHHHhCceEEEeeCcCC
Q 017132 116 DQLKLMDVVIEVRDARIPLSTTHP-L-MDQWL----GNRKRILVLNREDMISMAD--RNAWATYFAKQGTKVIFSNGQLG 187 (376)
Q Consensus 116 ~vidr~dlILeV~DaR~p~~~~~~-~-l~~~l----~~kp~ilVlNK~DL~~~~~--~~~w~~~~~~~g~~vi~iSa~~g 187 (376)
.....+|.++.|+|...+.+..+. . +..+. ...|.++|+||+|+..... .........+.+..++.+|++.+
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~ 152 (199)
T 2f9l_A 73 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDS 152 (199)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 456788999999998765432221 1 11111 2568899999999964321 11122233445666777999999
Q ss_pred cchhhhhHHHHHhh
Q 017132 188 MGTMKLSRLAKALA 201 (376)
Q Consensus 188 ~gi~~L~~~l~~l~ 201 (376)
.|+.++.+.+.+..
T Consensus 153 ~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 153 TNVEEAFKNILTEI 166 (199)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99998877665543
No 418
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.93 E-value=0.022 Score=49.82 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.3
Q ss_pred ceEEeEeecCCCCcchhhhhhhhc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
+..|+|+|-+++|||||++.|.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999874
No 419
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.91 E-value=0.017 Score=49.84 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.1
Q ss_pred EeEeecCCCCcchhhhhhhhcc
Q 017132 220 AGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
++|+|-+++|||||++.|++..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7999999999999999999743
No 420
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.80 E-value=0.02 Score=54.13 Aligned_cols=21 Identities=43% Similarity=0.645 Sum_probs=19.8
Q ss_pred EEeEeecCCCCcchhhhhhhh
Q 017132 219 RAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (376)
.++|||.+++|||||++.|.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 599999999999999999986
No 421
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.77 E-value=0.024 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.7
Q ss_pred eEEeEeecCCCCcchhhhhhhhc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
..++|+|.+++||||+++.|.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999864
No 422
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=93.76 E-value=0.12 Score=46.30 Aligned_cols=86 Identities=9% Similarity=-0.039 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCCC-CCcHHHH---HHh------cCCCeEEEEEcc-CCCCHHhHHHHHHHHH---
Q 017132 108 AKTEKELKDQLKLMDVVIEVRDARIPLS-TTHPLMD---QWL------GNRKRILVLNRE-DMISMADRNAWATYFA--- 173 (376)
Q Consensus 108 ~~~~k~l~~vidr~dlILeV~DaR~p~~-~~~~~l~---~~l------~~kp~ilVlNK~-DL~~~~~~~~w~~~~~--- 173 (376)
.++......+.+.+|.|++|+|+.+... ....++. .++ .+.|+++..||. |+...-...+..+.+.
T Consensus 113 ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~ 192 (227)
T 3l82_B 113 YSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL 192 (227)
T ss_dssp ----CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGG
T ss_pred HHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcC
Confidence 3444334478899999999999976532 2333442 222 235788888996 6643211122222221
Q ss_pred -HhCceEEEeeCcCCcchhhh
Q 017132 174 -KQGTKVIFSNGQLGMGTMKL 193 (376)
Q Consensus 174 -~~g~~vi~iSa~~g~gi~~L 193 (376)
.....+..+||.+|.|+.+-
T Consensus 193 l~R~W~Iq~csA~TGeGL~EG 213 (227)
T 3l82_B 193 LNHPWLVQDTEAETLTGFLNG 213 (227)
T ss_dssp GCSCEEEEEEETTTCTTHHHH
T ss_pred CCCCEEEEEeECCCCcCHHHH
Confidence 12245778999999997653
No 423
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.70 E-value=0.021 Score=48.22 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.2
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.|+|+|.+++||||+.+.|.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 424
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.68 E-value=0.023 Score=50.95 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=20.3
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||+|.|+|-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 425
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.59 E-value=0.022 Score=49.05 Aligned_cols=21 Identities=38% Similarity=0.346 Sum_probs=19.4
Q ss_pred EEeEeecCCCCcchhhhhhhh
Q 017132 219 RAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (376)
.++|+|.+++|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 379999999999999999985
No 426
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.56 E-value=0.026 Score=49.24 Aligned_cols=23 Identities=13% Similarity=0.319 Sum_probs=20.4
Q ss_pred eEEeEeecCCCCcchhhhhhhhc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
..++|+|.+++|||||++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999863
No 427
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.56 E-value=0.029 Score=49.85 Aligned_cols=29 Identities=14% Similarity=-0.050 Sum_probs=23.6
Q ss_pred EEeEeecCCCCcchhhhhhhhcccccccCC
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRRMCPAAPR 248 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~~~~v~~~ 248 (376)
.++|+|..++|||||++.|+|- ....+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 4899999999999999999986 4444443
No 428
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.52 E-value=0.024 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.7
Q ss_pred EEeEeecCCCCcchhhhhhhhcc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
.++|+|-.++|||||++.|.|-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48999999999999999999743
No 429
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.46 E-value=0.023 Score=48.52 Aligned_cols=20 Identities=20% Similarity=0.390 Sum_probs=18.2
Q ss_pred EEeEeecCCCCcchhhhhhh
Q 017132 219 RAGIVGYPNVGKSSLINRLL 238 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~ 238 (376)
.++++|.+++|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 48999999999999999765
No 430
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=93.31 E-value=0.014 Score=56.27 Aligned_cols=104 Identities=14% Similarity=0.105 Sum_probs=60.4
Q ss_pred CCcEEEEcCCCCCcccChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCC---------CCc---HHHHHHh-----cCCC
Q 017132 87 DADLYYWTKSLRPVQWYPGHIAKTEKELKDQLKLMDVVIEVRDARIPLS---------TTH---PLMDQWL-----GNRK 149 (376)
Q Consensus 87 ~~~~vi~~~~L~~~qw~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~---------~~~---~~l~~~l-----~~kp 149 (376)
+..+-+|| .+.| ++..+......+.++.||+|+|..+... ... ..+..+. .+.|
T Consensus 192 ~~~l~iwD---t~GQ------e~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~p 262 (353)
T 1cip_A 192 DLHFKMFD---VGGQ------RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTS 262 (353)
T ss_dssp TEEEEEEE---ECCS------GGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSE
T ss_pred CeeEEEEe---CCCc------hhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCc
Confidence 44566666 2333 3333333356789999999999876421 111 1122222 2578
Q ss_pred eEEEEEccCCCC--------------------HHhHHHHHHH-HH-------HhCceEEEeeCcCCcchhhhhHHHHH
Q 017132 150 RILVLNREDMIS--------------------MADRNAWATY-FA-------KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 150 ~ilVlNK~DL~~--------------------~~~~~~w~~~-~~-------~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
+++++||+||.. .++...|... |. ..+..++++||+.+.|+..+.+.+..
T Consensus 263 iiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~ 340 (353)
T 1cip_A 263 IILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 340 (353)
T ss_dssp EEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred EEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence 999999999852 2223333321 11 12345678999999998877655443
No 431
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.31 E-value=0.027 Score=50.97 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=20.4
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|..++|||||++.|+|-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 432
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.28 E-value=0.028 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.9
Q ss_pred EEeEeecCCCCcchhhhhhhhcc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
.++|+|..++|||||++.|+|-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999753
No 433
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.25 E-value=0.037 Score=46.88 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=20.0
Q ss_pred eEEeEeecCCCCcchhhhhhhh
Q 017132 218 VRAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~ 239 (376)
..++|+|.+++||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999999975
No 434
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.21 E-value=0.035 Score=48.40 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.1
Q ss_pred ceEEeEeecCCCCcchhhhhhhhc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
+..|+|+|.+++||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999864
No 435
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.21 E-value=0.029 Score=51.62 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEeEeecCCCCcchhhhhhhh
Q 017132 219 RAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (376)
.++|+|-+++|||||++.|.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 499999999999999999986
No 436
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.16 E-value=0.029 Score=51.37 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=20.4
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||+|.|+|-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999974
No 437
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.16 E-value=0.031 Score=48.57 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.6
Q ss_pred EEeEeecCCCCcchhhhhhhh
Q 017132 219 RAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (376)
.|+|+|.+++||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999986
No 438
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.15 E-value=0.026 Score=49.30 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++++|.+++|||||++.|++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4899999999999999999875
No 439
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.14 E-value=0.03 Score=51.07 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||++.|+|-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 440
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.14 E-value=0.031 Score=50.39 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.2
Q ss_pred ceEEeEeecCCCCcchhhhhhh
Q 017132 217 AVRAGIVGYPNVGKSSLINRLL 238 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~ 238 (376)
+..|+|+|.+++|||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3469999999999999999998
No 441
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.13 E-value=0.03 Score=50.84 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=20.3
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||++.|+|-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999974
No 442
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=93.12 E-value=0.1 Score=54.94 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHHh--cCCCeEEEEEccCCCCHH
Q 017132 103 YPGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQWL--GNRKRILVLNREDMISMA 163 (376)
Q Consensus 103 ~PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~ 163 (376)
-||| ..+..++...+.-+|-.+.|+|+-.+....-..+.+.. .+.|+++++||+|....+
T Consensus 92 TPGH-vDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 92 TPGH-VDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCSC-TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCC
T ss_pred CCCC-cccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCcc
Confidence 3888 56788888999999999999999887655444443332 388999999999987543
No 443
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.06 E-value=0.031 Score=49.91 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=15.1
Q ss_pred EEeEeecCCCCcchhhhhhh-hc
Q 017132 219 RAGIVGYPNVGKSSLINRLL-KR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~-~~ 240 (376)
.++|+|-+++|||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999999999 64
No 444
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=93.05 E-value=0.039 Score=59.24 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHhhhcCeEEEEEecCCCCCCCcHHHHHH--hcCCCeEEEEEccCCC
Q 017132 104 PGHIAKTEKELKDQLKLMDVVIEVRDARIPLSTTHPLMDQW--LGNRKRILVLNREDMI 160 (376)
Q Consensus 104 PGh~~~~~k~l~~vidr~dlILeV~DaR~p~~~~~~~l~~~--l~~kp~ilVlNK~DL~ 160 (376)
|||. .+..+....+..+|.++.|+|+..+.......+... ..+.|+++|+||+|+.
T Consensus 106 PG~~-df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 106 PGHV-DFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRA 163 (842)
T ss_dssp CCCC-SSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred cCch-hhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcc
Confidence 5552 344456677899999999999998765444333222 2378999999999986
No 445
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.05 E-value=0.029 Score=50.06 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=20.3
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||++.|+|-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999974
No 446
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.05 E-value=0.032 Score=50.24 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|..++|||||++.|+|-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999974
No 447
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.04 E-value=0.031 Score=51.57 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=20.4
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||+|.|+|-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4899999999999999999974
No 448
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.03 E-value=0.029 Score=51.60 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.3
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||++.|+|-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 449
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.03 E-value=0.033 Score=49.17 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.6
Q ss_pred eEEeEeecCCCCcchhhhhhhhc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
..|+|+|.+++||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999863
No 450
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.94 E-value=0.033 Score=51.72 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.3
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||++.|+|-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999974
No 451
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.93 E-value=0.041 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.5
Q ss_pred ceEEeEeecCCCCcchhhhhhhh
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~ 239 (376)
+..|.++|.|++||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999975
No 452
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.86 E-value=0.039 Score=46.55 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.0
Q ss_pred eEEeEeecCCCCcchhhhhhhh
Q 017132 218 VRAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~ 239 (376)
..|.++|.|++||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999985
No 453
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.81 E-value=0.035 Score=50.98 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||++.|+|-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4899999999999999999974
No 454
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.81 E-value=0.036 Score=50.69 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.8
Q ss_pred EEeEeecCCCCcchhhhhhhhcc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
.++|+|-.++|||||++.|+|--
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999853
No 455
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.81 E-value=0.036 Score=50.26 Aligned_cols=22 Identities=14% Similarity=0.295 Sum_probs=20.4
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||++.|+|-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999974
No 456
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.79 E-value=0.036 Score=51.12 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=20.4
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||++.|+|-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4899999999999999999974
No 457
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.77 E-value=0.035 Score=46.47 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=19.8
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.|+|+|.+++||||+.+.|..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999854
No 458
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.75 E-value=0.037 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=20.4
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||++.|+|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
No 459
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.74 E-value=0.085 Score=49.26 Aligned_cols=24 Identities=17% Similarity=0.027 Sum_probs=21.4
Q ss_pred CceEEeEeecCCCCcchhhhhhhh
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~ 239 (376)
.+..|+|+|-+++|||||.+.|.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999975
No 460
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.70 E-value=0.038 Score=51.00 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||+|.|+|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
No 461
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.69 E-value=0.039 Score=46.04 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=18.1
Q ss_pred EEeEeecCCCCcchhhhhh
Q 017132 219 RAGIVGYPNVGKSSLINRL 237 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L 237 (376)
.|+|+|.|++||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999999
No 462
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.66 E-value=0.038 Score=50.70 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=20.4
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||++.|+|-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 463
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.64 E-value=0.038 Score=51.36 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.4
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||++.|+|-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999974
No 464
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.64 E-value=0.038 Score=51.08 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=20.4
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||++.|+|-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999974
No 465
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=92.63 E-value=0.044 Score=52.94 Aligned_cols=92 Identities=13% Similarity=0.112 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhhcCeEEEEEecCCCC---------CCCc---HHHHHHh-----cCCCeEEEEEccCCCCH--------
Q 017132 108 AKTEKELKDQLKLMDVVIEVRDARIPL---------STTH---PLMDQWL-----GNRKRILVLNREDMISM-------- 162 (376)
Q Consensus 108 ~~~~k~l~~vidr~dlILeV~DaR~p~---------~~~~---~~l~~~l-----~~kp~ilVlNK~DL~~~-------- 162 (376)
++..+......+.++.||+|+|..+.. .+.. ..+..+. .+.|+++++||+||...
T Consensus 212 ~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~ 291 (362)
T 1zcb_A 212 RSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIK 291 (362)
T ss_dssp ------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGG
T ss_pred hhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchh
Confidence 443333335678999999999987631 0111 1122222 25689999999998521
Q ss_pred -------------HhHHHHH-HHHH-------HhCceEEEeeCcCCcchhhhhHHHHH
Q 017132 163 -------------ADRNAWA-TYFA-------KQGTKVIFSNGQLGMGTMKLSRLAKA 199 (376)
Q Consensus 163 -------------~~~~~w~-~~~~-------~~g~~vi~iSa~~g~gi~~L~~~l~~ 199 (376)
++...|. ..|. ..+..++++||+.+.|+..+.+.+.+
T Consensus 292 ~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 292 DYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp GTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence 2222222 1121 12345678999999999887655543
No 466
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.61 E-value=0.05 Score=47.46 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.4
Q ss_pred ceEEeEeecCCCCcchhhhhhhhc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
+..|+|+|.+++||||+.+.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999999864
No 467
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=92.60 E-value=0.15 Score=47.75 Aligned_cols=50 Identities=8% Similarity=0.094 Sum_probs=28.4
Q ss_pred CCCeEEEEEccCCCCHHhHH----HHHHHHHHhCceEEEeeCcCCcchhhhhHHH
Q 017132 147 NRKRILVLNREDMISMADRN----AWATYFAKQGTKVIFSNGQLGMGTMKLSRLA 197 (376)
Q Consensus 147 ~kp~ilVlNK~DL~~~~~~~----~w~~~~~~~g~~vi~iSa~~g~gi~~L~~~l 197 (376)
..++++|+||+|+.+.++.. ...+.....+..++.+|++.+ +++++...+
T Consensus 155 ~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l 208 (301)
T 2qnr_A 155 KVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQ 208 (301)
T ss_dssp TSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHH
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHH
Confidence 45899999999999865532 233444556777888999999 887765443
No 468
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.60 E-value=0.036 Score=48.40 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=26.5
Q ss_pred EeEeecCCCCcchhhhhhhhccc-ccccCCCCceeEE
Q 017132 220 AGIVGYPNVGKSSLINRLLKRRM-CPAAPRPGVTRVL 255 (376)
Q Consensus 220 v~lvG~pNvGKSTLiN~L~~~~~-~~v~~~pg~T~~~ 255 (376)
|.|+|-++|||+||++.|..+.. ...-..+.|||.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~p 40 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTP 40 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCC
Confidence 68999999999999999986532 1233556677754
No 469
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.56 E-value=0.04 Score=50.76 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=20.4
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||++.|+|-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999999974
No 470
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.55 E-value=0.042 Score=47.80 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.4
Q ss_pred eEEeEeecCCCCcchhhhhhhhc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
..|+|+|.+++||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999999754
No 471
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.55 E-value=0.025 Score=53.36 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.4
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|||-+++|||||++.|+|-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5999999999999999999974
No 472
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.54 E-value=0.042 Score=52.32 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.3
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-+++|||||+|+|.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999974
No 473
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.51 E-value=0.041 Score=50.34 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.8
Q ss_pred EEeEeecCCCCcchhhhhhhhcc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
.++|+|-.++|||||++.|+|-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999753
No 474
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.37 E-value=0.051 Score=51.32 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=21.9
Q ss_pred CceEEeEeecCCCCcchhhhhhhhc
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.+..|+|+|-+++|||||++.|.+-
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 3456999999999999999999874
No 475
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.37 E-value=0.049 Score=47.44 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=20.0
Q ss_pred eEEeEeecCCCCcchhhhhhhh
Q 017132 218 VRAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~ 239 (376)
..|+|+|.+++||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 476
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.30 E-value=0.042 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEeEeecCCCCcchhhhhhhhcc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
.++|+|..++|||||++.|.|-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 48999999999999999999743
No 477
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.25 E-value=0.048 Score=47.01 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.|+|+|.+++||||+.+.|.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 4899999999999999999853
No 478
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.25 E-value=0.046 Score=46.22 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.9
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.|.++|.|++||||+.+.|..+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999999853
No 479
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.24 E-value=0.046 Score=48.11 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=20.2
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|.+++|||||++.|++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999873
No 480
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.23 E-value=0.045 Score=46.39 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.9
Q ss_pred EEeEeecCCCCcchhhhhhhhcc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
.++++|-.++|||||++.|.+.-
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999754
No 481
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.14 E-value=0.051 Score=46.33 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.4
Q ss_pred ceEEeEeecCCCCcchhhhhhhh
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~ 239 (376)
+..|+++|.|++||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999974
No 482
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.13 E-value=0.048 Score=52.58 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=20.2
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-+++|||||+|+|.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999864
No 483
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.11 E-value=0.069 Score=45.70 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.0
Q ss_pred ceEEeEeecCCCCcchhhhhhhhc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
+..|.++|.+++||||+.+.|.+.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 456999999999999999999753
No 484
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.10 E-value=0.053 Score=46.62 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.4
Q ss_pred EEeEeecCCCCcchhhhhhhh
Q 017132 219 RAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (376)
.++++|++|+|||||++.|..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 485
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.10 E-value=0.052 Score=47.22 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.6
Q ss_pred EEeEeecCCCCcchhhhhhhh
Q 017132 219 RAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (376)
.|+|+|.|++||||+.+.|.+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999985
No 486
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.08 E-value=0.064 Score=46.79 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.8
Q ss_pred ceEEeEeecCCCCcchhhhhhhh
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~ 239 (376)
+..|+|+|.+++||||+++.|.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999975
No 487
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.08 E-value=0.055 Score=46.11 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.4
Q ss_pred EEeEeecCCCCcchhhhhhhh
Q 017132 219 RAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (376)
.|.|+|.|++||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999975
No 488
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.01 E-value=0.055 Score=51.08 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|+.++|||||+|.|.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 4799999999999999999964
No 489
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.97 E-value=0.052 Score=50.00 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=20.4
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||++.|+|-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999974
No 490
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.96 E-value=0.057 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCCcchhhhhhhhc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
+..|+|+|.|++||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999999864
No 491
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.88 E-value=0.099 Score=51.70 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.3
Q ss_pred CceEEeEeecCCCCcchhhhhhh
Q 017132 216 RAVRAGIVGYPNVGKSSLINRLL 238 (376)
Q Consensus 216 ~~~~v~lvG~pNvGKSTLiN~L~ 238 (376)
.+..|+++|.+||||||+...|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35578999999999999999997
No 492
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.78 E-value=0.063 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.7
Q ss_pred ceEEeEeecCCCCcchhhhhhhh
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~ 239 (376)
+..|+|+|.+++||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999999985
No 493
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=91.70 E-value=0.061 Score=50.31 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.4
Q ss_pred EEeEeecCCCCcchhhhhhhhc
Q 017132 219 RAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
.++|+|-.++|||||++.|+|-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4899999999999999999974
No 494
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.68 E-value=0.07 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.2
Q ss_pred ceEEeEeecCCCCcchhhhhhhhc
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
+..|+|+|-.++|||||++.|.+.
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999874
No 495
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.66 E-value=0.064 Score=45.66 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.9
Q ss_pred eEEeEeecCCCCcchhhhhhhh
Q 017132 218 VRAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~ 239 (376)
..|.|+|.|++||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 496
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.66 E-value=0.055 Score=52.16 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=19.6
Q ss_pred EEeEeecCCCCcchhhhhhhh
Q 017132 219 RAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (376)
.++|+|-+++|||||+|+|.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 499999999999999999975
No 497
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.65 E-value=0.069 Score=46.27 Aligned_cols=23 Identities=30% Similarity=0.227 Sum_probs=20.6
Q ss_pred eEEeEeecCCCCcchhhhhhhhc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKR 240 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~ 240 (376)
..|.|.|.|++||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999853
No 498
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.62 E-value=0.047 Score=52.50 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.6
Q ss_pred eEEeEeecCCCCcchhhhhhhhcc
Q 017132 218 VRAGIVGYPNVGKSSLINRLLKRR 241 (376)
Q Consensus 218 ~~v~lvG~pNvGKSTLiN~L~~~~ 241 (376)
-+++|+|-+++|||||++.|.|.-
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999753
No 499
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.62 E-value=0.069 Score=46.44 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=20.7
Q ss_pred ceEEeEeecCCCCcchhhhhhhh
Q 017132 217 AVRAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 217 ~~~v~lvG~pNvGKSTLiN~L~~ 239 (376)
+..|+|.|.+++||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45699999999999999999985
No 500
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.59 E-value=0.059 Score=52.18 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEeEeecCCCCcchhhhhhhh
Q 017132 219 RAGIVGYPNVGKSSLINRLLK 239 (376)
Q Consensus 219 ~v~lvG~pNvGKSTLiN~L~~ 239 (376)
.++|+|.+++|||||+++|.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 499999999999999999986
Done!