BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017133
(376 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 230/334 (68%), Positives = 272/334 (81%), Gaps = 12/334 (3%)
Query: 45 WMAMMQYP-AAAMAMMQQQQMMMYPHHYMPYGGGGHPYYQNGGGVKQQQQQQHG---LSN 100
WMA MQYP AAAM MMQQQQM+MYPH Y+PY G PY Q+ Q Q+G
Sbjct: 40 WMAAMQYPPAAAMMMMQQQQMLMYPHQYVPYNQG--PYQQH-----HPQLHQYGSYQQHQ 92
Query: 101 GKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYG 160
+Q+ + + + D+ KT+W+GDL HWMDET+LH+CFSHTG+V +VKVIRNK T QSEGYG
Sbjct: 93 HQQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYG 152
Query: 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFS-GSDRRTEACSDLSIFVGDLAPD 219
FVEF SRAAAE+VLQ+YSGS+MPN+DQPFR+NWA+FS G R E DLS+FVGDL+PD
Sbjct: 153 FVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPD 212
Query: 220 VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279
VTD +L ETFS +YPSVK AKV+IDSNTGR+KGYGFVRFGDENERSRA+TEMNG YCS+R
Sbjct: 213 VTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNR 272
Query: 280 PMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDV 339
MR+ +ATPK+A QQQ+SSQA++LAGG GSNG+ GSQSDGES NATIFVG +D DV
Sbjct: 273 QMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDV 332
Query: 340 SDEDLREPFSQFGEILSVKIPVGKGCGFVQFANR 373
DEDLR+PFSQFGE++SVKIPVGKGCGFVQFA+R
Sbjct: 333 IDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADR 366
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 39/196 (19%)
Query: 117 TIWIGDLFHWMDETFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++++GDL + + LH FS V + KV+ + TG+S+GYGFV F + L
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 176 SYSGSLMPNTDQPFRLNWATFS----------------------------GSDRRTEACS 207
+G+ N + R+ AT GS E+ +
Sbjct: 263 EMNGAYCSN--RQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGES-T 319
Query: 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267
+ +IFVG + PDV D L++ FS ++ V K+ + KG GFV+F D A
Sbjct: 320 NATIFVGGIDPDVIDEDLRQPFS-QFGEVVSVKIPVG------KGCGFVQFADRKSAEDA 372
Query: 268 MTEMNGVYCSSRPMRI 283
+ +NG +R+
Sbjct: 373 IESLNGTVIGKNTVRL 388
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 408 bits (1049), Expect = e-113, Method: Compositional matrix adjust.
Identities = 186/263 (70%), Positives = 232/263 (88%), Gaps = 1/263 (0%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
++++ KTIWIGDL WMDE++LH+CFS G+V++VK+IRNKQTGQSE YGFVEF + AAA
Sbjct: 79 SSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAA 138
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
EKVLQSY+G++MPNT+QPFRLNWA FS ++R E SD SIFVGDLA DVTD++L++TF+
Sbjct: 139 EKVLQSYNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFA 198
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
S+YPS+KGAKV++D+NTG +KGYGFVRFGDE+ERSRAMTEMNGVYCSSR MRI VATPKK
Sbjct: 199 SRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKK 258
Query: 291 ASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQ 350
S + +QYSSQA++L+GG SNGA GSQSDG+S+N TIFVG LDS+V+DE+LR+ F+Q
Sbjct: 259 PSAH-EQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQ 317
Query: 351 FGEILSVKIPVGKGCGFVQFANR 373
FGE++SVKIP GKGCGFVQF++R
Sbjct: 318 FGEVVSVKIPAGKGCGFVQFSDR 340
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 83/192 (43%), Gaps = 32/192 (16%)
Query: 117 TIWIGDLFHWMDETFLHNCF-SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+I++GDL + +T L + F S + KV+ + TG S+GYGFV F + + +
Sbjct: 178 SIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMT 237
Query: 176 SYSGSLM--------------PNTDQPFRLNWATFSGSDRRTEAC----------SDLSI 211
+G P+ + + SG A S+ +I
Sbjct: 238 EMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSSNTTI 297
Query: 212 FVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271
FVG L +VTD L+++F+ ++ V K+ KG GFV+F D + A+ ++
Sbjct: 298 FVGGLDSEVTDEELRQSFN-QFGEVVSVKIPAG------KGCGFVQFSDRSSAQEAIQKL 350
Query: 272 NGVYCSSRPMRI 283
+G + +R+
Sbjct: 351 SGAIIGKQAVRL 362
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 99 SNGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEG 158
SNG + + + TI++G L + + L F+ G+VV+VK+ K G
Sbjct: 278 SNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGK------G 331
Query: 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193
GFV+F R++A++ +Q SG+++ Q RL+W
Sbjct: 332 CGFVQFSDRSSAQEAIQKLSGAIIGK--QAVRLSW 364
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 407 bits (1047), Expect = e-113, Method: Compositional matrix adjust.
Identities = 192/262 (73%), Positives = 223/262 (85%), Gaps = 6/262 (2%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
D+ KT+W+GDL HWMDET+LH CFSHT +V +VKVIRNKQT QSEGYGFVEF SR+AAE+
Sbjct: 116 DDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEE 175
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFS-GSDRRTEACSDLSIFVGDLAPDVTDSILQETFSS 231
LQS+SG MPN +QPFRLNWA+FS G R +E DLSIFVGDLAPDV+D++L ETF+
Sbjct: 176 ALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAG 235
Query: 232 KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291
+YPSVKGAKV+IDSNTGR+KGYGFVRFGDENERSRAMTEMNG +CSSR MR+ +ATPK+A
Sbjct: 236 RYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRA 295
Query: 292 SGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQF 351
+ Y QQ SQAL LAGG G N GS SDGESNN+TIFVG LD+DV++EDL +PFS F
Sbjct: 296 AAYGQQNGSQALTLAGGHGGN-----GSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDF 350
Query: 352 GEILSVKIPVGKGCGFVQFANR 373
GE++SVKIPVGKGCGFVQFANR
Sbjct: 351 GEVVSVKIPVGKGCGFVQFANR 372
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 32/190 (16%)
Query: 117 TIWIGDLFHWMDETFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+I++GDL + + L F+ V KV+ + TG+S+GYGFV F + +
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 176 SYSGSLMPNTDQPFRLNWATF---------SGSDRRTEA-------------CSDLSIFV 213
+G+ + + R+ AT +GS T A ++ +IFV
Sbjct: 274 EMNGAFC--SSRQMRVGIATPKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFV 331
Query: 214 GDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
G L DVT+ L + FS + V K+ + KG GFV+F + A+ +NG
Sbjct: 332 GGLDADVTEEDLMQPFS-DFGEVVSVKIPVG------KGCGFVQFANRQSAEEAIGNLNG 384
Query: 274 VYCSSRPMRI 283
+R+
Sbjct: 385 TVIGKNTVRL 394
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 357 bits (915), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 188/350 (53%), Positives = 233/350 (66%), Gaps = 46/350 (13%)
Query: 27 SQPTPQQPYHWVPPHQQQWMAMMQYPAAAMAMMQQQQMMMYPHHYMPYGGGGHPYYQNGG 86
+ PTP P HW M+YP + QMM P + PY
Sbjct: 43 TSPTP--PPHW-----------MRYPPTVII---PHQMMYAPPPFPPY------------ 74
Query: 87 GVKQQQQQQHGLSNGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFS--HTGQVVN 144
Q H L + + + N N E KTIW+GDL HWMDE +L++ F+ ++V+
Sbjct: 75 ---HQYPNHHHLHHQSRGNKHQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVS 131
Query: 145 VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTE 204
VKVIRNK G SEGYGFVEF S A+KVL+ ++G+ MPNTDQPFRLNWA+FS ++R E
Sbjct: 132 VKVIRNKNNGLSEGYGFVEFESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLE 191
Query: 205 AC-SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENE 263
DLSIFVGDL+PDV+D++L ETFS KYPSVK AKV++D+NTGR+KGYGFVRFGDENE
Sbjct: 192 NNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENE 251
Query: 264 RSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDG 323
R++AMTEMNGV CSSR MRI ATP+K +GYQQQ GG NG ++ +G
Sbjct: 252 RTKAMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ---------GGYMPNGTL---TRPEG 299
Query: 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANR 373
+ N TIFVG LDS V+DEDL++PF++FGEI+SVKIPVGKGCGFVQF NR
Sbjct: 300 DIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGKGCGFVQFVNR 349
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 84/183 (45%), Gaps = 25/183 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+I++GDL + + LH FS V KV+ + TG+S+GYGFV F K +
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 176 SYSGSLMPNTDQPFRLNWATF--------------SGSDRRTEA-CSDLSIFVGDLAPDV 220
+G + + + R+ AT +G+ R E + +IFVG L V
Sbjct: 258 EMNG--VKCSSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
TD L++ F+ ++ + K+ + KG GFV+F + A+ ++NG +
Sbjct: 316 TDEDLKQPFN-EFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKLNGTVIGKQT 368
Query: 281 MRI 283
+R+
Sbjct: 369 VRL 371
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 350 bits (897), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/287 (60%), Positives = 216/287 (75%), Gaps = 15/287 (5%)
Query: 90 QQQQQQHGLSNGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFS--HTGQVVNVKV 147
Q H + + + N N E KTIW+GDL +WMDE +L++ F+ ++V++KV
Sbjct: 77 HQYPNHHHFHHQSRGNKHQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKV 136
Query: 148 IRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEAC- 206
IRNK G SEGYGFVEF S A+KVLQ ++G+ MPNTDQPFRLNWA+FS ++R E
Sbjct: 137 IRNKHNGSSEGYGFVEFESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNG 196
Query: 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266
DLSIFVGDLAPDV+D++L ETFS KYPSVK AKV++D+NTGR+KGYGFVRFGDENER++
Sbjct: 197 PDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTK 256
Query: 267 AMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESN 326
AMTEMNGV CSSR MRI ATP+K +GYQQQ GG +GA ++S+G++
Sbjct: 257 AMTEMNGVKCSSRAMRIGPATPRKTNGYQQQ---------GGYMPSGAF---TRSEGDTI 304
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANR 373
N TIFVG LDS V+DEDL++PFS+FGEI+SVKIPVGKGCGFVQF NR
Sbjct: 305 NTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGKGCGFVQFVNR 351
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 25/183 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+I++GDL + + LH FS V KV+ + TG+S+GYGFV F K +
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 176 SYSGSLMPNTDQPFRLNWATF--------------SGSDRRTEACS-DLSIFVGDLAPDV 220
+G + + + R+ AT SG+ R+E + + +IFVG L V
Sbjct: 260 EMNG--VKCSSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSV 317
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
TD L++ FS ++ + K+ + KG GFV+F + A+ ++NG +
Sbjct: 318 TDEDLKQPFS-EFGEIVSVKIPVG------KGCGFVQFVNRPNAEEALEKLNGTVIGKQT 370
Query: 281 MRI 283
+R+
Sbjct: 371 VRL 373
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 319 bits (817), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 153/265 (57%), Positives = 199/265 (75%), Gaps = 3/265 (1%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T +E +T+WIGDL +W+DE +L +CFS TG++V+VKVIRNK TGQ EGYGF+EF S AAA
Sbjct: 19 TLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAA 78
Query: 171 EKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS 230
E+ LQ+Y+G+ MP T+ FRLNWA+F GS ++ +A D SIFVGDLAPDVTD +LQETF
Sbjct: 79 ERTLQTYNGTQMPGTELTFRLNWASF-GSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFR 137
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
Y SV+GAKV+ D +TGR+KGYGFV+F +E+ER+RAM EMNG+YCS+RPMRI ATPKK
Sbjct: 138 VHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKK 197
Query: 291 ASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESN--NATIFVGALDSDVSDEDLREPF 348
G QQQY ++A+ P + A VQ + ES+ TI V LD +V++E+L++ F
Sbjct: 198 NVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAF 257
Query: 349 SQFGEILSVKIPVGKGCGFVQFANR 373
SQ GE++ VKIP KG G+VQF R
Sbjct: 258 SQLGEVIYVKIPATKGYGYVQFKTR 282
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
TI + +L + E L FS G+V+ VK+ K GYG+V+F +R +AE+ +Q
Sbjct: 238 TISVANLDQNVTEEELKKAFSQLGEVIYVKIPATK------GYGYVQFKTRPSAEEAVQR 291
Query: 177 YSGSLMPNTDQPFRLNWATFSGSD 200
G ++ Q R++W+ G D
Sbjct: 292 MQGQVI--GQQAVRISWSKNPGQD 313
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 312 bits (800), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 155/265 (58%), Positives = 194/265 (73%), Gaps = 17/265 (6%)
Query: 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAA 170
T DE +T+WIGDL +WMDE FL+ CF+HTG++V+ KVIRNKQTGQ EGYGF+EF S AAA
Sbjct: 57 TADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAA 116
Query: 171 EKVLQSYSGSLMPN-TDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
E+VLQ+++ + +P+ DQ FRLNWA+ S D+R ++ D +IFVGDLA DVTD IL ETF
Sbjct: 117 ERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAADVTDYILLETF 175
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ YPSVKGAKV+ID TGRTKGYGFVRF DE+E+ RAMTEMNGV CS+RPMRI A K
Sbjct: 176 RASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASK 235
Query: 290 K-ASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPF 348
K +G + Y S A G +D + NN T+FVG LD+ V+D+ L+ F
Sbjct: 236 KGVTGQRDSYQSSA--------------AGVTTDNDPNNTTVFVGGLDASVTDDHLKNVF 281
Query: 349 SQFGEILSVKIPVGKGCGFVQFANR 373
SQ+GEI+ VKIP GK CGFVQF+ +
Sbjct: 282 SQYGEIVHVKIPAGKRCGFVQFSEK 306
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 83/182 (45%), Gaps = 24/182 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
TI++GDL + + L F + V KV+ ++ TG+++GYGFV F + + +
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 176 SYSGSLMPNTDQPFRLNWA-----------TFSGSDRRTEACSD---LSIFVGDLAPDVT 221
+G +P + +P R+ A ++ S +D ++FVG L VT
Sbjct: 216 EMNG--VPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
D L+ FS +Y + K+ K GFV+F +++ A+ +NGV +
Sbjct: 274 DDHLKNVFS-QYGEIVHVKIPAG------KRCGFVQFSEKSCAEEALRMLNGVQLGGTTV 326
Query: 282 RI 283
R+
Sbjct: 327 RL 328
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 309 bits (792), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 153/285 (53%), Positives = 197/285 (69%), Gaps = 14/285 (4%)
Query: 89 KQQQQQQHGLSNGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVI 148
+Q QQQ+G + +E +++WIGDL +WMDE +L CF HTG++V+ KVI
Sbjct: 57 QQPSQQQYGAMATTNPNPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVI 116
Query: 149 RNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSD 208
RNKQTGQSEGYGF+EF S AAAE +LQ+Y+G+LMPN +Q FR+NWA+ +RR ++ ++
Sbjct: 117 RNKQTGQSEGYGFLEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLGAGERRDDS-AE 175
Query: 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268
+IFVGDLA DVTD ILQETF S Y SV+GAKV+ D TGR+KGYGFV+F DE+E+ RAM
Sbjct: 176 HTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAM 235
Query: 269 TEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNA 328
TEMNGV CS+RPMRI A KK G Q+ + Q Q +Q + + NN
Sbjct: 236 TEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQ-------------NPQATQGESDPNNT 282
Query: 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANR 373
TIFVG LD V++E LR+ FS +GE++ VKI GK CGFVQF R
Sbjct: 283 TIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCGFVQFGTR 327
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 24/182 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCF-SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
TI++GDL + + L F S V KV+ ++ TG+S+GYGFV+F + + +
Sbjct: 177 TIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMT 236
Query: 176 SYSGSLMPNTDQPFRLNWATFS---GSDRR--------TEACSD---LSIFVGDLAPDVT 221
+G L + +P R+ A G+ ++ T+ SD +IFVG L P V
Sbjct: 237 EMNGVLC--STRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLDPTVA 294
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
+ L++ FS Y + K++ K GFV+FG +A++ +NG + +
Sbjct: 295 EEHLRQVFS-PYGELVHVKIVAG------KRCGFVQFGTRASAEQALSSLNGTQLGGQSI 347
Query: 282 RI 283
R+
Sbjct: 348 RL 349
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 293 bits (751), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 147/282 (52%), Positives = 193/282 (68%), Gaps = 20/282 (7%)
Query: 93 QQQHGLSNGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQ 152
Q Q+G+ GS N + + K++WIGDL WMDE ++ + F+ +G+ + KVIRNK
Sbjct: 43 QHQYGI------GSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKL 96
Query: 153 TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEA-CSDLSI 211
TGQSEGYGF+EF S + AE+VLQ+Y+G+ MP+T+Q FRLNWA ++R + D +I
Sbjct: 97 TGQSEGYGFIEFVSHSVAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTI 156
Query: 212 FVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271
FVGDLAP+VTD +L +TF + Y SVKGAKV++D TGR+KGYGFVRF DENE+ RAMTEM
Sbjct: 157 FVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEM 216
Query: 272 NGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIF 331
NG YCS+RPMRI A K A Q + G+N D + NN TIF
Sbjct: 217 NGQYCSTRPMRIGPAANKNA------LPMQPAMYQNTQGANAG-------DNDPNNTTIF 263
Query: 332 VGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANR 373
VG LD++V+D++L+ F QFGE+L VKIP GK CGFVQ+AN+
Sbjct: 264 VGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANK 305
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 25/192 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
TI++GDL + + L + F + G V KV+ ++ TG+S+GYGFV F + +
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 176 SYSGSLMPNTDQPFRLN--------------WATFSGSDRRTEACSDLSIFVGDLAPDVT 221
+G + +P R+ + G++ ++ +IFVG L +VT
Sbjct: 215 EMNGQYC--STRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDANVT 272
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
D L+ F ++ + K+ K GFV++ ++ A++ +NG + +
Sbjct: 273 DDELKSIFG-QFGELLHVKIPPG------KRCGFVQYANKASAEHALSVLNGTQLGGQSI 325
Query: 282 RIDVA-TPKKAS 292
R+ +P K S
Sbjct: 326 RLSWGRSPNKQS 337
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 287 bits (734), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 141/263 (53%), Positives = 177/263 (67%), Gaps = 14/263 (5%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKV 173
E +++WIGDL WMDE +L N F TG+ KVIRNKQ G SEGYGF+EF + A AE+
Sbjct: 78 EIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERN 137
Query: 174 LQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
LQ+Y+G+ MP+++Q FRLNWA +RR + ++FVGDLAPDVTD +L ETF + Y
Sbjct: 138 LQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVY 197
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293
SVKGAKV+ D TGR+KGYGFVRF DE+E+ RAMTEMNG YCSSRPMR A KK
Sbjct: 198 SSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLT 257
Query: 294 YQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGE 353
Q P S QG+ + + N TIFVGA+D V+++DL+ F QFGE
Sbjct: 258 MQ-------------PASY-QNTQGNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGE 303
Query: 354 ILSVKIPVGKGCGFVQFANRLVS 376
++ VKIP GK CGFVQ+ANR +
Sbjct: 304 LVHVKIPAGKRCGFVQYANRACA 326
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
T+++GDL + + L F V KV+ ++ TG+S+GYGFV F + + +
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 176 SYSGSLMPN---------TDQPFRLNWATFSGSDRRTEAC--SDLSIFVGDLAPDVTDSI 224
+G + +P + A++ + + ++ +IFVG + VT+
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQSVTEDD 293
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283
L+ F G V + G K GFV++ + +A++ +NG + +R+
Sbjct: 294 LKSVFGQF-----GELVHVKIPAG--KRCGFVQYANRACAEQALSVLNGTQLGGQSIRL 345
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 206 bits (524), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/281 (40%), Positives = 166/281 (59%), Gaps = 10/281 (3%)
Query: 99 SNGKQNGSNNNFTNDET----KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG 154
S +N SN + DE T+W+G+L W+ E F+ ++ G+ V VK+IRN+ TG
Sbjct: 72 SGNSENTSNYGSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTG 131
Query: 155 QSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSG-SDRRTEACSDLSIFV 213
+ GY FVEF S A + S + +P T+ F+LNWA+ G ++ S+ SIFV
Sbjct: 132 MNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFV 190
Query: 214 GDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273
GDL+P+V + + F+S+Y S K AK++ D T ++GYGFVRF DEN++ A+ EM G
Sbjct: 191 GDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQG 250
Query: 274 VYCSSRPMRIDVATPKKASGYQQQYSSQALV-LAGGPGSNGARVQGSQSDGESNNATIFV 332
C RP+R+ +ATPK + +S +V ++ P + Q ++ N+T+FV
Sbjct: 251 QICGDRPIRVGLATPKSKA---HVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFV 307
Query: 333 GALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANR 373
G L VS+E+L+ F FGEI+ VKIP GKGCGFVQF NR
Sbjct: 308 GGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNR 348
>sp|O13759|CSX1_SCHPO RNA-binding post-transcriptional regulator csx1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=csx1 PE=1 SV=1
Length = 632
Score = 204 bits (520), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 112/263 (42%), Positives = 152/263 (57%), Gaps = 8/263 (3%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSE--GYGFVEFYSRAAAEK 172
+ T+W+GDL WMD TF+ ++ + VNVKV+R+K + Y FV+F S AAAE+
Sbjct: 84 SDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAER 143
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSD--LSIFVGDLAPDVTDSILQETFS 230
L Y+ +++P F+LNWAT G D SIFVGDL P DS L TF
Sbjct: 144 ALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFR 203
Query: 231 SKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290
S YPS AK+I+D TG ++ YGFVRF E E+ A+ M G C RP+RI VA+PK
Sbjct: 204 SIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKS 263
Query: 291 ASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQ 350
+ + AL + SN Q S + N T+FVG L S++S++DL+ F
Sbjct: 264 RASIA---ADSALGIVPTSTSNRQPNQDLCS-MDPLNTTVFVGGLASNLSEKDLQVCFQP 319
Query: 351 FGEILSVKIPVGKGCGFVQFANR 373
FG IL++KIP GKGCGFVQ++ +
Sbjct: 320 FGRILNIKIPFGKGCGFVQYSEK 342
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 113/265 (42%), Gaps = 59/265 (22%)
Query: 47 AMMQYPAAAMAMMQQQQMMMYPHHYMPYGGGGHPYYQ----NGGGVKQQQQQQHGLSNGK 102
+Q+ ++A A ++ +M Y + +P G H ++ GGG+ QH
Sbjct: 131 CFVQFSSSAAA---ERALMKYNNTMIP---GAHCTFKLNWATGGGI------QH------ 172
Query: 103 QNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCF-SHTGQVVNVKVIRNKQTGQSEGYGF 161
NN + D +I++GDL +++ L F S + K+I + TG S YGF
Sbjct: 173 ----NNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGF 228
Query: 162 VEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT-----------------FSGSDRRT- 203
V F S + L G L +P R++ A+ S S+R+
Sbjct: 229 VRFSSEKEQQHALMHMQGYLC--QGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPN 286
Query: 204 -EACS----DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRF 258
+ CS + ++FVG LA ++++ LQ F + I++ KG GFV++
Sbjct: 287 QDLCSMDPLNTTVFVGGLASNLSEKDLQVCF-------QPFGRILNIKIPFGKGCGFVQY 339
Query: 259 GDENERSRAMTEMNGVYCSSRPMRI 283
+++ +A+ M G + +R+
Sbjct: 340 SEKSAAEKAINTMQGALVGTSHIRL 364
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
T+++G L + E L CF G+++N+K+ K G GFV++ ++AAEK + +
Sbjct: 298 TVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK------GCGFVQYSEKSAAEKAINT 351
Query: 177 YSGSLMPNTDQPFRLNW 193
G+L+ + RL W
Sbjct: 352 MQGALVGTSH--IRLAW 366
>sp|Q9NX07|TSAP1_HUMAN tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens
GN=TRNAU1AP PE=1 SV=1
Length = 287
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 118/187 (63%), Gaps = 8/187 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKAS 292
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V S+P+R+ VA PK +
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179
Query: 293 GYQQQYS 299
+YS
Sbjct: 180 VKPVEYS 186
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 32/171 (18%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+++GDL P + ++ + F++ +V K+I + TG GY FV F D + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329
++NG +P + ATP K ++ Y++ G Q D S +
Sbjct: 64 KING-----KP--LPGATPAKR--FKLNYATY----------------GKQPDN-SPEYS 97
Query: 330 IFVGALDSDVSDEDLREPFSQF------GEILSVKIPVGKGCGFVQFANRL 374
+FVG L DV D L E F + G+++ + V KG GFV+F + L
Sbjct: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDEL 148
>sp|Q1RMJ7|TSAP1_BOVIN tRNA selenocysteine 1-associated protein 1 OS=Bos taurus
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 118/187 (63%), Gaps = 8/187 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKAS 292
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G + S+P+R+ VA PK +
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAIPKASR 179
Query: 293 GYQQQYS 299
+YS
Sbjct: 180 VKPVEYS 186
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 32/171 (18%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+++GDL P + ++ + F++ +V K+I + TG GY FV F D + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329
++NG +P+ ATP K ++ Y++ G Q D S +
Sbjct: 64 KING-----KPL--PGATPAKR--FKLNYATY----------------GKQPDN-SPEYS 97
Query: 330 IFVGALDSDVSDEDLREPFSQF------GEILSVKIPVGKGCGFVQFANRL 374
+FVG L DV D L E F + G+++ + V KG GFV+F + L
Sbjct: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDEL 148
>sp|Q9QZI7|TSAP1_RAT tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus
GN=Trnau1ap PE=1 SV=1
Length = 287
Score = 152 bits (383), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 8/187 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKAS 292
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V +P+R+ VA PK +
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASR 179
Query: 293 GYQQQYS 299
+YS
Sbjct: 180 VKPVEYS 186
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 79/171 (46%), Gaps = 32/171 (18%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+++GDL P + ++ + F++ +V K+I + TG GY FV F D + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329
++NG +P+ ATP K ++ Y++ G Q D S +
Sbjct: 64 KING-----KPL--PGATPAKR--FKLNYATY----------------GKQPDN-SPEYS 97
Query: 330 IFVGALDSDVSDEDLREPFSQF------GEILSVKIPVGKGCGFVQFANRL 374
+FVG L DV D L E F + G+++ + V KG GFV+F + L
Sbjct: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDEL 148
>sp|Q5R462|TSAP1_PONAB tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii
GN=TRNAU1AP PE=2 SV=1
Length = 287
Score = 152 bits (383), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 8/187 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+ T+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKAS 292
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V S+P+R+ VA PK +
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 179
Query: 293 GYQQQYS 299
+YS
Sbjct: 180 VKPVEYS 186
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 32/171 (18%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+++GDL P + ++ + F++ +V K+I + TG GY FV F D + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329
++NG +P+ ATP K ++ Y + G Q D S +
Sbjct: 64 KING-----KPL--PGATPAKR--FKLNYVTY----------------GKQPDN-SPEYS 97
Query: 330 IFVGALDSDVSDEDLREPFSQF------GEILSVKIPVGKGCGFVQFANRL 374
+FVG L DV D L E F + G+++ + V KG GFV+F + L
Sbjct: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDEL 148
>sp|Q80VC6|TSAP1_MOUSE tRNA selenocysteine 1-associated protein 1 OS=Mus musculus
GN=Trnau1ap PE=1 SV=2
Length = 287
Score = 152 bits (383), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 117/187 (62%), Gaps = 8/187 (4%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ F+ G+ V++VK+IRN+ TG GY FVEF A AEK L
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 176 SYSGSLMPNTD--QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G +P + F+LN+AT+ ++ + + S+FVGDL PDV D +L E F Y
Sbjct: 64 KINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRIDVATPKKAS 292
PS +G KV++D TG +KGYGFV+F DE E+ RA+TE G V +P+R+ VA PK +
Sbjct: 121 PSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKASR 179
Query: 293 GYQQQYS 299
+YS
Sbjct: 180 VKPVEYS 186
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 32/171 (18%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+++GDL P + ++ + F++ +V K+I + TG GY FV F D + +
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329
++NG +P+ ATP K ++ Y++ G Q D S +
Sbjct: 64 KING-----KPL--PGATPAKR--FKLNYATY----------------GKQPDN-SPEYS 97
Query: 330 IFVGALDSDVSDEDLREPFSQF------GEILSVKIPVGKGCGFVQFANRL 374
+FVG L DV D L E F + G+++ V KG GFV+F + L
Sbjct: 98 LFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDPTGVSKGYGFVKFTDEL 148
>sp|Q00539|NAM8_YEAST Protein NAM8 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NAM8 PE=1 SV=2
Length = 523
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 161/310 (51%), Gaps = 59/310 (19%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQ----------SEGYGFVEFYS 166
+++GDL D+ + ++ G+ +NV+++ N ++GY FV+F S
Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPS 115
Query: 167 RAAAEKVLQSYSGSLMPN-TDQPFRLNWATFSGSDRR-----TEACSDLSIFVGDLAPDV 220
A L +G L+PN ++ +LNWAT S S+ ++ ++ SIFVGDLAP+V
Sbjct: 116 STHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNV 174
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
T+S L E F ++Y S AK++ D TG +KGYGFV+F + +E+ A++EM GV+ + R
Sbjct: 175 TESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRA 234
Query: 281 MRIDVATPKKASGYQQQY--------SSQAL--------VLAGGPG--SNGARVQGSQSD 322
+++ SG QQ SS +L L+ G SNG G + +
Sbjct: 235 IKVG-----PTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRN 289
Query: 323 GES------------------NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKG 364
S NN T+F+G L S V++++LR F FG I+ VKIPVGK
Sbjct: 290 HMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKC 349
Query: 365 CGFVQFANRL 374
CGFVQ+ +RL
Sbjct: 350 CGFVQYVDRL 359
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 102 KQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGF 161
+Q S N+FT+ T++IG L + E L F G +V VK+ K GF
Sbjct: 299 QQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCC------GF 352
Query: 162 VEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193
V++ R +AE + G P + RL+W
Sbjct: 353 VQYVDRLSAEAAIAGMQG--FPIANSRVRLSW 382
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 117 TIWIGDLFHWMDETFLHNCF-SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+I++GDL + E+ L F + + K++ ++ TG S+GYGFV+F + + L
Sbjct: 164 SIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALS 223
Query: 176 SYSGSLM 182
G +
Sbjct: 224 EMQGVFL 230
>sp|Q4KM14|TSP1L_DANRE tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio
GN=trnau1apl PE=2 SV=1
Length = 316
Score = 139 bits (350), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 113/185 (61%), Gaps = 10/185 (5%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVV-NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+GDL +MDE F+ FS G+ VK+I ++ TG S GY FVE A+ ++ +Q
Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQ 66
Query: 176 SYSGSLMPNTDQP--FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G L+P ++ P F+LN+AT+ +R E + S+FVGDL +V D L + F K+
Sbjct: 67 RLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKF 123
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPMRIDVATPK--K 290
PS KGAKV+ D G ++GYGFV+F DENE+ +A+ E N +P+RI +A K K
Sbjct: 124 PSCKGAKVVTDP-YGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIAVNKGNK 182
Query: 291 ASGYQ 295
AS Y
Sbjct: 183 ASTYH 187
>sp|P32831|NGR1_YEAST Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NGR1 PE=1 SV=2
Length = 672
Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 105/374 (28%), Positives = 154/374 (41%), Gaps = 116/374 (31%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR-------------------------N 150
+T+W+GDL DE + +S + V VK+IR N
Sbjct: 34 RTLWMGDLDPSFDEATIEEIWSKLDKKVIVKLIRAKKNLLIPCSSTSSSNNNTSEENAEN 93
Query: 151 KQTGQSE----------------------------GYGFVEFYSRAAAEKVLQSYSGSLM 182
+Q+ + GY FVEF ++ A+ L S + + +
Sbjct: 94 QQSASNSTDQLDNSQMININGISFIDPSTTQLHHAGYCFVEFETQKDAKFAL-SLNATPL 152
Query: 183 PNTDQP-------------FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229
PN P FRLNWA+ + + + S+FVGDL+P T++ L F
Sbjct: 153 PNFYSPTTNSQTNPTFKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLF 212
Query: 230 SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+++ SVK +V+ D TG ++ +GFVRFGDE+ER RA+ EM+G + R +R+ ATP+
Sbjct: 213 QTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPR 272
Query: 290 -----------------------------------KASGYQQQYSSQAL---VLAGGP-- 309
K + Q +S L L P
Sbjct: 273 NNMMLQLQEQQQQQQQLQQQHQQLDQEDNNGPLLIKTANNLIQNNSNMLPLNALHNAPPM 332
Query: 310 -----GSNGARVQGSQSDGESN----NATIFVGALDSDVSDEDLREPFSQFGEILSVKIP 360
G + RV S N N T+FVG L ++ LR F FG IL+V+IP
Sbjct: 333 HLNEGGISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIP 392
Query: 361 VGKGCGFVQFANRL 374
GK CGFV+F R+
Sbjct: 393 NGKNCGFVKFEKRI 406
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 138/271 (50%), Gaps = 25/271 (9%)
Query: 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAE 171
++ KT+++G+L + E + FS G N K+I + T ++ Y FVEF+ A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 172 KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL----------SIFVGDLAPDVT 221
L + +G + + ++NWAT S ++ + S + +FVGDL+P++T
Sbjct: 61 AALAAMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEIT 118
Query: 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281
++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +
Sbjct: 119 TEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 177
Query: 282 RIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSD 341
R + AT +K + Y S L+ S NN T++ G + S +++
Sbjct: 178 RTNWAT-RKPPAPKSTYESNTKQLS---------YDEVVSQSSPNNCTVYCGGVTSGLTE 227
Query: 342 EDLREPFSQFGEILSVKIPVGKGCGFVQFAN 372
+ +R+ FS FG+I+ +++ KG FV+F++
Sbjct: 228 QLMRQTFSPFGQIMEIRVFPDKGYSFVRFSS 258
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 178 SGSLMPNTDQPFRLNWATF------SGSDRRTEACS-----------DLSIFVGDLAPDV 220
G + + R NWAT S + T+ S + +++ G + +
Sbjct: 168 GGQWL--GGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGL 225
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274
T+ ++++TF S + + +V D KGY FVRF + A+ +NG
Sbjct: 226 TEQLMRQTF-SPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSVNGT 272
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 135/257 (52%), Gaps = 18/257 (7%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
+T+++G+L + E + FS G + K+I + ++ Y FVEFY A L
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALA 66
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+ +G + + ++NWAT + S ++ + + +FVGDL+P++T ++ F+ +
Sbjct: 67 AMNGRKILGKE--VKVNWAT-TPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAP-FGK 122
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK-ASGY 294
+ A+V+ D TG++KGYGFV F ++ + A+ M G + R +R + AT K A
Sbjct: 123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKS 182
Query: 295 QQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEI 354
Q+ +++ L R + + N T++ G + S ++D+ +R+ FS FG+I
Sbjct: 183 TQENNTKQL-----------RFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQI 231
Query: 355 LSVKIPVGKGCGFVQFA 371
+ +++ KG FV+F+
Sbjct: 232 MEIRVFPEKGYSFVRFS 248
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 178 SGSLMPNTDQPFRLNWATF------SGSDRRTEAC-----------SDLSIFVGDLAPDV 220
G + + R NWAT S + T+ + +++ G +A +
Sbjct: 159 GGQWL--GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 216
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274
TD ++++TFS + + +V + KGY FVRF + A+ +NG
Sbjct: 217 TDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGT 263
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 37/171 (21%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
+++VG+L+ DVT+ ++ + FS P K K+I + + Y FV F + + + A+
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGP-CKSCKMITEHTSNDP--YCFVEFYEHRDAAAALA 66
Query: 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329
MNG + ++++ AT SQ SN+
Sbjct: 67 AMNGRKILGKEVKVNWAT----------------------------TPSSQKKDTSNHFH 98
Query: 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANRL 374
+FVG L +++ ED++ F+ FG+I ++ KG GFV F N+L
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKL 149
>sp|Q503H1|TSAP1_DANRE tRNA selenocysteine 1-associated protein 1 OS=Danio rerio
GN=trnau1ap PE=2 SV=1
Length = 314
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 101/175 (57%), Gaps = 5/175 (2%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
++W+G+L +MDE F+ F+ G+ VV +++IR+K TG++ GYGFVE A E+ L+
Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G +P P R + S ++ E+ S S+FV DL PDV D +L E F + S
Sbjct: 63 KVNGKPLPGATPPKRFKLSR-SNYGKQGES-STFSLFVSDLTPDVDDGMLYEFFHYHFSS 120
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CSSRPMRIDVATPK 289
K+++D+N G +K GFV F E E+ RA+ ++ G + +R+ +A+ +
Sbjct: 121 CCSGKIVLDAN-GHSKCCGFVSFESEREQKRALVDLQGATGLGKKALRLSLASSR 174
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 33/167 (19%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269
S+++G+L P + + + F+ +V ++I D TG+ GYGFV D+ R +
Sbjct: 3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLR 62
Query: 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329
++NG +P+ PK+ + Y Q GES+ +
Sbjct: 63 KVNG-----KPLP-GATPPKRFKLSRSNYGKQ---------------------GESSTFS 95
Query: 330 IFVGALDSDVSDEDLREPFS-QFGEILSVKIPV-----GKGCGFVQF 370
+FV L DV D L E F F S KI + K CGFV F
Sbjct: 96 LFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDANGHSKCCGFVSF 142
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 136/265 (51%), Gaps = 25/265 (9%)
Query: 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175
KT+++G+L + E + FS G N K+I + T ++ Y FVEF+ A L
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALA 64
Query: 176 SYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL----------SIFVGDLAPDVTDSIL 225
+ +G + + ++NWAT S ++ + S + +FVGDL+P++T +
Sbjct: 65 AMNGRKIMGKE--VKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDI 122
Query: 226 QETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285
+ F+ + + A+V+ D TG++KGYGFV F ++ + A+ +M G + R +R +
Sbjct: 123 KAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLR 345
AT +K + Y S L+ N Q S S N T++ G + S ++++ +R
Sbjct: 182 AT-RKPPAPKSTYESNTKQLSYDEVVN----QSSPS-----NCTVYCGGVTSGLTEQLMR 231
Query: 346 EPFSQFGEILSVKIPVGKGCGFVQF 370
+ FS FG+I+ +++ KG FV+F
Sbjct: 232 QTFSPFGQIMEIRVFPDKGYSFVRF 256
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 94/208 (45%), Gaps = 36/208 (17%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + F+ G++ + +V+++ TG+S+GYGFV F+++ AE +Q
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRT-----------------EACSDLSIFVGDLAPDV 220
G + + R NWAT ++ + S+ +++ G + +
Sbjct: 168 GGQWL--GGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGL 225
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG------- 273
T+ ++++TFS + + +V D KGY FVRF + A+ +NG
Sbjct: 226 TEQLMRQTFSP-FGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGHV 278
Query: 274 VYCSSRPMRIDVATP---KKASGYQQQY 298
V C +D+ P + GY Q Y
Sbjct: 279 VKCYWGKETLDMINPVQQQNQIGYPQPY 306
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 108/203 (53%), Gaps = 6/203 (2%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A+ + A +IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GYQQQYSSQALVLAGGPGSNGAR 315
G + +++ L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 102 KQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYG 160
K + N N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY
Sbjct: 88 KASAHNKNL--DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYA 145
Query: 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
F+ F S A++ +++ +G + N +P +++A
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCN--RPITVSYA 177
Score = 35.4 bits (80), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK------GCGFVQF 370
+AT++VG LD VS+ L E F Q G +++ +P + G GFV+F
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 137/274 (50%), Gaps = 31/274 (11%)
Query: 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK---------------QTGQSEG 158
+ +T+++G+L + E + FS G + K+I + Q ++
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 159 YGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
Y FVEFY A L + +G + + ++NWAT + S ++ + + +FVGDL+P
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKE--VKVNWAT-TPSSQKKDTSNHFHVFVGDLSP 123
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
++T ++ F+ + + A+V+ D TG++KGYGFV F ++ + A+ M G +
Sbjct: 124 EITTEDIKSAFAP-FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG 182
Query: 279 RPMRIDVATPKK-ASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDS 337
R +R + AT K A Q+ +++ L R + + N T++ G + S
Sbjct: 183 RQIRTNWATRKPPAPKSTQETNTKQL-----------RFEDVVNQSSPKNCTVYCGGIAS 231
Query: 338 DVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFA 371
++D+ +R+ FS FG+I+ +++ KG FV+F+
Sbjct: 232 GLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFS 265
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 84/174 (48%), Gaps = 26/174 (14%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++GDL + + + F+ G++ + +V+++ TG+S+GYGFV FY++ AE +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 178 SGSLMPNTDQPFRLNWATF------SGSDRRTEAC-----------SDLSIFVGDLAPDV 220
G + + R NWAT S + T+ + +++ G +A +
Sbjct: 176 GGQWL--GGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGL 233
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274
TD ++++TFS + + +V + KGY FVRF + A+ +NG
Sbjct: 234 TDQLMRQTFSP-FGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGT 280
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 50/186 (26%)
Query: 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGR---------------TKGYG 254
+++VG+L+ DVT+ ++ + FS P K K+I + R Y
Sbjct: 10 TLYVGNLSRDVTEVLILQLFSQIGP-CKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYC 68
Query: 255 FVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGA 314
FV F + + + A+ MNG + ++++ AT
Sbjct: 69 FVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT--------------------------- 101
Query: 315 RVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFV 368
SQ SN+ +FVG L +++ ED++ F+ FG+I ++ KG GFV
Sbjct: 102 -TPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFV 160
Query: 369 QFANRL 374
F N+L
Sbjct: 161 SFYNKL 166
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 108/203 (53%), Gaps = 6/203 (2%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A+ + A +IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GYQQQYSSQALVLAGGPGSNGAR 315
G + +++ L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 102 KQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYG 160
K + N N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY
Sbjct: 88 KASAHNKNL--DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYA 145
Query: 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
F+ F S A++ +++ +G + N +P +++A
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCN--RPITVSYA 177
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK------GCGFVQF 370
+AT++VG LD VS+ L E F Q G +++ +P + G GFV+F
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 108/203 (53%), Gaps = 6/203 (2%)
Query: 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEK 172
++ T+++G L + E L F G VVN + +++ TGQ +GYGFVEF S A+
Sbjct: 10 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADY 69
Query: 173 VLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSK 232
++ + ++ +P R+N A+ + A +IF+G+L P++ + +L +TFS+
Sbjct: 70 AIKIMN--MIKLYGKPIRVNKASAHNKNLDVGA----NIFIGNLDPEIDEKLLYDTFSAF 123
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292
++ K++ D +TG +KGY F+ F + A+ MNG Y +RP+ + A K +
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 183
Query: 293 GYQQQYSSQALVLAGGPGSNGAR 315
G + +++ L+ A P S R
Sbjct: 184 GERHGSAAERLLAAQNPLSQADR 206
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 102 KQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYG 160
K + N N D I+IG+L +DE L++ FS G ++ K++R+ TG S+GY
Sbjct: 88 KASAHNKNL--DVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYA 145
Query: 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194
F+ F S A++ +++ +G + N +P +++A
Sbjct: 146 FINFASFDASDAAIEAMNGQYLCN--RPITVSYA 177
Score = 35.4 bits (80), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK------GCGFVQF 370
+AT++VG LD VS+ L E F Q G +++ +P + G GFV+F
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/261 (26%), Positives = 129/261 (49%), Gaps = 36/261 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++G+L + E L++ FS G + +++V R+ T S GY +V + A +K +Q
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ + + +P R+ W+ + R+ + +IF+ +L P + + L ETFS+ + V
Sbjct: 111 LNYAEI--NGRPCRIMWSERDPAIRKKGSG---NIFIKNLHPAIDNKALHETFST-FGEV 164
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV +D N G ++G+GFV F +E++ A+ +NG+ + + + + PKK
Sbjct: 165 LSCKVALDEN-GNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKK------ 217
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
R+ + ++N I+V +D + +DE+ + FSQ+GEI+S
Sbjct: 218 -----------------DRI-SKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVS 259
Query: 357 VKIPVG-----KGCGFVQFAN 372
+ KG GFV F +
Sbjct: 260 AALEKDAEGKPKGFGFVNFVD 280
Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 128/262 (48%), Gaps = 27/262 (10%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D LH FS G+V++ KV + + G S G+GFV F + A+ +++
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDLS-IFVGDLAPDVTDSILQETFSSKYPSV 236
+G LM + ++ + EA ++ + I+V ++ + TD ++ FS +Y +
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFS-QYGEI 257
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK--KASGY 294
A + D+ G+ KG+GFV F D N ++A+ E+NG S+ + + A K +A
Sbjct: 258 VSAALEKDAE-GKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEEL 316
Query: 295 QQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEI 354
++QY L A+ QG +F+ LD + DE L+E F+ +G I
Sbjct: 317 KKQYEQYRL-------EKLAKFQG---------VNLFIKNLDDSIDDEKLKEEFAPYGTI 360
Query: 355 LSVKIPV-----GKGCGFVQFA 371
S ++ KG GFV F+
Sbjct: 361 TSARVMRDQEGNSKGFGFVCFS 382
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 33/199 (16%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
NFTN K I + DE F FS G++V+ + ++ + G+ +G+GFV F
Sbjct: 229 NFTNIYVKNIDV----ETTDEEF-EQLFSQYGEIVSAALEKDAE-GKPKGFGFVNFVDHN 282
Query: 169 AAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDL------------------S 210
AA K ++ +G + F+ + ++ E +L +
Sbjct: 283 AAAKAVEELNG-------KEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVN 335
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
+F+ +L + D L+E F+ Y ++ A+V+ D G +KG+GFV F E ++AMTE
Sbjct: 336 LFIKNLDDSIDDEKLKEEFAP-YGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTE 393
Query: 271 MNGVYCSSRPMRIDVATPK 289
N + +P+ + +A K
Sbjct: 394 KNQQIVAGKPLYVAIAQRK 412
Score = 35.0 bits (79), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 324 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI 359
E+NNA+++VG LD ++++ L + FS G I S+++
Sbjct: 46 ENNNASLYVGELDPNITEALLYDVFSPLGPISSIRV 81
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 102 bits (253), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 132/263 (50%), Gaps = 31/263 (11%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D LH+ FS G +V+ KV + +GQS+GYGFV++ + +A+K ++
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKL 184
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK 237
+G L+ N Q + + D +++V +LA TD L+ F +Y +
Sbjct: 185 NGMLL-NDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFG-EYGKIT 242
Query: 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQ 297
A V+ D G++KG+GFV F + ++ +RA+ +NG + + G Q+
Sbjct: 243 SAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYV---------GRAQK 292
Query: 298 YSSQALVLAGGPGSNGARVQGSQSDGESNN----ATIFVGALDSDVSDEDLREPFSQFGE 353
S + L RV+ Q+ E+ + + ++V LD +SDE L+E FS FG
Sbjct: 293 KSERETEL---------RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGT 343
Query: 354 ILSVKI---PVG--KGCGFVQFA 371
+ S K+ P G KG GFV FA
Sbjct: 344 VTSSKVMRDPNGTSKGSGFVAFA 366
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 128/264 (48%), Gaps = 44/264 (16%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + ++ L + F G VV V+V R+ T +S GYG+V F + A + +Q
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ +P +P R+ ++ S RR+ A +IF+ +L + L +TFSS + ++
Sbjct: 97 L--NYIPLYGKPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTFSS-FGNI 150
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV +DS +G++KGYGFV++ +E +A+ ++NG+ + + + +
Sbjct: 151 VSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV------------- 196
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNN---ATIFVGALDSDVSDEDLREPFSQFGE 353
G ++ + D +N ++V L +D+DL+ F ++G+
Sbjct: 197 ----------------GPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGK 240
Query: 354 ILSVKIP-----VGKGCGFVQFAN 372
I S + KG GFV F N
Sbjct: 241 ITSAVVMKDGEGKSKGFGFVNFEN 264
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 102/200 (51%), Gaps = 25/200 (12%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
+ FTN +++ +L + L N F G++ + V+++ + G+S+G+GFV F
Sbjct: 209 ANKTKFTN-----VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNF 262
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEA----------CSDL----S 210
+ A + ++S +G D+ + + A S+R TE +D +
Sbjct: 263 ENADDAARAVESLNGHKF--DDKEWYVGRAQ-KKSERETELRVRYEQNLKEAADKFQSSN 319
Query: 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270
++V +L P ++D L+E FS + +V +KV+ D N G +KG GFV F E + AM++
Sbjct: 320 LYVKNLDPSISDEKLKEIFSP-FGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQ 377
Query: 271 MNGVYCSSRPMRIDVATPKK 290
++G S+P+ + +A K+
Sbjct: 378 LSGKMIESKPLYVAIAQRKE 397
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKI------PVGKGCGFVQFAN 372
N +++VG LD +V+D L + F Q G +++V++ G G+V F N
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTN 86
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 130/261 (49%), Gaps = 36/261 (13%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
+ ++++G+L + E L FS G V +++V R+ T +S GY +V + + A EK L
Sbjct: 59 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 118
Query: 175 QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234
+ + +L+ +P R+ W+ + R+T A +IF+ +L + + L +TF++ +
Sbjct: 119 EELNYTLI--KGRPCRIMWSQRDPALRKTGAG---NIFIKNLDAAIDNKALHDTFAA-FG 172
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGY 294
++ KV D + G +KGYGFV + + S+A+ +NG+ + + + + PKK
Sbjct: 173 NILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDR-- 229
Query: 295 QQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEI 354
Q + ++N ++V ++++V+DE+ RE F++FGE+
Sbjct: 230 ----------------------QSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEV 267
Query: 355 LSVKIP-----VGKGCGFVQF 370
S + +G GFV F
Sbjct: 268 TSSSLARDQEGKSRGFGFVNF 288
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 121/246 (49%), Gaps = 24/246 (9%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D LH+ F+ G +++ KV +++ G S+GYGFV + + AA + ++
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHV 208
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTE----ACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G L+ N + + + DR+++ + +++V ++ +VTD +E F+ K+
Sbjct: 209 NGMLL-NEKKVYVGHH--IPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFA-KF 264
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293
V + + D G+++G+GFV F ++A+ E+NG + + + A K
Sbjct: 265 GEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHERE 323
Query: 294 YQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGE 353
+ + S +A L + QG +++ L DV D+ LR FS++G
Sbjct: 324 EELRKSYEAARL-----EKANKYQG---------VNLYIKNLGDDVDDDKLRAMFSEYGP 369
Query: 354 ILSVKI 359
I S K+
Sbjct: 370 ITSAKV 375
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 58/245 (23%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
NFTN +++ ++ + + + F+ G+V + + R+ Q G+S G+GFV F +
Sbjct: 239 NFTN-----VYVKNINNEVTDEEFRELFAKFGEVTSSSLARD-QEGKSRGFGFVNFTTHE 292
Query: 169 AAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLA 217
AA + + Y G ++ L + + + +++++ +L
Sbjct: 293 AAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLG 352
Query: 218 PDVTDSILQETFSSKYPSVKGAKVIIDS-------------------------------- 245
DV D L+ FS +Y + AKV+ DS
Sbjct: 353 DDVDDDKLRAMFS-EYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEK 411
Query: 246 --------NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQ 297
G++KG+GFV F + ++ ++A+TEMN +P+ + +A K Q +
Sbjct: 412 KTEKKGDRKLGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLE 471
Query: 298 YSSQA 302
S QA
Sbjct: 472 ASIQA 476
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 129/259 (49%), Gaps = 37/259 (14%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D N +KGYGFV F + RA+ +MNG+ + R + + ++
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--------GRFKS 175
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A + GAR + E N +++ D+ DE L+E F +FG LS
Sbjct: 176 RKEREAEL--------GARAK------EFTN--VYIKNFGEDMDDERLKELFGKFGPALS 219
Query: 357 VKIPV-----GKGCGFVQF 370
VK+ KG GFV F
Sbjct: 220 VKVMTDESGKSKGFGFVSF 238
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 128/261 (49%), Gaps = 25/261 (9%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ ++ S+GYGFV F ++ AAE+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L+E F P+
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295
+ KV+ D +G++KG+GFV F + +A+ EMNG + + +I V +K Q
Sbjct: 218 L-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK--QIYVGRAQKKVERQ 273
Query: 296 QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355
+ + + R QG ++V LD + DE LR+ FS FG I
Sbjct: 274 TELKRKFEQMKQ---DRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 356 SVKIPV----GKGCGFVQFAN 372
S K+ + KG GFV F++
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSS 342
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L F G ++VKV+ + ++G+S+G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERH 241
Query: 168 AAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + Q Y G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 129/259 (49%), Gaps = 37/259 (14%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D N +KGYGFV F + RA+ +MNG+ + R + + ++
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--------GRFKS 175
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A + GAR + E N +++ D+ DE L+E F +FG LS
Sbjct: 176 RKEREAEL--------GARAK------EFTN--VYIKNFGEDMDDERLKELFGKFGPALS 219
Query: 357 VKIPV-----GKGCGFVQF 370
VK+ KG GFV F
Sbjct: 220 VKVMTDESGKSKGFGFVSF 238
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 128/261 (49%), Gaps = 25/261 (9%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ ++ S+GYGFV F ++ AAE+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L+E F P+
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295
+ KV+ D +G++KG+GFV F + +A+ EMNG + + +I V +K Q
Sbjct: 218 L-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK--QIYVGRAQKKVERQ 273
Query: 296 QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355
+ + + R QG ++V LD + DE LR+ FS FG I
Sbjct: 274 TELKRKFEQMKQ---DRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 356 SVKIPV----GKGCGFVQFAN 372
S K+ + KG GFV F++
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSS 342
Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L F G ++VKV+ + ++G+S+G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERH 241
Query: 168 AAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + Q Y G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 130/259 (50%), Gaps = 37/259 (14%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGRPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D N +KGYGFV F + RA+ +MNG+ + R + + ++
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV--------GRFKS 175
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A + GAR + E N +++ D++DE L+E F ++G LS
Sbjct: 176 RKEREAEL--------GARAK------EFTN--VYIKNFGDDMNDERLKEMFGKYGPALS 219
Query: 357 VKIPV-----GKGCGFVQF 370
VK+ KG GFV F
Sbjct: 220 VKVMTDDNGKSKGFGFVSF 238
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 124/261 (47%), Gaps = 25/261 (9%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ ++ S+GYGFV F ++ AAE+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L+E F KY
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFG-KYGP 216
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295
KV+ D N G++KG+GFV F + +A+ EMNG + + M + A K +
Sbjct: 217 ALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTE 275
Query: 296 QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355
+ + + R QG ++V LD + DE LR+ F FG I
Sbjct: 276 LKRKFEQM-----KQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFLPFGTIT 321
Query: 356 SVKIPV----GKGCGFVQFAN 372
S K+ + KG GFV F++
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSS 342
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 93/192 (48%), Gaps = 20/192 (10%)
Query: 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
FTN ++I + M++ L F G ++VKV+ + G+S+G+GFV F
Sbjct: 190 FTN-----VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHED 243
Query: 170 AEKVLQSYSGSLM-----------PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
A+K + +G M ++ L R ++++V +L
Sbjct: 244 AQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDD 303
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
+ D L++ F + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG ++
Sbjct: 304 GIDDERLRKEFLP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 360
Query: 279 RPMRIDVATPKK 290
+P+ + +A K+
Sbjct: 361 KPLYVALAQRKE 372
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/259 (28%), Positives = 129/259 (49%), Gaps = 37/259 (14%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G V++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ ++F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPIRIMWSQRDPSLRKSGVG---NVFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D N +KGY FV F + +A+ +MNG+ + R ++ V K +
Sbjct: 126 LSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDR--KVFVGRFKSRKEREA 181
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ ++A E N +++ +V DE L+E FSQFG+ LS
Sbjct: 182 ELGAKA--------------------KEFTN--VYIKNFGEEVDDESLKELFSQFGKTLS 219
Query: 357 VKI---PVG--KGCGFVQF 370
VK+ P G KG GFV +
Sbjct: 220 VKVMRDPNGKSKGFGFVSY 238
Score = 91.7 bits (226), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 129/261 (49%), Gaps = 25/261 (9%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D L++ FS G +++ KV+ ++ S+GY FV F ++ AA+K ++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ +A ++++ + +V D L+E FS ++
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFS-QFGK 216
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295
KV+ D N G++KG+GFV + + ++A+ EMNG S + + + A Q
Sbjct: 217 TLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRA--------Q 267
Query: 296 QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355
++ QA + R+ Q +++ LD + DE LR+ FS FG I
Sbjct: 268 KKVERQAELKRKFEQLKQERISRYQ------GVNLYIKNLDDTIDDEKLRKEFSPFGSIT 321
Query: 356 SVKIPV----GKGCGFVQFAN 372
S K+ + KG GFV F++
Sbjct: 322 SAKVMLEDGRSKGFGFVCFSS 342
Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + +D+ L FS G+ ++VKV+R+ G+S+G+GFV +
Sbjct: 188 KEFTN-----VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKGFGFVSYEKH 241
Query: 168 AAAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A K ++ + G ++ L R +++++ +L
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDTIDDEKLRKEFSP-FGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
S+P+ + +A K+
Sbjct: 359 GSKPLYVALAQRKE 372
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKI 359
A+++VG L SDV++ L E FS G +LS+++
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRV 42
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 37/259 (14%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D N +KGYGFV F + RA+ +MNG+ + R + + ++
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--------GRFKS 175
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A + GAR + E N +++ D+ DE L++ F +FG LS
Sbjct: 176 RKEREAEL--------GARAK------EFTN--VYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 357 VKIPV-----GKGCGFVQF 370
VK+ KG GFV F
Sbjct: 220 VKVMTDESGKSKGFGFVSF 238
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 128/261 (49%), Gaps = 25/261 (9%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ ++ S+GYGFV F ++ AAE+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L++ F P+
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295
+ KV+ D +G++KG+GFV F + +A+ EMNG + + +I V +K Q
Sbjct: 218 L-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK--QIYVGRAQKKVERQ 273
Query: 296 QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355
+ + + R QG ++V LD + DE LR+ FS FG I
Sbjct: 274 TELKRKFEQMKQ---DRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 356 SVKIPV----GKGCGFVQFAN 372
S K+ + KG GFV F++
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSS 342
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERH 241
Query: 168 AAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + Q Y G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 99.0 bits (245), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 37/259 (14%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D N +KGYGFV F + RA+ +MNG+ + R + + ++
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--------GRFKS 175
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A + GAR + E N +++ D+ DE L++ F +FG LS
Sbjct: 176 RKEREAEL--------GARAK------EFTN--VYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 357 VKIPV-----GKGCGFVQF 370
VK+ KG GFV F
Sbjct: 220 VKVMTDESGKSKGFGFVSF 238
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 128/261 (49%), Gaps = 25/261 (9%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ ++ S+GYGFV F ++ AAE+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L++ F P+
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295
+ KV+ D +G++KG+GFV F + +A+ EMNG + + +I V +K Q
Sbjct: 218 L-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK--QIYVGRAQKKVERQ 273
Query: 296 QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355
+ + + R QG ++V LD + DE LR+ FS FG I
Sbjct: 274 TELKRKFEQMKQ---DRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 356 SVKIPV----GKGCGFVQFAN 372
S K+ + KG GFV F++
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSS 342
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERH 241
Query: 168 AAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + Q Y G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 129/259 (49%), Gaps = 37/259 (14%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D N +KGYGFV F + RA+ +MNG+ + R + + ++
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFV--------GRFKS 175
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A + GAR + E N +++ D+ DE L+E F Q+G LS
Sbjct: 176 RKEREAEL--------GARAK------EFTN--VYIKNFGEDMDDERLKEWFGQYGAALS 219
Query: 357 VKIPV-----GKGCGFVQF 370
VK+ +G GFV F
Sbjct: 220 VKVMTDDHGKSRGFGFVSF 238
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/261 (26%), Positives = 126/261 (48%), Gaps = 25/261 (9%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ ++ S+GYGFV F ++ AAE+ +
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L+E F +Y +
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFG-QYGA 216
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295
KV+ D + G+++G+GFV F + +A+ +MNG + + + + A K +
Sbjct: 217 ALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTE 275
Query: 296 QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355
+ + + R QG ++V LD + DE LR+ F+ FG I
Sbjct: 276 LKRKFEQM-----KQDRITRYQG---------VNLYVKNLDDGIDDERLRKEFTPFGSIT 321
Query: 356 SVKIPV----GKGCGFVQFAN 372
S K+ + KG GFV F++
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSS 342
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L F G ++VKV+ + G+S G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERH 241
Query: 168 AAAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + + G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ F+ + S+ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFTP-FGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/259 (27%), Positives = 128/259 (49%), Gaps = 37/259 (14%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL E L+ FS G +++++V R+ T +S GY +V F A AE+ L +
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ S R++ +IF+ +L + + L +TFS+ + ++
Sbjct: 72 MNFDVI--KGKPVRIMWSQRDPSLRKSGVG---NIFIKNLDKSIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D N +KGYGFV F + RA+ +MNG+ + R + + ++
Sbjct: 126 LSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFV--------GRFKS 175
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A + GAR + E N +++ D+ DE L++ F +FG LS
Sbjct: 176 RKEREAEL--------GARAK------EFTN--VYIKNFGEDMDDERLKDLFGKFGPALS 219
Query: 357 VKIPV-----GKGCGFVQF 370
VK+ KG GFV F
Sbjct: 220 VKVMTDESGKSKGFGFVSF 238
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 128/261 (49%), Gaps = 25/261 (9%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ KV+ ++ S+GYGFV F ++ AAE+ ++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKM 158
Query: 178 SGSLMPNTDQPF--RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + F R ++ A ++++ + D+ D L++ F P+
Sbjct: 159 NGMLL-NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ 295
+ KV+ D +G++KG+GFV F + +A+ EMNG + + +I V +K Q
Sbjct: 218 L-SVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGK--QIYVGRAQKKVERQ 273
Query: 296 QQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355
+ + + R QG ++V LD + DE LR+ FS FG I
Sbjct: 274 TELKRKFEQMKQ---DRITRYQG---------VNLYVKNLDDGIDDERLRKEFSPFGTIT 321
Query: 356 SVKIPV----GKGCGFVQFAN 372
S K+ + KG GFV F++
Sbjct: 322 SAKVMMEGGRSKGFGFVCFSS 342
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 97/194 (50%), Gaps = 20/194 (10%)
Query: 108 NNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR 167
FTN ++I + MD+ L + F G ++VKV+ + ++G+S+G+GFV F
Sbjct: 188 KEFTN-----VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERH 241
Query: 168 AAAEKVL-----------QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDL 216
A+K + Q Y G ++ L R ++++V +L
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 301
Query: 217 APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276
+ D L++ FS + ++ AKV+++ GR+KG+GFV F E ++A+TEMNG
Sbjct: 302 DDGIDDERLRKEFSP-FGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Query: 277 SSRPMRIDVATPKK 290
+++P+ + +A K+
Sbjct: 359 ATKPLYVALAQRKE 372
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 131/271 (48%), Gaps = 36/271 (13%)
Query: 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY 165
S NN + ++++G+L + E L+ FS GQV +++V R+ T +S GY +V +
Sbjct: 41 SPNNNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYN 100
Query: 166 SRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSIL 225
+ A E+ L+ + +L+ +P R+ W+ + R+T ++F+ +L + + L
Sbjct: 101 NTADGERALEDLNYTLI--KGKPCRIMWSQRDPALRKT---GQGNVFIKNLDSAIDNKAL 155
Query: 226 QETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285
+TF++ + ++ KV D G +KGYGFV + + A+ +NG+ + + + +
Sbjct: 156 HDTFAA-FGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGH 213
Query: 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLR 345
KK Q + ++N I++ +D DV++E+ R
Sbjct: 214 HISKKDR------------------------QSKFDEMKANFTNIYIKNIDPDVTEEEFR 249
Query: 346 EPFSQFGEILSVKI---PVGK--GCGFVQFA 371
+ F QFGEI S + P GK G GFV ++
Sbjct: 250 KIFEQFGEITSATLSRDPEGKSRGFGFVNYS 280
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 121/248 (48%), Gaps = 28/248 (11%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D LH+ F+ G +++ KV ++ + G S+GYGFV + + AA ++
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 199
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTE----ACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G L+ N + F + S DR+++ + +I++ ++ PDVT+ ++ F ++
Sbjct: 200 NGMLL-NDKKVFVGHH--ISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFE-QF 255
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK--KA 291
+ A + D G+++G+GFV + A+ EM+ ++ + + A K +
Sbjct: 256 GEITSATLSRDPE-GKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHERE 314
Query: 292 SGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQF 351
++QY + L A ++ QG ++V L DV DE LRE F +
Sbjct: 315 EELRKQYEAARLEKA-------SKYQG---------VNLYVKNLTDDVDDEKLRELFGPY 358
Query: 352 GEILSVKI 359
G I S K+
Sbjct: 359 GTITSAKV 366
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 70/257 (27%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
NFTN I+I ++ + E F G++ + + R+ + G+S G+GFV + +
Sbjct: 230 NFTN-----IYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRGFGFVNYSTHE 283
Query: 169 AAE-----------KVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLA 217
+A+ K + Y G ++ L + + ++++V +L
Sbjct: 284 SAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLT 343
Query: 218 PDVTDSILQETFSSKYPSVKGAKVIIDSN------------------------------- 246
DV D L+E F Y ++ AKV+ DS
Sbjct: 344 DDVDDEKLRELFGP-YGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAE 402
Query: 247 ---------------------TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285
G++KG+GFV F +E S+A+TEMN + +P+ + +
Sbjct: 403 EKPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVAL 462
Query: 286 ATPKKASGYQQQYSSQA 302
A K Q + S QA
Sbjct: 463 AQRKDVRRSQLEASIQA 479
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 128/261 (49%), Gaps = 37/261 (14%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL + E L+ FS G +++++V R+ T +S GY ++ F A AE+ L +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ R++ ++F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFEVI--KGRPIRIMWSQRDPGLRKSGVG---NVFIKNLDESIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D + R GYGFV F + +RA+ MNG+ + R ++ V K +
Sbjct: 126 LSCKVVCDEHGSR--GYGFVHFETQEAANRAIQTMNGMLLNDR--KVFVGHFKSRREREL 181
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+Y GA+V E N +++ D+ D+ LRE FS FG LS
Sbjct: 182 EY--------------GAKVM------EFTN--VYIKNFGEDMDDKRLREIFSAFGNTLS 219
Query: 357 VKIPV-----GKGCGFVQFAN 372
VK+ + +G GFV + N
Sbjct: 220 VKVMMDDTGRSRGFGFVNYGN 240
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 100/214 (46%), Gaps = 22/214 (10%)
Query: 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
FTN ++I + MD+ L FS G ++VKV+ + TG+S G+GFV + +
Sbjct: 190 FTN-----VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEE 243
Query: 170 AEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
A+K + Y G ++ L R ++++V +L
Sbjct: 244 AQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDD 303
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
+ D L++ FS Y ++ AKV+ + G +KG+GFV F E ++A+TEMNG S+
Sbjct: 304 GIDDDRLRKEFSP-YGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 279 RPMRIDVATPK--KASGYQQQYSSQALVLAGGPG 310
+P+ + +A K + + QY + + PG
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMPG 394
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 136/277 (49%), Gaps = 37/277 (13%)
Query: 102 KQNGSNN-NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYG 160
KQ G+N N + + ++++GDL + E L++ FS G V +++V R+ T S GY
Sbjct: 20 KQEGTNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYA 79
Query: 161 FVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDV 220
+V F AA+ ++ + P + R+ W+ S R+ A +IF+ +L PD+
Sbjct: 80 YVNFNDHDAAKTAIEKL--NFTPIKGKLCRIMWSQRDPSLRKKGAG---NIFIKNLHPDI 134
Query: 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280
+ L +TFS + ++ +KV D TG++KG+G+V F ++ S A+ +NG+ + +
Sbjct: 135 DNKALYDTFSV-FGNILSSKVATDE-TGKSKGFGYVHFEEDESASEAIDALNGMLLNGQE 192
Query: 281 MRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVS 340
+ + GP + + + ++N +++ ++++ +
Sbjct: 193 IYV------------------------GPHLSKKERESKFEEMKANFTNVYIKNINTETT 228
Query: 341 DEDLREPFSQFGEILSV---KIPVG--KGCGFVQFAN 372
D++ E ++FG+ SV + P G KG GFV F N
Sbjct: 229 DKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVN 265
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 25/195 (12%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
NFTN ++I ++ + + G+ +V V+ G+++G+GFV F +
Sbjct: 214 NFTN-----VYIKNINTETTDKEFEELVAKFGKTDSV-VLERTPEGENKGFGFVNFVNHE 267
Query: 169 AAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSD--------------LSIFVG 214
A K ++ + + QP +N A +R+ E +++F+
Sbjct: 268 DAVKCVEELNNTEF--KGQPLYVNRAQ-KKYERQQELKKQYEATRMEKMAKYQGINLFIK 324
Query: 215 DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274
+L + D L+E F+ Y ++ AKV+ N G++KG+GFV F E ++A+TE N
Sbjct: 325 NLDDSIDDKKLEEEFAP-YGTITSAKVMTTEN-GKSKGFGFVCFSTPEEATKAITEKNQQ 382
Query: 275 YCSSRPMRIDVATPK 289
+ +P+ + +A K
Sbjct: 383 IVAGKPLYVAIAQRK 397
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 95.9 bits (237), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 135/263 (51%), Gaps = 29/263 (11%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D L++ FS G +++ KV+ ++ S GYGFV F ++ AA + +Q+
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAANRAIQTM 158
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDL----SIFVGDLAPDVTDSILQETFSSKY 233
+G L+ N + F ++ S +R E + + ++++ + D+ D L+E FS+ +
Sbjct: 159 NGMLL-NDRKVFVGHFK--SRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSA-F 214
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293
+ KV++D N+GR++G+GFV +G+ E +A+TEMNG + R + + A
Sbjct: 215 GNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRA------- 266
Query: 294 YQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGE 353
Q++ Q + R+ Q ++V LD + D+ LR+ FS +G
Sbjct: 267 -QKRIERQGELKRKFEQIKQERINRYQG------VNLYVKNLDDGIDDDRLRKEFSPYGT 319
Query: 354 ILSVKIPV----GKGCGFVQFAN 372
I S K+ KG GFV F++
Sbjct: 320 ITSTKVMTEGGHSKGFGFVCFSS 342
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 126/261 (48%), Gaps = 37/261 (14%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
+++IGDL + E L+ FS G +++++V R+ T +S GY ++ F A AE+ L +
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ R++ ++F+ +L + + L +TFS+ + +
Sbjct: 72 MNFEVI--KGRPIRIMWSQRDPGLRKSGVG---NVFIKNLDDSIDNKALYDTFSA-FGDI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D R GYGFV F + +RA+ MNG+ + R ++ V K +
Sbjct: 126 LSCKVVCDEYGSR--GYGFVHFETQEAANRAIQTMNGMLLNDR--KVFVGHFKSRREREL 181
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+Y GA+V E N +++ D+ D+ L+E FS FG LS
Sbjct: 182 EY--------------GAKVM------EFTN--VYIKNFGEDMDDKRLKEIFSAFGNTLS 219
Query: 357 VKIPV-----GKGCGFVQFAN 372
VK+ + +G GFV + N
Sbjct: 220 VKVMMDNSGRSRGFGFVNYGN 240
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 22/214 (10%)
Query: 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
FTN ++I + MD+ L FS G ++VKV+ + +G+S G+GFV + +
Sbjct: 190 FTN-----VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEE 243
Query: 170 AEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
A+K + Y G ++ L R ++++V +L
Sbjct: 244 AQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDD 303
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
+ D L++ FS Y ++ KV+ + G +KG+GFV F E ++A+TEMNG S+
Sbjct: 304 GIDDDRLRKEFSP-YGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 279 RPMRIDVATPK--KASGYQQQYSSQALVLAGGPG 310
+P+ + +A K + + QY + + PG
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMPG 394
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/268 (24%), Positives = 128/268 (47%), Gaps = 36/268 (13%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
N + + ++++G+L + E L+ FS GQV +++V R+ T +S GY +V + + A
Sbjct: 42 NASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTA 101
Query: 169 AAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQET 228
E+ L+ + +L+ +P R+ W+ + R+T ++F+ +L + + L +T
Sbjct: 102 DGERALEDLNYTLI--KGKPCRIMWSQRDPALRKT---GQGNVFIKNLDSAIDNKALHDT 156
Query: 229 FSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288
F++ + ++ KV D G +KGYGFV + + A+ +NG+ + + + +
Sbjct: 157 FAA-FGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS 214
Query: 289 KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPF 348
KK Q + ++N +++ +D DV++E+ RE F
Sbjct: 215 KKDR------------------------QSKFEEMKANFTNVYIKNIDQDVTEEEFRELF 250
Query: 349 SQFGEILSVKIP-----VGKGCGFVQFA 371
+FGEI S + +G GFV F+
Sbjct: 251 EKFGEITSATLSRDQEGKSRGFGFVNFS 278
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 65/248 (26%), Positives = 120/248 (48%), Gaps = 28/248 (11%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L +D LH+ F+ G +++ KV ++ + G S+GYGFV + + AA ++
Sbjct: 139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTE----ACSDLSIFVGDLAPDVTDSILQETFSSKY 233
+G L+ N + F + S DR+++ + ++++ ++ DVT+ +E F K+
Sbjct: 198 NGMLL-NDKKVFVGHH--ISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFE-KF 253
Query: 234 PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK--KA 291
+ A + D G+++G+GFV F A+ EMN ++ + + A K +
Sbjct: 254 GEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHERE 312
Query: 292 SGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQF 351
++QY + L A ++ QG ++V L DV DE LRE F +
Sbjct: 313 EELRKQYEAARLEKA-------SKYQG---------VNLYVKNLTDDVDDEKLRELFGPY 356
Query: 352 GEILSVKI 359
G I S K+
Sbjct: 357 GTITSAKV 364
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 248 GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQA 302
G++KG+GFV F +E S+A+TEMN + +P+ + +A K Q + S QA
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQA 484
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 126/261 (48%), Gaps = 36/261 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++G+L + E L F+ G V +++V R+ T +S GY +V F++ EK L
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ +L+ +P R+ W+ S R+ ++F+ +L P + + L +TFS+ + +
Sbjct: 141 LNYTLI--KGRPCRIMWSQRDPSLRKMGTG---NVFIKNLDPAIDNKALHDTFSA-FGKI 194
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV +D G KGYGFV F + A+ +NG+ + + + + S ++
Sbjct: 195 LSCKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVG----HHVSRRER 249
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
Q +AL ++N +++ LD+++++++ + F QFGEI S
Sbjct: 250 QSKVEAL--------------------KANFTNVYIKNLDTEITEQEFSDLFGQFGEITS 289
Query: 357 VKIPVG-----KGCGFVQFAN 372
+ + +G GFV +AN
Sbjct: 290 LSLVKDQNDKPRGFGFVNYAN 310
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 65/276 (23%), Positives = 125/276 (45%), Gaps = 34/276 (12%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
T ++I +L +D LH+ FS G++++ KV + + G ++GYGFV F S +A +
Sbjct: 167 TGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAI 225
Query: 175 QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSD--LSIFVGDLAPDVTDSILQETFSSK 232
+ +G L+ N + + + + + EA ++++ +L ++T+ + F +
Sbjct: 226 EHVNGMLL-NDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFG-Q 283
Query: 233 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK--K 290
+ + ++ D N + +G+GFV + + +A+ E+N + + + A K +
Sbjct: 284 FGEITSLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHER 342
Query: 291 ASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQ 350
+++Y L + QG +F+ L +V DE L+ FS
Sbjct: 343 EEELRKRYEQMKL-------EKMNKYQG---------VNLFIKNLQDEVDDERLKAEFSA 386
Query: 351 FGEILSVKIPV-----GKGCGFVQF-----ANRLVS 376
FG I S KI KG GFV + AN+ V+
Sbjct: 387 FGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVT 422
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 96/205 (46%), Gaps = 19/205 (9%)
Query: 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168
NFTN ++I +L + E + F G++ ++ ++++ Q + G+GFV + +
Sbjct: 259 NFTN-----VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHE 312
Query: 169 AAEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLA 217
A+K + Y G ++ L + +++F+ +L
Sbjct: 313 CAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQ 372
Query: 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277
+V D L+ FS+ + ++ AK++ D G++KG+GFV + E ++A+TEMN +
Sbjct: 373 DEVDDERLKAEFSA-FGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLA 430
Query: 278 SRPMRIDVATPKKASGYQQQYSSQA 302
+P+ + +A K+ Q + QA
Sbjct: 431 GKPLYVALAQRKEVRRSQLEAQIQA 455
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 126/261 (48%), Gaps = 37/261 (14%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
+++IGDL + E L+ FS G +++++V R+ T +S Y ++ F A AE+ L +
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ ++ +P R+ W+ R++ + +F+ +L + + L +TFS+ + ++
Sbjct: 72 MNFEVI--KGRPIRIMWSQRDPGLRKSGVGN---VFIKNLDESIDNKALYDTFSA-FGNI 125
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV+ D + R GYGFV F +RA+ MNG+ + R ++ V K +
Sbjct: 126 LSCKVVCDEHGSR--GYGFVHFETHEAANRAIQTMNGMLLNDR--KVFVGHFKSRREREL 181
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+Y GA+V E N +++ D+ D+ LRE FS FG LS
Sbjct: 182 EY--------------GAKVM------EFTN--VYIKNFGEDMDDKRLREIFSAFGNTLS 219
Query: 357 VKIPV-----GKGCGFVQFAN 372
VK+ + +G GFV + N
Sbjct: 220 VKVMMDDSGRSRGFGFVNYGN 240
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 22/214 (10%)
Query: 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
FTN ++I + MD+ L FS G ++VKV+ + +G+S G+GFV + +
Sbjct: 190 FTN-----VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEE 243
Query: 170 AEKVLQS-----------YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAP 218
A+K + Y G ++ L R ++++V +L
Sbjct: 244 AQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDD 303
Query: 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278
+ D L++ F Y ++ AKV+ + G +KG+GFV F E ++A+TEMNG S+
Sbjct: 304 GIDDDRLRKEFLP-YGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 279 RPMRIDVATPK--KASGYQQQYSSQALVLAGGPG 310
+P+ + +A K + + QY + + PG
Sbjct: 361 KPLYVALAQRKEERKAILTNQYMQRLATMRAMPG 394
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/271 (24%), Positives = 129/271 (47%), Gaps = 36/271 (13%)
Query: 105 GSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEF 164
GS + + + ++++GDL + E L++ FS G V +++V R+ T S GY +V F
Sbjct: 27 GSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNF 86
Query: 165 YSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
A K ++ + + P + R+ W+ S R+ + +IF+ +L PD+ +
Sbjct: 87 NDHEAGRKAIEQLNYT--PIKGRLCRIMWSQRDPSLRKKGSG---NIFIKNLHPDIDNKA 141
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
L +TFS + + +K+ D N G++KG+GFV F +E A+ +NG+ + + + +
Sbjct: 142 LYDTFSV-FGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVA 199
Query: 285 VATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDL 344
+K Q + + +++ ++V ++S+ +DE
Sbjct: 200 PHLSRKERDSQLE------------------------ETKAHYTNLYVKNINSETTDEQF 235
Query: 345 REPFSQFGEILSVKIPVG-----KGCGFVQF 370
+E F++FG I+S + KG GFV +
Sbjct: 236 QELFAKFGPIVSASLEKDADGKLKGFGFVNY 266
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 124/263 (47%), Gaps = 29/263 (11%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
I+I +L +D L++ FS G +++ K+ + + G+S+G+GFV F AA++ + +
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSD--LSIFVGDLAPDVTDSILQETFSSKYPS 235
+G L+ N + + + D + E +++V ++ + TD QE F+ K+
Sbjct: 187 NGMLL-NGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFA-KFGP 244
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGY- 294
+ A + D++ G+ KG+GFV + + +A+ +N + + + A K +
Sbjct: 245 IVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHV 303
Query: 295 -QQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGE 353
++QY + L A+ QG +FV LD V DE L E F+ +G
Sbjct: 304 LKKQYEAYRL-------EKMAKYQG---------VNLFVKNLDDSVDDEKLEEEFAPYGT 347
Query: 354 ILSVKIP-----VGKGCGFVQFA 371
I S K+ KG GFV F+
Sbjct: 348 ITSAKVMRTENGKSKGFGFVCFS 370
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 46/184 (25%)
Query: 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV 256
+GS+ ++ S S++VGDL P V+++ L + FS SV +V D+ T + GY +V
Sbjct: 26 TGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSP-IGSVSSIRVCRDAITKTSLGYAYV 84
Query: 257 RFGDENERSRAMTEMNGVYCSSRPMRI-----DVATPKKASGYQQQYSSQALVLAGGPGS 311
F D +A+ ++N R RI D + KK SG
Sbjct: 85 NFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSG------------------ 126
Query: 312 NGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV-----GKGCG 366
IF+ L D+ ++ L + FS FG+ILS KI KG G
Sbjct: 127 -----------------NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFG 169
Query: 367 FVQF 370
FV F
Sbjct: 170 FVHF 173
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 87/174 (50%), Gaps = 17/174 (9%)
Query: 128 DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187
DE F F+ G +V+ + ++ G+ +G+GFV + A K +++ + S + N ++
Sbjct: 232 DEQF-QELFAKFGPIVSASLEKDAD-GKLKGFGFVNYEKHEDAVKAVEALNDSEL-NGEK 288
Query: 188 PF---------RLNWATFSGSDRRTEACSD---LSIFVGDLAPDVTDSILQETFSSKYPS 235
+ R++ R E + +++FV +L V D L+E F+ Y +
Sbjct: 289 LYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAP-YGT 347
Query: 236 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289
+ AKV+ N G++KG+GFV F E ++A+TE N + +P+ + +A K
Sbjct: 348 ITSAKVMRTEN-GKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRK 400
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 124/261 (47%), Gaps = 40/261 (15%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++G+L + E L FS GQV +++V R+ T +S GY +V + S EK L+
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ +++ +P R+ W+ + R+T ++F+ +L + + L +TF++ + ++
Sbjct: 109 LNYTVIKG--KPCRIMWSQRDPALRKT---GQGNVFIKNLDHAIDNKALHDTFAA-FGNI 162
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA--SGY 294
KV D G +KGYGFV + + A+ +NG+ + + + + PKK S +
Sbjct: 163 LSCKVAQDE-LGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF 221
Query: 295 QQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEI 354
++ ++N I+V +D DV+DED RE F + G+I
Sbjct: 222 EEM--------------------------KANFTNIYVKNIDLDVTDEDFRELFEKHGDI 255
Query: 355 LSVKIP-----VGKGCGFVQF 370
S I +G GFV +
Sbjct: 256 TSASIARDDQGKSRGFGFVNY 276
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 60/245 (24%), Positives = 117/245 (47%), Gaps = 22/245 (8%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
++I +L H +D LH+ F+ G +++ KV ++ + G S+GYGFV + + AA ++
Sbjct: 138 VFIKNLDHAIDNKALHDTFAAFGNILSCKVAQD-ELGNSKGYGFVHYETAEAANNAIKHV 196
Query: 178 SGSLMPNTDQPFRLNWATFSGSDRRTEACSDLS-IFVGDLAPDVTDSILQETFSSKYPSV 236
+G L+ + + E ++ + I+V ++ DVTD +E F K+ +
Sbjct: 197 NGMLLNEKKVFVGHHIPKKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFE-KHGDI 255
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK--KASGY 294
A + D + G+++G+GFV + + A+ +N + + + + A K +
Sbjct: 256 TSASIARD-DQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEEL 314
Query: 295 QQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEI 354
++QY + L ++ QG +++ L+ DV DE LR+ F+ FG I
Sbjct: 315 RKQYEAARL-------EKQSKYQG---------VNLYIKNLNDDVDDEKLRDMFTPFGTI 358
Query: 355 LSVKI 359
S K+
Sbjct: 359 TSAKV 363
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 226 QETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285
++T + ++KG K I+ G++KG+GFV F + +E ++A+TEMN +P+ + +
Sbjct: 404 EDTKAGDKVTIKGEKKIL----GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVAL 459
Query: 286 ATPKKASGYQQQYSSQA 302
A K Q + + QA
Sbjct: 460 AQRKDVRKNQLEATIQA 476
Score = 32.7 bits (73), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKI 359
N+A+++VG LD V++ L E FS G++ S+++
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRV 79
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 126/259 (48%), Gaps = 36/259 (13%)
Query: 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176
++++GDL ++E+ L + FS G V++++V R+ T +S GY +V F A AE+ L +
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 177 YSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ L+ N +P R+ W+ S RR+ ++F+ +L + + + +TFS+ + ++
Sbjct: 63 MNFDLVRN--KPIRIMWSQRDPSLRRSGVG---NVFIKNLDRAIDNKAIYDTFSA-FGNI 116
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQ 296
KV D G +KGYGFV F E + ++ ++NG+ + + + + P+K ++
Sbjct: 117 LSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKER--EK 173
Query: 297 QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356
+ +A + ++V D DE L+E F +G+I S
Sbjct: 174 ELGEKAKLFTN----------------------VYVKNFTEDFDDEKLKEFFEPYGKITS 211
Query: 357 VKIPV-----GKGCGFVQF 370
K+ KG GFV F
Sbjct: 212 YKVMSKEDGKSKGFGFVAF 230
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 98/193 (50%), Gaps = 20/193 (10%)
Query: 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAA 169
FTN +++ + D+ L F G++ + KV+ +K+ G+S+G+GFV F + A
Sbjct: 182 FTN-----VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEA 235
Query: 170 AEKVLQSYSGSLM------------PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLA 217
AE +Q+ +G M ++ L +R E+ ++++V +L
Sbjct: 236 AEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLD 295
Query: 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277
+ D L+ FS Y ++ AKV+ D GR+KG+GFV F +E + A+TE+NG
Sbjct: 296 DTIDDDRLRIAFSP-YGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVG 353
Query: 278 SRPMRIDVATPKK 290
S+P+ + +A K+
Sbjct: 354 SKPLYVALAQRKE 366
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 127/263 (48%), Gaps = 40/263 (15%)
Query: 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174
T ++++GDL + E L++ F+ + +V++ ++ +G+S YG+ F SR A +
Sbjct: 23 TASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAI 82
Query: 175 QSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234
+ + SL+ + R+ W+ + RR ++FV +L VT+++LQ+ F K+
Sbjct: 83 EKKNNSLL--NGKMIRVMWSVRAPDARRNGVG---NVFVKNLPESVTNAVLQDMF-KKFG 136
Query: 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGY 294
++ KV + G+++GYGFV+F E+ A+ +N + + + +
Sbjct: 137 NIVSCKVATLED-GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV----------- 184
Query: 295 QQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEI 354
G RV+ E +++ LD+DVS++ LRE F++FG+I
Sbjct: 185 ------------GKFMKKTDRVK-----PEEKYTNLYMKNLDADVSEDLLREKFAEFGKI 227
Query: 355 LSVKIP-----VGKGCGFVQFAN 372
+S+ I + +G FV F N
Sbjct: 228 VSLAIAKDENRLCRGYAFVNFDN 250
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 123/266 (46%), Gaps = 39/266 (14%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177
+++ +L + L + F G +V+ KV + G+S GYGFV+F AA +Q+
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 178 SGSLMPNTDQPFRLNWATF-SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV 236
+ +++ + + + F +DR ++++ +L DV++ +L+E F+ ++ +
Sbjct: 173 NSTIVADKE----IYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFA-EFGKI 227
Query: 237 KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA----- 291
+ D N +GY FV F + + RA +NG S+ + + A K
Sbjct: 228 VSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLL 286
Query: 292 -SGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQ 350
+++++ Q ++ A+V + I+V ++ V++E+LR+ FSQ
Sbjct: 287 REQFKEKHEEQKMI---------AKV-----------SNIYVKNVNVAVTEEELRKHFSQ 326
Query: 351 FGEILSVKIPV-----GKGCGFVQFA 371
G I S K+ KG GFV F+
Sbjct: 327 CGTITSTKLMCDEKGKSKGFGFVCFS 352
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 86/193 (44%), Gaps = 18/193 (9%)
Query: 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY----SRAAAEKV 173
+++ +L + E L F+ G++V++ + ++ + GY FV F +R AAE V
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 174 LQSYSGSLM---------PNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSI 224
+ GS +Q R + + S+ I+V ++ VT+
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSN--IYVKNVNVAVTEEE 319
Query: 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284
L++ FS + ++ K++ D G++KG+GFV F E A+ +G +P+ +
Sbjct: 320 LRKHFS-QCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVA 377
Query: 285 VATPKKASGYQQQ 297
+A K+ Q Q
Sbjct: 378 IAQKKEDRKMQLQ 390
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,278,442
Number of Sequences: 539616
Number of extensions: 6746670
Number of successful extensions: 36518
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 352
Number of HSP's that attempted gapping in prelim test: 31356
Number of HSP's gapped (non-prelim): 4115
length of query: 376
length of database: 191,569,459
effective HSP length: 119
effective length of query: 257
effective length of database: 127,355,155
effective search space: 32730274835
effective search space used: 32730274835
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 62 (28.5 bits)