Query 017133
Match_columns 376
No_of_seqs 294 out of 2914
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:54:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.5E-43 3.2E-48 327.1 26.6 255 114-376 2-324 (352)
2 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-40 3.3E-45 324.2 24.8 226 117-376 2-232 (562)
3 KOG0117 Heterogeneous nuclear 100.0 3.3E-40 7.1E-45 288.0 22.1 229 107-376 75-306 (506)
4 TIGR01648 hnRNP-R-Q heterogene 100.0 2E-39 4.3E-44 305.8 25.7 223 111-376 54-282 (578)
5 KOG0145 RNA-binding protein EL 100.0 5.7E-39 1.2E-43 261.4 21.0 257 111-376 37-333 (360)
6 TIGR01628 PABP-1234 polyadenyl 100.0 1.3E-38 2.9E-43 310.5 25.3 244 114-376 87-339 (562)
7 KOG0148 Apoptosis-promoting RN 100.0 6.2E-39 1.4E-43 262.8 18.2 211 112-376 3-213 (321)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.4E-37 5.1E-42 294.4 26.1 250 114-376 1-326 (481)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.6E-36 7.7E-41 286.3 27.0 253 114-376 95-449 (481)
10 TIGR01622 SF-CC1 splicing fact 100.0 5.7E-36 1.2E-40 285.7 28.0 261 112-376 86-423 (457)
11 KOG0127 Nucleolar protein fibr 100.0 1.3E-36 2.7E-41 271.5 21.8 257 115-375 5-346 (678)
12 TIGR01645 half-pint poly-U bin 100.0 3.1E-35 6.7E-40 277.7 26.7 174 113-289 105-284 (612)
13 KOG0144 RNA-binding protein CU 100.0 4.9E-36 1.1E-40 260.7 18.9 180 110-295 29-212 (510)
14 TIGR01659 sex-lethal sex-letha 100.0 1.6E-34 3.5E-39 260.0 25.1 175 110-292 102-278 (346)
15 TIGR01642 U2AF_lg U2 snRNP aux 100.0 7.4E-34 1.6E-38 274.9 25.4 252 111-376 171-477 (509)
16 KOG0148 Apoptosis-promoting RN 100.0 5.4E-32 1.2E-36 222.1 17.5 171 113-292 60-241 (321)
17 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 7.5E-31 1.6E-35 242.4 22.1 177 114-291 88-351 (352)
18 KOG0123 Polyadenylate-binding 100.0 5.8E-31 1.3E-35 238.1 19.3 215 116-376 2-221 (369)
19 TIGR01648 hnRNP-R-Q heterogene 100.0 2.2E-29 4.9E-34 237.9 20.7 231 113-356 136-370 (578)
20 TIGR01659 sex-lethal sex-letha 100.0 2.8E-29 6.2E-34 226.1 16.0 140 204-376 103-248 (346)
21 KOG0123 Polyadenylate-binding 100.0 1.4E-28 3E-33 222.6 18.0 243 115-376 76-324 (369)
22 KOG0127 Nucleolar protein fibr 100.0 1.6E-28 3.5E-33 219.8 15.2 258 115-376 117-509 (678)
23 KOG0131 Splicing factor 3b, su 100.0 1.4E-27 3E-32 185.2 12.9 175 112-293 6-181 (203)
24 TIGR01645 half-pint poly-U bin 99.9 4.3E-27 9.3E-32 222.6 15.7 148 207-376 106-259 (612)
25 KOG0124 Polypyrimidine tract-b 99.9 6.1E-27 1.3E-31 200.0 15.0 173 113-288 111-289 (544)
26 KOG0145 RNA-binding protein EL 99.9 1.2E-26 2.6E-31 189.6 15.9 175 114-289 126-358 (360)
27 KOG0117 Heterogeneous nuclear 99.9 9.7E-27 2.1E-31 203.9 15.9 175 113-296 162-338 (506)
28 KOG0110 RNA-binding protein (R 99.9 2.8E-26 6E-31 212.1 17.5 232 113-376 383-668 (725)
29 KOG0147 Transcriptional coacti 99.9 1.5E-26 3.2E-31 208.4 10.0 262 111-376 175-503 (549)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.6E-25 1.2E-29 213.1 21.2 174 113-289 293-502 (509)
31 KOG0144 RNA-binding protein CU 99.9 2.5E-26 5.4E-31 200.4 8.8 138 206-375 32-177 (510)
32 TIGR01622 SF-CC1 splicing fact 99.9 2.3E-24 5E-29 205.9 17.1 149 206-376 87-241 (457)
33 KOG0109 RNA-binding protein LA 99.9 5.7E-25 1.2E-29 182.7 9.6 149 116-290 3-151 (346)
34 KOG1190 Polypyrimidine tract-b 99.9 1.9E-22 4E-27 175.2 19.1 254 113-376 148-465 (492)
35 KOG4205 RNA-binding protein mu 99.9 3.1E-23 6.7E-28 181.1 12.0 174 114-292 5-179 (311)
36 KOG4212 RNA-binding protein hn 99.9 8.5E-22 1.8E-26 172.4 20.8 170 111-285 40-290 (608)
37 KOG0146 RNA-binding protein ET 99.9 6.3E-23 1.4E-27 168.5 12.5 178 112-291 16-367 (371)
38 KOG4211 Splicing factor hnRNP- 99.9 6.9E-22 1.5E-26 176.1 18.9 255 112-376 7-334 (510)
39 KOG0109 RNA-binding protein LA 99.9 4.5E-22 9.7E-27 165.6 9.5 123 209-376 3-125 (346)
40 KOG0131 Splicing factor 3b, su 99.9 3.5E-22 7.7E-27 155.2 8.0 139 206-376 7-152 (203)
41 KOG0110 RNA-binding protein (R 99.9 2.1E-21 4.6E-26 180.0 11.9 175 116-291 516-695 (725)
42 KOG0124 Polypyrimidine tract-b 99.8 9.7E-22 2.1E-26 168.3 6.5 145 209-375 114-264 (544)
43 KOG0146 RNA-binding protein ET 99.8 3.5E-20 7.5E-25 152.5 11.9 104 187-297 3-109 (371)
44 KOG1456 Heterogeneous nuclear 99.8 1.1E-18 2.3E-23 150.2 21.3 252 111-374 27-336 (494)
45 KOG1190 Polypyrimidine tract-b 99.8 4.9E-20 1.1E-24 160.2 13.2 251 113-374 26-346 (492)
46 KOG0105 Alternative splicing f 99.8 1E-19 2.3E-24 141.6 12.2 158 207-375 5-162 (241)
47 KOG4205 RNA-binding protein mu 99.8 5.2E-19 1.1E-23 154.7 10.9 141 207-375 5-151 (311)
48 KOG1365 RNA-binding protein Fu 99.8 8.2E-19 1.8E-23 151.4 10.7 259 111-376 56-337 (508)
49 KOG0105 Alternative splicing f 99.8 1E-17 2.2E-22 130.7 14.4 152 113-277 4-176 (241)
50 KOG1456 Heterogeneous nuclear 99.8 8.4E-17 1.8E-21 138.7 21.1 251 115-376 120-460 (494)
51 KOG4206 Spliceosomal protein s 99.8 1.3E-17 2.7E-22 135.4 14.1 165 207-375 8-195 (221)
52 PLN03134 glycine-rich RNA-bind 99.8 6.1E-18 1.3E-22 133.7 11.7 87 204-291 30-116 (144)
53 KOG4206 Spliceosomal protein s 99.8 4.3E-17 9.3E-22 132.4 16.5 163 114-287 8-220 (221)
54 KOG1548 Transcription elongati 99.8 3.9E-17 8.5E-22 139.6 16.4 176 109-292 128-355 (382)
55 KOG0147 Transcriptional coacti 99.7 8.6E-18 1.9E-22 152.1 11.1 166 118-291 281-530 (549)
56 KOG0120 Splicing factor U2AF, 99.7 2.9E-17 6.4E-22 150.7 10.4 249 112-376 172-467 (500)
57 PLN03134 glycine-rich RNA-bind 99.7 1.7E-16 3.6E-21 125.5 11.7 84 112-197 31-114 (144)
58 KOG1457 RNA binding protein (c 99.7 4.2E-16 9.2E-21 125.3 13.6 162 111-277 30-274 (284)
59 KOG0122 Translation initiation 99.7 1.5E-16 3.3E-21 129.8 9.4 84 205-289 186-269 (270)
60 KOG4212 RNA-binding protein hn 99.7 4.8E-16 1E-20 136.7 12.6 168 207-375 43-268 (608)
61 KOG0106 Alternative splicing f 99.7 1.1E-16 2.4E-21 131.5 6.6 152 116-286 2-168 (216)
62 KOG4211 Splicing factor hnRNP- 99.7 2.1E-15 4.6E-20 135.0 13.9 145 206-376 8-158 (510)
63 PF00076 RRM_1: RNA recognitio 99.6 1.3E-15 2.8E-20 105.9 9.4 70 211-282 1-70 (70)
64 KOG0121 Nuclear cap-binding pr 99.6 6.2E-16 1.3E-20 113.4 7.0 82 207-289 35-116 (153)
65 KOG0122 Translation initiation 99.6 3.3E-15 7.1E-20 122.1 10.2 86 110-197 184-269 (270)
66 KOG1457 RNA binding protein (c 99.6 7E-15 1.5E-19 118.4 11.9 169 205-374 31-259 (284)
67 KOG0125 Ataxin 2-binding prote 99.6 2.6E-15 5.7E-20 127.6 9.0 84 204-290 92-175 (376)
68 KOG0129 Predicted RNA-binding 99.6 3E-14 6.5E-19 128.6 15.4 170 112-290 256-444 (520)
69 KOG0149 Predicted RNA-binding 99.6 6.5E-15 1.4E-19 119.9 9.0 83 111-196 8-90 (247)
70 KOG0126 Predicted RNA-binding 99.6 7.5E-16 1.6E-20 120.0 3.2 98 205-303 32-129 (219)
71 KOG0149 Predicted RNA-binding 99.6 4.2E-15 9.1E-20 121.1 7.4 80 207-288 11-90 (247)
72 PF14259 RRM_6: RNA recognitio 99.6 1.6E-14 3.5E-19 100.3 9.0 70 211-282 1-70 (70)
73 KOG0120 Splicing factor U2AF, 99.6 2E-14 4.4E-19 132.1 11.9 178 112-290 286-493 (500)
74 COG0724 RNA-binding proteins ( 99.6 1.3E-13 2.8E-18 123.5 16.9 144 208-361 115-259 (306)
75 KOG0121 Nuclear cap-binding pr 99.6 7.3E-15 1.6E-19 107.8 7.0 82 112-195 33-114 (153)
76 KOG0107 Alternative splicing f 99.6 8.6E-15 1.9E-19 113.6 7.7 79 207-291 9-87 (195)
77 PLN03120 nucleic acid binding 99.5 3.4E-14 7.4E-19 120.0 10.4 77 208-289 4-80 (260)
78 PF00076 RRM_1: RNA recognitio 99.5 2.2E-14 4.7E-19 99.7 7.5 66 118-184 1-66 (70)
79 COG0724 RNA-binding proteins ( 99.5 9.7E-14 2.1E-18 124.3 13.5 153 115-270 115-286 (306)
80 KOG0106 Alternative splicing f 99.5 1.5E-14 3.2E-19 119.0 7.3 143 210-376 3-146 (216)
81 KOG4207 Predicted splicing fac 99.5 1.7E-14 3.7E-19 114.8 7.1 85 204-289 9-93 (256)
82 KOG1365 RNA-binding protein Fu 99.5 6.4E-14 1.4E-18 121.5 11.1 171 113-289 159-362 (508)
83 KOG0114 Predicted RNA-binding 99.5 7.9E-14 1.7E-18 98.4 8.9 83 204-290 14-96 (124)
84 KOG0125 Ataxin 2-binding prote 99.5 9.9E-14 2.1E-18 118.1 11.1 104 106-213 87-190 (376)
85 KOG0113 U1 small nuclear ribon 99.5 8E-14 1.7E-18 117.2 10.3 87 205-292 98-184 (335)
86 KOG0111 Cyclophilin-type pepti 99.5 2.1E-14 4.7E-19 115.2 4.0 85 207-292 9-93 (298)
87 KOG0130 RNA-binding protein RB 99.5 3.1E-13 6.7E-18 100.2 8.0 86 205-291 69-154 (170)
88 PF14259 RRM_6: RNA recognitio 99.5 2.2E-13 4.7E-18 94.5 6.8 66 118-184 1-66 (70)
89 smart00362 RRM_2 RNA recogniti 99.4 7.8E-13 1.7E-17 92.0 9.4 72 210-284 1-72 (72)
90 PLN03121 nucleic acid binding 99.4 6.9E-13 1.5E-17 110.3 10.4 78 207-289 4-81 (243)
91 PLN03213 repressor of silencin 99.4 4.4E-13 9.5E-18 120.0 9.6 83 206-293 8-92 (759)
92 PLN03120 nucleic acid binding 99.4 1.2E-12 2.5E-17 110.8 11.6 75 115-195 4-78 (260)
93 KOG0107 Alternative splicing f 99.4 2.6E-13 5.6E-18 105.5 7.0 77 113-196 8-84 (195)
94 KOG1548 Transcription elongati 99.4 1.5E-12 3.2E-17 111.9 12.0 169 205-376 131-327 (382)
95 KOG0108 mRNA cleavage and poly 99.4 6.3E-13 1.4E-17 121.9 10.1 83 209-292 19-101 (435)
96 smart00360 RRM RNA recognition 99.4 1.2E-12 2.7E-17 90.6 8.9 71 213-284 1-71 (71)
97 KOG0126 Predicted RNA-binding 99.4 1.6E-14 3.5E-19 112.6 -1.3 79 113-193 33-111 (219)
98 KOG0113 U1 small nuclear ribon 99.4 1.3E-12 2.7E-17 110.1 9.4 87 109-195 95-181 (335)
99 KOG4207 Predicted splicing fac 99.4 5.9E-13 1.3E-17 106.1 6.6 84 111-196 9-92 (256)
100 cd00590 RRM RRM (RNA recogniti 99.4 7.2E-12 1.6E-16 87.5 10.1 74 210-285 1-74 (74)
101 KOG0226 RNA-binding proteins [ 99.4 1.1E-12 2.3E-17 108.0 5.8 173 113-289 94-270 (290)
102 PLN03213 repressor of silencin 99.3 3.5E-12 7.5E-17 114.4 9.0 77 113-195 8-86 (759)
103 smart00361 RRM_1 RNA recogniti 99.3 6.3E-12 1.4E-16 86.8 8.3 62 222-284 2-70 (70)
104 PLN03121 nucleic acid binding 99.3 5.1E-12 1.1E-16 105.1 9.2 75 114-194 4-78 (243)
105 KOG0114 Predicted RNA-binding 99.3 6.4E-12 1.4E-16 88.9 8.1 78 110-192 13-90 (124)
106 PF13893 RRM_5: RNA recognitio 99.3 8.6E-12 1.9E-16 82.1 7.6 56 225-286 1-56 (56)
107 KOG0108 mRNA cleavage and poly 99.3 4.8E-12 1E-16 116.1 7.7 80 116-197 19-98 (435)
108 smart00362 RRM_2 RNA recogniti 99.3 1.4E-11 3.1E-16 85.4 8.3 65 117-183 1-65 (72)
109 KOG0130 RNA-binding protein RB 99.3 6.7E-12 1.4E-16 93.2 6.2 84 113-198 70-153 (170)
110 smart00360 RRM RNA recognition 99.3 1.9E-11 4.2E-16 84.5 8.2 64 120-183 1-64 (71)
111 KOG4210 Nuclear localization s 99.2 2.7E-11 5.8E-16 106.3 7.1 178 113-292 86-267 (285)
112 cd00590 RRM RRM (RNA recogniti 99.2 1.2E-10 2.5E-15 81.3 8.8 66 117-183 1-66 (74)
113 KOG0111 Cyclophilin-type pepti 99.2 1.4E-11 3E-16 99.2 4.1 84 113-198 8-91 (298)
114 KOG0112 Large RNA-binding prot 99.2 3.9E-11 8.4E-16 115.1 6.9 165 111-292 368-534 (975)
115 KOG0415 Predicted peptidyl pro 99.1 7.3E-11 1.6E-15 101.7 6.6 87 204-291 235-321 (479)
116 KOG0129 Predicted RNA-binding 99.1 7.7E-10 1.7E-14 100.5 12.8 154 205-374 256-424 (520)
117 KOG0128 RNA-binding protein SA 99.1 5.8E-12 1.3E-16 120.2 -2.2 152 114-291 666-817 (881)
118 KOG0132 RNA polymerase II C-te 99.1 2.4E-10 5.1E-15 108.1 7.5 78 208-292 421-498 (894)
119 KOG4307 RNA binding protein RB 99.1 1.4E-09 3.1E-14 101.6 12.5 164 210-376 313-489 (944)
120 KOG4454 RNA binding protein (R 99.1 3.5E-11 7.5E-16 97.0 1.6 143 111-277 5-151 (267)
121 KOG4208 Nucleolar RNA-binding 99.1 6.3E-10 1.4E-14 89.4 8.6 85 204-289 45-130 (214)
122 KOG0128 RNA-binding protein SA 99.1 1.7E-11 3.7E-16 117.0 -0.6 210 114-376 570-790 (881)
123 smart00361 RRM_1 RNA recogniti 99.0 7.6E-10 1.6E-14 76.3 6.9 56 129-184 2-64 (70)
124 PF13893 RRM_5: RNA recognitio 99.0 1.1E-09 2.4E-14 72.0 5.6 56 132-194 1-56 (56)
125 KOG0132 RNA polymerase II C-te 99.0 8.8E-10 1.9E-14 104.4 7.0 108 114-229 420-527 (894)
126 KOG4454 RNA binding protein (R 98.9 3.4E-10 7.4E-15 91.4 1.9 121 206-370 7-132 (267)
127 KOG0415 Predicted peptidyl pro 98.9 1.4E-09 3.1E-14 93.9 5.8 81 113-195 237-317 (479)
128 KOG4208 Nucleolar RNA-binding 98.9 2.9E-09 6.2E-14 85.6 7.0 74 111-184 45-119 (214)
129 KOG4307 RNA binding protein RB 98.9 5E-09 1.1E-13 98.1 9.3 187 98-290 294-515 (944)
130 KOG0153 Predicted RNA-binding 98.9 9.3E-09 2E-13 88.9 8.9 81 203-290 223-304 (377)
131 KOG4660 Protein Mei2, essentia 98.9 3.1E-08 6.7E-13 91.1 12.6 67 111-182 71-137 (549)
132 KOG4660 Protein Mei2, essentia 98.9 4.1E-09 9E-14 96.7 6.7 73 204-282 71-143 (549)
133 KOG4661 Hsp27-ERE-TATA-binding 98.8 7.2E-09 1.6E-13 94.9 7.5 81 208-289 405-485 (940)
134 KOG0533 RRM motif-containing p 98.8 1.4E-08 3E-13 86.0 8.1 83 208-292 83-165 (243)
135 PF04059 RRM_2: RNA recognitio 98.8 8.6E-08 1.9E-12 69.3 9.3 82 209-290 2-88 (97)
136 KOG0112 Large RNA-binding prot 98.7 8.6E-09 1.9E-13 99.4 4.9 136 205-376 369-504 (975)
137 KOG0153 Predicted RNA-binding 98.7 3.2E-08 6.9E-13 85.7 6.7 80 110-196 223-302 (377)
138 KOG4209 Splicing factor RNPS1, 98.6 4.6E-08 1E-12 83.1 5.9 83 205-289 98-180 (231)
139 KOG0226 RNA-binding proteins [ 98.6 9.7E-08 2.1E-12 79.2 5.9 81 112-194 187-267 (290)
140 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.9E-07 4.1E-12 85.9 8.1 83 112-196 402-484 (940)
141 KOG0533 RRM motif-containing p 98.6 2.2E-07 4.9E-12 78.7 7.9 79 112-193 80-158 (243)
142 KOG4210 Nuclear localization s 98.5 6.9E-08 1.5E-12 85.0 3.9 147 207-375 87-239 (285)
143 PF04059 RRM_2: RNA recognitio 98.4 2.2E-06 4.8E-11 62.0 9.3 70 115-184 1-72 (97)
144 KOG0116 RasGAP SH3 binding pro 98.4 3.8E-07 8.2E-12 83.7 6.7 79 209-289 289-367 (419)
145 KOG0116 RasGAP SH3 binding pro 98.4 1.2E-06 2.7E-11 80.4 9.0 81 110-193 283-363 (419)
146 KOG0151 Predicted splicing reg 98.4 6.7E-07 1.5E-11 84.4 7.0 86 204-290 170-258 (877)
147 KOG0151 Predicted splicing reg 98.3 1.9E-06 4.2E-11 81.5 8.3 82 112-195 171-255 (877)
148 KOG2193 IGF-II mRNA-binding pr 98.3 6.9E-08 1.5E-12 85.6 -1.2 155 116-289 2-157 (584)
149 KOG4209 Splicing factor RNPS1, 98.3 8.8E-07 1.9E-11 75.4 5.2 81 111-194 97-177 (231)
150 PF11608 Limkain-b1: Limkain b 98.3 6.2E-06 1.3E-10 56.7 7.5 71 209-290 3-78 (90)
151 KOG4676 Splicing factor, argin 98.3 9.3E-07 2E-11 77.8 4.4 163 209-373 8-199 (479)
152 KOG1995 Conserved Zn-finger pr 98.2 1.7E-06 3.8E-11 75.7 4.0 84 207-291 65-156 (351)
153 PF08777 RRM_3: RNA binding mo 98.1 5.7E-06 1.2E-10 61.4 5.3 72 209-287 2-78 (105)
154 PF08777 RRM_3: RNA binding mo 98.1 4.5E-06 9.8E-11 62.0 4.8 50 327-376 1-50 (105)
155 COG5175 MOT2 Transcriptional r 98.1 6.5E-06 1.4E-10 71.2 6.3 81 209-290 115-204 (480)
156 KOG2193 IGF-II mRNA-binding pr 98.0 3.9E-06 8.5E-11 74.7 2.3 110 209-359 2-112 (584)
157 KOG4676 Splicing factor, argin 97.9 6E-06 1.3E-10 72.9 2.2 168 115-290 7-227 (479)
158 KOG0115 RNA-binding protein p5 97.9 3.3E-05 7.2E-10 64.6 6.1 101 168-284 5-109 (275)
159 KOG4849 mRNA cleavage factor I 97.8 1.7E-05 3.7E-10 69.0 4.1 72 114-185 79-152 (498)
160 KOG1995 Conserved Zn-finger pr 97.8 6E-05 1.3E-09 66.3 6.8 82 112-195 63-152 (351)
161 KOG2591 c-Mpl binding protein, 97.7 0.00012 2.5E-09 67.9 7.2 101 166-286 146-249 (684)
162 KOG3152 TBP-binding protein, a 97.7 3.2E-05 7E-10 64.6 3.2 73 207-280 73-157 (278)
163 KOG2202 U2 snRNP splicing fact 97.7 2.1E-05 4.5E-10 66.0 2.0 67 223-290 83-149 (260)
164 PF11608 Limkain-b1: Limkain b 97.6 0.00052 1.1E-08 47.4 7.4 67 116-194 3-74 (90)
165 KOG4849 mRNA cleavage factor I 97.6 6.9E-05 1.5E-09 65.3 4.0 76 208-284 80-157 (498)
166 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.0002 4.4E-09 45.8 5.1 52 209-268 2-53 (53)
167 KOG2314 Translation initiation 97.5 0.00037 8.1E-09 64.8 8.1 80 207-288 57-143 (698)
168 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00028 6E-09 45.2 5.1 52 116-174 2-53 (53)
169 KOG1855 Predicted RNA-binding 97.5 0.00018 4E-09 64.6 5.1 79 204-283 227-318 (484)
170 KOG1996 mRNA splicing factor [ 97.5 0.0004 8.6E-09 59.3 6.8 68 222-290 300-368 (378)
171 KOG1855 Predicted RNA-binding 97.4 0.00015 3.2E-09 65.1 4.4 79 114-192 230-321 (484)
172 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0013 2.8E-08 48.1 6.8 79 207-288 5-91 (100)
173 KOG2416 Acinus (induces apopto 97.2 0.00027 5.9E-09 66.1 3.6 80 204-289 440-522 (718)
174 KOG3152 TBP-binding protein, a 97.2 0.00054 1.2E-08 57.5 4.7 72 114-185 73-156 (278)
175 KOG0115 RNA-binding protein p5 97.1 0.00058 1.3E-08 57.4 4.1 74 262-374 5-83 (275)
176 KOG2314 Translation initiation 97.1 0.0017 3.8E-08 60.5 7.5 72 113-185 56-133 (698)
177 COG5175 MOT2 Transcriptional r 97.1 0.0011 2.4E-08 57.8 5.8 79 115-195 114-201 (480)
178 PF08675 RNA_bind: RNA binding 96.9 0.0044 9.5E-08 42.9 6.2 55 208-272 9-63 (87)
179 PF08952 DUF1866: Domain of un 96.9 0.0041 8.8E-08 48.3 6.5 58 223-290 51-108 (146)
180 PF10309 DUF2414: Protein of u 96.7 0.01 2.2E-07 39.0 6.7 54 209-271 6-62 (62)
181 PF10309 DUF2414: Protein of u 96.4 0.029 6.4E-07 36.8 7.1 55 115-177 5-62 (62)
182 PF05172 Nup35_RRM: Nup53/35/4 96.2 0.014 2.9E-07 42.8 5.6 63 113-183 4-79 (100)
183 KOG0804 Cytoplasmic Zn-finger 96.2 0.03 6.4E-07 51.2 8.8 68 208-277 74-141 (493)
184 PF07576 BRAP2: BRCA1-associat 96.1 0.067 1.5E-06 39.9 9.0 69 208-278 13-81 (110)
185 KOG2068 MOT2 transcription fac 96.1 0.003 6.5E-08 55.6 1.8 80 209-290 78-164 (327)
186 KOG2202 U2 snRNP splicing fact 96.0 0.0041 8.8E-08 52.5 2.2 60 130-192 83-143 (260)
187 KOG1996 mRNA splicing factor [ 96.0 0.021 4.5E-07 49.2 6.3 61 129-191 300-361 (378)
188 KOG2253 U1 snRNP complex, subu 95.9 0.0099 2.1E-07 56.9 4.3 71 113-192 38-108 (668)
189 PF08675 RNA_bind: RNA binding 95.8 0.045 9.8E-07 38.0 6.3 56 115-179 9-64 (87)
190 PF07576 BRAP2: BRCA1-associat 95.6 0.18 3.8E-06 37.7 9.1 69 113-183 11-80 (110)
191 KOG2416 Acinus (induces apopto 95.5 0.013 2.9E-07 55.2 3.7 67 111-183 440-507 (718)
192 PF10567 Nab6_mRNP_bdg: RNA-re 95.5 0.93 2E-05 39.5 14.4 161 111-273 11-213 (309)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 95.4 0.021 4.6E-07 46.8 4.0 81 207-288 6-97 (176)
194 PF07292 NID: Nmi/IFP 35 domai 95.0 0.031 6.8E-07 39.6 3.4 73 254-349 1-74 (88)
195 KOG2591 c-Mpl binding protein, 95.0 0.052 1.1E-06 51.0 5.7 63 110-179 170-234 (684)
196 PF03880 DbpA: DbpA RNA bindin 94.8 0.17 3.7E-06 34.9 6.7 67 210-286 2-74 (74)
197 PF07292 NID: Nmi/IFP 35 domai 94.7 0.051 1.1E-06 38.6 3.8 70 160-230 1-74 (88)
198 PF03467 Smg4_UPF3: Smg-4/UPF3 94.6 0.026 5.7E-07 46.3 2.6 70 113-182 5-80 (176)
199 PF04847 Calcipressin: Calcipr 94.4 0.12 2.6E-06 42.6 6.0 63 221-290 8-72 (184)
200 PF15023 DUF4523: Protein of u 94.4 0.25 5.4E-06 38.1 7.1 74 111-194 82-159 (166)
201 PF15023 DUF4523: Protein of u 94.3 0.13 2.9E-06 39.5 5.6 74 205-287 83-160 (166)
202 KOG4574 RNA-binding protein (c 94.1 0.035 7.5E-07 54.7 2.6 73 211-290 301-375 (1007)
203 PF10567 Nab6_mRNP_bdg: RNA-re 94.1 0.56 1.2E-05 40.8 9.5 159 206-372 13-200 (309)
204 KOG4574 RNA-binding protein (c 93.9 0.039 8.4E-07 54.4 2.6 76 117-198 300-375 (1007)
205 KOG4285 Mitotic phosphoprotein 93.6 0.3 6.5E-06 42.5 7.0 74 208-290 197-271 (350)
206 PF11767 SET_assoc: Histone ly 93.1 0.67 1.5E-05 31.0 6.7 56 218-283 10-65 (66)
207 KOG2135 Proteins containing th 93.0 0.058 1.2E-06 49.7 2.0 72 211-290 375-447 (526)
208 KOG2135 Proteins containing th 92.4 0.13 2.8E-06 47.5 3.4 53 324-376 369-422 (526)
209 PF08952 DUF1866: Domain of un 92.1 0.24 5.2E-06 38.7 4.0 52 131-191 52-103 (146)
210 KOG2891 Surface glycoprotein [ 91.3 0.52 1.1E-05 40.5 5.6 156 125-288 47-267 (445)
211 KOG2068 MOT2 transcription fac 91.3 0.13 2.9E-06 45.5 2.1 78 115-195 77-161 (327)
212 KOG0804 Cytoplasmic Zn-finger 90.8 1.3 2.7E-05 41.1 7.9 68 115-184 74-142 (493)
213 KOG4285 Mitotic phosphoprotein 90.8 0.64 1.4E-05 40.5 5.7 62 115-184 197-258 (350)
214 KOG4274 Positive cofactor 2 (P 90.0 0.32 6.8E-06 46.1 3.4 15 258-272 514-528 (742)
215 PF14111 DUF4283: Domain of un 88.9 0.69 1.5E-05 36.9 4.4 111 219-361 28-139 (153)
216 KOG4410 5-formyltetrahydrofola 84.2 3.6 7.8E-05 35.7 6.3 49 327-375 330-379 (396)
217 KOG2318 Uncharacterized conser 82.4 13 0.00028 35.9 9.6 130 112-288 171-307 (650)
218 KOG2253 U1 snRNP complex, subu 82.0 1.8 3.8E-05 42.1 4.0 72 205-286 37-108 (668)
219 PF04847 Calcipressin: Calcipr 80.5 3 6.4E-05 34.4 4.4 60 128-195 8-69 (184)
220 TIGR02542 B_forsyth_147 Bacter 76.1 6.8 0.00015 29.0 4.6 48 216-263 82-131 (145)
221 PF11767 SET_assoc: Histone ly 75.2 16 0.00035 24.4 5.9 49 125-182 10-58 (66)
222 KOG4410 5-formyltetrahydrofola 74.8 23 0.00049 31.0 8.1 53 111-168 326-378 (396)
223 KOG2318 Uncharacterized conser 73.6 5.4 0.00012 38.3 4.5 41 321-361 168-213 (650)
224 PF03468 XS: XS domain; Inter 72.1 3.7 8E-05 31.1 2.6 45 329-373 10-66 (116)
225 TIGR03636 L23_arch archaeal ri 70.7 11 0.00025 26.0 4.5 48 329-376 15-67 (77)
226 PRK14548 50S ribosomal protein 69.7 12 0.00026 26.4 4.5 48 329-376 22-74 (84)
227 PRK01178 rps24e 30S ribosomal 68.2 17 0.00037 26.5 5.2 49 218-267 29-81 (99)
228 KOG2295 C2H2 Zn-finger protein 67.9 1.7 3.7E-05 41.3 -0.0 70 114-183 230-299 (648)
229 KOG3424 40S ribosomal protein 66.5 25 0.00055 26.3 5.7 48 218-266 33-84 (132)
230 KOG2295 C2H2 Zn-finger protein 61.9 1.2 2.5E-05 42.4 -2.3 73 207-280 230-302 (648)
231 PF03880 DbpA: DbpA RNA bindin 61.8 33 0.00071 23.4 5.5 57 125-192 11-72 (74)
232 PF07530 PRE_C2HC: Associated 61.4 18 0.0004 24.3 4.0 64 223-289 2-65 (68)
233 PF15513 DUF4651: Domain of un 61.2 18 0.00039 23.8 3.7 20 341-360 8-27 (62)
234 KOG4483 Uncharacterized conser 59.0 69 0.0015 29.6 8.3 54 208-269 391-445 (528)
235 KOG4483 Uncharacterized conser 58.2 26 0.00057 32.2 5.5 56 114-176 390-446 (528)
236 PRK11901 hypothetical protein; 57.6 23 0.00049 31.8 5.0 61 207-273 244-306 (327)
237 KOG2891 Surface glycoprotein [ 57.5 8.6 0.00019 33.3 2.4 35 326-360 148-194 (445)
238 PTZ00071 40S ribosomal protein 57.3 30 0.00066 26.7 5.0 49 218-267 34-87 (132)
239 KOG4274 Positive cofactor 2 (P 55.6 15 0.00033 35.3 3.8 17 257-273 542-558 (742)
240 PF15513 DUF4651: Domain of un 53.6 33 0.0007 22.6 4.0 20 130-149 9-28 (62)
241 PF00403 HMA: Heavy-metal-asso 52.1 42 0.00092 21.6 4.7 46 329-374 1-46 (62)
242 PF03468 XS: XS domain; Inter 51.3 22 0.00048 26.8 3.5 46 127-175 29-75 (116)
243 PF01282 Ribosomal_S24e: Ribos 50.9 62 0.0013 22.8 5.5 49 218-267 11-63 (84)
244 PRK11901 hypothetical protein; 47.5 94 0.002 28.1 7.2 65 112-181 242-308 (327)
245 KOG4407 Predicted Rho GTPase-a 47.2 5.6 0.00012 42.1 -0.3 8 254-261 633-640 (1973)
246 KOG4019 Calcineurin-mediated s 46.3 30 0.00064 28.2 3.6 42 251-292 51-93 (193)
247 PF14893 PNMA: PNMA 45.8 13 0.00029 33.7 1.8 52 113-166 16-71 (331)
248 COG5638 Uncharacterized conser 45.6 29 0.00062 32.0 3.8 39 324-362 143-186 (622)
249 PF14111 DUF4283: Domain of un 45.3 50 0.0011 26.0 5.0 117 117-242 17-138 (153)
250 COG2004 RPS24A Ribosomal prote 44.6 82 0.0018 23.4 5.4 48 218-266 30-81 (107)
251 KOG4368 Predicted RNA binding 43.9 9.1 0.0002 36.8 0.5 7 223-229 554-560 (757)
252 KOG1295 Nonsense-mediated deca 43.7 24 0.00053 32.3 3.1 70 113-182 5-77 (376)
253 PF02166 Androgen_recep: Andro 43.4 7.9 0.00017 34.5 0.0 14 129-142 152-165 (423)
254 COG2608 CopZ Copper chaperone 42.8 83 0.0018 21.2 5.0 46 328-373 4-49 (71)
255 COG0445 GidA Flavin-dependent 40.4 1.7E+02 0.0037 28.8 8.2 85 159-244 238-336 (621)
256 KOG4592 Uncharacterized conser 39.7 85 0.0018 30.9 6.1 10 262-271 430-439 (728)
257 TIGR00110 ilvD dihydroxy-acid 38.1 1.9E+02 0.0041 28.4 8.2 47 250-299 382-428 (535)
258 PRK08211 putative dehydratase; 37.2 1.1E+02 0.0024 30.6 6.6 45 250-298 469-513 (655)
259 PRK14548 50S ribosomal protein 36.7 1.5E+02 0.0033 20.9 5.8 54 215-271 27-81 (84)
260 PF02714 DUF221: Domain of unk 35.3 49 0.0011 30.0 3.9 37 254-292 1-37 (325)
261 PTZ00191 60S ribosomal protein 35.3 90 0.002 24.6 4.7 47 329-375 83-134 (145)
262 PRK00911 dihydroxy-acid dehydr 35.0 2.1E+02 0.0046 28.2 8.0 48 250-300 397-444 (552)
263 KOG0207 Cation transport ATPas 34.9 5.7E+02 0.012 27.0 11.3 152 218-373 40-193 (951)
264 PRK10905 cell division protein 34.5 1E+02 0.0022 27.8 5.4 62 207-273 246-308 (328)
265 KOG1151 Tousled-like protein k 34.5 32 0.0007 32.5 2.4 7 215-221 395-401 (775)
266 PF00276 Ribosomal_L23: Riboso 34.3 75 0.0016 22.7 3.9 46 329-374 21-84 (91)
267 PF14893 PNMA: PNMA 34.3 47 0.001 30.3 3.4 81 207-292 17-100 (331)
268 PHA00742 hypothetical protein 34.2 22 0.00048 28.4 1.2 64 211-274 92-155 (211)
269 PF02714 DUF221: Domain of unk 33.3 86 0.0019 28.4 5.2 55 160-229 1-55 (325)
270 smart00596 PRE_C2HC PRE_C2HC d 32.9 83 0.0018 21.2 3.5 63 223-289 2-65 (69)
271 PRK05738 rplW 50S ribosomal pr 31.5 1.2E+02 0.0027 21.7 4.6 45 329-373 21-83 (92)
272 PRK12448 dihydroxy-acid dehydr 31.3 2.5E+02 0.0055 28.0 8.0 47 250-299 447-493 (615)
273 cd04894 ACT_ACR-like_1 ACT dom 30.7 62 0.0013 21.3 2.6 37 334-370 6-44 (69)
274 KOG4213 RNA-binding protein La 30.6 71 0.0015 26.1 3.5 58 115-177 111-170 (205)
275 PF13388 DUF4106: Protein of u 30.6 30 0.00065 30.4 1.5 12 130-141 266-277 (422)
276 cd04879 ACT_3PGDH-like ACT_3PG 30.1 1.5E+02 0.0033 18.9 5.0 42 330-371 2-46 (71)
277 PF11823 DUF3343: Protein of u 30.1 56 0.0012 22.1 2.6 26 253-278 3-28 (73)
278 cd00874 RNA_Cyclase_Class_II R 29.3 4.5E+02 0.0097 24.1 10.1 119 115-259 109-238 (326)
279 PF11411 DNA_ligase_IV: DNA li 29.0 36 0.00079 19.6 1.2 16 337-352 19-34 (36)
280 PF13820 Nucleic_acid_bd: Puta 28.9 1.4E+02 0.0029 23.8 4.8 60 210-273 6-67 (149)
281 KOG1151 Tousled-like protein k 28.8 27 0.00058 33.0 1.0 13 211-223 493-505 (775)
282 KOG4008 rRNA processing protei 28.8 55 0.0012 27.9 2.7 34 112-145 37-70 (261)
283 KOG1295 Nonsense-mediated deca 28.5 85 0.0018 28.9 4.0 67 209-276 8-77 (376)
284 CHL00030 rpl23 ribosomal prote 28.3 1.5E+02 0.0032 21.4 4.5 32 329-360 20-53 (93)
285 KOG0862 Synaptobrevin/VAMP-lik 28.2 57 0.0012 27.5 2.7 33 222-262 88-120 (216)
286 PHA01632 hypothetical protein 28.0 55 0.0012 20.8 2.0 21 330-350 19-39 (64)
287 cd04926 ACT_ACR_4 C-terminal 27.9 1.9E+02 0.0041 19.3 5.4 43 329-371 3-46 (72)
288 TIGR03636 L23_arch archaeal ri 27.5 2.1E+02 0.0046 19.8 5.9 56 212-270 17-73 (77)
289 COG0129 IlvD Dihydroxyacid deh 27.3 3.3E+02 0.0072 26.9 8.0 45 250-297 414-458 (575)
290 COG0445 GidA Flavin-dependent 27.2 2.3E+02 0.005 28.0 6.8 99 253-366 238-339 (621)
291 PRK06131 dihydroxy-acid dehydr 27.2 3.3E+02 0.0072 27.0 8.0 44 250-296 400-445 (571)
292 PF12687 DUF3801: Protein of u 27.1 1.8E+02 0.0039 24.5 5.6 53 223-278 45-97 (204)
293 COG3254 Uncharacterized conser 27.0 2.3E+02 0.0051 20.9 5.3 43 223-269 27-69 (105)
294 KOG4213 RNA-binding protein La 26.8 93 0.002 25.4 3.5 71 208-284 111-182 (205)
295 PF02166 Androgen_recep: Andro 26.7 21 0.00046 31.9 0.0 9 349-357 380-388 (423)
296 PF11061 DUF2862: Protein of u 26.2 1.5E+02 0.0032 19.7 3.8 41 333-374 10-53 (64)
297 KOG4679 Uncharacterized protei 25.0 2.3E+02 0.0051 26.9 6.2 26 115-141 243-268 (572)
298 PF13388 DUF4106: Protein of u 25.0 35 0.00076 30.0 1.0 8 157-164 325-332 (422)
299 COG5353 Uncharacterized protei 24.8 3.5E+02 0.0077 21.4 6.4 54 209-262 88-153 (161)
300 PF03439 Spt5-NGN: Early trans 24.3 88 0.0019 22.0 2.8 27 249-275 42-68 (84)
301 KOG4008 rRNA processing protei 24.2 60 0.0013 27.7 2.1 35 326-360 39-73 (261)
302 COG5193 LHP1 La protein, small 24.0 37 0.0008 31.4 0.9 61 208-269 174-244 (438)
303 PRK10905 cell division protein 23.6 1.7E+02 0.0037 26.4 4.9 64 113-180 245-309 (328)
304 COG5193 LHP1 La protein, small 23.3 37 0.00079 31.4 0.8 61 115-175 174-244 (438)
305 PF13689 DUF4154: Domain of un 22.9 3.7E+02 0.008 20.9 8.5 60 222-287 2-61 (145)
306 PF14480 DNA_pol3_a_NI: DNA po 22.5 1.8E+02 0.0039 19.6 4.1 33 340-373 13-45 (76)
307 KOG3702 Nuclear polyadenylated 22.2 2E+02 0.0043 28.7 5.4 73 209-283 512-584 (681)
308 COG0030 KsgA Dimethyladenosine 21.0 1.3E+02 0.0029 26.4 3.8 28 115-142 95-122 (259)
309 PRK05192 tRNA uridine 5-carbox 20.9 2.8E+02 0.006 28.0 6.3 85 159-244 238-336 (618)
310 PTZ00191 60S ribosomal protein 20.6 3.4E+02 0.0074 21.5 5.5 51 215-268 88-139 (145)
311 COG5638 Uncharacterized conser 20.3 7.3E+02 0.016 23.3 9.1 36 253-288 260-297 (622)
312 PRK10629 EnvZ/OmpR regulon mod 20.2 4.1E+02 0.0089 20.4 7.9 69 210-287 37-109 (127)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.5e-43 Score=327.11 Aligned_cols=255 Identities=26% Similarity=0.424 Sum_probs=202.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
...+|||+|||+++++++|+++|+.||+|.+|+|++|+.+|+++|||||+|.+.++|.+|++.|++..+ .++.+++.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l--~g~~i~v~~ 79 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRL--QNKTIKVSY 79 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEE--CCeeEEEEe
Confidence 468999999999999999999999999999999999999999999999999999999999999999988 567788887
Q ss_pred cccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 017133 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (376)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g 273 (376)
+.... .....++|||+|||..+++++|+++|+ .||.|..+.++.+..++.++|||||+|++.++|..||+.|||
T Consensus 80 a~~~~-----~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g 153 (352)
T TIGR01661 80 ARPSS-----DSIKGANLYVSGLPKTMTQHELESIFS-PFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNG 153 (352)
T ss_pred ecccc-----cccccceEEECCccccCCHHHHHHHHh-ccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 75432 123456899999999999999999995 999999999999988889999999999999999999999999
Q ss_pred ceecC--cceEEeecCCCCcCchhhhchhh------hhhhcCCC------------------------------------
Q 017133 274 VYCSS--RPMRIDVATPKKASGYQQQYSSQ------ALVLAGGP------------------------------------ 309 (376)
Q Consensus 274 ~~~~g--~~i~v~~~~~~~~~~~~~~~~~~------~~~~~~~~------------------------------------ 309 (376)
..+.| +.|+|.|+............... ........
T Consensus 154 ~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (352)
T TIGR01661 154 TTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQH 233 (352)
T ss_pred CccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhc
Confidence 99876 67889998765422111110000 00000000
Q ss_pred --------CCCCCC----------cCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeC------CCeE
Q 017133 310 --------GSNGAR----------VQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGC 365 (376)
Q Consensus 310 --------~~~~~~----------~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~------~~g~ 365 (376)
...... ...........+.+|||+|||+++++++|+++|++||.|++++|++ ++||
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~ 313 (352)
T TIGR01661 234 AVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGY 313 (352)
T ss_pred ccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccce
Confidence 000000 0000011122345799999999999999999999999999999985 4799
Q ss_pred EEEEeecCCCC
Q 017133 366 GFVQFANRLVS 376 (376)
Q Consensus 366 afV~F~~~e~~ 376 (376)
|||+|.+.++|
T Consensus 314 aFV~F~~~~~A 324 (352)
T TIGR01661 314 GFVSMTNYDEA 324 (352)
T ss_pred EEEEECCHHHH
Confidence 99999998875
No 2
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.5e-40 Score=324.18 Aligned_cols=226 Identities=31% Similarity=0.521 Sum_probs=198.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccccccc
Q 017133 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (376)
Q Consensus 117 ~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~ 196 (376)
+|||+|||.++||++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|.+|++.+++..+ .++.|++.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i--~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRL--GGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeeEEeecccc
Confidence 799999999999999999999999999999999999999999999999999999999999999888 567899988764
Q ss_pred CCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 017133 197 SGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (376)
Q Consensus 197 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~ 276 (376)
....+ .....+|||+|||.++++++|+++|+ .||.|.+|++..+. +++++|||||+|++.++|.+|++.|+|..+
T Consensus 80 ~~~~~---~~~~~~vfV~nLp~~~~~~~L~~~F~-~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 80 DPSLR---RSGVGNIFVKNLDKSVDNKALFDTFS-KFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccccc---ccCCCceEEcCCCccCCHHHHHHHHH-hcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 33222 22345899999999999999999996 99999999999984 588999999999999999999999999999
Q ss_pred cCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEE
Q 017133 277 SSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS 356 (376)
Q Consensus 277 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~ 356 (376)
.++.|.|.....+..+. .......++|||+|||.++|+++|+++|+.||.|.+
T Consensus 155 ~~~~i~v~~~~~~~~~~---------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~ 207 (562)
T TIGR01628 155 NDKEVYVGRFIKKHERE---------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITS 207 (562)
T ss_pred cCceEEEeccccccccc---------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEE
Confidence 99999998765543331 012233468999999999999999999999999999
Q ss_pred EEeeC-----CCeEEEEEeecCCCC
Q 017133 357 VKIPV-----GKGCGFVQFANRLVS 376 (376)
Q Consensus 357 ~~i~~-----~~g~afV~F~~~e~~ 376 (376)
+.+++ ++|||||+|.+.++|
T Consensus 208 ~~i~~~~~g~~~G~afV~F~~~e~A 232 (562)
T TIGR01628 208 AAVMKDGSGRSRGFAFVNFEKHEDA 232 (562)
T ss_pred EEEEECCCCCcccEEEEEECCHHHH
Confidence 99975 468999999998875
No 3
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.3e-40 Score=287.98 Aligned_cols=229 Identities=18% Similarity=0.347 Sum_probs=197.9
Q ss_pred CCCCCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCC
Q 017133 107 NNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (376)
Q Consensus 107 ~~~~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~ 186 (376)
.........+-||||.||.++.|++|..+|++.|.|-+++++.|+.+|.++|||||.|.+.+.|+.|++.||+..+. .+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~G 153 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PG 153 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CC
Confidence 33344567899999999999999999999999999999999999999999999999999999999999999999875 56
Q ss_pred CcccccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCC-CCCcceEEEEEeCCHHHHH
Q 017133 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN-TGRTKGYGFVRFGDENERS 265 (376)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~ 265 (376)
+.|++..+. .+++|||+|||.++++++|.+.|.+.--.|+.|.+..... ..+++|||||+|.+...|.
T Consensus 154 K~igvc~Sv-----------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa 222 (506)
T KOG0117|consen 154 KLLGVCVSV-----------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAA 222 (506)
T ss_pred CEeEEEEee-----------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHH
Confidence 777776654 5689999999999999999999964444488887776543 4678999999999999999
Q ss_pred HHHHHhCC--ceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHH
Q 017133 266 RAMTEMNG--VYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDED 343 (376)
Q Consensus 266 ~Al~~l~g--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~ 343 (376)
.|.++|-. .+++|..|.|.|+.+.... .......-+.|||+||+.++|+|.
T Consensus 223 ~aRrKl~~g~~klwgn~~tVdWAep~~e~---------------------------ded~ms~VKvLYVRNL~~~tTeE~ 275 (506)
T KOG0117|consen 223 MARRKLMPGKIKLWGNAITVDWAEPEEEP---------------------------DEDTMSKVKVLYVRNLMESTTEET 275 (506)
T ss_pred HHHhhccCCceeecCCcceeeccCcccCC---------------------------ChhhhhheeeeeeeccchhhhHHH
Confidence 99888753 5689999999999997554 122344557899999999999999
Q ss_pred HHhhhccCCCeEEEEeeCCCeEEEEEeecCCCC
Q 017133 344 LREPFSQFGEILSVKIPVGKGCGFVQFANRLVS 376 (376)
Q Consensus 344 L~~~F~~~G~i~~~~i~~~~g~afV~F~~~e~~ 376 (376)
|+++|+.||.|+.|+.+++ ||||+|.+++||
T Consensus 276 lk~~F~~~G~veRVkk~rD--YaFVHf~eR~da 306 (506)
T KOG0117|consen 276 LKKLFNEFGKVERVKKPRD--YAFVHFAEREDA 306 (506)
T ss_pred HHHHHHhccceEEeecccc--eeEEeecchHHH
Confidence 9999999999999998865 999999999886
No 4
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=2e-39 Score=305.81 Aligned_cols=223 Identities=19% Similarity=0.362 Sum_probs=185.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||++++|++|+++|+.||.|.+|+|++| .+|+++|||||+|.+.++|++||+.|++..+. .++.+.
T Consensus 54 ~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~-~Gr~l~ 131 (578)
T TIGR01648 54 QPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR-PGRLLG 131 (578)
T ss_pred CCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeec-CCcccc
Confidence 3455789999999999999999999999999999999999 68999999999999999999999999998774 234444
Q ss_pred ccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCC-CeeEEEEE-ecCCCCCcceEEEEEeCCHHHHHHHH
Q 017133 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVI-IDSNTGRTKGYGFVRFGDENERSRAM 268 (376)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g-~i~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~Al 268 (376)
+.++. ..++|||+|||.++++++|.++|+ .++ .+.++.+. .+...++++|||||+|++.++|.+|+
T Consensus 132 V~~S~-----------~~~rLFVgNLP~~~TeeeL~eeFs-kv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~Ai 199 (578)
T TIGR01648 132 VCISV-----------DNCRLFVGGIPKNKKREEILEEFS-KVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMAR 199 (578)
T ss_pred ccccc-----------cCceeEeecCCcchhhHHHHHHhh-cccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHH
Confidence 44332 357899999999999999999996 665 35544433 33345678999999999999999999
Q ss_pred HHhCC--ceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHh
Q 017133 269 TEMNG--VYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLRE 346 (376)
Q Consensus 269 ~~l~g--~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~ 346 (376)
+.|+. ..++|+.|.|.|+.++.... .......++|||+||+.++++++|++
T Consensus 200 rkL~~gki~l~Gr~I~VdwA~p~~~~d---------------------------~~~~~~~k~LfVgNL~~~~tee~L~~ 252 (578)
T TIGR01648 200 RKLMPGRIQLWGHVIAVDWAEPEEEVD---------------------------EDVMAKVKILYVRNLMTTTTEEIIEK 252 (578)
T ss_pred HHhhccceEecCceEEEEeeccccccc---------------------------ccccccccEEEEeCCCCCCCHHHHHH
Confidence 98874 45789999999998764321 11222347899999999999999999
Q ss_pred hhccC--CCeEEEEeeCCCeEEEEEeecCCCC
Q 017133 347 PFSQF--GEILSVKIPVGKGCGFVQFANRLVS 376 (376)
Q Consensus 347 ~F~~~--G~i~~~~i~~~~g~afV~F~~~e~~ 376 (376)
+|+.| |.|++|+++ ++||||+|.+.|+|
T Consensus 253 ~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A 282 (578)
T TIGR01648 253 SFSEFKPGKVERVKKI--RDYAFVHFEDREDA 282 (578)
T ss_pred HHHhcCCCceEEEEee--cCeEEEEeCCHHHH
Confidence 99999 999999877 57999999999876
No 5
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.7e-39 Score=261.41 Aligned_cols=257 Identities=28% Similarity=0.463 Sum_probs=208.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
..+..+.|.|.-||..+|++||+.+|...|+|++|++++|+.+|.+.||+||.|.++++|++|+..|||..+ ....|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrL--Q~KTIK 114 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRL--QNKTIK 114 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceee--ccceEE
Confidence 345567899999999999999999999999999999999999999999999999999999999999999888 778899
Q ss_pred ccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 017133 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (376)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ 270 (376)
++++.++...- ....|||++||..+|..||..+|+ .||.|.-.+|+.|..+|.++|.+||+|+..++|+.||+.
T Consensus 115 VSyARPSs~~I-----k~aNLYvSGlPktMtqkelE~iFs-~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~ 188 (360)
T KOG0145|consen 115 VSYARPSSDSI-----KDANLYVSGLPKTMTQKELEQIFS-PFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKG 188 (360)
T ss_pred EEeccCChhhh-----cccceEEecCCccchHHHHHHHHH-HhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHh
Confidence 99988654433 345799999999999999999997 999999999999999999999999999999999999999
Q ss_pred hCCceecC--cceEEeecCCCCcCchhhhch----hhhhhhcCCC----------------CCCCCC------------c
Q 017133 271 MNGVYCSS--RPMRIDVATPKKASGYQQQYS----SQALVLAGGP----------------GSNGAR------------V 316 (376)
Q Consensus 271 l~g~~~~g--~~i~v~~~~~~~~~~~~~~~~----~~~~~~~~~~----------------~~~~~~------------~ 316 (376)
|||.+-.| .+|.|+|+............. +.. ....++ .....+ .
T Consensus 189 lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~-rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~ 267 (360)
T KOG0145|consen 189 LNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPA-RRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLA 267 (360)
T ss_pred ccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCcc-ccCCCcccchhhhhccccccchhhhhccCCCccccccceee
Confidence 99988654 689999998764432211110 000 000000 000000 0
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeC------CCeEEEEEeecCCCC
Q 017133 317 QGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANRLVS 376 (376)
Q Consensus 317 ~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~------~~g~afV~F~~~e~~ 376 (376)
..........+.+|||.||..+.+|.-|..+|.+||.|..|+|+| .|||+||.+.+.++|
T Consensus 268 ~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEA 333 (360)
T KOG0145|consen 268 GVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 333 (360)
T ss_pred eeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHH
Confidence 011122333467999999999999999999999999999999997 479999999988765
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.3e-38 Score=310.54 Aligned_cols=244 Identities=28% Similarity=0.489 Sum_probs=198.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
...+|||+|||.++++++|+++|+.||.|.+|+++.+. +|+++|||||+|.+.++|.+|++.+++..+. ++.+.+..
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~--~~~i~v~~ 163 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLN--DKEVYVGR 163 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEec--CceEEEec
Confidence 45689999999999999999999999999999999986 7899999999999999999999999999884 45555543
Q ss_pred cccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 017133 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (376)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g 273 (376)
...............++|||+||+.++|+++|+++|+ .||.|.++.+.++. +++++|||||+|.+.++|.+|++.|+|
T Consensus 164 ~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~-~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g 241 (562)
T TIGR01628 164 FIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFA-KFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNG 241 (562)
T ss_pred cccccccccccccCCCeEEEeCCCCcCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 3222211122334456899999999999999999995 99999999999984 589999999999999999999999999
Q ss_pred ceec----CcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhc
Q 017133 274 VYCS----SRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFS 349 (376)
Q Consensus 274 ~~~~----g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~ 349 (376)
+.+. |+.|.|.++..+..+........... ..........++|||+||+.++|+++|+++|+
T Consensus 242 ~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~--------------~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~ 307 (562)
T TIGR01628 242 KKIGLAKEGKKLYVGRAQKRAEREAELRRKFEEL--------------QQERKMKAQGVNLYVKNLDDTVTDEKLRELFS 307 (562)
T ss_pred cEecccccceeeEeecccChhhhHHHHHhhHHhh--------------hhhhhcccCCCEEEEeCCCCccCHHHHHHHHH
Confidence 9999 99999999877654321110000000 00011233467899999999999999999999
Q ss_pred cCCCeEEEEeeC-----CCeEEEEEeecCCCC
Q 017133 350 QFGEILSVKIPV-----GKGCGFVQFANRLVS 376 (376)
Q Consensus 350 ~~G~i~~~~i~~-----~~g~afV~F~~~e~~ 376 (376)
.||.|+++++++ ++|||||+|.+.++|
T Consensus 308 ~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A 339 (562)
T TIGR01628 308 ECGEITSAKVMLDEKGVSRGFGFVCFSNPEEA 339 (562)
T ss_pred hcCCeEEEEEEECCCCCcCCeEEEEeCCHHHH
Confidence 999999999975 469999999998875
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-39 Score=262.77 Aligned_cols=211 Identities=32% Similarity=0.624 Sum_probs=183.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
+++.++|||+||..++||+-|..||+..|.|..|+++.| .+++
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------------e~~v 45 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------------ELKV 45 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------hhcc
Confidence 467899999999999999999999999999999999876 3556
Q ss_pred cccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 017133 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (376)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l 271 (376)
.|+.......+......--|||+.|...++-++|++.|. +||+|.+++|++|..|+++|||+||.|-+.++|+.||..|
T Consensus 46 ~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~-pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 46 NWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFA-PFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ccccCcccCCCCccccceeEEehhcchhcchHHHHHHhc-cccccccceEeecccCCcccceeEEeccchHHHHHHHHHh
Confidence 666655444444444566799999999999999999996 9999999999999999999999999999999999999999
Q ss_pred CCceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccC
Q 017133 272 NGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQF 351 (376)
Q Consensus 272 ~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~ 351 (376)
+|.-|++|.|+-.|+.+|........ ...........++.++|||+||+..+|+++|++.|++|
T Consensus 125 nGqWlG~R~IRTNWATRKp~e~n~~~----------------ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f 188 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKPSEMNGKP----------------LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF 188 (321)
T ss_pred CCeeeccceeeccccccCccccCCCC----------------ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC
Confidence 99999999999999998863321111 12223344566788999999999999999999999999
Q ss_pred CCeEEEEeeCCCeEEEEEeecCCCC
Q 017133 352 GEILSVKIPVGKGCGFVQFANRLVS 376 (376)
Q Consensus 352 G~i~~~~i~~~~g~afV~F~~~e~~ 376 (376)
|.|.+|+|-+++|||||+|.+.|+|
T Consensus 189 G~I~EVRvFk~qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 189 GPIQEVRVFKDQGYAFVRFETKEAA 213 (321)
T ss_pred CcceEEEEecccceEEEEecchhhH
Confidence 9999999999999999999999986
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.4e-37 Score=294.36 Aligned_cols=250 Identities=20% Similarity=0.262 Sum_probs=187.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHh--cCCcCCCCCCcccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY--SGSLMPNTDQPFRL 191 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l--~~~~~~~~~~~~~~ 191 (376)
++++|||+|||+++++++|+++|+.||.|.+|++++++ ++|||+|.+.++|.+|++.+ ++..+ .++++++
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k------~~afVef~~~e~A~~Ai~~~~~~~~~l--~g~~l~v 72 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK------RQALVEFEDEESAKACVNFATSVPIYI--RGQPAFF 72 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC------CEEEEEeCchHHHHHHHHHhhcCCceE--cCeEEEE
Confidence 36899999999999999999999999999999998643 79999999999999999876 44455 7788999
Q ss_pred cccccCCCCCcc-------CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Q 017133 192 NWATFSGSDRRT-------EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264 (376)
Q Consensus 192 ~~~~~~~~~~~~-------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 264 (376)
.|+......+.. ......+|+|+||++++|+++|+++|+ .||.|.+|.++++.. +++|||+|.+.++|
T Consensus 73 ~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~-~~G~V~~v~i~~~~~----~~~afVef~~~~~A 147 (481)
T TIGR01649 73 NYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFN-PYGKVLRIVTFTKNN----VFQALVEFESVNSA 147 (481)
T ss_pred EecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHh-ccCCEEEEEEEecCC----ceEEEEEECCHHHH
Confidence 887643322111 112234799999999999999999996 999999999987642 47899999999999
Q ss_pred HHHHHHhCCceecC--cceEEeecCCCCcC-----chhhhchhhhhh-------------hcC-------------CCCC
Q 017133 265 SRAMTEMNGVYCSS--RPMRIDVATPKKAS-----GYQQQYSSQALV-------------LAG-------------GPGS 311 (376)
Q Consensus 265 ~~Al~~l~g~~~~g--~~i~v~~~~~~~~~-----~~~~~~~~~~~~-------------~~~-------------~~~~ 311 (376)
.+|++.|||..|.+ +.|+|.|++..... ...+.+....+. ... +.+.
T Consensus 148 ~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 227 (481)
T TIGR01649 148 QHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSS 227 (481)
T ss_pred HHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCccccc
Confidence 99999999999954 58999999864421 011111110000 000 0000
Q ss_pred C-------------C------CCc------C-------CCCCCCCCCCcEEEEecCCC-CCCHHHHHhhhccCCCeEEEE
Q 017133 312 N-------------G------ARV------Q-------GSQSDGESNNATIFVGALDS-DVSDEDLREPFSQFGEILSVK 358 (376)
Q Consensus 312 ~-------------~------~~~------~-------~~~~~~~~~~~~l~V~nlp~-~~t~~~L~~~F~~~G~i~~~~ 358 (376)
. . ... . .......+++++|||+||++ .+|+++|+++|+.||.|.+|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vk 307 (481)
T TIGR01649 228 HGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVK 307 (481)
T ss_pred CCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEE
Confidence 0 0 000 0 00011234678999999998 699999999999999999999
Q ss_pred eeCC-CeEEEEEeecCCCC
Q 017133 359 IPVG-KGCGFVQFANRLVS 376 (376)
Q Consensus 359 i~~~-~g~afV~F~~~e~~ 376 (376)
|+++ +|+|||+|.+.++|
T Consensus 308 i~~~~~g~afV~f~~~~~A 326 (481)
T TIGR01649 308 FMKNKKETALIEMADPYQA 326 (481)
T ss_pred EEeCCCCEEEEEECCHHHH
Confidence 9875 69999999998875
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.6e-36 Score=286.28 Aligned_cols=253 Identities=18% Similarity=0.233 Sum_probs=191.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
...+|||+||++++++++|+++|+.||.|.+|.++++.. +++|||+|.+.++|.+|++.|||..+.+..+.+++.|
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 345899999999999999999999999999999987653 3689999999999999999999999977666777766
Q ss_pred cccCCC-------------------CCc----------------------------------------------------
Q 017133 194 ATFSGS-------------------DRR---------------------------------------------------- 202 (376)
Q Consensus 194 ~~~~~~-------------------~~~---------------------------------------------------- 202 (376)
+..... .+.
T Consensus 171 sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR01649 171 AKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR 250 (481)
T ss_pred ecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCC
Confidence 543110 000
Q ss_pred -------------------cCCCCCceEEECCCCC-CCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHH
Q 017133 203 -------------------TEACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262 (376)
Q Consensus 203 -------------------~~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~ 262 (376)
....++++|||+||+. .+|+++|+++|+ .||.|.+|++++++ +|+|||+|.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~-~yG~V~~vki~~~~-----~g~afV~f~~~~ 324 (481)
T TIGR01649 251 YRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFC-VYGNVERVKFMKNK-----KETALIEMADPY 324 (481)
T ss_pred CcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCC-----CCEEEEEECCHH
Confidence 0012457999999997 699999999996 99999999999863 589999999999
Q ss_pred HHHHHHHHhCCceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCC-CCCC----cCCCCCCCCCCCcEEEEecCCC
Q 017133 263 ERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGS-NGAR----VQGSQSDGESNNATIFVGALDS 337 (376)
Q Consensus 263 ~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~l~V~nlp~ 337 (376)
+|..||..|||..|.|+.|+|.+++.......+................ ...+ .........+++.+|||+|||.
T Consensus 325 ~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~ 404 (481)
T TIGR01649 325 QAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPL 404 (481)
T ss_pred HHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCC
Confidence 9999999999999999999999987653221110000000000000000 0000 0011122345778999999999
Q ss_pred CCCHHHHHhhhccCCC--eEEEEeeCC----CeEEEEEeecCCCC
Q 017133 338 DVSDEDLREPFSQFGE--ILSVKIPVG----KGCGFVQFANRLVS 376 (376)
Q Consensus 338 ~~t~~~L~~~F~~~G~--i~~~~i~~~----~g~afV~F~~~e~~ 376 (376)
++++++|+++|+.||. |+.+++... +++|||+|.+.++|
T Consensus 405 ~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A 449 (481)
T TIGR01649 405 SVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDA 449 (481)
T ss_pred CCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHH
Confidence 9999999999999998 888988653 59999999998875
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=5.7e-36 Score=285.73 Aligned_cols=261 Identities=20% Similarity=0.387 Sum_probs=197.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
....++|||+|||+.+++++|+++|..||.|.+|+++.++.+++++|||||+|.+.++|.+|+. |++..+. +++|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~--g~~i~v 162 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL--GRPIIV 162 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC--CeeeEE
Confidence 3457899999999999999999999999999999999999999999999999999999999995 8998884 555665
Q ss_pred cccccCCCC-------CccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Q 017133 192 NWATFSGSD-------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264 (376)
Q Consensus 192 ~~~~~~~~~-------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 264 (376)
.+....... ........++|||+|||..+++++|+++|+ .||.|..|.+.++..++.++|||||+|.+.++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~-~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 163 QSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFE-PFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred eecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 544322111 111122368999999999999999999995 999999999999998899999999999999999
Q ss_pred HHHHHHhCCceecCcceEEeecCCCCcCchhhhc----------------hhh----hhhhcCC----C---CCC-----
Q 017133 265 SRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQY----------------SSQ----ALVLAGG----P---GSN----- 312 (376)
Q Consensus 265 ~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~----------------~~~----~~~~~~~----~---~~~----- 312 (376)
.+|+..|+|..|.|+.|+|.|+............ ... ......+ . ...
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIAL 321 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhh
Confidence 9999999999999999999997633211100000 000 0000000 0 000
Q ss_pred ----------C--------CC-----c-C--CCCCCCCCCCcEEEEecCCCCCC----------HHHHHhhhccCCCeEE
Q 017133 313 ----------G--------AR-----V-Q--GSQSDGESNNATIFVGALDSDVS----------DEDLREPFSQFGEILS 356 (376)
Q Consensus 313 ----------~--------~~-----~-~--~~~~~~~~~~~~l~V~nlp~~~t----------~~~L~~~F~~~G~i~~ 356 (376)
. .. . . ...........+|+|.||....+ .+||++.|+.||.|++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~ 401 (457)
T TIGR01622 322 MQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVH 401 (457)
T ss_pred hccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeE
Confidence 0 00 0 0 00000224568899999955543 3789999999999999
Q ss_pred EEeeC--CCeEEEEEeecCCCC
Q 017133 357 VKIPV--GKGCGFVQFANRLVS 376 (376)
Q Consensus 357 ~~i~~--~~g~afV~F~~~e~~ 376 (376)
|.|.. ..|++||+|.+.++|
T Consensus 402 v~v~~~~~~G~~fV~F~~~e~A 423 (457)
T TIGR01622 402 IYVDTKNSAGKIYLKFSSVDAA 423 (457)
T ss_pred EEEeCCCCceeEEEEECCHHHH
Confidence 99973 579999999999876
No 11
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-36 Score=271.46 Aligned_cols=257 Identities=22% Similarity=0.368 Sum_probs=199.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccccc
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 194 (376)
..+|||++||++++.++|.++|+.+|+|..|.++.++.++.++||+||.|.-.+++..|+..+.+..+ .++.+++..+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf--~Gr~l~v~~A 82 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKF--EGRILNVDPA 82 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcc--cceecccccc
Confidence 38999999999999999999999999999999999999999999999999999999999999999888 4555666555
Q ss_pred ccCCCCCc---------------------cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceE
Q 017133 195 TFSGSDRR---------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGY 253 (376)
Q Consensus 195 ~~~~~~~~---------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~ 253 (376)
........ .-..+..+|.|+|||+.+.+.||..+|+ .||.|.+|.|.+... |+-.||
T Consensus 83 ~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs-~~G~V~Ei~IP~k~d-gklcGF 160 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFS-NFGKVVEIVIPRKKD-GKLCGF 160 (678)
T ss_pred cccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHh-hcceEEEEEcccCCC-CCccce
Confidence 43321110 0122357899999999999999999997 999999999998866 454599
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcCchhhh---------c-----hh---h---------------
Q 017133 254 GFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQ---------Y-----SS---Q--------------- 301 (376)
Q Consensus 254 afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~---------~-----~~---~--------------- 301 (376)
|||.|....+|..||+.+|+..|+||+|-|.|+-.+........ . .. .
T Consensus 161 aFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~e 240 (678)
T KOG0127|consen 161 AFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSE 240 (678)
T ss_pred EEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccc
Confidence 99999999999999999999999999999999988764432110 0 00 0
Q ss_pred hhh-hcC---------CC---------CC-CCCCcC------CCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeE
Q 017133 302 ALV-LAG---------GP---------GS-NGARVQ------GSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355 (376)
Q Consensus 302 ~~~-~~~---------~~---------~~-~~~~~~------~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~ 355 (376)
+.. ..+ .+ .+ ...... ...........+|||+|||+++|+++|.++|+.||+|.
T Consensus 241 deEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ 320 (678)
T KOG0127|consen 241 DEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVK 320 (678)
T ss_pred ccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccce
Confidence 000 000 00 00 000000 00011222358999999999999999999999999999
Q ss_pred EEEeeC------CCeEEEEEeecCCC
Q 017133 356 SVKIPV------GKGCGFVQFANRLV 375 (376)
Q Consensus 356 ~~~i~~------~~g~afV~F~~~e~ 375 (376)
++.|.. ++|.|||.|.+..+
T Consensus 321 ya~iV~~k~T~~skGtAFv~Fkt~~~ 346 (678)
T KOG0127|consen 321 YAIIVKDKDTGHSKGTAFVKFKTQIA 346 (678)
T ss_pred eEEEEeccCCCCcccceEEEeccHHH
Confidence 998864 57999999998764
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=3.1e-35 Score=277.68 Aligned_cols=174 Identities=18% Similarity=0.362 Sum_probs=153.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||+++++++|+++|..||.|.+|++++|+.+|+++|||||+|.+.++|.+|++.|+|..+. ++.+++.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~--GR~IkV~ 182 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG--GRNIKVG 182 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe--cceeeec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999984 5566665
Q ss_pred ccccCCCC------CccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 017133 193 WATFSGSD------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (376)
Q Consensus 193 ~~~~~~~~------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 266 (376)
+....... ........++|||+||+.++++++|+++|+ .||.|.++++.+++.+++++|||||+|.+.++|.+
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs-~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~k 261 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFE-AFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 261 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHh-hcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHH
Confidence 43321111 111223457999999999999999999995 99999999999999999999999999999999999
Q ss_pred HHHHhCCceecCcceEEeecCCC
Q 017133 267 AMTEMNGVYCSSRPMRIDVATPK 289 (376)
Q Consensus 267 Al~~l~g~~~~g~~i~v~~~~~~ 289 (376)
||+.||+..|+|+.|+|.++..+
T Consensus 262 AI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 262 AIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HHHHhCCCeeCCeEEEEEecCCC
Confidence 99999999999999999998754
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=4.9e-36 Score=260.69 Aligned_cols=180 Identities=23% Similarity=0.485 Sum_probs=161.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCC-cCCCCCCc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS-LMPNTDQP 188 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~-~~~~~~~~ 188 (376)
.++.+.-++|||-||..++|.||+++|++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+..|++. .+++...+
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 34466779999999999999999999999999999999999999999999999999999999999999875 58999999
Q ss_pred ccccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 017133 189 FRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (376)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al 268 (376)
|.+++++.+...- ...++|||+.|+..+||.||+++|+ +||.|++|.|++|.. +.+||||||+|.+++.|..||
T Consensus 109 vqvk~Ad~E~er~----~~e~KLFvg~lsK~~te~evr~iFs-~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Ai 182 (510)
T KOG0144|consen 109 VQVKYADGERERI----VEERKLFVGMLSKQCTENEVREIFS-RFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAI 182 (510)
T ss_pred eeecccchhhhcc----ccchhhhhhhccccccHHHHHHHHH-hhCccchhhheeccc-ccccceeEEEEehHHHHHHHH
Confidence 9999987543322 3467899999999999999999997 999999999999965 999999999999999999999
Q ss_pred HHhCCce-ec--CcceEEeecCCCCcCchh
Q 017133 269 TEMNGVY-CS--SRPMRIDVATPKKASGYQ 295 (376)
Q Consensus 269 ~~l~g~~-~~--g~~i~v~~~~~~~~~~~~ 295 (376)
+.|||.. +. ..+|.|+|+++++++.-+
T Consensus 183 ka~ng~~tmeGcs~PLVVkFADtqkdk~~~ 212 (510)
T KOG0144|consen 183 KALNGTQTMEGCSQPLVVKFADTQKDKDGK 212 (510)
T ss_pred HhhccceeeccCCCceEEEecccCCCchHH
Confidence 9999955 54 478999999998866433
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.6e-34 Score=260.01 Aligned_cols=175 Identities=26% Similarity=0.473 Sum_probs=157.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......++|||+|||+++++++|+++|+.||.|++|+|++|+.+++++|||||+|.++++|++|++.|++..+ .+++|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l--~gr~i 179 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITV--RNKRL 179 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCcc--CCcee
Confidence 3455788999999999999999999999999999999999999999999999999999999999999999988 56788
Q ss_pred cccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 017133 190 RLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (376)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 269 (376)
++.++.... .....++|||+|||.++|+++|+++|+ .||.|++++|++++.+++++|+|||+|++.++|++||+
T Consensus 180 ~V~~a~p~~-----~~~~~~~lfV~nLp~~vtee~L~~~F~-~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~ 253 (346)
T TIGR01659 180 KVSYARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIFG-KYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAIS 253 (346)
T ss_pred eeecccccc-----cccccceeEEeCCCCcccHHHHHHHHH-hcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHH
Confidence 888875432 122456899999999999999999995 99999999999999899999999999999999999999
Q ss_pred HhCCceecC--cceEEeecCCCCcC
Q 017133 270 EMNGVYCSS--RPMRIDVATPKKAS 292 (376)
Q Consensus 270 ~l~g~~~~g--~~i~v~~~~~~~~~ 292 (376)
.||+..+.+ ++|+|.+++.....
T Consensus 254 ~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 254 ALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred HhCCCccCCCceeEEEEECCccccc
Confidence 999998865 78999999876443
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=7.4e-34 Score=274.94 Aligned_cols=252 Identities=18% Similarity=0.292 Sum_probs=183.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhc------------CCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHT------------GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~------------G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 178 (376)
.....++|||||||+++++++|+++|..+ +.|..+.+ +..+|||||+|.+.++|..|| .|+
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~ 243 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALD 243 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCC
Confidence 44567899999999999999999999975 23333333 345689999999999999999 599
Q ss_pred CCcCCCCCCcccccccccCC-----------C-------------CCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCC
Q 017133 179 GSLMPNTDQPFRLNWATFSG-----------S-------------DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP 234 (376)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~-----------~-------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g 234 (376)
|..+.+ ..+++.....-. . .........++|||+|||..+++++|+++|. .||
T Consensus 244 g~~~~g--~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~G 320 (509)
T TIGR01642 244 SIIYSN--VFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLE-SFG 320 (509)
T ss_pred CeEeeC--ceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcC
Confidence 988844 555554321100 0 0001123457899999999999999999995 999
Q ss_pred CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCC
Q 017133 235 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGA 314 (376)
Q Consensus 235 ~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (376)
.|..+.++++..+|.++|||||+|.+.++|..||..|+|..|+|+.|.|.++.................... ....
T Consensus 321 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~----~~~~ 396 (509)
T TIGR01642 321 DLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTL----LAKA 396 (509)
T ss_pred CeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCcccccccccccc----cccc
Confidence 999999999988999999999999999999999999999999999999999975433211110000000000 0000
Q ss_pred CcCCCCCCCCCCCcEEEEecCCCC--C--------CHHHHHhhhccCCCeEEEEeeCC---------CeEEEEEeecCCC
Q 017133 315 RVQGSQSDGESNNATIFVGALDSD--V--------SDEDLREPFSQFGEILSVKIPVG---------KGCGFVQFANRLV 375 (376)
Q Consensus 315 ~~~~~~~~~~~~~~~l~V~nlp~~--~--------t~~~L~~~F~~~G~i~~~~i~~~---------~g~afV~F~~~e~ 375 (376)
...........+..+|+|.||... + ..++|+++|+.||.|++|.|++. .|+|||+|.+.++
T Consensus 397 ~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~ 476 (509)
T TIGR01642 397 LSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRS 476 (509)
T ss_pred chhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHH
Confidence 000001122346778999999643 1 23689999999999999999853 4899999999987
Q ss_pred C
Q 017133 376 S 376 (376)
Q Consensus 376 ~ 376 (376)
|
T Consensus 477 A 477 (509)
T TIGR01642 477 A 477 (509)
T ss_pred H
Confidence 5
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.4e-32 Score=222.12 Aligned_cols=171 Identities=30% Similarity=0.568 Sum_probs=156.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
.....|||+.|...++.++|++.|.+||+|.+++|++|.+|+++|||+||.|.+.++|+.||..++|.-| ..|.||-+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl--G~R~IRTN 137 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL--GRRTIRTN 137 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee--ccceeecc
Confidence 3466899999999999999999999999999999999999999999999999999999999999999988 77899999
Q ss_pred ccccCCCCCc-----------cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCH
Q 017133 193 WATFSGSDRR-----------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (376)
Q Consensus 193 ~~~~~~~~~~-----------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~ 261 (376)
|+..++.+.. .....+++||++|++..++|++|++.|+ .||.|.+|+++++ +||+||+|++.
T Consensus 138 WATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs-~fG~I~EVRvFk~------qGYaFVrF~tk 210 (321)
T KOG0148|consen 138 WATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFS-PFGPIQEVRVFKD------QGYAFVRFETK 210 (321)
T ss_pred ccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcc-cCCcceEEEEecc------cceEEEEecch
Confidence 9987763322 2345678999999999999999999997 9999999999988 47999999999
Q ss_pred HHHHHHHHHhCCceecCcceEEeecCCCCcC
Q 017133 262 NERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (376)
Q Consensus 262 ~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~ 292 (376)
|+|.+||..+|+.+|.|..++|.|.+.....
T Consensus 211 EaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 211 EAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred hhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 9999999999999999999999999876544
No 17
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.98 E-value=7.5e-31 Score=242.37 Aligned_cols=177 Identities=26% Similarity=0.494 Sum_probs=156.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
..++|||+|||.++++++|+.+|+.||.|..++++.+..++.++|||||+|.+.++|..|++.|++..+.+...++++.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 45689999999999999999999999999999999998889999999999999999999999999999988778888877
Q ss_pred cccCCCCCc-----------------------------------------------------------------------
Q 017133 194 ATFSGSDRR----------------------------------------------------------------------- 202 (376)
Q Consensus 194 ~~~~~~~~~----------------------------------------------------------------------- 202 (376)
+........
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 643220000
Q ss_pred ----------------cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 017133 203 ----------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (376)
Q Consensus 203 ----------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 266 (376)
.....+.+|||+|||+++++++|+++|+ .||.|.+++|++|..++.++|||||+|.+.++|.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~-~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFG-PFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 0011223699999999999999999996 99999999999999899999999999999999999
Q ss_pred HHHHhCCceecCcceEEeecCCCCc
Q 017133 267 AMTEMNGVYCSSRPMRIDVATPKKA 291 (376)
Q Consensus 267 Al~~l~g~~~~g~~i~v~~~~~~~~ 291 (376)
||..|||..|+||.|+|.|...+..
T Consensus 327 Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 327 AILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHHhCCCEECCeEEEEEEccCCCC
Confidence 9999999999999999999987743
No 18
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.8e-31 Score=238.10 Aligned_cols=215 Identities=30% Similarity=0.565 Sum_probs=191.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccccc
Q 017133 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (376)
Q Consensus 116 ~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~ 195 (376)
..|||| +++||..|.++|+.+|+|+++++.+|. + +.|||||.|.++++|.+|+..+|...+ .++++|+.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~--~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVL--KGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCccc--CCcEEEeehhc
Confidence 468999 999999999999999999999999998 5 999999999999999999999999999 88999999987
Q ss_pred cCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 017133 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (376)
Q Consensus 196 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~ 275 (376)
..+. .|||.||+.+++..+|.++|+ .||.|++|++..+.. | ++|| ||+|+++++|.+||+.|||..
T Consensus 74 rd~~----------~~~i~nl~~~~~~~~~~d~f~-~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~l 139 (369)
T KOG0123|consen 74 RDPS----------LVFIKNLDESIDNKSLYDTFS-EFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGML 139 (369)
T ss_pred cCCc----------eeeecCCCcccCcHHHHHHHH-hhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcc
Confidence 4332 299999999999999999996 999999999999965 5 9999 999999999999999999999
Q ss_pred ecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeE
Q 017133 276 CSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355 (376)
Q Consensus 276 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~ 355 (376)
+.++.|.|.....+..+.... .. ....-+.++|.|++.+++++.|.++|..||.|.
T Consensus 140 l~~kki~vg~~~~~~er~~~~-----------------------~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~ 195 (369)
T KOG0123|consen 140 LNGKKIYVGLFERKEEREAPL-----------------------GE-YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSIT 195 (369)
T ss_pred cCCCeeEEeeccchhhhcccc-----------------------cc-hhhhhhhhheeccccccchHHHHHhhcccCcce
Confidence 999999999988876652111 11 233456799999999999999999999999999
Q ss_pred EEEeeC-----CCeEEEEEeecCCCC
Q 017133 356 SVKIPV-----GKGCGFVQFANRLVS 376 (376)
Q Consensus 356 ~~~i~~-----~~g~afV~F~~~e~~ 376 (376)
++.+++ +++|+||.|.++++|
T Consensus 196 s~~v~~~~~g~~~~~gfv~f~~~e~a 221 (369)
T KOG0123|consen 196 SVAVMRDSIGKSKGFGFVNFENPEDA 221 (369)
T ss_pred EEEEeecCCCCCCCccceeecChhHH
Confidence 999986 479999999998765
No 19
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=2.2e-29 Score=237.85 Aligned_cols=231 Identities=19% Similarity=0.237 Sum_probs=176.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEee-cCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIR-NKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~-v~~~~~~~-~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.+.++|||+|||+++++++|.+.|+.++. ++++.+.. +...++++|||||+|.+.++|..|++.|+...+...++.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 35689999999999999999999999863 44444432 23456789999999999999999999887654444678899
Q ss_pred ccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhC--CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 017133 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKY--PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (376)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~--g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al 268 (376)
+.|+..............++|||+||+.++++++|+++|+ .| |.|++|++++ +||||+|++.++|.+|+
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~-~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFS-EFKPGKVERVKKIR--------DYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHH-hcCCCceEEEEeec--------CeEEEEeCCHHHHHHHH
Confidence 9998876554444455568999999999999999999995 99 9999998764 49999999999999999
Q ss_pred HHhCCceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhh
Q 017133 269 TEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPF 348 (376)
Q Consensus 269 ~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F 348 (376)
+.||+..|+|+.|+|.|+++........... .....................+...++++.|+++..+++-+.++|
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~r----g~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f 362 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKKSYVRYTR----GTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFP 362 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCccccccccc----ccCCCcccccccccccCcccCccccccccccccccccccchhhcc
Confidence 9999999999999999998865432111100 000000000011111122344567899999999999999999999
Q ss_pred ccCCCeEE
Q 017133 349 SQFGEILS 356 (376)
Q Consensus 349 ~~~G~i~~ 356 (376)
..+|.|..
T Consensus 363 ~~~g~~~~ 370 (578)
T TIGR01648 363 RMPGPIRG 370 (578)
T ss_pred ccCccccC
Confidence 99998764
No 20
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=2.8e-29 Score=226.10 Aligned_cols=140 Identities=27% Similarity=0.526 Sum_probs=126.1
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
.....++|||+|||+++|+++|+++|+ .||.|++|+|++|..+++++|||||+|.+.++|++||+.|++..|.++.|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~-~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFR-TIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 344678999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCC-
Q 017133 284 DVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG- 362 (376)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~- 362 (376)
.|+++.... ...++|||.|||.++|+++|+++|+.||.|++++|+++
T Consensus 182 ~~a~p~~~~--------------------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 182 SYARPGGES--------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred ecccccccc--------------------------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence 998753211 12358999999999999999999999999999999864
Q ss_pred -----CeEEEEEeecCCCC
Q 017133 363 -----KGCGFVQFANRLVS 376 (376)
Q Consensus 363 -----~g~afV~F~~~e~~ 376 (376)
++||||+|.+.|+|
T Consensus 230 ~tg~~kG~aFV~F~~~e~A 248 (346)
T TIGR01659 230 LTGTPRGVAFVRFNKREEA 248 (346)
T ss_pred CCCccceEEEEEECCHHHH
Confidence 48999999998875
No 21
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.4e-28 Score=222.65 Aligned_cols=243 Identities=29% Similarity=0.453 Sum_probs=193.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccccc
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 194 (376)
...|||.||+++++..+|.++|+.||.|.+|++.++. .| ++|| ||+|+++++|++|+..+||..+.+....+-+...
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 3349999999999999999999999999999999997 45 9999 9999999999999999999998655444433322
Q ss_pred ccCCCCCc-cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 017133 195 TFSGSDRR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (376)
Q Consensus 195 ~~~~~~~~-~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g 273 (376)
........ .....-..++|.+++.+++++.|.++|. .+|.|..+.++.+.. +.+++|+||.|++.++|..|++.|++
T Consensus 153 ~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~-~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~ 230 (369)
T KOG0123|consen 153 KEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFS-AYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNG 230 (369)
T ss_pred hhhhcccccchhhhhhhhheeccccccchHHHHHhhc-ccCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccC
Confidence 21111111 1223345799999999999999999995 999999999999855 67999999999999999999999999
Q ss_pred ceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCC
Q 017133 274 VYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGE 353 (376)
Q Consensus 274 ~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~ 353 (376)
..+.+..+.|..+..+..+...-...-. ..............|||.|++..++.+.|++.|+.||+
T Consensus 231 ~~~~~~~~~V~~aqkk~e~~~~l~~~~~--------------~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~Ge 296 (369)
T KOG0123|consen 231 KIFGDKELYVGRAQKKSEREAELKRKFE--------------QEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGE 296 (369)
T ss_pred CcCCccceeecccccchhhHHHHhhhhH--------------hhhhhccccccccccccccCccccchhHHHHHHhcccc
Confidence 9999999999888774332100000000 00011122345678999999999999999999999999
Q ss_pred eEEEEeeC-----CCeEEEEEeecCCCC
Q 017133 354 ILSVKIPV-----GKGCGFVQFANRLVS 376 (376)
Q Consensus 354 i~~~~i~~-----~~g~afV~F~~~e~~ 376 (376)
|.+++|+. ++|++||+|.+.++|
T Consensus 297 I~s~kv~~~~~g~skG~gfV~fs~~eeA 324 (369)
T KOG0123|consen 297 ITSAKVMVDENGKSKGFGFVEFSSPEEA 324 (369)
T ss_pred eeeEEEEeccCCCccceEEEEcCCHHHH
Confidence 99999875 579999999998875
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.6e-28 Score=219.79 Aligned_cols=258 Identities=24% Similarity=0.414 Sum_probs=190.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccccc
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 194 (376)
.-+|+|+||||.+...+|..+|+.||.|.+|.|++.+ .|+.+|||||.|....+|..|++.+|+..+ .+++|-+.|+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i--~gR~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKI--DGRPVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCcee--cCceeEEeee
Confidence 5689999999999999999999999999999999776 677779999999999999999999999999 6788888887
Q ss_pred ccCCC-------------------------------------------CC--c---------------------------
Q 017133 195 TFSGS-------------------------------------------DR--R--------------------------- 202 (376)
Q Consensus 195 ~~~~~-------------------------------------------~~--~--------------------------- 202 (376)
-.... .. .
T Consensus 194 V~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~ 273 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGK 273 (678)
T ss_pred cccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccccccccc
Confidence 42200 00 0
Q ss_pred -------------cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 017133 203 -------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (376)
Q Consensus 203 -------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 269 (376)
.......+|||+|||+++|+++|.+.|+ .||.|..+.++.++.|++++|.|||.|.+..+|..||+
T Consensus 274 ~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fs-kFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 274 KESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFS-KFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred CcccchhccccccccccccceEEEecCCccccHHHHHHHHH-hhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 0000125899999999999999999996 99999999999999999999999999999999999998
Q ss_pred Hh-----CC-ceecCcceEEeecCCCCcCchhhhc-------hhhhhhhcC-------CCCCCCCCc-------------
Q 017133 270 EM-----NG-VYCSSRPMRIDVATPKKASGYQQQY-------SSQALVLAG-------GPGSNGARV------------- 316 (376)
Q Consensus 270 ~l-----~g-~~~~g~~i~v~~~~~~~~~~~~~~~-------~~~~~~~~~-------~~~~~~~~~------------- 316 (376)
.. .| ..|.||.|.|..+-.+.....-... ...++++.. .....+.+.
T Consensus 353 ~Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k 432 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERK 432 (678)
T ss_pred hcCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHH
Confidence 76 23 6789999999999776533211110 001111111 000000000
Q ss_pred --CCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccC-----CCeEE-EEeeC---------CCeEEEEEeecCCCC
Q 017133 317 --QGSQSDGESNNATIFVGALDSDVSDEDLREPFSQF-----GEILS-VKIPV---------GKGCGFVQFANRLVS 376 (376)
Q Consensus 317 --~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~-----G~i~~-~~i~~---------~~g~afV~F~~~e~~ 376 (376)
...+....-..++|.|.|||..++...|..+.... +.+.. ++.++ +.||+|+.|..+|.|
T Consensus 433 ~k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEha 509 (678)
T KOG0127|consen 433 RKKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHA 509 (678)
T ss_pred HHhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHH
Confidence 01122233346789999999999999998876543 22222 22222 479999999887753
No 23
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=1.4e-27 Score=185.18 Aligned_cols=175 Identities=29% Similarity=0.571 Sum_probs=157.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
.+...+|||+||+..++++-|.++|-+.|+|+++++.+|+.+...+|||||+|.++++|+-|++-|+...+ .+++|++
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkL--YgrpIrv 83 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKL--YGRPIRV 83 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHh--cCceeEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999997666 7788888
Q ss_pred cccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 017133 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (376)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ 270 (376)
+.+. ........+..|||+||.+.+++.-|.+.|+ .||.+.. -+++++..||.++|++||.|++.+.+.+|+..
T Consensus 84 ~kas----~~~~nl~vganlfvgNLd~~vDe~~L~dtFs-afG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 84 NKAS----AHQKNLDVGANLFVGNLDPEVDEKLLYDTFS-AFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred Eecc----cccccccccccccccccCcchhHHHHHHHHH-hccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 8776 2222333446899999999999999999997 9998765 48899999999999999999999999999999
Q ss_pred hCCceecCcceEEeecCCCCcCc
Q 017133 271 MNGVYCSSRPMRIDVATPKKASG 293 (376)
Q Consensus 271 l~g~~~~g~~i~v~~~~~~~~~~ 293 (376)
++|..++.|+|+|.|+..+...+
T Consensus 159 ~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred hccchhcCCceEEEEEEecCCCc
Confidence 99999999999999998877665
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=4.3e-27 Score=222.64 Aligned_cols=148 Identities=21% Similarity=0.467 Sum_probs=124.7
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
..++|||+||++++++++|+++|+ .||.|.+|++.+|+.+++++|||||+|.+.++|.+|++.|||..|+||.|+|.+.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~-~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFD-PFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHH-ccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 456899999999999999999995 9999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeC-----
Q 017133 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV----- 361 (376)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~----- 361 (376)
....... . ............++|||+|||.++++++|+++|+.||.|.+++|.+
T Consensus 185 ~~~p~a~--~-------------------~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tg 243 (612)
T TIGR01645 185 SNMPQAQ--P-------------------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR 243 (612)
T ss_pred ccccccc--c-------------------ccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCC
Confidence 4321110 0 0000011122346899999999999999999999999999999975
Q ss_pred -CCeEEEEEeecCCCC
Q 017133 362 -GKGCGFVQFANRLVS 376 (376)
Q Consensus 362 -~~g~afV~F~~~e~~ 376 (376)
++|||||+|.+.++|
T Consensus 244 ksKGfGFVeFe~~e~A 259 (612)
T TIGR01645 244 GHKGYGFIEYNNLQSQ 259 (612)
T ss_pred CcCCeEEEEECCHHHH
Confidence 479999999998865
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=6.1e-27 Score=200.02 Aligned_cols=173 Identities=18% Similarity=0.361 Sum_probs=151.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
.--|+||||.|.+.+.|+.|+..|..||+|++|.+.+|+.|+++||||||+|+-+|.|..|++.+|+..+.+ +.+++.
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGG--RNiKVg 188 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGG--RNIKVG 188 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccC--cccccc
Confidence 357999999999999999999999999999999999999999999999999999999999999999999955 445554
Q ss_pred ccccCCC------CCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 017133 193 WATFSGS------DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (376)
Q Consensus 193 ~~~~~~~------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 266 (376)
...--+. ....+...-.+|||..+.++++++||+..| +.||+|.+|.+.+++..+..|||+|++|.+..+-..
T Consensus 189 rPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVF-EAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 189 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVF-EAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred CCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHH-HhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 3211111 111223344689999999999999999999 599999999999999989999999999999999999
Q ss_pred HHHHhCCceecCcceEEeecCC
Q 017133 267 AMTEMNGVYCSSRPMRIDVATP 288 (376)
Q Consensus 267 Al~~l~g~~~~g~~i~v~~~~~ 288 (376)
||..||-+.++|..|+|..+..
T Consensus 268 AiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 268 AIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred HhhhcchhhcccceEecccccC
Confidence 9999999999999999987644
No 26
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=189.57 Aligned_cols=175 Identities=27% Similarity=0.481 Sum_probs=156.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
....|||++||..+|..||..+|++||.|..-+|..|..+|.++|.+||+|...++|+.||+.|||..-.+...+|.+++
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCC----------------------------------------------------------ccCCCCCceEEECC
Q 017133 194 ATFSGSDR----------------------------------------------------------RTEACSDLSIFVGD 215 (376)
Q Consensus 194 ~~~~~~~~----------------------------------------------------------~~~~~~~~~l~v~n 215 (376)
+.-..... ........+|||.|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 75321000 00112246899999
Q ss_pred CCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 017133 216 LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (376)
Q Consensus 216 lp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 289 (376)
|.++.+|.-|+++|+ .||.|..|++++|-.+.++|||+||.+.+-++|..||..|||..+++|.|.|.|...+
T Consensus 286 Lspd~de~~LWQlFg-pFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 286 LSPDADESILWQLFG-PFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cCCCchHhHHHHHhC-cccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 999999999999996 9999999999999999999999999999999999999999999999999999997654
No 27
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=9.7e-27 Score=203.94 Aligned_cols=175 Identities=20% Similarity=0.331 Sum_probs=155.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEeecCC-CCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQ-TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
..+++|||||||...++++|.+.+++.+ .|++|.+..+.. ..+++|||||+|.+...|..|.++|-...+.-.+..+-
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 4788999999999999999999999988 577887777643 35799999999999999999999988777766888999
Q ss_pred ccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 017133 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (376)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ 270 (376)
|.|+.+...........-+.|||+||+.++|+|.|+++|. .||.|++|+.++| ||||+|.++++|.+|++.
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~-~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFN-EFGKVERVKKPRD--------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHH-hccceEEeecccc--------eeEEeecchHHHHHHHHH
Confidence 9999988777666666667899999999999999999995 9999999998876 999999999999999999
Q ss_pred hCCceecCcceEEeecCCCCcCchhh
Q 017133 271 MNGVYCSSRPMRIDVATPKKASGYQQ 296 (376)
Q Consensus 271 l~g~~~~g~~i~v~~~~~~~~~~~~~ 296 (376)
+||+.|+|..|+|.++++..+.+..+
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred hcCceecCceEEEEecCChhhhccch
Confidence 99999999999999999977665443
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.94 E-value=2.8e-26 Score=212.07 Aligned_cols=232 Identities=22% Similarity=0.364 Sum_probs=181.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...+.|+|+|||..+..++|..+|..||.|..+.+..... .++|+|.+..+|..|++.|....+ ...++.+.
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~------~aiv~fl~p~eAr~Afrklaysr~--k~~plyle 454 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGT------GAIVEFLNPLEARKAFRKLAYSRF--KSAPLYLE 454 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcccc------eeeeeecCccchHHHHHHhchhhh--ccCccccc
Confidence 4567899999999999999999999999999996653332 499999999999999999887766 33444444
Q ss_pred ccccCCCC--------------C----c---------------------------cCCCCCceEEECCCCCCCcHHHHHH
Q 017133 193 WATFSGSD--------------R----R---------------------------TEACSDLSIFVGDLAPDVTDSILQE 227 (376)
Q Consensus 193 ~~~~~~~~--------------~----~---------------------------~~~~~~~~l~v~nlp~~~t~~~l~~ 227 (376)
|+...... . . ......++|||.||++++|.++|..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 43311000 0 0 0001112499999999999999999
Q ss_pred HHhhhCCCeeEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcCchhhhchhhhhh
Q 017133 228 TFSSKYPSVKGAKVIIDSNTG---RTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALV 304 (376)
Q Consensus 228 ~F~~~~g~i~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~ 304 (376)
.|. ..|.|..+.|.+.+... .+.||+||+|.+.++|.+|++.|+|+.|+|+.|.|+++..+....
T Consensus 535 ~F~-k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~----------- 602 (725)
T KOG0110|consen 535 LFS-KQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPAST----------- 602 (725)
T ss_pred HHH-hcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccc-----------
Confidence 996 89999999887664321 245999999999999999999999999999999999998322110
Q ss_pred hcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeC------CCeEEEEEeecCCCC
Q 017133 305 LAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANRLVS 376 (376)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~------~~g~afV~F~~~e~~ 376 (376)
..........++.|+|+|||+..+..+|+++|+.||.|.+|+|++ ++|||||+|-++.+|
T Consensus 603 ------------~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea 668 (725)
T KOG0110|consen 603 ------------VGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREA 668 (725)
T ss_pred ------------cccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHH
Confidence 001112223378999999999999999999999999999999987 489999999987664
No 29
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.94 E-value=1.5e-26 Score=208.39 Aligned_cols=262 Identities=19% Similarity=0.356 Sum_probs=194.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++||+--|+..+++.+|.+||+.+|.|.+|.++.|+++++++|.+||+|.+.+++-.|+ .|.|..+ .+.+|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrl--lg~pv~ 251 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRL--LGVPVI 251 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcc--cCceeE
Confidence 3446678999999999999999999999999999999999999999999999999999999999 7899888 555665
Q ss_pred ccccccCCCC---------CccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCH
Q 017133 191 LNWATFSGSD---------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (376)
Q Consensus 191 ~~~~~~~~~~---------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~ 261 (376)
+......... ...-..+-..|||+||.+++++++|+.+| +.||.|+.|.+.+|..||.++||+||+|.+.
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~if-epfg~Ie~v~l~~d~~tG~skgfGfi~f~~~ 330 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIF-EPFGKIENVQLTKDSETGRSKGFGFITFVNK 330 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhc-cCcccceeeeeccccccccccCcceEEEecH
Confidence 5443322111 01112223349999999999999999999 6999999999999988999999999999999
Q ss_pred HHHHHHHHHhCCceecCcceEEeecCCCCcCchh-hhchh------------------------------------hhhh
Q 017133 262 NERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQ-QQYSS------------------------------------QALV 304 (376)
Q Consensus 262 ~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~-~~~~~------------------------------------~~~~ 304 (376)
++|.+|++.|||.+|.|+.|+|.....+...... ..... ..+.
T Consensus 331 ~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~ 410 (549)
T KOG0147|consen 331 EDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALL 410 (549)
T ss_pred HHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHH
Confidence 9999999999999999999999877554322111 00000 0000
Q ss_pred hcCCCC-----CC----CCCcCC-CCCCCCCCCcEEEEecCCCC--CC--------HHHHHhhhccCCCeEEEEeeCCC-
Q 017133 305 LAGGPG-----SN----GARVQG-SQSDGESNNATIFVGALDSD--VS--------DEDLREPFSQFGEILSVKIPVGK- 363 (376)
Q Consensus 305 ~~~~~~-----~~----~~~~~~-~~~~~~~~~~~l~V~nlp~~--~t--------~~~L~~~F~~~G~i~~~~i~~~~- 363 (376)
...+-. .. ....+. ..+.-..++.++.+.||=.. .| .||+.+.++.||.|.+|.+.++.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~ 490 (549)
T KOG0147|consen 411 LLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA 490 (549)
T ss_pred hccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC
Confidence 000000 00 000000 00111145667888888333 22 47888889999999999998865
Q ss_pred eEEEEEeecCCCC
Q 017133 364 GCGFVQFANRLVS 376 (376)
Q Consensus 364 g~afV~F~~~e~~ 376 (376)
|+.||.|.+.+.|
T Consensus 491 g~VYvrc~s~~~A 503 (549)
T KOG0147|consen 491 GCVYVRCPSAEAA 503 (549)
T ss_pred ceEEEecCcHHHH
Confidence 9999999998765
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=5.6e-25 Score=213.08 Aligned_cols=174 Identities=19% Similarity=0.303 Sum_probs=144.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||+.+++++|+++|..||.|..+.++.+..+|.++|||||+|.+.++|..|+..|+|..+. +..|++.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~--~~~l~v~ 370 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG--DNKLHVQ 370 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC--CeEEEEE
Confidence 45689999999999999999999999999999999999989999999999999999999999999999984 4556666
Q ss_pred ccccCCCCCc-----------------------cCCCCCceEEECCCCCCC----------cHHHHHHHHhhhCCCeeEE
Q 017133 193 WATFSGSDRR-----------------------TEACSDLSIFVGDLAPDV----------TDSILQETFSSKYPSVKGA 239 (376)
Q Consensus 193 ~~~~~~~~~~-----------------------~~~~~~~~l~v~nlp~~~----------t~~~l~~~F~~~~g~i~~v 239 (376)
++........ ....++.+|+|.||.... ..++|+++|+ .||.|+.|
T Consensus 371 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~-~~G~v~~v 449 (509)
T TIGR01642 371 RACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFS-KYGPLINI 449 (509)
T ss_pred ECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHH-hcCCeeEE
Confidence 6543211100 112356789999996321 2368999995 99999999
Q ss_pred EEEecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 017133 240 KVIIDS---NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (376)
Q Consensus 240 ~i~~~~---~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 289 (376)
.|.++. .++...|++||+|.+.++|.+|+..|||..|+|+.|.|.|....
T Consensus 450 ~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 450 VIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGED 502 (509)
T ss_pred EeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCHH
Confidence 998753 33556799999999999999999999999999999999998754
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.5e-26 Score=200.42 Aligned_cols=138 Identities=28% Similarity=0.546 Sum_probs=124.8
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-ec--CcceE
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CS--SRPMR 282 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~-~~--g~~i~ 282 (376)
.+.-+|||+-+|..|+|.||+++| ++||.|.+|.|++|+.++.++|||||.|.+.++|.+|+.+||+.+ |- ..+|.
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lF-e~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELF-EKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred chhhhheeccCCccccHHHHHHHH-HHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 455689999999999999999999 699999999999999999999999999999999999999999865 43 48899
Q ss_pred EeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeC-
Q 017133 283 IDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV- 361 (376)
Q Consensus 283 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~- 361 (376)
|+|++..+.+. ...++|||+-|+..+||+||+++|++||.|++|.|+|
T Consensus 111 vk~Ad~E~er~-------------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd 159 (510)
T KOG0144|consen 111 VKYADGERERI-------------------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD 159 (510)
T ss_pred ecccchhhhcc-------------------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheec
Confidence 99998765541 3457999999999999999999999999999999998
Q ss_pred ----CCeEEEEEeecCCC
Q 017133 362 ----GKGCGFVQFANRLV 375 (376)
Q Consensus 362 ----~~g~afV~F~~~e~ 375 (376)
+||||||+|.+.|-
T Consensus 160 ~~~~sRGcaFV~fstke~ 177 (510)
T KOG0144|consen 160 PDGLSRGCAFVKFSTKEM 177 (510)
T ss_pred ccccccceeEEEEehHHH
Confidence 68999999998863
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=2.3e-24 Score=205.94 Aligned_cols=149 Identities=29% Similarity=0.474 Sum_probs=125.3
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
...++|||+|||..+++++|+++|+ .||.|..|.++++..+++++|||||+|.+.++|.+||. |+|..+.|++|.|.+
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~-~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFS-KVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 3467999999999999999999995 99999999999999999999999999999999999995 899999999999998
Q ss_pred cCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeC----
Q 017133 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV---- 361 (376)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~---- 361 (376)
+........... .......+..++|||+|||..+|+++|+++|+.||.|.+|.+++
T Consensus 165 ~~~~~~~~~~~~--------------------~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~ 224 (457)
T TIGR01622 165 SQAEKNRAAKAA--------------------THQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPET 224 (457)
T ss_pred cchhhhhhhhcc--------------------cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCC
Confidence 765432210000 00001122368999999999999999999999999999999984
Q ss_pred --CCeEEEEEeecCCCC
Q 017133 362 --GKGCGFVQFANRLVS 376 (376)
Q Consensus 362 --~~g~afV~F~~~e~~ 376 (376)
++|||||+|.+.++|
T Consensus 225 g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 225 GRSKGFGFIQFHDAEEA 241 (457)
T ss_pred CccceEEEEEECCHHHH
Confidence 469999999998865
No 33
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=5.7e-25 Score=182.74 Aligned_cols=149 Identities=23% Similarity=0.464 Sum_probs=134.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccccc
Q 017133 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (376)
Q Consensus 116 ~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~ 195 (376)
.+|||||||..+++.+|+.+|++||.|.+|.|+++ |+||..++...++.||+.|++..+ .+..|+|+.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtL--hg~nInVeaSk 72 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTL--HGVNINVEASK 72 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhccccee--cceEEEEEecc
Confidence 47999999999999999999999999999999985 899999999999999999999999 44556665544
Q ss_pred cCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 017133 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (376)
Q Consensus 196 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~ 275 (376)
.+ ...+++|+|+||.+.++.+||+..| ++||.|.+|+|++| |+||+|+..++|..|++.|++++
T Consensus 73 sK-------sk~stkl~vgNis~tctn~ElRa~f-e~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~ 136 (346)
T KOG0109|consen 73 SK-------SKASTKLHVGNISPTCTNQELRAKF-EKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTE 136 (346)
T ss_pred cc-------CCCccccccCCCCccccCHHHhhhh-cccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccc
Confidence 22 4467799999999999999999999 59999999999977 99999999999999999999999
Q ss_pred ecCcceEEeecCCCC
Q 017133 276 CSSRPMRIDVATPKK 290 (376)
Q Consensus 276 ~~g~~i~v~~~~~~~ 290 (376)
+.|++++|..+..+-
T Consensus 137 ~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 137 FQGKRMHVQLSTSRL 151 (346)
T ss_pred cccceeeeeeecccc
Confidence 999999999987653
No 34
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.90 E-value=1.9e-22 Score=175.17 Aligned_cols=254 Identities=17% Similarity=0.260 Sum_probs=191.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
..--+++|+++-+.++-+-|..+|++||.|..|.-..+.+ + =-|+|.|.+.+.|..|...|+|..+...++.+|+.
T Consensus 148 n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn-~---FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId 223 (492)
T KOG1190|consen 148 NPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN-G---FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRID 223 (492)
T ss_pred ceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc-c---hhhhhhccchhhHHHHHHhccCCcccCceeEEEee
Confidence 3456899999999999999999999999998876555432 1 25889999999999999999999999888999987
Q ss_pred ccccCCCC---------------------------------------------------------CccCCC-CCceEEEC
Q 017133 193 WATFSGSD---------------------------------------------------------RRTEAC-SDLSIFVG 214 (376)
Q Consensus 193 ~~~~~~~~---------------------------------------------------------~~~~~~-~~~~l~v~ 214 (376)
++...... .+.+.. .+..|.|.
T Consensus 224 ~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvs 303 (492)
T KOG1190|consen 224 FSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVS 303 (492)
T ss_pred hhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEe
Confidence 76422100 000000 14678888
Q ss_pred CC-CCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcCc
Q 017133 215 DL-APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASG 293 (376)
Q Consensus 215 nl-p~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~ 293 (376)
|| +..+|.+.|..+|+ .||+|.+|+|+.++. --|+|+|.+...|..|++.|+|..+.|+.|+|.+++.....-
T Consensus 304 nln~~~VT~d~LftlFg-vYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vql 377 (492)
T KOG1190|consen 304 NLNEEAVTPDVLFTLFG-VYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQL 377 (492)
T ss_pred cCchhccchhHHHHHHh-hhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccC
Confidence 88 46789999999997 999999999998754 379999999999999999999999999999999998865443
Q ss_pred hhhhchhhhhhhcCCCCCCCCC---cCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEE-Ee-eCCCeEEEE
Q 017133 294 YQQQYSSQALVLAGGPGSNGAR---VQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSV-KI-PVGKGCGFV 368 (376)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~-~i-~~~~g~afV 368 (376)
-.+...+..+...-........ -........+++.+|++.|||.++++|+|+.+|..-|...+. ++ .+++.+|++
T Consensus 378 p~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~ 457 (492)
T KOG1190|consen 378 PREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALP 457 (492)
T ss_pred CCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeec
Confidence 2222222222111111111110 012223355778899999999999999999999998766444 43 568999999
Q ss_pred EeecCCCC
Q 017133 369 QFANRLVS 376 (376)
Q Consensus 369 ~F~~~e~~ 376 (376)
.+.|.|+|
T Consensus 458 q~~sveeA 465 (492)
T KOG1190|consen 458 QLESVEEA 465 (492)
T ss_pred ccCChhHh
Confidence 99999876
No 35
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.90 E-value=3.1e-23 Score=181.13 Aligned_cols=174 Identities=26% Similarity=0.455 Sum_probs=148.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
+.++|||++|+|+++++.|++.|..||.|.+|.+++|+.+++++||+||+|.+++...+++.. ....+ .++.|....
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~--dgr~ve~k~ 81 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKL--DGRSVEPKR 81 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-ccccc--CCcccccee
Confidence 789999999999999999999999999999999999999999999999999999999998854 23334 344444444
Q ss_pred cccCCCCCc-cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 017133 194 ATFSGSDRR-TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (376)
Q Consensus 194 ~~~~~~~~~-~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~ 272 (376)
+.......+ ......++|||++||.++++++++++| +.||.|..+.++.|..+.+++||+||.|.++++..+++ ..+
T Consensus 82 av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yf-e~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~ 159 (311)
T KOG4205|consen 82 AVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYF-EQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQK 159 (311)
T ss_pred ccCcccccccccccceeEEEecCcCCCCchHHHhhhh-hccceeEeeEEeecccccccccceeeEeccccccceec-ccc
Confidence 443322222 222357799999999999999999999 59999999999999999999999999999999999998 458
Q ss_pred CceecCcceEEeecCCCCcC
Q 017133 273 GVYCSSRPMRIDVATPKKAS 292 (376)
Q Consensus 273 g~~~~g~~i~v~~~~~~~~~ 292 (376)
-+.|.++.++|+.+.++...
T Consensus 160 f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred eeeecCceeeEeeccchhhc
Confidence 89999999999999988654
No 36
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.90 E-value=8.5e-22 Score=172.36 Aligned_cols=170 Identities=17% Similarity=0.279 Sum_probs=137.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHh-cCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
.....+.+||.|||++..+.+|+++|++ .|+|+.|.++.|. +|+++|||.|+|+++|.+++|++.|+...+ .++++
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~--~GR~l 116 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEV--NGREL 116 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccc--cCceE
Confidence 4445567999999999999999999974 6899999999997 799999999999999999999999999888 44444
Q ss_pred cccccccC--------------------------------------------CC--CCcc--------------------
Q 017133 190 RLNWATFS--------------------------------------------GS--DRRT-------------------- 203 (376)
Q Consensus 190 ~~~~~~~~--------------------------------------------~~--~~~~-------------------- 203 (376)
.++..... .. ++..
T Consensus 117 ~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~l 196 (608)
T KOG4212|consen 117 VVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNL 196 (608)
T ss_pred EEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhc
Confidence 44322110 00 0000
Q ss_pred --------------CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 017133 204 --------------EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (376)
Q Consensus 204 --------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 269 (376)
......++||.||.+.+....|.+.|. --|.|+.|.+-.|+. +.++|+|.++|+..-.|..||.
T Consensus 197 fgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfg-mAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIs 274 (608)
T KOG4212|consen 197 FGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFG-MAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAIS 274 (608)
T ss_pred ccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhc-cceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHH
Confidence 111124799999999999999999995 999999999999977 7999999999999999999999
Q ss_pred HhCCceecCcceEEee
Q 017133 270 EMNGVYCSSRPMRIDV 285 (376)
Q Consensus 270 ~l~g~~~~g~~i~v~~ 285 (376)
.|++.-+..++..++.
T Consensus 275 ml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 275 MLDRQGLFDRRMTVRL 290 (608)
T ss_pred hhccCCCccccceeec
Confidence 9998666667766665
No 37
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=6.3e-23 Score=168.52 Aligned_cols=178 Identities=25% Similarity=0.466 Sum_probs=154.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCC-cCCCCCCccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS-LMPNTDQPFR 190 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~-~~~~~~~~~~ 190 (376)
..+.++||||-|...-+|+|++.+|..||.|.+|.+.+.. .|.+||||||.|.+..+|..||..|+|. .+.+....+.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 3478899999999999999999999999999999999987 7999999999999999999999999986 3566666666
Q ss_pred ccccccCC------------------------------------------------------------------------
Q 017133 191 LNWATFSG------------------------------------------------------------------------ 198 (376)
Q Consensus 191 ~~~~~~~~------------------------------------------------------------------------ 198 (376)
+++++...
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 66654220
Q ss_pred --------------------------------------------------------------------------------
Q 017133 199 -------------------------------------------------------------------------------- 198 (376)
Q Consensus 199 -------------------------------------------------------------------------------- 198 (376)
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence
Q ss_pred ---------------------CCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEE
Q 017133 199 ---------------------SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVR 257 (376)
Q Consensus 199 ---------------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~ 257 (376)
.....+..+.+.|||..||..+.+.||...|. .||.|.+.+++.|+.|+.+|.|+||.
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~-PFGhivSaKVFvDRATNQSKCFGFVS 333 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFL-PFGHIVSAKVFVDRATNQSKCFGFVS 333 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhc-cccceeeeeeeehhccccccceeeEe
Confidence 00001223346899999999999999999996 99999999999999999999999999
Q ss_pred eCCHHHHHHHHHHhCCceecCcceEEeecCCCCc
Q 017133 258 FGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (376)
Q Consensus 258 f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~ 291 (376)
|++..+|..||..|||..|+=+.|+|.+.+++..
T Consensus 334 fDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 334 FDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred cCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 9999999999999999999999999999888754
No 38
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.89 E-value=6.9e-22 Score=176.08 Aligned_cols=255 Identities=20% Similarity=0.252 Sum_probs=172.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
......|.+++|||++|++||.+||+.|+ |+++.+.+. +|+..|-|||+|.+.+++++|+++ +...+ ..+.|.|
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~m--g~RYIEV 80 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESM--GHRYIEV 80 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHh--CCceEEE
Confidence 35567899999999999999999999995 777666654 799999999999999999999964 54444 4455665
Q ss_pred cccccCCC------CCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeE-EEEEecCCCCCcceEEEEEeCCHHHH
Q 017133 192 NWATFSGS------DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENER 264 (376)
Q Consensus 192 ~~~~~~~~------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A 264 (376)
-.+..... ...........|.+++||+.||++||.++|+ -.-.|.. |.++.+. .+++.|.|||.|++.+.|
T Consensus 81 f~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFa-GL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 81 FTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFA-GLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESA 158 (510)
T ss_pred EccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhc-CCcccccceeeeccC-CCCcccceEEEecCHHHH
Confidence 44422211 1111123566899999999999999999996 5444444 4455664 478999999999999999
Q ss_pred HHHHHHhCCceecCcceEEeecCCCCcCchh----------hhch----hhhh------------------hhcC-----
Q 017133 265 SRAMTEMNGVYCSSRPMRIDVATPKKASGYQ----------QQYS----SQAL------------------VLAG----- 307 (376)
Q Consensus 265 ~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~----------~~~~----~~~~------------------~~~~----- 307 (376)
+.||.. |...|+.|.|+|-.+.....+... .-+. .+.. ....
T Consensus 159 e~Al~r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~ 237 (510)
T KOG4211|consen 159 EIALGR-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFS 237 (510)
T ss_pred HHHHHH-HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccc
Confidence 999965 778899999999766432211110 0000 0000 0000
Q ss_pred ---------CCCC--------C----CCCc---CCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEee---
Q 017133 308 ---------GPGS--------N----GARV---QGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIP--- 360 (376)
Q Consensus 308 ---------~~~~--------~----~~~~---~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~--- 360 (376)
+.++ . .... ..........+..++.++||++.++.++..+|+..-.+ .|.|-
T Consensus 238 ~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~ 316 (510)
T KOG4211|consen 238 RYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGP 316 (510)
T ss_pred cCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCC
Confidence 0000 0 0000 00001111223678889999999999999999997444 55553
Q ss_pred --CCCeEEEEEeecCCCC
Q 017133 361 --VGKGCGFVQFANRLVS 376 (376)
Q Consensus 361 --~~~g~afV~F~~~e~~ 376 (376)
+..|.|+|+|.|.|||
T Consensus 317 dGr~TGEAdveF~t~eda 334 (510)
T KOG4211|consen 317 DGRATGEADVEFATGEDA 334 (510)
T ss_pred CCccCCcceeecccchhh
Confidence 2469999999999986
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.87 E-value=4.5e-22 Score=165.60 Aligned_cols=123 Identities=22% Similarity=0.522 Sum_probs=114.5
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 288 (376)
.+|||+|||..+++.+|+.+| +.||+|.+|.|+++ |+||+.++...|+.||..|||.+|+|..|.|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lF-e~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLF-EQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHH-HhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 379999999999999999999 69999999999977 999999999999999999999999999999999987
Q ss_pred CCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCCCeEEEE
Q 017133 289 KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFV 368 (376)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~g~afV 368 (376)
|.+ .+++|+|+||.+..+.+||++.|++||.|.+++|. ++++||
T Consensus 74 Ksk----------------------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv--kdy~fv 117 (346)
T KOG0109|consen 74 KSK----------------------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV--KDYAFV 117 (346)
T ss_pred cCC----------------------------------CccccccCCCCccccCHHHhhhhcccCCceeeeee--cceeEE
Confidence 733 34799999999999999999999999999999999 589999
Q ss_pred EeecCCCC
Q 017133 369 QFANRLVS 376 (376)
Q Consensus 369 ~F~~~e~~ 376 (376)
+|+-.|+|
T Consensus 118 h~d~~eda 125 (346)
T KOG0109|consen 118 HFDRAEDA 125 (346)
T ss_pred EEeeccch
Confidence 99988875
No 40
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.87 E-value=3.5e-22 Score=155.24 Aligned_cols=139 Identities=32% Similarity=0.538 Sum_probs=122.3
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
....+|||+||+..++++-|.++|- ..|.|.++.+.+|+.+...+|||||+|.++++|+-|++-||..+|.||+|+|..
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~i-qagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~k 85 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFI-QAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNK 85 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHH-hcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEe
Confidence 3456999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEE-EeeC---
Q 017133 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSV-KIPV--- 361 (376)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~-~i~~--- 361 (376)
+..... ....+..|||+||.+.+++.-|.+.|+.||.+.+. +|++
T Consensus 86 as~~~~-------------------------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~ 134 (203)
T KOG0131|consen 86 ASAHQK-------------------------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPD 134 (203)
T ss_pred cccccc-------------------------------cccccccccccccCcchhHHHHHHHHHhccccccCCccccccc
Confidence 873211 12334799999999999999999999999988774 4444
Q ss_pred ---CCeEEEEEeecCCCC
Q 017133 362 ---GKGCGFVQFANRLVS 376 (376)
Q Consensus 362 ---~~g~afV~F~~~e~~ 376 (376)
+++||||.|.+.|.|
T Consensus 135 tg~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 135 TGNPKGFGFINYASFEAS 152 (203)
T ss_pred CCCCCCCeEEechhHHHH
Confidence 468999999998864
No 41
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=2.1e-21 Score=179.98 Aligned_cols=175 Identities=18% Similarity=0.369 Sum_probs=145.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCC---CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG---QSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 116 ~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g---~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
++|||.||+++++.++|..+|...|.|.++.|...+... .+.|||||+|.++++|..|++.|+|..+++....+++.
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999999887765321 36699999999999999999999999996655555544
Q ss_pred ccccCC--CCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 017133 193 WATFSG--SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (376)
Q Consensus 193 ~~~~~~--~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ 270 (376)
...+.. +.........+.|+|+|||+..+..+|+++|. .||.|..|+|++....+..+|||||+|-+..+|.+|++.
T Consensus 596 ~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~-aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 596 ENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFT-AFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred cCccccccccccccccccceeeeeccchHHHHHHHHHHHh-cccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 411111 11112233357999999999999999999996 999999999998855667799999999999999999999
Q ss_pred hCCceecCcceEEeecCCCCc
Q 017133 271 MNGVYCSSRPMRIDVATPKKA 291 (376)
Q Consensus 271 l~g~~~~g~~i~v~~~~~~~~ 291 (376)
|..+.|.||.|.+.|++....
T Consensus 675 l~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 675 LGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred hcccceechhhheehhccchH
Confidence 999999999999999987644
No 42
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=9.7e-22 Score=168.33 Aligned_cols=145 Identities=21% Similarity=0.480 Sum_probs=121.4
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 288 (376)
++|||+.+.+.+.|+-|+..| ..||.|++|.+..|+.|++.||||||+|+-.|.|..|++.|||..++||.|+|.+...
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF-~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAF-DPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred HheeeeeeEEEechHHHHhhc-cCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 589999999999999999999 5999999999999999999999999999999999999999999999999999985433
Q ss_pred CCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeC------C
Q 017133 289 KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------G 362 (376)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~------~ 362 (376)
-.... ..++.- ...-..-.+|||..++.+++++||+.+|+.||+|.+|.+-+ +
T Consensus 193 mpQAQ--piID~v-------------------qeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~H 251 (544)
T KOG0124|consen 193 MPQAQ--PIIDMV-------------------QEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGH 251 (544)
T ss_pred Ccccc--hHHHHH-------------------HHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCc
Confidence 22110 000000 00001235899999999999999999999999999999976 5
Q ss_pred CeEEEEEeecCCC
Q 017133 363 KGCGFVQFANRLV 375 (376)
Q Consensus 363 ~g~afV~F~~~e~ 375 (376)
+||+||+|.+..+
T Consensus 252 kGyGfiEy~n~qs 264 (544)
T KOG0124|consen 252 KGYGFIEYNNLQS 264 (544)
T ss_pred cceeeEEeccccc
Confidence 7999999988654
No 43
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=3.5e-20 Score=152.49 Aligned_cols=104 Identities=20% Similarity=0.397 Sum_probs=85.7
Q ss_pred CcccccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 017133 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (376)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 266 (376)
|+|.++.++.+.+ ...+++|||+.|...-.|||++.+|. .||.|++|.+++... |.+||+|||+|.+..+|..
T Consensus 3 rpiqvkpadsesr-----g~~drklfvgml~kqq~e~dvrrlf~-pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqa 75 (371)
T KOG0146|consen 3 RPIQVKPADSESR-----GGDDRKLFVGMLNKQQSEDDVRRLFQ-PFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQA 75 (371)
T ss_pred CCccccccccccC-----CccchhhhhhhhcccccHHHHHHHhc-ccCCcceeEEecCCC-CCCCCceEEEeccchHHHH
Confidence 5566665543322 22567999999999999999999995 999999999999865 9999999999999999999
Q ss_pred HHHHhCCce-ec--CcceEEeecCCCCcCchhhh
Q 017133 267 AMTEMNGVY-CS--SRPMRIDVATPKKASGYQQQ 297 (376)
Q Consensus 267 Al~~l~g~~-~~--g~~i~v~~~~~~~~~~~~~~ 297 (376)
||..|||.. +- ...|.|+|++..+++.+++.
T Consensus 76 AI~aLHgSqTmpGASSSLVVK~ADTdkER~lRRM 109 (371)
T KOG0146|consen 76 AINALHGSQTMPGASSSLVVKFADTDKERTLRRM 109 (371)
T ss_pred HHHHhcccccCCCCccceEEEeccchHHHHHHHH
Confidence 999999965 43 47899999998877655543
No 44
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.83 E-value=1.1e-18 Score=150.24 Aligned_cols=252 Identities=17% Similarity=0.211 Sum_probs=178.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
....+-.|.|++|-..++|.||.+.++.||+|.-+..+..+ ..|.|+|++.+.|+.++.......+...+..--
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhh
Confidence 44567799999999999999999999999999888776654 379999999999999997554444333334333
Q ss_pred ccccccC--CCCCccCCCCCceEEEC--CCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 017133 191 LNWATFS--GSDRRTEACSDLSIFVG--DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (376)
Q Consensus 191 ~~~~~~~--~~~~~~~~~~~~~l~v~--nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 266 (376)
++++... .+.......++..|.++ |--+.+|.+.|..++. ..|.|.+|.|++.. + --|+|+|++.+.|.+
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icn-p~GkVlRIvIfkkn--g---VQAmVEFdsv~~Aqr 174 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICN-PQGKVLRIVIFKKN--G---VQAMVEFDSVEVAQR 174 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcC-CCCceEEEEEEecc--c---eeeEEeechhHHHHH
Confidence 4444222 22222333344555554 4446789999999994 99999999998762 3 369999999999999
Q ss_pred HHHHhCCcee--cCcceEEeecCCCCcCchhhhchhhh-----h------------------------hhcCC----CCC
Q 017133 267 AMTEMNGVYC--SSRPMRIDVATPKKASGYQQQYSSQA-----L------------------------VLAGG----PGS 311 (376)
Q Consensus 267 Al~~l~g~~~--~g~~i~v~~~~~~~~~~~~~~~~~~~-----~------------------------~~~~~----~~~ 311 (376)
|...|||..| +-++|+|+|+++.+..-.+...+.++ + ...++ ...
T Consensus 175 Ak~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~s 254 (494)
T KOG1456|consen 175 AKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYS 254 (494)
T ss_pred HHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcc
Confidence 9999999887 45889999999876432222111111 0 00000 000
Q ss_pred ------CCC-----------CcCCCCCCCCCCCcEEEEecCCCC-CCHHHHHhhhccCCCeEEEEeeCCC-eEEEEEeec
Q 017133 312 ------NGA-----------RVQGSQSDGESNNATIFVGALDSD-VSDEDLREPFSQFGEILSVKIPVGK-GCGFVQFAN 372 (376)
Q Consensus 312 ------~~~-----------~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~F~~~G~i~~~~i~~~~-g~afV~F~~ 372 (376)
... ......+....++++++|.+|+-. +..+.|..+|..||.|+.|++++.+ |.|+|+..|
T Consensus 255 g~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd 334 (494)
T KOG1456|consen 255 GDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGD 334 (494)
T ss_pred cccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCc
Confidence 000 001112244567889999999877 6788899999999999999999854 999999987
Q ss_pred CC
Q 017133 373 RL 374 (376)
Q Consensus 373 ~e 374 (376)
.+
T Consensus 335 ~~ 336 (494)
T KOG1456|consen 335 AY 336 (494)
T ss_pred HH
Confidence 64
No 45
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.83 E-value=4.9e-20 Score=160.22 Aligned_cols=251 Identities=20% Similarity=0.277 Sum_probs=172.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
..++.|.++||||+++|+||..++.+||.|..+.+.+.++ .||++|.++++|...+..+....-.-++.++-+.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 4688999999999999999999999999999999988775 7999999999998855444333322234444443
Q ss_pred ccccCC------------------------------C-----CCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCee
Q 017133 193 WATFSG------------------------------S-----DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK 237 (376)
Q Consensus 193 ~~~~~~------------------------------~-----~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~ 237 (376)
++.... . ........-.+++|.++-+.++.|-|..+|+ +||.|.
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS-~fG~Vl 178 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFS-KFGFVL 178 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHh-hcceeE
Confidence 322110 0 0111122234678899999999999999997 999999
Q ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec--CcceEEeecCCCCcC-----chhhhchhhhhhhcCC--
Q 017133 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVATPKKAS-----GYQQQYSSQALVLAGG-- 308 (376)
Q Consensus 238 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~--g~~i~v~~~~~~~~~-----~~~~~~~~~~~~~~~~-- 308 (376)
+|.-+.... .--|+|+|.+.+.|..|...|+|+.|- .+.|+|.|++..... ...+.+.+..+..+.+
T Consensus 179 KIiTF~Knn----~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p 254 (492)
T KOG1190|consen 179 KIITFTKNN----GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQP 254 (492)
T ss_pred EEEEEeccc----chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCcccc
Confidence 986654322 225999999999999999999999883 477888888654321 1222233222222200
Q ss_pred -------------------CCCCC---CCcCCCCCCCCC--CCcEEEEecCCCC-CCHHHHHhhhccCCCeEEEEeeC-C
Q 017133 309 -------------------PGSNG---ARVQGSQSDGES--NNATIFVGALDSD-VSDEDLREPFSQFGEILSVKIPV-G 362 (376)
Q Consensus 309 -------------------~~~~~---~~~~~~~~~~~~--~~~~l~V~nlp~~-~t~~~L~~~F~~~G~i~~~~i~~-~ 362 (376)
+.... ............ ....|.|.||..+ +|.+.|..+|+-||.|..|+|.. .
T Consensus 255 ~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk 334 (492)
T KOG1190|consen 255 SLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK 334 (492)
T ss_pred ccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC
Confidence 00000 000000011111 2577888888666 89999999999999999999986 4
Q ss_pred CeEEEEEeecCC
Q 017133 363 KGCGFVQFANRL 374 (376)
Q Consensus 363 ~g~afV~F~~~e 374 (376)
+.-|+|.|.|.-
T Consensus 335 kd~ALIQmsd~~ 346 (492)
T KOG1190|consen 335 KDNALIQMSDGQ 346 (492)
T ss_pred Ccceeeeecchh
Confidence 579999998753
No 46
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=1e-19 Score=141.65 Aligned_cols=158 Identities=18% Similarity=0.340 Sum_probs=123.2
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
.+++|||+|||.++.+.||.++|. +||.|..|.+... .....||||+|++..+|+.||..-+|..++|..|+|++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFy-Kyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFY-KYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHh-hhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 467999999999999999999997 9999999988644 234579999999999999999999999999999999999
Q ss_pred CCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCCCeEE
Q 017133 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCG 366 (376)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~g~a 366 (376)
............ ....+.+ ....-.............|.|.+||.+-++.||++++...|.|....+.++ +.+
T Consensus 81 rggr~s~~~~G~-----y~gggrg-Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~G 153 (241)
T KOG0105|consen 81 RGGRSSSDRRGS-----YSGGGRG-GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVG 153 (241)
T ss_pred cCCCcccccccc-----cCCCCCC-CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cce
Confidence 776433211110 0001100 111111222334445678999999999999999999999999999999987 799
Q ss_pred EEEeecCCC
Q 017133 367 FVQFANRLV 375 (376)
Q Consensus 367 fV~F~~~e~ 375 (376)
+|+|...||
T Consensus 154 vV~~~r~eD 162 (241)
T KOG0105|consen 154 VVEYLRKED 162 (241)
T ss_pred eeeeeehhh
Confidence 999988775
No 47
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.79 E-value=5.2e-19 Score=154.74 Aligned_cols=141 Identities=28% Similarity=0.508 Sum_probs=123.5
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
..++|||++|.+.++++.|++.|+ .||+|.+|.+++|+.+++++||+||+|++.+...++|. .....|+|+.|.++.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~-~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFS-QFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhc-ccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceec
Confidence 567999999999999999999995 99999999999999999999999999999999998884 3567899999999999
Q ss_pred CCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeC-----
Q 017133 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV----- 361 (376)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~----- 361 (376)
.+..... .........+|||++||.++++++|+++|++||.|..+.++.
T Consensus 83 v~r~~~~--------------------------~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~ 136 (311)
T KOG4205|consen 83 VSREDQT--------------------------KVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTS 136 (311)
T ss_pred cCccccc--------------------------ccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccc
Confidence 8875542 111122567999999999999999999999999999998874
Q ss_pred -CCeEEEEEeecCCC
Q 017133 362 -GKGCGFVQFANRLV 375 (376)
Q Consensus 362 -~~g~afV~F~~~e~ 375 (376)
.++|+||.|+++++
T Consensus 137 ~~rgFgfv~~~~e~s 151 (311)
T KOG4205|consen 137 RPRGFGFVTFDSEDS 151 (311)
T ss_pred ccccceeeEeccccc
Confidence 57999999998876
No 48
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.78 E-value=8.2e-19 Score=151.38 Aligned_cols=259 Identities=16% Similarity=0.149 Sum_probs=173.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
..+++..|..++|||..++.+|..+|+-.-.....+.+.....|+..|++.|+|.+.|.-+.|++.... .+ ..+.+.
T Consensus 56 ~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkh-h~--g~ryie 132 (508)
T KOG1365|consen 56 SADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKH-HM--GTRYIE 132 (508)
T ss_pred ccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhh-hc--cCCcee
Confidence 456677899999999999999999998764443334444444678889999999999999999975333 23 445555
Q ss_pred ccccccCC---------C--CCccCCCCCceEEECCCCCCCcHHHHHHHHhhh---CCCeeEEEEEecCCCCCcceEEEE
Q 017133 191 LNWATFSG---------S--DRRTEACSDLSIFVGDLAPDVTDSILQETFSSK---YPSVKGAKVIIDSNTGRTKGYGFV 256 (376)
Q Consensus 191 ~~~~~~~~---------~--~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~---~g~i~~v~i~~~~~~~~~~g~afV 256 (376)
+..+.... . .......+--.|.+++||+++++.|+.++|... -|..+.|.+++.. +|+.+|.|||
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFv 211 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFV 211 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEE
Confidence 54443221 1 111112234578889999999999999999411 3356667666653 5899999999
Q ss_pred EeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCC-cCCCCCCCCCCCcEEEEecC
Q 017133 257 RFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGAR-VQGSQSDGESNNATIFVGAL 335 (376)
Q Consensus 257 ~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nl 335 (376)
.|..+++|..||.+ |...|+-|.|++-.+.......--....+..+.. ..++.... .+...........+|.+++|
T Consensus 212 lfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~--~~~sp~~p~~p~~~~p~~~~kdcvRLRGL 288 (508)
T KOG1365|consen 212 LFACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIP--GLTSPLLPGGPARLVPPTRSKDCVRLRGL 288 (508)
T ss_pred EecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccC--CCCCCCCCCCccccCCCCCCCCeeEecCC
Confidence 99999999999976 7677888999887775432221111111111111 11111111 11222223334678999999
Q ss_pred CCCCCHHHHHhhhccCC-CeEE--EEee-----CCCeEEEEEeecCCCC
Q 017133 336 DSDVSDEDLREPFSQFG-EILS--VKIP-----VGKGCGFVQFANRLVS 376 (376)
Q Consensus 336 p~~~t~~~L~~~F~~~G-~i~~--~~i~-----~~~g~afV~F~~~e~~ 376 (376)
|++.+.|||.++|..|- .|+. |.+. +..|.|||+|.+.|+|
T Consensus 289 Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a 337 (508)
T KOG1365|consen 289 PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERA 337 (508)
T ss_pred ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHH
Confidence 99999999999999995 3333 4443 2469999999999875
No 49
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1e-17 Score=130.66 Aligned_cols=152 Identities=18% Similarity=0.258 Sum_probs=124.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||.++-+.+|.++|-+||.|..|.+..- -...+||||+|++..+|+.||..-+|..++ +..++++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdyd--g~rLRVE 78 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYD--GCRLRVE 78 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccC--cceEEEE
Confidence 56899999999999999999999999999999887543 234579999999999999999999998884 4556666
Q ss_pred ccccCCCCC---------------------ccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcc
Q 017133 193 WATFSGSDR---------------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTK 251 (376)
Q Consensus 193 ~~~~~~~~~---------------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~ 251 (376)
+........ .........|.|++||.+-++.||++... .-|+|-...+.+|
T Consensus 79 fprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmR-eaGdvCfadv~rD------- 150 (241)
T KOG0105|consen 79 FPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMR-EAGDVCFADVQRD------- 150 (241)
T ss_pred eccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHH-hhCCeeeeeeecc-------
Confidence 554321000 11222345899999999999999999995 9999999998887
Q ss_pred eEEEEEeCCHHHHHHHHHHhCCceec
Q 017133 252 GYGFVRFGDENERSRAMTEMNGVYCS 277 (376)
Q Consensus 252 g~afV~f~~~~~A~~Al~~l~g~~~~ 277 (376)
|++.|+|...|+.+-|+..|....+.
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeeeeeehhhHHHHHHhhcccccc
Confidence 47999999999999999999987764
No 50
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.77 E-value=8.4e-17 Score=138.65 Aligned_cols=251 Identities=17% Similarity=0.170 Sum_probs=189.0
Q ss_pred CceEEEcCC--CCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 115 TKTIWIGDL--FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 115 ~~~v~v~nL--p~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
+..|.+.=| -+.+|.+-|..++...|.|.+|.|++. +| -.|.|+|++.+.|++|...|||..+......++++
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 344444433 489999999999999999999988876 33 37999999999999999999999998888899998
Q ss_pred ccccCCCC------------------------------------------------------------------C-----
Q 017133 193 WATFSGSD------------------------------------------------------------------R----- 201 (376)
Q Consensus 193 ~~~~~~~~------------------------------------------------------------------~----- 201 (376)
++++.... +
T Consensus 195 yAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~ 274 (494)
T KOG1456|consen 195 YAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRD 274 (494)
T ss_pred ecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcccccc
Confidence 88643100 0
Q ss_pred ------ccCCCCCceEEECCCCC-CCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 017133 202 ------RTEACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (376)
Q Consensus 202 ------~~~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~ 274 (376)
.....+...+.|.+|.. .++-+.|..+|. .||.|++|++++.+. |.|+|++.+....++|+..||+.
T Consensus 275 ~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~C-lYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~ 348 (494)
T KOG1456|consen 275 GRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFC-LYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNI 348 (494)
T ss_pred CCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhh-hcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccC
Confidence 00112235789999964 567788999997 999999999997653 68999999999999999999999
Q ss_pred eecCcceEEeecCCCCcCc-----hhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhc
Q 017133 275 YCSSRPMRIDVATPKKASG-----YQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFS 349 (376)
Q Consensus 275 ~~~g~~i~v~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~ 349 (376)
.+.|..|.|.+++-..... .....++-..........-.+..........+++++|+..|.|..+|||.|.++|.
T Consensus 349 ~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~n 428 (494)
T KOG1456|consen 349 PLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICN 428 (494)
T ss_pred ccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhh
Confidence 9999999999987554322 11111222222222222333334456677888999999999999999999999998
Q ss_pred cCC-CeEEEEeeCC----CeEEEEEeecCCCC
Q 017133 350 QFG-EILSVKIPVG----KGCGFVQFANRLVS 376 (376)
Q Consensus 350 ~~G-~i~~~~i~~~----~g~afV~F~~~e~~ 376 (376)
..+ ...+++|-.. ...+.++|++.++|
T Consensus 429 ek~v~~~svkvFp~kserSssGllEfe~~s~A 460 (494)
T KOG1456|consen 429 EKDVPPTSVKVFPLKSERSSSGLLEFENKSDA 460 (494)
T ss_pred hcCCCcceEEeecccccccccceeeeehHHHH
Confidence 875 3556666542 36789999988765
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.77 E-value=1.3e-17 Score=135.44 Aligned_cols=165 Identities=20% Similarity=0.316 Sum_probs=125.4
Q ss_pred CCceEEECCCCCCCcHHHHHH----HHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 207 SDLSIFVGDLAPDVTDSILQE----TFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~----~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
++.+|||.||+..+..++|++ +|+ .||.|.+|...+ +.+.+|-|||.|.+.+.|..|++.|+|..+-|++++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFs-qfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFS-QFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHH-hhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 445999999999999999998 996 999999998874 477899999999999999999999999999999999
Q ss_pred EeecCCCCcCchhhh---chhhh------h-----hhcCCC--C-CCCCCcCCCC-CCCCCCCcEEEEecCCCCCCHHHH
Q 017133 283 IDVATPKKASGYQQQ---YSSQA------L-----VLAGGP--G-SNGARVQGSQ-SDGESNNATIFVGALDSDVSDEDL 344 (376)
Q Consensus 283 v~~~~~~~~~~~~~~---~~~~~------~-----~~~~~~--~-~~~~~~~~~~-~~~~~~~~~l~V~nlp~~~t~~~L 344 (376)
|.|++.+.....+.. ..... . ...... . ......+... ....++..+|++.|||.+++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 999987654322211 00000 0 000000 0 0111111111 344667889999999999999999
Q ss_pred HhhhccCCCeEEEEeeC-CCeEEEEEeecCCC
Q 017133 345 REPFSQFGEILSVKIPV-GKGCGFVQFANRLV 375 (376)
Q Consensus 345 ~~~F~~~G~i~~~~i~~-~~g~afV~F~~~e~ 375 (376)
..+|+.|....+++++. -++.|||+|.++..
T Consensus 164 ~~lf~qf~g~keir~i~~~~~iAfve~~~d~~ 195 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQ 195 (221)
T ss_pred HHHHhhCcccceeEeccCCCceeEEecchhhh
Confidence 99999999999999987 46999999988653
No 52
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=6.1e-18 Score=133.69 Aligned_cols=87 Identities=33% Similarity=0.626 Sum_probs=80.9
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
....+++|||+|||+++++++|+++|. .||.|.++++++|..+++++|||||+|.+.++|++||+.|++..|.|+.|+|
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFA-HFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344567999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCc
Q 017133 284 DVATPKKA 291 (376)
Q Consensus 284 ~~~~~~~~ 291 (376)
.|+..+..
T Consensus 109 ~~a~~~~~ 116 (144)
T PLN03134 109 NPANDRPS 116 (144)
T ss_pred EeCCcCCC
Confidence 99987544
No 53
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.76 E-value=4.3e-17 Score=132.35 Aligned_cols=163 Identities=22% Similarity=0.402 Sum_probs=137.2
Q ss_pred CCceEEEcCCCCCCCHHHHHH----HHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 114 ETKTIWIGDLFHWMDETFLHN----CFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~----~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
...+|||.||+..+.-++|+. +|+.||.|.+|...+ +.+.+|-|||.|++.+.|..|++.|+|..+ .+.++
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpF--ygK~m 82 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPF--YGKPM 82 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcc--cCchh
Confidence 344999999999999999988 999999999987765 678999999999999999999999999998 66777
Q ss_pred cccccccCCCCC---------------------------------------------ccCCCCCceEEECCCCCCCcHHH
Q 017133 190 RLNWATFSGSDR---------------------------------------------RTEACSDLSIFVGDLAPDVTDSI 224 (376)
Q Consensus 190 ~~~~~~~~~~~~---------------------------------------------~~~~~~~~~l~v~nlp~~~t~~~ 224 (376)
++.++......- .....++.+|++.|||..++.+.
T Consensus 83 riqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~ 162 (221)
T KOG4206|consen 83 RIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEM 162 (221)
T ss_pred heecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHH
Confidence 777765332100 11144567899999999999999
Q ss_pred HHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CcceEEeecC
Q 017133 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVAT 287 (376)
Q Consensus 225 l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~i~v~~~~ 287 (376)
|..+|. .|....+++++... ++.|||+|.+...|..|...|.+..|. ...+.|.+++
T Consensus 163 l~~lf~-qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 163 LSDLFE-QFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHHh-hCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999995 99999999988653 369999999999999999999998886 7788887764
No 54
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.76 E-value=3.9e-17 Score=139.59 Aligned_cols=176 Identities=17% Similarity=0.272 Sum_probs=142.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCce--------EEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCC
Q 017133 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--------NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS 180 (376)
Q Consensus 109 ~~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~--------~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~ 180 (376)
......++.|||+|||.++|.+++.++|+.||.|. .|++.++. .|..+|-|++.|...+++..|+..|++.
T Consensus 128 ~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~ 206 (382)
T KOG1548|consen 128 NPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDED 206 (382)
T ss_pred CcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcc
Confidence 34456678899999999999999999999999775 48888887 5999999999999999999999999999
Q ss_pred cCCCCCCcccccccccCC---------------------------------CCCccCCCCCceEEECCCC----CCCc--
Q 017133 181 LMPNTDQPFRLNWATFSG---------------------------------SDRRTEACSDLSIFVGDLA----PDVT-- 221 (376)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~l~v~nlp----~~~t-- 221 (376)
.+ +++.++|..+.+.. ..........++|.+.|+= +..+
T Consensus 207 ~~--rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~ 284 (382)
T KOG1548|consen 207 EL--RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPD 284 (382)
T ss_pred cc--cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHH
Confidence 99 57888887775431 0111223345689998872 1222
Q ss_pred -----HHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcC
Q 017133 222 -----DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (376)
Q Consensus 222 -----~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~ 292 (376)
.+||++.+. +||.|.+|.|.- ..+.|.+-|.|.+.++|..||+.|+|+.++||.|.......+...
T Consensus 285 l~~dlkedl~eec~-K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t~~ 355 (382)
T KOG1548|consen 285 LLNDLKEDLTEECE-KFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKTKF 355 (382)
T ss_pred HHHHHHHHHHHHHH-HhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCccee
Confidence 367778885 999999997752 356899999999999999999999999999999999999876544
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.74 E-value=8.6e-18 Score=152.14 Aligned_cols=166 Identities=19% Similarity=0.337 Sum_probs=130.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccccccC
Q 017133 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFS 197 (376)
Q Consensus 118 v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~ 197 (376)
||||||...+++++|+..|+.||.|..|.+.+|..+|.++||+|++|.+.++|++|+..|||..+ .++.|+|......
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfel--AGr~ikV~~v~~r 358 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFEL--AGRLIKVSVVTER 358 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhcccee--cCceEEEEEeeee
Confidence 99999999999999999999999999999999998999999999999999999999999999555 6666665322110
Q ss_pred CCC-------------------------------------------------------------------CccCC-----
Q 017133 198 GSD-------------------------------------------------------------------RRTEA----- 205 (376)
Q Consensus 198 ~~~-------------------------------------------------------------------~~~~~----- 205 (376)
... .....
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 000 00000
Q ss_pred --CCCceEEECCC--CCCCc--------HHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 017133 206 --CSDLSIFVGDL--APDVT--------DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (376)
Q Consensus 206 --~~~~~l~v~nl--p~~~t--------~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g 273 (376)
.++.++.+.|+ |...| .+||.+.++ +||+|..|.+.++ +.|+.||.|.+.++|..|+.+|||
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~-k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhg 512 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECG-KHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHG 512 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHH-hcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhh
Confidence 22335555555 22222 278888995 9999988877644 238999999999999999999999
Q ss_pred ceecCcceEEeecCCCCc
Q 017133 274 VYCSSRPMRIDVATPKKA 291 (376)
Q Consensus 274 ~~~~g~~i~v~~~~~~~~ 291 (376)
+.|.|+.|.+.|-.....
T Consensus 513 rWF~gr~Ita~~~~~~~Y 530 (549)
T KOG0147|consen 513 RWFAGRMITAKYLPLERY 530 (549)
T ss_pred hhhccceeEEEEeehhhh
Confidence 999999999999865533
No 56
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=2.9e-17 Score=150.68 Aligned_cols=249 Identities=21% Similarity=0.320 Sum_probs=178.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhc-----------C-CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcC
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHT-----------G-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~-----------G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 179 (376)
....+.++|+++|..++++.+-.+|..- | .+..+.+-..+ .|+|++|.+.+.|..++ .+++
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~------nfa~ie~~s~~~at~~~-~~~~ 244 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK------NFAFIEFRSISEATEAM-ALDG 244 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc------cceeEEecCCCchhhhh-cccc
Confidence 3567789999999999999999999764 2 35566555554 59999999999999999 4677
Q ss_pred CcCCCCCCcccccccccC----------------CCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEe
Q 017133 180 SLMPNTDQPFRLNWATFS----------------GSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVII 243 (376)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~ 243 (376)
..+.+....++....... ........+...+++|++||..++++.+++++ +.||.+....+++
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell-~~fg~lk~f~lv~ 323 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELL-DSFGPLKAFRLVK 323 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHH-Hhcccchhheeec
Confidence 666433333222211110 11112334445689999999999999999999 5999999999999
Q ss_pred cCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCC
Q 017133 244 DSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDG 323 (376)
Q Consensus 244 ~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (376)
|..+|.++||||.+|.+......|+..|||..++++.|.|..+-......+.....+.. .............
T Consensus 324 d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~--------~~~~i~~~~~q~~ 395 (500)
T KOG0120|consen 324 DSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQS--------QVPGIPLLMTQMA 395 (500)
T ss_pred ccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCcccc--------ccccchhhhcccC
Confidence 99999999999999999999999999999999999999999997765443222210000 0000000111333
Q ss_pred CCCCcEEEEecC--CCCC--------CHHHHHhhhccCCCeEEEEeeCC---------CeEEEEEeecCCCC
Q 017133 324 ESNNATIFVGAL--DSDV--------SDEDLREPFSQFGEILSVKIPVG---------KGCGFVQFANRLVS 376 (376)
Q Consensus 324 ~~~~~~l~V~nl--p~~~--------t~~~L~~~F~~~G~i~~~~i~~~---------~g~afV~F~~~e~~ 376 (376)
..+..+|++.|+ |.++ ..|+|+..++.||.|.+|.|.+. .|..||+|.+.|++
T Consensus 396 g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~ 467 (500)
T KOG0120|consen 396 GIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDS 467 (500)
T ss_pred CCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHH
Confidence 445556666665 1111 13566778899999999999873 58999999998874
No 57
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=1.7e-16 Score=125.53 Aligned_cols=84 Identities=32% Similarity=0.536 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
....++|||+|||+++++++|+++|++||.|.+|.++.|+.+++++|||||+|.+.++|+.|++.|++..+ .++.++|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i--~Gr~l~V 108 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL--NGRHIRV 108 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999988 5678888
Q ss_pred cccccC
Q 017133 192 NWATFS 197 (376)
Q Consensus 192 ~~~~~~ 197 (376)
+++...
T Consensus 109 ~~a~~~ 114 (144)
T PLN03134 109 NPANDR 114 (144)
T ss_pred EeCCcC
Confidence 887644
No 58
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.70 E-value=4.2e-16 Score=125.32 Aligned_cols=162 Identities=19% Similarity=0.272 Sum_probs=124.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEee-cCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCC-CCCc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIR-NKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN-TDQP 188 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~-~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~-~~~~ 188 (376)
.....++|||++||.++...||..+|+.|-..+.+.+.. ++....++.+|||.|.+..+|..|+..|||..++- .+..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 345689999999999999999999999997776666544 33333567899999999999999999999988753 4556
Q ss_pred ccccccccCCCCCcc-----------------------------------------------------------------
Q 017133 189 FRLNWATFSGSDRRT----------------------------------------------------------------- 203 (376)
Q Consensus 189 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 203 (376)
++++.++......+.
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 666655432110000
Q ss_pred ----------------CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 017133 204 ----------------EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (376)
Q Consensus 204 ----------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 267 (376)
....+.+|||.||..+++|++|+.+|+ .|.....++|.-. .| -.+|||+|++.+.|..|
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~-~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~a 264 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLS-RYPGFHILKIRAR--GG--MPVAFADFEEIEQATDA 264 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHH-hCCCceEEEEecC--CC--cceEeecHHHHHHHHHH
Confidence 001123899999999999999999995 9998877766432 12 24899999999999999
Q ss_pred HHHhCCceec
Q 017133 268 MTEMNGVYCS 277 (376)
Q Consensus 268 l~~l~g~~~~ 277 (376)
+..|.|..|.
T Consensus 265 m~~lqg~~~s 274 (284)
T KOG1457|consen 265 MNHLQGNLLS 274 (284)
T ss_pred HHHhhcceec
Confidence 9999998773
No 59
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.5e-16 Score=129.79 Aligned_cols=84 Identities=24% Similarity=0.477 Sum_probs=80.2
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
.....+|.|.||+.+++++||+++|. +||.|.+|.+.+|+.||.++|||||+|.+.++|.+||+.|||.-++.-.|+|+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~-~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFR-PFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhh-ccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34667999999999999999999995 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 017133 285 VATPK 289 (376)
Q Consensus 285 ~~~~~ 289 (376)
|++++
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99985
No 60
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.68 E-value=4.8e-16 Score=136.65 Aligned_cols=168 Identities=20% Similarity=0.330 Sum_probs=123.2
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
..+.+||+|||+++.+.||+++|.++.|+|+.|.++.|. .++++|+|.|+|+++|.+++|++.|+...+.||+|.|+-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 345699999999999999999999899999999999995 5999999999999999999999999999999999999877
Q ss_pred CCCCcCchhhhc----------------------------------hhhh---hhhcCCC------CCC---------CC
Q 017133 287 TPKKASGYQQQY----------------------------------SSQA---LVLAGGP------GSN---------GA 314 (376)
Q Consensus 287 ~~~~~~~~~~~~----------------------------------~~~~---~~~~~~~------~~~---------~~ 314 (376)
.......+.... +..+ +....+. .++ ..
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 653221111000 0000 0000000 000 00
Q ss_pred CcCCCCC-CCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEee--C---CCeEEEEEeecCCC
Q 017133 315 RVQGSQS-DGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIP--V---GKGCGFVQFANRLV 375 (376)
Q Consensus 315 ~~~~~~~-~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~--~---~~g~afV~F~~~e~ 375 (376)
....+.. -..+....+||.||.+.+..+.|+++|.-.|.|+.+.+- + ++|+|.|+|+++-+
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpve 268 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVE 268 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHH
Confidence 0000011 123345679999999999999999999999999998764 2 67999999987643
No 61
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=1.1e-16 Score=131.46 Aligned_cols=152 Identities=19% Similarity=0.351 Sum_probs=125.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccccc
Q 017133 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (376)
Q Consensus 116 ~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~ 195 (376)
..|||++||+.+.+.+|..||..||.+.++.+.. ||+||+|.+.-+|..|+..|++..+.+.. +.++|+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~--~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGER--LVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceeccee--eeeeccc
Confidence 4799999999999999999999999998887643 68999999999999999999999996554 6777766
Q ss_pred cC------CC---------CCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCC
Q 017133 196 FS------GS---------DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD 260 (376)
Q Consensus 196 ~~------~~---------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~ 260 (376)
.. +. .........+.|.|.+++..+.+.||.+.|+ .+|.+....+ ..+++||+|..
T Consensus 72 ~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~-~~g~~~~~~~--------~~~~~~v~Fs~ 142 (216)
T KOG0106|consen 72 GKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFR-PAGEVTYVDA--------RRNFAFVEFSE 142 (216)
T ss_pred ccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhc-ccCCCchhhh--------hccccceeehh
Confidence 31 11 0112234456899999999999999999996 9999855443 23589999999
Q ss_pred HHHHHHHHHHhCCceecCcceEEeec
Q 017133 261 ENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 261 ~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
.++|.+|++.|++..+.++.|++...
T Consensus 143 ~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 143 QEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhhhhcchhccchhhcCceeeeccc
Confidence 99999999999999999999999443
No 62
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.65 E-value=2.1e-15 Score=135.01 Aligned_cols=145 Identities=18% Similarity=0.286 Sum_probs=111.2
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
.....|.+++||+++|++||+++|+ .++ |+++++.+. +|+..|.|||+|.+++++.+|++ .+...++.|.|+|--
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~-~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFS-NCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFT 82 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHh-cCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEc
Confidence 3455788999999999999999996 776 888666554 68999999999999999999996 488889999999988
Q ss_pred cCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEE-EEee----
Q 017133 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS-VKIP---- 360 (376)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~-~~i~---- 360 (376)
+..+...-..+ ........+..+|.+++||+++|++||.++|+..-.|.. +.++
T Consensus 83 ~~~~e~d~~~~---------------------~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r 141 (510)
T KOG4211|consen 83 AGGAEADWVMR---------------------PGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR 141 (510)
T ss_pred cCCcccccccc---------------------CCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC
Confidence 87654321000 000111145568999999999999999999999855555 2222
Q ss_pred -CCCeEEEEEeecCCCC
Q 017133 361 -VGKGCGFVQFANRLVS 376 (376)
Q Consensus 361 -~~~g~afV~F~~~e~~ 376 (376)
|..|.|||+|.+.|+|
T Consensus 142 gR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 142 GRPTGEAFVQFESQESA 158 (510)
T ss_pred CCcccceEEEecCHHHH
Confidence 2569999999998754
No 63
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=1.3e-15 Score=105.92 Aligned_cols=70 Identities=37% Similarity=0.780 Sum_probs=66.6
Q ss_pred EEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
|||+|||.++++++|+++|+ .||.|..+.+..+ .++..+++|||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~-~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFS-QFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHH-TTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHH-Hhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999996 9999999999998 6689999999999999999999999999999999886
No 64
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=6.2e-16 Score=113.38 Aligned_cols=82 Identities=23% Similarity=0.384 Sum_probs=78.0
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
.+++|||+||.+.++||.|.++|+ ++|+|.+|.+-.|+.+.++.|||||+|-+.++|..|++.++|..++.++|++.|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs-~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFS-KCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHH-hccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 567999999999999999999997 9999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 017133 287 TPK 289 (376)
Q Consensus 287 ~~~ 289 (376)
..-
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 543
No 65
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=3.3e-15 Score=122.09 Aligned_cols=86 Identities=29% Similarity=0.456 Sum_probs=79.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
...++..+|.|.||+.+++|++|+++|.+||.|.++.+.+|+.||.++|||||.|.+.++|.+||..|+|.-+ ...-+
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy--d~LIL 261 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY--DNLIL 261 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc--ceEEE
Confidence 3445789999999999999999999999999999999999999999999999999999999999999999887 66788
Q ss_pred cccccccC
Q 017133 190 RLNWATFS 197 (376)
Q Consensus 190 ~~~~~~~~ 197 (376)
+++|+.+.
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 99998753
No 66
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.62 E-value=7e-15 Score=118.38 Aligned_cols=169 Identities=19% Similarity=0.305 Sum_probs=115.2
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCC-CCCcceEEEEEeCCHHHHHHHHHHhCCceec---Ccc
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN-TGRTKGYGFVRFGDENERSRAMTEMNGVYCS---SRP 280 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~---g~~ 280 (376)
...-++|||.+||.++...+|..+|. .|...+.+.+..... ....+.+|||.|.+..+|.+|+..|||..++ +..
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR-~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFR-RFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhc-cCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 33457999999999999999999995 888888876654322 2345689999999999999999999999984 788
Q ss_pred eEEeecCCCCcCchhhhch-------------------hhhhhhcC---CCC------------CC--------------
Q 017133 281 MRIDVATPKKASGYQQQYS-------------------SQALVLAG---GPG------------SN-------------- 312 (376)
Q Consensus 281 i~v~~~~~~~~~~~~~~~~-------------------~~~~~~~~---~~~------------~~-------------- 312 (376)
|++++++...++...+... +....... ... .+
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 9999987654432222211 00000000 000 00
Q ss_pred -----CCCcCC-CCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeC--CCeEEEEEeecCC
Q 017133 313 -----GARVQG-SQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV--GKGCGFVQFANRL 374 (376)
Q Consensus 313 -----~~~~~~-~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~--~~g~afV~F~~~e 374 (376)
...... .......-+.+|||.||...+++|+|+.+|+.|.....++|.. .-..||++|.+.|
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~ 259 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIE 259 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHH
Confidence 000000 0001112356899999999999999999999997777777764 4468899998765
No 67
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=2.6e-15 Score=127.60 Aligned_cols=84 Identities=23% Similarity=0.430 Sum_probs=76.7
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
.....++|+|+|||+...+-||+.+| ++||.|.+|+|+.+. .-+|||+||+|++.+||++|.++|||..+.||.|+|
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF-~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEV 168 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMF-EKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEV 168 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHH-HhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEE
Confidence 34455799999999999999999999 599999999999984 568999999999999999999999999999999999
Q ss_pred eecCCCC
Q 017133 284 DVATPKK 290 (376)
Q Consensus 284 ~~~~~~~ 290 (376)
..+..+.
T Consensus 169 n~ATarV 175 (376)
T KOG0125|consen 169 NNATARV 175 (376)
T ss_pred eccchhh
Confidence 9997664
No 68
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3e-14 Score=128.62 Aligned_cols=170 Identities=19% Similarity=0.275 Sum_probs=126.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCC--Cccc---eEEEEecCHHHHHHHHHHhcC----CcC
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEG---YGFVEFYSRAAAEKVLQSYSG----SLM 182 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g--~~~g---~afV~f~~~~~a~~a~~~l~~----~~~ 182 (376)
..-++.||||+||++++|+.|...|..||.+.--+-.+....+ .++| |+|+.|+++.++...+..+.- .+|
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 3457789999999999999999999999976443332221111 3566 999999999999988876432 111
Q ss_pred CCC-----CCcccc-----cccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcce
Q 017133 183 PNT-----DQPFRL-----NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG 252 (376)
Q Consensus 183 ~~~-----~~~~~~-----~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g 252 (376)
... .+.+.+ ..+.+-. ......++.+||||++||.-++.++|..+|.+.||.|..+-|-.|+.-+.++|
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~-d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVL-DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhh-ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 111 111111 1111111 13345667899999999999999999999977999999999999988899999
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCC
Q 017133 253 YGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (376)
Q Consensus 253 ~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 290 (376)
-+-|.|.+..+..+||++ |.|.|...+..+
T Consensus 415 aGRVtFsnqqsYi~AIsa--------rFvql~h~d~~K 444 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISA--------RFVQLDHTDIDK 444 (520)
T ss_pred cceeeecccHHHHHHHhh--------heEEEeccccce
Confidence 999999999999999975 677777666544
No 69
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=6.5e-15 Score=119.94 Aligned_cols=83 Identities=28% Similarity=0.475 Sum_probs=70.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.+..-++||||+|+|.+..++|+++|++||+|++..|+.|+.+|++|||+||.|.+.++|.+|++.-+ -.+ .+|...
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piI--dGR~aN 84 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PII--DGRKAN 84 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccc--cccccc
Confidence 34456789999999999999999999999999999999999999999999999999999999997533 345 445555
Q ss_pred cccccc
Q 017133 191 LNWATF 196 (376)
Q Consensus 191 ~~~~~~ 196 (376)
++.+..
T Consensus 85 cnlA~l 90 (247)
T KOG0149|consen 85 CNLASL 90 (247)
T ss_pred cchhhh
Confidence 555554
No 70
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=7.5e-16 Score=119.99 Aligned_cols=98 Identities=22% Similarity=0.414 Sum_probs=85.5
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
...+..|||+|||+.+||.||.-+|+ .||+|+.|.+++|+.||+++||||+.|++..+...|+..|||..|.||.|+|.
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFS-qyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFS-QYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEee-ccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 34566899999999999999999997 99999999999999999999999999999999999999999999999999998
Q ss_pred ecCCCCcCchhhhchhhhh
Q 017133 285 VATPKKASGYQQQYSSQAL 303 (376)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~ 303 (376)
...........+.......
T Consensus 111 Hv~~Yk~pk~~E~~d~~t~ 129 (219)
T KOG0126|consen 111 HVSNYKKPKESEEMDAVTK 129 (219)
T ss_pred ecccccCCchhhhhhHHHH
Confidence 8766555544444443333
No 71
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=4.2e-15 Score=121.05 Aligned_cols=80 Identities=35% Similarity=0.543 Sum_probs=73.2
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
.-++|||+||++.+..|+|+++| |.||+|++..|+.|+.++++|||+||+|++.++|.+|++. -+-.|+||...|+++
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yF-eqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYF-EQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHH-HHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 34689999999999999999999 6999999999999999999999999999999999999974 346689999999888
Q ss_pred CC
Q 017133 287 TP 288 (376)
Q Consensus 287 ~~ 288 (376)
..
T Consensus 89 ~l 90 (247)
T KOG0149|consen 89 SL 90 (247)
T ss_pred hh
Confidence 66
No 72
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=1.6e-14 Score=100.27 Aligned_cols=70 Identities=29% Similarity=0.665 Sum_probs=64.5
Q ss_pred EEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
|||+|||++++++||+++|+ .||.|..+.+..++. +.++++|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~-~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFS-RFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCT-TSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999996 999999999999977 89999999999999999999999999999999875
No 73
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=2e-14 Score=132.15 Aligned_cols=178 Identities=16% Similarity=0.316 Sum_probs=134.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
......++|++||...++..+++++..||.+....++.+..+|.++||||.+|.+......|+..|||+.+.+....+..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999888544333332
Q ss_pred cccccCC---CCC--------------ccCCCCCceEEECCC--CCCCc-H-------HHHHHHHhhhCCCeeEEEEEec
Q 017133 192 NWATFSG---SDR--------------RTEACSDLSIFVGDL--APDVT-D-------SILQETFSSKYPSVKGAKVIID 244 (376)
Q Consensus 192 ~~~~~~~---~~~--------------~~~~~~~~~l~v~nl--p~~~t-~-------~~l~~~F~~~~g~i~~v~i~~~ 244 (376)
....... ... .....++.+|.+.|+ |.++. + |||+..++ .||.|..|.+.++
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~-k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECA-KFGAVRSVEIPRP 444 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhc-ccCceeEEecCCC
Confidence 2111000 000 112223344555443 11111 1 45667776 8999999999887
Q ss_pred CC---CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCC
Q 017133 245 SN---TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (376)
Q Consensus 245 ~~---~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 290 (376)
.. .....|..||+|.+.+++.+|+++|+|.++.+|.|...|....+
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDk 493 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDK 493 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHH
Confidence 22 23356889999999999999999999999999999999987643
No 74
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=1.3e-13 Score=123.48 Aligned_cols=144 Identities=28% Similarity=0.518 Sum_probs=115.0
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecC
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 287 (376)
.++|||+|||..+++++|.++|. .||.|..+.+..++.++.++|+|||+|.+.++|..|+..++|..|.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~-~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFK-KFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHH-hcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 68999999999999999999995 99999999999998889999999999999999999999999999999999999976
Q ss_pred C-CCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeC
Q 017133 288 P-KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV 361 (376)
Q Consensus 288 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~ 361 (376)
. ...+...... ......................+++.+++..++..++...|..+|.+..+.+..
T Consensus 194 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (306)
T COG0724 194 PASQPRSELSNN---------LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPP 259 (306)
T ss_pred cccccccccccc---------cchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccC
Confidence 4 1111100000 000000111223344556678899999999999999999999999997777664
No 75
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=7.3e-15 Score=107.79 Aligned_cols=82 Identities=28% Similarity=0.565 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
...+++||||||+..++|+.|.++|+.+|+|..|.+-.|+.+..+.|||||+|.+.++|..|++.+++..+ ..++|++
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL--ddr~ir~ 110 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL--DDRPIRI 110 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc--cccceee
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999 5677777
Q ss_pred cccc
Q 017133 192 NWAT 195 (376)
Q Consensus 192 ~~~~ 195 (376)
.|..
T Consensus 111 D~D~ 114 (153)
T KOG0121|consen 111 DWDA 114 (153)
T ss_pred eccc
Confidence 7653
No 76
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=8.6e-15 Score=113.60 Aligned_cols=79 Identities=24% Similarity=0.492 Sum_probs=72.6
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
-.++|||+||+..+++.||..+|+ .||.|..|+|.+++ .|||||+|++..||+.|+..|+|+.|.|..|+|+++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~-~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFS-KYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHH-hcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 357999999999999999999996 99999999998754 589999999999999999999999999999999999
Q ss_pred CCCCc
Q 017133 287 TPKKA 291 (376)
Q Consensus 287 ~~~~~ 291 (376)
.....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 76544
No 77
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.55 E-value=3.4e-14 Score=120.04 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=70.8
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecC
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 287 (376)
.++|||+||++.+++++|+++|+ .||.|.+|+|.++.. .+|||||+|.+.++|..|| .|+|..|.|+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS-~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFS-FSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence 46899999999999999999996 999999999998853 5789999999999999999 599999999999999986
Q ss_pred CC
Q 017133 288 PK 289 (376)
Q Consensus 288 ~~ 289 (376)
..
T Consensus 79 ~~ 80 (260)
T PLN03120 79 DY 80 (260)
T ss_pred CC
Confidence 54
No 78
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=2.2e-14 Score=99.67 Aligned_cols=66 Identities=38% Similarity=0.659 Sum_probs=62.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCC
Q 017133 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (376)
Q Consensus 118 v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~ 184 (376)
|||+|||+++++++|+++|+.||.|..+.+..+ .++..+++|||+|.+.++|+.|++.+++..+.+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 799999999999999999999999999999998 578999999999999999999999999988743
No 79
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.54 E-value=9.7e-14 Score=124.26 Aligned_cols=153 Identities=23% Similarity=0.357 Sum_probs=117.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccccc
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 194 (376)
.++|||+|||+++++++|+++|..||.|..+.+..++.+++++|||||+|.+.++|..|+..+++..+ .++.+++.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~--~~~~~~v~~~ 192 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL--EGRPLRVQKA 192 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE--CCceeEeecc
Confidence 69999999999999999999999999999999999988999999999999999999999999999988 5566666663
Q ss_pred c----cCCCCC---------------ccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEE
Q 017133 195 T----FSGSDR---------------RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGF 255 (376)
Q Consensus 195 ~----~~~~~~---------------~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~af 255 (376)
. ...... .........+++.+++..++..++...|. .+|.+....+.............+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 271 (306)
T COG0724 193 QPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFK-SRGDIVRASLPPSKDGKIPKSRSF 271 (306)
T ss_pred ccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcc-ccccceeeeccCCCCCcccccccc
Confidence 2 111111 12233456899999999999999999995 999997776665544333334444
Q ss_pred EEeCCHHHHHHHHHH
Q 017133 256 VRFGDENERSRAMTE 270 (376)
Q Consensus 256 V~f~~~~~A~~Al~~ 270 (376)
+.+.....+......
T Consensus 272 ~~~~~~~~~~~~~~~ 286 (306)
T COG0724 272 VGNEASKDALESNSR 286 (306)
T ss_pred cchhHHHhhhhhhcc
Confidence 444444444444433
No 80
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.5e-14 Score=118.99 Aligned_cols=143 Identities=21% Similarity=0.382 Sum_probs=112.9
Q ss_pred eEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 017133 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (376)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 289 (376)
.+||++||+.+.+.||.++| +.||.|..+.+. .||+||+|.+..+|..|+..|+++.|.+-.+.|.|+...
T Consensus 3 rv~vg~~~~~~~~~d~E~~f-~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFF-KGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHH-hhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 68999999999999999999 599999998765 258999999999999999999999999888999999875
Q ss_pred CcCchhhhchhhhhhhcCCCCCC-CCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCCCeEEEE
Q 017133 290 KASGYQQQYSSQALVLAGGPGSN-GARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFV 368 (376)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~g~afV 368 (376)
.... +.+..+ ...............+.|.|.++...+.+.+|.++|+++|.++...+ ..+++||
T Consensus 74 ~~~~-------------g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v 138 (216)
T KOG0106|consen 74 RRGR-------------GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFV 138 (216)
T ss_pred cccc-------------CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccce
Confidence 4331 000000 00011112222345678999999999999999999999999966665 5799999
Q ss_pred EeecCCCC
Q 017133 369 QFANRLVS 376 (376)
Q Consensus 369 ~F~~~e~~ 376 (376)
+|.+.+||
T Consensus 139 ~Fs~~~da 146 (216)
T KOG0106|consen 139 EFSEQEDA 146 (216)
T ss_pred eehhhhhh
Confidence 99999875
No 81
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.53 E-value=1.7e-14 Score=114.79 Aligned_cols=85 Identities=26% Similarity=0.418 Sum_probs=78.9
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
+.+...+|.|-||.+.++.++|+.+| ++||.|-+|.|.+|..|+.++|||||.|.+..+|+.|++.|+|..|+|+.|+|
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvF-ekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVF-EKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHH-HHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34455689999999999999999999 59999999999999999999999999999999999999999999999999999
Q ss_pred eecCCC
Q 017133 284 DVATPK 289 (376)
Q Consensus 284 ~~~~~~ 289 (376)
.+++-.
T Consensus 88 q~aryg 93 (256)
T KOG4207|consen 88 QMARYG 93 (256)
T ss_pred hhhhcC
Confidence 887643
No 82
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.53 E-value=6.4e-14 Score=121.46 Aligned_cols=171 Identities=13% Similarity=0.178 Sum_probs=126.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHh---c-CCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSH---T-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~---~-G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 188 (376)
..--.|.+++||+++++.++.+||.. . |..+.+.+++.. +|+..|-|||.|..+++|..|+.+.... + ..+.
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~-i--GqRY 234 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQN-I--GQRY 234 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHH-H--hHHH
Confidence 34557889999999999999999952 2 355677676655 7999999999999999999999753322 1 1222
Q ss_pred ccccccccC-----------------------C---CCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCC-eeE--E
Q 017133 189 FRLNWATFS-----------------------G---SDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKG--A 239 (376)
Q Consensus 189 ~~~~~~~~~-----------------------~---~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~-i~~--v 239 (376)
|.+-.+... . ...........+|.+++||+..+.+||.++|. .|-. |.. |
T Consensus 235 IElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flg-dFa~~i~f~gV 313 (508)
T KOG1365|consen 235 IELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLG-DFATDIRFQGV 313 (508)
T ss_pred HHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHH-HHhhhccccee
Confidence 222111100 0 00001222356899999999999999999995 5544 333 6
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 017133 240 KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (376)
Q Consensus 240 ~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 289 (376)
.+..+ ..|++.|.|||+|.+.++|.+|...+|++...+|.|+|--+...
T Consensus 314 Hmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 314 HMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred EEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 66666 45999999999999999999999999999999999999877543
No 83
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=7.9e-14 Score=98.41 Aligned_cols=83 Identities=17% Similarity=0.318 Sum_probs=74.7
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
....++.|||+|||+++|.|++.++|. +||.|..|+|-.. ...+|.|||-|++..+|.+|++.|+|..+.++.+.|
T Consensus 14 ppevnriLyirNLp~~ITseemydlFG-kyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFG-KYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhh-cccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 344567999999999999999999997 9999999998755 445899999999999999999999999999999999
Q ss_pred eecCCCC
Q 017133 284 DVATPKK 290 (376)
Q Consensus 284 ~~~~~~~ 290 (376)
.|..+..
T Consensus 90 lyyq~~~ 96 (124)
T KOG0114|consen 90 LYYQPED 96 (124)
T ss_pred EecCHHH
Confidence 9998754
No 84
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=9.9e-14 Score=118.10 Aligned_cols=104 Identities=21% Similarity=0.348 Sum_probs=84.5
Q ss_pred CCCCCCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCC
Q 017133 106 SNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (376)
Q Consensus 106 ~~~~~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 185 (376)
+.+....+..++|+|+|||+..-|-||+.+|.+||.|.+|.|+.+ ...+|||+||.|++.++|++|.++|+|..+ .
T Consensus 87 st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~V--E 162 (376)
T KOG0125|consen 87 STNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVV--E 162 (376)
T ss_pred CCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhccee--e
Confidence 334455677899999999999999999999999999999999986 457999999999999999999999999999 5
Q ss_pred CCcccccccccCCCCCccCCCCCceEEE
Q 017133 186 DQPFRLNWATFSGSDRRTEACSDLSIFV 213 (376)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v 213 (376)
+|.|.|+.+...-..++....+....++
T Consensus 163 GRkIEVn~ATarV~n~K~~v~p~~~g~~ 190 (376)
T KOG0125|consen 163 GRKIEVNNATARVHNKKKKVLPYPNGWK 190 (376)
T ss_pred ceEEEEeccchhhccCCcccCCCccccc
Confidence 6777777777655444444444433333
No 85
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=8e-14 Score=117.21 Aligned_cols=87 Identities=26% Similarity=0.513 Sum_probs=81.0
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
.++-+||||+-|+++++|.+|++.|+ .||.|+.|.|++|..||+++|||||+|+++.+..+|.+..+|..|+|+.|.|.
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~-~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFE-KYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHH-hcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 36778999999999999999999995 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
+-......
T Consensus 177 vERgRTvk 184 (335)
T KOG0113|consen 177 VERGRTVK 184 (335)
T ss_pred eccccccc
Confidence 87665443
No 86
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=2.1e-14 Score=115.25 Aligned_cols=85 Identities=27% Similarity=0.597 Sum_probs=80.8
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
..++|||++|...+++.-|...|- +||+|..|.+..|..+.+.+||+||+|+-.|||.+||..||+.+|.||.|+|.++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFI-PFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFI-PFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccc-cccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 457999999999999999999995 9999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcC
Q 017133 287 TPKKAS 292 (376)
Q Consensus 287 ~~~~~~ 292 (376)
++.+.+
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 987654
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=3.1e-13 Score=100.19 Aligned_cols=86 Identities=23% Similarity=0.414 Sum_probs=80.0
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
......|||+++....+++||.+.|+ .||+|+.+.+..|+.||..||||+|+|++.+.|.+|+..|||..|.|..|.|.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~-dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFA-DYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHh-hcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 34567899999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 017133 285 VATPKKA 291 (376)
Q Consensus 285 ~~~~~~~ 291 (376)
|+-.+..
T Consensus 148 w~Fv~gp 154 (170)
T KOG0130|consen 148 WCFVKGP 154 (170)
T ss_pred EEEecCC
Confidence 9965543
No 88
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.45 E-value=2.2e-13 Score=94.55 Aligned_cols=66 Identities=38% Similarity=0.591 Sum_probs=59.9
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCC
Q 017133 118 IWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (376)
Q Consensus 118 v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~ 184 (376)
|||+|||+++++++|+++|+.||.|..+.+..++. +.++++|||+|.+.++|..|++.+++..+.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g 66 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDG 66 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECC
Confidence 79999999999999999999999999999999986 9999999999999999999999988777743
No 89
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=7.8e-13 Score=91.95 Aligned_cols=72 Identities=39% Similarity=0.814 Sum_probs=66.8
Q ss_pred eEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
+|+|+|||..+++++|+++|. .||.|..+.+..+. +.++|+|||+|.+.++|..|++.+++..+.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~-~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFS-KFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHH-hcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999995 99999999988775 6788999999999999999999999999999998874
No 90
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=6.9e-13 Score=110.25 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=70.8
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
...+|||+||++.+|++||+++|+ .||.|.+|+|.++ +..+++|||+|.+.++|..|+ .|+|..|.++.|.|..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS-~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFS-HCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHH-hcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 346999999999999999999997 9999999999988 355689999999999999999 79999999999999887
Q ss_pred CCC
Q 017133 287 TPK 289 (376)
Q Consensus 287 ~~~ 289 (376)
...
T Consensus 79 ~~y 81 (243)
T PLN03121 79 GQY 81 (243)
T ss_pred ccc
Confidence 653
No 91
>PLN03213 repressor of silencing 3; Provisional
Probab=99.44 E-value=4.4e-13 Score=120.02 Aligned_cols=83 Identities=18% Similarity=0.362 Sum_probs=74.3
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCH--HHHHHHHHHhCCceecCcceEE
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE--NERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~--~~A~~Al~~l~g~~~~g~~i~v 283 (376)
....+||||||++.++++||+..|+ .||.|.+|.|++ .+| ||||||+|.+. .++.+||..|||..+.||.|+|
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFS-eFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFS-PMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 3457999999999999999999996 999999999994 456 89999999987 7899999999999999999999
Q ss_pred eecCCCCcCc
Q 017133 284 DVATPKKASG 293 (376)
Q Consensus 284 ~~~~~~~~~~ 293 (376)
..+++.-...
T Consensus 83 NKAKP~YLeR 92 (759)
T PLN03213 83 EKAKEHYLAR 92 (759)
T ss_pred eeccHHHHHH
Confidence 9998865443
No 92
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.44 E-value=1.2e-12 Score=110.81 Aligned_cols=75 Identities=21% Similarity=0.316 Sum_probs=67.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccccc
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 194 (376)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.++. ++|||||+|.+.++|..|+ .|+|..+ .++.|++.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l--~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATI--VDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCee--CCceEEEEec
Confidence 67999999999999999999999999999999998863 5689999999999999999 5999998 6677888776
Q ss_pred c
Q 017133 195 T 195 (376)
Q Consensus 195 ~ 195 (376)
.
T Consensus 78 ~ 78 (260)
T PLN03120 78 E 78 (260)
T ss_pred c
Confidence 4
No 93
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.6e-13 Score=105.47 Aligned_cols=77 Identities=26% Similarity=0.402 Sum_probs=68.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
.-.++||||||+..+++.||...|..||+|.+|||-..+ .|||||+|+++.+|+.|+..|+|..+ ++..++|+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~--cG~r~rVE 80 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDI--CGSRIRVE 80 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccc--cCceEEEE
Confidence 447899999999999999999999999999999997754 48999999999999999999999999 55666666
Q ss_pred cccc
Q 017133 193 WATF 196 (376)
Q Consensus 193 ~~~~ 196 (376)
.+.-
T Consensus 81 ~S~G 84 (195)
T KOG0107|consen 81 LSTG 84 (195)
T ss_pred eecC
Confidence 6553
No 94
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.43 E-value=1.5e-12 Score=111.87 Aligned_cols=169 Identities=18% Similarity=0.216 Sum_probs=119.9
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~ 276 (376)
...++.|||.|||.++|.+++.++|+ +||.|.+ |++.++.. |..+|-|++.|-..++...|+..|++..|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~s-KcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMS-KCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHH-hcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 34456799999999999999999997 9998764 78888855 99999999999999999999999999999
Q ss_pred cCcceEEeecCCCCcCchhh-------hchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCC--C--CC-----
Q 017133 277 SSRPMRIDVATPKKASGYQQ-------QYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDS--D--VS----- 340 (376)
Q Consensus 277 ~g~~i~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~--~--~t----- 340 (376)
.|+.|+|..++......+.. ....+................ .........++|.|.||=. . .+
T Consensus 209 rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~ 287 (382)
T KOG1548|consen 209 RGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLN 287 (382)
T ss_pred cCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHH
Confidence 99999999886432111000 000000000000001111111 1223334567889998822 1 22
Q ss_pred --HHHHHhhhccCCCeEEEEeeC--CCeEEEEEeecCCCC
Q 017133 341 --DEDLREPFSQFGEILSVKIPV--GKGCGFVQFANRLVS 376 (376)
Q Consensus 341 --~~~L~~~F~~~G~i~~~~i~~--~~g~afV~F~~~e~~ 376 (376)
.++|++-++.||.|.+|.|.- ..|.+-|.|.|.++|
T Consensus 288 dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA 327 (382)
T KOG1548|consen 288 DLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEA 327 (382)
T ss_pred HHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHH
Confidence 577888899999999999973 569999999999875
No 95
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.43 E-value=6.3e-13 Score=121.86 Aligned_cols=83 Identities=31% Similarity=0.587 Sum_probs=79.5
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 288 (376)
+.|||+|+|+++++++|.++|+ ..|.|..++++.|+.+|+++||+|++|.+.++|.+|++.|||.++.||.|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~-~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFS-GVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHh-ccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 7899999999999999999996 999999999999999999999999999999999999999999999999999999987
Q ss_pred CCcC
Q 017133 289 KKAS 292 (376)
Q Consensus 289 ~~~~ 292 (376)
...+
T Consensus 98 ~~~~ 101 (435)
T KOG0108|consen 98 RKNA 101 (435)
T ss_pred cchh
Confidence 6554
No 96
>smart00360 RRM RNA recognition motif.
Probab=99.42 E-value=1.2e-12 Score=90.61 Aligned_cols=71 Identities=37% Similarity=0.780 Sum_probs=66.5
Q ss_pred ECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 213 VGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 213 v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
|+|||..+++++|+++|. .||.|..+.+..++.++.++|+|||+|.+.++|..|++.|++..++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~-~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFS-KFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHH-hhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999995 99999999999988788999999999999999999999999999999998874
No 97
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=1.6e-14 Score=112.60 Aligned_cols=79 Identities=24% Similarity=0.479 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
.++.-|||||||++.||.||.-.|++||.|++|.+++|+.||+++||||+.|++-.+...|+..|||..+ .++.|+|.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki--~gRtirVD 110 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI--LGRTIRVD 110 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee--cceeEEee
Confidence 4678899999999999999999999999999999999999999999999999999999999999999988 66777775
Q ss_pred c
Q 017133 193 W 193 (376)
Q Consensus 193 ~ 193 (376)
.
T Consensus 111 H 111 (219)
T KOG0126|consen 111 H 111 (219)
T ss_pred e
Confidence 4
No 98
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=1.3e-12 Score=110.09 Aligned_cols=87 Identities=22% Similarity=0.368 Sum_probs=77.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCc
Q 017133 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (376)
Q Consensus 109 ~~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 188 (376)
....++-+||||+-|+++++|..|+..|+.||+|+.|+|++|+.||+++|||||+|+++.+...|.+..+|..|++....
T Consensus 95 ~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 95 NAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred cccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 34457789999999999999999999999999999999999999999999999999999999999999999999666555
Q ss_pred ccccccc
Q 017133 189 FRLNWAT 195 (376)
Q Consensus 189 ~~~~~~~ 195 (376)
|-++...
T Consensus 175 VDvERgR 181 (335)
T KOG0113|consen 175 VDVERGR 181 (335)
T ss_pred EEecccc
Confidence 5554443
No 99
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.39 E-value=5.9e-13 Score=106.14 Aligned_cols=84 Identities=24% Similarity=0.429 Sum_probs=76.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
+.+....|.|-||.+.++.++|+.+|++||.|.+|.|.+|+.|+.++|||||.|.+..+|+.|++.|+|.++ .++.++
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~l--dgRelr 86 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVL--DGRELR 86 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceee--ccceee
Confidence 456788999999999999999999999999999999999999999999999999999999999999999999 456666
Q ss_pred cccccc
Q 017133 191 LNWATF 196 (376)
Q Consensus 191 ~~~~~~ 196 (376)
|..+..
T Consensus 87 Vq~ary 92 (256)
T KOG4207|consen 87 VQMARY 92 (256)
T ss_pred ehhhhc
Confidence 666554
No 100
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.36 E-value=7.2e-12 Score=87.49 Aligned_cols=74 Identities=39% Similarity=0.809 Sum_probs=68.3
Q ss_pred eEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
+|+|+|||..+++++|+++|. .||.|..+.+..+..+ .++|+|||+|.+.++|..|++.+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~-~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFS-KFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHH-hcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999995 9999999999988654 7789999999999999999999999999999999875
No 101
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.35 E-value=1.1e-12 Score=108.03 Aligned_cols=173 Identities=31% Similarity=0.432 Sum_probs=134.6
Q ss_pred CCCceEEEcCCCCCCCHHH-H--HHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 113 DETKTIWIGDLFHWMDETF-L--HNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~-l--~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......+++++-.++..+- | ...|..+-.+...+++++. .+.-++++|+.|...+.-.++-..-+++.+ ...+|
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki--~~~~V 170 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKI--GKPPV 170 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccc--cCcce
Confidence 3445566777666665554 3 6778888788888888886 578889999999987776666655555555 33445
Q ss_pred cccccccCCC-CCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 017133 190 RLNWATFSGS-DRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (376)
Q Consensus 190 ~~~~~~~~~~-~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al 268 (376)
|+.....-.. ....+...+.+||.+.|..+++++.|.+.| ++|......++++|+.||+++||+||.|.+..|+..|+
T Consensus 171 R~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf-~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAm 249 (290)
T KOG0226|consen 171 RLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAF-KKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAM 249 (290)
T ss_pred eeccccccCCcccccCccccceeecccccccccHHHHHHHH-HhccchhhccccccccccccccceeeeecCHHHHHHHH
Confidence 5543332211 222455667899999999999999999999 49999999999999999999999999999999999999
Q ss_pred HHhCCceecCcceEEeecCCC
Q 017133 269 TEMNGVYCSSRPMRIDVATPK 289 (376)
Q Consensus 269 ~~l~g~~~~g~~i~v~~~~~~ 289 (376)
++|+|+.++.|+|+++-+.-+
T Consensus 250 rem~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 250 REMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred HhhcccccccchhHhhhhhHH
Confidence 999999999999998766443
No 102
>PLN03213 repressor of silencing 3; Provisional
Probab=99.34 E-value=3.5e-12 Score=114.37 Aligned_cols=77 Identities=22% Similarity=0.403 Sum_probs=68.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCH--HHHHHHHHHhcCCcCCCCCCccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSR--AAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~--~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
....+||||||++++++++|+.+|..||.|.+|.|++ .+| ||||||+|.+. .++.+||..|+|..+ .++.|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEW--KGR~LK 81 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVW--KGGRLR 81 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCee--cCceeE
Confidence 4567999999999999999999999999999999994 467 89999999987 789999999999999 667777
Q ss_pred ccccc
Q 017133 191 LNWAT 195 (376)
Q Consensus 191 ~~~~~ 195 (376)
|+.+.
T Consensus 82 VNKAK 86 (759)
T PLN03213 82 LEKAK 86 (759)
T ss_pred Eeecc
Confidence 76664
No 103
>smart00361 RRM_1 RNA recognition motif.
Probab=99.34 E-value=6.3e-12 Score=86.78 Aligned_cols=62 Identities=23% Similarity=0.496 Sum_probs=55.0
Q ss_pred HHHHHHHHhh----hCCCeeEEE-EEecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 222 DSILQETFSS----KYPSVKGAK-VIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 222 ~~~l~~~F~~----~~g~i~~v~-i~~~~~~--~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
++||+++| + .||.|.++. +..++.+ +.++|++||+|.+.++|.+|++.|||+.+.|+.|++.
T Consensus 2 ~~~l~~~~-~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREF-SEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHH-HHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 56778777 5 899999995 7777666 8899999999999999999999999999999999863
No 104
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.34 E-value=5.1e-12 Score=105.11 Aligned_cols=75 Identities=24% Similarity=0.264 Sum_probs=65.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
...+|||+||++.+++++|++||+.||.|.+|+|++|. .++++|||+|+++++++.|+ .|+|..+ .+++|.+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l--~d~~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATI--VDQRVCITR 77 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCee--CCceEEEEe
Confidence 46899999999999999999999999999999999984 45689999999999999999 7999988 445566654
Q ss_pred c
Q 017133 194 A 194 (376)
Q Consensus 194 ~ 194 (376)
.
T Consensus 78 ~ 78 (243)
T PLN03121 78 W 78 (243)
T ss_pred C
Confidence 3
No 105
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=6.4e-12 Score=88.88 Aligned_cols=78 Identities=15% Similarity=0.268 Sum_probs=67.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
.++..++-|||+|||+++|.+++.++|.+||.|..|+|-..+ ..+|.|||.|++..+|++|++.|+|..+ .++.+
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~--~~ryl 87 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNV--DNRYL 87 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhccccc--CCceE
Confidence 455778899999999999999999999999999999887654 4689999999999999999999999888 44444
Q ss_pred ccc
Q 017133 190 RLN 192 (376)
Q Consensus 190 ~~~ 192 (376)
.+-
T Consensus 88 ~vl 90 (124)
T KOG0114|consen 88 VVL 90 (124)
T ss_pred EEE
Confidence 443
No 106
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.32 E-value=8.6e-12 Score=82.14 Aligned_cols=56 Identities=30% Similarity=0.629 Sum_probs=50.4
Q ss_pred HHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 225 LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 225 l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
|+++|+ +||.|.++.+..+. +++|||+|.+.++|..|++.|||..+.|+.|+|.|+
T Consensus 1 L~~~f~-~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFS-KFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHT-TTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhC-CcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 678995 99999999987653 579999999999999999999999999999999986
No 107
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.30 E-value=4.8e-12 Score=116.12 Aligned_cols=80 Identities=25% Similarity=0.554 Sum_probs=76.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccccc
Q 017133 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (376)
Q Consensus 116 ~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~ 195 (376)
+.|||||||+++++++|.++|+..|.|.+++++.|+.+|+++||+|++|.+.+++..|++.|++..+ .++.+++.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~--~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF--NGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc--CCceEEeeccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999998 77889988876
Q ss_pred cC
Q 017133 196 FS 197 (376)
Q Consensus 196 ~~ 197 (376)
..
T Consensus 97 ~~ 98 (435)
T KOG0108|consen 97 NR 98 (435)
T ss_pred cc
Confidence 44
No 108
>smart00362 RRM_2 RNA recognition motif.
Probab=99.30 E-value=1.4e-11 Score=85.43 Aligned_cols=65 Identities=34% Similarity=0.589 Sum_probs=60.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCC
Q 017133 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (376)
Q Consensus 117 ~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 183 (376)
+|+|+|||..+++++|+++|..||.+..+.+..++ +.++++|||+|.+.++|..|++.+++..+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~ 65 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLG 65 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEEC
Confidence 58999999999999999999999999999998876 778899999999999999999999987773
No 109
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=6.7e-12 Score=93.17 Aligned_cols=84 Identities=21% Similarity=0.439 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
-+.-.|||.++...++|++|.+.|..||+|+++.+..|+.+|-.||||+|+|++.+.|.+|+..+|+..+ .+..+.+.
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~l--l~q~v~VD 147 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAEL--LGQNVSVD 147 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhh--hCCceeEE
Confidence 4566799999999999999999999999999999999999999999999999999999999999999988 67788888
Q ss_pred ccccCC
Q 017133 193 WATFSG 198 (376)
Q Consensus 193 ~~~~~~ 198 (376)
|+....
T Consensus 148 w~Fv~g 153 (170)
T KOG0130|consen 148 WCFVKG 153 (170)
T ss_pred EEEecC
Confidence 875443
No 110
>smart00360 RRM RNA recognition motif.
Probab=99.28 E-value=1.9e-11 Score=84.50 Aligned_cols=64 Identities=38% Similarity=0.629 Sum_probs=60.2
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCC
Q 017133 120 IGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (376)
Q Consensus 120 v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 183 (376)
|+|||+.+++++|+++|..||.|..+.+..++.++.++|+|||+|.+.++|..|++.+++..+.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~ 64 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD 64 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC
Confidence 6899999999999999999999999999998878999999999999999999999999987773
No 111
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.21 E-value=2.7e-11 Score=106.35 Aligned_cols=178 Identities=21% Similarity=0.307 Sum_probs=141.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...+++|++++.+.+.+.++..++..+|...............++|++++.|...+.+..++.........+.....-+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46789999999999999999999999998888888877778899999999999999999999754433443222222222
Q ss_pred ccccC---CCCCccCCCCCceEE-ECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 017133 193 WATFS---GSDRRTEACSDLSIF-VGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (376)
Q Consensus 193 ~~~~~---~~~~~~~~~~~~~l~-v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al 268 (376)
..... ............+++ |++|++++++++|...|. .+|.|..+++..+..++.++|++||.|.+..++..++
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~-~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~ 244 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFV-SSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLAL 244 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhcc-CcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHh
Confidence 21110 011112222333444 999999999999999996 9999999999999999999999999999999999999
Q ss_pred HHhCCceecCcceEEeecCCCCcC
Q 017133 269 TEMNGVYCSSRPMRIDVATPKKAS 292 (376)
Q Consensus 269 ~~l~g~~~~g~~i~v~~~~~~~~~ 292 (376)
.. ....+.++++.+.+..+....
T Consensus 245 ~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 245 ND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hc-ccCcccCcccccccCCCCccc
Confidence 77 889999999999999886443
No 112
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.20 E-value=1.2e-10 Score=81.29 Aligned_cols=66 Identities=36% Similarity=0.613 Sum_probs=60.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCC
Q 017133 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (376)
Q Consensus 117 ~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 183 (376)
+|+|+|||+++++++|+++|..+|.|..+.+..++.+ ..+++|||+|.+.++|..|++.+++..+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~ 66 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELG 66 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 5899999999999999999999999999999988744 77899999999999999999999998763
No 113
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.4e-11 Score=99.23 Aligned_cols=84 Identities=23% Similarity=0.445 Sum_probs=78.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++||||+|..+++|.-|...|-+||.|++|.+..|-.+++.+||+||+|.-.|+|..||..+|+..+ .++.|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL--~GrtirVN 85 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESEL--FGRTIRVN 85 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhh--cceeEEEe
Confidence 4578999999999999999999999999999999999999999999999999999999999999999998 77889999
Q ss_pred ccccCC
Q 017133 193 WATFSG 198 (376)
Q Consensus 193 ~~~~~~ 198 (376)
++.+..
T Consensus 86 ~AkP~k 91 (298)
T KOG0111|consen 86 LAKPEK 91 (298)
T ss_pred ecCCcc
Confidence 887543
No 114
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.18 E-value=3.9e-11 Score=115.14 Aligned_cols=165 Identities=20% Similarity=0.349 Sum_probs=138.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
....+++||+|||+..+++.+|+..|..+|.|.+|.|-+-. -+.-..|+||.|.+.+.+-.|.-.+.+..+......+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 34578899999999999999999999999999999886653 34555699999999999999999999988866555544
Q ss_pred ccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 017133 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (376)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ 270 (376)
+... ....++.+++++|..++....|...| ..||.|..|.+-+. ..||||.|++...|..|+..
T Consensus 447 lG~~---------kst~ttr~~sgglg~w~p~~~l~r~f-d~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 447 LGQP---------KSTPTTRLQSGGLGPWSPVSRLNREF-DRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHD 510 (975)
T ss_pred cccc---------ccccceeeccCCCCCCChHHHHHHHh-hccCcceeeecccC------CcceeeecccCccchhhHHH
Confidence 4321 23466789999999999999999999 59999998876543 24999999999999999999
Q ss_pred hCCceecC--cceEEeecCCCCcC
Q 017133 271 MNGVYCSS--RPMRIDVATPKKAS 292 (376)
Q Consensus 271 l~g~~~~g--~~i~v~~~~~~~~~ 292 (376)
|.|..|++ +.|+|.|+.+....
T Consensus 511 ~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HhcCcCCCCCcccccccccCCCCC
Confidence 99999976 77999999876544
No 115
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7.3e-11 Score=101.74 Aligned_cols=87 Identities=25% Similarity=0.426 Sum_probs=80.8
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
...+.+.|||--|.+-++++||.-+|+ .||.|..|.|++|..||.+.-||||+|++.+++++|.-+|++..|+.+.|+|
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFS-rFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHV 313 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFS-RFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHV 313 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHh-hcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEe
Confidence 345678999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCc
Q 017133 284 DVATPKKA 291 (376)
Q Consensus 284 ~~~~~~~~ 291 (376)
.|+..-..
T Consensus 314 DFSQSVsk 321 (479)
T KOG0415|consen 314 DFSQSVSK 321 (479)
T ss_pred ehhhhhhh
Confidence 99865443
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=7.7e-10 Score=100.53 Aligned_cols=154 Identities=24% Similarity=0.330 Sum_probs=104.4
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecC-C--CCCcce---EEEEEeCCHHHHHHHHHHhCCceecC
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS-N--TGRTKG---YGFVRFGDENERSRAMTEMNGVYCSS 278 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~-~--~~~~~g---~afV~f~~~~~A~~Al~~l~g~~~~g 278 (376)
..-+++|||++||++++|+.|...|. .||.+. |...... . .-.++| |+|+-|+++.+....|.++.- .-..
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~-~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~ 332 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFG-QFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGN 332 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcc-cccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccc
Confidence 33467999999999999999999995 999865 4433211 1 112466 999999999999988887654 1122
Q ss_pred cceEEeecCCCCcC--chhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhc-cCCCeE
Q 017133 279 RPMRIDVATPKKAS--GYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFS-QFGEIL 355 (376)
Q Consensus 279 ~~i~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~-~~G~i~ 355 (376)
-.+.|.--..+... ...+...+.. .....+....+.+||||++||--++.++|-.+|+ -||.|.
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~-------------fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~ 399 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSD-------------FVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVL 399 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccch-------------hhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceE
Confidence 22333322222111 0111111110 1111345566789999999999999999999999 599999
Q ss_pred EEEeeCC------CeEEEEEeecCC
Q 017133 356 SVKIPVG------KGCGFVQFANRL 374 (376)
Q Consensus 356 ~~~i~~~------~g~afV~F~~~e 374 (376)
.+-|..+ +|-|-|+|.+..
T Consensus 400 yaGIDtD~k~KYPkGaGRVtFsnqq 424 (520)
T KOG0129|consen 400 YVGIDTDPKLKYPKGAGRVTFSNQQ 424 (520)
T ss_pred EEEeccCcccCCCCCcceeeecccH
Confidence 9988754 699999998754
No 117
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=5.8e-12 Score=120.16 Aligned_cols=152 Identities=20% Similarity=0.283 Sum_probs=133.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
...++||+||+..+.+.+|...|..+|.+..+.+...++.++.+|+|||+|..++++.+|+....+..+.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 4567999999999999999999999998888888767778999999999999999999999876666552
Q ss_pred cccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 017133 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (376)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g 273 (376)
...|+|+|+|+..|.++|+.+++ .+|.+..++++..+ .|+++|.|||.|.+..++.++....++
T Consensus 736 --------------K~~v~i~g~pf~gt~e~~k~l~~-~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~ 799 (881)
T KOG0128|consen 736 --------------KISVAISGPPFQGTKEELKSLAS-KTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDV 799 (881)
T ss_pred --------------hhhhheeCCCCCCchHHHHhhcc-ccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchh
Confidence 23689999999999999999995 99999999877774 499999999999999999999988888
Q ss_pred ceecCcceEEeecCCCCc
Q 017133 274 VYCSSRPMRIDVATPKKA 291 (376)
Q Consensus 274 ~~~~g~~i~v~~~~~~~~ 291 (376)
..+..+.+.|..+++...
T Consensus 800 ~~~rE~~~~v~vsnp~~~ 817 (881)
T KOG0128|consen 800 AGKRENNGEVQVSNPERD 817 (881)
T ss_pred hhhhhcCccccccCCccc
Confidence 888888888888777433
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.08 E-value=2.4e-10 Score=108.14 Aligned_cols=78 Identities=18% Similarity=0.420 Sum_probs=72.6
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecC
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 287 (376)
++||||++|+.++++.||..+| +.||.|.+|.++.. +|||||.+....+|.+|+.+|++..+.++.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~f-eefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLF-EEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHH-HhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 5799999999999999999999 69999999988644 6799999999999999999999999999999999998
Q ss_pred CCCcC
Q 017133 288 PKKAS 292 (376)
Q Consensus 288 ~~~~~ 292 (376)
.+..+
T Consensus 494 g~G~k 498 (894)
T KOG0132|consen 494 GKGPK 498 (894)
T ss_pred cCCcc
Confidence 88665
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.08 E-value=1.4e-09 Score=101.61 Aligned_cols=164 Identities=11% Similarity=0.016 Sum_probs=108.5
Q ss_pred eEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 017133 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (376)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 289 (376)
.+-+.+.+++.++.|++++|- --.|..+.|.++...+...|.++|.|....++.+|+.. +...+-.|.+.+......
T Consensus 313 y~~~~gm~fn~~~nd~rkfF~--g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~ 389 (944)
T KOG4307|consen 313 YNNYKGMEFNNDFNDGRKFFP--GRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNL 389 (944)
T ss_pred eeeecccccccccchhhhhcC--cccccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcc
Confidence 466678999999999999994 34466777777766555689999999999999999853 556666788888766544
Q ss_pred CcCchhhhchhhh---hhhcCCCCCCC----CCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEE-EEeeC
Q 017133 290 KASGYQQQYSSQA---LVLAGGPGSNG----ARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILS-VKIPV 361 (376)
Q Consensus 290 ~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~-~~i~~ 361 (376)
....-.....-.. .....+..... ............-+.+|||..||..+++.++.++|...-.|++ |.|-+
T Consensus 390 ~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~ 469 (944)
T KOG4307|consen 390 GRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTR 469 (944)
T ss_pred ccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEecc
Confidence 3221111111110 00000000000 0111112233455789999999999999999999999777777 66644
Q ss_pred -----CCeEEEEEeecCCCC
Q 017133 362 -----GKGCGFVQFANRLVS 376 (376)
Q Consensus 362 -----~~g~afV~F~~~e~~ 376 (376)
-++.|||.|.+++++
T Consensus 470 ~P~~~~~~~afv~F~~~~a~ 489 (944)
T KOG4307|consen 470 LPTDLLRPAAFVAFIHPTAP 489 (944)
T ss_pred CCcccccchhhheecccccc
Confidence 358999999987653
No 120
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=3.5e-11 Score=97.02 Aligned_cols=143 Identities=20% Similarity=0.370 Sum_probs=118.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
..+..++|||+|+...++|+-|.++|-..|+|..+.|..++ .+..| ||||.|+++-++..|++.+||..+.+ .++.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~--~e~q 80 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEE--DEEQ 80 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhcc--chhh
Confidence 34678999999999999999999999999999999888876 56677 99999999999999999999988743 3333
Q ss_pred ccccccCCCCCccCCCCCceEEECC----CCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 017133 191 LNWATFSGSDRRTEACSDLSIFVGD----LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (376)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~n----lp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 266 (376)
+ +++-++ |...++++.+.+.|+ .-|.++.+++..+.. ++++.+.|+.+......-.
T Consensus 81 ~------------------~~r~G~shapld~r~~~ei~~~v~s-~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~ 140 (267)
T KOG4454|consen 81 R------------------TLRCGNSHAPLDERVTEEILYEVFS-QAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPF 140 (267)
T ss_pred c------------------ccccCCCcchhhhhcchhhheeeec-ccCCCCCcccccccc-CCccCccchhhhhhhcCcH
Confidence 3 445555 777889999999997 999999999988855 8889999999888887777
Q ss_pred HHHHhCCceec
Q 017133 267 AMTEMNGVYCS 277 (376)
Q Consensus 267 Al~~l~g~~~~ 277 (376)
++....+..+.
T Consensus 141 ~~~~y~~l~~~ 151 (267)
T KOG4454|consen 141 ALDLYQGLELF 151 (267)
T ss_pred HhhhhcccCcC
Confidence 87766654443
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.07 E-value=6.3e-10 Score=89.37 Aligned_cols=85 Identities=21% Similarity=0.358 Sum_probs=77.4
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhC-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKY-PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~-g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
.......++|..+|..+.+.++..+|. .| |.|.++++.+++.||.++|||||+|++.+.|.-|-+.||+..|.++.|.
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~-q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFR-QFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhh-hcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344556899999999999999999996 66 7788888889999999999999999999999999999999999999999
Q ss_pred EeecCCC
Q 017133 283 IDVATPK 289 (376)
Q Consensus 283 v~~~~~~ 289 (376)
|++..+.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9999887
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=1.7e-11 Score=117.00 Aligned_cols=210 Identities=16% Similarity=0.235 Sum_probs=153.9
Q ss_pred CCceEEEcCCCCCCCHH-HHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 114 ETKTIWIGDLFHWMDET-FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~-~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
......+.++.+..... ..+..|..+|.|+.+++......-..-.+.++.+....+++.+... .+..+.+. ...+.
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p-a~~~~a~~--~~av~ 646 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP-AGGALANR--SAAVG 646 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccc-cccccCCc--cccCC
Confidence 34456677777666655 6788999999999998876332222223888999999999888854 44444222 23333
Q ss_pred ccccCCCCCccCC-----CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Q 017133 193 WATFSGSDRRTEA-----CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRA 267 (376)
Q Consensus 193 ~~~~~~~~~~~~~-----~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 267 (376)
.+........... ....++||+||+..+.++||...|+ .+|.+..+.+..-...++.+|+|||.|...+++.+|
T Consensus 647 ~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~-~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aa 725 (881)
T KOG0128|consen 647 LADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFS-PSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAA 725 (881)
T ss_pred CCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcC-ccchhhhHHHHHHhhccccccceeeEeecCCchhhh
Confidence 3322221111111 1235799999999999999999997 999888877765556789999999999999999999
Q ss_pred HHHhCCceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhh
Q 017133 268 MTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREP 347 (376)
Q Consensus 268 l~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~ 347 (376)
+....+..++ ...|+|.|.|+.-|.++|+.+
T Consensus 726 V~f~d~~~~g-------------------------------------------------K~~v~i~g~pf~gt~e~~k~l 756 (881)
T KOG0128|consen 726 VAFRDSCFFG-------------------------------------------------KISVAISGPPFQGTKEELKSL 756 (881)
T ss_pred hhhhhhhhhh-------------------------------------------------hhhhheeCCCCCCchHHHHhh
Confidence 9765444433 137899999999999999999
Q ss_pred hccCCCeEEEEeeC-----CCeEEEEEeecCCCC
Q 017133 348 FSQFGEILSVKIPV-----GKGCGFVQFANRLVS 376 (376)
Q Consensus 348 F~~~G~i~~~~i~~-----~~g~afV~F~~~e~~ 376 (376)
|+.+|.++++++.. .+|.|+|.|.++.++
T Consensus 757 ~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~ 790 (881)
T KOG0128|consen 757 ASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADA 790 (881)
T ss_pred ccccCCccccchhhhhccccccceeccCCCcchh
Confidence 99999999998764 469999999987654
No 123
>smart00361 RRM_1 RNA recognition motif.
Probab=99.04 E-value=7.6e-10 Score=76.34 Aligned_cols=56 Identities=14% Similarity=0.284 Sum_probs=49.8
Q ss_pred HHHHHHHHH----hcCCceEEE-EeecCCC--CCccceEEEEecCHHHHHHHHHHhcCCcCCC
Q 017133 129 ETFLHNCFS----HTGQVVNVK-VIRNKQT--GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (376)
Q Consensus 129 ~~~l~~~f~----~~G~v~~~~-~~~~~~~--g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~ 184 (376)
+++|+++|+ .||.|.++. ++.++.+ +.++|++||+|.+.++|.+|++.|+|..+.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g 64 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG 64 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 578888888 999999996 7777666 8999999999999999999999999998844
No 124
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.98 E-value=1.1e-09 Score=71.99 Aligned_cols=56 Identities=32% Similarity=0.660 Sum_probs=48.3
Q ss_pred HHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccccc
Q 017133 132 LHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (376)
Q Consensus 132 l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 194 (376)
|+++|++||.|.++.+..++ +++|||+|.+.++|..|++.|++..+ .++.+++.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~--~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQF--NGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEE--TTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEEEEC
Confidence 68899999999999987765 47999999999999999999999998 5667777764
No 125
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.98 E-value=8.8e-10 Score=104.37 Aligned_cols=108 Identities=23% Similarity=0.382 Sum_probs=84.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
.++|||||+|+..+++.||..+|+.||.|.+|.++..+ |||||.+....+|.+|+.+|++..+ ..+.|++.|
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R------~cAfI~M~~RqdA~kalqkl~n~kv--~~k~Iki~W 491 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR------GCAFIKMVRRQDAEKALQKLSNVKV--ADKTIKIAW 491 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC------ceeEEEEeehhHHHHHHHHHhcccc--cceeeEEee
Confidence 56799999999999999999999999999999988754 7999999999999999999998777 778899999
Q ss_pred cccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHH
Q 017133 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229 (376)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F 229 (376)
+.-..........-...+=|+-||+..-.+||+.++
T Consensus 492 a~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~ 527 (894)
T KOG0132|consen 492 AVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWC 527 (894)
T ss_pred eccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhh
Confidence 875443332111122233455567665555566665
No 126
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.93 E-value=3.4e-10 Score=91.39 Aligned_cols=121 Identities=26% Similarity=0.359 Sum_probs=99.8
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
...++|||.|+...++++-|.++|- ..|.|.+|.|..++. +..| ||||.|.++-+..-|++.+||..+.++.|.+.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~Elfi-qaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFI-QAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhh-ccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 3567999999999999999999996 999999999988865 6666 999999999999999999999999999888776
Q ss_pred cCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeC----
Q 017133 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV---- 361 (376)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~---- 361 (376)
-...... -|...++++.+.++|+.-|.+..+++.+
T Consensus 84 r~G~sha-----------------------------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~ 122 (267)
T KOG4454|consen 84 RCGNSHA-----------------------------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDG 122 (267)
T ss_pred ccCCCcc-----------------------------------------hhhhhcchhhheeeecccCCCCCccccccccC
Confidence 5433211 2566778888888898888888888875
Q ss_pred -CCeEEEEEe
Q 017133 362 -GKGCGFVQF 370 (376)
Q Consensus 362 -~~g~afV~F 370 (376)
++.++|+.+
T Consensus 123 rnrn~~~~~~ 132 (267)
T KOG4454|consen 123 RNRNFGFVTY 132 (267)
T ss_pred CccCccchhh
Confidence 356666654
No 127
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.4e-09 Score=93.93 Aligned_cols=81 Identities=23% Similarity=0.453 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
++...|||..|.+.+++++|.-+|+.||.|.+|.|++|..||-+..||||+|.+.+++++|.-++++..+ ..+.|+|.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLI--DDrRIHVD 314 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLI--DDRRIHVD 314 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceee--ccceEEee
Confidence 4567999999999999999999999999999999999999999999999999999999999999999888 55667776
Q ss_pred ccc
Q 017133 193 WAT 195 (376)
Q Consensus 193 ~~~ 195 (376)
++.
T Consensus 315 FSQ 317 (479)
T KOG0415|consen 315 FSQ 317 (479)
T ss_pred hhh
Confidence 654
No 128
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.93 E-value=2.9e-09 Score=85.65 Aligned_cols=74 Identities=30% Similarity=0.469 Sum_probs=67.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhc-CCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCC
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHT-GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~-G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~ 184 (376)
.......++|..+|..+.+.++..+|.++ |.|..+++.+++.||.++|||||+|++++.|.-|-+.||+..+.+
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e 119 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME 119 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh
Confidence 44567789999999999999999999999 788888888999999999999999999999999999999998843
No 129
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.92 E-value=5e-09 Score=98.08 Aligned_cols=187 Identities=13% Similarity=0.050 Sum_probs=132.4
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHh
Q 017133 98 LSNGKQNGSNNNFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (376)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 177 (376)
..+.+.++..+..-..+.+.+-+.+++...++.|+++||... .+..+.|..+...+...|.++|+|....++.+|+..
T Consensus 294 ~~~ns~sggstpqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r- 371 (944)
T KOG4307|consen 294 NYNNSYSGGSTPQVVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR- 371 (944)
T ss_pred cccCCCCCCCCCcccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-
Confidence 334444444455556778899999999999999999999653 455666666665555589999999999999999864
Q ss_pred cCCcCCCCCCcccccccc---------------------------------cCCC-CCccCCCCCceEEECCCCCCCcHH
Q 017133 178 SGSLMPNTDQPFRLNWAT---------------------------------FSGS-DRRTEACSDLSIFVGDLAPDVTDS 223 (376)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~---------------------------------~~~~-~~~~~~~~~~~l~v~nlp~~~t~~ 223 (376)
+...+ ..+.+.+.... .... ..........+|||..||..+++.
T Consensus 372 n~~~~--~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~ 449 (944)
T KOG4307|consen 372 NPSDD--VNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIV 449 (944)
T ss_pred Cchhh--hhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCcccccc
Confidence 22222 22222221110 0000 001122345689999999999999
Q ss_pred HHHHHHhhhCCCeeE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCC
Q 017133 224 ILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (376)
Q Consensus 224 ~l~~~F~~~~g~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 290 (376)
++.++|. .--.|++ |.|.+. .+++.++.|||.|..++++.+|..--+...++.|.|+|+-+..+.
T Consensus 450 ~~v~~f~-~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~~ 515 (944)
T KOG4307|consen 450 PPVNKFM-GAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADYA 515 (944)
T ss_pred chhhhhh-hhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeechhhHH
Confidence 9999996 5556666 666666 457888999999999999999887667777889999998776554
No 130
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.88 E-value=9.3e-09 Score=88.91 Aligned_cols=81 Identities=20% Similarity=0.411 Sum_probs=69.5
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CceecCcce
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN-GVYCSSRPM 281 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~-g~~~~g~~i 281 (376)
.+.....+|||++|...+++.||++.|. .||+|+.+.++.. +++|||+|.+.++|+.|.+.+- ...|+|..|
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFy-qyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFY-QYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHh-hcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 4455567999999999999999999996 9999999998865 3599999999999999987654 455799999
Q ss_pred EEeecCCCC
Q 017133 282 RIDVATPKK 290 (376)
Q Consensus 282 ~v~~~~~~~ 290 (376)
.|.|+.++.
T Consensus 296 ~i~Wg~~~~ 304 (377)
T KOG0153|consen 296 KIKWGRPKQ 304 (377)
T ss_pred EEEeCCCcc
Confidence 999999843
No 131
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=3.1e-08 Score=91.06 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=58.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcC
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~ 182 (376)
.+-..++|+|-|||.++++++|+.+|+.||+|+.++.... .+|.+||+|.|..+|+.|++.|++..+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~ 137 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREI 137 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999765443 458999999999999999998876544
No 132
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=4.1e-09 Score=96.68 Aligned_cols=73 Identities=19% Similarity=0.342 Sum_probs=65.4
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
...+.++|+|-|||..+++++|+++|+ .||+|+.|+.- ...+|.+||+|-|..+|++|+++|++.++.|+.|.
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~-~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFG-AYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHH-hhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345678999999999999999999996 99999997643 44568999999999999999999999999999998
No 133
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.84 E-value=7.2e-09 Score=94.91 Aligned_cols=81 Identities=23% Similarity=0.440 Sum_probs=74.6
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecC
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 287 (376)
.+.|||.+|...+...||+.+|+ +||.|+-.+|+.+..+.-.+.|+||++.+.++|.+||+.||.+.|.|+.|.|..++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFS-KyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFS-KYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHH-HhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 46899999999999999999997 99999999999887766678899999999999999999999999999999999886
Q ss_pred CC
Q 017133 288 PK 289 (376)
Q Consensus 288 ~~ 289 (376)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 53
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.83 E-value=1.4e-08 Score=85.97 Aligned_cols=83 Identities=30% Similarity=0.485 Sum_probs=75.2
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecC
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 287 (376)
..+|+|.|||+.++++||+++|. .||.+..+-+.+++ .|.+.|.|-|.|...+||.+|++.++|..++|+.+++....
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~-~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFA-EFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHH-HhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 36899999999999999999995 99999999888885 49999999999999999999999999999999999998886
Q ss_pred CCCcC
Q 017133 288 PKKAS 292 (376)
Q Consensus 288 ~~~~~ 292 (376)
.....
T Consensus 161 ~~~~~ 165 (243)
T KOG0533|consen 161 SPSQS 165 (243)
T ss_pred Ccccc
Confidence 65433
No 135
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.76 E-value=8.6e-08 Score=69.33 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=70.6
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhh-CCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec----CcceEE
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSK-YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS----SRPMRI 283 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~-~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~----g~~i~v 283 (376)
+||.|+|||...|.++|.+++.+. .|...-+.+..|-.++.+.|||||.|.+.++|.+-.+.++|+.+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999998533 455677888899888999999999999999999999999998874 577888
Q ss_pred eecCCCC
Q 017133 284 DVATPKK 290 (376)
Q Consensus 284 ~~~~~~~ 290 (376)
.||+..+
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 8887643
No 136
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=8.6e-09 Score=99.40 Aligned_cols=136 Identities=19% Similarity=0.328 Sum_probs=117.0
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
...+++||++||+..+++.+|+..|. .+|.|.+|.|..... +...-|+||.|.+...+-.|+..+.+..|..-.+++.
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~-e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFD-ESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhh-hhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 44567999999999999999999995 999999999877643 3444599999999999999999999998887777777
Q ss_pred ecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCCCe
Q 017133 285 VATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKG 364 (376)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~g 364 (376)
+..++. ...+.+||++|+..+....|..+|..||.|..|.+...--
T Consensus 447 lG~~ks----------------------------------t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~ 492 (975)
T KOG0112|consen 447 LGQPKS----------------------------------TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP 492 (975)
T ss_pred cccccc----------------------------------ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc
Confidence 776532 2357899999999999999999999999999999998889
Q ss_pred EEEEEeecCCCC
Q 017133 365 CGFVQFANRLVS 376 (376)
Q Consensus 365 ~afV~F~~~e~~ 376 (376)
||+|.|.+...|
T Consensus 493 yayi~yes~~~a 504 (975)
T KOG0112|consen 493 YAYIQYESPPAA 504 (975)
T ss_pred ceeeecccCccc
Confidence 999999987643
No 137
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=3.2e-08 Score=85.70 Aligned_cols=80 Identities=24% Similarity=0.404 Sum_probs=68.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
..+....+|||++|-..++|.+|+++|.+||+|.++.++..+ ++|||+|.+.++|+.|.+++.+ .+...+..+
T Consensus 223 PeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n-~lvI~G~Rl 295 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFN-KLVINGFRL 295 (377)
T ss_pred CcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcc-eeeecceEE
Confidence 445567899999999999999999999999999999988765 5999999999999999987666 344477888
Q ss_pred ccccccc
Q 017133 190 RLNWATF 196 (376)
Q Consensus 190 ~~~~~~~ 196 (376)
++.|...
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 8889876
No 138
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.64 E-value=4.6e-08 Score=83.14 Aligned_cols=83 Identities=18% Similarity=0.304 Sum_probs=76.9
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
....+.+||+|+.+.+|.+++...| +.||.|..+.+..|+..+.++||+||+|.+.+.+..|+. |++..|.++.|+|.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf-~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHF-ESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred ccCCceEEEeccccccccchhhhee-eccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 3456789999999999999999999 599999999999999999999999999999999999997 99999999999999
Q ss_pred ecCCC
Q 017133 285 VATPK 289 (376)
Q Consensus 285 ~~~~~ 289 (376)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 88654
No 139
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.58 E-value=9.7e-08 Score=79.23 Aligned_cols=81 Identities=30% Similarity=0.547 Sum_probs=73.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
+....+||-|.|..+++++.|-..|++|-.....++++|+.+|+++||+||.|.+..++..|++.++|+.+ ..++|++
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV--gsrpikl 264 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV--GSRPIKL 264 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc--ccchhHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999 4556655
Q ss_pred ccc
Q 017133 192 NWA 194 (376)
Q Consensus 192 ~~~ 194 (376)
..+
T Consensus 265 RkS 267 (290)
T KOG0226|consen 265 RKS 267 (290)
T ss_pred hhh
Confidence 433
No 140
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.57 E-value=1.9e-07 Score=85.88 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
..-.+.|||++|...+-..+|+.+|++||.|+..+|+.+..+.-.++|+||.+.+.++|.+||+.|+...+ .++.|.|
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTEL--HGrmISV 479 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTEL--HGRMISV 479 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhh--cceeeee
Confidence 34567899999999999999999999999999999999987888899999999999999999999998888 5667777
Q ss_pred ccccc
Q 017133 192 NWATF 196 (376)
Q Consensus 192 ~~~~~ 196 (376)
..+.-
T Consensus 480 EkaKN 484 (940)
T KOG4661|consen 480 EKAKN 484 (940)
T ss_pred eeccc
Confidence 66543
No 141
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.57 E-value=2.2e-07 Score=78.72 Aligned_cols=79 Identities=22% Similarity=0.380 Sum_probs=68.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
.....+|+|.|||+.++++||+++|..||.+..+.+-.++ +|++.|.|-|.|...++|..|++.+++..++ +.++++
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld--G~~mk~ 156 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALD--GRPMKI 156 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccC--Cceeee
Confidence 3445789999999999999999999999988888887776 7999999999999999999999999997774 445555
Q ss_pred cc
Q 017133 192 NW 193 (376)
Q Consensus 192 ~~ 193 (376)
..
T Consensus 157 ~~ 158 (243)
T KOG0533|consen 157 EI 158 (243)
T ss_pred EE
Confidence 44
No 142
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.53 E-value=6.9e-08 Score=84.96 Aligned_cols=147 Identities=24% Similarity=0.309 Sum_probs=111.6
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
...++|++++..++.+.++..++. .+|.+....+........++|++++.|...+.+..|+...-...+.++.+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~-~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSS-EAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccch-hhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 456899999999999888888884 8888887877776677889999999999999999999654335666776666666
Q ss_pred CCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeC-----
Q 017133 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV----- 361 (376)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~----- 361 (376)
.....+. .............+.++|.++++.+++++|+++|..+|.|..++++.
T Consensus 166 ~~~~~~~---------------------~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~ 224 (285)
T KOG4210|consen 166 TRRGLRP---------------------KNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESG 224 (285)
T ss_pred ccccccc---------------------cchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCcc
Confidence 5543210 00001122233344555999999999999999999999999999975
Q ss_pred -CCeEEEEEeecCCC
Q 017133 362 -GKGCGFVQFANRLV 375 (376)
Q Consensus 362 -~~g~afV~F~~~e~ 375 (376)
.+++|+|.|.+..+
T Consensus 225 ~~kg~a~~~~~~~~~ 239 (285)
T KOG4210|consen 225 DSKGFAYVDFSAGNS 239 (285)
T ss_pred chhhhhhhhhhhchh
Confidence 46999999987654
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.45 E-value=2.2e-06 Score=62.04 Aligned_cols=70 Identities=21% Similarity=0.314 Sum_probs=61.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhc--CCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCC
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHT--GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~--G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~ 184 (376)
.+||+|+|||...+.++|.+++... |...-+.++.|..++.+.|||||.|.+.+.|....+.++|..+..
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 3689999999999999999988763 566667788898889999999999999999999999999988753
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.45 E-value=3.8e-07 Score=83.71 Aligned_cols=79 Identities=27% Similarity=0.524 Sum_probs=67.8
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 288 (376)
.+|||+|||.+++.++|+++| +.||.|+...|......++...|+||+|.+.+++..||.+ +-..|+++.+.|+--++
T Consensus 289 ~~i~V~nlP~da~~~~l~~~F-k~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVF-KQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHH-hhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 459999999999999999999 6999999998887653345448999999999999999976 57778999999987665
Q ss_pred C
Q 017133 289 K 289 (376)
Q Consensus 289 ~ 289 (376)
.
T Consensus 367 ~ 367 (419)
T KOG0116|consen 367 G 367 (419)
T ss_pred c
Confidence 3
No 145
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.41 E-value=1.2e-06 Score=80.42 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=63.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
.......+|||+|||.++++++|+++|..||.|+...|......++..+||||+|.+.+++..|+.+- .+...++.+
T Consensus 283 ~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As---p~~ig~~kl 359 (419)
T KOG0116|consen 283 EPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS---PLEIGGRKL 359 (419)
T ss_pred ceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC---ccccCCeeE
Confidence 34445566999999999999999999999999999888775534555599999999999999999764 333344555
Q ss_pred cccc
Q 017133 190 RLNW 193 (376)
Q Consensus 190 ~~~~ 193 (376)
.|+.
T Consensus 360 ~Vee 363 (419)
T KOG0116|consen 360 NVEE 363 (419)
T ss_pred EEEe
Confidence 5443
No 146
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.40 E-value=6.7e-07 Score=84.44 Aligned_cols=86 Identities=22% Similarity=0.478 Sum_probs=75.2
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecC---CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS---NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 280 (376)
....++.|||+||++.++++.|...|. .||.|..++|+..+ ...+.+.|+||-|.+..||++|++.|+|..+.+..
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfG-rfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFG-RFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhc-ccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 345567899999999999999999997 99999999998653 23455679999999999999999999999999999
Q ss_pred eEEeecCCCC
Q 017133 281 MRIDVATPKK 290 (376)
Q Consensus 281 i~v~~~~~~~ 290 (376)
+++.|++.-.
T Consensus 249 ~K~gWgk~V~ 258 (877)
T KOG0151|consen 249 MKLGWGKAVP 258 (877)
T ss_pred eeeccccccc
Confidence 9999996543
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.33 E-value=1.9e-06 Score=81.45 Aligned_cols=82 Identities=28% Similarity=0.602 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCC---CCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT---GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 188 (376)
++.++.|||+||++.++++.|...|..||+|.+++|+..+.. .+.+-|+||-|.+..+|++|++.|+|..+ ....
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv--~~~e 248 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV--MEYE 248 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee--eeee
Confidence 456788999999999999999999999999999999886532 35567999999999999999999999988 5677
Q ss_pred ccccccc
Q 017133 189 FRLNWAT 195 (376)
Q Consensus 189 ~~~~~~~ 195 (376)
+++-|+.
T Consensus 249 ~K~gWgk 255 (877)
T KOG0151|consen 249 MKLGWGK 255 (877)
T ss_pred eeecccc
Confidence 7888875
No 148
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.32 E-value=6.9e-08 Score=85.58 Aligned_cols=155 Identities=14% Similarity=0.278 Sum_probs=116.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCceE-EEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccccc
Q 017133 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVN-VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (376)
Q Consensus 116 ~~v~v~nLp~~~~~~~l~~~f~~~G~v~~-~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 194 (376)
..+||+||.+.++..+|..+|.....-.+ -.++. .||+||.+.+...|.+|++.+++..- ..+..+.+...
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~e-lqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVE-LQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhh-hcCceeeccch
Confidence 46899999999999999999976421111 11222 27999999999999999999988642 24444444433
Q ss_pred ccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 017133 195 TFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (376)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~ 274 (376)
-.. ...++.+-|+|+|....++.|..++. .||.++.|....- ..-.-..-|+|.+.+.+..||..|+|.
T Consensus 74 v~k-------kqrsrk~Qirnippql~wevld~Ll~-qyg~ve~~eqvnt---~~etavvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 74 VPK-------KQRSRKIQIRNIPPQLQWEVLDSLLA-QYGTVENCEQVNT---DSETAVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred hhH-------HHHhhhhhHhcCCHHHHHHHHHHHHh-ccCCHhHhhhhcc---chHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 211 12345689999999999999999996 9999999876421 122223457899999999999999999
Q ss_pred eecCcceEEeecCCC
Q 017133 275 YCSSRPMRIDVATPK 289 (376)
Q Consensus 275 ~~~g~~i~v~~~~~~ 289 (376)
.+....+++.|....
T Consensus 143 Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 143 QLENQHLKVGYIPDE 157 (584)
T ss_pred HhhhhhhhcccCchh
Confidence 999999999988654
No 149
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.31 E-value=8.8e-07 Score=75.41 Aligned_cols=81 Identities=22% Similarity=0.461 Sum_probs=71.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
...+.+.|||+|+.+.++.+++...|+.||.+..+.+..|+..+.++||+||+|.+.+.+..++. |++..+. ++.+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~--~~~i~ 173 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP--GPAIE 173 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc--cccce
Confidence 44578899999999999999999999999999999999999999999999999999999999997 9999884 44555
Q ss_pred cccc
Q 017133 191 LNWA 194 (376)
Q Consensus 191 ~~~~ 194 (376)
+.+.
T Consensus 174 vt~~ 177 (231)
T KOG4209|consen 174 VTLK 177 (231)
T ss_pred eeee
Confidence 5443
No 150
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.26 E-value=6.2e-06 Score=56.71 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=47.0
Q ss_pred ceEEECCCCCCCcHHHH----HHHHhhhCCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 209 LSIFVGDLAPDVTDSIL----QETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l----~~~F~~~~g~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
..|+|.|||.+.+...| +.++ +.||. |..|. .+.|+|.|.+.+.|.+|.+.|+|..+.|+.|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLs-dNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLS-DNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHH-HTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHh-hccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEE
Confidence 36999999999887665 4555 46664 44441 247999999999999999999999999999999
Q ss_pred eecCCCC
Q 017133 284 DVATPKK 290 (376)
Q Consensus 284 ~~~~~~~ 290 (376)
.|.....
T Consensus 72 ~~~~~~r 78 (90)
T PF11608_consen 72 SFSPKNR 78 (90)
T ss_dssp ESS--S-
T ss_pred EEcCCcc
Confidence 9996543
No 151
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.26 E-value=9.3e-07 Score=77.84 Aligned_cols=163 Identities=15% Similarity=0.119 Sum_probs=105.0
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT---GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
..|.|.||.+++|.+.+..+|. ..|.|.++.++-.... ......|||.|.+...+..|- .|.++.+-++.|.|..
T Consensus 8 ~vIqvanispsat~dqm~tlFg-~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFG-NLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHh-hccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEe
Confidence 4899999999999999999996 9999999988753221 233468999999999999985 7788777777766654
Q ss_pred c-CCCCcCch-hhhchhhhh--hhcCCCC----------CCCCCcCCCCCC----------CCCCCcEEEEecCCCCCCH
Q 017133 286 A-TPKKASGY-QQQYSSQAL--VLAGGPG----------SNGARVQGSQSD----------GESNNATIFVGALDSDVSD 341 (376)
Q Consensus 286 ~-~~~~~~~~-~~~~~~~~~--~~~~~~~----------~~~~~~~~~~~~----------~~~~~~~l~V~nlp~~~t~ 341 (376)
. ........ .....+... ......+ .+.........+ ...-..+++|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 4 33322211 000000000 0000000 000000000001 1112467999999999999
Q ss_pred HHHHhhhccCCCeEEEEeeC--CCeEEEEEeecC
Q 017133 342 EDLREPFSQFGEILSVKIPV--GKGCGFVQFANR 373 (376)
Q Consensus 342 ~~L~~~F~~~G~i~~~~i~~--~~g~afV~F~~~ 373 (376)
.++.+.|..+|+|.+..+.. ...+|.|+|...
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~q 199 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSRSSSCSHSFRKQ 199 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCCCcchhhhHhhh
Confidence 99999999999999988753 345666777543
No 152
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.16 E-value=1.7e-06 Score=75.75 Aligned_cols=84 Identities=20% Similarity=0.287 Sum_probs=75.8
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 278 (376)
...+|||.+||..+++.+|.++|. .+|.|.. |.|.+|+.|+++||-|.|.|++...|+.|+..++++.+.+
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~-qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFL-QCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred ccccceeeccCccchHHHHHHHHh-hcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 345899999999999999999995 9998863 6788889999999999999999999999999999999999
Q ss_pred cceEEeecCCCCc
Q 017133 279 RPMRIDVATPKKA 291 (376)
Q Consensus 279 ~~i~v~~~~~~~~ 291 (376)
..|+|..+..+..
T Consensus 144 n~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 144 NTIKVSLAERRTG 156 (351)
T ss_pred CCchhhhhhhccC
Confidence 9999998876653
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.11 E-value=5.7e-06 Score=61.43 Aligned_cols=72 Identities=15% Similarity=0.282 Sum_probs=44.7
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc-----eecCcceEE
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV-----YCSSRPMRI 283 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~-----~~~g~~i~v 283 (376)
+.|+|.++...++.++|++.|+ .||.|..|.+.+... .|||+|.+.++|..|+..+.-. .+.+..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~-~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFS-QFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT--SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHH-hcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 4789999999999999999995 999999998876533 7999999999999999876543 455656555
Q ss_pred eecC
Q 017133 284 DVAT 287 (376)
Q Consensus 284 ~~~~ 287 (376)
..-.
T Consensus 75 ~vLe 78 (105)
T PF08777_consen 75 EVLE 78 (105)
T ss_dssp E---
T ss_pred EECC
Confidence 5443
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.11 E-value=4.5e-06 Score=61.98 Aligned_cols=50 Identities=32% Similarity=0.538 Sum_probs=33.6
Q ss_pred CcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCCCeEEEEEeecCCCC
Q 017133 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRLVS 376 (376)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~g~afV~F~~~e~~ 376 (376)
++.|+|.+++..++.++|+++|+.||.|.+|.+.++...|+|.|.++++|
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A 50 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAA 50 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---H
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchH
Confidence 36799999999999999999999999999999999999999999999865
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.11 E-value=6.5e-06 Score=71.20 Aligned_cols=81 Identities=20% Similarity=0.379 Sum_probs=65.9
Q ss_pred ceEEECCCCCCCcHHHH------HHHHhhhCCCeeEEEEEecCCCCC-cceEE--EEEeCCHHHHHHHHHHhCCceecCc
Q 017133 209 LSIFVGDLAPDVTDSIL------QETFSSKYPSVKGAKVIIDSNTGR-TKGYG--FVRFGDENERSRAMTEMNGVYCSSR 279 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l------~~~F~~~~g~i~~v~i~~~~~~~~-~~g~a--fV~f~~~~~A~~Al~~l~g~~~~g~ 279 (376)
.-+||-+|++.+..|++ .++|. .||.|..|.|-+...... ..+.+ ||+|.+.+||.+||.+.+|..++||
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFG-QyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFG-QYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhh-hccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 46899999998887773 48996 999999998876542221 22333 9999999999999999999999999
Q ss_pred ceEEeecCCCC
Q 017133 280 PMRIDVATPKK 290 (376)
Q Consensus 280 ~i~v~~~~~~~ 290 (376)
.|+..|...+.
T Consensus 194 ~lkatYGTTKY 204 (480)
T COG5175 194 VLKATYGTTKY 204 (480)
T ss_pred eEeeecCchHH
Confidence 99999998764
No 156
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.96 E-value=3.9e-06 Score=74.72 Aligned_cols=110 Identities=22% Similarity=0.399 Sum_probs=89.8
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-ecCcceEEeecC
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CSSRPMRIDVAT 287 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~-~~g~~i~v~~~~ 287 (376)
..+|++||.+.++..||..+|.+.--....-.++ -.||+||...+..-|.+|++.++|+. +.|+.+.+.++-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 3689999999999999999996321111111122 13799999999999999999999854 889999999998
Q ss_pred CCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEe
Q 017133 288 PKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKI 359 (376)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i 359 (376)
+++.+. +.+-|.|+|....++-|..+...||.|+.|..
T Consensus 75 ~kkqrs----------------------------------rk~Qirnippql~wevld~Ll~qyg~ve~~eq 112 (584)
T KOG2193|consen 75 PKKQRS----------------------------------RKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQ 112 (584)
T ss_pred hHHHHh----------------------------------hhhhHhcCCHHHHHHHHHHHHhccCCHhHhhh
Confidence 886663 45888999999999999999999999998865
No 157
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.88 E-value=6e-06 Score=72.86 Aligned_cols=168 Identities=11% Similarity=0.071 Sum_probs=113.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecC---CCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK---QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~---~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
...|.|.||.+.++.+.+..||.-.|.|..+.++... ........|||.|.+...+..|-...|..+++ .... .+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvd-rali-v~ 84 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVD-RALI-VR 84 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeee-eeEE-EE
Confidence 3489999999999999999999999999999987632 22345568999999999998887543333321 1111 11
Q ss_pred ccccc--------------CC--------------------CCCc------c----------CCCCCceEEECCCCCCCc
Q 017133 192 NWATF--------------SG--------------------SDRR------T----------EACSDLSIFVGDLAPDVT 221 (376)
Q Consensus 192 ~~~~~--------------~~--------------------~~~~------~----------~~~~~~~l~v~nlp~~~t 221 (376)
.+... .. .... . ...-.++++|.+|+..+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 11000 00 0000 0 000125799999999999
Q ss_pred HHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCC
Q 017133 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (376)
Q Consensus 222 ~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 290 (376)
..++.+.| +.+|+|....+.- +....+|.+.|....+...|+. ++|..+.-....+...++..
T Consensus 165 l~e~~e~f-~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~kP~k 227 (479)
T KOG4676|consen 165 LPESGESF-ERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIKPHK 227 (479)
T ss_pred chhhhhhh-hhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcCccc
Confidence 99999999 5999988776542 3445678899999999999985 57777664444444444443
No 158
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.87 E-value=3.3e-05 Score=64.63 Aligned_cols=101 Identities=18% Similarity=0.388 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcCCcCCCCCCcccccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCC
Q 017133 168 AAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT 247 (376)
Q Consensus 168 ~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~ 247 (376)
.-|..|...|++... .++.+++.++. . ..|+|.||...++.+.|.+.|+ .||.|....+..|. .
T Consensus 5 t~ae~ak~eLd~~~~--~~~~lr~rfa~-----------~-a~l~V~nl~~~~sndll~~~f~-~fg~~e~av~~vD~-r 68 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFP--KGRSLRVRFAM-----------H-AELYVVNLMQGASNDLLEQAFR-RFGPIERAVAKVDD-R 68 (275)
T ss_pred cHHHHHHHhcCCCCC--CCCceEEEeec-----------c-ceEEEEecchhhhhHHHHHhhh-hcCccchheeeecc-c
Confidence 456777888999988 77788888875 2 5899999999999999999996 99999998888884 4
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHhCCce----ecCcceEEe
Q 017133 248 GRTKGYGFVRFGDENERSRAMTEMNGVY----CSSRPMRID 284 (376)
Q Consensus 248 ~~~~g~afV~f~~~~~A~~Al~~l~g~~----~~g~~i~v~ 284 (376)
++..+-++|.|...-.|.+|+..+...- ..+++.-|.
T Consensus 69 ~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 69 GKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 8888999999999999999999885333 244554443
No 159
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.84 E-value=1.7e-05 Score=68.99 Aligned_cols=72 Identities=22% Similarity=0.443 Sum_probs=63.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcC--CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCC
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 185 (376)
...++|||||-|++|++||.+.+...| .+.+++++.++.+|.+||||+|...+..+.++.++.|-.+.+.+.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 345799999999999999999998877 678899999999999999999999999999999988776666443
No 160
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.79 E-value=6e-05 Score=66.32 Aligned_cols=82 Identities=18% Similarity=0.298 Sum_probs=72.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCce--------EEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCC
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--------NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~--------~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 183 (376)
.....+|||-+||..+++.+|.++|..||.|. .|+|.+++.|++.|+-|.|.|.+...|+.|+..+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45677999999999999999999999999774 4778899999999999999999999999999999999985
Q ss_pred CCCCcccccccc
Q 017133 184 NTDQPFRLNWAT 195 (376)
Q Consensus 184 ~~~~~~~~~~~~ 195 (376)
+ ..++|..+.
T Consensus 143 g--n~ikvs~a~ 152 (351)
T KOG1995|consen 143 G--NTIKVSLAE 152 (351)
T ss_pred C--CCchhhhhh
Confidence 5 566665554
No 161
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=97.69 E-value=0.00012 Score=67.85 Aligned_cols=101 Identities=11% Similarity=0.228 Sum_probs=72.8
Q ss_pred CHHHHHHHHHHhcCCcCCCCCCcccccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHh-hhCCCeeEEEEEec
Q 017133 166 SRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFS-SKYPSVKGAKVIID 244 (376)
Q Consensus 166 ~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~~g~i~~v~i~~~ 244 (376)
|.+-...+++..-+..++.++..+|-.. ..+.|.|+.||.++..|+|+-+|. +.|..+.+|.+..+
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~~-------------kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N 212 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPNH-------------KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN 212 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccCc-------------ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec
Confidence 3444445555555555555554444322 346788899999999999999995 35888999999887
Q ss_pred CCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceecCcceEEeec
Q 017133 245 SNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPMRIDVA 286 (376)
Q Consensus 245 ~~~~~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~i~v~~~ 286 (376)
.. .||+|++..||..|.+.|.. +.|.|++|..++-
T Consensus 213 ~n-------WyITfesd~DAQqAykylreevk~fqgKpImARIK 249 (684)
T KOG2591|consen 213 DN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIMARIK 249 (684)
T ss_pred Cc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhh
Confidence 54 89999999999999988764 5577777655543
No 162
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.67 E-value=3.2e-05 Score=64.64 Aligned_cols=73 Identities=16% Similarity=0.278 Sum_probs=61.8
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCC--------CCcc----eEEEEEeCCHHHHHHHHHHhCCc
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT--------GRTK----GYGFVRFGDENERSRAMTEMNGV 274 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~--------~~~~----g~afV~f~~~~~A~~Al~~l~g~ 274 (376)
....||+++||+.++..-|+++|+ .||.|-+|.+.....+ |.++ .-++|+|.+...|.++...||+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~-~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILS-QYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHH-hccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 456899999999999999999996 9999999998765443 2222 34899999999999999999999
Q ss_pred eecCcc
Q 017133 275 YCSSRP 280 (376)
Q Consensus 275 ~~~g~~ 280 (376)
.|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 998864
No 163
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.67 E-value=2.1e-05 Score=65.99 Aligned_cols=67 Identities=16% Similarity=0.350 Sum_probs=56.7
Q ss_pred HHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCC
Q 017133 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (376)
Q Consensus 223 ~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 290 (376)
+||...|+++||+|++++|-.+.. -.-.|-+||.|..+++|++|+..||+..+.|++|.+.++....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 567777767999999997766532 4567889999999999999999999999999999999986543
No 164
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.58 E-value=0.00052 Score=47.42 Aligned_cols=67 Identities=15% Similarity=0.284 Sum_probs=43.6
Q ss_pred ceEEEcCCCCCCCHHHH----HHHHHhcC-CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 116 KTIWIGDLFHWMDETFL----HNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 116 ~~v~v~nLp~~~~~~~l----~~~f~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
..|+|.|||.+.+...| +.++..|| .|.+| . .+.|+|.|.+.+.|.+|.+.++|..+ .+..|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdV--fG~kI~ 70 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDV--FGNKIS 70 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--S--SSS--E
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhccccc--ccceEE
Confidence 46999999999987765 45666787 55444 1 14799999999999999999999988 445555
Q ss_pred cccc
Q 017133 191 LNWA 194 (376)
Q Consensus 191 ~~~~ 194 (376)
+.+.
T Consensus 71 v~~~ 74 (90)
T PF11608_consen 71 VSFS 74 (90)
T ss_dssp EESS
T ss_pred EEEc
Confidence 5554
No 165
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.58 E-value=6.9e-05 Score=65.32 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=65.7
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..++||+||-+++|++||.+.+. .-| .+.+++++.++.+|.+||||+|-..+....++.++.|-.+.|.|..-.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~-S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQ-STGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHH-hhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 35799999999999999999884 555 36778899999999999999999999999999999999999988655553
No 166
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.56 E-value=0.0002 Score=45.81 Aligned_cols=52 Identities=15% Similarity=0.349 Sum_probs=41.6
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al 268 (376)
+.|-|.|.+.+.. ++|.+.|. .||+|..+.+... ....||+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~-~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFA-SFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHH-hcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 4688999987755 55666885 8999999887622 348999999999999985
No 167
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00037 Score=64.79 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=64.3
Q ss_pred CCceEEECCCCCCCc--H----HHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-Cc
Q 017133 207 SDLSIFVGDLAPDVT--D----SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SR 279 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t--~----~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~ 279 (376)
-...|+|.|+|---. . .-|.++|+ ++|+|..+.+..+..+ ..+||.|++|.+..+|..|++.|||+.|+ .+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfs-k~gk~vn~~~P~~e~g-gtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFS-KAGKIVNMYYPIDEEG-GTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHH-hhccccceeeccCccC-CeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 345899999985221 2 34568886 9999999999999774 49999999999999999999999999985 67
Q ss_pred ceEEeecCC
Q 017133 280 PMRIDVATP 288 (376)
Q Consensus 280 ~i~v~~~~~ 288 (376)
+..|+.-+.
T Consensus 135 tf~v~~f~d 143 (698)
T KOG2314|consen 135 TFFVRLFKD 143 (698)
T ss_pred eEEeehhhh
Confidence 777765543
No 168
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.51 E-value=0.00028 Score=45.21 Aligned_cols=52 Identities=23% Similarity=0.359 Sum_probs=42.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHH
Q 017133 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVL 174 (376)
Q Consensus 116 ~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~ 174 (376)
+.|-|.|.+.+..+. +..+|..||+|.++.+.... ...||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 568899998777754 55588899999998876433 37999999999999985
No 169
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.46 E-value=0.00018 Score=64.58 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=61.4
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEec---CCCCC--c--------ceEEEEEeCCHHHHHHHHHH
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID---SNTGR--T--------KGYGFVRFGDENERSRAMTE 270 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~---~~~~~--~--------~g~afV~f~~~~~A~~Al~~ 270 (376)
+..++++|.+.|||.+-.-+.|.++|+ .+|.|..|+|.+. +.+.+ + +-+|+|+|+..+.|.+|.+.
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg-~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFG-TVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhh-cccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 345788999999999999999999997 9999999999877 32221 1 35799999999999999988
Q ss_pred hCCceecCcceEE
Q 017133 271 MNGVYCSSRPMRI 283 (376)
Q Consensus 271 l~g~~~~g~~i~v 283 (376)
|+...-+...++|
T Consensus 306 ~~~e~~wr~glkv 318 (484)
T KOG1855|consen 306 LNPEQNWRMGLKV 318 (484)
T ss_pred hchhhhhhhcchh
Confidence 7654433333333
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.45 E-value=0.0004 Score=59.31 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=55.0
Q ss_pred HHHHHHHHhhhCCCeeEEEEEecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCC
Q 017133 222 DSILQETFSSKYPSVKGAKVIIDSNTGR-TKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (376)
Q Consensus 222 ~~~l~~~F~~~~g~i~~v~i~~~~~~~~-~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 290 (376)
++++.+.+ ++||.|.+|.|+.++..-. ..--.||+|+..++|.+|+-.|||+.|+||.++..|.+..+
T Consensus 300 ede~keEc-eKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ek 368 (378)
T KOG1996|consen 300 EDETKEEC-EKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEK 368 (378)
T ss_pred HHHHHHHH-HhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHh
Confidence 35778889 5999999998887743211 12357999999999999999999999999999988876543
No 171
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.44 E-value=0.00015 Score=65.15 Aligned_cols=79 Identities=15% Similarity=0.123 Sum_probs=64.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeec---CCCC--C--------ccceEEEEecCHHHHHHHHHHhcCC
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRN---KQTG--Q--------SEGYGFVEFYSRAAAEKVLQSYSGS 180 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~---~~~g--~--------~~g~afV~f~~~~~a~~a~~~l~~~ 180 (376)
.+++|.+.|||.+-..+.|.++|..+|.|..|+|+.. ..+. . .+-+|+|+|...+.|.+|.+.++..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 7899999999999999999999999999999999876 3222 1 2568999999999999999988765
Q ss_pred cCCCCCCccccc
Q 017133 181 LMPNTDQPFRLN 192 (376)
Q Consensus 181 ~~~~~~~~~~~~ 192 (376)
.-+..+.++++-
T Consensus 310 ~~wr~glkvkLl 321 (484)
T KOG1855|consen 310 QNWRMGLKVKLL 321 (484)
T ss_pred hhhhhcchhhhh
Confidence 554455555553
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.26 E-value=0.0013 Score=48.07 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=51.2
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEE-EEecC------CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAK-VIIDS------NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~-i~~~~------~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~ 279 (376)
..+.|.|-+.|.. ....|.+.|+ .||+|.+.. +.++. ..........|+|++..+|.+||. .||..+.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~-~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFS-SFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHH-CCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred CCeEEEEEccCHH-HHHHHHHHHH-hcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 3457888899988 5566778885 999998774 11110 001123478999999999999995 599999874
Q ss_pred -ceEEeecCC
Q 017133 280 -PMRIDVATP 288 (376)
Q Consensus 280 -~i~v~~~~~ 288 (376)
.+-|.+.++
T Consensus 82 ~mvGV~~~~~ 91 (100)
T PF05172_consen 82 LMVGVKPCDP 91 (100)
T ss_dssp EEEEEEE-HH
T ss_pred EEEEEEEcHH
Confidence 556888743
No 173
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.23 E-value=0.00027 Score=66.07 Aligned_cols=80 Identities=13% Similarity=0.120 Sum_probs=66.5
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---cCcc
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC---SSRP 280 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~---~g~~ 280 (376)
....++.|||.||-.-+|.-.|++++.+.+|.|++.+|-+ -|..|||.|.+.++|...+.+|||..+ +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3445679999999999999999999987788888774432 355899999999999999999999886 5688
Q ss_pred eEEeecCCC
Q 017133 281 MRIDVATPK 289 (376)
Q Consensus 281 i~v~~~~~~ 289 (376)
|.+.|....
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 888888653
No 174
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.20 E-value=0.00054 Score=57.54 Aligned_cols=72 Identities=21% Similarity=0.368 Sum_probs=61.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCC--------CC----ccceEEEEecCHHHHHHHHHHhcCCc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT--------GQ----SEGYGFVEFYSRAAAEKVLQSYSGSL 181 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~--------g~----~~g~afV~f~~~~~a~~a~~~l~~~~ 181 (376)
....||+++||+.+....|+++|..||.|-+|.+-....+ |. ...-++|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999988765544 22 23457899999999999999999999
Q ss_pred CCCC
Q 017133 182 MPNT 185 (376)
Q Consensus 182 ~~~~ 185 (376)
+.+.
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 8654
No 175
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.11 E-value=0.00058 Score=57.38 Aligned_cols=74 Identities=26% Similarity=0.390 Sum_probs=63.1
Q ss_pred HHHHHHHHHhCCceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCH
Q 017133 262 NERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSD 341 (376)
Q Consensus 262 ~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~ 341 (376)
.-|..|...|++....++.++|.|+..+ .|+|.||...++.
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~a---------------------------------------~l~V~nl~~~~sn 45 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMHA---------------------------------------ELYVVNLMQGASN 45 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeeccc---------------------------------------eEEEEecchhhhh
Confidence 3567788889999999999999999653 8999999999999
Q ss_pred HHHHhhhccCCCeEEEEeeC-----CCeEEEEEeecCC
Q 017133 342 EDLREPFSQFGEILSVKIPV-----GKGCGFVQFANRL 374 (376)
Q Consensus 342 ~~L~~~F~~~G~i~~~~i~~-----~~g~afV~F~~~e 374 (376)
|.|...|+.||.|....++. ..+-++|.|...-
T Consensus 46 dll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~ 83 (275)
T KOG0115|consen 46 DLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKP 83 (275)
T ss_pred HHHHHhhhhcCccchheeeecccccccccchhhhhcch
Confidence 99999999999999877653 4578888887653
No 176
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0017 Score=60.49 Aligned_cols=72 Identities=24% Similarity=0.331 Sum_probs=59.3
Q ss_pred CCCceEEEcCCCCC--CCHHH----HHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCC
Q 017133 113 DETKTIWIGDLFHW--MDETF----LHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (376)
Q Consensus 113 ~~~~~v~v~nLp~~--~~~~~----l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 185 (376)
.....|+|.|+|-- ..-+- |..+|+++|.++.+.+..+.. |.++||.|++|.+..+|..|++.|+|+.++..
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 45678999999943 22333 467899999999999988874 55999999999999999999999999988644
No 177
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.09 E-value=0.0011 Score=57.78 Aligned_cols=79 Identities=11% Similarity=0.332 Sum_probs=59.1
Q ss_pred CceEEEcCCCCCCCHHHH------HHHHHhcCCceEEEEeecCCC-CCccce--EEEEecCHHHHHHHHHHhcCCcCCCC
Q 017133 115 TKTIWIGDLFHWMDETFL------HNCFSHTGQVVNVKVIRNKQT-GQSEGY--GFVEFYSRAAAEKVLQSYSGSLMPNT 185 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l------~~~f~~~G~v~~~~~~~~~~~-g~~~g~--afV~f~~~~~a~~a~~~l~~~~~~~~ 185 (376)
..-|||-+||+.+..+++ .++|.+||.|..|.+-+...+ ....+. .||.|.+.|+|.+||...+|..+ .
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~--D 191 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL--D 191 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc--c
Confidence 345899999988777763 489999999988877654311 222232 49999999999999999999999 4
Q ss_pred CCcccccccc
Q 017133 186 DQPFRLNWAT 195 (376)
Q Consensus 186 ~~~~~~~~~~ 195 (376)
++.++..+..
T Consensus 192 Gr~lkatYGT 201 (480)
T COG5175 192 GRVLKATYGT 201 (480)
T ss_pred CceEeeecCc
Confidence 5666666554
No 178
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.91 E-value=0.0044 Score=42.90 Aligned_cols=55 Identities=16% Similarity=0.274 Sum_probs=41.5
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~ 272 (376)
....+|+ +|..+...||.++|+ .||.|. |..+-|. -|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFs-pfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFS-PFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCC-CCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhc-cCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 3467776 999999999999996 999876 4444442 69999999999999998876
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.86 E-value=0.0041 Score=48.33 Aligned_cols=58 Identities=24% Similarity=0.418 Sum_probs=45.0
Q ss_pred HHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCC
Q 017133 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (376)
Q Consensus 223 ~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 290 (376)
.+|.+.|. .||++.-+++..+ .-+|+|.+-++|.+|+ .++|.+++|+.|+|+.-.+.=
T Consensus 51 ~~ll~~~~-~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 51 DELLQKFA-QYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHH-CCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHH-hCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCccH
Confidence 36778885 8999888877654 4799999999999998 589999999999999877653
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.74 E-value=0.01 Score=38.99 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=43.3
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhC---CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKY---PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~---g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l 271 (376)
.+|+|+|+.. ++.+||+.+|. .| ....+|+.+-|. -|-|-|.+.+.|.+||.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~-~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFS-EYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHH-HhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4799999954 88899999996 66 235677777663 3888899999999999765
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.38 E-value=0.029 Score=36.81 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=44.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhc---CCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHh
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHT---GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY 177 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~---G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l 177 (376)
...|+|+|+. .++.++|+.+|..| .....|..+.|. -|=|.|.+.+.|.+|+..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4579999984 58889999999999 134577777776 3889999999999999754
No 182
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.25 E-value=0.014 Score=42.77 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=45.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEE-------------EeecCCCCCccceEEEEecCHHHHHHHHHHhcC
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVK-------------VIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~-------------~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 179 (376)
...+.|.|-+.|.. ....|.+.|++||.|.+.. +.... ....|.|.++.+|.+||+ .||
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~------NWi~I~Y~~~~~A~rAL~-~NG 75 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGG------NWIHITYDNPLSAQRALQ-KNG 75 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCT------TEEEEEESSHHHHHHHHT-TTT
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCC------CEEEEECCCHHHHHHHHH-hCC
Confidence 34567999999988 5668889999999998775 22222 378899999999999995 588
Q ss_pred CcCC
Q 017133 180 SLMP 183 (376)
Q Consensus 180 ~~~~ 183 (376)
..+.
T Consensus 76 ~i~~ 79 (100)
T PF05172_consen 76 TIFS 79 (100)
T ss_dssp EEET
T ss_pred eEEc
Confidence 8774
No 183
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.23 E-value=0.03 Score=51.24 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=58.7
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 277 (376)
++.|+|-.+|..++-.||..|+....-.|..+++++|.. .++-.++|+|.+.++|..-...+||+.+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 678999999999999999999975556689999999754 33457999999999999999999999874
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.14 E-value=0.067 Score=39.93 Aligned_cols=69 Identities=13% Similarity=0.090 Sum_probs=49.7
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 278 (376)
+..+.+...|..++.++|..+.+..-..|..++|++|.. .++-.++++|.+.++|..-...+||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 334455555666666777766653344477788888743 355679999999999999999999998743
No 185
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.09 E-value=0.003 Score=55.57 Aligned_cols=80 Identities=20% Similarity=0.378 Sum_probs=63.6
Q ss_pred ceEEECCCCCCCcHHHHH---HHHhhhCCCeeEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 017133 209 LSIFVGDLAPDVTDSILQ---ETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~---~~F~~~~g~i~~v~i~~~~~----~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i 281 (376)
.-+||-+|+..+..+++. +.|. .||.|..|.+.++.. .+-. --+||+|...++|..||...+|..++|+.+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfg-qygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFG-QYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhhCccccc-ccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 357888898887766654 6785 899999998887652 1111 238999999999999999999999999999
Q ss_pred EEeecCCCC
Q 017133 282 RIDVATPKK 290 (376)
Q Consensus 282 ~v~~~~~~~ 290 (376)
+..+...+.
T Consensus 156 ka~~gttky 164 (327)
T KOG2068|consen 156 KASLGTTKY 164 (327)
T ss_pred HHhhCCCcc
Confidence 988887764
No 186
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.02 E-value=0.0041 Score=52.54 Aligned_cols=60 Identities=18% Similarity=0.283 Sum_probs=45.6
Q ss_pred HHHHHHHH-hcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 130 TFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 130 ~~l~~~f~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
++|...|. +||.|++++|..+. .--..|-+||.|..+++|.+|+..||+..+ .+++|...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~--~G~pi~ae 143 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWY--NGRPIHAE 143 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccc--cCCcceee
Confidence 34444444 89999998766543 345778999999999999999999999988 44555443
No 187
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.99 E-value=0.021 Score=49.17 Aligned_cols=61 Identities=20% Similarity=0.153 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCCceEEEEeecCCCCCc-cceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 129 ETFLHNCFSHTGQVVNVKVIRNKQTGQS-EGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 129 ~~~l~~~f~~~G~v~~~~~~~~~~~g~~-~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
++++.+-+.+||.|..|.|......-.. .--.||+|...++|.+|+-.|||.+|.+ +.++.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGG--r~v~A 361 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGG--RVVSA 361 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecc--eeeeh
Confidence 5567889999999999998887532211 1247999999999999999999999944 44443
No 188
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.86 E-value=0.0099 Score=56.86 Aligned_cols=71 Identities=14% Similarity=0.283 Sum_probs=60.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
....+|||+|+.+.+..+-++..+..||.|.+++... |+|+.|........|+..++...+++.....++.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4578999999999999999999999999998876554 8999999999999999988887776666555553
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.85 E-value=0.045 Score=38.00 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=41.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcC
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 179 (376)
....+|+ .|......||.++|+.||.|. |..+.|. -|||...+.+.|..++..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 4456666 999999999999999999874 4444443 599999999999999987753
No 190
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.57 E-value=0.18 Score=37.72 Aligned_cols=69 Identities=10% Similarity=0.170 Sum_probs=51.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCC
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 183 (376)
.....+.+...|+.++.++|..+...+- .|..++|++|.. .++--+++.|.+.++|+.....+||+.+.
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3344555566667777777776666654 677888888753 35567889999999999999999999874
No 191
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.54 E-value=0.013 Score=55.23 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=56.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHH-hcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCC
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFS-HTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 183 (376)
....+..|+|.||-.-.|.-.|+.++. .+|.|++.||-+-+ ..|||.|.+.++|...+..|+|..|+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK------ShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK------SHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh------cceeEecccHHHHHHHHHHHhccccC
Confidence 446778999999999999999999998 56677777553333 37999999999999999999998875
No 192
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.52 E-value=0.93 Score=39.53 Aligned_cols=161 Identities=10% Similarity=0.156 Sum_probs=99.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecC-------CCCCccceEEEEecCHHHHHHHHH----HhcC
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK-------QTGQSEGYGFVEFYSRAAAEKVLQ----SYSG 179 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~-------~~g~~~g~afV~f~~~~~a~~a~~----~l~~ 179 (376)
+...+|.|...|+..+++-.++..-|..||+|++|.++.+. ...+......+.|-+.+.+-.... .|+.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999876 112344578889999887766553 2222
Q ss_pred CcCCCCCCcccccccccCCCC---------------------CccCCCCCceEEECCCCCCCcHHHH-HH---HHhhhCC
Q 017133 180 SLMPNTDQPFRLNWATFSGSD---------------------RRTEACSDLSIFVGDLAPDVTDSIL-QE---TFSSKYP 234 (376)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~v~nlp~~~t~~~l-~~---~F~~~~g 234 (376)
..-.-....+.+.+....... .-.....+|.|.|. +...+..+|+ .+ ++ +.-+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL-~~~~ 168 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFL-KNSN 168 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhh-ccCC
Confidence 111112222333332211000 00123456778885 4455544443 22 22 1223
Q ss_pred C----eeEEEEEecCC--CCCcceEEEEEeCCHHHHHHHHHHhCC
Q 017133 235 S----VKGAKVIIDSN--TGRTKGYGFVRFGDENERSRAMTEMNG 273 (376)
Q Consensus 235 ~----i~~v~i~~~~~--~~~~~g~afV~f~~~~~A~~Al~~l~g 273 (376)
. +++|.++-... ..-++.||.++|-+..-|...++.|..
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 2 55666663322 233578999999999999999888763
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.35 E-value=0.021 Score=46.79 Aligned_cols=81 Identities=14% Similarity=0.197 Sum_probs=50.6
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhh-CCCe---eEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHHHhCCceecC--
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSK-YPSV---KGAKVIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNGVYCSS-- 278 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~-~g~i---~~v~i~~~~~~--~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g-- 278 (376)
...+|.|++||+++|++++.+.++ . +++. ..+.-...... ......|||.|.+.++...-+..++|..+-+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~-~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQIS-PWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCS-S--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred cCceEEEeCCCCCCCHHHHHHHhh-hhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 345899999999999999999775 5 6655 33331222111 1123579999999999999999999977632
Q ss_pred ---cceEEeecCC
Q 017133 279 ---RPMRIDVATP 288 (376)
Q Consensus 279 ---~~i~v~~~~~ 288 (376)
....|+++--
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 3345666654
No 194
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.97 E-value=0.031 Score=39.64 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=47.7
Q ss_pred EEEEeCCHHHHHHHHHHhC-CceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEE
Q 017133 254 GFVRFGDENERSRAMTEMN-GVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFV 332 (376)
Q Consensus 254 afV~f~~~~~A~~Al~~l~-g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 332 (376)
|+|+|.+.+-|.+.++.-. ...++++.+.|...........+ -........++|.|
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k-----------------------~qv~~~vs~rtVlv 57 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQK-----------------------FQVFSGVSKRTVLV 57 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceE-----------------------EEEEEcccCCEEEE
Confidence 6899999999999986311 23356777766655332111000 01123345679999
Q ss_pred ecCCCCCCHHHHHhhhc
Q 017133 333 GALDSDVSDEDLREPFS 349 (376)
Q Consensus 333 ~nlp~~~t~~~L~~~F~ 349 (376)
.|||...++|+|++..+
T Consensus 58 sgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 58 SGIPDVLDEEELRDKLE 74 (88)
T ss_pred eCCCCCCChhhheeeEE
Confidence 99999999999998654
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.97 E-value=0.052 Score=50.98 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=53.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHh--cCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcC
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSH--TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~--~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 179 (376)
..+...|.|+|+.||..+-.|+|+.+|+. |-.+.+|.+-.+.+ -||.|++..+|..|.+.|..
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHH
Confidence 44556788999999999999999999975 67888998876653 79999999999999987644
No 196
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.79 E-value=0.17 Score=34.91 Aligned_cols=67 Identities=13% Similarity=0.308 Sum_probs=39.0
Q ss_pred eEEEC-CCCCCCcHHHHHHHHhhhCCC-----eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 210 SIFVG-DLAPDVTDSILQETFSSKYPS-----VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 210 ~l~v~-nlp~~~t~~~l~~~F~~~~g~-----i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
++||. +--..++..+|..++. ..+. |-.|.+..+ |+||+.... .|..+++.|++..+.|+.++|
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~-~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~v 71 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAIC-NEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRV 71 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHH-TCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----E
T ss_pred EEEEEcccccCCCHHHHHHHHH-hccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEE
Confidence 45552 2345688899999996 4444 445665533 899988765 788999999999999999999
Q ss_pred eec
Q 017133 284 DVA 286 (376)
Q Consensus 284 ~~~ 286 (376)
+.+
T Consensus 72 e~A 74 (74)
T PF03880_consen 72 ERA 74 (74)
T ss_dssp EE-
T ss_pred EEC
Confidence 864
No 197
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.67 E-value=0.051 Score=38.57 Aligned_cols=70 Identities=13% Similarity=0.255 Sum_probs=44.6
Q ss_pred EEEEecCHHHHHHHHHHhcCCcCCCCCCcccccccccCCCCCc----cCCCCCceEEECCCCCCCcHHHHHHHHh
Q 017133 160 GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRR----TEACSDLSIFVGDLAPDVTDSILQETFS 230 (376)
Q Consensus 160 afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 230 (376)
|+|.|.++.-|.+.++. ....+.-....+++........... ......++|.|+|||..+++++|++.+.
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 68999999999999863 3333322333333333322222111 2344567999999999999999988873
No 198
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.63 E-value=0.026 Score=46.26 Aligned_cols=70 Identities=11% Similarity=0.088 Sum_probs=44.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHh-cCCc---eEEEEeecCC-C-CCccceEEEEecCHHHHHHHHHHhcCCcC
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSH-TGQV---VNVKVIRNKQ-T-GQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~-~G~v---~~~~~~~~~~-~-g~~~g~afV~f~~~~~a~~a~~~l~~~~~ 182 (376)
.....|.|+.||+.+|++++.+.+.. ++.. ..+.-..... . .....-|||.|.+.+++......++|..+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 45679999999999999999997776 5544 2222111111 1 12335699999999999999999999765
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.42 E-value=0.12 Score=42.57 Aligned_cols=63 Identities=19% Similarity=0.195 Sum_probs=46.0
Q ss_pred cHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceecCcceEEeecCCCC
Q 017133 221 TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN--GVYCSSRPMRIDVATPKK 290 (376)
Q Consensus 221 t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~--g~~~~g~~i~v~~~~~~~ 290 (376)
..+.|+++|. .|+.+.....++.- +-..|.|.+.++|.+|...|+ +..+.|..++|.|+....
T Consensus 8 ~~~~l~~l~~-~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFS-TYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHH-TT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHH-hcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 4578999995 99998888777542 358899999999999999999 999999999999995543
No 200
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.36 E-value=0.25 Score=38.08 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=53.8
Q ss_pred CCCCCceEEEcCCCCCCC----HHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCC
Q 017133 111 TNDETKTIWIGDLFHWMD----ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~----~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~ 186 (376)
.+.+-.+|.|+=|...+. -..|...++.||+|.++.+.-.. -|.|.|.+..+|-+|+.++.... -+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~~---pg 151 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSRA---PG 151 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCCC---CC
Confidence 345677888887765553 33455667889999999876543 59999999999999999887643 34
Q ss_pred Cccccccc
Q 017133 187 QPFRLNWA 194 (376)
Q Consensus 187 ~~~~~~~~ 194 (376)
..+.+.|-
T Consensus 152 tm~qCsWq 159 (166)
T PF15023_consen 152 TMFQCSWQ 159 (166)
T ss_pred ceEEeecc
Confidence 45566554
No 201
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.32 E-value=0.13 Score=39.52 Aligned_cols=74 Identities=11% Similarity=0.100 Sum_probs=54.4
Q ss_pred CCCCceEEECCCCCCCc-HHH---HHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 017133 205 ACSDLSIFVGDLAPDVT-DSI---LQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t-~~~---l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 280 (376)
..+-.+|.|+=|..++. .+| |...++ .||.|.+|...-. -.|.|.|++..+|-+|+.+++. ...|..
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls-~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLS-VFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHH-hcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 44556888876665553 234 455565 8999999976532 2599999999999999998876 566788
Q ss_pred eEEeecC
Q 017133 281 MRIDVAT 287 (376)
Q Consensus 281 i~v~~~~ 287 (376)
+.+.|-.
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 8888764
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.11 E-value=0.035 Score=54.72 Aligned_cols=73 Identities=25% Similarity=0.276 Sum_probs=61.1
Q ss_pred EEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--cCcceEEeecCC
Q 017133 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVATP 288 (376)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~--~g~~i~v~~~~~ 288 (376)
.++.|.+-+.+-.-|..+|+ .||.|.+.+.+++-+ .|.|+|.+.+.|..|+++|+|+++ -|-+.+|.+++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s-~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCS-DYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHH-hhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34444555677788999997 999999999988854 899999999999999999999886 588899999876
Q ss_pred CC
Q 017133 289 KK 290 (376)
Q Consensus 289 ~~ 290 (376)
-.
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 53
No 203
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.08 E-value=0.56 Score=40.83 Aligned_cols=159 Identities=8% Similarity=0.110 Sum_probs=93.9
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCC-------CCCcceEEEEEeCCHHHHHHH----HHHhCC-
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN-------TGRTKGYGFVRFGDENERSRA----MTEMNG- 273 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~-------~~~~~g~afV~f~~~~~A~~A----l~~l~g- 273 (376)
-.+|.|.+.|+..+++...+.+.|. .||.|+.|+++.+.. ..+..-...+.|-+.+.+..- +..|..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv-~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFV-KFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhh-ccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999996 999999999997751 122334688999999887554 334443
Q ss_pred -ceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHH-hhh---
Q 017133 274 -VYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLR-EPF--- 348 (376)
Q Consensus 274 -~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~-~~F--- 348 (376)
+.+....|.+.|..-+.............. ...........-......+.|.|. +...+..++|. +.+
T Consensus 92 K~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~------~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL 164 (309)
T PF10567_consen 92 KTKLKSESLTLSFVSLNYQKKTDPNDEEADF------SDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFL 164 (309)
T ss_pred HHhcCCcceeEEEEEEeccccccccccccch------hhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhh
Confidence 447788888888865433321110000000 000001111122233445678884 44555444433 322
Q ss_pred ccCC----CeEEEEeeC--------CCeEEEEEeec
Q 017133 349 SQFG----EILSVKIPV--------GKGCGFVQFAN 372 (376)
Q Consensus 349 ~~~G----~i~~~~i~~--------~~g~afV~F~~ 372 (376)
..-+ .|++|.+.. .+.||+++|-+
T Consensus 165 ~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFln 200 (309)
T PF10567_consen 165 KNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLN 200 (309)
T ss_pred ccCCCceEEEEEEEEeccCcccccCCcceEEEeehh
Confidence 1113 466677764 46899999965
No 204
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.92 E-value=0.039 Score=54.38 Aligned_cols=76 Identities=20% Similarity=0.190 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccccccc
Q 017133 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATF 196 (376)
Q Consensus 117 ~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~ 196 (376)
+.++.|.+-..+..-|..+|..||.|.+.|..++-+ .|.|+|.+.++|..|+..|.|+.+...+.+.+|.+++.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 445556666788889999999999999999988875 69999999999999999999999888899999988875
Q ss_pred CC
Q 017133 197 SG 198 (376)
Q Consensus 197 ~~ 198 (376)
.+
T Consensus 374 ~~ 375 (1007)
T KOG4574|consen 374 LP 375 (1007)
T ss_pred cc
Confidence 43
No 205
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.62 E-value=0.3 Score=42.51 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=55.3
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC-cceEEeec
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS-RPMRIDVA 286 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g-~~i~v~~~ 286 (376)
+.-|.|-++|+.-. .-|..+|+ +||.|++.....+ -.+-+|+|.++-+|.+||.. +|+.|+| -.|-|+..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~-~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFS-RCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccch-hHHHHHHH-hhCeeeeeecCCC------CceEEEEecchhHHHHhhhh-cCeeeccceEEeeeec
Confidence 45788888887644 45677885 9999988765422 23899999999999999965 9999987 44667776
Q ss_pred CCCC
Q 017133 287 TPKK 290 (376)
Q Consensus 287 ~~~~ 290 (376)
..+.
T Consensus 268 tDks 271 (350)
T KOG4285|consen 268 TDKS 271 (350)
T ss_pred CCHH
Confidence 5543
No 206
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.08 E-value=0.67 Score=30.99 Aligned_cols=56 Identities=21% Similarity=0.408 Sum_probs=42.4
Q ss_pred CCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 218 ~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
..++-+|++..+ +.|+ .. +|..++. || ||-|.+.++|++|....+|+.+.+..+.+
T Consensus 10 ~~~~v~d~K~~L-r~y~-~~--~I~~d~t-----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRL-RKYR-WD--RIRDDRT-----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHH-hcCC-cc--eEEecCC-----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 346779999999 5887 33 3444432 44 89999999999999999999887766544
No 207
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.02 E-value=0.058 Score=49.71 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=56.8
Q ss_pred EEECCCCCCC-cHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 017133 211 IFVGDLAPDV-TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (376)
Q Consensus 211 l~v~nlp~~~-t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 289 (376)
|-+.-.|+.+ +-.+|...|. .||.|..|.+-... -.|.|+|.+..+|-.|. ..++-.|++|.|+|.|.++.
T Consensus 375 l~lek~~~glnt~a~ln~hfA-~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFA-QFGEIENIQVDYSS------LHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhccCCCCchHhhhhhhhh-hcCccccccccCch------hhheeeeeccccccchh-ccccceecCceeEEEEecCC
Confidence 3444444443 4578999997 99999999876552 26999999999997775 56999999999999999885
Q ss_pred C
Q 017133 290 K 290 (376)
Q Consensus 290 ~ 290 (376)
.
T Consensus 447 ~ 447 (526)
T KOG2135|consen 447 P 447 (526)
T ss_pred c
Confidence 4
No 208
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=92.37 E-value=0.13 Score=47.47 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=42.8
Q ss_pred CCCCcEEEEecCCCCC-CHHHHHhhhccCCCeEEEEeeCCCeEEEEEeecCCCC
Q 017133 324 ESNNATIFVGALDSDV-SDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRLVS 376 (376)
Q Consensus 324 ~~~~~~l~V~nlp~~~-t~~~L~~~F~~~G~i~~~~i~~~~g~afV~F~~~e~~ 376 (376)
..+.+.|-+.-+|... +.++|..+|..||+|..|.+.-+.-.|.|+|.+.-+|
T Consensus 369 ~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aea 422 (526)
T KOG2135|consen 369 VVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEA 422 (526)
T ss_pred hcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccc
Confidence 3345567777777775 5788999999999999999887678899999987765
No 209
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=92.05 E-value=0.24 Score=38.68 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=39.2
Q ss_pred HHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 131 FLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 131 ~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
+|.+.|..||.+.-++++.+ .-+|.|.+-++|-+|+. ++|..+.+....+++
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~L 103 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRL 103 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEe
Confidence 57788889999887777765 48999999999999994 799888444333333
No 210
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=91.33 E-value=0.52 Score=40.50 Aligned_cols=156 Identities=13% Similarity=0.238 Sum_probs=86.5
Q ss_pred CCCCHHHHHHHHHhc-C--CceEEEEeecCCCCCccceEEEEec----CHHHHHHHHHHhcCCcC--CCCCCcccccccc
Q 017133 125 HWMDETFLHNCFSHT-G--QVVNVKVIRNKQTGQSEGYGFVEFY----SRAAAEKVLQSYSGSLM--PNTDQPFRLNWAT 195 (376)
Q Consensus 125 ~~~~~~~l~~~f~~~-G--~v~~~~~~~~~~~g~~~g~afV~f~----~~~~a~~a~~~l~~~~~--~~~~~~~~~~~~~ 195 (376)
.+++.=+|-+-+... . ...+|+|.... .-||.|. +..-..+.+..|+|..+ .|....+++..+.
T Consensus 47 ksisnwdlmerlk~aid~~q~dsckiresn-------id~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~e 119 (445)
T KOG2891|consen 47 KSISNWDLMERLKGAIDNHQFDSCKIRESN-------IDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAE 119 (445)
T ss_pred cccchHHHHHHHHhhcccccccceeecccc-------cceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHh
Confidence 345555555444321 1 23455554432 5778775 44455666777888653 3444455554433
Q ss_pred cCCCCCc-----------------cCCCCCceEEECCCCCCC------------cHHHHHHHHhhhCCCeeEEEEEe---
Q 017133 196 FSGSDRR-----------------TEACSDLSIFVGDLAPDV------------TDSILQETFSSKYPSVKGAKVII--- 243 (376)
Q Consensus 196 ~~~~~~~-----------------~~~~~~~~l~v~nlp~~~------------t~~~l~~~F~~~~g~i~~v~i~~--- 243 (376)
....-+. ......-+||+.+||-.| +++-|+..| +.||.|..|.|..
T Consensus 120 akidfpsrhdwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~-eafg~ir~vdipicdp 198 (445)
T KOG2891|consen 120 AKIDFPSRHDWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAF-EAFGEIRNVDIPICDP 198 (445)
T ss_pred hcCCCCcccchHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHH-HHhccceecCCcccch
Confidence 2211111 112223488998888532 467799999 5999999987752
Q ss_pred --cCCCCCcce-----E---------EEEEeCCHHHHHHHHHHhCCcee----cC----cceEEeecCC
Q 017133 244 --DSNTGRTKG-----Y---------GFVRFGDENERSRAMTEMNGVYC----SS----RPMRIDVATP 288 (376)
Q Consensus 244 --~~~~~~~~g-----~---------afV~f~~~~~A~~Al~~l~g~~~----~g----~~i~v~~~~~ 288 (376)
...+++..| | |||+|.....-..|+..|.|..+ ++ -.++|.|...
T Consensus 199 lr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 199 LREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred hHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 223444432 2 45666655566677777777553 33 3456665544
No 211
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.31 E-value=0.13 Score=45.50 Aligned_cols=78 Identities=9% Similarity=0.226 Sum_probs=57.2
Q ss_pred CceEEEcCCCCCCCHHHHH---HHHHhcCCceEEEEeecCC----CCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 017133 115 TKTIWIGDLFHWMDETFLH---NCFSHTGQVVNVKVIRNKQ----TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~---~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 187 (376)
..-+||-+|+.....+++. +.|.+||.|..+.+.++.. .+.. .-+||.|...++|..||...+|..+++..
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~- 154 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRA- 154 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhh-
Confidence 3568888999777665553 6889999999998887652 1222 23899999999999999999998885443
Q ss_pred cccccccc
Q 017133 188 PFRLNWAT 195 (376)
Q Consensus 188 ~~~~~~~~ 195 (376)
++..+..
T Consensus 155 -lka~~gt 161 (327)
T KOG2068|consen 155 -LKASLGT 161 (327)
T ss_pred -hHHhhCC
Confidence 4444443
No 212
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.85 E-value=1.3 Score=41.07 Aligned_cols=68 Identities=13% Similarity=0.252 Sum_probs=58.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCC
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~ 184 (376)
++.|.|=.+|..++..||..|+..+- .|.++++++|.- ..+-.+++.|.+-++|....+.+||+.|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999998654 789999999653 334467899999999999999999988743
No 213
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.78 E-value=0.64 Score=40.54 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=46.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCC
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~ 184 (376)
..=|-|-++|+.... .|..+|.+||.|++....... -+-+|.|.+..+|.+||. .+|+.+++
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~~ng------NwMhirYssr~~A~KALs-kng~ii~g 258 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTPSNG------NWMHIRYSSRTHAQKALS-KNGTIIDG 258 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecCCCC------ceEEEEecchhHHHHhhh-hcCeeecc
Confidence 456777788875544 577899999999776544332 378999999999999996 47777753
No 214
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=89.99 E-value=0.32 Score=46.08 Aligned_cols=15 Identities=20% Similarity=0.603 Sum_probs=6.9
Q ss_pred eCCHHHHHHHHHHhC
Q 017133 258 FGDENERSRAMTEMN 272 (376)
Q Consensus 258 f~~~~~A~~Al~~l~ 272 (376)
+.+.++-++-+.+++
T Consensus 514 i~n~~~~~~~m~km~ 528 (742)
T KOG4274|consen 514 IDNNEDRKKDMSKMK 528 (742)
T ss_pred CCCcHHHHhhhhhcc
Confidence 444444444444444
No 215
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=88.92 E-value=0.69 Score=36.86 Aligned_cols=111 Identities=16% Similarity=0.121 Sum_probs=72.9
Q ss_pred CCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcCchhhhc
Q 017133 219 DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQY 298 (376)
Q Consensus 219 ~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~ 298 (376)
..+...|.+.+.+..+....+.+..- ..++..++|.+.+++.++++ .....+++..+.+...++.....
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~----- 96 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPS----- 96 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccc-----
Confidence 45666777776533333323333322 13588999999999999985 34466778888887766432211
Q ss_pred hhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCC-CCHHHHHhhhccCCCeEEEEeeC
Q 017133 299 SSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSD-VSDEDLREPFSQFGEILSVKIPV 361 (376)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~F~~~G~i~~~~i~~ 361 (376)
.........=|.|.|||.. .+++-|+.+.+.+|.+.+++...
T Consensus 97 ---------------------~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 97 ---------------------EVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ---------------------ccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 0111112334777899999 67888999999999999998764
No 216
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=84.23 E-value=3.6 Score=35.70 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=40.9
Q ss_pred CcEEEEecCCCCCCHHHHHhhhccCC-CeEEEEeeCCCeEEEEEeecCCC
Q 017133 327 NATIFVGALDSDVSDEDLREPFSQFG-EILSVKIPVGKGCGFVQFANRLV 375 (376)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~F~~~G-~i~~~~i~~~~g~afV~F~~~e~ 375 (376)
.+-|+|+||+.++...||+..+..-+ ...++.+.-..+-||.+|-|...
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRKG 379 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCccC
Confidence 45699999999999999999998876 45666776678999999988753
No 217
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.39 E-value=13 Score=35.88 Aligned_cols=130 Identities=13% Similarity=0.179 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHHhc----CCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCC
Q 017133 112 NDETKTIWIGDLFHW-MDETFLHNCFSHT----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~-~~~~~l~~~f~~~----G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~ 186 (376)
...+++|-|.||.|+ +...+|.-+|+.| |.|.+|.|.... ||- .+.+-+..+|.++....
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe-------FGk--------eRM~eEeV~GP~~el~~ 235 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE-------FGK--------ERMKEEEVHGPPKELFK 235 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh-------hhH--------HHhhhhcccCChhhhcc
Confidence 467889999999985 6788999888876 478888877653 221 11222223333221100
Q ss_pred CcccccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 017133 187 QPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (376)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 266 (376)
.+.... .+ . .....-++-.++-+ +.|+ +.+++. -||.|+|.+.++|.+
T Consensus 236 ---~~e~~~-----------~s-~-----sD~ee~~~~~~~kL-R~Yq-~~rLkY----------YyAVvecDsi~tA~~ 283 (650)
T KOG2318|consen 236 ---PVEEYK-----------ES-E-----SDDEEEEDVDREKL-RQYQ-LNRLKY----------YYAVVECDSIETAKA 283 (650)
T ss_pred ---ccccCc-----------cc-c-----cchhhhhhHHHHHH-HHHH-hhhhee----------EEEEEEecCchHHHH
Confidence 000000 00 0 01111111223444 2444 222221 289999999999999
Q ss_pred HHHHhCCceec--CcceEEeecCC
Q 017133 267 AMTEMNGVYCS--SRPMRIDVATP 288 (376)
Q Consensus 267 Al~~l~g~~~~--g~~i~v~~~~~ 288 (376)
..+.|+|..+. +..|-++|...
T Consensus 284 vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 284 VYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred HHHhcCcceeccccceeeeeecCC
Confidence 99999999986 45566666644
No 218
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=82.05 E-value=1.8 Score=42.15 Aligned_cols=72 Identities=18% Similarity=0.190 Sum_probs=60.7
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..+.-++||+|+...+..+-++.++. .+|-|..+.... |+|+.|........|+..|+-..++|..+.+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~-~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILA-KSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHh-hCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 44556899999999999999999995 999888776542 89999999999999999999888888777665
Q ss_pred ec
Q 017133 285 VA 286 (376)
Q Consensus 285 ~~ 286 (376)
..
T Consensus 107 ~d 108 (668)
T KOG2253|consen 107 VD 108 (668)
T ss_pred ch
Confidence 54
No 219
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=80.47 E-value=3 Score=34.44 Aligned_cols=60 Identities=18% Similarity=0.187 Sum_probs=42.1
Q ss_pred CHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhc--CCcCCCCCCcccccccc
Q 017133 128 DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS--GSLMPNTDQPFRLNWAT 195 (376)
Q Consensus 128 ~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~--~~~~~~~~~~~~~~~~~ 195 (376)
....|+++|..++.+..+..++.- +=..|.|.+.+.|.+|...|+ +..+ .+..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~--~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSF--NGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEE--TTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhccccccc--CCCceEEEEcc
Confidence 457899999999999888777653 358899999999999999988 6666 45557777664
No 220
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=76.07 E-value=6.8 Score=29.05 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=33.0
Q ss_pred CCCCCcHHHHHHHHhh--hCCCeeEEEEEecCCCCCcceEEEEEeCCHHH
Q 017133 216 LAPDVTDSILQETFSS--KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENE 263 (376)
Q Consensus 216 lp~~~t~~~l~~~F~~--~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 263 (376)
-|+.+|-.+++++|++ .|-.|.+-.+.+|.-..-+-..||.-|.....
T Consensus 82 ~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~~ 131 (145)
T TIGR02542 82 PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQF 131 (145)
T ss_pred CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccchh
Confidence 4678899999999975 36667766666664333344578888876643
No 221
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=75.24 E-value=16 Score=24.44 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcC
Q 017133 125 HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (376)
Q Consensus 125 ~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~ 182 (376)
..++-++++..++.|+- .+|..|+ + | -||.|.+.++|+++....++..+
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~ 58 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLF 58 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecC-C----E-EEEEECChHHHHHHHHhcCCCEE
Confidence 46788999999999962 3445555 3 2 48999999999999999888765
No 222
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=74.81 E-value=23 Score=30.99 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=38.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHH
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRA 168 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~ 168 (376)
.......|+++||+.++.-.||+..+.+.+- +.+.+.+. ...|-||+.|-+..
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKREC-TPMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCC-CceeEeee----cCCcceeEecCCcc
Confidence 3344567999999999999999999988763 23444433 34567999997643
No 223
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.56 E-value=5.4 Score=38.32 Aligned_cols=41 Identities=37% Similarity=0.375 Sum_probs=35.6
Q ss_pred CCCCCCCcEEEEecCCCC-CCHHHHHhhhccC----CCeEEEEeeC
Q 017133 321 SDGESNNATIFVGALDSD-VSDEDLREPFSQF----GEILSVKIPV 361 (376)
Q Consensus 321 ~~~~~~~~~l~V~nlp~~-~t~~~L~~~F~~~----G~i~~~~i~~ 361 (376)
......+.+|-|.||.+. +..+||..+|+.| |.|.+|.|.+
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYp 213 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYP 213 (650)
T ss_pred cccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEech
Confidence 344667889999999999 8999999999887 7999999986
No 224
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=72.13 E-value=3.7 Score=31.07 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=23.6
Q ss_pred EEEEecCCCC---------CCHHHHHhhhccCCCeEEEEeeC---CCeEEEEEeecC
Q 017133 329 TIFVGALDSD---------VSDEDLREPFSQFGEILSVKIPV---GKGCGFVQFANR 373 (376)
Q Consensus 329 ~l~V~nlp~~---------~t~~~L~~~F~~~G~i~~~~i~~---~~g~afV~F~~~ 373 (376)
++.|.|++.+ .+.++|++.|+.|..++-.-+.. ++|+++|+|.+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKD 66 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SS
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCC
Confidence 5566688554 35688999999997765333332 358999999753
No 225
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=70.68 E-value=11 Score=26.02 Aligned_cols=48 Identities=15% Similarity=0.346 Sum_probs=37.2
Q ss_pred EEEEecCCCCCCHHHHHhhhcc-CC-CeEEEEeeC---CCeEEEEEeecCCCC
Q 017133 329 TIFVGALDSDVSDEDLREPFSQ-FG-EILSVKIPV---GKGCGFVQFANRLVS 376 (376)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~-~G-~i~~~~i~~---~~g~afV~F~~~e~~ 376 (376)
.-|+..++...+..+|+..++. || .|.+|..+. +..-|||++..-++|
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a 67 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAA 67 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcH
Confidence 4566778999999999999988 66 777776543 457899999776654
No 226
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=69.67 E-value=12 Score=26.43 Aligned_cols=48 Identities=15% Similarity=0.323 Sum_probs=37.3
Q ss_pred EEEEecCCCCCCHHHHHhhhcc-CC-CeEEEEeeC---CCeEEEEEeecCCCC
Q 017133 329 TIFVGALDSDVSDEDLREPFSQ-FG-EILSVKIPV---GKGCGFVQFANRLVS 376 (376)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~-~G-~i~~~~i~~---~~g~afV~F~~~e~~ 376 (376)
.-|+.-++...+.-+|++.++. || .|.+|..+. +..-|||++....+|
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A 74 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDA 74 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcH
Confidence 3556678899999999999988 66 788887653 557899999876654
No 227
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=68.23 E-value=17 Score=26.53 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHHhhhCCCeeEEEEEecC----CCCCcceEEEEEeCCHHHHHHH
Q 017133 218 PDVTDSILQETFSSKYPSVKGAKVIIDS----NTGRTKGYGFVRFGDENERSRA 267 (376)
Q Consensus 218 ~~~t~~~l~~~F~~~~g~i~~v~i~~~~----~~~~~~g~afV~f~~~~~A~~A 267 (376)
.+.+..||++.+.+.|+.=.+..++..- ..+.++|||.| |++.+.|.+-
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 3677889988887777754444443332 23556677777 7777766543
No 228
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=67.91 E-value=1.7 Score=41.29 Aligned_cols=70 Identities=7% Similarity=0.059 Sum_probs=55.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCC
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 183 (376)
..|+|+++|+++.++-.+|..+|+.+-.+..+.+..+........+.+|.|+..-....|+..|++..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 4678999999999999999999999877766666554434456678899999888888888888876653
No 229
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=66.46 E-value=25 Score=26.29 Aligned_cols=48 Identities=13% Similarity=0.399 Sum_probs=32.4
Q ss_pred CCCcHHHHHHHHhhhCCCeeEEEEE----ecCCCCCcceEEEEEeCCHHHHHH
Q 017133 218 PDVTDSILQETFSSKYPSVKGAKVI----IDSNTGRTKGYGFVRFGDENERSR 266 (376)
Q Consensus 218 ~~~t~~~l~~~F~~~~g~i~~v~i~----~~~~~~~~~g~afV~f~~~~~A~~ 266 (376)
.+++.+||++-+++-|-.-.++.++ ..-..|++.|+|.| |++.+.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 4578889998887666654444333 22345788899988 888776654
No 230
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=61.86 E-value=1.2 Score=42.37 Aligned_cols=73 Identities=14% Similarity=0.166 Sum_probs=55.4
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 280 (376)
..++|+++|++++++..+|..++ +.+..+.++-+..+..-.+.....+|+|...-+-..|+-+|++..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~c-k~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLC-KGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHh-ccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 34689999999999999999999 58887777655444333444567899999888888888888877665433
No 231
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=61.79 E-value=33 Score=23.41 Aligned_cols=57 Identities=19% Similarity=0.374 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHhcC-----CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 125 HWMDETFLHNCFSHTG-----QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 125 ~~~~~~~l~~~f~~~G-----~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
..++..+|..++...+ .|-.+.+..+ |+||+-... .|..+++.|++..+ .++.++++
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~--~gk~v~ve 72 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKI--KGKKVRVE 72 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--S--SS----EE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCC--CCeeEEEE
Confidence 4567888888887765 3445665443 789987764 68899999999888 45555554
No 232
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=61.43 E-value=18 Score=24.33 Aligned_cols=64 Identities=9% Similarity=0.133 Sum_probs=44.3
Q ss_pred HHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 017133 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (376)
Q Consensus 223 ~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 289 (376)
++|.+.|.+..-.|..+.-++.+.++.+-..-||+++...+...+ ++=+.+++..|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 567777753444477777777766677778889998887663333 4556788888888877654
No 233
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=61.16 E-value=18 Score=23.75 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=16.5
Q ss_pred HHHHHhhhccCCCeEEEEee
Q 017133 341 DEDLREPFSQFGEILSVKIP 360 (376)
Q Consensus 341 ~~~L~~~F~~~G~i~~~~i~ 360 (376)
-.+|+++|+..|.|.-+.+-
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEc
Confidence 36899999999998877664
No 234
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.03 E-value=69 Score=29.61 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=42.6
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 269 (376)
...|-|.++|.....+||...|+ .|++ =.+|.++-|. .||.-|.+...|..||-
T Consensus 391 pHVlEIydfp~efkteDll~~f~-~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFE-TYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHH-HhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 35789999999999999999996 7765 3345554442 79999999999999984
No 235
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.21 E-value=26 Score=32.21 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=44.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEeecCCCCCccceEEEEecCHHHHHHHHHH
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQS 176 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~-v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 176 (376)
-...|-|-++|.....+||...|..|+. =-+|+.+.|. .||..|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 3457899999999999999999999974 2345555554 699999999999999953
No 236
>PRK11901 hypothetical protein; Reviewed
Probab=57.65 E-value=23 Score=31.85 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=41.0
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEE--EeCCHHHHHHHHHHhCC
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFV--RFGDENERSRAMTEMNG 273 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV--~f~~~~~A~~Al~~l~g 273 (376)
...+|-|..+ ..++.|..|. +.++ +..+++..-..+|+.+ |..| .|.+.++|..|+..|-.
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~-~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYA-KKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHH-HHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 4456777654 3477788887 4665 4556666554455554 3333 89999999999998764
No 237
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=57.55 E-value=8.6 Score=33.29 Aligned_cols=35 Identities=37% Similarity=0.651 Sum_probs=28.3
Q ss_pred CCcEEEEecCCCCC------------CHHHHHhhhccCCCeEEEEee
Q 017133 326 NNATIFVGALDSDV------------SDEDLREPFSQFGEILSVKIP 360 (376)
Q Consensus 326 ~~~~l~V~nlp~~~------------t~~~L~~~F~~~G~i~~~~i~ 360 (376)
..-+|++.+||-+| +++.|+..|+.||.|..|.|+
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 44578888887653 467799999999999999986
No 238
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=57.33 E-value=30 Score=26.68 Aligned_cols=49 Identities=16% Similarity=0.392 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHhhhCC-CeeEEEEEe----cCCCCCcceEEEEEeCCHHHHHHH
Q 017133 218 PDVTDSILQETFSSKYP-SVKGAKVII----DSNTGRTKGYGFVRFGDENERSRA 267 (376)
Q Consensus 218 ~~~t~~~l~~~F~~~~g-~i~~v~i~~----~~~~~~~~g~afV~f~~~~~A~~A 267 (376)
.+.+..||++.+++.|+ .=.+..++. .-..+.+.|||.| |++.+.+..-
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 36788999998887788 222222222 2224567777777 7777665543
No 239
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=55.63 E-value=15 Score=35.31 Aligned_cols=17 Identities=6% Similarity=0.100 Sum_probs=10.7
Q ss_pred EeCCHHHHHHHHHHhCC
Q 017133 257 RFGDENERSRAMTEMNG 273 (376)
Q Consensus 257 ~f~~~~~A~~Al~~l~g 273 (376)
-.++..-++.|+++|..
T Consensus 542 pl~tl~kce~Alek~~~ 558 (742)
T KOG4274|consen 542 PLKTLQKCEIALEKLKN 558 (742)
T ss_pred chhhhccccccHhhccC
Confidence 34555667777777654
No 240
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=53.57 E-value=33 Score=22.57 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCCceEEEEee
Q 017133 130 TFLHNCFSHTGQVVNVKVIR 149 (376)
Q Consensus 130 ~~l~~~f~~~G~v~~~~~~~ 149 (376)
.+||++|+..|.|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999986655433
No 241
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=52.14 E-value=42 Score=21.58 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=38.2
Q ss_pred EEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCCCeEEEEEeecCC
Q 017133 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRL 374 (376)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~g~afV~F~~~e 374 (376)
++.|.||.-.--...|++.+...-.|.++.+-...+.+-|.|+...
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~ 46 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDK 46 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCC
Confidence 5678888888778889999999888999999888889999987553
No 242
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=51.28 E-value=22 Score=26.85 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEec-CHHHHHHHHH
Q 017133 127 MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFY-SRAAAEKVLQ 175 (376)
Q Consensus 127 ~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~-~~~~a~~a~~ 175 (376)
++.++|++.|+.|.+++ ++.+.++. -..|+++|+|. +-..-..|++
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 45688999999998874 66666653 67789999996 4455555553
No 243
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=50.95 E-value=62 Score=22.83 Aligned_cols=49 Identities=8% Similarity=0.240 Sum_probs=27.2
Q ss_pred CCCcHHHHHHHHhhhCCCeeEE----EEEecCCCCCcceEEEEEeCCHHHHHHH
Q 017133 218 PDVTDSILQETFSSKYPSVKGA----KVIIDSNTGRTKGYGFVRFGDENERSRA 267 (376)
Q Consensus 218 ~~~t~~~l~~~F~~~~g~i~~v----~i~~~~~~~~~~g~afV~f~~~~~A~~A 267 (376)
.+.+..||++.++..|+.=.+. .+...-..+.+.|+|.| |++.+.+.+.
T Consensus 11 ~Tpsr~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk~ 63 (84)
T PF01282_consen 11 PTPSRKEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKKF 63 (84)
T ss_dssp SS--HHHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHHh
Confidence 4567788888887666542222 22222233556777777 7777766543
No 244
>PRK11901 hypothetical protein; Reviewed
Probab=47.53 E-value=94 Score=28.10 Aligned_cols=65 Identities=15% Similarity=0.243 Sum_probs=44.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEE--EecCHHHHHHHHHHhcCCc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFV--EFYSRAAAEKVLQSYSGSL 181 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV--~f~~~~~a~~a~~~l~~~~ 181 (376)
+....+|-|..+ ..++.|..|.+..+ +..+++.+....|+. .|..| .|.+.++|+.|+..|-...
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 445566776654 45888999988875 456777665544432 24333 6999999999999876543
No 245
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=47.21 E-value=5.6 Score=42.09 Aligned_cols=8 Identities=0% Similarity=-0.056 Sum_probs=3.3
Q ss_pred EEEEeCCH
Q 017133 254 GFVRFGDE 261 (376)
Q Consensus 254 afV~f~~~ 261 (376)
+|+...+.
T Consensus 633 st~sIk~q 640 (1973)
T KOG4407|consen 633 STSSIKTQ 640 (1973)
T ss_pred ceeeeecc
Confidence 34444443
No 246
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=46.28 E-value=30 Score=28.24 Aligned_cols=42 Identities=10% Similarity=0.185 Sum_probs=35.6
Q ss_pred ceEEEEEeCCHHHHHHHHHHhCCceecCc-ceEEeecCCCCcC
Q 017133 251 KGYGFVRFGDENERSRAMTEMNGVYCSSR-PMRIDVATPKKAS 292 (376)
Q Consensus 251 ~g~afV~f~~~~~A~~Al~~l~g~~~~g~-~i~v~~~~~~~~~ 292 (376)
.+...|.|.+.+.|..|...+++..|.|. .+.+.++.+....
T Consensus 51 frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~~ 93 (193)
T KOG4019|consen 51 FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHPE 93 (193)
T ss_pred hceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCCcc
Confidence 45678899999999999999999999888 8888888776544
No 247
>PF14893 PNMA: PNMA
Probab=45.77 E-value=13 Score=33.75 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=33.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHh-cCCceEEEEeec---CCCCCccceEEEEecC
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSH-TGQVVNVKVIRN---KQTGQSEGYGFVEFYS 166 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~-~G~v~~~~~~~~---~~~g~~~g~afV~f~~ 166 (376)
+..+.|.|.+||.+|++++|.+.+.. ..++-.+++... +.. ...-|+|+|..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~--~~~aalve~~e 71 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREE--NAKAALVEFAE 71 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhc--ccceeeeeccc
Confidence 56788999999999999999988765 223333333222 111 12357777754
No 248
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=45.55 E-value=29 Score=32.03 Aligned_cols=39 Identities=33% Similarity=0.414 Sum_probs=33.0
Q ss_pred CCCCcEEEEecCCCC-CCHHHHHhhhccC----CCeEEEEeeCC
Q 017133 324 ESNNATIFVGALDSD-VSDEDLREPFSQF----GEILSVKIPVG 362 (376)
Q Consensus 324 ~~~~~~l~V~nlp~~-~t~~~L~~~F~~~----G~i~~~~i~~~ 362 (376)
..+..+|.|-||.++ +...+|...|+.| |.|..|.|.++
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 556778999999999 7889999998877 79999999863
No 249
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=45.29 E-value=50 Score=25.95 Aligned_cols=117 Identities=12% Similarity=0.006 Sum_probs=66.9
Q ss_pred eEEEcCCC--CCCCHHHHHHHHHh-cCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 117 TIWIGDLF--HWMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 117 ~v~v~nLp--~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
...|+.+. ...+-..|...+.. ++....+.+..-. .++..+.|.+.+++.+++.. ....+ .+..+.+..
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l~-----~~~fl~~F~~~~d~~~vl~~-~p~~~--~~~~~~l~~ 88 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDLG-----DNLFLFQFESEEDRQRVLKG-GPWNF--NGHFLILQR 88 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEeC-----CCeEEEEEEeccceeEEEec-ccccc--cccchhhhh
Confidence 34444443 34667777777765 3433344444322 25899999999999998852 22233 234444433
Q ss_pred cccCCCCCc-cCCCCCceEEECCCCCC-CcHHHHHHHHhhhCCCeeEEEEE
Q 017133 194 ATFSGSDRR-TEACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVI 242 (376)
Q Consensus 194 ~~~~~~~~~-~~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~~g~i~~v~i~ 242 (376)
-.+...... .......-|.|.|||.. ++++-|+.+.+ .+|.+.++...
T Consensus 89 W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~-~iG~~i~vD~~ 138 (153)
T PF14111_consen 89 WSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGS-KIGEPIEVDEN 138 (153)
T ss_pred hcccccccccceeccchhhhhccCCHHHhhhHHHHHHHH-hcCCeEEEEcC
Confidence 332111111 11112334677899977 56666777774 99999888754
No 250
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=44.63 E-value=82 Score=23.36 Aligned_cols=48 Identities=19% Similarity=0.327 Sum_probs=31.4
Q ss_pred CCCcHHHHHHHHhhhCCCeeEEEEEecC----CCCCcceEEEEEeCCHHHHHH
Q 017133 218 PDVTDSILQETFSSKYPSVKGAKVIIDS----NTGRTKGYGFVRFGDENERSR 266 (376)
Q Consensus 218 ~~~t~~~l~~~F~~~~g~i~~v~i~~~~----~~~~~~g~afV~f~~~~~A~~ 266 (376)
.+.+..||++.+...+|.=.+..++..- ..++++|||-| |++.+.+..
T Consensus 30 ~TPSr~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSRKEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCHHHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 4567899999888777765554444332 23556777777 777766554
No 251
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=43.93 E-value=9.1 Score=36.84 Aligned_cols=7 Identities=14% Similarity=0.045 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 017133 223 SILQETF 229 (376)
Q Consensus 223 ~~l~~~F 229 (376)
+.|+...
T Consensus 554 Erl~~av 560 (757)
T KOG4368|consen 554 ERLLAAV 560 (757)
T ss_pred HHHHHHH
Confidence 3344333
No 252
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=43.69 E-value=24 Score=32.29 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=49.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCC---CccceEEEEecCHHHHHHHHHHhcCCcC
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG---QSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g---~~~g~afV~f~~~~~a~~a~~~l~~~~~ 182 (376)
...+.|.|..||+..++.+|.+....+-.-...........+ ...+.+||.|...++.......++|..+
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 456789999999999999999888876432222222211111 2356899999999998888888888654
No 253
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=43.35 E-value=7.9 Score=34.55 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCc
Q 017133 129 ETFLHNCFSHTGQV 142 (376)
Q Consensus 129 ~~~l~~~f~~~G~v 142 (376)
..||++++++.|.+
T Consensus 152 S~dlkdilseagtm 165 (423)
T PF02166_consen 152 SADLKDILSEAGTM 165 (423)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 35677777776644
No 254
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=42.76 E-value=83 Score=21.20 Aligned_cols=46 Identities=17% Similarity=0.309 Sum_probs=39.2
Q ss_pred cEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCCCeEEEEEeecC
Q 017133 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANR 373 (376)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~g~afV~F~~~ 373 (376)
.+|.|.++.-.-=...+++..+....|.++.+-..++.+.|.|++.
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~ 49 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSN 49 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCC
Confidence 4678888888877888999999988899999988888899999884
No 255
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=40.41 E-value=1.7e+02 Score=28.84 Aligned_cols=85 Identities=11% Similarity=0.249 Sum_probs=55.0
Q ss_pred eEEEEecCHHHHHHHHHHhcCCcCCCC-----C----CcccccccccCCCCCc-----cCCCCCceEEECCCCCCCcHHH
Q 017133 159 YGFVEFYSRAAAEKVLQSYSGSLMPNT-----D----QPFRLNWATFSGSDRR-----TEACSDLSIFVGDLAPDVTDSI 224 (376)
Q Consensus 159 ~afV~f~~~~~a~~a~~~l~~~~~~~~-----~----~~~~~~~~~~~~~~~~-----~~~~~~~~l~v~nlp~~~t~~~ 224 (376)
-||+.+.++..-+--.+.|+...+... + ..|.-+...+....+. .+...+..||+.+|..++.++-
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dV 317 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDV 317 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHH
Confidence 689999998877777777766554221 1 1111111122222222 3445567899999999999888
Q ss_pred HHHHHhhhCCCeeEEEEEec
Q 017133 225 LQETFSSKYPSVKGAKVIID 244 (376)
Q Consensus 225 l~~~F~~~~g~i~~v~i~~~ 244 (376)
-.++. +.....+.++|++.
T Consensus 318 Q~~~i-rsipGlEna~i~rp 336 (621)
T COG0445 318 QEQII-RSIPGLENAEILRP 336 (621)
T ss_pred HHHHH-HhCcccccceeecc
Confidence 88888 58888998888764
No 256
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.71 E-value=85 Score=30.90 Aligned_cols=10 Identities=0% Similarity=-0.067 Sum_probs=4.4
Q ss_pred HHHHHHHHHh
Q 017133 262 NERSRAMTEM 271 (376)
Q Consensus 262 ~~A~~Al~~l 271 (376)
.++..+++.+
T Consensus 430 ~d~~~nse~~ 439 (728)
T KOG4592|consen 430 GDPYANSELL 439 (728)
T ss_pred chHHHHHHHH
Confidence 3444444443
No 257
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=38.08 E-value=1.9e+02 Score=28.40 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=36.9
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcCchhhhch
Q 017133 250 TKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYS 299 (376)
Q Consensus 250 ~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~ 299 (376)
.+|-|.| |+++++|..|+. ++..-.|..|.|+|.-|+.-..-.+...
T Consensus 382 ~~G~A~V-F~see~a~~ai~--~g~i~~gdVvViRyeGPkGgPGMpEml~ 428 (535)
T TIGR00110 382 FEGPAKV-FESEEEALEAIL--GGKIKEGDVVVIRYEGPKGGPGMPEMLA 428 (535)
T ss_pred EEEeEEE-ECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCCCCChhhhcc
Confidence 4677877 999999999996 5666778999999999987655444443
No 258
>PRK08211 putative dehydratase; Provisional
Probab=37.24 E-value=1.1e+02 Score=30.56 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=34.8
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcCchhhhc
Q 017133 250 TKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQY 298 (376)
Q Consensus 250 ~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~ 298 (376)
.+|-|.| |+++++|.+||. ++..-.|..|.|+|.-|+.. ...+..
T Consensus 469 ~~GpArV-F~seeda~~AI~--~g~I~~GdVvVIRyeGPkG~-GMpEml 513 (655)
T PRK08211 469 HTGRARV-FTSEKSAIAAIK--HGEIKAGDILVLIGGGPSGT-GMEETY 513 (655)
T ss_pred EEEeEEE-ECCHHHHHHHHh--CCCCCCCcEEEEeCCCCCCC-Cchhhh
Confidence 4567777 999999999986 66666788999999999874 444443
No 259
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=36.73 E-value=1.5e+02 Score=20.91 Aligned_cols=54 Identities=9% Similarity=0.246 Sum_probs=38.1
Q ss_pred CCCCCCcHHHHHHHHhhhCCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 017133 215 DLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (376)
Q Consensus 215 nlp~~~t~~~l~~~F~~~~g~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l 271 (376)
-++...+..+|++.+.+.||- |.+|..+.-+ ...--|||++....+|......|
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 367888999999999655653 5566655443 22336999999999888775543
No 260
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=35.31 E-value=49 Score=30.03 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=27.3
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcC
Q 017133 254 GFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (376)
Q Consensus 254 afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~ 292 (376)
|||+|++..+|..|++.+.... .+.+++..+.+..+-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI 37 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDI 37 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccc
Confidence 7999999999999998665444 345577777665543
No 261
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=35.25 E-value=90 Score=24.59 Aligned_cols=47 Identities=9% Similarity=0.315 Sum_probs=35.5
Q ss_pred EEEEecCCCCCCHHHHHhhhcc-CC-CeEEEEeeC---CCeEEEEEeecCCC
Q 017133 329 TIFVGALDSDVSDEDLREPFSQ-FG-EILSVKIPV---GKGCGFVQFANRLV 375 (376)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~-~G-~i~~~~i~~---~~g~afV~F~~~e~ 375 (376)
.-++.-++...+..+|++.++. |+ .|..|..+. +..-|||.+....+
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~ 134 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVD 134 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCc
Confidence 4566678899999999999987 65 777776543 34689999976655
No 262
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=35.00 E-value=2.1e+02 Score=28.20 Aligned_cols=48 Identities=23% Similarity=0.294 Sum_probs=37.6
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcCchhhhchh
Q 017133 250 TKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSS 300 (376)
Q Consensus 250 ~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~ 300 (376)
.+|-|.| |+++++|.+||. +++.-.|..|.|+|.-|+.-....+....
T Consensus 397 ~~GpA~V-F~see~a~~ai~--~g~I~~gdVvViRyeGPkGgPGMpEml~~ 444 (552)
T PRK00911 397 FTGPARV-FDSEEEAMEAIL--AGKIKAGDVVVIRYEGPKGGPGMREMLAP 444 (552)
T ss_pred eeeeEEE-ECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCCCCChHHHhhH
Confidence 5677777 999999999996 46666788999999999986655555443
No 263
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=34.94 E-value=5.7e+02 Score=27.00 Aligned_cols=152 Identities=11% Similarity=0.082 Sum_probs=82.2
Q ss_pred CCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcCchhhh
Q 017133 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQ 297 (376)
Q Consensus 218 ~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~ 297 (376)
..++.+.|++.+ +..|- ++.+..+...-.++++-.|.=.+-.++.+.++..-...-+-..+.|.....+....+...
T Consensus 40 ~~~~~~~i~~~i-ed~gf--~~~~~~~~~~~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~ 116 (951)
T KOG0207|consen 40 NIVSPESIKETI-EDMGF--EASLLSDSEITASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPA 116 (951)
T ss_pred eccCHHHHHHHh-hcccc--eeeecccCccccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCc
Confidence 457889999999 46663 556666655556666666665555555555543221111223334443333322211111
Q ss_pred chhhhhhhc--CCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCCCeEEEEEeecC
Q 017133 298 YSSQALVLA--GGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANR 373 (376)
Q Consensus 298 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~g~afV~F~~~ 373 (376)
......... ..-+.............. ....|-|.++-..-....|...+...-.|.++.+....+.+.|.|+.+
T Consensus 117 v~s~~~~~e~ie~~gf~a~~i~~~~~~~~-~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~ 193 (951)
T KOG0207|consen 117 VTSPDSIAESIEDLGFSAELIESVNGNSN-QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPE 193 (951)
T ss_pred ccCchhHHHHHHhcCccceehhcccCCCC-CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEeccc
Confidence 110000000 000111110101111111 456677878877777788999999998999999988788888888754
No 264
>PRK10905 cell division protein DamX; Validated
Probab=34.54 E-value=1e+02 Score=27.79 Aligned_cols=62 Identities=15% Similarity=0.089 Sum_probs=38.7
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcce-EEEEEeCCHHHHHHHHHHhCC
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKG-YGFVRFGDENERSRAMTEMNG 273 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g-~afV~f~~~~~A~~Al~~l~g 273 (376)
...+|-|..+. +++.|+++. ++.| +....+.....+|+.+- .-+=.|.+.++|++|++.|-.
T Consensus 246 ~~YTLQL~A~S---s~~~l~~fa-kKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 246 SHYTLQLSSSS---NYDNLNGWA-KKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CceEEEEEecC---CHHHHHHHH-HHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 34566666554 457777777 4665 44444444444455431 122389999999999998753
No 265
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=34.51 E-value=32 Score=32.54 Aligned_cols=7 Identities=14% Similarity=0.192 Sum_probs=2.8
Q ss_pred CCCCCCc
Q 017133 215 DLAPDVT 221 (376)
Q Consensus 215 nlp~~~t 221 (376)
++|..++
T Consensus 395 eep~~lt 401 (775)
T KOG1151|consen 395 EEPETLT 401 (775)
T ss_pred CCccccc
Confidence 4444433
No 266
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=34.34 E-value=75 Score=22.75 Aligned_cols=46 Identities=15% Similarity=0.315 Sum_probs=33.8
Q ss_pred EEEEecCCCCCCHHHHHhhhcc-CC-CeEEEEeeC--------CC--------eEEEEEeecCC
Q 017133 329 TIFVGALDSDVSDEDLREPFSQ-FG-EILSVKIPV--------GK--------GCGFVQFANRL 374 (376)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~-~G-~i~~~~i~~--------~~--------g~afV~F~~~e 374 (376)
.-++..++..++.-+|++.++. || .|.+|..+. .+ .-|+|++...+
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~ 84 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGD 84 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTS
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCC
Confidence 3566678999999999999988 66 677776542 11 47888887653
No 267
>PF14893 PNMA: PNMA
Probab=34.27 E-value=47 Score=30.33 Aligned_cols=81 Identities=14% Similarity=0.249 Sum_probs=46.7
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhh---hCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSS---KYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~---~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
..+.|.|.+||.++++++|.+.+.. ..|...-..-++.+. ...-.|+|+|...-+-...=..+-| .|...+|
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~--~~~~aalve~~e~~n~~~iP~~i~g---~gg~W~V 91 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRRE--ENAKAALVEFAEDVNYSLIPREIPG---KGGPWRV 91 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhh--cccceeeeecccccchhhCchhcCC---CCCceEE
Confidence 4568999999999999999988742 334332221111111 1133688888765544333333222 3566777
Q ss_pred eecCCCCcC
Q 017133 284 DVATPKKAS 292 (376)
Q Consensus 284 ~~~~~~~~~ 292 (376)
-+-.+..+.
T Consensus 92 v~~p~~~D~ 100 (331)
T PF14893_consen 92 VFKPPAPDA 100 (331)
T ss_pred EecCCCCCH
Confidence 666655444
No 268
>PHA00742 hypothetical protein
Probab=34.22 E-value=22 Score=28.41 Aligned_cols=64 Identities=9% Similarity=0.229 Sum_probs=36.3
Q ss_pred EEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 017133 211 IFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (376)
Q Consensus 211 l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~ 274 (376)
+||.--..++|+++-++-..+..-.|.+.++-.......--..-||++.+.||-.+||.+|.-.
T Consensus 92 ~~IDitGSswteeqSkeRYGe~vyAiLstKvevA~kydV~GRv~FihynD~EDKlk~isALqil 155 (211)
T PHA00742 92 VWIDITGSSWTEEQSKERYGESVYAILSTKVEVAKKYDVMGRVWFIHYNDTEDKLKCISALQIL 155 (211)
T ss_pred EEEEccCCccchhhhHHhcCcchHHHHHHHHHHHHhhcccceEEEEEecChhHhhhhhHHHHHh
Confidence 5554445667887665444333222433332211111222247899999999999998887633
No 269
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=33.33 E-value=86 Score=28.43 Aligned_cols=55 Identities=22% Similarity=0.249 Sum_probs=34.3
Q ss_pred EEEEecCHHHHHHHHHHhcCCcCCCCCCcccccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHH
Q 017133 160 GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETF 229 (376)
Q Consensus 160 afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F 229 (376)
|||.|++..+|..|.+.+..... ..+++..+. +.+-|.=.||..+..+..+|..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~----~~~~v~~AP-----------eP~DI~W~NL~~~~~~r~~R~~~ 55 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP----NSWRVSPAP-----------EPDDIIWENLSISSKQRFLRRII 55 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC----CCceEeeCC-----------CcccccccccCCChHHHHHHHHH
Confidence 79999999999999986544322 233444333 11234446776666666666555
No 270
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=32.86 E-value=83 Score=21.24 Aligned_cols=63 Identities=10% Similarity=0.067 Sum_probs=41.3
Q ss_pred HHHHHHHhhhCC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 017133 223 SILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (376)
Q Consensus 223 ~~l~~~F~~~~g-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 289 (376)
++|.+.|. ..| .+..+.-+....++.+-..-+|+.....+-.. .|+=+.|+++.|.|+.....
T Consensus 2 ~~I~~~L~-~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALK-DIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHH-HcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 45777775 555 46677777666666666777888776644333 34456678888888876543
No 271
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=31.54 E-value=1.2e+02 Score=21.73 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=32.8
Q ss_pred EEEEecCCCCCCHHHHHhhhcc-CC-CeEEEEeeC----------------CCeEEEEEeecC
Q 017133 329 TIFVGALDSDVSDEDLREPFSQ-FG-EILSVKIPV----------------GKGCGFVQFANR 373 (376)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~-~G-~i~~~~i~~----------------~~g~afV~F~~~ 373 (376)
.-++..++..++.-+|++.|+. || .|.+|..+. +..-|||.+...
T Consensus 21 n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk~kr~~~~~g~~~~~KKA~VtL~~g 83 (92)
T PRK05738 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKTKRFGRRIGKRSDWKKAIVTLAEG 83 (92)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCceeeecccccccCCcEEEEEEcCCC
Confidence 4566678999999999999988 66 777776542 225678877554
No 272
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=31.30 E-value=2.5e+02 Score=28.04 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=36.6
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcCchhhhch
Q 017133 250 TKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYS 299 (376)
Q Consensus 250 ~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~ 299 (376)
.+|-|.| |+++++|.+||. ++..-.|..|.|+|.-|+.-....+...
T Consensus 447 ~~GpA~V-Fdsee~a~~ai~--~g~I~~gdVvVIRyeGPkGgPGMpEml~ 493 (615)
T PRK12448 447 FTGPARV-FESQDDAVEAIL--GGKVKAGDVVVIRYEGPKGGPGMQEMLY 493 (615)
T ss_pred EEEeEEE-ECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCCCcCHHHHHH
Confidence 4567777 999999999996 4666678999999999998655444443
No 273
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.75 E-value=62 Score=21.32 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=27.9
Q ss_pred cCCCCCC-HHHHHhhhccCC-CeEEEEeeCCCeEEEEEe
Q 017133 334 ALDSDVS-DEDLREPFSQFG-EILSVKIPVGKGCGFVQF 370 (376)
Q Consensus 334 nlp~~~t-~~~L~~~F~~~G-~i~~~~i~~~~g~afV~F 370 (376)
|.|.++- --||....-.|| .|..-++..+..+|||-|
T Consensus 6 nCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~ 44 (69)
T cd04894 6 NCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVF 44 (69)
T ss_pred eCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEE
Confidence 6666653 357888877888 677777777888999987
No 274
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=30.64 E-value=71 Score=26.05 Aligned_cols=58 Identities=21% Similarity=0.103 Sum_probs=37.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCC--CccceEEEEecCHHHHHHHHHHh
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEGYGFVEFYSRAAAEKVLQSY 177 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g--~~~g~afV~f~~~~~a~~a~~~l 177 (376)
.+++|.. +-+..-++|..+-+ |.+..+.+.+.. .+ ..+|-.||.|.+.+.|.++++..
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 3455555 33333344444444 677777665543 33 67899999999999999988653
No 275
>PF13388 DUF4106: Protein of unknown function (DUF4106)
Probab=30.61 E-value=30 Score=30.38 Aligned_cols=12 Identities=25% Similarity=0.249 Sum_probs=6.1
Q ss_pred HHHHHHHHhcCC
Q 017133 130 TFLHNCFSHTGQ 141 (376)
Q Consensus 130 ~~l~~~f~~~G~ 141 (376)
+.|+.+-+.||-
T Consensus 266 eflkmLke~~g~ 277 (422)
T PF13388_consen 266 EFLKMLKENYGY 277 (422)
T ss_pred HHHHHHHhccCC
Confidence 344445555664
No 276
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=30.10 E-value=1.5e+02 Score=18.89 Aligned_cols=42 Identities=10% Similarity=0.204 Sum_probs=26.7
Q ss_pred EEEecCCCCCCHHHHHhhhccCC-CeEEEEeeCCC--eEEEEEee
Q 017133 330 IFVGALDSDVSDEDLREPFSQFG-EILSVKIPVGK--GCGFVQFA 371 (376)
Q Consensus 330 l~V~nlp~~~t~~~L~~~F~~~G-~i~~~~i~~~~--g~afV~F~ 371 (376)
|.|..-...-.-.+|..+|+.+| .|.++...... +.+.+.|.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLD 46 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEE
Confidence 34433333445678888888886 78888776543 66666653
No 277
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=30.10 E-value=56 Score=22.13 Aligned_cols=26 Identities=12% Similarity=0.148 Sum_probs=20.9
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecC
Q 017133 253 YGFVRFGDENERSRAMTEMNGVYCSS 278 (376)
Q Consensus 253 ~afV~f~~~~~A~~Al~~l~g~~~~g 278 (376)
+.+|.|.+..+|.+|-+.|....+..
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 68999999999999988777554433
No 278
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=29.25 E-value=4.5e+02 Score=24.05 Aligned_cols=119 Identities=15% Similarity=0.164 Sum_probs=63.4
Q ss_pred CceEEEcC---CCCCCCHHHHHHHH----HhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 017133 115 TKTIWIGD---LFHWMDETFLHNCF----SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (376)
Q Consensus 115 ~~~v~v~n---Lp~~~~~~~l~~~f----~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 187 (376)
..+|.+.+ .+++-+-+.++..| +++|.-.++++.+-.. .++|-+-|.|.-.-. +.+....+...++
T Consensus 109 ~~~l~l~GgT~~~~sPsvD~~~~v~lP~l~~~G~~~~l~v~rRG~--yP~GgGeV~~~v~p~-----~~l~~i~l~~~g~ 181 (326)
T cd00874 109 PSTVTISGGTDVPWAPPIDYLRNVTLPLLERMGIEAELEVLRRGF--YPRGGGEVVLTVEPS-----KLLPPLLLEERGE 181 (326)
T ss_pred CEEEEEEcccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEEEeCCc--CCCCCEEEEEEEecc-----cCCCcceeecCCC
Confidence 34455544 45666777776644 7788777787776543 345555565543211 0111111111221
Q ss_pred cccccccccCCCCCccCCCCCceEEECCCCCCCcHHHH---HHHHhhh-CCCeeEEEEEecCCCCCcceEEEEEeC
Q 017133 188 PFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSIL---QETFSSK-YPSVKGAKVIIDSNTGRTKGYGFVRFG 259 (376)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l---~~~F~~~-~g~i~~v~i~~~~~~~~~~g~afV~f~ 259 (376)
..++ .-..+..+||..+.+..+ ++.+. . ++ .++.+..+...+.+.|++.+-+.
T Consensus 182 i~~i----------------rg~~~~~~l~~~va~r~~~~a~~~L~-~~~~--~dv~i~~~~~~~~s~G~~i~L~a 238 (326)
T cd00874 182 IEKI----------------RGISHAANLPPHVAERQAEAAAALLR-KALG--LQIEIEPEDQSALGPGSGIVLWA 238 (326)
T ss_pred eEEE----------------EEEEEEccCCHHHHHHHHHHHHHHHh-hccC--CCeEEEEEecCCCCCCEEEEEEE
Confidence 1111 125678899998877655 45553 4 33 34455544444677788776554
No 279
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=28.99 E-value=36 Score=19.59 Aligned_cols=16 Identities=25% Similarity=0.590 Sum_probs=10.0
Q ss_pred CCCCHHHHHhhhccCC
Q 017133 337 SDVSDEDLREPFSQFG 352 (376)
Q Consensus 337 ~~~t~~~L~~~F~~~G 352 (376)
.++++++|+++|...+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3578899999998754
No 280
>PF13820 Nucleic_acid_bd: Putative nucleic acid-binding region
Probab=28.86 E-value=1.4e+02 Score=23.79 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=38.7
Q ss_pred eEEECCCC-CCCcHHHHHHHHhhhCCCeeE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 017133 210 SIFVGDLA-PDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (376)
Q Consensus 210 ~l~v~nlp-~~~t~~~l~~~F~~~~g~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g 273 (376)
..|+++|. ...+.++|+..+.+-|+...+ ++..+ -...+.+.|+|.-..+|..-+..|--
T Consensus 6 la~~G~l~~~~~~ld~i~~~l~~L~~~~~~~l~~~~----~~~~~sv~V~f~ipreaa~~Lr~LA~ 67 (149)
T PF13820_consen 6 LAYIGGLRMFQYKLDDIKNWLASLYKPRISDLKVRK----VEPWNSVRVTFSIPREAATRLRQLAQ 67 (149)
T ss_pred EEEECChhhhHHHHHHHHHHHHHHHhcccccceeec----cccCceEEEEEechHHHHHHHHHHhh
Confidence 45677875 334556777777545554332 32221 23456899999999999988887653
No 281
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=28.84 E-value=27 Score=33.04 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=6.7
Q ss_pred EEECCCCCCCcHH
Q 017133 211 IFVGDLAPDVTDS 223 (376)
Q Consensus 211 l~v~nlp~~~t~~ 223 (376)
+.|--|..+|.++
T Consensus 493 vKIHqlNK~WrdE 505 (775)
T KOG1151|consen 493 VKIHQLNKNWRDE 505 (775)
T ss_pred EeeehhccchhhH
Confidence 4444555655543
No 282
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=28.82 E-value=55 Score=27.93 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=29.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEE
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV 145 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~ 145 (376)
.....++|+-|+|..++++.|..+.+.+|.+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3567899999999999999999999999965443
No 283
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=28.46 E-value=85 Score=28.94 Aligned_cols=67 Identities=13% Similarity=0.313 Sum_probs=45.0
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEe-cCCC--CCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVII-DSNT--GRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~-~~~~--~~~~g~afV~f~~~~~A~~Al~~l~g~~~ 276 (376)
..|.|..||+..++++|.+-+. .+-.-..-..+. .... ..-.+.|||.|...++...-.+.++|..+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~-p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQIN-PFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcC-CCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4788999999999999998884 765433222222 1110 01136799999999997777766777654
No 284
>CHL00030 rpl23 ribosomal protein L23
Probab=28.33 E-value=1.5e+02 Score=21.42 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=26.0
Q ss_pred EEEEecCCCCCCHHHHHhhhcc-CC-CeEEEEee
Q 017133 329 TIFVGALDSDVSDEDLREPFSQ-FG-EILSVKIP 360 (376)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~-~G-~i~~~~i~ 360 (376)
.-|+.-++.+.+..+|++.++. || .|..|..+
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~ 53 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSH 53 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEE
Confidence 4667778999999999999988 66 77777764
No 285
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.22 E-value=57 Score=27.50 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHH
Q 017133 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDEN 262 (376)
Q Consensus 222 ~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~ 262 (376)
.+||.+.|.+.||.-. .+...|.|+||+|++.-
T Consensus 88 LedL~~EF~~~~~~~~--------~~~~~RPY~FieFD~~I 120 (216)
T KOG0862|consen 88 LEDLAQEFDKSYGKNI--------IQPASRPYAFIEFDTFI 120 (216)
T ss_pred HHHHHHHHHHhccccc--------CCccCCCeeEEehhHHH
Confidence 3788888866776421 22356779999998764
No 286
>PHA01632 hypothetical protein
Probab=28.02 E-value=55 Score=20.75 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=16.5
Q ss_pred EEEecCCCCCCHHHHHhhhcc
Q 017133 330 IFVGALDSDVSDEDLREPFSQ 350 (376)
Q Consensus 330 l~V~nlp~~~t~~~L~~~F~~ 350 (376)
|.|..+|.+-|+++|++++..
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 455689999999999987543
No 287
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.88 E-value=1.9e+02 Score=19.31 Aligned_cols=43 Identities=14% Similarity=0.100 Sum_probs=29.4
Q ss_pred EEEEecCCCCCCHHHHHhhhccCC-CeEEEEeeCCCeEEEEEee
Q 017133 329 TIFVGALDSDVSDEDLREPFSQFG-EILSVKIPVGKGCGFVQFA 371 (376)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~~G-~i~~~~i~~~~g~afV~F~ 371 (376)
.|.|.--+..=--.+|..+|..+| .|.++.+....+++++.|.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~ 46 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFY 46 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEE
Confidence 445522222234578889999987 8889888766678887775
No 288
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=27.53 E-value=2.1e+02 Score=19.77 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=38.1
Q ss_pred EECCCCCCCcHHHHHHHHhhhCCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 017133 212 FVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (376)
Q Consensus 212 ~v~nlp~~~t~~~l~~~F~~~~g~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ 270 (376)
|+-.++.+.+..+|++.+.+.|+- |..|..+.-+ ...--|||++...++|...-..
T Consensus 17 y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 17 LTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHh
Confidence 333478889999999999655653 5556555443 2233699999988888776543
No 289
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=27.27 E-value=3.3e+02 Score=26.95 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=34.7
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcCchhhh
Q 017133 250 TKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQ 297 (376)
Q Consensus 250 ~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~ 297 (376)
.+|-|.| |++.++|.+||. ++..-.|..+.|+|.-|+.-..-.+.
T Consensus 414 ~eGpA~V-Fds~e~~~~ai~--~g~l~~g~VvVIRyeGPkGgpGMpEm 458 (575)
T COG0129 414 FEGPARV-FDSQEDAIKAIL--DGELKAGDVVVIRYEGPKGGPGMPEM 458 (575)
T ss_pred EEeeeEE-ECCHHHHHHHHh--cCCCCCCeEEEEeccCCCCCCCchhh
Confidence 4566776 999999999985 66666788999999999884443433
No 290
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=27.21 E-value=2.3e+02 Score=27.95 Aligned_cols=99 Identities=8% Similarity=0.067 Sum_probs=58.3
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCcceEE---eecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcE
Q 017133 253 YGFVRFGDENERSRAMTEMNGVYCSSRPMRI---DVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329 (376)
Q Consensus 253 ~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (376)
-||+++.+...-+-..+.||...+.+-.|+- +|...-.++ + ..... -.+..--..+...+...
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDK-----I-----vrF~d----K~~HqIFlEPEGl~~~e 303 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDK-----I-----VRFAD----KERHQIFLEPEGLDTDE 303 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHh-----h-----ccCCC----CccceEEecCCCCCCce
Confidence 5999999999888888888866654333321 111110000 0 00000 00000011223345678
Q ss_pred EEEecCCCCCCHHHHHhhhccCCCeEEEEeeCCCeEE
Q 017133 330 IFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCG 366 (376)
Q Consensus 330 l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~g~a 366 (376)
||+.+|..++.+|-=.++....-.++.+.|++. |||
T Consensus 304 vY~nGlSTSlP~dVQ~~~irsipGlEna~i~rp-gYA 339 (621)
T COG0445 304 VYPNGLSTSLPEDVQEQIIRSIPGLENAEILRP-GYA 339 (621)
T ss_pred EecCcccccCCHHHHHHHHHhCcccccceeecc-cee
Confidence 999999999988877777777777888888873 666
No 291
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=27.16 E-value=3.3e+02 Score=27.02 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=34.2
Q ss_pred cceEEEEEeCCHHHHHHHHHHhCCcee--cCcceEEeecCCCCcCchhh
Q 017133 250 TKGYGFVRFGDENERSRAMTEMNGVYC--SSRPMRIDVATPKKASGYQQ 296 (376)
Q Consensus 250 ~~g~afV~f~~~~~A~~Al~~l~g~~~--~g~~i~v~~~~~~~~~~~~~ 296 (376)
.+|-|.| |+++++|.+||. +++.- .|..|.|+|.-|+.-....+
T Consensus 400 ~~G~A~V-F~see~a~~ai~--~g~i~i~~gdVvVIRyeGPkGgPGMpE 445 (571)
T PRK06131 400 HEGRAVV-FEGYEDYKARID--DPDLDVDEDTVLVLRNAGPKGYPGMPE 445 (571)
T ss_pred EEeeeEE-ECCHHHHHHHHh--CCCcCCCCCeEEEEeCCCCCCCCCCcc
Confidence 4577877 999999999985 55542 78899999999988555444
No 292
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=27.11 E-value=1.8e+02 Score=24.48 Aligned_cols=53 Identities=26% Similarity=0.233 Sum_probs=36.3
Q ss_pred HHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 017133 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (376)
Q Consensus 223 ~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 278 (376)
.++.... +.|| |..+ +.+|..++...-..|+.=.+.+....|++.+....+..
T Consensus 45 k~F~k~A-kKyG-V~ya-v~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~~ 97 (204)
T PF12687_consen 45 KEFKKEA-KKYG-VDYA-VKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLKK 97 (204)
T ss_pred HHHHHHH-HHcC-CceE-EeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhhh
Confidence 3444555 5898 5544 55665555556678888888889999998887766543
No 293
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=27.05 E-value=2.3e+02 Score=20.86 Aligned_cols=43 Identities=12% Similarity=0.252 Sum_probs=30.0
Q ss_pred HHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 017133 223 SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (376)
Q Consensus 223 ~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 269 (376)
.+|.+++ +.+| |....|..|.. .+.-|+++++.|.+...++|.
T Consensus 27 PE~~a~l-k~ag-i~nYSIfLde~--~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALL-KEAG-IRNYSIFLDEE--ENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHH-HHcC-CceeEEEecCC--cccEEEEEEEcChHHHHHHHh
Confidence 4777888 4888 77777777653 344599999996666555553
No 294
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=26.80 E-value=93 Score=25.41 Aligned_cols=71 Identities=13% Similarity=0.031 Sum_probs=42.1
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT-GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
.+++|.. +.+...++|.++-+ |.+..+...+.... ...+|-.||.|.+.+.|.+.++. +......+.|...
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~---~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~ 182 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS---GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRS 182 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc---ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHH
Confidence 3466665 33333455555552 67777765443221 25689999999999999998765 3333333344333
No 295
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=26.75 E-value=21 Score=31.94 Aligned_cols=9 Identities=22% Similarity=0.800 Sum_probs=0.0
Q ss_pred ccCCCeEEE
Q 017133 349 SQFGEILSV 357 (376)
Q Consensus 349 ~~~G~i~~~ 357 (376)
.+||.+-++
T Consensus 380 cRYgdl~sl 388 (423)
T PF02166_consen 380 CRYGDLASL 388 (423)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 445555444
No 296
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=26.19 E-value=1.5e+02 Score=19.71 Aligned_cols=41 Identities=22% Similarity=0.431 Sum_probs=27.3
Q ss_pred ecCCCCCCHHHHHhhhcc--CCCeEEEEeeCCCeE-EEEEeecCC
Q 017133 333 GALDSDVSDEDLREPFSQ--FGEILSVKIPVGKGC-GFVQFANRL 374 (376)
Q Consensus 333 ~nlp~~~t~~~L~~~F~~--~G~i~~~~i~~~~g~-afV~F~~~e 374 (376)
.-+-..++. +|.+.... .|.|...++..++|. .+|+|.|-.
T Consensus 10 ~~irDRi~~-~l~~~l~~~~~g~I~~fKmtDG~giG~vv~~~ng~ 53 (64)
T PF11061_consen 10 SRIRDRIPK-ELVDKLGKNPIGTIKGFKMTDGSGIGVVVEFSNGS 53 (64)
T ss_pred hhhhhhccH-HHHHHhccCCcEEEEEEEEecCCcEEEEEEecCCc
Confidence 344444444 45555555 899999999988885 467887654
No 297
>KOG4679 consensus Uncharacterized protein PSP1 (suppressor of DNA polymerase alpha mutations in yeast) [General function prediction only]
Probab=24.98 E-value=2.3e+02 Score=26.95 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=16.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCC
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHTGQ 141 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~G~ 141 (376)
...|.+-+ -.-++..+|.+++..||.
T Consensus 243 ~glvl~~g-k~ltSsktlhdlyldcgS 268 (572)
T KOG4679|consen 243 RGLVLNPG-KSLTSSKTLHDLYLDCGS 268 (572)
T ss_pred CceEeccC-cccccchhHHHHHHhhcc
Confidence 33444433 234567788888888873
No 298
>PF13388 DUF4106: Protein of unknown function (DUF4106)
Probab=24.95 E-value=35 Score=29.97 Aligned_cols=8 Identities=25% Similarity=1.078 Sum_probs=4.1
Q ss_pred cceEEEEe
Q 017133 157 EGYGFVEF 164 (376)
Q Consensus 157 ~g~afV~f 164 (376)
+||-+|.|
T Consensus 325 kgydliay 332 (422)
T PF13388_consen 325 KGYDLIAY 332 (422)
T ss_pred cccceeee
Confidence 45555554
No 299
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.85 E-value=3.5e+02 Score=21.40 Aligned_cols=54 Identities=9% Similarity=0.198 Sum_probs=37.4
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhh--CCCeeEEEEEecCCC---------CCcc-eEEEEEeCCHH
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSK--YPSVKGAKVIIDSNT---------GRTK-GYGFVRFGDEN 262 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~--~g~i~~v~i~~~~~~---------~~~~-g~afV~f~~~~ 262 (376)
..|++.-+...+++++.++..++. -+++..|.+-+..+. ...+ .|-+|.|++-.
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~ 153 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGK 153 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccch
Confidence 589999999999999999999744 556666766544321 1122 27778887654
No 300
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=24.29 E-value=88 Score=21.96 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=22.2
Q ss_pred CcceEEEEEeCCHHHHHHHHHHhCCce
Q 017133 249 RTKGYGFVRFGDENERSRAMTEMNGVY 275 (376)
Q Consensus 249 ~~~g~afV~f~~~~~A~~Al~~l~g~~ 275 (376)
..+||.||+=.+..+...|++.+.+..
T Consensus 42 ~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 42 SLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp TSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CCceEEEEEeCCHHHHHHHHhccccee
Confidence 368999999999999999998776544
No 301
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=24.22 E-value=60 Score=27.73 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=29.6
Q ss_pred CCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEee
Q 017133 326 NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIP 360 (376)
Q Consensus 326 ~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~ 360 (376)
...+||+-|+|...|++-|.++.+.+|.+..+.+.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 44689999999999999999999999877665543
No 302
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=23.96 E-value=37 Score=31.38 Aligned_cols=61 Identities=15% Similarity=0.123 Sum_probs=48.8
Q ss_pred CceEEECCCCCCCcHH--------HHHHHHhhh--CCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 017133 208 DLSIFVGDLAPDVTDS--------ILQETFSSK--YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~--------~l~~~F~~~--~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 269 (376)
.+.+|+.++....+.+ ++...|. . .+.+..+...++.....++|..|++|...+.+.+.+.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p-~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFP-PHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCC-CcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3567888877665544 9999995 6 6778888888876667888999999999999999874
No 303
>PRK10905 cell division protein DamX; Validated
Probab=23.55 E-value=1.7e+02 Score=26.45 Aligned_cols=64 Identities=13% Similarity=0.082 Sum_probs=41.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCC-ccceEEEEecCHHHHHHHHHHhcCC
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQ-SEGYGFVEFYSRAAAEKVLQSYSGS 180 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~-~~g~afV~f~~~~~a~~a~~~l~~~ 180 (376)
....+|-|+.+ .+++.|+.|..+.| +....+.....+|+ ....-+=.|.+.++|++|+..|-..
T Consensus 245 a~~YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 245 SSHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred CCceEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 34556666654 45688888888885 45555555444444 2222233689999999999987553
No 304
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=23.27 E-value=37 Score=31.39 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=49.2
Q ss_pred CceEEEcCCCCCCCHH--------HHHHHHHh--cCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHH
Q 017133 115 TKTIWIGDLFHWMDET--------FLHNCFSH--TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~--------~l~~~f~~--~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 175 (376)
-+.+|+.+.....+.+ ++..+|.. .+++..+...++.....++|-.|++|+....+.++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4567777777655544 89999988 6788888888887677888999999999999998874
No 305
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=22.86 E-value=3.7e+02 Score=20.94 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecC
Q 017133 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (376)
Q Consensus 222 ~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 287 (376)
|.+|+..| -|.-+..+.+.... ....+-++-+.+..- ..++..|.++.+.+++|+|....
T Consensus 2 e~~lkAa~--l~nf~~f~~WP~~~---~~~~~~icv~g~~~~-~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 2 EYQLKAAY--LYNFAKFIEWPDSA---PSSPFRICVLGDDPF-AEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred HHHHHHHH--HHHhHhhccCCCCC---CCCCeEEEEECChHH-HHHHHHhhhcccCCCcEEEEECC
Confidence 45666655 33333444444331 223355666666654 45677889999999999998774
No 306
>PF14480 DNA_pol3_a_NI: DNA polymerase III polC-type N-terminus I
Probab=22.52 E-value=1.8e+02 Score=19.64 Aligned_cols=33 Identities=18% Similarity=0.082 Sum_probs=24.5
Q ss_pred CHHHHHhhhccCCCeEEEEeeCCCeEEEEEeecC
Q 017133 340 SDEDLREPFSQFGEILSVKIPVGKGCGFVQFANR 373 (376)
Q Consensus 340 t~~~L~~~F~~~G~i~~~~i~~~~g~afV~F~~~ 373 (376)
+++.+..+|+. |.|+.|.+.+.++...+.+.++
T Consensus 13 ~~~~~~~~f~~-~~I~kv~v~k~~~~w~f~l~~~ 45 (76)
T PF14480_consen 13 PDELDNPLFED-AEIEKVTVHKKSRKWRFHLSSP 45 (76)
T ss_pred Cchhhhhhhcc-cEEEEEEEEccCCEEEEEEEeC
Confidence 33445778887 5999999999877777777654
No 307
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=22.20 E-value=2e+02 Score=28.73 Aligned_cols=73 Identities=15% Similarity=0.141 Sum_probs=53.7
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
.+|++.+-...-+..-+...+ ..++.+....++..-..+...+-++++|.....+..|. .|-++.+..+.+.+
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s-~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHS-EKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLKS 584 (681)
T ss_pred CceecccccccCCCcchhhCc-ccccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccccccceec
Confidence 367777776666777777778 48888888888877776776778999999998887775 45666655554443
No 308
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=21.01 E-value=1.3e+02 Score=26.36 Aligned_cols=28 Identities=7% Similarity=-0.007 Sum_probs=23.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCc
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHTGQV 142 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~G~v 142 (376)
.....|+|||+.++..-|..++...-.+
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~ 122 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFII 122 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCcc
Confidence 4577899999999999999999875444
No 309
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=20.93 E-value=2.8e+02 Score=27.95 Aligned_cols=85 Identities=12% Similarity=0.246 Sum_probs=54.0
Q ss_pred eEEEEecCHHHHHHHHHHhcCCcCCCC---------CCcccccccccCCCCC-----ccCCCCCceEEECCCCCCCcHHH
Q 017133 159 YGFVEFYSRAAAEKVLQSYSGSLMPNT---------DQPFRLNWATFSGSDR-----RTEACSDLSIFVGDLAPDVTDSI 224 (376)
Q Consensus 159 ~afV~f~~~~~a~~a~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~-----~~~~~~~~~l~v~nlp~~~t~~~ 224 (376)
.||+.+.+.+.-+...+.|+...+... +.+|..+...+..... +.+...+..+|+-++..++.++.
T Consensus 238 ~c~~t~t~~~t~~ii~~~~~~s~~~~g~i~~~gpRYCpsiE~k~~rf~~~~~h~v~lepeg~~~~~~y~~G~stslp~~~ 317 (618)
T PRK05192 238 PCYITYTNEETHEIIRENLHRSPMYSGVIEGVGPRYCPSIEDKIVRFADKDRHQIFLEPEGLDTNEVYPNGISTSLPEDV 317 (618)
T ss_pred eCCCCcCcHHHHHHHHhhcccccCcCcccCCCCCCCCCCHHHHhhhcCCCCCceEEEecCCCCCCEEeccCccCCCCHHH
Confidence 367777777755555555665433211 2223222222222221 14455677899999999999999
Q ss_pred HHHHHhhhCCCeeEEEEEec
Q 017133 225 LQETFSSKYPSVKGAKVIID 244 (376)
Q Consensus 225 l~~~F~~~~g~i~~v~i~~~ 244 (376)
=.++| +....++.++|++.
T Consensus 318 Q~~~~-r~ipGle~a~i~r~ 336 (618)
T PRK05192 318 QLEML-RSIPGLENAEILRP 336 (618)
T ss_pred HHHHH-hcCcCccceeEeec
Confidence 99999 48888999988764
No 310
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=20.62 E-value=3.4e+02 Score=21.45 Aligned_cols=51 Identities=10% Similarity=0.233 Sum_probs=33.4
Q ss_pred CCCCCCcHHHHHHHHhhhCCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Q 017133 215 DLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAM 268 (376)
Q Consensus 215 nlp~~~t~~~l~~~F~~~~g~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al 268 (376)
-++...+..+|++.+.+.|+- |..|..+..+. | .--|||++....+|....
T Consensus 88 ~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g--~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 88 IVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-G--LKKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-C--ceEEEEEECCCCcHHHHH
Confidence 367788999999999645653 45555544322 2 225999998877765543
No 311
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=20.26 E-value=7.3e+02 Score=23.33 Aligned_cols=36 Identities=14% Similarity=0.248 Sum_probs=29.9
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceec--CcceEEeecCC
Q 017133 253 YGFVRFGDENERSRAMTEMNGVYCS--SRPMRIDVATP 288 (376)
Q Consensus 253 ~afV~f~~~~~A~~Al~~l~g~~~~--g~~i~v~~~~~ 288 (376)
||.|++.+.+.+......|+|..+. +..+-++|...
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD 297 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPD 297 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccccceeeeeecCC
Confidence 8999999999999999999998875 45566666643
No 312
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=20.24 E-value=4.1e+02 Score=20.44 Aligned_cols=69 Identities=6% Similarity=0.076 Sum_probs=42.8
Q ss_pred eEEECCCCCC---CcHHHHHHHHhhhCC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 210 SIFVGDLAPD---VTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 210 ~l~v~nlp~~---~t~~~l~~~F~~~~g-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
.|.|+..... .+...+.+.+. .-| .++++.. +. +...|+|++.++-.+|.+.|....=++-.|.+..
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~-~~gI~~ksi~~--~~------~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl 107 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLD-ANGIHIKSITP--EN------DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQD 107 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHH-HCCCCcceEEe--eC------CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 5666655332 56678888885 444 3444433 21 2589999999999999887765443444555554
Q ss_pred cC
Q 017133 286 AT 287 (376)
Q Consensus 286 ~~ 287 (376)
+.
T Consensus 108 ~p 109 (127)
T PRK10629 108 DN 109 (127)
T ss_pred CC
Confidence 43
Done!