Query 017133
Match_columns 376
No_of_seqs 294 out of 2914
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 09:28:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.4E-42 4.7E-47 310.1 23.8 214 113-376 20-239 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 2E-41 6.8E-46 303.9 21.8 222 111-376 37-267 (292)
3 4f02_A Polyadenylate-binding p 100.0 7E-36 2.4E-40 254.8 18.0 172 112-291 12-183 (213)
4 3md3_A Nuclear and cytoplasmic 100.0 2E-34 6.8E-39 236.3 20.1 166 116-288 1-166 (166)
5 1l3k_A Heterogeneous nuclear r 100.0 3.3E-34 1.1E-38 241.7 19.9 177 111-292 9-186 (196)
6 1b7f_A Protein (SXL-lethal pro 100.0 4.9E-34 1.7E-38 234.5 20.1 165 114-286 2-168 (168)
7 2qfj_A FBP-interacting repress 100.0 4.6E-34 1.6E-38 244.6 19.9 176 113-291 26-207 (216)
8 1fxl_A Paraneoplastic encephal 100.0 1E-33 3.4E-38 232.3 20.5 164 115-286 2-167 (167)
9 3nmr_A Cugbp ELAV-like family 100.0 3.9E-33 1.3E-37 230.6 21.1 168 114-287 2-175 (175)
10 2cjk_A Nuclear polyadenylated 100.0 6.2E-34 2.1E-38 233.7 13.4 165 114-289 2-166 (167)
11 2g4b_A Splicing factor U2AF 65 100.0 2.1E-31 7.3E-36 219.6 18.3 160 113-287 2-172 (172)
12 1fje_B Nucleolin RBD12, protei 100.0 2.4E-32 8.2E-37 226.0 12.6 166 111-289 9-174 (175)
13 3smz_A Protein raver-1, ribonu 100.0 5.2E-31 1.8E-35 235.1 20.9 173 114-292 94-267 (284)
14 3tyt_A Heterogeneous nuclear r 100.0 3E-31 1E-35 223.7 17.5 163 114-286 3-204 (205)
15 2yh0_A Splicing factor U2AF 65 100.0 5.4E-31 1.8E-35 222.3 18.3 169 113-291 2-196 (198)
16 3pgw_A U1-A; protein-RNA compl 100.0 1.6E-30 5.6E-35 231.6 21.1 166 111-287 5-281 (282)
17 2ghp_A U4/U6 snRNA-associated 100.0 8.3E-31 2.8E-35 234.7 17.1 171 114-289 116-291 (292)
18 2adc_A Polypyrimidine tract-bi 100.0 4.3E-30 1.5E-34 221.5 20.4 165 112-289 31-228 (229)
19 1qm9_A Polypyrimidine tract-bi 100.0 4.2E-30 1.5E-34 216.8 17.3 162 115-289 3-197 (198)
20 3sde_A Paraspeckle component 1 100.0 1.6E-29 5.5E-34 222.2 19.5 159 111-290 18-180 (261)
21 4f02_A Polyadenylate-binding p 100.0 6.1E-30 2.1E-34 218.0 14.8 140 206-376 13-156 (213)
22 1l3k_A Heterogeneous nuclear r 100.0 2.3E-29 7.9E-34 211.9 15.6 145 204-376 9-159 (196)
23 1b7f_A Protein (SXL-lethal pro 100.0 2.9E-29 9.8E-34 205.9 15.5 137 207-376 2-144 (168)
24 1fxl_A Paraneoplastic encephal 100.0 4.9E-29 1.7E-33 204.3 16.6 136 208-376 2-143 (167)
25 3md3_A Nuclear and cytoplasmic 100.0 1.5E-28 5E-33 201.3 15.1 136 209-376 1-142 (166)
26 3nmr_A Cugbp ELAV-like family 100.0 2.3E-28 8E-33 201.8 14.7 138 207-376 2-149 (175)
27 3tyt_A Heterogeneous nuclear r 100.0 1.3E-28 4.3E-33 207.6 12.9 164 207-376 3-178 (205)
28 2qfj_A FBP-interacting repress 100.0 3.2E-28 1.1E-32 208.2 15.2 148 207-376 27-180 (216)
29 2adc_A Polypyrimidine tract-bi 100.0 1.3E-27 4.3E-32 206.0 15.6 167 204-376 30-202 (229)
30 3pgw_A U1-A; protein-RNA compl 100.0 3.7E-27 1.3E-31 209.9 18.4 168 205-376 6-257 (282)
31 2cjk_A Nuclear polyadenylated 99.9 2.4E-28 8.3E-33 200.2 9.5 135 207-376 2-142 (167)
32 1qm9_A Polypyrimidine tract-bi 99.9 2.4E-27 8.3E-32 199.8 12.1 163 208-376 3-171 (198)
33 2yh0_A Splicing factor U2AF 65 99.9 8.5E-26 2.9E-30 190.3 16.1 150 207-376 3-169 (198)
34 2g4b_A Splicing factor U2AF 65 99.9 4.8E-26 1.6E-30 187.4 14.1 130 207-376 3-149 (172)
35 3sde_A Paraspeckle component 1 99.9 4.5E-26 1.6E-30 200.2 14.4 128 204-376 18-150 (261)
36 1fje_B Nucleolin RBD12, protei 99.9 5.9E-27 2E-31 193.5 7.4 139 204-376 9-149 (175)
37 2kn4_A Immunoglobulin G-bindin 99.9 8.5E-24 2.9E-28 171.3 15.0 146 144-292 2-153 (158)
38 4f25_A Polyadenylate-binding p 99.9 9.3E-23 3.2E-27 155.6 10.8 109 208-343 5-113 (115)
39 2i2y_A Fusion protein consists 99.9 5.5E-22 1.9E-26 159.0 10.4 128 154-290 10-149 (150)
40 4fxv_A ELAV-like protein 1; RN 99.9 2.3E-21 7.7E-26 143.3 11.3 81 207-288 18-98 (99)
41 4f25_A Polyadenylate-binding p 99.8 2.7E-21 9.2E-26 147.4 9.2 107 114-224 4-113 (115)
42 3s8s_A Histone-lysine N-methyl 99.8 4.4E-20 1.5E-24 139.0 12.0 85 206-291 4-88 (110)
43 2lea_A Serine/arginine-rich sp 99.8 6.9E-21 2.4E-25 149.2 7.7 126 158-292 5-130 (135)
44 2lxi_A RNA-binding protein 10; 99.8 9.1E-21 3.1E-25 137.9 6.3 84 208-292 1-86 (91)
45 3md1_A Nuclear and cytoplasmic 99.8 2.3E-19 7.7E-24 128.5 11.7 82 208-290 1-82 (83)
46 4fxv_A ELAV-like protein 1; RN 99.8 9.8E-20 3.3E-24 134.5 9.7 82 113-196 17-98 (99)
47 3bs9_A Nucleolysin TIA-1 isofo 99.8 2E-19 6.7E-24 130.0 10.9 83 206-289 4-86 (87)
48 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.4E-19 4.6E-24 147.3 11.0 130 162-292 11-155 (165)
49 2lkz_A RNA-binding protein 5; 99.8 4.1E-20 1.4E-24 134.9 6.8 81 207-288 8-94 (95)
50 3lqv_A PRE-mRNA branch site pr 99.8 5.9E-20 2E-24 140.2 8.0 104 206-353 6-109 (115)
51 2cq0_A Eukaryotic translation 99.8 3.1E-19 1E-23 133.4 11.7 89 203-292 10-98 (103)
52 2dnz_A Probable RNA-binding pr 99.8 4.2E-19 1.5E-23 130.5 11.8 86 206-292 3-88 (95)
53 2jrs_A RNA-binding protein 39; 99.8 6.1E-19 2.1E-23 132.6 12.9 88 202-290 20-107 (108)
54 2x1f_A MRNA 3'-END-processing 99.8 3E-19 1E-23 131.6 11.0 85 207-292 1-85 (96)
55 2do4_A Squamous cell carcinoma 99.8 6.9E-19 2.4E-23 130.7 13.0 86 204-291 13-98 (100)
56 2cqc_A Arginine/serine-rich sp 99.8 5E-19 1.7E-23 130.2 12.0 85 203-288 10-94 (95)
57 2dgo_A Cytotoxic granule-assoc 99.8 6.5E-19 2.2E-23 134.4 13.0 89 203-292 10-98 (115)
58 1whw_A Hypothetical protein ri 99.8 4E-19 1.4E-23 131.7 11.3 86 206-292 6-91 (99)
59 2cpz_A CUG triplet repeat RNA- 99.8 4.7E-19 1.6E-23 135.2 11.6 88 204-292 21-108 (115)
60 1u6f_A Tcubp1, RNA-binding pro 99.8 6.9E-19 2.4E-23 139.0 13.0 87 111-199 38-124 (139)
61 2dgs_A DAZ-associated protein 99.8 6.1E-19 2.1E-23 130.7 11.9 86 205-292 7-92 (99)
62 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.3E-19 1.1E-23 128.2 10.0 81 206-287 5-85 (85)
63 1x5u_A Splicing factor 3B subu 99.8 5E-19 1.7E-23 132.7 11.3 89 203-292 10-98 (105)
64 2dnm_A SRP46 splicing factor; 99.8 3.4E-19 1.2E-23 133.1 10.0 89 203-292 8-96 (103)
65 3p5t_L Cleavage and polyadenyl 99.8 1.2E-19 3.9E-24 132.0 7.1 82 209-291 2-85 (90)
66 2la6_A RNA-binding protein FUS 99.8 9.4E-19 3.2E-23 129.7 12.1 83 204-287 9-99 (99)
67 2e5h_A Zinc finger CCHC-type a 99.8 6.6E-19 2.3E-23 129.2 11.1 83 204-287 12-94 (94)
68 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.4E-19 1.5E-23 132.3 10.1 87 205-292 9-95 (102)
69 1p27_B RNA-binding protein 8A; 99.8 6.9E-19 2.4E-23 132.2 11.3 85 205-290 20-104 (106)
70 2kxn_B Transformer-2 protein h 99.8 5.5E-19 1.9E-23 137.1 10.8 87 203-290 41-127 (129)
71 1x5t_A Splicing factor 3B subu 99.8 4.5E-19 1.6E-23 130.7 9.6 86 206-292 3-89 (96)
72 2dnh_A Bruno-like 5, RNA bindi 99.8 1.6E-18 5.4E-23 130.0 12.7 86 205-292 12-100 (105)
73 1x5s_A Cold-inducible RNA-bind 99.8 6.6E-19 2.3E-23 131.3 10.2 87 205-292 9-95 (102)
74 2d9p_A Polyadenylate-binding p 99.8 1.2E-18 4.2E-23 130.0 11.6 87 203-292 10-96 (103)
75 1x4h_A RNA-binding protein 28; 99.8 1.2E-18 3.9E-23 132.1 11.6 88 204-292 11-104 (111)
76 2div_A TRNA selenocysteine ass 99.8 1.3E-18 4.3E-23 129.0 11.5 85 206-291 7-96 (99)
77 2cpf_A RNA binding motif prote 99.8 7.8E-19 2.7E-23 129.9 10.4 86 206-292 3-91 (98)
78 2cph_A RNA binding motif prote 99.8 1.3E-18 4.6E-23 130.9 11.6 88 204-292 11-100 (107)
79 3ns6_A Eukaryotic translation 99.8 1.7E-19 5.7E-24 133.8 6.3 83 207-290 5-94 (100)
80 1oo0_B CG8781-PA, drosophila Y 99.8 9.3E-19 3.2E-23 132.4 10.4 87 204-291 22-108 (110)
81 2dgp_A Bruno-like 4, RNA bindi 99.8 1E-18 3.5E-23 131.2 10.5 88 204-292 9-99 (106)
82 1u6f_A Tcubp1, RNA-binding pro 99.8 1.6E-18 5.6E-23 136.9 11.9 88 204-292 38-125 (139)
83 2fy1_A RNA-binding motif prote 99.8 1.5E-18 5.2E-23 132.2 11.2 86 205-292 4-89 (116)
84 2dng_A Eukaryotic translation 99.8 2.4E-18 8.1E-23 128.5 12.0 86 204-292 11-96 (103)
85 2dhg_A TRNA selenocysteine ass 99.8 1.5E-18 5E-23 129.9 10.5 86 205-292 6-93 (104)
86 2hvz_A Splicing factor, argini 99.8 6.8E-19 2.3E-23 131.0 8.4 78 209-292 1-78 (101)
87 2khc_A Testis-specific RNP-typ 99.8 1E-18 3.5E-23 133.9 9.7 84 203-287 35-118 (118)
88 4a8x_A RNA-binding protein wit 99.8 1.3E-18 4.4E-23 126.0 9.5 83 207-290 3-86 (88)
89 2ywk_A Putative RNA-binding pr 99.8 2.2E-18 7.5E-23 126.7 10.6 83 204-288 12-94 (95)
90 3n9u_C Cleavage and polyadenyl 99.8 1.3E-18 4.5E-23 139.4 10.1 85 207-292 54-140 (156)
91 2cpe_A RNA-binding protein EWS 99.8 2.2E-18 7.5E-23 131.0 10.7 88 204-292 11-106 (113)
92 1sjq_A Polypyrimidine tract-bi 99.8 1.5E-18 5.2E-23 127.7 9.4 81 205-292 13-95 (105)
93 2cqp_A RNA-binding protein 12; 99.8 1.6E-18 5.5E-23 128.2 9.6 84 205-289 12-95 (98)
94 1wi8_A EIF-4B, eukaryotic tran 99.8 2.3E-18 7.9E-23 128.8 10.5 85 205-292 12-97 (104)
95 3ucg_A Polyadenylate-binding p 99.8 2.7E-18 9.2E-23 124.6 10.5 80 208-289 6-85 (89)
96 2dgw_A Probable RNA-binding pr 99.8 4.6E-18 1.6E-22 123.8 11.8 82 205-290 7-88 (91)
97 2cq3_A RNA-binding protein 9; 99.8 7.3E-18 2.5E-22 125.8 13.0 87 203-292 10-96 (103)
98 3s7r_A Heterogeneous nuclear r 99.8 3.8E-18 1.3E-22 123.2 11.0 80 205-286 8-87 (87)
99 3ulh_A THO complex subunit 4; 99.8 4.2E-18 1.4E-22 128.1 11.7 82 204-287 25-106 (107)
100 2dgv_A HnRNP M, heterogeneous 99.8 4.8E-18 1.7E-22 124.0 11.5 83 206-291 6-88 (92)
101 3s8s_A Histone-lysine N-methyl 99.8 2.4E-18 8.3E-23 129.4 10.0 81 113-195 4-84 (110)
102 1p1t_A Cleavage stimulation fa 99.8 2.3E-18 7.7E-23 128.9 9.7 85 207-292 7-91 (104)
103 2cqi_A Nucleolysin TIAR; RNA r 99.8 7E-18 2.4E-22 125.9 12.3 86 204-292 11-96 (103)
104 2dh8_A DAZ-associated protein 99.8 2.6E-18 9E-23 128.7 10.0 87 204-292 12-98 (105)
105 2dgo_A Cytotoxic granule-assoc 99.8 7.4E-18 2.5E-22 128.5 12.6 90 109-200 9-98 (115)
106 1x5u_A Splicing factor 3B subu 99.8 7.3E-18 2.5E-22 126.3 12.4 87 111-199 11-97 (105)
107 2cqd_A RNA-binding region cont 99.8 4.5E-18 1.5E-22 129.9 11.3 87 203-291 12-98 (116)
108 2kt5_A RNA and export factor-b 99.8 1.2E-17 4E-22 129.1 13.6 87 203-291 30-116 (124)
109 2do0_A HnRNP M, heterogeneous 99.8 9.5E-18 3.2E-22 127.7 12.7 86 205-292 12-97 (114)
110 1s79_A Lupus LA protein; RRM, 99.8 3E-18 1E-22 127.3 9.6 80 206-288 9-88 (103)
111 2wbr_A GW182, gawky, LD47780P; 99.8 2.8E-18 9.4E-23 120.2 8.7 74 207-287 6-79 (89)
112 2lxi_A RNA-binding protein 10; 99.8 6.1E-19 2.1E-23 128.2 5.7 83 115-199 1-85 (91)
113 3r27_A HnRNP L, heterogeneous 99.8 3.2E-18 1.1E-22 124.7 9.4 80 204-290 17-98 (100)
114 2m2b_A RNA-binding protein 10; 99.8 1E-18 3.5E-23 136.3 7.2 87 204-292 19-111 (131)
115 2ek1_A RNA-binding protein 12; 99.8 1.7E-18 5.8E-23 127.3 7.7 81 207-288 14-94 (95)
116 2rs2_A Musashi-1, RNA-binding 99.8 4.2E-18 1.4E-22 128.2 10.0 87 204-292 21-107 (109)
117 1h2v_Z 20 kDa nuclear CAP bind 99.8 7.8E-18 2.7E-22 135.7 12.3 88 204-292 35-122 (156)
118 2khc_A Testis-specific RNP-typ 99.8 6.5E-18 2.2E-22 129.4 11.2 83 110-194 35-117 (118)
119 2dgx_A KIAA0430 protein; RRM d 99.8 5.9E-18 2E-22 124.5 10.6 82 206-291 7-92 (96)
120 2mss_A Protein (musashi1); RNA 99.8 1.6E-18 5.6E-23 121.4 7.0 75 210-286 1-75 (75)
121 3ex7_B RNA-binding protein 8A; 99.7 4.4E-18 1.5E-22 132.0 10.1 87 205-292 19-105 (126)
122 2dnh_A Bruno-like 5, RNA bindi 99.7 1.6E-17 5.6E-22 124.4 13.0 88 111-199 11-99 (105)
123 1x4e_A RNA binding motif, sing 99.7 9.4E-19 3.2E-23 125.8 5.9 81 206-287 3-83 (85)
124 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.6E-18 5.4E-23 128.6 7.1 84 204-290 15-99 (100)
125 2cq0_A Eukaryotic translation 99.7 6.1E-18 2.1E-22 126.2 10.3 87 110-198 10-96 (103)
126 1x4a_A Splicing factor, argini 99.7 1.1E-17 3.9E-22 126.1 11.6 85 204-292 18-102 (109)
127 2cqg_A TDP-43, TAR DNA-binding 99.7 1.6E-17 5.6E-22 123.9 12.3 87 203-292 10-96 (103)
128 1x5o_A RNA binding motif, sing 99.7 1.8E-17 6.1E-22 126.1 12.8 83 205-289 22-112 (114)
129 2cqc_A Arginine/serine-rich sp 99.7 6.6E-18 2.3E-22 124.1 10.0 84 110-195 10-93 (95)
130 2e5h_A Zinc finger CCHC-type a 99.7 6.2E-18 2.1E-22 124.0 9.8 82 111-194 12-93 (94)
131 2err_A Ataxin-2-binding protei 99.7 5.2E-18 1.8E-22 127.8 9.6 85 202-289 23-107 (109)
132 2ad9_A Polypyrimidine tract-bi 99.7 8.7E-18 3E-22 126.9 10.5 81 205-292 28-110 (119)
133 1x5s_A Cold-inducible RNA-bind 99.7 1.6E-17 5.6E-22 123.7 11.9 87 111-199 8-94 (102)
134 2dgp_A Bruno-like 4, RNA bindi 99.7 1.6E-17 5.3E-22 124.7 11.9 89 111-199 9-98 (106)
135 2cpz_A CUG triplet repeat RNA- 99.7 1.6E-17 5.5E-22 126.6 12.0 87 111-199 21-107 (115)
136 2dnz_A Probable RNA-binding pr 99.7 1.8E-17 6.3E-22 121.7 11.8 84 113-198 3-86 (95)
137 1x4b_A Heterogeneous nuclear r 99.7 6.1E-18 2.1E-22 129.1 9.4 85 206-292 25-109 (116)
138 2cph_A RNA binding motif prote 99.7 2E-17 6.9E-22 124.3 12.1 87 110-198 10-98 (107)
139 2cpi_A CCR4-NOT transcription 99.7 7.4E-18 2.5E-22 127.5 9.7 85 206-291 13-103 (111)
140 2la6_A RNA-binding protein FUS 99.7 1.8E-17 6.3E-22 122.6 11.7 82 111-194 9-98 (99)
141 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.8E-17 9.6E-22 130.0 13.5 83 203-286 58-140 (140)
142 2cq1_A PTB-like protein L; RRM 99.7 1.6E-17 5.4E-22 122.5 11.1 83 203-292 10-94 (101)
143 2hvz_A Splicing factor, argini 99.7 6.6E-18 2.3E-22 125.6 9.2 95 116-217 1-100 (101)
144 2dnm_A SRP46 splicing factor; 99.7 1.3E-17 4.5E-22 124.4 10.9 86 111-198 9-94 (103)
145 3bs9_A Nucleolysin TIA-1 isofo 99.7 7.8E-18 2.7E-22 121.6 9.2 82 113-196 4-85 (87)
146 2dgs_A DAZ-associated protein 99.7 2.7E-17 9.3E-22 121.7 12.4 86 111-199 6-91 (99)
147 2do4_A Squamous cell carcinoma 99.7 2E-17 6.9E-22 122.7 11.6 84 111-197 13-96 (100)
148 3pgw_S U1-70K; protein-RNA com 99.7 1E-18 3.5E-23 163.2 5.6 87 205-292 99-185 (437)
149 3p5t_L Cleavage and polyadenyl 99.7 4.2E-18 1.4E-22 123.7 7.6 80 116-197 2-83 (90)
150 2dis_A Unnamed protein product 99.7 8E-18 2.7E-22 127.0 9.4 85 207-292 7-95 (109)
151 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.1E-18 1.1E-22 120.6 6.6 76 209-286 1-76 (77)
152 2cq4_A RNA binding motif prote 99.7 6.3E-18 2.2E-22 128.6 8.8 82 207-290 24-105 (114)
153 2d9p_A Polyadenylate-binding p 99.7 2.9E-17 9.8E-22 122.6 12.2 87 109-199 9-95 (103)
154 2div_A TRNA selenocysteine ass 99.7 2.1E-17 7.2E-22 122.4 11.2 87 111-197 5-94 (99)
155 2kxn_B Transformer-2 protein h 99.7 1.8E-17 6.2E-22 128.5 11.4 84 111-196 42-125 (129)
156 2lkz_A RNA-binding protein 5; 99.7 3E-18 1E-22 125.0 6.4 84 112-195 6-93 (95)
157 2ki2_A SS-DNA binding protein 99.7 1.4E-18 4.8E-23 126.3 4.6 81 209-291 2-82 (90)
158 1x4h_A RNA-binding protein 28; 99.7 2.8E-17 9.6E-22 124.4 12.1 86 111-198 11-102 (111)
159 1wex_A Hypothetical protein (r 99.7 1.7E-17 5.7E-22 123.2 10.4 82 204-292 11-94 (104)
160 1whw_A Hypothetical protein ri 99.7 2.2E-17 7.5E-22 122.3 11.1 86 112-199 5-90 (99)
161 1wez_A HnRNP H', FTP-3, hetero 99.7 9.4E-18 3.2E-22 124.5 9.0 82 205-290 12-93 (102)
162 2jwn_A Embryonic polyadenylate 99.7 1.5E-17 5.1E-22 128.6 10.5 83 207-291 35-117 (124)
163 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.2E-17 4E-22 120.0 9.0 81 112-194 4-84 (85)
164 1x4d_A Matrin 3; structural ge 99.7 5.7E-18 1.9E-22 124.7 7.4 80 205-291 12-94 (102)
165 2nlw_A Eukaryotic translation 99.7 1.1E-17 3.7E-22 125.2 9.2 84 205-291 12-102 (105)
166 2jrs_A RNA-binding protein 39; 99.7 3.1E-17 1E-21 123.2 11.6 85 110-196 21-105 (108)
167 1wg5_A Heterogeneous nuclear r 99.7 1.4E-17 4.9E-22 124.3 9.6 83 205-290 12-95 (104)
168 3md1_A Nuclear and cytoplasmic 99.7 1.7E-17 5.8E-22 118.6 9.6 80 115-196 1-80 (83)
169 3lqv_A PRE-mRNA branch site pr 99.7 8.9E-18 3E-22 128.0 8.6 106 111-235 4-109 (115)
170 2cqd_A RNA-binding region cont 99.7 3.3E-17 1.1E-21 125.0 11.7 87 109-198 11-97 (116)
171 2fc8_A NCL protein; structure 99.7 2.8E-17 9.6E-22 122.4 11.1 86 203-292 10-95 (102)
172 2hgl_A HNRPF protein, heteroge 99.7 8.8E-18 3E-22 130.8 8.6 82 205-289 41-125 (136)
173 1sjq_A Polypyrimidine tract-bi 99.7 2.4E-17 8.1E-22 121.4 10.3 81 112-200 13-95 (105)
174 2dh8_A DAZ-associated protein 99.7 1.9E-17 6.5E-22 124.0 9.9 87 110-199 11-97 (105)
175 2a3j_A U1 small nuclear ribonu 99.7 1.9E-17 6.3E-22 127.5 10.1 83 205-291 26-112 (127)
176 1p27_B RNA-binding protein 8A; 99.7 3.6E-17 1.2E-21 122.7 11.3 84 112-197 20-103 (106)
177 2dnn_A RNA-binding protein 12; 99.7 1.6E-17 5.3E-22 124.4 9.2 78 207-288 15-92 (109)
178 2cpy_A RNA-binding protein 12; 99.7 7.4E-18 2.5E-22 128.1 7.5 83 205-290 12-95 (114)
179 2db1_A Heterogeneous nuclear r 99.7 1.3E-17 4.3E-22 127.5 8.7 82 205-289 14-98 (118)
180 2dhg_A TRNA selenocysteine ass 99.7 8.1E-17 2.8E-21 120.3 13.0 85 111-198 5-91 (104)
181 2m2b_A RNA-binding protein 10; 99.7 2.4E-17 8.1E-22 128.6 10.5 84 111-197 19-108 (131)
182 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.4E-17 4.9E-22 124.0 8.8 87 111-199 8-94 (102)
183 2dng_A Eukaryotic translation 99.7 3.1E-17 1.1E-21 122.3 10.6 85 110-198 10-94 (103)
184 2dnq_A RNA-binding protein 4B; 99.7 4.3E-17 1.5E-21 118.4 10.9 79 205-292 5-83 (90)
185 2i2y_A Fusion protein consists 99.7 5.2E-18 1.8E-22 135.7 6.5 112 248-376 10-123 (150)
186 2fy1_A RNA-binding motif prote 99.7 6.4E-17 2.2E-21 123.1 12.2 84 112-198 4-87 (116)
187 2fc9_A NCL protein; structure 99.7 3E-17 1E-21 122.0 10.1 84 204-292 11-94 (101)
188 2cpx_A Hypothetical protein FL 99.7 8.3E-18 2.9E-22 128.2 7.2 87 205-292 22-108 (115)
189 2x1f_A MRNA 3'-END-processing 99.7 2.4E-17 8.2E-22 121.3 9.4 83 114-198 1-83 (96)
190 1x5t_A Splicing factor 3B subu 99.7 2.2E-17 7.5E-22 121.6 9.0 85 113-199 3-88 (96)
191 1why_A Hypothetical protein ri 99.7 3.9E-17 1.3E-21 120.4 10.3 79 206-291 15-95 (97)
192 1wi8_A EIF-4B, eukaryotic tran 99.7 3.4E-17 1.2E-21 122.4 10.2 85 111-199 11-96 (104)
193 2ywk_A Putative RNA-binding pr 99.7 2.1E-17 7.3E-22 121.4 8.8 82 111-195 12-93 (95)
194 3ns6_A Eukaryotic translation 99.7 1E-17 3.4E-22 124.1 7.0 81 113-195 4-91 (100)
195 2cqp_A RNA-binding protein 12; 99.7 1.8E-17 6.3E-22 122.4 8.3 84 111-196 11-94 (98)
196 2hgn_A Heterogeneous nuclear r 99.7 4.2E-18 1.4E-22 133.1 5.0 83 205-291 43-125 (139)
197 2cqi_A Nucleolysin TIAR; RNA r 99.7 9E-17 3.1E-21 119.9 11.9 86 110-199 10-95 (103)
198 2cpe_A RNA-binding protein EWS 99.7 4.5E-17 1.5E-21 123.7 10.4 87 111-199 11-105 (113)
199 1wel_A RNA-binding protein 12; 99.7 1.1E-17 3.6E-22 129.3 7.0 84 205-290 22-105 (124)
200 2krb_A Eukaryotic translation 99.7 1.1E-17 3.6E-22 119.0 6.5 73 209-284 2-81 (81)
201 2la4_A Nuclear and cytoplasmic 99.7 3.2E-17 1.1E-21 121.8 9.3 76 207-289 26-101 (101)
202 1x4c_A Splicing factor, argini 99.7 7.7E-17 2.6E-21 121.2 11.5 79 206-292 13-96 (108)
203 2e5j_A Methenyltetrahydrofolat 99.7 6.8E-17 2.3E-21 119.0 11.0 80 205-290 16-95 (97)
204 2cpj_A Non-POU domain-containi 99.7 5E-17 1.7E-21 120.3 10.3 82 204-292 11-92 (99)
205 1x4e_A RNA binding motif, sing 99.7 1.5E-17 5E-22 119.5 7.2 80 113-194 3-82 (85)
206 2cpf_A RNA binding motif prote 99.7 3.9E-17 1.3E-21 120.7 9.6 85 113-199 3-90 (98)
207 2jvo_A Nucleolar protein 3; nu 99.7 5.7E-17 1.9E-21 121.7 10.6 80 203-291 26-105 (108)
208 1s79_A Lupus LA protein; RRM, 99.7 5E-17 1.7E-21 120.6 10.2 81 111-195 7-87 (103)
209 3q2s_C Cleavage and polyadenyl 99.7 2.1E-17 7.1E-22 141.2 9.2 83 207-290 67-151 (229)
210 2cq3_A RNA-binding protein 9; 99.7 1.3E-16 4.5E-21 118.9 12.5 86 110-199 10-95 (103)
211 2dgt_A RNA-binding protein 30; 99.7 9.3E-17 3.2E-21 117.1 11.3 80 204-292 6-85 (92)
212 2do0_A HnRNP M, heterogeneous 99.7 1.3E-16 4.4E-21 121.4 12.4 84 111-197 11-94 (114)
213 1x4f_A Matrin 3; structural ge 99.7 2.7E-17 9.1E-22 122.8 8.2 81 205-292 22-105 (112)
214 2jvr_A Nucleolar protein 3; RN 99.7 2.9E-17 1E-21 123.1 8.4 78 207-289 27-105 (111)
215 1oo0_B CG8781-PA, drosophila Y 99.7 4.6E-17 1.6E-21 123.0 9.6 85 111-197 22-106 (110)
216 2kt5_A RNA and export factor-b 99.7 3E-16 1E-20 121.2 14.3 85 111-198 31-115 (124)
217 1fj7_A Nucleolin RBD1, protein 99.7 5E-18 1.7E-22 126.2 3.9 84 206-292 15-98 (101)
218 1wex_A Hypothetical protein (r 99.7 1.6E-16 5.6E-21 117.8 12.1 84 111-200 11-94 (104)
219 2xnq_A Nuclear polyadenylated 99.7 1E-16 3.5E-21 117.9 10.9 78 203-289 17-95 (97)
220 1iqt_A AUF1, heterogeneous nuc 99.7 1.1E-17 3.6E-22 117.2 5.3 75 210-286 1-75 (75)
221 2ytc_A PRE-mRNA-splicing facto 99.7 8.2E-17 2.8E-21 115.6 10.1 77 204-287 8-85 (85)
222 1x4g_A Nucleolysin TIAR; struc 99.7 6.8E-17 2.3E-21 121.8 10.1 81 205-292 22-102 (109)
223 2lmi_A GRSF-1, G-rich sequence 99.7 1.4E-17 4.8E-22 125.0 6.3 82 205-289 8-92 (107)
224 3s7r_A Heterogeneous nuclear r 99.7 4.3E-17 1.5E-21 117.6 8.6 80 111-193 7-86 (87)
225 3n9u_C Cleavage and polyadenyl 99.7 4.4E-17 1.5E-21 130.5 9.4 81 113-195 53-135 (156)
226 2dgv_A HnRNP M, heterogeneous 99.7 1.7E-16 5.8E-21 115.7 11.7 82 112-197 5-86 (92)
227 2cqg_A TDP-43, TAR DNA-binding 99.7 1.7E-16 5.8E-21 118.3 11.6 86 110-199 10-95 (103)
228 2cpd_A Apobec-1 stimulating pr 99.7 2.1E-16 7.2E-21 116.9 12.0 81 203-292 10-92 (99)
229 2ad9_A Polypyrimidine tract-bi 99.7 1E-16 3.5E-21 121.1 10.3 85 111-201 27-111 (119)
230 2mss_A Protein (musashi1); RNA 99.7 4.1E-17 1.4E-21 114.2 7.5 75 117-194 1-75 (75)
231 2ek1_A RNA-binding protein 12; 99.7 1.8E-17 6.1E-22 121.8 5.9 81 113-195 13-93 (95)
232 1wez_A HnRNP H', FTP-3, hetero 99.7 8.3E-17 2.8E-21 119.4 9.6 83 111-198 11-93 (102)
233 2dgu_A Heterogeneous nuclear r 99.7 1.3E-16 4.5E-21 118.9 10.5 79 205-292 8-86 (103)
234 1nu4_A U1A RNA binding domain; 99.7 3.7E-17 1.3E-21 120.5 7.4 83 205-291 5-91 (97)
235 1x4a_A Splicing factor, argini 99.7 3.2E-16 1.1E-20 118.1 12.6 85 110-199 17-101 (109)
236 1x5o_A RNA binding motif, sing 99.7 3.1E-16 1.1E-20 119.2 12.6 85 111-196 21-111 (114)
237 1wg5_A Heterogeneous nuclear r 99.7 1.2E-16 4.2E-21 119.2 10.1 82 111-196 11-93 (104)
238 2dnp_A RNA-binding protein 14; 99.7 1.4E-16 4.7E-21 115.7 10.0 79 205-292 6-84 (90)
239 1wf1_A RNA-binding protein RAL 99.7 1.6E-16 5.6E-21 119.9 10.7 96 185-291 6-102 (110)
240 1x4d_A Matrin 3; structural ge 99.7 7.4E-17 2.5E-21 118.8 8.4 81 111-197 11-92 (102)
241 2lea_A Serine/arginine-rich sp 99.7 6E-17 2.1E-21 126.7 8.5 86 111-198 43-128 (135)
242 2lcw_A RNA-binding protein FUS 99.5 2.1E-18 7.1E-23 131.7 0.0 86 206-292 5-98 (116)
243 3ex7_B RNA-binding protein 8A; 99.7 1.8E-16 6E-21 122.9 10.8 86 111-198 18-103 (126)
244 2cq1_A PTB-like protein L; RRM 99.7 1.3E-16 4.5E-21 117.5 9.6 83 111-199 11-93 (101)
245 1p1t_A Cleavage stimulation fa 99.7 1.2E-16 3.9E-21 119.5 9.4 83 113-197 6-88 (104)
246 2rs2_A Musashi-1, RNA-binding 99.7 6.9E-17 2.4E-21 121.6 8.2 85 110-197 20-104 (109)
247 3ucg_A Polyadenylate-binding p 99.7 1.2E-16 4E-21 115.9 9.1 80 114-196 5-84 (89)
248 3ulh_A THO complex subunit 4; 99.7 1.3E-16 4.6E-21 119.8 9.7 82 111-195 25-106 (107)
249 2dha_A FLJ20171 protein; RRM d 99.7 5.4E-17 1.9E-21 124.0 7.6 80 207-289 22-105 (123)
250 1fjc_A Nucleolin RBD2, protein 99.7 6.6E-17 2.3E-21 118.9 7.7 81 205-291 13-93 (96)
251 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.3E-16 4.6E-21 126.0 10.0 82 111-194 59-140 (140)
252 2f3j_A RNA and export factor b 99.7 1.3E-16 4.6E-21 130.6 10.3 85 204-290 84-168 (177)
253 1sjr_A Polypyrimidine tract-bi 99.7 2.2E-16 7.6E-21 125.3 11.1 79 207-290 45-125 (164)
254 2hgl_A HNRPF protein, heteroge 99.7 5.1E-17 1.8E-21 126.5 7.3 80 111-194 40-122 (136)
255 4a8x_A RNA-binding protein wit 99.7 9.9E-17 3.4E-21 116.0 8.4 81 114-196 3-84 (88)
256 2kvi_A Nuclear polyadenylated 99.7 1.4E-16 4.9E-21 117.0 9.2 79 205-292 7-86 (96)
257 2j8a_A Histone-lysine N-methyl 99.7 1.1E-16 3.9E-21 119.7 8.4 81 209-290 3-97 (136)
258 1whx_A Hypothetical protein ri 99.7 9.2E-17 3.1E-21 121.2 8.1 77 207-290 9-85 (111)
259 1uaw_A Mouse-musashi-1; RNP-ty 99.7 5.3E-17 1.8E-21 114.2 6.3 76 116-194 1-76 (77)
260 2j76_E EIF-4B, EIF4B, eukaryot 99.7 7.4E-17 2.5E-21 119.5 7.3 82 111-196 15-97 (100)
261 3r27_A HnRNP L, heterogeneous 99.7 1.1E-16 3.9E-21 116.4 8.1 80 111-196 17-96 (100)
262 2hgm_A HNRPF protein, heteroge 99.7 6.4E-17 2.2E-21 123.9 7.1 81 205-289 39-121 (126)
263 2dis_A Unnamed protein product 99.7 2.8E-16 9.7E-21 118.4 10.6 86 112-199 5-94 (109)
264 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.8E-16 9.5E-21 126.5 11.1 86 111-198 35-120 (156)
265 2cpy_A RNA-binding protein 12; 99.7 7.2E-17 2.5E-21 122.6 7.1 82 111-196 11-93 (114)
266 2dgw_A Probable RNA-binding pr 99.7 2.5E-16 8.5E-21 114.6 9.7 82 111-197 6-87 (91)
267 2wbr_A GW182, gawky, LD47780P; 99.7 1E-16 3.5E-21 112.3 7.2 72 114-193 6-77 (89)
268 2dgx_A KIAA0430 protein; RRM d 99.7 2.4E-16 8.2E-21 115.8 9.6 81 112-197 6-90 (96)
269 2cqh_A IGF-II mRNA-binding pro 99.7 1.2E-16 4.2E-21 116.7 7.9 79 206-292 6-86 (93)
270 2xs2_A Deleted in azoospermia- 99.7 5.4E-17 1.9E-21 120.8 6.0 81 207-291 8-88 (102)
271 2ki2_A SS-DNA binding protein 99.7 5.4E-17 1.8E-21 117.9 5.8 79 116-197 2-80 (90)
272 3zzy_A Polypyrimidine tract-bi 99.7 4.6E-16 1.6E-20 118.9 11.1 79 207-291 27-108 (130)
273 2db1_A Heterogeneous nuclear r 99.7 9.3E-17 3.2E-21 122.6 7.3 81 111-195 13-96 (118)
274 1why_A Hypothetical protein ri 99.7 8.4E-16 2.9E-20 113.2 12.2 80 112-197 14-93 (97)
275 2diu_A KIAA0430 protein; struc 99.7 3.3E-16 1.1E-20 110.7 9.3 75 207-292 7-87 (96)
276 1wg1_A KIAA1579 protein, homol 99.7 2.2E-16 7.7E-21 114.0 8.6 76 207-290 4-79 (88)
277 2e44_A Insulin-like growth fac 99.7 2.4E-16 8.3E-21 115.9 8.8 80 206-290 13-93 (96)
278 1sjr_A Polypyrimidine tract-bi 99.7 5.8E-16 2E-20 122.9 11.4 85 112-200 43-127 (164)
279 2lmi_A GRSF-1, G-rich sequence 99.7 1.5E-16 5E-21 119.4 7.5 81 111-195 7-90 (107)
280 2kn4_A Immunoglobulin G-bindin 99.7 4.7E-16 1.6E-20 125.6 11.1 86 111-198 66-151 (158)
281 1x4c_A Splicing factor, argini 99.7 7.1E-16 2.4E-20 115.9 11.2 81 112-199 12-95 (108)
282 2dnn_A RNA-binding protein 12; 99.7 1.5E-16 5.1E-21 119.0 7.3 78 112-194 13-90 (109)
283 1x5p_A Negative elongation fac 99.7 9E-16 3.1E-20 113.0 11.4 79 205-292 12-90 (97)
284 2cq4_A RNA binding motif prote 99.7 1E-16 3.6E-21 121.8 6.5 81 113-196 23-103 (114)
285 2cpi_A CCR4-NOT transcription 99.7 2.1E-16 7.2E-21 119.4 8.1 86 111-198 11-102 (111)
286 2krb_A Eukaryotic translation 99.7 2.4E-16 8.3E-21 111.9 7.9 69 115-185 1-75 (81)
287 1wel_A RNA-binding protein 12; 99.7 1.5E-16 5.1E-21 122.8 7.3 82 111-195 21-102 (124)
288 2err_A Ataxin-2-binding protei 99.7 2.6E-16 8.7E-21 118.5 8.3 83 110-196 24-106 (109)
289 2a3j_A U1 small nuclear ribonu 99.7 7.9E-16 2.7E-20 118.3 11.0 81 112-197 26-110 (127)
290 2e5g_A U6 snRNA-specific termi 99.6 6E-16 2E-20 113.2 9.7 79 207-292 7-85 (94)
291 2e5j_A Methenyltetrahydrofolat 99.6 1.5E-15 5.2E-20 111.8 11.8 79 111-196 15-93 (97)
292 3egn_A RNA-binding protein 40; 99.6 1.2E-16 4E-21 126.8 5.9 87 205-292 42-133 (143)
293 2cq2_A Hypothetical protein LO 99.6 3E-16 1E-20 117.1 7.6 78 205-289 22-106 (114)
294 2fc9_A NCL protein; structure 99.6 4.3E-16 1.5E-20 115.7 8.5 83 111-199 11-93 (101)
295 1fj7_A Nucleolin RBD1, protein 99.6 1.4E-16 4.9E-21 118.3 5.8 82 112-197 14-95 (101)
296 2fc8_A NCL protein; structure 99.6 7.7E-16 2.6E-20 114.5 9.7 85 110-199 10-94 (102)
297 1iqt_A AUF1, heterogeneous nuc 99.6 2.2E-16 7.5E-21 110.4 6.3 74 117-193 1-74 (75)
298 2pe8_A Splicing factor 45; RRM 99.6 1.4E-15 4.9E-20 112.9 11.0 83 206-289 6-94 (105)
299 2jwn_A Embryonic polyadenylate 99.6 5.6E-16 1.9E-20 119.7 9.0 81 114-197 35-115 (124)
300 2e5i_A Heterogeneous nuclear r 99.6 3.3E-15 1.1E-19 113.8 12.9 76 209-291 26-104 (124)
301 1x4b_A Heterogeneous nuclear r 99.6 4.6E-16 1.6E-20 118.6 8.2 84 113-199 25-108 (116)
302 2dnq_A RNA-binding protein 4B; 99.6 2E-15 6.9E-20 109.5 11.2 78 112-199 5-82 (90)
303 3q2s_C Cleavage and polyadenyl 99.6 3.8E-16 1.3E-20 133.3 8.5 80 114-195 67-148 (229)
304 2cpj_A Non-POU domain-containi 99.6 1.3E-15 4.4E-20 112.6 10.2 80 110-197 10-89 (99)
305 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1E-15 3.4E-20 124.3 10.0 86 112-199 69-154 (165)
306 2hgm_A HNRPF protein, heteroge 99.6 5.4E-16 1.9E-20 118.7 7.9 80 111-195 38-119 (126)
307 2hgn_A Heterogeneous nuclear r 99.6 2.5E-16 8.5E-21 123.0 6.1 82 111-197 42-123 (139)
308 2nlw_A Eukaryotic translation 99.6 5.1E-16 1.8E-20 116.0 7.5 80 112-195 12-98 (105)
309 2jvr_A Nucleolar protein 3; RN 99.6 4.5E-16 1.5E-20 116.6 7.1 80 111-196 24-104 (111)
310 1x4f_A Matrin 3; structural ge 99.6 1.1E-15 3.7E-20 114.1 9.1 80 112-197 22-102 (112)
311 3d2w_A TAR DNA-binding protein 99.6 1.4E-15 4.7E-20 109.8 8.8 77 205-291 8-86 (89)
312 2jvo_A Nucleolar protein 3; nu 99.6 1.3E-15 4.6E-20 114.1 9.0 78 110-197 26-103 (108)
313 3beg_B Splicing factor, argini 99.6 8.5E-16 2.9E-20 116.7 7.9 75 207-289 15-94 (115)
314 2ytc_A PRE-mRNA-splicing facto 99.6 2.1E-15 7.2E-20 108.1 9.5 76 111-194 8-84 (85)
315 2la4_A Nuclear and cytoplasmic 99.6 1.9E-15 6.6E-20 112.1 9.6 75 113-195 25-99 (101)
316 2cpx_A Hypothetical protein FL 99.6 6.1E-16 2.1E-20 117.8 7.0 86 112-199 22-107 (115)
317 2dgu_A Heterogeneous nuclear r 99.6 3.4E-15 1.2E-19 111.2 10.5 79 111-199 7-85 (103)
318 2dha_A FLJ20171 protein; RRM d 99.6 7.5E-16 2.6E-20 117.7 7.0 78 113-194 21-102 (123)
319 2f3j_A RNA and export factor b 99.6 1.2E-14 4E-19 119.0 14.4 83 111-196 84-166 (177)
320 1x4g_A Nucleolysin TIAR; struc 99.6 3.4E-15 1.2E-19 112.4 10.1 80 112-199 22-101 (109)
321 2e5i_A Heterogeneous nuclear r 99.6 5.3E-15 1.8E-19 112.6 11.2 80 113-198 23-103 (124)
322 3zzy_A Polypyrimidine tract-bi 99.6 1.8E-15 6.1E-20 115.6 8.4 85 113-202 26-111 (130)
323 2dnl_A Cytoplasmic polyadenyla 99.6 1.8E-15 6.2E-20 114.8 8.3 79 206-288 6-87 (114)
324 2voo_A Lupus LA protein; RNA-b 99.6 4.2E-15 1.4E-19 123.5 11.0 121 166-289 63-187 (193)
325 2e44_A Insulin-like growth fac 99.6 3.8E-15 1.3E-19 109.4 9.6 81 111-197 11-92 (96)
326 2hzc_A Splicing factor U2AF 65 99.6 2.4E-15 8E-20 108.4 8.0 71 207-285 5-86 (87)
327 2bz2_A Negative elongation fac 99.6 4.3E-15 1.5E-19 113.6 9.7 79 205-292 36-114 (121)
328 2kvi_A Nuclear polyadenylated 99.6 5E-15 1.7E-19 108.7 9.6 78 111-198 6-84 (96)
329 2lcw_A RNA-binding protein FUS 99.4 8.8E-17 3E-21 122.6 0.0 86 112-199 4-97 (116)
330 2xnq_A Nuclear polyadenylated 99.6 5.1E-15 1.7E-19 108.7 9.5 76 111-196 18-94 (97)
331 2cpd_A Apobec-1 stimulating pr 99.6 1.2E-14 3.9E-19 107.4 11.3 79 111-199 11-91 (99)
332 1nu4_A U1A RNA binding domain; 99.6 1.4E-15 4.8E-20 112.0 6.1 82 111-197 4-89 (97)
333 2j8a_A Histone-lysine N-methyl 99.6 1.3E-15 4.5E-20 113.9 5.8 76 116-193 3-92 (136)
334 2dgt_A RNA-binding protein 30; 99.6 7E-15 2.4E-19 107.0 9.5 78 111-198 6-83 (92)
335 2dnp_A RNA-binding protein 14; 99.6 9.4E-15 3.2E-19 105.9 10.0 78 111-198 5-82 (90)
336 2xs2_A Deleted in azoospermia- 99.6 1E-15 3.6E-20 113.8 4.9 79 113-196 7-85 (102)
337 1wf1_A RNA-binding protein RAL 99.6 1E-14 3.4E-19 110.0 10.2 76 112-197 24-100 (110)
338 2e5g_A U6 snRNA-specific termi 99.6 1.6E-14 5.5E-19 105.5 10.8 77 113-197 6-82 (94)
339 3d2w_A TAR DNA-binding protein 99.6 3E-15 1E-19 108.0 6.4 77 111-196 7-83 (89)
340 1whx_A Hypothetical protein ri 99.6 4E-15 1.4E-19 112.2 7.3 76 113-196 8-83 (111)
341 2dnl_A Cytoplasmic polyadenyla 99.6 6.5E-15 2.2E-19 111.7 8.2 64 113-177 6-72 (114)
342 1wf0_A TDP-43, TAR DNA-binding 99.6 2.6E-15 9.1E-20 108.3 5.7 78 207-292 4-81 (88)
343 2cqh_A IGF-II mRNA-binding pro 99.6 6.9E-15 2.4E-19 107.3 7.8 78 112-198 5-84 (93)
344 2diu_A KIAA0430 protein; struc 99.6 3.8E-14 1.3E-18 100.1 11.0 74 114-199 7-86 (96)
345 1x5p_A Negative elongation fac 99.6 2.9E-14 1E-18 104.8 10.7 78 111-198 11-88 (97)
346 1fjc_A Nucleolin RBD2, protein 99.6 3.2E-15 1.1E-19 109.8 5.3 80 111-197 12-91 (96)
347 2cq2_A Hypothetical protein LO 99.6 1.1E-14 3.9E-19 108.6 8.2 78 112-195 22-104 (114)
348 2dit_A HIV TAT specific factor 99.5 4.6E-14 1.6E-18 106.6 11.7 84 204-292 11-105 (112)
349 3v4m_A Splicing factor U2AF 65 99.5 1.6E-14 5.4E-19 107.3 8.7 83 206-289 3-97 (105)
350 3beg_B Splicing factor, argini 99.5 1.7E-14 5.9E-19 109.5 8.7 67 113-186 14-80 (115)
351 3u1l_A PRE-mRNA-splicing facto 99.5 4.5E-14 1.5E-18 119.8 11.5 79 205-290 131-230 (240)
352 3egn_A RNA-binding protein 40; 99.5 3.9E-15 1.3E-19 117.9 4.6 84 112-197 42-130 (143)
353 1wg1_A KIAA1579 protein, homol 99.5 1.1E-14 3.7E-19 105.0 6.3 75 113-196 3-77 (88)
354 3ue2_A Poly(U)-binding-splicin 99.5 3.7E-14 1.3E-18 107.3 9.3 81 207-288 19-108 (118)
355 3pgw_S U1-70K; protein-RNA com 99.5 3.5E-14 1.2E-18 132.6 10.1 83 112-196 99-181 (437)
356 1jmt_A Splicing factor U2AF 35 99.5 1.1E-14 3.7E-19 108.1 4.7 72 213-286 20-103 (104)
357 2hzc_A Splicing factor U2AF 65 99.5 4.5E-14 1.5E-18 101.6 7.1 71 113-192 4-85 (87)
358 1wf0_A TDP-43, TAR DNA-binding 99.5 3.4E-14 1.2E-18 102.4 6.4 78 113-199 3-80 (88)
359 2pe8_A Splicing factor 45; RRM 99.5 1.5E-13 5.1E-18 102.0 9.2 81 113-195 6-92 (105)
360 2bz2_A Negative elongation fac 99.5 1.9E-13 6.5E-18 104.5 9.5 77 111-197 35-111 (121)
361 2voo_A Lupus LA protein; RNA-b 99.4 2.5E-13 8.4E-18 112.8 8.5 78 114-195 108-185 (193)
362 2d9o_A DNAJ (HSP40) homolog, s 99.4 3.5E-12 1.2E-16 93.3 11.4 67 218-292 27-93 (100)
363 2dit_A HIV TAT specific factor 99.4 2.8E-12 9.5E-17 96.7 11.0 81 111-197 11-102 (112)
364 3u1l_A PRE-mRNA-splicing facto 99.4 7E-13 2.4E-17 112.5 8.4 80 112-197 131-229 (240)
365 3s6e_A RNA-binding protein 39; 99.4 1.8E-12 6.3E-17 97.2 9.3 79 206-289 5-93 (114)
366 3tht_A Alkylated DNA repair pr 99.3 3.6E-12 1.2E-16 114.0 8.6 76 205-287 15-97 (345)
367 3v4m_A Splicing factor U2AF 65 99.3 3.2E-12 1.1E-16 94.8 6.9 81 113-195 3-95 (105)
368 1jmt_A Splicing factor U2AF 35 99.3 7.2E-13 2.5E-17 98.2 3.1 72 120-194 20-103 (104)
369 2d9o_A DNAJ (HSP40) homolog, s 99.3 5.4E-11 1.9E-15 86.9 11.7 77 113-198 8-91 (100)
370 3ue2_A Poly(U)-binding-splicin 99.3 6.6E-12 2.3E-16 94.9 7.1 80 114-195 19-107 (118)
371 3tht_A Alkylated DNA repair pr 99.3 1.1E-11 3.7E-16 110.9 8.3 111 111-230 14-130 (345)
372 1owx_A Lupus LA protein, SS-B, 99.1 1.5E-10 5.3E-15 86.7 8.9 82 204-292 14-99 (121)
373 2dnr_A Synaptojanin-1; RRM dom 99.1 1.5E-10 5E-15 81.1 7.8 73 207-289 6-86 (91)
374 3s6e_A RNA-binding protein 39; 99.1 3.9E-10 1.3E-14 84.5 8.1 77 113-195 5-91 (114)
375 1owx_A Lupus LA protein, SS-B, 99.0 1.2E-09 4.1E-14 81.9 8.2 65 111-181 14-80 (121)
376 3dxb_A Thioredoxin N-terminall 99.0 1.6E-09 5.5E-14 92.1 8.8 68 220-288 141-212 (222)
377 1ufw_A Synaptojanin 2; RNP dom 99.0 1.2E-09 4.2E-14 76.8 6.1 73 206-288 13-94 (95)
378 2dnr_A Synaptojanin-1; RRM dom 98.7 3.1E-08 1.1E-12 69.3 5.6 72 113-195 5-84 (91)
379 2l9w_A U4/U6 snRNA-associated- 98.6 2E-07 6.9E-12 66.7 9.0 73 207-286 20-97 (117)
380 3dxb_A Thioredoxin N-terminall 98.6 1.3E-07 4.3E-12 80.3 7.7 79 115-195 124-211 (222)
381 1ufw_A Synaptojanin 2; RNP dom 98.5 1.8E-07 6.1E-12 65.8 5.1 71 113-194 13-92 (95)
382 2dhx_A Poly (ADP-ribose) polym 98.2 2.1E-05 7.1E-10 56.0 9.7 74 207-289 7-84 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.1 2E-05 6.8E-10 56.5 8.1 66 112-183 18-88 (117)
384 2dhx_A Poly (ADP-ribose) polym 97.9 0.00011 3.8E-09 52.3 9.5 89 113-221 6-99 (104)
385 1wey_A Calcipressin 1; structu 97.8 5.6E-05 1.9E-09 54.1 7.2 75 208-289 5-84 (104)
386 1uw4_A UPF3X; nonsense mediate 97.7 0.00031 1.1E-08 49.4 8.6 68 209-277 2-71 (91)
387 1whv_A Poly(A)-specific ribonu 97.6 0.00026 8.8E-09 49.7 7.9 55 207-271 15-69 (100)
388 1uw4_A UPF3X; nonsense mediate 97.5 0.00046 1.6E-08 48.5 7.4 68 116-183 2-71 (91)
389 1whv_A Poly(A)-specific ribonu 97.4 0.0012 4.1E-08 46.3 8.7 59 111-178 12-70 (100)
390 1wey_A Calcipressin 1; structu 97.3 0.00056 1.9E-08 48.9 6.1 77 113-197 3-84 (104)
391 1wwh_A Nucleoporin 35, nucleop 97.2 0.0015 5.2E-08 48.1 8.2 74 207-289 23-97 (119)
392 3ctr_A Poly(A)-specific ribonu 96.8 0.0016 5.5E-08 45.9 4.7 54 209-272 7-60 (101)
393 3pq1_A Poly(A) RNA polymerase; 96.8 0.0009 3.1E-08 61.9 4.2 49 327-376 53-102 (464)
394 2l08_A Regulator of nonsense t 96.7 0.0017 5.9E-08 45.9 4.5 70 207-277 8-79 (97)
395 3ctr_A Poly(A)-specific ribonu 96.5 0.0032 1.1E-07 44.4 4.7 54 116-178 7-60 (101)
396 2l08_A Regulator of nonsense t 96.3 0.003 1E-07 44.7 3.6 70 114-183 8-79 (97)
397 1wwh_A Nucleoporin 35, nucleop 96.3 0.012 4.1E-07 43.3 6.9 63 113-183 22-84 (119)
398 3p3d_A Nucleoporin 53; structu 96.0 0.0057 1.9E-07 45.7 3.8 77 209-288 8-98 (132)
399 3pq1_A Poly(A) RNA polymerase; 95.8 0.0044 1.5E-07 57.4 3.1 56 114-175 52-107 (464)
400 3d45_A Poly(A)-specific ribonu 88.3 1.7 5.8E-05 40.9 8.7 57 114-179 439-495 (507)
401 3p3d_A Nucleoporin 53; structu 87.4 0.6 2.1E-05 34.8 4.0 69 114-184 6-88 (132)
402 3d45_A Poly(A)-specific ribonu 86.2 1.7 6E-05 40.9 7.4 55 208-272 440-494 (507)
403 2g0c_A ATP-dependent RNA helic 77.4 6.5 0.00022 25.9 5.8 69 210-287 2-75 (76)
404 1xn9_A 30S ribosomal protein S 70.7 15 0.00051 25.9 6.4 49 218-267 28-80 (101)
405 1ywx_A 30S ribosomal protein S 65.9 16 0.00054 25.9 5.7 48 218-266 28-79 (102)
406 2v94_A RPS24, 30S ribosomal pr 64.5 17 0.00059 25.9 5.7 49 218-267 37-89 (107)
407 4eyt_A Telomerase associated p 59.8 38 0.0013 23.0 8.6 60 112-179 9-68 (129)
408 3u5c_Y RP50, 40S ribosomal pro 57.7 38 0.0013 25.2 6.7 49 218-267 33-85 (135)
409 4e8u_A Putative uncharacterize 54.7 25 0.00087 27.4 5.6 45 329-373 14-72 (172)
410 4eyt_A Telomerase associated p 53.2 50 0.0017 22.4 6.5 57 207-272 11-67 (129)
411 2g1d_A 30S ribosomal protein S 52.7 5.9 0.0002 27.9 1.6 49 218-267 29-81 (98)
412 2xzm_P RPS24E; ribosome, trans 49.2 33 0.0011 26.0 5.3 49 218-267 31-83 (149)
413 3lpe_A Putative transcription 47.1 66 0.0023 22.0 7.1 46 128-178 21-71 (92)
414 3j21_T 50S ribosomal protein L 39.9 54 0.0019 22.3 4.8 48 329-376 24-76 (86)
415 1vq8_S 50S ribosomal protein L 33.1 67 0.0023 21.7 4.4 46 330-375 24-74 (85)
416 3zzp_A TS9, ribosomal protein 28.5 51 0.0017 21.8 3.1 59 253-351 7-68 (77)
417 4a4j_A Pacszia, cation-transpo 28.4 1E+02 0.0035 18.7 4.9 44 328-371 4-47 (69)
418 3iz6_U 40S ribosomal protein S 25.8 23 0.0008 26.5 1.1 48 218-266 38-90 (138)
419 4e8u_A Putative uncharacterize 23.2 1.8E+02 0.0061 22.6 5.7 51 210-264 14-75 (172)
420 2lfv_A Protein DAMX; cell divi 28.4 18 0.00061 25.8 0.0 62 209-275 26-88 (106)
421 3fut_A Dimethyladenosine trans 22.5 73 0.0025 26.9 3.8 32 115-147 110-141 (271)
422 3dxs_X Copper-transporting ATP 22.5 1.1E+02 0.0039 18.9 4.1 45 328-372 4-48 (74)
423 2kjw_A TS9, 30S ribosomal prot 22.0 43 0.0015 23.3 1.8 71 253-360 7-85 (96)
424 1cpz_A Protein (COPZ); copper 21.9 1.3E+02 0.0046 17.7 5.9 44 329-372 3-46 (68)
425 3u5e_X 60S ribosomal protein L 21.4 1.2E+02 0.0041 22.7 4.3 48 329-376 80-132 (142)
426 2xmw_A PACS-N, cation-transpor 21.4 1.4E+02 0.0048 17.8 4.5 45 328-372 5-49 (71)
427 1osd_A MERP, hypothetical prot 20.8 1.5E+02 0.0051 17.8 5.3 44 329-372 6-49 (72)
428 2cu1_A Mitogen-activated prote 20.5 1.2E+02 0.0041 21.2 3.7 66 215-289 23-88 (103)
429 4a17_R RPL23A, 60S ribosomal p 20.1 1.4E+02 0.0048 22.6 4.4 47 330-376 89-140 (150)
430 2e5p_A Protein PHF1, PHD finge 20.0 74 0.0025 20.3 2.4 21 352-374 28-48 (68)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.4e-42 Score=310.13 Aligned_cols=214 Identities=17% Similarity=0.308 Sum_probs=192.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||+++++++|+++|+.|| |.++++ ++++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~i~v~ 90 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRL--RERELSVQ 90 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCee--CCeEEEEE
Confidence 3578999999999999999999999999 989887 45678999999999999999999999998 56778887
Q ss_pred ccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 017133 193 WATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (376)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~ 272 (376)
++. ..++|||+|||.++++++|+++|+ .||.|..+.++++..++.++|||||+|.+.++|.+|++.|+
T Consensus 91 ~~~-----------~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 91 LQP-----------TDALLCVANLPPSLTQQQFEELVR-PFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp ECC-----------CSCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ecC-----------CCCEEEEcCCCCcCCHHHHHHHHH-hcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 754 457999999999999999999996 99999999999998899999999999999999999999999
Q ss_pred CceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCC-CHHHHHhhhccC
Q 017133 273 GVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDV-SDEDLREPFSQF 351 (376)
Q Consensus 273 g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~-t~~~L~~~F~~~ 351 (376)
|..++|+.|.|.|+.++... ......++|||+|||.++ ++++|+++|+.|
T Consensus 159 ~~~~~g~~i~v~~a~~~~~~-----------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~ 209 (284)
T 3smz_A 159 GKPLGPRTLYVHWTDAGQLT-----------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAV 209 (284)
T ss_dssp TCEETTEECEEEECCGGGCC-----------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSS
T ss_pred CCEeCCcEEEEEECCCCCCC-----------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCC
Confidence 99999999999999765322 122456899999999996 999999999999
Q ss_pred CCeEEEEeeCC-----CeEEEEEeecCCCC
Q 017133 352 GEILSVKIPVG-----KGCGFVQFANRLVS 376 (376)
Q Consensus 352 G~i~~~~i~~~-----~g~afV~F~~~e~~ 376 (376)
|.|.++.|+++ +|+|||+|.+.++|
T Consensus 210 G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 239 (284)
T 3smz_A 210 HSPTFCQLACGQDGQLKGFAVLEYETAEMA 239 (284)
T ss_dssp SCCSEEEEEECSSCCEEEEEEEECSSHHHH
T ss_pred CCeEEEEEEECCCCCcccEEEEEeCCHHHH
Confidence 99999999874 79999999998865
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=2e-41 Score=303.86 Aligned_cols=222 Identities=16% Similarity=0.334 Sum_probs=185.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+|+++++... ++|||||+|.+.++|.+|++ +++..+ .++.++
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~A~~A~~-~~~~~~--~g~~i~ 111 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NFRFARIEFARYDGALAAIT-KTHKVV--GQNEII 111 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SSEEEEEEESSHHHHHHHHT-TTTCEE--TTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--CcEEEEEEECCHHHHHHHHH-hCCcEe--CCcEEE
Confidence 4567899999999999999999999999999999999998732 57999999999999999994 899888 567777
Q ss_pred ccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 017133 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (376)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 269 (376)
+.++ ..++|||+|||.++++++|+++|+ .|| .|..|.+..+.. +.++|||||+|.+.++|.+|++
T Consensus 112 v~~~------------~~~~l~v~nlp~~~t~~~l~~~f~-~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 112 VSHL------------TECTLWMTNFPPSYTQRNIRDLLQ-DINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp EEEC------------CSCEEEEECCCTTCCHHHHHHHHH-HTTCCCCEEECC--------CCEEEEECSSHHHHHHHHH
T ss_pred EEEC------------CCCEEEEECCCCCCCHHHHHHHHH-HhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHH
Confidence 7765 367999999999999999999996 999 999999998865 7899999999999999999999
Q ss_pred HhCCceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCC-CCHHHHHhhh
Q 017133 270 EMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSD-VSDEDLREPF 348 (376)
Q Consensus 270 ~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~F 348 (376)
.|+|..+.|+.|.|.|+.+....... .......++|||+|||.+ +++++|+++|
T Consensus 178 ~l~g~~~~g~~l~v~~a~~~~~~~~~-------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F 232 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNPLEKSKRT-------------------------DSATLEGREIMIRNLSTELLDENLLRESF 232 (292)
T ss_dssp HHTTCEETTEECEEEECCCC----------------------------------CCTTTEEEEEEECTTTCCHHHHHHHH
T ss_pred HhCCCEeCCcEEEEEECCCCcccccc-------------------------cccCCCCceEEEECCCcccCCHHHHHHHH
Confidence 99999999999999999876443210 123456789999999999 9999999999
Q ss_pred ccCCCeEEEEeeCC-------CeEEEEEeecCCCC
Q 017133 349 SQFGEILSVKIPVG-------KGCGFVQFANRLVS 376 (376)
Q Consensus 349 ~~~G~i~~~~i~~~-------~g~afV~F~~~e~~ 376 (376)
+.||.|.+|+++++ +|+|||+|.+.++|
T Consensus 233 ~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A 267 (292)
T 2ghp_A 233 EGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSA 267 (292)
T ss_dssp GGGSCEEEEECCSCCC---CCCEEEEEEESSHHHH
T ss_pred hccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHH
Confidence 99999999999753 68999999998865
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=7e-36 Score=254.84 Aligned_cols=172 Identities=28% Similarity=0.515 Sum_probs=151.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
..+.++|||+|||+++++++|+++|+.||.|.+|+|++|+.+++++|||||+|.+.++|.+|++.+++..+ .++.+++
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~--~g~~i~~ 89 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI--KGKPVRI 89 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc--CCccccc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999988 5677777
Q ss_pred cccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 017133 192 NWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (376)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l 271 (376)
.++..... ......++|||+|||.++++++|+++|+ .||.|..|+|+++. +.++|||||+|.+.++|.+||+.|
T Consensus 90 ~~~~~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 90 MWSQRDPS---LRKSGVGNIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp EECCCCTH---HHHHCTTEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccccc---ccccccccceECCcccccHHHHHHHHHh-hcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHh
Confidence 77653321 1222356899999999999999999995 99999999999985 457999999999999999999999
Q ss_pred CCceecCcceEEeecCCCCc
Q 017133 272 NGVYCSSRPMRIDVATPKKA 291 (376)
Q Consensus 272 ~g~~~~g~~i~v~~~~~~~~ 291 (376)
||..|+|+.|+|.|+.++..
T Consensus 164 ng~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 164 NGMLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp TTCEETTEECEEEECCCHHH
T ss_pred CCCEECCEEEEEEEcCCCcc
Confidence 99999999999999987643
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=236.30 Aligned_cols=166 Identities=31% Similarity=0.605 Sum_probs=151.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccccc
Q 017133 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (376)
Q Consensus 116 ~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~ 195 (376)
++|||+|||+++++++|+++|+.||.|.+++++.++ +++++|||||+|.+.++|.+|++.+++..+ .++.+++.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQI--ENNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCcc--CCCeeEEEEcC
Confidence 589999999999999999999999999999999997 588999999999999999999999999998 56788888776
Q ss_pred cCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 017133 196 FSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (376)
Q Consensus 196 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~ 275 (376)
.... ......++|||+|||.++++++|+++|+ .||.|..+.+.++..++.++|+|||+|.+.++|.+|++.|||..
T Consensus 78 ~~~~---~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 78 QSQQ---SSSDDTFNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CCCC---CCCTTCEEEEEESCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCC---CCCCCCceEEECCCCCCCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 4332 3344678999999999999999999995 99999999999998899999999999999999999999999999
Q ss_pred ecCcceEEeecCC
Q 017133 276 CSSRPMRIDVATP 288 (376)
Q Consensus 276 ~~g~~i~v~~~~~ 288 (376)
++|+.|+|.|++.
T Consensus 154 ~~g~~i~v~~a~~ 166 (166)
T 3md3_A 154 LNGRPLRINWAAK 166 (166)
T ss_dssp ETTEECEEEESCC
T ss_pred cCCcEEEEEecCC
Confidence 9999999999863
No 5
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3.3e-34 Score=241.67 Aligned_cols=177 Identities=18% Similarity=0.367 Sum_probs=150.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++. ++..+ .++.++
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~--~g~~l~ 85 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV--DGRVVE 85 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE--CCEEee
Confidence 456789999999999999999999999999999999999998999999999999999999999975 77777 567777
Q ss_pred ccccccCCCCC-ccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Q 017133 191 LNWATFSGSDR-RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMT 269 (376)
Q Consensus 191 ~~~~~~~~~~~-~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~ 269 (376)
+.++....... .......++|||+|||.++++++|+++|+ .||.|..|.+..+..++.++|||||+|.+.++|.+|+.
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFE-QYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 77765443222 22334568999999999999999999995 99999999999998889999999999999999999997
Q ss_pred HhCCceecCcceEEeecCCCCcC
Q 017133 270 EMNGVYCSSRPMRIDVATPKKAS 292 (376)
Q Consensus 270 ~l~g~~~~g~~i~v~~~~~~~~~ 292 (376)
. ++..|+|+.|+|.|+.++...
T Consensus 165 ~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 165 Q-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp C-SCCEETTEECEEEECC-----
T ss_pred h-CCcEECCEEEEEEecCChhHh
Confidence 6 899999999999999987654
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=4.9e-34 Score=234.48 Aligned_cols=165 Identities=26% Similarity=0.503 Sum_probs=152.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
..++|||+|||+++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|++.|++..+ .++.+++.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~ 79 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV--RNKRLKVSY 79 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe--CCcEEEEEe
Confidence 468999999999999999999999999999999999998999999999999999999999999999988 567888888
Q ss_pred cccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 017133 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (376)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g 273 (376)
+.... .....++|||+|||.++++++|+++|+ .||.|..+.+.++..++.++|+|||+|.+.++|.+|++.|||
T Consensus 80 ~~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 80 ARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIFG-KYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp CCCCS-----STTTTCEEEEESCCTTCCHHHHHHHHT-SSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCc-----ccCCCCCEEEeCCCCCCCHHHHHHhhh-cCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 76433 234567999999999999999999995 999999999999988899999999999999999999999999
Q ss_pred ceecC--cceEEeec
Q 017133 274 VYCSS--RPMRIDVA 286 (376)
Q Consensus 274 ~~~~g--~~i~v~~~ 286 (376)
..+.| ++|+|.|+
T Consensus 154 ~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 154 VIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCCTTCSSCCEEEEC
T ss_pred CEecCCCeEEEEEeC
Confidence 99977 99999986
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=4.6e-34 Score=244.55 Aligned_cols=176 Identities=20% Similarity=0.393 Sum_probs=154.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||+++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~--~g~~l~v~ 103 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML--GGRNIKVG 103 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC--C-CCCEEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee--CCeeEEEe
Confidence 4578999999999999999999999999999999999998999999999999999999999999999988 56677776
Q ss_pred ccccCCCCCc------cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHH
Q 017133 193 WATFSGSDRR------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSR 266 (376)
Q Consensus 193 ~~~~~~~~~~------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~ 266 (376)
++........ ......++|||+|||.++++++|+++|+ .||.|..+++.++..+++++|+|||+|.+.++|.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFE-AFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHT-TSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHh-ccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 6543321110 1234567999999999999999999995 99999999999998899999999999999999999
Q ss_pred HHHHhCCceecCcceEEeecCCCCc
Q 017133 267 AMTEMNGVYCSSRPMRIDVATPKKA 291 (376)
Q Consensus 267 Al~~l~g~~~~g~~i~v~~~~~~~~ 291 (376)
|++.|||..|+|+.|+|.|+.++..
T Consensus 183 A~~~l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 183 AVSSMNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HHHHHTTCBCSSSBCEEEECSSCSS
T ss_pred HHHHccCCEeCCcEEEEEEecCCCC
Confidence 9999999999999999999988643
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1e-33 Score=232.33 Aligned_cols=164 Identities=27% Similarity=0.501 Sum_probs=150.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccccc
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 194 (376)
.++|||+|||+++++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|++.|++..+ .++.+++.++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~ 79 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL--QTKTIKVSYA 79 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc--CCceEEEEec
Confidence 68999999999999999999999999999999999998999999999999999999999999999988 5678888877
Q ss_pred ccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Q 017133 195 TFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV 274 (376)
Q Consensus 195 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~ 274 (376)
.... .....++|||+|||.++++++|+++|+ .||.|..+.+..+..++.++|+|||+|.+.++|.+|++.|||.
T Consensus 80 ~~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 153 (167)
T 1fxl_A 80 RPSS-----ASIRDANLYVSGLPKTMTQKELEQLFS-QYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 153 (167)
T ss_dssp CCCC-----GGGTTCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCc-----ccCCCCcEEECCCCCcCCHHHHHHHHH-hcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCC
Confidence 6432 223457899999999999999999995 9999999999999888999999999999999999999999999
Q ss_pred eecCcc--eEEeec
Q 017133 275 YCSSRP--MRIDVA 286 (376)
Q Consensus 275 ~~~g~~--i~v~~~ 286 (376)
.+.|+. |+|.||
T Consensus 154 ~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 154 KPSGATEPITVKFA 167 (167)
T ss_dssp CCTTCSSCCEEEEC
T ss_pred ccCCCccceEEEeC
Confidence 999965 888875
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.9e-33 Score=230.62 Aligned_cols=168 Identities=23% Similarity=0.436 Sum_probs=149.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCC--CccceEEEEecCHHHHHHHHHHhcCCcC-CCCCCccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEGYGFVEFYSRAAAEKVLQSYSGSLM-PNTDQPFR 190 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g--~~~g~afV~f~~~~~a~~a~~~l~~~~~-~~~~~~~~ 190 (376)
+.++|||+|||+++++++|+++|+.||.|.+|++++++.++ +++|||||+|.+.++|.+|++.|++..+ .+..+.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998776 8999999999999999999999999765 45577777
Q ss_pred ccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 017133 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (376)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ 270 (376)
+.++..... .....++|||+|||.++++++|+++|+ .||.|.++.+.++. ++.++|+|||+|.+.++|.+|++.
T Consensus 82 ~~~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 82 MKPADSEKN----NAVEDRKLFIGMISKKCTENDIRVMFS-SFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEECGGGCC----SCGGGSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred Ecccccccc----ccCCCCeEEEcCCCCcCCHHHHHHHHH-hCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 777654332 233567999999999999999999995 99999999999995 589999999999999999999999
Q ss_pred hCCceec---CcceEEeecC
Q 017133 271 MNGVYCS---SRPMRIDVAT 287 (376)
Q Consensus 271 l~g~~~~---g~~i~v~~~~ 287 (376)
|||..+. +++|+|.|++
T Consensus 156 l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HTTSCCCTTCSSCCEEEECC
T ss_pred hcCCcccCCCCCCeEEEecC
Confidence 9998876 4999999984
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=6.2e-34 Score=233.66 Aligned_cols=165 Identities=26% Similarity=0.507 Sum_probs=146.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
++++|||+|||+++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++. +..+ .++.+++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~i~v~~ 77 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL--DGKVIDPKR 77 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE--TTEECCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc--CCeEccccc
Confidence 578999999999999999999999999999999999998999999999999999999999985 3444 455666665
Q ss_pred cccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Q 017133 194 ATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG 273 (376)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g 273 (376)
+... ......++|||+|||.++++++|+++|+ .||.|..+.+..+..++.++|+|||+|.+.++|.+|++ +++
T Consensus 78 ~~~~-----~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~ 150 (167)
T 2cjk_A 78 AIPR-----DEQDKTGKIFVGGIGPDVRPKEFEEFFS-QWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKF 150 (167)
T ss_dssp CCCH-----HHHHHCEEEEEEEECTTCCHHHHHHHHH-TTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSE
T ss_pred ccch-----hhccCCCeEEECCCCCCCCHHHHHHHHH-hCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCC
Confidence 5321 1223456999999999999999999996 99999999999998889999999999999999999997 899
Q ss_pred ceecCcceEEeecCCC
Q 017133 274 VYCSSRPMRIDVATPK 289 (376)
Q Consensus 274 ~~~~g~~i~v~~~~~~ 289 (376)
..++|+.|+|.|+.++
T Consensus 151 ~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 151 IDFKDRKIEIKRAEPR 166 (167)
T ss_dssp ECSSSSCEEEEECCCC
T ss_pred EEeCCeEEEEeecCCC
Confidence 9999999999999876
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.98 E-value=2.1e-31 Score=219.59 Aligned_cols=160 Identities=20% Similarity=0.438 Sum_probs=141.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhc----C-------CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHT----G-------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~----G-------~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~ 181 (376)
.+.++|||+|||+++++++|+++|+.| | .|.++++.+ ++|||||+|.+.++|.+|+ .+++..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 357899999999999999999999999 6 666666543 4689999999999999999 899998
Q ss_pred CCCCCCcccccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCH
Q 017133 182 MPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDE 261 (376)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~ 261 (376)
+ .++.+++.++.... .....++|||+|||.++++++|+++|+ .||.|..+.+.+++.++.++|+|||+|.+.
T Consensus 75 ~--~g~~i~v~~~~~~~-----~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~ 146 (172)
T 2g4b_A 75 F--QGQSLKIRRPHDYQ-----PLPGAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSATGLSKGYAFCEYVDI 146 (172)
T ss_dssp E--TTEECEEECCSSCC-----CCTTTTCEEEECCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCSEEEEEEEEESST
T ss_pred e--cCceeeecCCcccC-----CCCCCCEEEEEcCCCcCCHHHHHHHHH-hcCCceEEEEEecCCCCCcceEEEEEeCCH
Confidence 8 56777777754322 223467999999999999999999996 999999999999988899999999999999
Q ss_pred HHHHHHHHHhCCceecCcceEEeecC
Q 017133 262 NERSRAMTEMNGVYCSSRPMRIDVAT 287 (376)
Q Consensus 262 ~~A~~Al~~l~g~~~~g~~i~v~~~~ 287 (376)
++|.+|++.|||..++|+.|+|.|+.
T Consensus 147 ~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 147 NVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp THHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999999999974
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=2.4e-32 Score=225.95 Aligned_cols=166 Identities=19% Similarity=0.308 Sum_probs=144.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|..||.+.. .++.+..+|.++|||||+|.+.++|.+|+ .|++..+ .++.++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~ 84 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV--FGNEIK 84 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE--TTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe--CCeEEE
Confidence 5567899999999999999999999999998766 34455557899999999999999999999 5999988 578888
Q ss_pred ccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 017133 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (376)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ 270 (376)
+.++..... ......++|||+|||.++++++|+++|+ .||.|..+ ..++.++|+|||+|.+.++|.+|++.
T Consensus 85 v~~~~~~~~---~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 85 LEKPKGRDS---KKVRAARTLLAKNLSFNITEDELKEVFE-DALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp EECCCCSSC---STTGGGGEEEEESCCSSCCHHHHHHHCT-TCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred EecCCCccc---cccccCCEEEEeCCCCCCCHHHHHHHHH-hcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 888765432 2334568999999999999999999996 99987766 45689999999999999999999999
Q ss_pred hCCceecCcceEEeecCCC
Q 017133 271 MNGVYCSSRPMRIDVATPK 289 (376)
Q Consensus 271 l~g~~~~g~~i~v~~~~~~ 289 (376)
|||..|+|+.|+|.|+.++
T Consensus 156 l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HTEEEETTEEEEEEECSSC
T ss_pred hCCCEECCeEEEEEecCCC
Confidence 9999999999999999875
No 13
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=5.2e-31 Score=235.09 Aligned_cols=173 Identities=16% Similarity=0.303 Sum_probs=157.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
..++|||+|||+++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|++..+ .++.+++.+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~i~v~~ 171 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL--GPRTLYVHW 171 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEEE
Confidence 467999999999999999999999999999999999998999999999999999999999999999988 567888888
Q ss_pred cccCCCCCccCCCCCceEEECCCCCCC-cHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 017133 194 ATFSGSDRRTEACSDLSIFVGDLAPDV-TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (376)
Q Consensus 194 ~~~~~~~~~~~~~~~~~l~v~nlp~~~-t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~ 272 (376)
+...... ......++|||+|||.++ ++++|+++|+ .||.|..+.+..+. +|.++|+|||+|.+.++|.+|+..||
T Consensus 172 a~~~~~~--~~~~~~~~l~v~nlp~~~~~~~~l~~~f~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 172 TDAGQLT--PALLHSRCLCVDRLPPGFNDVDALCRALS-AVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp CCGGGCC--TTTTSCSEEEEECCCTTCCCHHHHHHHTC-SSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCC--cccCCccEEEEecCCcccCCHHHHHHHhh-CCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 7754332 233467899999999996 9999999995 99999999999986 69999999999999999999999999
Q ss_pred CceecCcceEEeecCCCCcC
Q 017133 273 GVYCSSRPMRIDVATPKKAS 292 (376)
Q Consensus 273 g~~~~g~~i~v~~~~~~~~~ 292 (376)
|..++|+.|+|.|+.++..+
T Consensus 248 g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 248 GLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp TCEETTEECEEEECCSSSCH
T ss_pred CCccCCeEEEEEEecCCCcc
Confidence 99999999999999887654
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=3e-31 Score=223.74 Aligned_cols=163 Identities=14% Similarity=0.184 Sum_probs=138.2
Q ss_pred CCceEEEcCCC-CCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 114 ETKTIWIGDLF-HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 114 ~~~~v~v~nLp-~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
++++|||+||| +.+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|..|++.|+|..+ .++.|++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~--~g~~l~v~ 75 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFM--FGQKMNVC 75 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEE--CCceEEEE
Confidence 57899999999 899999999999999999999998753 69999999999999999999999999 55778887
Q ss_pred ccccCCCCCc--------------------------------cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCe--eE
Q 017133 193 WATFSGSDRR--------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSV--KG 238 (376)
Q Consensus 193 ~~~~~~~~~~--------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i--~~ 238 (376)
++......+. ....++++|||+|||+++|+++|+++|+ .||.| .+
T Consensus 76 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~-~~G~v~~~~ 154 (205)
T 3tyt_A 76 VSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICD-ELGVKRPTS 154 (205)
T ss_dssp ECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHH-HHTCCCCSE
T ss_pred EccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHH-hcCCcceEE
Confidence 7653211000 0123457899999999999999999996 99999 88
Q ss_pred EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc----ceEEeec
Q 017133 239 AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR----PMRIDVA 286 (376)
Q Consensus 239 v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~----~i~v~~~ 286 (376)
++++.+. +.++|+|||+|.+.++|.+||..|||..|.|+ ++.|+++
T Consensus 155 v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 155 VKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9888774 45679999999999999999999999999876 5777764
No 15
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=5.4e-31 Score=222.28 Aligned_cols=169 Identities=20% Similarity=0.387 Sum_probs=144.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcC-----------CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTG-----------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G-----------~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~ 181 (376)
...++|||+|||+++++++|+++|+.|| .|.++.+ ++++|||||+|.+.++|.+|+ .|++..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 3578999999999999999999999994 4555544 456799999999999999999 899998
Q ss_pred CCCCCCcccccccccCCCC---------------CccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCC
Q 017133 182 MPNTDQPFRLNWATFSGSD---------------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN 246 (376)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~ 246 (376)
+ .++.+++.++...... ........++|||+|||.++++++|+++|+ .||.|..+.+.++..
T Consensus 75 ~--~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~~~~~~ 151 (198)
T 2yh0_A 75 F--QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVKDSA 151 (198)
T ss_dssp E--TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHH-TBSCEEEEEEEECTT
T ss_pred E--cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCccEEEEeecCC
Confidence 8 5677888776543111 111224668999999999999999999995 999999999999988
Q ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCc
Q 017133 247 TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (376)
Q Consensus 247 ~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~ 291 (376)
++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|+.++..
T Consensus 152 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 152 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp TCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 899999999999999999999999999999999999999988644
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=1.6e-30 Score=231.61 Aligned_cols=166 Identities=23% Similarity=0.410 Sum_probs=144.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCC
Q 017133 111 TNDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~----~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~ 186 (376)
.....++|||+|||+++++++|+ ++|+.||.|.+|++++ +++++|||||+|.+.++|.+|++.|++..+ .+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g 79 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YD 79 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee--CC
Confidence 44678999999999999999977 8999999999999876 678999999999999999999999999988 55
Q ss_pred CcccccccccCCCC------------------------------------------------------------------
Q 017133 187 QPFRLNWATFSGSD------------------------------------------------------------------ 200 (376)
Q Consensus 187 ~~~~~~~~~~~~~~------------------------------------------------------------------ 200 (376)
+.+++.|+......
T Consensus 80 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPG 159 (282)
T ss_pred cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCC
Confidence 77888776543210
Q ss_pred ----------------------------------------CccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEE
Q 017133 201 ----------------------------------------RRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAK 240 (376)
Q Consensus 201 ----------------------------------------~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~ 240 (376)
......++++|||+|||.++++++|+++|+ .||.|.+|+
T Consensus 160 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~-~~G~i~~v~ 238 (282)
T 3pgw_A 160 QPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFN-QFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHH-hcCCeEEEE
Confidence 001223467899999999999999999996 999999999
Q ss_pred EEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CcceEEeecC
Q 017133 241 VIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVAT 287 (376)
Q Consensus 241 i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~i~v~~~~ 287 (376)
+..++ +|+|||+|.+.++|.+|++.|||..|. |+.|+|.|++
T Consensus 239 ~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 239 LVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 98653 589999999999999999999999999 9999999986
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=8.3e-31 Score=234.73 Aligned_cols=171 Identities=13% Similarity=0.297 Sum_probs=145.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
..++|||+|||+++++++|+++|+.|| .|.+|+++.++. |.++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI--EGYTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEEE
Confidence 578999999999999999999999999 999999999874 88999999999999999999999999999 55888888
Q ss_pred ccccCCCCCc--cCCCCCceEEECCCCCC-CcHHHHHHHHhhhCCCeeEEEEEecCC-CCCcceEEEEEeCCHHHHHHHH
Q 017133 193 WATFSGSDRR--TEACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSN-TGRTKGYGFVRFGDENERSRAM 268 (376)
Q Consensus 193 ~~~~~~~~~~--~~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~~g~i~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~Al 268 (376)
++........ ......++|||+|||.+ +++++|+++|+ .||.|..|.+.++.. ++.++|+|||+|.+.++|.+|+
T Consensus 193 ~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~ 271 (292)
T 2ghp_A 193 VSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFE-GFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL 271 (292)
T ss_dssp ECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHG-GGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG
T ss_pred ECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHh-ccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH
Confidence 8775544332 24456789999999999 99999999996 999999999998865 5899999999999999999999
Q ss_pred HHhCCceecCcceEEeecCCC
Q 017133 269 TEMNGVYCSSRPMRIDVATPK 289 (376)
Q Consensus 269 ~~l~g~~~~g~~i~v~~~~~~ 289 (376)
.|||..|+|+.|+|.|+.++
T Consensus 272 -~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 272 -QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp -GGTTEEETTEEEEEEECCCC
T ss_pred -HhcCCEECCcEEEEEEecCC
Confidence 99999999999999999876
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=4.3e-30 Score=221.50 Aligned_cols=165 Identities=16% Similarity=0.290 Sum_probs=142.9
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 112 NDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 112 ~~~~~~v~v~nLp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
..++++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~ 103 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIR 103 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBC--SSSBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 35689999999999 99999999999999999999999876 58999999999999999999999998 557788
Q ss_pred ccccccCCCCCc------------------------------cCCCCCceEEECCCCCCCcHHHHHHHHhhhCC-CeeEE
Q 017133 191 LNWATFSGSDRR------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGA 239 (376)
Q Consensus 191 ~~~~~~~~~~~~------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g-~i~~v 239 (376)
+.++........ ....++++|||+|||.++++++|+++|+ .|| .|..+
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~~i~~v 182 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGF 182 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHH-TTSCCEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHH-HcCCCeeEE
Confidence 877754311000 1123468999999999999999999995 999 99999
Q ss_pred EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CcceEEeecCCC
Q 017133 240 KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATPK 289 (376)
Q Consensus 240 ~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~i~v~~~~~~ 289 (376)
+++.+ .+|+|||+|.+.++|.+|++.|+|..++ |+.|+|.|++++
T Consensus 183 ~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 183 KFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 98653 3689999999999999999999999999 999999999864
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=4.2e-30 Score=216.77 Aligned_cols=162 Identities=17% Similarity=0.297 Sum_probs=140.9
Q ss_pred CceEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 115 TKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 115 ~~~v~v~nLp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
+++|||+|||+ ++++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++.|++..+ .++.+++.+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~~ 75 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKL--HGKPIRITL 75 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCC--SSCCCEEEE
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCee--cCeEEEEEE
Confidence 68999999999 99999999999999999999998875 58999999999999999999999998 557788877
Q ss_pred cccCCCCCc------------------------------cCCCCCceEEECCCCCCCcHHHHHHHHhhhCC-CeeEEEEE
Q 017133 194 ATFSGSDRR------------------------------TEACSDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVI 242 (376)
Q Consensus 194 ~~~~~~~~~------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g-~i~~v~i~ 242 (376)
+........ ....++++|||+|||..+++++|+++|+ .|| .|..++++
T Consensus 76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~~v~~v~i~ 154 (198)
T 1qm9_A 76 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFS-SNGGVVKGFKFF 154 (198)
T ss_dssp CCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHH-HTTSCCCEEEES
T ss_pred ecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHH-HcCCCceEEEEE
Confidence 654311100 1123478999999999999999999996 999 99999987
Q ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec-CcceEEeecCCC
Q 017133 243 IDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS-SRPMRIDVATPK 289 (376)
Q Consensus 243 ~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~-g~~i~v~~~~~~ 289 (376)
.+ .+|+|||+|.+.++|.+|++.|||..++ |+.|+|.|++++
T Consensus 155 ~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 155 QK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp ST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred eC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 54 2689999999999999999999999999 999999999864
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.6e-29 Score=222.21 Aligned_cols=159 Identities=26% Similarity=0.511 Sum_probs=143.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++|+++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|+..+++..+ .++.++
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i--~g~~l~ 89 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTIL--KSRPLR 89 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEE--CCceeE
Confidence 3456789999999999999999999999999999998654 58999999999999999999999998 568888
Q ss_pred ccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Q 017133 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTE 270 (376)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~ 270 (376)
+.++. +.++|||+|||..+|+++|+++|+ .||.|..|.++.+ .+|+++|+|||+|.+.++|.+|+..
T Consensus 90 v~~a~-----------~~~~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~ 156 (261)
T 3sde_A 90 IRFAT-----------HGAALTVKNLSPVVSNELLEQAFS-QFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALER 156 (261)
T ss_dssp EEECC-----------CSSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred eeecc-----------cCCcccccCCCCCCCHHHHHHHHH-hcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHH
Confidence 88875 457999999999999999999996 9999999999999 5799999999999999999999999
Q ss_pred hCC-ceec---CcceEEeecCCCC
Q 017133 271 MNG-VYCS---SRPMRIDVATPKK 290 (376)
Q Consensus 271 l~g-~~~~---g~~i~v~~~~~~~ 290 (376)
|++ ..+. +++|.|.++....
T Consensus 157 l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 157 CGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHSCEESSSSCCBCEEEECCCEE
T ss_pred hcCCeEEecCCCceEEEeeccccC
Confidence 954 4444 9999999998764
No 21
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=6.1e-30 Score=218.04 Aligned_cols=140 Identities=34% Similarity=0.553 Sum_probs=125.3
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
.+.++|||+|||+++|+++|+++|+ .||.|.+|+|++|+.+++++|||||+|.+.++|.+||+.|++..+.|+.|++.+
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFS-PAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 4567999999999999999999995 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeC----
Q 017133 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV---- 361 (376)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~---- 361 (376)
+....... .....+|||+|||+++|+++|+++|+.||.|++++|++
T Consensus 92 ~~~~~~~~------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~ 141 (213)
T 4f02_A 92 SQRDPSLR------------------------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 141 (213)
T ss_dssp CCCCTHHH------------------------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE
T ss_pred cccccccc------------------------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC
Confidence 87653321 01235899999999999999999999999999999975
Q ss_pred CCeEEEEEeecCCCC
Q 017133 362 GKGCGFVQFANRLVS 376 (376)
Q Consensus 362 ~~g~afV~F~~~e~~ 376 (376)
++|||||+|.+.++|
T Consensus 142 ~~g~~fV~f~~~~~a 156 (213)
T 4f02_A 142 SKGYGFVHFETQEAA 156 (213)
T ss_dssp EEEEEEEEESSHHHH
T ss_pred CceEEEEEeCCHHHH
Confidence 479999999998865
No 22
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=2.3e-29 Score=211.89 Aligned_cols=145 Identities=27% Similarity=0.470 Sum_probs=124.2
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
.....++|||+|||.++|+++|+++|+ .||.|.+|.+++++.++.++|||||+|.+.++|.+||+. ++..+.|+.|.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFE-QWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 344678999999999999999999995 999999999999998999999999999999999999965 999999999999
Q ss_pred eecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCC-
Q 017133 284 DVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG- 362 (376)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~- 362 (376)
.++....... ........++|||+|||.++|+++|+++|+.||.|.++.++++
T Consensus 87 ~~~~~~~~~~--------------------------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 87 KRAVSREDSQ--------------------------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp EECCC-------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred ecccCccccc--------------------------ccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 9997654321 1112335589999999999999999999999999999999853
Q ss_pred -----CeEEEEEeecCCCC
Q 017133 363 -----KGCGFVQFANRLVS 376 (376)
Q Consensus 363 -----~g~afV~F~~~e~~ 376 (376)
+|||||+|.+.++|
T Consensus 141 ~~g~~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDDHDSV 159 (196)
T ss_dssp TTCCEEEEEEEEESSHHHH
T ss_pred CCCCccceEEEEECCHHHH
Confidence 68999999998765
No 23
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.96 E-value=2.9e-29 Score=205.95 Aligned_cols=137 Identities=26% Similarity=0.511 Sum_probs=125.6
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
++++|||+|||.++++++|+++|+ .||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFR-AIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 467999999999999999999995 9999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCC----
Q 017133 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---- 362 (376)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~---- 362 (376)
.+.... ...++|+|+|||.++++++|+++|+.||.|.++.+.++
T Consensus 81 ~~~~~~--------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~ 128 (168)
T 1b7f_A 81 RPGGES--------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTG 128 (168)
T ss_dssp CCCSST--------------------------------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTC
T ss_pred CCCccc--------------------------------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCC
Confidence 865321 24579999999999999999999999999999999864
Q ss_pred --CeEEEEEeecCCCC
Q 017133 363 --KGCGFVQFANRLVS 376 (376)
Q Consensus 363 --~g~afV~F~~~e~~ 376 (376)
+|+|||+|.+.++|
T Consensus 129 ~~~g~afV~f~~~~~A 144 (168)
T 1b7f_A 129 RPRGVAFVRYNKREEA 144 (168)
T ss_dssp CEEEEEEEEESSHHHH
T ss_pred CcceEEEEEECCHHHH
Confidence 48999999998865
No 24
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=4.9e-29 Score=204.29 Aligned_cols=136 Identities=27% Similarity=0.594 Sum_probs=124.7
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecC
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 287 (376)
+++|||+|||.++++++|+++|+ .||.|.++.+.+++.++.++|+|||+|.+.++|.+|++.|+|..+.|+.|+|.++.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFG-SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 57999999999999999999995 99999999999998889999999999999999999999999999999999999998
Q ss_pred CCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCC-----
Q 017133 288 PKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG----- 362 (376)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~----- 362 (376)
+.... ...++|+|+|||..+++++|+++|+.||.|.++++.++
T Consensus 81 ~~~~~--------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~ 128 (167)
T 1fxl_A 81 PSSAS--------------------------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGV 128 (167)
T ss_dssp CCCGG--------------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCC
T ss_pred CCccc--------------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCC
Confidence 65322 23468999999999999999999999999999999753
Q ss_pred -CeEEEEEeecCCCC
Q 017133 363 -KGCGFVQFANRLVS 376 (376)
Q Consensus 363 -~g~afV~F~~~e~~ 376 (376)
+|+|||+|.+.++|
T Consensus 129 ~~g~afV~f~~~~~A 143 (167)
T 1fxl_A 129 SRGVGFIRFDKRIEA 143 (167)
T ss_dssp EEEEEEEEESSHHHH
T ss_pred ccceEEEEeCCHHHH
Confidence 69999999998865
No 25
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-28 Score=201.25 Aligned_cols=136 Identities=28% Similarity=0.515 Sum_probs=122.4
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 288 (376)
++|||+|||.++++++|+++|+ .||.|.+|.+.+++. +.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQ-VGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHG-GGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHH-hcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 5899999999999999999995 999999999999865 78999999999999999999999999999999999999976
Q ss_pred CCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCC------
Q 017133 289 KKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG------ 362 (376)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~------ 362 (376)
.... ...+.++|||+|||..+++++|+++|+.||.|.++.+.++
T Consensus 79 ~~~~------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~ 128 (166)
T 3md3_A 79 SQQS------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSS 128 (166)
T ss_dssp CCCC------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCE
T ss_pred CCCC------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCc
Confidence 5322 2345679999999999999999999999999999999753
Q ss_pred CeEEEEEeecCCCC
Q 017133 363 KGCGFVQFANRLVS 376 (376)
Q Consensus 363 ~g~afV~F~~~e~~ 376 (376)
+|+|||+|.+.++|
T Consensus 129 ~g~afV~f~~~~~A 142 (166)
T 3md3_A 129 RGYGFVSFTSQDDA 142 (166)
T ss_dssp EEEEEEEESCHHHH
T ss_pred ceEEEEEeCCHHHH
Confidence 68999999998865
No 26
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=2.3e-28 Score=201.84 Aligned_cols=138 Identities=26% Similarity=0.537 Sum_probs=122.4
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCC--CcceEEEEEeCCHHHHHHHHHHhCCceec---Ccce
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTG--RTKGYGFVRFGDENERSRAMTEMNGVYCS---SRPM 281 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~--~~~g~afV~f~~~~~A~~Al~~l~g~~~~---g~~i 281 (376)
..++|||+|||.++++++|+++|+ .||.|.+|+++++..++ +++|||||+|.+.++|.+|++.|++..+. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFE-QYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 457999999999999999999995 99999999999998876 89999999999999999999999998875 6788
Q ss_pred EEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeC
Q 017133 282 RIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV 361 (376)
Q Consensus 282 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~ 361 (376)
.+.++...... ....++|||+|||.++|+++|+++|+.||.|.++.+++
T Consensus 81 ~~~~~~~~~~~-------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~ 129 (175)
T 3nmr_A 81 QMKPADSEKNN-------------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILR 129 (175)
T ss_dssp EEEECGGGCCS-------------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred EEccccccccc-------------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEE
Confidence 88887654321 22456899999999999999999999999999999987
Q ss_pred C-----CeEEEEEeecCCCC
Q 017133 362 G-----KGCGFVQFANRLVS 376 (376)
Q Consensus 362 ~-----~g~afV~F~~~e~~ 376 (376)
+ +|+|||+|.+.++|
T Consensus 130 ~~~g~~~g~afV~f~~~~~A 149 (175)
T 3nmr_A 130 GPDGLSRGCAFVTFTTRAMA 149 (175)
T ss_dssp CTTSCEEEEEEEEESSHHHH
T ss_pred CCCCCEEEEEEEEECCHHHH
Confidence 4 79999999998865
No 27
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.96 E-value=1.3e-28 Score=207.64 Aligned_cols=164 Identities=16% Similarity=0.209 Sum_probs=121.8
Q ss_pred CCceEEECCCC-CCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 207 SDLSIFVGDLA-PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 207 ~~~~l~v~nlp-~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
++++|||+||| ..+++++|+++|+ .||.|.+|+++++ .+|||||+|.+.++|.+||+.|||..+.|+.|+|.|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~-~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFC-LYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHT-TTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHH-hcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 46799999999 8999999999996 9999999999865 368999999999999999999999999999999999
Q ss_pred cCCCCcCchhh-hchhhhhhhcCCCCCCCCCcC----CCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCe--EEEE
Q 017133 286 ATPKKASGYQQ-QYSSQALVLAGGPGSNGARVQ----GSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEI--LSVK 358 (376)
Q Consensus 286 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i--~~~~ 358 (376)
++.+....... ..................... .......++.++|||+|||+++|+++|+++|+.||.| .+++
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 97653211000 000000000000000000000 0011224567899999999999999999999999999 8999
Q ss_pred eeCC----CeEEEEEeecCCCC
Q 017133 359 IPVG----KGCGFVQFANRLVS 376 (376)
Q Consensus 359 i~~~----~g~afV~F~~~e~~ 376 (376)
+.++ +|+|||+|.+.++|
T Consensus 157 ~~~~~~~~~g~gfV~f~~~~~A 178 (205)
T 3tyt_A 157 VFSGKSERSSSGLLEWDSKSDA 178 (205)
T ss_dssp ECSCCSSSSEEEEEECSSHHHH
T ss_pred EEcCCCCCceEEEEEeCCHHHH
Confidence 8764 48999999998765
No 28
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.96 E-value=3.2e-28 Score=208.17 Aligned_cols=148 Identities=22% Similarity=0.417 Sum_probs=124.4
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
..++|||+|||.++++++|+++|+ .||.|.+|+++++..++.++|||||+|.+.++|.+|++.|++..|.|+.|+|.++
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFA-PFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 457999999999999999999995 9999999999999888999999999999999999999999999999999999998
Q ss_pred CCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCC----
Q 017133 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---- 362 (376)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~---- 362 (376)
.............. ......++|||+|||.++++++|+++|+.||.|.++++.++
T Consensus 106 ~~~~~~~~~~~~~~---------------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g 164 (216)
T 2qfj_A 106 SNIGQAQPIIDQLA---------------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTG 164 (216)
T ss_dssp SCCGGGHHHHHHHH---------------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTC
T ss_pred CCccccchhhhhhh---------------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCC
Confidence 76543311100000 01234579999999999999999999999999999999864
Q ss_pred --CeEEEEEeecCCCC
Q 017133 363 --KGCGFVQFANRLVS 376 (376)
Q Consensus 363 --~g~afV~F~~~e~~ 376 (376)
+|+|||+|.+.++|
T Consensus 165 ~~~g~afV~F~~~~~A 180 (216)
T 2qfj_A 165 KHKGYGFIEYEKAQSS 180 (216)
T ss_dssp CEEEEEEEEESSHHHH
T ss_pred CcCceEEEEecCHHHH
Confidence 69999999998865
No 29
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.95 E-value=1.3e-27 Score=206.04 Aligned_cols=167 Identities=20% Similarity=0.253 Sum_probs=126.5
Q ss_pred CCCCCceEEECCCCC-CCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 204 EACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
...++++|||+|||. ++++++|+++|+ .||.|.+|++.+++ +|||||+|.+.++|.+|++.|+|..+.|+.|+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~-~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFG-VYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHH-HHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 345678999999999 999999999995 99999999998874 68999999999999999999999999999999
Q ss_pred EeecCCCCcCchhhhchhhh---hhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCC-CeEEEE
Q 017133 283 IDVATPKKASGYQQQYSSQA---LVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFG-EILSVK 358 (376)
Q Consensus 283 v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G-~i~~~~ 358 (376)
|.|+................ ......................++.++|||+|||.++++++|+++|+.|| .|.+++
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 99998653221100000000 00000000000011111123345679999999999999999999999999 999999
Q ss_pred ee-CCCeEEEEEeecCCCC
Q 017133 359 IP-VGKGCGFVQFANRLVS 376 (376)
Q Consensus 359 i~-~~~g~afV~F~~~e~~ 376 (376)
+. +++|+|||+|.+.++|
T Consensus 184 i~~~~~g~afV~f~~~~~A 202 (229)
T 2adc_A 184 FFQKDRKMALIQMGSVEEA 202 (229)
T ss_dssp ECSSSTTCEEEEESSHHHH
T ss_pred EEECCCcEEEEEECCHHHH
Confidence 95 4899999999998865
No 30
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.95 E-value=3.7e-27 Score=209.88 Aligned_cols=168 Identities=20% Similarity=0.332 Sum_probs=126.4
Q ss_pred CCCCceEEECCCCCCCcHHHHH----HHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~----~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 280 (376)
..++++|||+|||.++++++|+ ++|+ .||.|.+|++.+ +++++|||||+|.+.++|.+||+.|||..|.|+.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~-~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFS-QFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHh-ccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 4467899999999999999977 8995 999999998886 5789999999999999999999999999999999
Q ss_pred eEEeecCCCCcCchhhhch--hh-----------------hhhhc-CCCC------CCC---------------------
Q 017133 281 MRIDVATPKKASGYQQQYS--SQ-----------------ALVLA-GGPG------SNG--------------------- 313 (376)
Q Consensus 281 i~v~~~~~~~~~~~~~~~~--~~-----------------~~~~~-~~~~------~~~--------------------- 313 (376)
|+|.|++.+.......... .. ..... .... ...
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 9999997654311000000 00 00000 0000 000
Q ss_pred ----------------C----------------CcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeC
Q 017133 314 ----------------A----------------RVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV 361 (376)
Q Consensus 314 ----------------~----------------~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~ 361 (376)
. ...........+.++|||+|||.++++++|+++|+.||.|.+|++.+
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 0 00000112344678899999999999999999999999999999998
Q ss_pred CC-eEEEEEeecCCCC
Q 017133 362 GK-GCGFVQFANRLVS 376 (376)
Q Consensus 362 ~~-g~afV~F~~~e~~ 376 (376)
++ |+|||+|.+.++|
T Consensus 242 ~~~g~afV~f~~~~~A 257 (282)
T 3pgw_A 242 GRHDIAFVEFDNEVQA 257 (282)
T ss_pred CCCcEEEEEeCCHHHH
Confidence 76 9999999998875
No 31
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=2.4e-28 Score=200.21 Aligned_cols=135 Identities=28% Similarity=0.554 Sum_probs=120.7
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
++++|||+|||.++|+++|+++|+ .||.|.+|.+++++.++.++|||||+|.+.++|.+|++. +..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFG-KYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHT-TTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 467999999999999999999995 999999999999988999999999999999999999984 67899999999998
Q ss_pred CCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCC----
Q 017133 287 TPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG---- 362 (376)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~---- 362 (376)
.++... ....+|||+|||.++++++|+++|+.||.|.++.+.++
T Consensus 79 ~~~~~~--------------------------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g 126 (167)
T 2cjk_A 79 IPRDEQ--------------------------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTG 126 (167)
T ss_dssp CCHHHH--------------------------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSS
T ss_pred cchhhc--------------------------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCC
Confidence 764221 12458999999999999999999999999999999863
Q ss_pred --CeEEEEEeecCCCC
Q 017133 363 --KGCGFVQFANRLVS 376 (376)
Q Consensus 363 --~g~afV~F~~~e~~ 376 (376)
+|+|||+|.+.++|
T Consensus 127 ~~~g~afV~f~~~~~a 142 (167)
T 2cjk_A 127 QSRGFGFVTYDSADAV 142 (167)
T ss_dssp TTSEEEEEEESSHHHH
T ss_pred ccceEEEEEECCHHHH
Confidence 58999999998765
No 32
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.94 E-value=2.4e-27 Score=199.85 Aligned_cols=163 Identities=21% Similarity=0.257 Sum_probs=123.9
Q ss_pred CceEEECCCCC-CCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 208 DLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 208 ~~~l~v~nlp~-~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
+++|||+|||. ++++++|+++|+ .||.|.+|++.+++ +|||||+|.+.++|.+|++.|+|..+.|+.|+|.|+
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~-~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFG-VYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHH-TTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 57999999999 999999999995 99999999998764 689999999999999999999999999999999999
Q ss_pred CCCCcCchhhhchhhh---hhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCC-CeEEEEeeC-
Q 017133 287 TPKKASGYQQQYSSQA---LVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFG-EILSVKIPV- 361 (376)
Q Consensus 287 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G-~i~~~~i~~- 361 (376)
................ ......................++.++|||+|||..+++++|+++|+.|| .|.++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 8653221110000000 00000000000001111223345688999999999999999999999999 999999955
Q ss_pred CCeEEEEEeecCCCC
Q 017133 362 GKGCGFVQFANRLVS 376 (376)
Q Consensus 362 ~~g~afV~F~~~e~~ 376 (376)
++|+|||+|.+.++|
T Consensus 157 ~~g~afV~f~~~~~A 171 (198)
T 1qm9_A 157 DRKMALIQMGSVEEA 171 (198)
T ss_dssp TSSCEEEECSSHHHH
T ss_pred CCcEEEEEeCCHHHH
Confidence 789999999998765
No 33
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=8.5e-26 Score=190.34 Aligned_cols=150 Identities=16% Similarity=0.343 Sum_probs=117.4
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhC----C-------CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKY----P-------SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~----g-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~ 275 (376)
.+++|||+|||.++++++|+++|+ .| | .|.++.+ ++++|||||+|.+.++|.+|+ .|+|..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~-~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHH-HHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHH-HHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 457999999999999999999996 89 4 4555554 455799999999999999999 899999
Q ss_pred ecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeE
Q 017133 276 CSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355 (376)
Q Consensus 276 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~ 355 (376)
|.|+.|+|.++............ .................++|||+|||..+++++|+++|+.||.|.
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~ 142 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSEN------------PSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLK 142 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSC------------SSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEE
T ss_pred EcCceEEEeCCCCCCCCCCCcCC------------CcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc
Confidence 99999999999776433110000 000000011122335678999999999999999999999999999
Q ss_pred EEEeeCC------CeEEEEEeecCCCC
Q 017133 356 SVKIPVG------KGCGFVQFANRLVS 376 (376)
Q Consensus 356 ~~~i~~~------~g~afV~F~~~e~~ 376 (376)
++.+.++ +|+|||+|.+.++|
T Consensus 143 ~~~~~~~~~~~~~~g~afV~f~~~~~a 169 (198)
T 2yh0_A 143 AFNLVKDSATGLSKGYAFCEYVDINVT 169 (198)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSSSHH
T ss_pred EEEEeecCCCCCcceEEEEEECCHHHH
Confidence 9999864 69999999999875
No 34
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=4.8e-26 Score=187.42 Aligned_cols=130 Identities=19% Similarity=0.457 Sum_probs=114.0
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhC----C-------CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKY----P-------SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~----g-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~ 275 (376)
+.++|||+|||.++|+++|+++|+ .| | .|.++.+. +++|||||+|.+.++|.+|+ .|+|..
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~-~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHH-HHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 467999999999999999999996 88 6 66666654 34789999999999999999 899999
Q ss_pred ecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeE
Q 017133 276 CSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEIL 355 (376)
Q Consensus 276 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~ 355 (376)
+.|+.|+|.++...... ...++|||+|||.++|+++|+++|+.||.|.
T Consensus 75 ~~g~~i~v~~~~~~~~~--------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 122 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPL--------------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLK 122 (172)
T ss_dssp ETTEECEEECCSSCCCC--------------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred ecCceeeecCCcccCCC--------------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCce
Confidence 99999999987654221 2267999999999999999999999999999
Q ss_pred EEEeeCC------CeEEEEEeecCCCC
Q 017133 356 SVKIPVG------KGCGFVQFANRLVS 376 (376)
Q Consensus 356 ~~~i~~~------~g~afV~F~~~e~~ 376 (376)
++.+.++ +|+|||+|.+.++|
T Consensus 123 ~v~i~~~~~~g~~~g~afV~f~~~~~A 149 (172)
T 2g4b_A 123 AFNLVKDSATGLSKGYAFCEYVDINVT 149 (172)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSTTHH
T ss_pred EEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 9999864 69999999999875
No 35
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.94 E-value=4.5e-26 Score=200.18 Aligned_cols=128 Identities=33% Similarity=0.537 Sum_probs=116.6
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
.....++|||+|||.++|+++|+++|+ .||.|..|.+.++ +|||||+|.+.++|.+|+..|+|..+.|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFE-RYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTG-GGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 345667999999999999999999995 9999999998643 689999999999999999999999999999999
Q ss_pred eecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCC-
Q 017133 284 DVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG- 362 (376)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~- 362 (376)
.++.+ .++|||+|||..+|+++|+++|+.||.|.+|.++++
T Consensus 91 ~~a~~--------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~ 132 (261)
T 3sde_A 91 RFATH--------------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD 132 (261)
T ss_dssp EECCC--------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred eeccc--------------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC
Confidence 99864 358999999999999999999999999999999853
Q ss_pred ----CeEEEEEeecCCCC
Q 017133 363 ----KGCGFVQFANRLVS 376 (376)
Q Consensus 363 ----~g~afV~F~~~e~~ 376 (376)
+|+|||+|.+.++|
T Consensus 133 ~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 133 RGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp TSCEEEEEEEEESSHHHH
T ss_pred CCCcCcEEEEEeCCHHHH
Confidence 79999999998765
No 36
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=5.9e-27 Score=193.47 Aligned_cols=139 Identities=19% Similarity=0.426 Sum_probs=118.1
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
.....++|||+|||.++++++|+++|+ .||.+.. .++++..++.++|||||+|.+.++|.+|+ .|+|..+.|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAIS-ELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 344678999999999999999999995 8887766 33444456889999999999999999999 59999999999999
Q ss_pred eecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCCeEEEEee--C
Q 017133 284 DVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIP--V 361 (376)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~--~ 361 (376)
.++..+... .....++|||+|||.++++++|+++|+.||.|..+ .. +
T Consensus 86 ~~~~~~~~~------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~ 134 (175)
T 1fje_B 86 EKPKGRDSK------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGK 134 (175)
T ss_dssp ECCCCSSCS------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSS
T ss_pred ecCCCcccc------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCC
Confidence 999875332 12356799999999999999999999999999888 22 3
Q ss_pred CCeEEEEEeecCCCC
Q 017133 362 GKGCGFVQFANRLVS 376 (376)
Q Consensus 362 ~~g~afV~F~~~e~~ 376 (376)
++|+|||+|.+.++|
T Consensus 135 ~~g~afV~f~~~~~A 149 (175)
T 1fje_B 135 SKGIAYIEFKSEADA 149 (175)
T ss_dssp CCSEEEEECSSHHHH
T ss_pred CceEEEEEECCHHHH
Confidence 679999999998765
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=8.5e-24 Score=171.29 Aligned_cols=146 Identities=24% Similarity=0.329 Sum_probs=115.1
Q ss_pred EEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCC-----CCcccccccc-cCCCCCccCCCCCceEEECCCC
Q 017133 144 NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT-----DQPFRLNWAT-FSGSDRRTEACSDLSIFVGDLA 217 (376)
Q Consensus 144 ~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~l~v~nlp 217 (376)
.++++.+.. +++|||||+|.+.++|++|++.+++...... .......... .............++|||+|||
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 467777754 6899999999999999999988775322111 1111111111 1111222334557899999999
Q ss_pred CCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcC
Q 017133 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (376)
Q Consensus 218 ~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~ 292 (376)
+++++++|+++|+ .||.|..|.+.+++.++.++|||||+|.+.++|.+||+.|||..|+|+.|+|.|++++...
T Consensus 80 ~~~~~~~l~~~F~-~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFE-KYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHH-HHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHH-hcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 9999999999995 9999999999999889999999999999999999999999999999999999999887544
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=9.3e-23 Score=155.55 Aligned_cols=109 Identities=22% Similarity=0.439 Sum_probs=75.3
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecC
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 287 (376)
+++|||+|||+++++++|+++|+ .||.|.+|+|+++. +.++|||||+|.+.++|.+||+.|+|..|+|+.|+|.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~-~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHh-ccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 56899999999999999999996 99999999999985 4589999999999999999999999999999999999998
Q ss_pred CCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHH
Q 017133 288 PKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDED 343 (376)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~ 343 (376)
.+..+... ........++|||+|||+++|++.
T Consensus 82 ~~~~~~~~------------------------~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAE------------------------LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC----------------------------------------------------
T ss_pred Cccccccc------------------------cccccCCCCceEeCCCCCCccccc
Confidence 76543200 111122345799999999999874
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=5.5e-22 Score=159.03 Aligned_cols=128 Identities=23% Similarity=0.350 Sum_probs=110.3
Q ss_pred CCccceEEEEecCHHHHHHHHHHh-cCCcCCCCCCcccccccccCC-----------CCCccCCCCCceEEECCCCCCCc
Q 017133 154 GQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTDQPFRLNWATFSG-----------SDRRTEACSDLSIFVGDLAPDVT 221 (376)
Q Consensus 154 g~~~g~afV~f~~~~~a~~a~~~l-~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~v~nlp~~~t 221 (376)
...+|+++|+|.+.++|++|++.+ ++..+++ .+++.++.... ..........++|||+|||++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 467899999999999999999999 9988855 67777665321 12234455678999999999999
Q ss_pred HHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCC
Q 017133 222 DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKK 290 (376)
Q Consensus 222 ~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~ 290 (376)
+++|+++|+ .||.|.+|++.++ ++|||||+|.+.++|.+|++.|||..|+|+.|+|.|++++.
T Consensus 87 ~~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 87 KTELERAFG-YYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CHHHHHHHH-HHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHH-hhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999996 9999999999876 57999999999999999999999999999999999998763
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=143.34 Aligned_cols=81 Identities=30% Similarity=0.536 Sum_probs=77.7
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
..++|||+|||.++|+++|+++|+ .||.|.+|++.+|+.++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFS-SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 017133 287 TP 288 (376)
Q Consensus 287 ~~ 288 (376)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=2.7e-21 Score=147.41 Aligned_cols=107 Identities=24% Similarity=0.427 Sum_probs=72.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
..++|||+|||+++++++|+++|+.||.|.+|+|++++ +.++|||||+|.+.++|.+|++.|++..+ .++.|++.+
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~--~g~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL--NDRKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEE--CCEEEEEEE
Confidence 36789999999999999999999999999999999986 45899999999999999999999999999 567888888
Q ss_pred cccCCCCCc---cCCCCCceEEECCCCCCCcHHH
Q 017133 194 ATFSGSDRR---TEACSDLSIFVGDLAPDVTDSI 224 (376)
Q Consensus 194 ~~~~~~~~~---~~~~~~~~l~v~nlp~~~t~~~ 224 (376)
+........ ......++|||+|||+++|++.
T Consensus 80 a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SSCCCC----------------------------
T ss_pred CCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 765432211 2233445799999999999863
No 42
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=4.4e-20 Score=139.04 Aligned_cols=85 Identities=12% Similarity=0.210 Sum_probs=80.0
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
.+.++|||+|||+++++++|+++|+ .||.|.+|+|++|+.+++++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCR-KYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3567999999999999999999995 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCc
Q 017133 286 ATPKKA 291 (376)
Q Consensus 286 ~~~~~~ 291 (376)
+.....
T Consensus 83 a~~~~~ 88 (110)
T 3s8s_A 83 DIKGQQ 88 (110)
T ss_dssp CSTTHH
T ss_pred CCCCcH
Confidence 976543
No 43
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=6.9e-21 Score=149.18 Aligned_cols=126 Identities=20% Similarity=0.297 Sum_probs=83.6
Q ss_pred ceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCee
Q 017133 158 GYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK 237 (376)
Q Consensus 158 g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~ 237 (376)
-++|++|.+...+..|+..+++....+.+. ..+ ..........++|||+|||.++++++|+++|+ .||.|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~---~~~-----~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~ 75 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS---MSY-----GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFE-KYGRVG 75 (135)
T ss_dssp ---------------------------------CCS-----CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHG-GGSCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC---CCc-----CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEE
Confidence 368889999999999999888866543321 111 22233444578999999999999999999996 999999
Q ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcC
Q 017133 238 GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (376)
Q Consensus 238 ~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~ 292 (376)
.|.+..++.++.++|||||+|.+.++|.+||+.|+|..|.|+.|+|.|+++....
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999999888999999999999999999999999999999999999999886544
No 44
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=9.1e-21 Score=137.89 Aligned_cols=84 Identities=13% Similarity=0.308 Sum_probs=77.1
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC-CceecCcceEEee
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN-GVYCSSRPMRIDV 285 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~-g~~~~g~~i~v~~ 285 (376)
+++|||+|||.++|++||+++|+ .|| .|.+|++++|+.++.++|||||+|.+.++|.+||+.|+ +..++|+.|+|.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~-~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQ-SHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHH-HHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-HhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 46899999999999999999995 999 79999999999999999999999999999999998875 5679999999999
Q ss_pred cCCCCcC
Q 017133 286 ATPKKAS 292 (376)
Q Consensus 286 ~~~~~~~ 292 (376)
+.++...
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred cCCCCCC
Confidence 9887544
No 45
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=2.3e-19 Score=128.49 Aligned_cols=82 Identities=37% Similarity=0.696 Sum_probs=78.0
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecC
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 287 (376)
+.+|||+|||.++++++|+++|+ .||.|.++.+.++..++.++|||||+|.+.++|.+|++.|||..++|+.|+|.|+.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHT-TSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 35899999999999999999995 99999999999998899999999999999999999999999999999999999998
Q ss_pred CCC
Q 017133 288 PKK 290 (376)
Q Consensus 288 ~~~ 290 (376)
++.
T Consensus 80 ~~~ 82 (83)
T 3md1_A 80 KLE 82 (83)
T ss_dssp CCC
T ss_pred cCC
Confidence 763
No 46
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=9.8e-20 Score=134.50 Aligned_cols=82 Identities=27% Similarity=0.465 Sum_probs=76.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||+++|+++|+++|+.||.|.+|++++|+.+|+++|||||+|.+.++|.+|++.|++..+ .++.|+|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~gr~l~V~ 94 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL--QSKTIKVS 94 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE--CCEEEEEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999 56889998
Q ss_pred cccc
Q 017133 193 WATF 196 (376)
Q Consensus 193 ~~~~ 196 (376)
|+.+
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 8864
No 47
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=2e-19 Score=130.04 Aligned_cols=83 Identities=35% Similarity=0.675 Sum_probs=76.6
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
.+.++|||+|||.++++++|+++|+ .||.|.++.+.+++.++.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 3567999999999999999999996 999999999999988899999999999999999999999999999999999999
Q ss_pred cCCC
Q 017133 286 ATPK 289 (376)
Q Consensus 286 ~~~~ 289 (376)
++++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9864
No 48
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1.4e-19 Score=147.31 Aligned_cols=130 Identities=18% Similarity=0.272 Sum_probs=80.3
Q ss_pred EEecCHHHHHHHHHHhcCCcCCCCCCcccccccccC---------------CCCCccCCCCCceEEECCCCCCCcHHHHH
Q 017133 162 VEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWATFS---------------GSDRRTEACSDLSIFVGDLAPDVTDSILQ 226 (376)
Q Consensus 162 V~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~v~nlp~~~t~~~l~ 226 (376)
.+|.+.++|..++..+++......++..+..+.... .........+.++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 788999999999999888776555555555442211 01112233456789999999999999999
Q ss_pred HHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcC
Q 017133 227 ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (376)
Q Consensus 227 ~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~ 292 (376)
++|+ .||.|..|.|+.++.++.++|||||+|.+.++|.+||..|||..|.|+.|.|.|+..+...
T Consensus 91 ~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHhh-cCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 9996 9999999999999989999999999999999999999999999999999999999876543
No 49
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.80 E-value=4.1e-20 Score=134.91 Aligned_cols=81 Identities=20% Similarity=0.402 Sum_probs=75.0
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCC--eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eecCcc
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPS--VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV----YCSSRP 280 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~--i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~----~~~g~~ 280 (376)
.-.+|||+|||+++|+++|+++|+ .||. |.+|++.+|+.+++++|||||+|.+.++|.+||+.|||. .|+||.
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 346899999999999999999995 9995 678999999999999999999999999999999999996 489999
Q ss_pred eEEeecCC
Q 017133 281 MRIDVATP 288 (376)
Q Consensus 281 i~v~~~~~ 288 (376)
|.|+|++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999974
No 50
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.80 E-value=5.9e-20 Score=140.22 Aligned_cols=104 Identities=18% Similarity=0.312 Sum_probs=92.7
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
.++++|||+|||.++++++|+++|+ .||.|..|.+..+ +.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFG-KYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4567999999999999999999996 9999999999876 45689999999999999999999999999999999999
Q ss_pred cCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEEecCCCCCCHHHHHhhhccCCC
Q 017133 286 ATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGE 353 (376)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~F~~~G~ 353 (376)
+.++... .+++...++++|.++|+.||.
T Consensus 82 a~~~~~~----------------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF----------------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT----------------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh----------------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 9865332 267778889999999999984
No 51
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.1e-19 Score=133.36 Aligned_cols=89 Identities=26% Similarity=0.439 Sum_probs=82.9
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
....+.++|||+|||.++++++|+++|+ .||.|..|.+.+++.++.++|||||+|.+.++|.+||+.|||..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFR-PFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTST-TTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 3455678999999999999999999995 999999999999988999999999999999999999999999999999999
Q ss_pred EeecCCCCcC
Q 017133 283 IDVATPKKAS 292 (376)
Q Consensus 283 v~~~~~~~~~ 292 (376)
|.|++++...
T Consensus 89 v~~a~~~~~~ 98 (103)
T 2cq0_A 89 VEWAKPSTNS 98 (103)
T ss_dssp EEESSCCCCS
T ss_pred EEECCCCCCC
Confidence 9999887554
No 52
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=4.2e-19 Score=130.54 Aligned_cols=86 Identities=31% Similarity=0.636 Sum_probs=80.9
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
.++++|||+|||.++++++|+++|+ .||.|..|.+.+++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFE-PFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 3567999999999999999999995 999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCcC
Q 017133 286 ATPKKAS 292 (376)
Q Consensus 286 ~~~~~~~ 292 (376)
+.++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9887554
No 53
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=6.1e-19 Score=132.57 Aligned_cols=88 Identities=28% Similarity=0.662 Sum_probs=81.7
Q ss_pred ccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 017133 202 RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (376)
Q Consensus 202 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i 281 (376)
.......++|||+|||.++++++|+++|+ .||.|..|.+.+++.++.++|||||+|.+.++|.+|++.|+|..|+|+.|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFE-PFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHT-TTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455678999999999999999999995 99999999999998899999999999999999999999999999999999
Q ss_pred EEeecCCCC
Q 017133 282 RIDVATPKK 290 (376)
Q Consensus 282 ~v~~~~~~~ 290 (376)
+|.+++++.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999998763
No 54
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=3e-19 Score=131.55 Aligned_cols=85 Identities=26% Similarity=0.457 Sum_probs=80.3
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
++++|||+|||.++++++|+++|+ .||.|.+|.+.+++.++.++|||||+|.+.++|.+|++.|+|..++|+.|+|.|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCS-NVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEc
Confidence 357999999999999999999996 9999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCcC
Q 017133 287 TPKKAS 292 (376)
Q Consensus 287 ~~~~~~ 292 (376)
.++...
T Consensus 80 ~~~~~~ 85 (96)
T 2x1f_A 80 SNSDIS 85 (96)
T ss_dssp SCSSGG
T ss_pred CCCCCC
Confidence 987654
No 55
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=6.9e-19 Score=130.67 Aligned_cols=86 Identities=19% Similarity=0.408 Sum_probs=80.0
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
...+.++|||+|||.++++++|+++|+ .||.|..|.+..+. ++.++|||||+|.+.++|.+|++.|||..++|+.|+|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICK-AHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344668999999999999999999995 99999999999997 7999999999999999999999999999999999999
Q ss_pred eecCCCCc
Q 017133 284 DVATPKKA 291 (376)
Q Consensus 284 ~~~~~~~~ 291 (376)
.|++++..
T Consensus 91 ~~a~~~~~ 98 (100)
T 2do4_A 91 AISNSGPS 98 (100)
T ss_dssp EECCCCSC
T ss_pred EECCCCCC
Confidence 99988754
No 56
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5e-19 Score=130.16 Aligned_cols=85 Identities=24% Similarity=0.407 Sum_probs=79.9
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
....+.++|||+|||.++++++|+++|+ .||.|..|.+.+++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHH-TTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4455678999999999999999999995 999999999999998899999999999999999999999999999999999
Q ss_pred EeecCC
Q 017133 283 IDVATP 288 (376)
Q Consensus 283 v~~~~~ 288 (376)
|.|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999875
No 57
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=6.5e-19 Score=134.39 Aligned_cols=89 Identities=31% Similarity=0.640 Sum_probs=82.9
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
....+.++|||+|||.++++++|+++|+ .||.|..|.+.+++.++.++|||||+|.+.++|.+||+.|+|..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFA-PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4455678999999999999999999996 999999999999988899999999999999999999999999999999999
Q ss_pred EeecCCCCcC
Q 017133 283 IDVATPKKAS 292 (376)
Q Consensus 283 v~~~~~~~~~ 292 (376)
|.|++++...
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999887554
No 58
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4e-19 Score=131.71 Aligned_cols=86 Identities=27% Similarity=0.367 Sum_probs=81.1
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
.+.++|||+|||.++++++|+++|+ .||.|..|.+.+++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFS-AYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4668999999999999999999995 999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCCcC
Q 017133 286 ATPKKAS 292 (376)
Q Consensus 286 ~~~~~~~ 292 (376)
++++...
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9987554
No 59
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=4.7e-19 Score=135.16 Aligned_cols=88 Identities=26% Similarity=0.440 Sum_probs=81.9
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
...+.++|||+|||.++++++|+++|+ .||.|.+|+|.+++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFM-PFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHG-GGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 344568999999999999999999995 9999999999999888999999999999999999999999999999999999
Q ss_pred eecCCCCcC
Q 017133 284 DVATPKKAS 292 (376)
Q Consensus 284 ~~~~~~~~~ 292 (376)
.|++++...
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpz_A 100 QLKRSKNDS 108 (115)
T ss_dssp ECCCCSCCC
T ss_pred EEcCCCCcC
Confidence 999887554
No 60
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=6.9e-19 Score=139.03 Aligned_cols=87 Identities=24% Similarity=0.428 Sum_probs=79.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+|++++++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 115 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI--LNKRLK 115 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 446689999999999999999999999999999999999998999999999999999999999999999988 567888
Q ss_pred ccccccCCC
Q 017133 191 LNWATFSGS 199 (376)
Q Consensus 191 ~~~~~~~~~ 199 (376)
+.++.....
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 888875543
No 61
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.1e-19 Score=130.71 Aligned_cols=86 Identities=26% Similarity=0.485 Sum_probs=80.4
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..+.++|||+|||.++++++|+++|+ .||.|..|.+++++.++.++|||||+|.+.++|.+||+ |++..|.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFK-KFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHS-SSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34668999999999999999999995 99999999999998899999999999999999999998 99999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
++.++...
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99987554
No 62
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=3.3e-19 Score=128.25 Aligned_cols=81 Identities=25% Similarity=0.512 Sum_probs=77.1
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
.+.++|||+|||.++++++|+++|+ .||.|..+.+.++..++.++|||||+|.+.++|.+|++.|||..++|+.|+|.|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHG-GGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHh-ccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4568999999999999999999996 999999999999988899999999999999999999999999999999999999
Q ss_pred cC
Q 017133 286 AT 287 (376)
Q Consensus 286 ~~ 287 (376)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 63
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5e-19 Score=132.73 Aligned_cols=89 Identities=28% Similarity=0.496 Sum_probs=82.5
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
......++|||+|||.++++++|+++|+ .||.|..|.+..++.++.++|||||+|.+.++|.+|++.|++..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFL-QAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3445678999999999999999999995 999999999999988899999999999999999999999999999999999
Q ss_pred EeecCCCCcC
Q 017133 283 IDVATPKKAS 292 (376)
Q Consensus 283 v~~~~~~~~~ 292 (376)
|.|+.++...
T Consensus 89 v~~a~~~~~~ 98 (105)
T 1x5u_A 89 VNKASAHNKN 98 (105)
T ss_dssp EEETTTTSCC
T ss_pred EEECCCCCcC
Confidence 9999887554
No 64
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=133.11 Aligned_cols=89 Identities=24% Similarity=0.402 Sum_probs=82.3
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
....+.++|||+|||.++++++|+++|+ .||.|..|.+..++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFE-KYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3445678999999999999999999995 999999999999988899999999999999999999999999999999999
Q ss_pred EeecCCCCcC
Q 017133 283 IDVATPKKAS 292 (376)
Q Consensus 283 v~~~~~~~~~ 292 (376)
|.|++.....
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dnm_A 87 VQVARYGRRD 96 (103)
T ss_dssp EEECSSCCSC
T ss_pred EEECCcCCCC
Confidence 9999876544
No 65
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=1.2e-19 Score=132.02 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=72.6
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
.+|||+|||+++++++|+++|+ .|| .|.++++..++.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHH-TTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHH-HhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999999999999999995 999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCc
Q 017133 287 TPKKA 291 (376)
Q Consensus 287 ~~~~~ 291 (376)
.+...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87644
No 66
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=9.4e-19 Score=129.65 Aligned_cols=83 Identities=27% Similarity=0.393 Sum_probs=78.2
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~ 275 (376)
.....++|||+|||.++++++|+++|+ .||.|.. +++.+++.+++++|||||+|.+.++|.+|++.|||..
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHT-TTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 445678999999999999999999995 9999999 9999998899999999999999999999999999999
Q ss_pred ecCcceEEeecC
Q 017133 276 CSSRPMRIDVAT 287 (376)
Q Consensus 276 ~~g~~i~v~~~~ 287 (376)
+.|+.|+|.+++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999974
No 67
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.6e-19 Score=129.22 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=78.1
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
...+.++|||+|||.++++++|+++|+ .||.|..|.+..++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFS-KYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTT-TTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 344668999999999999999999995 9999999999999888999999999999999999999999999999999999
Q ss_pred eecC
Q 017133 284 DVAT 287 (376)
Q Consensus 284 ~~~~ 287 (376)
.|++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 68
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=132.27 Aligned_cols=87 Identities=25% Similarity=0.517 Sum_probs=81.6
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..+.++|||+|||.++++++|+++|+ .||.|..|.+.+++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHT-TTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhh-ccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44678999999999999999999995 99999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
|++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99887654
No 69
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.9e-19 Score=132.19 Aligned_cols=85 Identities=24% Similarity=0.440 Sum_probs=80.0
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..++++|||+|||.++++++|+++|+ .||.|..|.+..++.++.++|||||+|.+.++|.+|++.|||..|+|+.|+|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-ccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 44568999999999999999999996 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 017133 285 VATPKK 290 (376)
Q Consensus 285 ~~~~~~ 290 (376)
|+.++.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 997753
No 70
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=5.5e-19 Score=137.09 Aligned_cols=87 Identities=25% Similarity=0.443 Sum_probs=81.3
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
....+.++|||+|||.++++++|+++|+ .||.|..|++.+++.++.++|||||+|.+.++|.+||+.|+|..|+|+.|+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFS-KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHT-TTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445678999999999999999999995 999999999999998999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q 017133 283 IDVATPKK 290 (376)
Q Consensus 283 v~~~~~~~ 290 (376)
|.|+.++.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998764
No 71
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=130.65 Aligned_cols=86 Identities=31% Similarity=0.660 Sum_probs=80.6
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGA-KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
.+.++|||+|||.++++++|+++|+ .||.|..+ .+.+++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFS-AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHH-TTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3567999999999999999999995 99999999 999998889999999999999999999999999999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
|+.++...
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99887554
No 72
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.79 E-value=1.6e-18 Score=129.95 Aligned_cols=86 Identities=22% Similarity=0.401 Sum_probs=79.8
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC---cce
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS---RPM 281 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g---~~i 281 (376)
....++|||+|||.++++++|+++|+ .||.|..|.+.++. ++.++|||||+|.+.++|.+||+.|||..+.| +.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQ-PFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34578999999999999999999995 99999999999997 69999999999999999999999999999988 999
Q ss_pred EEeecCCCCcC
Q 017133 282 RIDVATPKKAS 292 (376)
Q Consensus 282 ~v~~~~~~~~~ 292 (376)
+|.|++.+..+
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999887654
No 73
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.6e-19 Score=131.31 Aligned_cols=87 Identities=33% Similarity=0.583 Sum_probs=81.1
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..+.++|||+|||.++++++|+++|+ .||.|..|.+.+++.++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFS-KYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHH-HHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44668999999999999999999995 99999999999998889999999999999999999999999999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
|++++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 74
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=130.04 Aligned_cols=87 Identities=31% Similarity=0.628 Sum_probs=80.4
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
......++|||+|||.++++++|+++|+ .||.|..|.+..+ ++.++|||||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFS-PFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTT-TTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3445678999999999999999999995 9999999999998 789999999999999999999999999999999999
Q ss_pred EeecCCCCcC
Q 017133 283 IDVATPKKAS 292 (376)
Q Consensus 283 v~~~~~~~~~ 292 (376)
|.|++++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2d9p_A 87 VALAQRKEER 96 (103)
T ss_dssp EEECSSCCCC
T ss_pred EEEecccccC
Confidence 9999887654
No 75
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=132.14 Aligned_cols=88 Identities=18% Similarity=0.458 Sum_probs=82.1
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC------Cceec
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN------GVYCS 277 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~------g~~~~ 277 (376)
...+.++|||+|||.++++++|+++|+ .||.|..|.+.+++.++.++|||||+|.+.++|.+||+.|+ +..|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQ-QFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 345678999999999999999999995 99999999999999999999999999999999999999999 99999
Q ss_pred CcceEEeecCCCCcC
Q 017133 278 SRPMRIDVATPKKAS 292 (376)
Q Consensus 278 g~~i~v~~~~~~~~~ 292 (376)
|+.|+|.|+.++...
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999887554
No 76
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=129.03 Aligned_cols=85 Identities=24% Similarity=0.429 Sum_probs=79.8
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCee-EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc----
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVK-GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP---- 280 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~---- 280 (376)
...++|||+|||.++++++|+++|+ .||.|. .|++++++.++.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFA-TMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHH-HTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHH-HhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 4568999999999999999999995 999999 9999999989999999999999999999999999999999999
Q ss_pred eEEeecCCCCc
Q 017133 281 MRIDVATPKKA 291 (376)
Q Consensus 281 i~v~~~~~~~~ 291 (376)
|+|.|+++...
T Consensus 86 l~v~~a~~~~~ 96 (99)
T 2div_A 86 FKLNYATYSGP 96 (99)
T ss_dssp CCEEETTCCSS
T ss_pred EEEeecCCCCC
Confidence 99999987643
No 77
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.8e-19 Score=129.89 Aligned_cols=86 Identities=17% Similarity=0.386 Sum_probs=79.3
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCC---CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSN---TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
.+.++|||+|||.++++++|+++|+ .||.|..|.+.++.. ++.++|||||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFS-KVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 3567999999999999999999995 999999999998876 568999999999999999999999999999999999
Q ss_pred EeecCCCCcC
Q 017133 283 IDVATPKKAS 292 (376)
Q Consensus 283 v~~~~~~~~~ 292 (376)
|.|++++...
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999887544
No 78
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=130.87 Aligned_cols=88 Identities=18% Similarity=0.360 Sum_probs=81.5
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEec-CCCCCcceEEEEEeCCHHHHHHHHHHh-CCceecCcce
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIID-SNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPM 281 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~Al~~l-~g~~~~g~~i 281 (376)
.....++|||+|||.++++++|+++|+ .||.|..|.++++ +.++.++|||||+|.+.++|.+||+.| |+..|.|+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFS-TFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHH-ccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 445678999999999999999999995 9999999999998 778999999999999999999999999 9999999999
Q ss_pred EEeecCCCCcC
Q 017133 282 RIDVATPKKAS 292 (376)
Q Consensus 282 ~v~~~~~~~~~ 292 (376)
+|.|++++...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999887554
No 79
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=1.7e-19 Score=133.78 Aligned_cols=83 Identities=27% Similarity=0.327 Sum_probs=78.6
Q ss_pred CCceEEECCCCC------CCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC-c
Q 017133 207 SDLSIFVGDLAP------DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS-R 279 (376)
Q Consensus 207 ~~~~l~v~nlp~------~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g-~ 279 (376)
.+++|||+|||. ++++++|+++|+ .||.|.+|+|++++.+++++|||||+|.+.++|.+||+.|||..|.| +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~-~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFS-KAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHH-TTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHH-hcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 457999999999 999999999996 99999999999999999999999999999999999999999999999 9
Q ss_pred ceEEeecCCCC
Q 017133 280 PMRIDVATPKK 290 (376)
Q Consensus 280 ~i~v~~~~~~~ 290 (376)
.|+|.++.++.
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999997653
No 80
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=9.3e-19 Score=132.39 Aligned_cols=87 Identities=22% Similarity=0.412 Sum_probs=80.8
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
...+.++|||+|||.++++++|+++|+ .||.|..|.+..+..++.++|||||+|.+.++|.+|+..|||..|+|+.|+|
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFC-DYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 344668999999999999999999995 9999999999999889999999999999999999999999999999999999
Q ss_pred eecCCCCc
Q 017133 284 DVATPKKA 291 (376)
Q Consensus 284 ~~~~~~~~ 291 (376)
.|+.++..
T Consensus 101 ~~a~~~~~ 108 (110)
T 1oo0_B 101 DWCFVKGP 108 (110)
T ss_dssp EESEESSC
T ss_pred EEcccCCC
Confidence 99987643
No 81
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=1e-18 Score=131.22 Aligned_cols=88 Identities=17% Similarity=0.399 Sum_probs=81.5
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee---cCcc
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC---SSRP 280 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~---~g~~ 280 (376)
.....++|||+|||.++++++|+++|+ .||.|..|.++.++.++.++|||||+|.+.++|.+|++.||+..+ .|+.
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFE-EFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHH-HHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 345678999999999999999999995 999999999999988999999999999999999999999999998 8999
Q ss_pred eEEeecCCCCcC
Q 017133 281 MRIDVATPKKAS 292 (376)
Q Consensus 281 i~v~~~~~~~~~ 292 (376)
|+|.|+..+...
T Consensus 88 l~v~~a~~~~~~ 99 (106)
T 2dgp_A 88 IQVKPADSESRG 99 (106)
T ss_dssp CEEEECCCCSCC
T ss_pred EEEEECCccccc
Confidence 999999887554
No 82
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=136.89 Aligned_cols=88 Identities=22% Similarity=0.474 Sum_probs=82.2
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
.....++|||+|||.++++++|+++|+ .||.|.+|++++++.+++++|||||+|.+.++|.+||+.|||..|.|+.|+|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFE-RYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHH-HHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345668999999999999999999995 9999999999999989999999999999999999999999999999999999
Q ss_pred eecCCCCcC
Q 017133 284 DVATPKKAS 292 (376)
Q Consensus 284 ~~~~~~~~~ 292 (376)
.|++.+..+
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999887554
No 83
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=132.17 Aligned_cols=86 Identities=21% Similarity=0.444 Sum_probs=79.8
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
....++|||+|||.++++++|+++|+ .||.|..|.+..+. ++.++|||||+|.+.++|.+|++.|+|..|.|+.|+|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFG-KHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHH-TSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567999999999999999999995 99999999999997 89999999999999999999999999999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
|++.+...
T Consensus 82 ~a~~~~~~ 89 (116)
T 2fy1_A 82 QAKKPSFQ 89 (116)
T ss_dssp ECCCSSCS
T ss_pred ECCCCCCC
Confidence 99876543
No 84
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=2.4e-18 Score=128.47 Aligned_cols=86 Identities=20% Similarity=0.473 Sum_probs=79.5
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
...+.++|||+|||.++++++|+++|+ .|| |..|.+++++.+++++|||||+|.+.++|.+|| .||+..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFK-DLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTT-TSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHH-hCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 344678999999999999999999996 896 999999999999999999999999999999999 89999999999999
Q ss_pred eecCCCCcC
Q 017133 284 DVATPKKAS 292 (376)
Q Consensus 284 ~~~~~~~~~ 292 (376)
.|+.++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dng_A 88 DIAEGRKQD 96 (103)
T ss_dssp EECCCCCCC
T ss_pred EEecCCCCC
Confidence 999887554
No 85
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=129.92 Aligned_cols=86 Identities=52% Similarity=0.913 Sum_probs=80.1
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhh-CCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce-ecCcceE
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSK-YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY-CSSRPMR 282 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~-~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~-~~g~~i~ 282 (376)
..+.++|||+|||.++++++|+++|+ . ||.|..|.++++. ++.++|||||+|.+.++|.+||+.|++.. |.|+.|+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFV-KVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHH-HHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 44668999999999999999999996 8 9999999999998 89999999999999999999999999999 9999999
Q ss_pred EeecCCCCcC
Q 017133 283 IDVATPKKAS 292 (376)
Q Consensus 283 v~~~~~~~~~ 292 (376)
|.++.++...
T Consensus 84 v~~a~~~~~~ 93 (104)
T 2dhg_A 84 LSVAIPKASR 93 (104)
T ss_dssp CCBCCCCCSC
T ss_pred EEEccCCCcC
Confidence 9999877554
No 86
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=6.8e-19 Score=130.96 Aligned_cols=78 Identities=21% Similarity=0.454 Sum_probs=72.5
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 288 (376)
++|||+|||.++++++|+++|+ .||.|..|.+..+ ++|||||+|.+.++|.+|++.|+|..+.|+.|+|.|+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFS-YYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHH-HHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 4799999999999999999995 9999999999876 689999999999999999999999999999999999988
Q ss_pred CCcC
Q 017133 289 KKAS 292 (376)
Q Consensus 289 ~~~~ 292 (376)
+...
T Consensus 75 ~~~~ 78 (101)
T 2hvz_A 75 MPRR 78 (101)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 7543
No 87
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1e-18 Score=133.91 Aligned_cols=84 Identities=29% Similarity=0.495 Sum_probs=78.4
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
....+.++|||+|||.++++++|+++|+ .||.|.+|++.+++.+++++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFL-PFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTT-TSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4455678999999999999999999995 999999999999988899999999999999999999999999999999999
Q ss_pred EeecC
Q 017133 283 IDVAT 287 (376)
Q Consensus 283 v~~~~ 287 (376)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99974
No 88
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=126.04 Aligned_cols=83 Identities=22% Similarity=0.406 Sum_probs=77.0
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCC-cceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGR-TKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~-~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
..++|||+|||.++++++|+++|+ .||.|..+.+..+..++. ++|+|||+|.+.++|.+|++.|||..++|+.|+|.+
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFS-TYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 457999999999999999999996 999999999999877665 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 017133 286 ATPKK 290 (376)
Q Consensus 286 ~~~~~ 290 (376)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97754
No 89
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=126.68 Aligned_cols=83 Identities=28% Similarity=0.499 Sum_probs=77.3
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
.....++|||+|||.++++++|+++|+ .||.|.+|.+..++. +.++|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~-~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFL-QAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEE
Confidence 344668999999999999999999995 999999999999976 899999999999999999999999999999999999
Q ss_pred eecCC
Q 017133 284 DVATP 288 (376)
Q Consensus 284 ~~~~~ 288 (376)
.|++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99864
No 90
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=139.39 Aligned_cols=85 Identities=21% Similarity=0.273 Sum_probs=78.8
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..++|||+|||+++++++|+++|+ .|| .|.+|+|++|+.+|+++|||||+|.+.++|.+||+.|||..|+|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIR-SIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHH-HTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 457999999999999999999995 999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
++.++...
T Consensus 133 ~a~~~~~~ 140 (156)
T 3n9u_C 133 PATRQNLS 140 (156)
T ss_dssp ECCHHHHH
T ss_pred EcCCCcch
Confidence 99875433
No 91
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=131.00 Aligned_cols=88 Identities=24% Similarity=0.334 Sum_probs=81.5
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCee--------EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK--------GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~ 275 (376)
.....++|||+|||.++++++|+++|+ .||.|. .|.+..++.+++++|||||+|.+.++|.+||+.|||..
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFK-QCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHT-TTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHH-hcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 345678999999999999999999995 999999 69999998899999999999999999999999999999
Q ss_pred ecCcceEEeecCCCCcC
Q 017133 276 CSSRPMRIDVATPKKAS 292 (376)
Q Consensus 276 ~~g~~i~v~~~~~~~~~ 292 (376)
|.|+.|+|.|++++...
T Consensus 90 ~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPPM 106 (113)
T ss_dssp ETTEECEEECSSCCCCS
T ss_pred cCCCEEEEEECCCCCCC
Confidence 99999999999887554
No 92
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=127.72 Aligned_cols=81 Identities=15% Similarity=0.200 Sum_probs=72.9
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceecCcceE
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPMR 282 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~i~ 282 (376)
..+.++|||+|||++++++||+++|+ .||.|.+|+|+++ +|||||+|++.++|.+|++.|++ ..|.|+.|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~-~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHH-HHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 34567999999999999999999996 9999999999865 68999999999999999998864 789999999
Q ss_pred EeecCCCCcC
Q 017133 283 IDVATPKKAS 292 (376)
Q Consensus 283 v~~~~~~~~~ 292 (376)
|.|++.+...
T Consensus 86 V~~A~~~~~~ 95 (105)
T 1sjq_A 86 IQFSNHKELK 95 (105)
T ss_dssp BCCCSSSSCC
T ss_pred EEEcCCCCCC
Confidence 9999887554
No 93
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=128.20 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=78.5
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
....++|||+|||.++++++|+++|+ .||.|..+.++.++.+++++|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTT-TSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567999999999999999999995 99999999889888899999999999999999999999999999999999999
Q ss_pred ecCCC
Q 017133 285 VATPK 289 (376)
Q Consensus 285 ~~~~~ 289 (376)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 99764
No 94
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-18 Score=128.78 Aligned_cols=85 Identities=24% Similarity=0.452 Sum_probs=79.1
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT-GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
..+.++|||+|||.++++++|+++|+ .|| |..|.+++++.+ ++++|||||+|.+.++|.+|| .|++..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTT-TSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHH-HCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 34668999999999999999999995 999 999999999887 899999999999999999999 99999999999999
Q ss_pred eecCCCCcC
Q 017133 284 DVATPKKAS 292 (376)
Q Consensus 284 ~~~~~~~~~ 292 (376)
.++.++...
T Consensus 89 ~~a~~~~~~ 97 (104)
T 1wi8_A 89 DVADQAQDK 97 (104)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999887554
No 95
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=2.7e-18 Score=124.59 Aligned_cols=80 Identities=20% Similarity=0.414 Sum_probs=76.6
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecC
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVAT 287 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~ 287 (376)
.++|||+|||.++++++|+++|+ .||.|..+.+..+..++.++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFH-GCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHG-GGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 46999999999999999999996 9999999999999889999999999999999999999 999999999999999998
Q ss_pred CC
Q 017133 288 PK 289 (376)
Q Consensus 288 ~~ 289 (376)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 74
No 96
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=4.6e-18 Score=123.83 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=76.5
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
....++|||+|||+++++++|+++|+ .| .|..|.++++ .+++++|+|||+|.+.++|.+||+ |||..|+|+.|+|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~-~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLA-PL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHT-TS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHh-hC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 34567999999999999999999996 99 8999999999 779999999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 017133 285 VATPKK 290 (376)
Q Consensus 285 ~~~~~~ 290 (376)
++.++.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 998764
No 97
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.3e-18 Score=125.81 Aligned_cols=87 Identities=20% Similarity=0.447 Sum_probs=78.9
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
......++|||+|||.++++++|+++|+ .||.|..|.+.++.. .++|||||+|.+.++|.+|++.||+..|+|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGG-GTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445678999999999999999999995 999999999998854 3899999999999999999999999999999999
Q ss_pred EeecCCCCcC
Q 017133 283 IDVATPKKAS 292 (376)
Q Consensus 283 v~~~~~~~~~ 292 (376)
|.|+.++...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cq3_A 87 VNNATARVMT 96 (103)
T ss_dssp EEECCSSCCC
T ss_pred EEEcccCCCC
Confidence 9999887554
No 98
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=3.8e-18 Score=123.21 Aligned_cols=80 Identities=26% Similarity=0.455 Sum_probs=74.6
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..+.++|||+|||.++++++|+++|+ .||.|..+.+++++.+++++|||||+|.+.++|.+|++ +++..|+|+.|+|+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFT-KFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 44668999999999999999999995 99999999999999899999999999999999999995 58889999999999
Q ss_pred ec
Q 017133 285 VA 286 (376)
Q Consensus 285 ~~ 286 (376)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 99
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=4.2e-18 Score=128.11 Aligned_cols=82 Identities=32% Similarity=0.470 Sum_probs=77.3
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
...+.++|||+|||..+++++|+++|+ .||.|..|.+..+. ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345678999999999999999999995 99999999999997 8999999999999999999999999999999999999
Q ss_pred eecC
Q 017133 284 DVAT 287 (376)
Q Consensus 284 ~~~~ 287 (376)
.|+.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 100
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=4.8e-18 Score=124.03 Aligned_cols=83 Identities=28% Similarity=0.442 Sum_probs=77.2
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
.+.++|||+|||.++++++|+++|+ .||.|..+.+.++ ++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFN-ECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHH-TTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567999999999999999999995 9999999999884 688999999999999999999999999999999999999
Q ss_pred cCCCCc
Q 017133 286 ATPKKA 291 (376)
Q Consensus 286 ~~~~~~ 291 (376)
+++...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 988654
No 101
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=129.44 Aligned_cols=81 Identities=19% Similarity=0.204 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
.+.++|||+|||+++++++|+++|++||.|.+|+|++|+.+++++|||||+|.+.++|.+|++.||+..+ .++.|++.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~--~gr~i~V~ 81 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV--MGNIIHAQ 81 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999999999 56777777
Q ss_pred ccc
Q 017133 193 WAT 195 (376)
Q Consensus 193 ~~~ 195 (376)
++.
T Consensus 82 ~a~ 84 (110)
T 3s8s_A 82 LDI 84 (110)
T ss_dssp ECS
T ss_pred ECC
Confidence 764
No 102
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=128.89 Aligned_cols=85 Identities=34% Similarity=0.588 Sum_probs=80.2
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
..++|||+|||.++++++|+++|+ .||.|..+.+.+++.++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFS-EVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHH-TTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHH-hcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 457999999999999999999996 9999999999999888999999999999999999999999999999999999999
Q ss_pred CCCCcC
Q 017133 287 TPKKAS 292 (376)
Q Consensus 287 ~~~~~~ 292 (376)
.++...
T Consensus 86 ~~~~~~ 91 (104)
T 1p1t_A 86 ASEKNK 91 (104)
T ss_dssp TCTTHH
T ss_pred CCccch
Confidence 887554
No 103
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7e-18 Score=125.93 Aligned_cols=86 Identities=24% Similarity=0.457 Sum_probs=78.1
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
.....++|||+|||.++++++|+++|+ .||.|..|.+.++.. .++|||||+|.+.++|.+|++.|++..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFS-QIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHH-HHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHH-hcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 345678999999999999999999995 999999999999854 36899999999999999999999999999999999
Q ss_pred eecCCCCcC
Q 017133 284 DVATPKKAS 292 (376)
Q Consensus 284 ~~~~~~~~~ 292 (376)
.|++++...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999886544
No 104
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.6e-18 Score=128.73 Aligned_cols=87 Identities=26% Similarity=0.399 Sum_probs=81.0
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
.....++|||+|||.++++++|+++|+ .||.|..|.+++++.++.++|||||+|.+.++|.+||+. ++..|.|+.|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFS-QYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHH-TTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 445678999999999999999999995 999999999999988999999999999999999999988 999999999999
Q ss_pred eecCCCCcC
Q 017133 284 DVATPKKAS 292 (376)
Q Consensus 284 ~~~~~~~~~ 292 (376)
.++.++...
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999887554
No 105
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=7.4e-18 Score=128.47 Aligned_cols=90 Identities=27% Similarity=0.540 Sum_probs=81.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCc
Q 017133 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (376)
Q Consensus 109 ~~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 188 (376)
.......++|||+|||+++++++|+++|..||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~ 86 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQ 86 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCEE
Confidence 34556789999999999999999999999999999999999988999999999999999999999999999988 5688
Q ss_pred ccccccccCCCC
Q 017133 189 FRLNWATFSGSD 200 (376)
Q Consensus 189 ~~~~~~~~~~~~ 200 (376)
|+|.++......
T Consensus 87 l~V~~a~~~~~~ 98 (115)
T 2dgo_A 87 IRTNWATRKPPA 98 (115)
T ss_dssp CEEEESSCCCCC
T ss_pred EEEEEccCCCCC
Confidence 899888765443
No 106
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.3e-18 Score=126.31 Aligned_cols=87 Identities=30% Similarity=0.519 Sum_probs=79.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 88 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL--YGKPIR 88 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC--SSCBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 456789999999999999999999999999999999999998999999999999999999999999999988 568888
Q ss_pred ccccccCCC
Q 017133 191 LNWATFSGS 199 (376)
Q Consensus 191 ~~~~~~~~~ 199 (376)
+.++.....
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 888875543
No 107
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.5e-18 Score=129.88 Aligned_cols=87 Identities=30% Similarity=0.481 Sum_probs=80.0
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
......++|||+|||.++++++|+++|+ .||.|..|+|++++.+++++|||||+|.+.++|.+||+.|++ .|.|+.|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFE-GFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHH-TTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 3445678999999999999999999995 999999999999988999999999999999999999999998 89999999
Q ss_pred EeecCCCCc
Q 017133 283 IDVATPKKA 291 (376)
Q Consensus 283 v~~~~~~~~ 291 (376)
|.|+..+..
T Consensus 90 V~~a~~~~~ 98 (116)
T 2cqd_A 90 VNLAYLGAK 98 (116)
T ss_dssp EEESTTTCC
T ss_pred EEEcccCCC
Confidence 999976543
No 108
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=1.2e-17 Score=129.14 Aligned_cols=87 Identities=28% Similarity=0.423 Sum_probs=80.6
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
.....+++|||+|||.++++++|+++|+ .||.|..|.+..+. +++++|||||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHH-TTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3455678999999999999999999996 99999999999997 899999999999999999999999999999999999
Q ss_pred EeecCCCCc
Q 017133 283 IDVATPKKA 291 (376)
Q Consensus 283 v~~~~~~~~ 291 (376)
|.|+.....
T Consensus 108 V~~a~~~~~ 116 (124)
T 2kt5_A 108 IQLVASQID 116 (124)
T ss_dssp EEEECCTTC
T ss_pred EEEeCCCCC
Confidence 999987644
No 109
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=9.5e-18 Score=127.69 Aligned_cols=86 Identities=27% Similarity=0.377 Sum_probs=79.0
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..+.++|||+|||.++++++|+++|+ .||.|.+|.+.+++ ++.++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFS-MAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34578999999999999999999995 99999999999997 58999999999999999999999999999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
|++.....
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99765443
No 110
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3e-18 Score=127.25 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=75.1
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
...++|||+|||+++|+++|+++|+ .||.|.+|.+.++.. +.++|||||+|.+.++|.+||. +++..++|+.|.|.+
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~-~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLE-DKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHH-TSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHh-hcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 3567999999999999999999996 999999999999977 9999999999999999999998 899999999999998
Q ss_pred cCC
Q 017133 286 ATP 288 (376)
Q Consensus 286 ~~~ 288 (376)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 865
No 111
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=2.8e-18 Score=120.25 Aligned_cols=74 Identities=8% Similarity=0.205 Sum_probs=69.1
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
.+..|||+||++.+|+++|+++|. .||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.||.|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~-q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCM-QHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHH-HHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHH-hhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 356899999999999999999996 999999999864 6899999999999999999999999999999999999
Q ss_pred C
Q 017133 287 T 287 (376)
Q Consensus 287 ~ 287 (376)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=6.1e-19 Score=128.19 Aligned_cols=83 Identities=22% Similarity=0.330 Sum_probs=74.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcC-CcCCCCCCccccc
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG-SLMPNTDQPFRLN 192 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~-~~~~~~~~~~~~~ 192 (376)
+.+|||+|||+++|+++|+++|+.|| .|.+|++++|+.+|.++|||||+|.+.++|.+|++.+++ ..+ .++.+++.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~--~gr~i~V~ 78 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI--LGQKVSMH 78 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE--TTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE--CCEEEEEE
Confidence 46899999999999999999999999 899999999999999999999999999999999987754 456 67889999
Q ss_pred ccccCCC
Q 017133 193 WATFSGS 199 (376)
Q Consensus 193 ~~~~~~~ 199 (376)
++.+...
T Consensus 79 ~a~~~~~ 85 (91)
T 2lxi_A 79 YSDPKPK 85 (91)
T ss_dssp CCCSCCC
T ss_pred EcCCCCC
Confidence 9875543
No 113
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=124.66 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=72.1
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--ecCcce
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY--CSSRPM 281 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~--~~g~~i 281 (376)
...++++|||+|||+++|+++|+++|+ .||.|.++.+++ .||+|||+|++.++|.+|++.|++.. +.|++|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~-~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQ-EFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHh-ccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 345678999999999999999999996 999999999874 36899999999999999999999875 789999
Q ss_pred EEeecCCCC
Q 017133 282 RIDVATPKK 290 (376)
Q Consensus 282 ~v~~~~~~~ 290 (376)
.|.|++.+.
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999998763
No 114
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=136.35 Aligned_cols=87 Identities=16% Similarity=0.355 Sum_probs=80.2
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeE--EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc----eec
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV----YCS 277 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~----~~~ 277 (376)
.....++|||+|||+++|+++|+++|+ .||.|.. |+|++|+.+++++|||||+|.+. +|.+|++.|||. .|.
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~-~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALA-PYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHG-GGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 345678999999999999999999995 9999977 99999998999999999999999 999999999999 999
Q ss_pred CcceEEeecCCCCcC
Q 017133 278 SRPMRIDVATPKKAS 292 (376)
Q Consensus 278 g~~i~v~~~~~~~~~ 292 (376)
|+.|+|.|++++...
T Consensus 97 gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 97 GKTINVEFAKGSKRD 111 (131)
T ss_dssp GCCCCCEECCCSCCC
T ss_pred CEEEEEEECCCCCCC
Confidence 999999999886544
No 115
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=1.7e-18 Score=127.30 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=75.7
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
..++|||+|||.++++++|+++|+ .||.|..+.++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTT-TSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 457999999999999999999995 9999999999999889999999999999999999999999999999999999998
Q ss_pred CC
Q 017133 287 TP 288 (376)
Q Consensus 287 ~~ 288 (376)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 116
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=4.2e-18 Score=128.25 Aligned_cols=87 Identities=29% Similarity=0.456 Sum_probs=76.8
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
.....++|||+|||.++++++|+++|+ .||.|..|.+.+++.++.++|||||+|.+.++|.+||+.+ +..|+|+.|+|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHT-TTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-ccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 445678999999999999999999995 9999999999999889999999999999999999999876 59999999999
Q ss_pred eecCCCCcC
Q 017133 284 DVATPKKAS 292 (376)
Q Consensus 284 ~~~~~~~~~ 292 (376)
.++.++...
T Consensus 99 ~~a~~~~~~ 107 (109)
T 2rs2_A 99 KVAFPRRAQ 107 (109)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999876543
No 117
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=7.8e-18 Score=135.67 Aligned_cols=88 Identities=24% Similarity=0.301 Sum_probs=81.6
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
...+.++|||+|||.++++++|+++|+ .||.|..|.|+.++.++.++|||||+|.+.++|.+||+.||+..|.|+.|+|
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFS-KSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344678999999999999999999995 9999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcC
Q 017133 284 DVATPKKAS 292 (376)
Q Consensus 284 ~~~~~~~~~ 292 (376)
.|+++....
T Consensus 114 ~~a~~~~~~ 122 (156)
T 1h2v_Z 114 DWDAGFKEG 122 (156)
T ss_dssp EEESCCCTT
T ss_pred EECCCCCCc
Confidence 999876543
No 118
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=6.5e-18 Score=129.44 Aligned_cols=83 Identities=24% Similarity=0.356 Sum_probs=76.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......++|||+|||+++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|++..+ .++.+
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 112 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV--GTKRL 112 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 4456789999999999999999999999999999999999988999999999999999999999999999988 56777
Q ss_pred ccccc
Q 017133 190 RLNWA 194 (376)
Q Consensus 190 ~~~~~ 194 (376)
++.++
T Consensus 113 ~V~~a 117 (118)
T 2khc_A 113 KVQLK 117 (118)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 77765
No 119
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.9e-18 Score=124.47 Aligned_cols=82 Identities=15% Similarity=0.198 Sum_probs=75.4
Q ss_pred CCCceEEECCCCCCCcHHHHH----HHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 017133 206 CSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~----~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i 281 (376)
...++|||+|||+++++++|+ ++|+ .||.|.+|++..++.+ +|||||+|.+.++|.+|++.|||..+.|+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~-~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFA-RHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhcc-ccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 355799999999999999999 9995 9999999999988664 8899999999999999999999999999999
Q ss_pred EEeecCCCCc
Q 017133 282 RIDVATPKKA 291 (376)
Q Consensus 282 ~v~~~~~~~~ 291 (376)
+|.++++...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999987643
No 120
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=1.6e-18 Score=121.37 Aligned_cols=75 Identities=25% Similarity=0.435 Sum_probs=71.7
Q ss_pred eEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
+|||+|||.++++++|+++|+ .||.|.++.+..++.++.++|||||+|.+.++|.+|++ |++..++|+.|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFE-QFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHH-TTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999996 99999999999998889999999999999999999997 9999999999999985
No 121
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=4.4e-18 Score=132.00 Aligned_cols=87 Identities=23% Similarity=0.432 Sum_probs=81.0
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
....++|||+|||.++++++|+++|+ .||.|..|.|+.+..++.++|||||+|.+.++|.+||+.|||..|.|+.|+|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFA-EYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567999999999999999999995 99999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
|+.++...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99876544
No 122
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=1.6e-17 Score=124.37 Aligned_cols=88 Identities=20% Similarity=0.343 Sum_probs=78.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCC-CCCcc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN-TDQPF 189 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~-~~~~~ 189 (376)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++ ++.++|||||+|.+.++|.+|++.|++..+.+ ..+.+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 44568999999999999999999999999999999999998 79999999999999999999999999998743 33889
Q ss_pred cccccccCCC
Q 017133 190 RLNWATFSGS 199 (376)
Q Consensus 190 ~~~~~~~~~~ 199 (376)
++.++.....
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9998875543
No 123
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.4e-19 Score=125.82 Aligned_cols=81 Identities=23% Similarity=0.432 Sum_probs=76.3
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
.++++|||+|||.++++++|+++|+ .||.|..+.+..++.++.++|||||+|.+.++|.+|++.|||..+.|+.|++.+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQ-PYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTST-TTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 3567999999999999999999995 999999999999988999999999999999999999999999999999999887
Q ss_pred cC
Q 017133 286 AT 287 (376)
Q Consensus 286 ~~ 287 (376)
..
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 124
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1.6e-18 Score=128.57 Aligned_cols=84 Identities=26% Similarity=0.474 Sum_probs=75.1
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecC-CCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDS-NTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
.....++|||+|||.++++++|+++|+ .|| |.+|.+.+++ .+++++|||||+|.+.++|.+|| .|+|..|+|+.|+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSC-SSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHH-hcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 345668999999999999999999995 999 9999999997 58999999999999999999999 8999999999999
Q ss_pred EeecCCCC
Q 017133 283 IDVATPKK 290 (376)
Q Consensus 283 v~~~~~~~ 290 (376)
|.+++++.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998753
No 125
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.1e-18 Score=126.23 Aligned_cols=87 Identities=28% Similarity=0.414 Sum_probs=79.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 87 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY--DHLIL 87 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee--CCcEE
Confidence 3456789999999999999999999999999999999999998999999999999999999999999999998 56888
Q ss_pred cccccccCC
Q 017133 190 RLNWATFSG 198 (376)
Q Consensus 190 ~~~~~~~~~ 198 (376)
++.++....
T Consensus 88 ~v~~a~~~~ 96 (103)
T 2cq0_A 88 NVEWAKPST 96 (103)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 888887544
No 126
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=126.14 Aligned_cols=85 Identities=20% Similarity=0.425 Sum_probs=76.7
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
...+.++|||+|||.++++++|+++|+ .||.|..|.+..+ +.++|||||+|.+.++|.+||+.||+..|.|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFY-KYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 344678999999999999999999995 9999999998654 568999999999999999999999999999999999
Q ss_pred eecCCCCcC
Q 017133 284 DVATPKKAS 292 (376)
Q Consensus 284 ~~~~~~~~~ 292 (376)
.|++++...
T Consensus 94 ~~a~~~~~~ 102 (109)
T 1x4a_A 94 EFPRSGRGT 102 (109)
T ss_dssp ECCCCCCCC
T ss_pred EEcccCCCC
Confidence 999887544
No 127
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-17 Score=123.90 Aligned_cols=87 Identities=25% Similarity=0.347 Sum_probs=79.3
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
....+.++|||+|||.++++++|+++|+ .||.|..|.+++++.++.++|||||+|.+.++|.+||+ ++..|+|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFS-TFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHH-hcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3445678999999999999999999995 99999999999998899999999999999999999998 57899999999
Q ss_pred EeecCCCCcC
Q 017133 283 IDVATPKKAS 292 (376)
Q Consensus 283 v~~~~~~~~~ 292 (376)
|.|+.++...
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cqg_A 87 CKLPNSKQSQ 96 (103)
T ss_dssp EECCCTTCCC
T ss_pred EEecCCCCcC
Confidence 9999887554
No 128
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.8e-17 Score=126.12 Aligned_cols=83 Identities=17% Similarity=0.451 Sum_probs=77.1
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee--------
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC-------- 276 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~-------- 276 (376)
....++|||+|||.++++++|+++|+ .||.|..|++.++. ++.++|||||+|.+.++|.+|++.|||..|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLK-PFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTT-TTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 44568999999999999999999995 99999999999997 899999999999999999999999999999
Q ss_pred cCcceEEeecCCC
Q 017133 277 SSRPMRIDVATPK 289 (376)
Q Consensus 277 ~g~~i~v~~~~~~ 289 (376)
.+++|.|.|++++
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5788999999865
No 129
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.6e-18 Score=124.10 Aligned_cols=84 Identities=20% Similarity=0.315 Sum_probs=77.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 87 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRI 87 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE--TTEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3556789999999999999999999999999999999999998999999999999999999999999999988 56788
Q ss_pred cccccc
Q 017133 190 RLNWAT 195 (376)
Q Consensus 190 ~~~~~~ 195 (376)
++.++.
T Consensus 88 ~v~~a~ 93 (95)
T 2cqc_A 88 RVSGPS 93 (95)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 888765
No 130
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.2e-18 Score=124.00 Aligned_cols=82 Identities=21% Similarity=0.380 Sum_probs=75.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 89 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL--FGRVIK 89 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE--TTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee--CCcEEE
Confidence 446789999999999999999999999999999999999998999999999999999999999999999988 567787
Q ss_pred cccc
Q 017133 191 LNWA 194 (376)
Q Consensus 191 ~~~~ 194 (376)
+.++
T Consensus 90 v~~a 93 (94)
T 2e5h_A 90 ASIA 93 (94)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7765
No 131
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.2e-18 Score=127.78 Aligned_cols=85 Identities=20% Similarity=0.452 Sum_probs=77.6
Q ss_pred ccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 017133 202 RTEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (376)
Q Consensus 202 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i 281 (376)
.......++|||+|||.++++++|+++|+ .||.|..|.+.++. +.++|||||+|.+.++|.+|++.|+|..++|+.|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGG-GTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHH-hcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455678999999999999999999995 99999999999885 3589999999999999999999999999999999
Q ss_pred EEeecCCC
Q 017133 282 RIDVATPK 289 (376)
Q Consensus 282 ~v~~~~~~ 289 (376)
+|.+++++
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999875
No 132
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.7e-18 Score=126.93 Aligned_cols=81 Identities=15% Similarity=0.200 Sum_probs=73.1
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceecCcceE
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPMR 282 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~i~ 282 (376)
..++++|||+|||+++++++|+++|+ .||.|.+|.++++ +|||||+|++.++|.+|++.|++ ..|.|+.|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~-~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGL-PFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHT-TTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 44678999999999999999999995 9999999999865 68999999999999999999884 679999999
Q ss_pred EeecCCCCcC
Q 017133 283 IDVATPKKAS 292 (376)
Q Consensus 283 v~~~~~~~~~ 292 (376)
|.|++.+...
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999887554
No 133
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=123.70 Aligned_cols=87 Identities=25% Similarity=0.455 Sum_probs=79.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
...+.++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV--DGRQIR 85 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT--TSCCCE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 345789999999999999999999999999999999999998999999999999999999999999999998 568888
Q ss_pred ccccccCCC
Q 017133 191 LNWATFSGS 199 (376)
Q Consensus 191 ~~~~~~~~~ 199 (376)
+.++.....
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 888875543
No 134
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=1.6e-17 Score=124.73 Aligned_cols=89 Identities=20% Similarity=0.423 Sum_probs=80.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCc-CCCCCCcc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQPF 189 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~-~~~~~~~~ 189 (376)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++.. +.+.++.+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 45678999999999999999999999999999999999999899999999999999999999999999976 55577899
Q ss_pred cccccccCCC
Q 017133 190 RLNWATFSGS 199 (376)
Q Consensus 190 ~~~~~~~~~~ 199 (376)
++.++.....
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9998875443
No 135
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=1.6e-17 Score=126.58 Aligned_cols=87 Identities=24% Similarity=0.326 Sum_probs=79.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 98 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI--GMKRLK 98 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999998 578889
Q ss_pred ccccccCCC
Q 017133 191 LNWATFSGS 199 (376)
Q Consensus 191 ~~~~~~~~~ 199 (376)
|.++.....
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 988875543
No 136
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=121.69 Aligned_cols=84 Identities=25% Similarity=0.538 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~ 80 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL--AGRPMRVG 80 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS--SSSCCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 4688999999999999999999999999999999999998999999999999999999999999999998 56888888
Q ss_pred ccccCC
Q 017133 193 WATFSG 198 (376)
Q Consensus 193 ~~~~~~ 198 (376)
++....
T Consensus 81 ~a~~~~ 86 (95)
T 2dnz_A 81 HVTERL 86 (95)
T ss_dssp ESSCCC
T ss_pred Eccccc
Confidence 886543
No 137
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.1e-18 Score=129.12 Aligned_cols=85 Identities=22% Similarity=0.382 Sum_probs=79.4
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
...++|||+|||.++++++|+++|+ .||.|..|.++.++.++.++|||||+|.+.++|.+||+. ++..|+|+.|+|.+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYE-QWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHT-SSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 3457999999999999999999995 999999999999988999999999999999999999987 99999999999999
Q ss_pred cCCCCcC
Q 017133 286 ATPKKAS 292 (376)
Q Consensus 286 ~~~~~~~ 292 (376)
+.++...
T Consensus 103 a~~~~~~ 109 (116)
T 1x4b_A 103 AVAREES 109 (116)
T ss_dssp CSSCCCC
T ss_pred CCCCccC
Confidence 9887554
No 138
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=124.34 Aligned_cols=87 Identities=21% Similarity=0.415 Sum_probs=79.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeec-CCCCCccceEEEEecCHHHHHHHHHHh-cCCcCCCCCC
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRN-KQTGQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTDQ 187 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~-~~~g~~~g~afV~f~~~~~a~~a~~~l-~~~~~~~~~~ 187 (376)
......++|||+|||+++++++|+++|..||.|.+|+++.+ +.++.++|||||+|.+.++|.+|++.| ++..+ .++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--~g~ 87 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL--YGR 87 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS--SSC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE--CCC
Confidence 35567899999999999999999999999999999999999 788999999999999999999999999 89988 567
Q ss_pred cccccccccCC
Q 017133 188 PFRLNWATFSG 198 (376)
Q Consensus 188 ~~~~~~~~~~~ 198 (376)
.|++.++....
T Consensus 88 ~l~v~~a~~~~ 98 (107)
T 2cph_A 88 RLVLEWADSEV 98 (107)
T ss_dssp BCEEEECCCCC
T ss_pred EEEEEeCCCCC
Confidence 88888887543
No 139
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.4e-18 Score=127.46 Aligned_cols=85 Identities=18% Similarity=0.282 Sum_probs=77.3
Q ss_pred CCCceEEECCCCCCCcHHHHH---HHHhhhCCCeeEEEEEecCCCC---CcceEEEEEeCCHHHHHHHHHHhCCceecCc
Q 017133 206 CSDLSIFVGDLAPDVTDSILQ---ETFSSKYPSVKGAKVIIDSNTG---RTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~---~~F~~~~g~i~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~ 279 (376)
...++|||+|||+++++++|+ ++|+ .||.|.+|.+.++..++ +++|||||+|.+.++|.+||+.|||..|+|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~-~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFG-KFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTT-TTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhh-ccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 346799999999999999999 9995 99999999999887644 5669999999999999999999999999999
Q ss_pred ceEEeecCCCCc
Q 017133 280 PMRIDVATPKKA 291 (376)
Q Consensus 280 ~i~v~~~~~~~~ 291 (376)
.|+|.|+.++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999988753
No 140
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=122.63 Aligned_cols=82 Identities=17% Similarity=0.397 Sum_probs=76.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceE--------EEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcC
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--------VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~ 182 (376)
.....++|||+|||+++++++|+++|+.||.|.+ ++++.++.+|+++|||||+|.+.++|.+|++.|++..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4567899999999999999999999999999999 99999998999999999999999999999999999988
Q ss_pred CCCCCccccccc
Q 017133 183 PNTDQPFRLNWA 194 (376)
Q Consensus 183 ~~~~~~~~~~~~ 194 (376)
.++.+++.++
T Consensus 89 --~g~~l~V~~A 98 (99)
T 2la6_A 89 --SGNPIKVSFA 98 (99)
T ss_dssp --SSSBCEEEEC
T ss_pred --CCcEEEEEec
Confidence 5677887765
No 141
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-17 Score=129.96 Aligned_cols=83 Identities=25% Similarity=0.505 Sum_probs=77.6
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
....+.++|||+|||.++++++|+++|+ .||.|..+++.+++.+++++|||||+|.+.++|.+|++.|||..|+|+.|+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFI-PFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHG-GGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHH-hcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4455678999999999999999999995 999999999999988999999999999999999999999999999999999
Q ss_pred Eeec
Q 017133 283 IDVA 286 (376)
Q Consensus 283 v~~~ 286 (376)
|.|+
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9985
No 142
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=122.52 Aligned_cols=83 Identities=12% Similarity=0.164 Sum_probs=73.3
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh--CCceecCcc
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM--NGVYCSSRP 280 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l--~g~~~~g~~ 280 (376)
....++++|||+|||+++++++|+++|+ .||.|.+|.++++ +|||||+|++.++|.+|++.| ++..+.|+.
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~-~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGL-PFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTT-TTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 3445678999999999999999999995 9999999988754 689999999999999999977 467899999
Q ss_pred eEEeecCCCCcC
Q 017133 281 MRIDVATPKKAS 292 (376)
Q Consensus 281 i~v~~~~~~~~~ 292 (376)
|+|.|++.+...
T Consensus 83 l~V~~a~~~~~~ 94 (101)
T 2cq1_A 83 IYIQYSNHKELK 94 (101)
T ss_dssp CEEEECSCSSCC
T ss_pred EEEEEcCcccCc
Confidence 999999876554
No 143
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=6.6e-18 Score=125.56 Aligned_cols=95 Identities=24% Similarity=0.331 Sum_probs=80.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccccc
Q 017133 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (376)
Q Consensus 116 ~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~ 195 (376)
++|||+|||+++++++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|.+|++.|++..+ .++.+++.++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVI--CGSRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCS--SSCCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeE--CCcEEEEEEcc
Confidence 58999999999999999999999999999999887 678999999999999999999999988 56778888877
Q ss_pred cCCCCCcc-----CCCCCceEEECCCC
Q 017133 196 FSGSDRRT-----EACSDLSIFVGDLA 217 (376)
Q Consensus 196 ~~~~~~~~-----~~~~~~~l~v~nlp 217 (376)
........ ......+|||+||+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 74 GMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCCCcccCCCCCccccCCCceecCCCC
Confidence 65433222 22235689999996
No 144
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=124.42 Aligned_cols=86 Identities=22% Similarity=0.348 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 86 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL--DGRELR 86 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB--TTBCCE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 456789999999999999999999999999999999999998999999999999999999999999999998 567888
Q ss_pred ccccccCC
Q 017133 191 LNWATFSG 198 (376)
Q Consensus 191 ~~~~~~~~ 198 (376)
+.++....
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 88887543
No 145
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=7.8e-18 Score=121.56 Aligned_cols=82 Identities=29% Similarity=0.608 Sum_probs=75.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
.+.++|||+|||+++++++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v~ 81 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL--GGRQIRTN 81 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEEEEE
Confidence 4678999999999999999999999999999999999988999999999999999999999999999988 56788888
Q ss_pred cccc
Q 017133 193 WATF 196 (376)
Q Consensus 193 ~~~~ 196 (376)
++..
T Consensus 82 ~a~~ 85 (87)
T 3bs9_A 82 WATR 85 (87)
T ss_dssp EEC-
T ss_pred ecCC
Confidence 8764
No 146
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.7e-17 Score=121.73 Aligned_cols=86 Identities=20% Similarity=0.362 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|..||.|.+|+++.++.+++++|||||+|.+.++|.+|++ +++..+ .++.++
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~l~ 82 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI--MGKKVE 82 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS--SSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE--CCeEEE
Confidence 34678999999999999999999999999999999999999899999999999999999999998 999988 567888
Q ss_pred ccccccCCC
Q 017133 191 LNWATFSGS 199 (376)
Q Consensus 191 ~~~~~~~~~ 199 (376)
+.++.....
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 888875443
No 147
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=122.70 Aligned_cols=84 Identities=17% Similarity=0.342 Sum_probs=77.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|..||.|.+|+++.++ +|+++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 89 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTI--KENIIK 89 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEES--SSCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 44568899999999999999999999999999999999998 899999999999999999999999999988 567888
Q ss_pred ccccccC
Q 017133 191 LNWATFS 197 (376)
Q Consensus 191 ~~~~~~~ 197 (376)
+.++...
T Consensus 90 v~~a~~~ 96 (100)
T 2do4_A 90 VAISNSG 96 (100)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 8887644
No 148
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=1e-18 Score=163.19 Aligned_cols=87 Identities=22% Similarity=0.436 Sum_probs=81.1
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..+.++|||+|||+.+|+++|.++|+ .||.|..|.|+.+..++.++|||||+|.+.++|.+||..|||..|.|+.|.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~-~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFE-VYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567999999999999999999996 99999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
|+..+...
T Consensus 178 ~a~~~~~~ 185 (437)
T 3pgw_S 178 VERGRTVK 185 (437)
T ss_pred EeCCCCCC
Confidence 99876543
No 149
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=4.2e-18 Score=123.68 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=70.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcC--CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 116 KTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 116 ~~v~v~nLp~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
.+|||+|||+++++++|+++|+.|| .|.+++++.++.+|+++|||||+|.+.++|.+|++.|++..+ .++.+++.+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~--~gr~i~V~~ 79 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVVTP 79 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS--SSCCCEECC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee--CCEEEEEEE
Confidence 5799999999999999999999999 999999999999999999999999999999999999999998 567788877
Q ss_pred cccC
Q 017133 194 ATFS 197 (376)
Q Consensus 194 ~~~~ 197 (376)
+...
T Consensus 80 ~~~~ 83 (90)
T 3p5t_L 80 SNKL 83 (90)
T ss_dssp C---
T ss_pred CCCC
Confidence 7644
No 150
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8e-18 Score=127.00 Aligned_cols=85 Identities=15% Similarity=0.282 Sum_probs=78.2
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCC-eeEEEEE-ecCCCCCcceEEEEEeCCHHHHHHHHHHhC--CceecCcceE
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVI-IDSNTGRTKGYGFVRFGDENERSRAMTEMN--GVYCSSRPMR 282 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~-i~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~Al~~l~--g~~~~g~~i~ 282 (376)
+.++|||+|||.++++++|+++|+ .||. |..+.++ .+..++.++|||||+|.+.++|.+|++.|+ +..+.|+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~-~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIA-KVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHH-HHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHH-HhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 567999999999999999999995 9998 9999998 788888999999999999999999999996 5899999999
Q ss_pred EeecCCCCcC
Q 017133 283 IDVATPKKAS 292 (376)
Q Consensus 283 v~~~~~~~~~ 292 (376)
|.|++++...
T Consensus 86 V~~a~~~~~~ 95 (109)
T 2dis_A 86 VDWAEPEIDV 95 (109)
T ss_dssp EEESCSSCST
T ss_pred EEEcCCCCCc
Confidence 9999887543
No 151
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.1e-18 Score=120.61 Aligned_cols=76 Identities=29% Similarity=0.465 Sum_probs=72.8
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
++|||+|||.++++++|+++|+ .||.|..+.+.+++.+++++|+|||+|.+.++|.+|++.++ ..++|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFG-QFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHT-TTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999995 99999999999998889999999999999999999999999 9999999999987
No 152
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.3e-18 Score=128.62 Aligned_cols=82 Identities=23% Similarity=0.396 Sum_probs=77.5
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
..++|||+|||.++++++|+++|+ .||.|..|.++.++.++.++|||||+|.+.++|.+|| .|||..|.|+.|+|.|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFS-AVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 457999999999999999999995 9999999999999988999999999999999999999 99999999999999999
Q ss_pred CCCC
Q 017133 287 TPKK 290 (376)
Q Consensus 287 ~~~~ 290 (376)
.++.
T Consensus 102 ~~~~ 105 (114)
T 2cq4_A 102 QAEK 105 (114)
T ss_dssp HHHH
T ss_pred CCCc
Confidence 7653
No 153
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-17 Score=122.56 Aligned_cols=87 Identities=25% Similarity=0.450 Sum_probs=78.5
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCc
Q 017133 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (376)
Q Consensus 109 ~~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 188 (376)
.......++|||+|||+++++++|+++|+.||.|.+|+++.+ ++.++|||||+|.+.++|.+|++.|++..+ .++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 84 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATKP 84 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBS--SSSB
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEe--CCcE
Confidence 345567899999999999999999999999999999999998 799999999999999999999999999998 6688
Q ss_pred ccccccccCCC
Q 017133 189 FRLNWATFSGS 199 (376)
Q Consensus 189 ~~~~~~~~~~~ 199 (376)
+++.++.....
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2d9p_A 85 LYVALAQRKEE 95 (103)
T ss_dssp CEEEECSSCCC
T ss_pred EEEEEeccccc
Confidence 88888875443
No 154
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=122.38 Aligned_cols=87 Identities=43% Similarity=0.794 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCce-EEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCc-
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV-NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP- 188 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~-~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~- 188 (376)
.....++|||+|||+++++++|+++|+.||.|. +|++++++.++.++|||||+|.+.++|.+|++.|++..+.+....
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345789999999999999999999999999999 999999999999999999999999999999999999998554422
Q ss_pred -ccccccccC
Q 017133 189 -FRLNWATFS 197 (376)
Q Consensus 189 -~~~~~~~~~ 197 (376)
+++.|+...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 888887644
No 155
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=1.8e-17 Score=128.50 Aligned_cols=84 Identities=20% Similarity=0.345 Sum_probs=77.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
...+.++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i--~g~~l~ 119 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL--DGRRIR 119 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 456789999999999999999999999999999999999998999999999999999999999999999988 567888
Q ss_pred cccccc
Q 017133 191 LNWATF 196 (376)
Q Consensus 191 ~~~~~~ 196 (376)
+.++..
T Consensus 120 V~~a~~ 125 (129)
T 2kxn_B 120 VDFSIT 125 (129)
T ss_dssp ESCCSS
T ss_pred EEEecC
Confidence 888764
No 156
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=3e-18 Score=124.98 Aligned_cols=84 Identities=21% Similarity=0.326 Sum_probs=74.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCC--ceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCc--CCCCCC
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ--VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL--MPNTDQ 187 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~--v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~--~~~~~~ 187 (376)
...-.+|||+|||+++|+++|+++|++||. +.+|++++|+.+|+++|||||+|.+.++|.+|++.|++.. +...++
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 356789999999999999999999999994 7799999999999999999999999999999999999974 223678
Q ss_pred cccccccc
Q 017133 188 PFRLNWAT 195 (376)
Q Consensus 188 ~~~~~~~~ 195 (376)
.|+++|+.
T Consensus 86 ~i~V~~Ak 93 (95)
T 2lkz_A 86 TIGVDFAK 93 (95)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 88888875
No 157
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=1.4e-18 Score=126.34 Aligned_cols=81 Identities=33% Similarity=0.580 Sum_probs=73.8
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 288 (376)
++|||+|||.++++++|+++|+ .||.|.++.+.+++.++.++|||||+|.+.+ |.+|++.|||..++|+.|+|.++.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFS-QFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHH-HHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHH-hcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 5899999999999999999996 9999999999999989999999999999999 9999999999999999999999987
Q ss_pred CCc
Q 017133 289 KKA 291 (376)
Q Consensus 289 ~~~ 291 (376)
+..
T Consensus 80 ~~~ 82 (90)
T 2ki2_A 80 KKS 82 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 643
No 158
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=124.43 Aligned_cols=86 Identities=26% Similarity=0.388 Sum_probs=78.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhc------CCcCCC
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS------GSLMPN 184 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~------~~~~~~ 184 (376)
.....++|||+|||+++++++|+++|..||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|+ +..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~-- 88 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL-- 88 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES--
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE--
Confidence 44678899999999999999999999999999999999999899999999999999999999999999 8888
Q ss_pred CCCcccccccccCC
Q 017133 185 TDQPFRLNWATFSG 198 (376)
Q Consensus 185 ~~~~~~~~~~~~~~ 198 (376)
.++.+++.++....
T Consensus 89 ~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 89 DGRQLKVDLAVTRD 102 (111)
T ss_dssp SSCEEEEECCCCCC
T ss_pred cCEEEEEEECCCCc
Confidence 66888888887543
No 159
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=123.19 Aligned_cols=82 Identities=17% Similarity=0.231 Sum_probs=72.2
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eecCcce
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV--YCSSRPM 281 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~--~~~g~~i 281 (376)
...++++|||+|||+++++++|+++|+ .||.|.+|.++++ +|||||+|++.++|.+|++.|++. .+.|+.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~-~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALE-KFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHT-TTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 345678999999999999999999995 9999999988753 689999999999999999988764 4899999
Q ss_pred EEeecCCCCcC
Q 017133 282 RIDVATPKKAS 292 (376)
Q Consensus 282 ~v~~~~~~~~~ 292 (376)
+|.|++.+...
T Consensus 84 ~V~~a~~~~~~ 94 (104)
T 1wex_A 84 FFNYSTSKRIT 94 (104)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCcccc
Confidence 99999876543
No 160
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-17 Score=122.28 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=79.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
..+.++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 82 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF--QGRMLHV 82 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES--SSCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 35689999999999999999999999999999999999998999999999999999999999999999988 5788888
Q ss_pred cccccCCC
Q 017133 192 NWATFSGS 199 (376)
Q Consensus 192 ~~~~~~~~ 199 (376)
.++.....
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 88876543
No 161
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.4e-18 Score=124.54 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=74.7
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
....++|||+|||+++|++||+++|+ .|| +.+|.|++++ +++++|||||+|.+.++|.+|| .+|+..|++|.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFS-PLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSC-SCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 34567999999999999999999995 999 5599999997 7999999999999999999999 579999999999999
Q ss_pred ecCCCC
Q 017133 285 VATPKK 290 (376)
Q Consensus 285 ~~~~~~ 290 (376)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 987754
No 162
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=1.5e-17 Score=128.59 Aligned_cols=83 Identities=22% Similarity=0.417 Sum_probs=78.0
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
..++|||+|||.++++++|+++|+ .||.|.+|.+.+++.++.++|||||+|.+.++|.+|+ .|+|..|+|+.|+|.|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFS-SCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHH-TTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 457999999999999999999996 9999999999999889999999999999999999999 89999999999999999
Q ss_pred CCCCc
Q 017133 287 TPKKA 291 (376)
Q Consensus 287 ~~~~~ 291 (376)
+....
T Consensus 113 ~~~~~ 117 (124)
T 2jwn_A 113 RTNMP 117 (124)
T ss_dssp SCCCS
T ss_pred CCCCC
Confidence 86543
No 163
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=1.2e-17 Score=120.04 Aligned_cols=81 Identities=22% Similarity=0.445 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
..+.++|||+|||+++++++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.+++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 81 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIRV 81 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 35789999999999999999999999999999999999988999999999999999999999999999998 5677887
Q ss_pred ccc
Q 017133 192 NWA 194 (376)
Q Consensus 192 ~~~ 194 (376)
.++
T Consensus 82 ~~a 84 (85)
T 3mdf_A 82 NLA 84 (85)
T ss_dssp EEC
T ss_pred EEc
Confidence 775
No 164
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=5.7e-18 Score=124.73 Aligned_cols=80 Identities=9% Similarity=0.159 Sum_probs=71.5
Q ss_pred CCCCceEEECCCCC-CCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCc--eecCcce
Q 017133 205 ACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGV--YCSSRPM 281 (376)
Q Consensus 205 ~~~~~~l~v~nlp~-~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~--~~~g~~i 281 (376)
..++++|||+|||+ +++++||+++|+ .||.|.+|.|+++ +|+|||+|++.++|.+|++.|++. .|.|+.|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~-~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVE-PFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTG-GGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHH-hcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 34678999999999 999999999995 9999999999865 479999999999999999999864 5999999
Q ss_pred EEeecCCCCc
Q 017133 282 RIDVATPKKA 291 (376)
Q Consensus 282 ~v~~~~~~~~ 291 (376)
+|.|+..+..
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 1x4d_A 85 RVHLSQKYKR 94 (102)
T ss_dssp EEEEECCCTT
T ss_pred EEEECCCCCC
Confidence 9999986543
No 165
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=125.16 Aligned_cols=84 Identities=19% Similarity=0.328 Sum_probs=75.9
Q ss_pred CCCCceEEECCCCCCC------cHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 017133 205 ACSDLSIFVGDLAPDV------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~------t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 278 (376)
...+++|||+|||..+ ++++|+++|+ .||.|..|.+. +.+|+++|||||+|.+.++|.+|++.|||..|.|
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHG-GGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHh-cCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 3446799999999999 7899999996 99999999988 3578999999999999999999999999999999
Q ss_pred c-ceEEeecCCCCc
Q 017133 279 R-PMRIDVATPKKA 291 (376)
Q Consensus 279 ~-~i~v~~~~~~~~ 291 (376)
+ .|+|.++.....
T Consensus 89 ~~~l~V~~a~~~~k 102 (105)
T 2nlw_A 89 QHTFRVNLFTDFDK 102 (105)
T ss_dssp TCEEEEECSCCCCC
T ss_pred CceEEEEEcchHhh
Confidence 8 999999986543
No 166
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=3.1e-17 Score=123.23 Aligned_cols=85 Identities=24% Similarity=0.513 Sum_probs=78.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......++|||+|||+++++++|+++|+.||.|.+|+++.++.+|+++|||||+|.+.++|.+|++.|++..+ .++.+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l 98 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL--AGRPM 98 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS--SSSCC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 3456789999999999999999999999999999999999998999999999999999999999999999988 56788
Q ss_pred ccccccc
Q 017133 190 RLNWATF 196 (376)
Q Consensus 190 ~~~~~~~ 196 (376)
++.++..
T Consensus 99 ~V~~a~~ 105 (108)
T 2jrs_A 99 KVGHVTE 105 (108)
T ss_dssp EEECSCS
T ss_pred EEEEccc
Confidence 8888764
No 167
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=124.30 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=75.8
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeE-EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG-AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
....++|||+|||++++++||+++|+ .||.|.. |.|.++ .+++++|||||+|.+.++|.+||+. ++..|+||.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFS-GLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTT-TCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEE
Confidence 34567999999999999999999995 9999987 888888 7899999999999999999999987 999999999999
Q ss_pred eecCCCC
Q 017133 284 DVATPKK 290 (376)
Q Consensus 284 ~~~~~~~ 290 (376)
.++..+.
T Consensus 89 ~~~~~~~ 95 (104)
T 1wg5_A 89 FKSSRAE 95 (104)
T ss_dssp EEECTTT
T ss_pred EECCHHH
Confidence 9997654
No 168
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.73 E-value=1.7e-17 Score=118.63 Aligned_cols=80 Identities=35% Similarity=0.613 Sum_probs=75.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccccc
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 194 (376)
+++|||+|||+++++++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.+++.++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v~~a 78 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL--NGRPLRINWA 78 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE--TTEECEEEEC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee--CCcEEEEEec
Confidence 46899999999999999999999999999999999988999999999999999999999999999998 5788888887
Q ss_pred cc
Q 017133 195 TF 196 (376)
Q Consensus 195 ~~ 196 (376)
..
T Consensus 79 ~~ 80 (83)
T 3md1_A 79 AK 80 (83)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 169
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=8.9e-18 Score=128.03 Aligned_cols=106 Identities=12% Similarity=0.184 Sum_probs=91.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
++...++|||+|||+++++++|+++|+.||.|.+|.++.+ +.++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 78 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNV--SNRYLV 78 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBS--SSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 3456789999999999999999999999999999999875 45689999999999999999999999998 567888
Q ss_pred ccccccCCCCCccCCCCCceEEECCCCCCCcHHHHHHHHhhhCCC
Q 017133 191 LNWATFSGSDRRTEACSDLSIFVGDLAPDVTDSILQETFSSKYPS 235 (376)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~ 235 (376)
+.++...... .+++...++++|.++|+ .||.
T Consensus 79 v~~a~~~~~~-------------~~~~~~~~~~~l~~~~~-~~g~ 109 (115)
T 3lqv_A 79 VLYYNANRAF-------------QKMDTKKKEEQLKLLKE-KYGI 109 (115)
T ss_dssp EEECCHHHHT-------------TTSCHHHHHHHHHHHHH-HHCC
T ss_pred EEEecCChhh-------------hhhhHhHhHHHHHHHHH-HhCC
Confidence 8887633211 57788889999999995 8884
No 170
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.3e-17 Score=125.03 Aligned_cols=87 Identities=28% Similarity=0.447 Sum_probs=78.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCc
Q 017133 109 NFTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (376)
Q Consensus 109 ~~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 188 (376)
.......++|||+|||+++++++|+++|..||.|.+|++++++.+++++|||||+|.+.++|.+|++.+++ .+ .++.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~--~g~~ 87 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II--DGRK 87 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE--TTEE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC--CCEE
Confidence 34556789999999999999999999999999999999999998999999999999999999999999998 66 6688
Q ss_pred ccccccccCC
Q 017133 189 FRLNWATFSG 198 (376)
Q Consensus 189 ~~~~~~~~~~ 198 (376)
|+|.++....
T Consensus 88 l~V~~a~~~~ 97 (116)
T 2cqd_A 88 ANVNLAYLGA 97 (116)
T ss_dssp CEEEESTTTC
T ss_pred EEEEEcccCC
Confidence 8888886543
No 171
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.8e-17 Score=122.39 Aligned_cols=86 Identities=29% Similarity=0.502 Sum_probs=77.4
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
....+.++|||+|||.++++++|+++|+ .| ..+.++.+..++.++|||||+|.+.++|.+||+.||+..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFD-GS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTST-TC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhc-CC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3445678999999999999999999995 66 3678888888899999999999999999999999999999999999
Q ss_pred EeecCCCCcC
Q 017133 283 IDVATPKKAS 292 (376)
Q Consensus 283 v~~~~~~~~~ 292 (376)
|.|++++...
T Consensus 86 V~~a~~~~~~ 95 (102)
T 2fc8_A 86 LDWAKPKGEG 95 (102)
T ss_dssp EEECCCCCSS
T ss_pred EEEecCCCCC
Confidence 9999987654
No 172
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.73 E-value=8.8e-18 Score=130.81 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=76.1
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCC---eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~---i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i 281 (376)
....++|||+|||+++|++||+++|+ .||. |.+|+|++++. ++++|||||+|.+.++|.+||+ ||+..|+||.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~-~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLS-DCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTT-TCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34567999999999999999999995 9999 89999999977 9999999999999999999998 99999999999
Q ss_pred EEeecCCC
Q 017133 282 RIDVATPK 289 (376)
Q Consensus 282 ~v~~~~~~ 289 (376)
+|.++..+
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99998654
No 173
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=121.36 Aligned_cols=81 Identities=17% Similarity=0.275 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcC--CcCCCCCCcc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG--SLMPNTDQPF 189 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~--~~~~~~~~~~ 189 (376)
+...++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|..|++.|++ ..+ .+++|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l--~Gr~l 84 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVL--RGQPI 84 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEE--TTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceE--CCEEE
Confidence 456899999999999999999999999999999999876 58999999999999999998875 445 67899
Q ss_pred cccccccCCCC
Q 017133 190 RLNWATFSGSD 200 (376)
Q Consensus 190 ~~~~~~~~~~~ 200 (376)
+|.++......
T Consensus 85 ~V~~A~~~~~~ 95 (105)
T 1sjq_A 85 YIQFSNHKELK 95 (105)
T ss_dssp CBCCCSSSSCC
T ss_pred EEEEcCCCCCC
Confidence 99998755443
No 174
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=124.02 Aligned_cols=87 Identities=28% Similarity=0.407 Sum_probs=78.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......++|||+|||+++++++|+++|..||.|.+|+++.++.++.++|||||+|.+.++|.+|++. ++..+ .++.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~--~g~~l 87 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL--DGRNI 87 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE--TTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE--CCEEE
Confidence 3556789999999999999999999999999999999999998999999999999999999999988 88888 56788
Q ss_pred cccccccCCC
Q 017133 190 RLNWATFSGS 199 (376)
Q Consensus 190 ~~~~~~~~~~ 199 (376)
++.++.....
T Consensus 88 ~V~~a~~~~~ 97 (105)
T 2dh8_A 88 DPKPCTPRGM 97 (105)
T ss_dssp BCCCSCCSSC
T ss_pred EEEEccCCCC
Confidence 8888775543
No 175
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=127.48 Aligned_cols=83 Identities=13% Similarity=0.265 Sum_probs=74.1
Q ss_pred CCCCceEEECCCCCCCcHHHHH----HHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~----~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 280 (376)
..++++|||+|||+.+++++|+ ++|+ .||.|.+|.+.+ +++++|||||+|.+.++|..|++.|||..|.|+.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~-~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALAS-SQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhc-cCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 3456799999999999999876 6996 999999987753 5788999999999999999999999999999999
Q ss_pred eEEeecCCCCc
Q 017133 281 MRIDVATPKKA 291 (376)
Q Consensus 281 i~v~~~~~~~~ 291 (376)
|+|.|++.+..
T Consensus 102 l~V~~a~~~~~ 112 (127)
T 2a3j_A 102 LVITFSETPQS 112 (127)
T ss_dssp CEEEECCCCCH
T ss_pred EEEEEccCcch
Confidence 99999987654
No 176
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.6e-17 Score=122.72 Aligned_cols=84 Identities=20% Similarity=0.433 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
....++|||+|||+++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|++.|++..+ .++.+++
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~V 97 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPISV 97 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999988 5688888
Q ss_pred cccccC
Q 017133 192 NWATFS 197 (376)
Q Consensus 192 ~~~~~~ 197 (376)
.++...
T Consensus 98 ~~a~~~ 103 (106)
T 1p27_B 98 DWCFVR 103 (106)
T ss_dssp EESEES
T ss_pred EeecCC
Confidence 887643
No 177
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=124.37 Aligned_cols=78 Identities=22% Similarity=0.344 Sum_probs=72.5
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
...+|||+|||++++++||+++|+ .| .|..|.|++++. |+++|+|||+|.+.++|.+|| .||+..|+||.|+|..+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~-~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFH-GL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTT-TS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhc-cC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 356999999999999999999995 89 899999999976 999999999999999999999 79999999999999888
Q ss_pred CC
Q 017133 287 TP 288 (376)
Q Consensus 287 ~~ 288 (376)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 64
No 178
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.4e-18 Score=128.10 Aligned_cols=83 Identities=14% Similarity=0.266 Sum_probs=76.7
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCe-eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSV-KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
....++|||+|||+++++++|+++|+ .||.| ..|.|++++ +++++|||||+|.+.++|.+||+. |+..|.|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLE-GIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTT-TSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHH-hCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEE
Confidence 44568999999999999999999995 99999 889999997 899999999999999999999976 999999999999
Q ss_pred eecCCCC
Q 017133 284 DVATPKK 290 (376)
Q Consensus 284 ~~~~~~~ 290 (376)
.++.++.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997654
No 179
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=1.3e-17 Score=127.49 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=75.9
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCC---eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~---i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i 281 (376)
....++|||+|||+++|+++|+++|+ .||. |..|+|++++. ++++|||||+|.+.++|.+||+ ||+..|+||.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLS-DCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTT-TSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-HcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 34567999999999999999999995 9999 89999999976 9999999999999999999998 99999999999
Q ss_pred EEeecCCC
Q 017133 282 RIDVATPK 289 (376)
Q Consensus 282 ~v~~~~~~ 289 (376)
+|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99999654
No 180
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=8.1e-17 Score=120.33 Aligned_cols=85 Identities=27% Similarity=0.476 Sum_probs=77.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHh-cCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCc-CCCCCCc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSH-TGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL-MPNTDQP 188 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~-~~~~~~~ 188 (376)
.....++|||+|||+++++++|+++|.. ||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|++.. + .++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~--~g~~ 81 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGL--GSKP 81 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSS--SSSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCccc--CCEe
Confidence 4456899999999999999999999999 9999999999998 99999999999999999999999999988 8 5677
Q ss_pred ccccccccCC
Q 017133 189 FRLNWATFSG 198 (376)
Q Consensus 189 ~~~~~~~~~~ 198 (376)
+++.++....
T Consensus 82 l~v~~a~~~~ 91 (104)
T 2dhg_A 82 VRLSVAIPKA 91 (104)
T ss_dssp CCCCBCCCCC
T ss_pred EEEEEccCCC
Confidence 8888876544
No 181
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=128.59 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=76.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceE--EEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCC----cCCC
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGS----LMPN 184 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~--~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~----~~~~ 184 (376)
.....++|||+|||+++++++|+++|+.||.|.. |+|++|+.+|+++|||||+|.+. +|.+|+..|++. .+
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~-- 95 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI-- 95 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG--
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC--
Confidence 3456789999999999999999999999999976 99999999999999999999999 999999999998 66
Q ss_pred CCCcccccccccC
Q 017133 185 TDQPFRLNWATFS 197 (376)
Q Consensus 185 ~~~~~~~~~~~~~ 197 (376)
.++.|+|.++...
T Consensus 96 ~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 96 DGKTINVEFAKGS 108 (131)
T ss_dssp GGCCCCCEECCCS
T ss_pred CCEEEEEEECCCC
Confidence 6678888887654
No 182
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=124.00 Aligned_cols=87 Identities=21% Similarity=0.382 Sum_probs=79.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 85 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIR 85 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 345789999999999999999999999999999999999988999999999999999999999999999998 578889
Q ss_pred ccccccCCC
Q 017133 191 LNWATFSGS 199 (376)
Q Consensus 191 ~~~~~~~~~ 199 (376)
+.++.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 888875543
No 183
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=3.1e-17 Score=122.34 Aligned_cols=85 Identities=22% Similarity=0.430 Sum_probs=77.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......++|||+|||+++++++|+++|..|| |.+|+++.++.+++++|||||+|.+.++|.+|+ .|++..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l 85 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL--GDRSL 85 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE--TTEEC
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE--CCeEE
Confidence 3456789999999999999999999999997 999999999999999999999999999999999 8999988 56788
Q ss_pred cccccccCC
Q 017133 190 RLNWATFSG 198 (376)
Q Consensus 190 ~~~~~~~~~ 198 (376)
+|.++....
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dng_A 86 RVDIAEGRK 94 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 888887544
No 184
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.3e-17 Score=118.39 Aligned_cols=79 Identities=20% Similarity=0.451 Sum_probs=72.7
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..+.++|||+|||.++++++|+++|+ .||.|..|.+. +|||||+|.+.++|.+|++.||+..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFE-QYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHH-TSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 34668999999999999999999996 99999999987 4799999999999999999999999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
|++++...
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99887554
No 185
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.72 E-value=5.2e-18 Score=135.73 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=89.9
Q ss_pred CCcceEEEEEeCCHHHHHHHHHHh-CCceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCC
Q 017133 248 GRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESN 326 (376)
Q Consensus 248 ~~~~g~afV~f~~~~~A~~Al~~l-~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (376)
...+|+++|+|.+.++|++|++.| ||..++| .|.+.++..+..... ................
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~----------------~~~~~~~~~~~~~~~~ 72 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTE----------------GSHHHHHHMHRDSCPL 72 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEEC----------------SSSSCCCCSCSSSSTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccc----------------ccccccccccccCCCC
Confidence 467899999999999999999999 9999999 999998875432210 0000111122334456
Q ss_pred CcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCC-CeEEEEEeecCCCC
Q 017133 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVG-KGCGFVQFANRLVS 376 (376)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~-~g~afV~F~~~e~~ 376 (376)
.++|||+|||+++|+++|+++|+.||.|.+|+++++ +|||||+|.+.++|
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a 123 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDA 123 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHH
Confidence 789999999999999999999999999999999986 89999999998764
No 186
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.72 E-value=6.4e-17 Score=123.12 Aligned_cols=84 Identities=23% Similarity=0.459 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
....++|||+|||+++++++|+++|+.||.|.+|.++.++ +|.++|||||+|.+.++|.+|++.|++..+ .++.+++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~--~g~~l~V 80 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSL--HGKAIKV 80 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBC--SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 4568899999999999999999999999999999999998 899999999999999999999999999998 5678888
Q ss_pred cccccCC
Q 017133 192 NWATFSG 198 (376)
Q Consensus 192 ~~~~~~~ 198 (376)
.++....
T Consensus 81 ~~a~~~~ 87 (116)
T 2fy1_A 81 EQAKKPS 87 (116)
T ss_dssp EECCCSS
T ss_pred EECCCCC
Confidence 8887554
No 187
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=122.00 Aligned_cols=84 Identities=24% Similarity=0.447 Sum_probs=74.9
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
...+.++|||+|||.++++++|+++|+ .||.| +++.+ .+++++|||||+|.+.++|.+||+.||+..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFE-KATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCS-SCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 345678999999999999999999995 99976 56666 67899999999999999999999999999999999999
Q ss_pred eecCCCCcC
Q 017133 284 DVATPKKAS 292 (376)
Q Consensus 284 ~~~~~~~~~ 292 (376)
.|++++...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2fc9_A 86 ELQGPRGSP 94 (101)
T ss_dssp EECSSCCCC
T ss_pred EEcCCCCCC
Confidence 999887543
No 188
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.3e-18 Score=128.22 Aligned_cols=87 Identities=23% Similarity=0.405 Sum_probs=75.0
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..++++|||+|||.++++++|+++|+ .||.|..+.+..+..++.++|||||+|.+.++|.+||+.|+|..|.|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~-~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFA-RFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTH-HHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34568999999999999999999996 99999544333332368899999999999999999999999999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
|++++...
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99887654
No 189
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=2.4e-17 Score=121.27 Aligned_cols=83 Identities=22% Similarity=0.441 Sum_probs=76.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
++++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|++..+ .++.+++.+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~~ 78 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL--GSRFLKCGY 78 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEEE
Confidence 368999999999999999999999999999999999998999999999999999999999999999988 558888888
Q ss_pred cccCC
Q 017133 194 ATFSG 198 (376)
Q Consensus 194 ~~~~~ 198 (376)
+....
T Consensus 79 a~~~~ 83 (96)
T 2x1f_A 79 SSNSD 83 (96)
T ss_dssp CSCSS
T ss_pred cCCCC
Confidence 77543
No 190
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=121.55 Aligned_cols=85 Identities=29% Similarity=0.574 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEE-EEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~-~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
...++|||+|||+++++++|+++|+.||.|.++ ++++++.++.++|||||+|.+.++|.+|++.|++..+ .++.+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 80 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL--CNRPITV 80 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE--TTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 467999999999999999999999999999999 9999988999999999999999999999999999998 6788888
Q ss_pred cccccCCC
Q 017133 192 NWATFSGS 199 (376)
Q Consensus 192 ~~~~~~~~ 199 (376)
.++.....
T Consensus 81 ~~a~~~~~ 88 (96)
T 1x5t_A 81 SYAFKKDS 88 (96)
T ss_dssp EESCCCCC
T ss_pred EEecccCC
Confidence 88875443
No 191
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.9e-17 Score=120.41 Aligned_cols=79 Identities=18% Similarity=0.427 Sum_probs=72.3
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec--CcceEE
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS--SRPMRI 283 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~--g~~i~v 283 (376)
.+.++|||+|||.++++++|+++|+ .||.|..|.+..+ +|||||+|.+.++|.+|++.||+..+. |+.|+|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFD-RFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHH-TTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 4567999999999999999999995 9999999988753 679999999999999999999999999 999999
Q ss_pred eecCCCCc
Q 017133 284 DVATPKKA 291 (376)
Q Consensus 284 ~~~~~~~~ 291 (376)
.|++++..
T Consensus 88 ~~a~~~~~ 95 (97)
T 1why_A 88 DFAKSGPS 95 (97)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99988643
No 192
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.4e-17 Score=122.35 Aligned_cols=85 Identities=18% Similarity=0.294 Sum_probs=77.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCC-CCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT-GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~-g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
.....++|||+|||+++++++|+++|..|| |.+|+++.++.+ ++++|||||+|.+.++|.+|+ .|++..+ .++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l 86 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNKRI 86 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE--TTEEC
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe--CCcEE
Confidence 445679999999999999999999999999 999999999887 999999999999999999999 9999998 66788
Q ss_pred cccccccCCC
Q 017133 190 RLNWATFSGS 199 (376)
Q Consensus 190 ~~~~~~~~~~ 199 (376)
++.++.....
T Consensus 87 ~V~~a~~~~~ 96 (104)
T 1wi8_A 87 RVDVADQAQD 96 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 8888875543
No 193
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=121.35 Aligned_cols=82 Identities=18% Similarity=0.452 Sum_probs=75.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++. +.++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 88 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRL--YGRPIN 88 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEE--CCCEEE
Confidence 446789999999999999999999999999999999999985 99999999999999999999999999998 567788
Q ss_pred ccccc
Q 017133 191 LNWAT 195 (376)
Q Consensus 191 ~~~~~ 195 (376)
+.++.
T Consensus 89 V~~a~ 93 (95)
T 2ywk_A 89 VSGPS 93 (95)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 87764
No 194
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=1e-17 Score=124.12 Aligned_cols=81 Identities=25% Similarity=0.309 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCC
Q 017133 113 DETKTIWIGDLFH------WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (376)
Q Consensus 113 ~~~~~v~v~nLp~------~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~ 186 (376)
...++|||+|||+ ++++++|+++|+.||.|.+|++++++.+|+++|||||+|.+.++|.+|++.|++..+ .+
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~--~g 81 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL--DL 81 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS--SS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc--CC
Confidence 4578999999999 999999999999999999999999999999999999999999999999999999998 44
Q ss_pred -Ccccccccc
Q 017133 187 -QPFRLNWAT 195 (376)
Q Consensus 187 -~~~~~~~~~ 195 (376)
+.+++.++.
T Consensus 82 ~r~l~V~~a~ 91 (100)
T 3ns6_A 82 KHRLFLYTMK 91 (100)
T ss_dssp SCBCEEEESH
T ss_pred CeEEEEEECc
Confidence 788887765
No 195
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=122.44 Aligned_cols=84 Identities=12% Similarity=0.127 Sum_probs=76.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|..||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 88 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVK 88 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee--CCeEEE
Confidence 345678999999999999999999999999999999999988999999999999999999999999999988 567788
Q ss_pred cccccc
Q 017133 191 LNWATF 196 (376)
Q Consensus 191 ~~~~~~ 196 (376)
+.++..
T Consensus 89 V~~a~~ 94 (98)
T 2cqp_A 89 LVLGSG 94 (98)
T ss_dssp EEESSC
T ss_pred EEEcCC
Confidence 887653
No 196
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=4.2e-18 Score=133.06 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=74.9
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
....++|||+|||+++|++||+++|+ .|| |.+|.|++++. ++++|||||+|.+.++|.+|| .+|+..|+||.|+|.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~-~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFS-PLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHC-SCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 34567999999999999999999995 999 77999999976 999999999999999999999 889999999999999
Q ss_pred ecCCCCc
Q 017133 285 VATPKKA 291 (376)
Q Consensus 285 ~~~~~~~ 291 (376)
++.....
T Consensus 119 ~a~~~~~ 125 (139)
T 2hgn_A 119 LNSTTGA 125 (139)
T ss_dssp ECCCSCC
T ss_pred ECCCCCC
Confidence 9987643
No 197
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9e-17 Score=119.85 Aligned_cols=86 Identities=27% Similarity=0.516 Sum_probs=76.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......++|||+|||+++++++|+++|+.||.|.+|+++.++. .++|||||+|.+.++|.+|++.|++..+ .++.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 85 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKI--LGKEV 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEE--TTEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCc--CCCeE
Confidence 3556789999999999999999999999999999999999863 3789999999999999999999999998 57889
Q ss_pred cccccccCCC
Q 017133 190 RLNWATFSGS 199 (376)
Q Consensus 190 ~~~~~~~~~~ 199 (376)
++.++.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2cqi_A 86 KVNWATTPSS 95 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEECCCCcc
Confidence 9998876543
No 198
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=123.68 Aligned_cols=87 Identities=16% Similarity=0.291 Sum_probs=79.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCce--------EEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcC
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--------NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~--------~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~ 182 (376)
.....++|||+|||+++++++|+++|..||.|. .|+++.++.+++++|||||+|.+.++|.+|++.|++..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 446789999999999999999999999999999 699999988999999999999999999999999999998
Q ss_pred CCCCCcccccccccCCC
Q 017133 183 PNTDQPFRLNWATFSGS 199 (376)
Q Consensus 183 ~~~~~~~~~~~~~~~~~ 199 (376)
.++.|++.++.....
T Consensus 91 --~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 --QGSKLKVSLARKKPP 105 (113)
T ss_dssp --TTEECEEECSSCCCC
T ss_pred --CCCEEEEEECCCCCC
Confidence 568888888775443
No 199
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-17 Score=129.30 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=76.5
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
....++|||+|||+++++++|+++|+ .||.|..+.++.+..+++++|||||+|.+.++|.+||+ ||+..|+|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFK-KLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSC-SSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34568999999999999999999995 99999987677777789999999999999999999998 99999999999999
Q ss_pred ecCCCC
Q 017133 285 VATPKK 290 (376)
Q Consensus 285 ~~~~~~ 290 (376)
++..+.
T Consensus 100 ~a~~~~ 105 (124)
T 1wel_A 100 PITKKG 105 (124)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997653
No 200
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-17 Score=118.99 Aligned_cols=73 Identities=19% Similarity=0.383 Sum_probs=67.3
Q ss_pred ceEEECCCCCCC------cHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc-ce
Q 017133 209 LSIFVGDLAPDV------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR-PM 281 (376)
Q Consensus 209 ~~l~v~nlp~~~------t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~-~i 281 (376)
++|||+|||..+ ++++|+++|+ .||.|.++.+. +.+++++|||||+|.+.++|.+|++.|||..++|+ .|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHH-TTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHh-hcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 689999999999 7799999996 99999999987 35789999999999999999999999999999999 88
Q ss_pred EEe
Q 017133 282 RID 284 (376)
Q Consensus 282 ~v~ 284 (376)
+|.
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 201
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=3.2e-17 Score=121.82 Aligned_cols=76 Identities=13% Similarity=0.270 Sum_probs=70.6
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
..++|||+|||.++++++|+++|+ .||.|.++++. +++|||||+|.+.++|.+|++.|||..++|+.|+|.|+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQ-NFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHH-TTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHH-hCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 457999999999999999999995 99999999987 35789999999999999999999999999999999999
Q ss_pred CCC
Q 017133 287 TPK 289 (376)
Q Consensus 287 ~~~ 289 (376)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 764
No 202
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=7.7e-17 Score=121.21 Aligned_cols=79 Identities=24% Similarity=0.310 Sum_probs=72.9
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC-----cc
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS-----RP 280 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g-----~~ 280 (376)
...++|||+|||+++++++|+++|+ .||.|..|.|+.+ |||||+|.+.++|.+||+.|||..|.| +.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 4567999999999999999999995 9999999999876 799999999999999999999999999 99
Q ss_pred eEEeecCCCCcC
Q 017133 281 MRIDVATPKKAS 292 (376)
Q Consensus 281 i~v~~~~~~~~~ 292 (376)
|+|.++.++...
T Consensus 85 i~V~~a~~~~~~ 96 (108)
T 1x4c_A 85 IRVKVDGPRSPS 96 (108)
T ss_dssp EEEEESSCCSCC
T ss_pred EEEEeCCCCCCC
Confidence 999999886543
No 203
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.8e-17 Score=119.05 Aligned_cols=80 Identities=19% Similarity=0.351 Sum_probs=72.0
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
....++|||+|||.++++++|+++|+ .||.|. +.++.+ .++|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~-~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALR-ELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHH-HTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHH-hcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44567999999999999999999995 999997 666643 678999999999999999999999999999999999
Q ss_pred ecCCCC
Q 017133 285 VATPKK 290 (376)
Q Consensus 285 ~~~~~~ 290 (376)
+++++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998764
No 204
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=5e-17 Score=120.29 Aligned_cols=82 Identities=24% Similarity=0.452 Sum_probs=74.3
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
...+.++|||+|||.++++++|+++|+ .||.|..|.+.++ +|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFE-KYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTS-TTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHh-hcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 344668999999999999999999995 9999999998754 689999999999999999999999999999999
Q ss_pred eecCCCCcC
Q 017133 284 DVATPKKAS 292 (376)
Q Consensus 284 ~~~~~~~~~ 292 (376)
.|++++...
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2cpj_A 84 RFACHSASL 92 (99)
T ss_dssp EESSCCSCC
T ss_pred EEcCCCCCC
Confidence 999886543
No 205
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=119.51 Aligned_cols=80 Identities=26% Similarity=0.347 Sum_probs=73.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
.+.++|||+|||+++++++|+++|+.||.|.+++++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~~~~~ 80 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV--QAQMAKQS 80 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC--CEESCCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE--eeEEEeec
Confidence 5688999999999999999999999999999999999998999999999999999999999999999988 55666666
Q ss_pred cc
Q 017133 193 WA 194 (376)
Q Consensus 193 ~~ 194 (376)
+.
T Consensus 81 ~~ 82 (85)
T 1x4e_A 81 GP 82 (85)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 206
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=3.9e-17 Score=120.69 Aligned_cols=85 Identities=21% Similarity=0.362 Sum_probs=77.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCC---CCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQ---TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
.+.++|||+|||+++++++|+++|+.||.|.+|+++.++. ++.++|||||+|.+.++|.+|++.|++..+ .++.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 80 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV--DGHKL 80 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE--TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee--CCeEE
Confidence 4679999999999999999999999999999999999876 668999999999999999999999999998 56788
Q ss_pred cccccccCCC
Q 017133 190 RLNWATFSGS 199 (376)
Q Consensus 190 ~~~~~~~~~~ 199 (376)
++.++.....
T Consensus 81 ~V~~a~~~~~ 90 (98)
T 2cpf_A 81 EVRISERATK 90 (98)
T ss_dssp EEECSSCSSC
T ss_pred EEEEccCCCC
Confidence 8888875443
No 207
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=5.7e-17 Score=121.69 Aligned_cols=80 Identities=24% Similarity=0.481 Sum_probs=72.2
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
......++|||+|||.++++++|+++|+ .||.|..|.+. +|||||+|.+.++|.+|++.|+|..++|+.|+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFG-PFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHT-TTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3445678999999999999999999995 99999999987 58999999999999999999999999999999
Q ss_pred EeecCCCCc
Q 017133 283 IDVATPKKA 291 (376)
Q Consensus 283 v~~~~~~~~ 291 (376)
|.|++++..
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999988654
No 208
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5e-17 Score=120.61 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=72.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+|.+++++. |.++|||||+|.+.++|.+|+. +++..+ .++.++
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~--~gr~l~ 82 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKY--KETDLL 82 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCC--TTTTCE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEE--CCEEEE
Confidence 345678999999999999999999999999999999999986 9999999999999999999998 888888 556777
Q ss_pred ccccc
Q 017133 191 LNWAT 195 (376)
Q Consensus 191 ~~~~~ 195 (376)
+.++.
T Consensus 83 V~~~~ 87 (103)
T 1s79_A 83 ILFKD 87 (103)
T ss_dssp EEEHH
T ss_pred EEEch
Confidence 76654
No 209
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.71 E-value=2.1e-17 Score=141.20 Aligned_cols=83 Identities=17% Similarity=0.264 Sum_probs=77.6
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCC--CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYP--SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g--~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..++|||+||++++|+++|+++|+ .|| .|.+|+|++++.+++++|||||+|.+.++|.+||+.||++.|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHH-HHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 456899999999999999999995 999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 017133 285 VATPKK 290 (376)
Q Consensus 285 ~~~~~~ 290 (376)
+++...
T Consensus 146 ~a~~~~ 151 (229)
T 3q2s_C 146 PVNKQF 151 (229)
T ss_dssp ECCHHH
T ss_pred ECCCCc
Confidence 997653
No 210
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-16 Score=118.92 Aligned_cols=86 Identities=22% Similarity=0.414 Sum_probs=76.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......++|||+|||+++++++|+++|..||.|.+|+++.++. .++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVV--EGRKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEE--CCEEE
Confidence 3556789999999999999999999999999999999999863 3899999999999999999999999998 66888
Q ss_pred cccccccCCC
Q 017133 190 RLNWATFSGS 199 (376)
Q Consensus 190 ~~~~~~~~~~ 199 (376)
++.++.....
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cq3_A 86 EVNNATARVM 95 (103)
T ss_dssp EEEECCSSCC
T ss_pred EEEEcccCCC
Confidence 8888875543
No 211
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=9.3e-17 Score=117.11 Aligned_cols=80 Identities=19% Similarity=0.436 Sum_probs=72.8
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
.....++|||+|||.++++++|+++|+ .||.|..|.+.++ ||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFE-EYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHH-TTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 345678999999999999999999996 9999999998743 9999999999999999999999999999999
Q ss_pred eecCCCCcC
Q 017133 284 DVATPKKAS 292 (376)
Q Consensus 284 ~~~~~~~~~ 292 (376)
.|++++...
T Consensus 77 ~~a~~~~~~ 85 (92)
T 2dgt_A 77 QLSTSRLRT 85 (92)
T ss_dssp EESSCCCSC
T ss_pred EEccCCCCC
Confidence 999887544
No 212
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-16 Score=121.38 Aligned_cols=84 Identities=24% Similarity=0.408 Sum_probs=76.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|..||.|.+|+++.++ ++.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 87 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLL--FDRPMH 87 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEe--CCCEEE
Confidence 44568999999999999999999999999999999999998 699999999999999999999999999998 567888
Q ss_pred ccccccC
Q 017133 191 LNWATFS 197 (376)
Q Consensus 191 ~~~~~~~ 197 (376)
+.++...
T Consensus 88 v~~a~~~ 94 (114)
T 2do0_A 88 VKMDERA 94 (114)
T ss_dssp EEECSCC
T ss_pred EEEcccC
Confidence 8887643
No 213
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.7e-17 Score=122.84 Aligned_cols=81 Identities=14% Similarity=0.204 Sum_probs=71.8
Q ss_pred CCCCceEEECCCCCC-CcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC--ceecCcce
Q 017133 205 ACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG--VYCSSRPM 281 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~-~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g--~~~~g~~i 281 (376)
..++++|||+|||++ ++++||+++|+ .||.|.+|.+++ ++|||||+|++.++|.+|++.|++ ..|.||.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~-~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAE-PYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTT-TTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHH-hcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 456789999999998 99999999995 999999999874 368999999999999999998864 56999999
Q ss_pred EEeecCCCCcC
Q 017133 282 RIDVATPKKAS 292 (376)
Q Consensus 282 ~v~~~~~~~~~ 292 (376)
+|.|+..+...
T Consensus 95 ~V~~a~~~~~~ 105 (112)
T 1x4f_A 95 KVDLSEKYKKL 105 (112)
T ss_dssp EEEEECSCSSS
T ss_pred EEEECcccccc
Confidence 99999876544
No 214
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=2.9e-17 Score=123.11 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=70.7
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCC-CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYP-SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g-~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
..++|||+|||+++++++|+++|+ .|| .|..+.+.. +.++|||||+|.+.++|.+||+.|||..|.|+.|+|.+
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~-~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAR-ENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHH-HHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-HhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 457999999999999999999995 999 899998753 34789999999999999999999999999999999999
Q ss_pred cCCC
Q 017133 286 ATPK 289 (376)
Q Consensus 286 ~~~~ 289 (376)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 9754
No 215
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=4.6e-17 Score=123.01 Aligned_cols=85 Identities=19% Similarity=0.391 Sum_probs=78.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|+..|++..+ .++.++
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 99 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQ 99 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999998 568888
Q ss_pred ccccccC
Q 017133 191 LNWATFS 197 (376)
Q Consensus 191 ~~~~~~~ 197 (376)
+.++...
T Consensus 100 V~~a~~~ 106 (110)
T 1oo0_B 100 VDWCFVK 106 (110)
T ss_dssp EEESEES
T ss_pred EEEcccC
Confidence 8887654
No 216
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=3e-16 Score=121.17 Aligned_cols=85 Identities=19% Similarity=0.293 Sum_probs=78.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++ +|+++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEES--SSCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEE--CCcEEE
Confidence 44678899999999999999999999999999999999998 899999999999999999999999999988 568889
Q ss_pred ccccccCC
Q 017133 191 LNWATFSG 198 (376)
Q Consensus 191 ~~~~~~~~ 198 (376)
+.++....
T Consensus 108 V~~a~~~~ 115 (124)
T 2kt5_A 108 IQLVASQI 115 (124)
T ss_dssp EEEECCTT
T ss_pred EEEeCCCC
Confidence 88887543
No 217
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=5e-18 Score=126.24 Aligned_cols=84 Identities=17% Similarity=0.453 Sum_probs=75.9
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEee
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDV 285 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~ 285 (376)
...++|||+|||.++++++|+++|+ .||.|.. .++.+..++.++|||||+|.+.++|.+||+ |+|..|.|+.|+|.+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAIS-ELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 3567999999999999999999996 9999988 666776778999999999999999999998 999999999999999
Q ss_pred cCCCCcC
Q 017133 286 ATPKKAS 292 (376)
Q Consensus 286 ~~~~~~~ 292 (376)
+.++...
T Consensus 92 a~~~~~~ 98 (101)
T 1fj7_A 92 PKGRDGT 98 (101)
T ss_dssp CSCCCCS
T ss_pred cCCCCCC
Confidence 9876543
No 218
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-16 Score=117.81 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=72.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
...++++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.|++..+...+++++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456789999999999999999999999999999998864 5899999999999999999998765444788999
Q ss_pred ccccccCCCC
Q 017133 191 LNWATFSGSD 200 (376)
Q Consensus 191 ~~~~~~~~~~ 200 (376)
+.++......
T Consensus 85 V~~a~~~~~~ 94 (104)
T 1wex_A 85 FNYSTSKRIT 94 (104)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCcccc
Confidence 9998765443
No 219
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=1e-16 Score=117.88 Aligned_cols=78 Identities=17% Similarity=0.363 Sum_probs=70.6
Q ss_pred cCCCCCceEEECCCCC-CCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 017133 203 TEACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~-~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i 281 (376)
....++++|||+|||. ++++++|+++|+ .||.|..+.+. +|||||+|.+.++|.+|++.|+|..++|+.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~-~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHG-GGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3445678999999998 999999999996 99999999883 6899999999999999999999999999999
Q ss_pred EEeecCCC
Q 017133 282 RIDVATPK 289 (376)
Q Consensus 282 ~v~~~~~~ 289 (376)
+|.|++.+
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99999765
No 220
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.70 E-value=1.1e-17 Score=117.20 Aligned_cols=75 Identities=27% Similarity=0.502 Sum_probs=71.0
Q ss_pred eEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 210 SIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 210 ~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
+|||+|||.++++++|+++|+ .||.|..+.+.+++.++.++|||||+|.+.++|.+|++ +++..+.|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFG-GFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHH-HHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 589999999999999999996 99999999999998889999999999999999999997 4899999999999875
No 221
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=8.2e-17 Score=115.57 Aligned_cols=77 Identities=17% Similarity=0.365 Sum_probs=70.6
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh-CCceecCcceE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM-NGVYCSSRPMR 282 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l-~g~~~~g~~i~ 282 (376)
.....++|||+|||.++++++|+++|+ .||.|..+.+.++ +|||||+|.+.++|.+|++.| ++..+.|+.|+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~-~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFY-QFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHH-TTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHH-hCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEE
Confidence 344668999999999999999999996 9999999999864 689999999999999999999 99999999999
Q ss_pred EeecC
Q 017133 283 IDVAT 287 (376)
Q Consensus 283 v~~~~ 287 (376)
|.|++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99984
No 222
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.8e-17 Score=121.79 Aligned_cols=81 Identities=22% Similarity=0.467 Sum_probs=74.3
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
....++|||+|||.++++++|+++|+ .||.|..|.+..+ +|||||+|.+.++|.+|++.|+|..|.|+.|+|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFS-PFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHH-HHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567999999999999999999996 9999999999876 6899999999999999999999999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
|++++...
T Consensus 95 ~a~~~~~~ 102 (109)
T 1x4g_A 95 WGKESPDM 102 (109)
T ss_dssp CCCCCCSS
T ss_pred ecCCCCCC
Confidence 99887544
No 223
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=125.00 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=75.9
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCC---eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPS---VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~---i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i 281 (376)
....++|||+|||+++|++||+++|+ .||. |..|.|++++. |+++|||||+|.+.++|.+||+ ||+..|+||.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFS-DCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYV 84 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTT-TSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHH-hcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEE
Confidence 44667999999999999999999995 9888 89999999977 9999999999999999999998 99999999999
Q ss_pred EEeecCCC
Q 017133 282 RIDVATPK 289 (376)
Q Consensus 282 ~v~~~~~~ 289 (376)
+|.++.++
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99999764
No 224
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=4.3e-17 Score=117.57 Aligned_cols=80 Identities=24% Similarity=0.427 Sum_probs=71.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|.+|++ +++..+ .++.++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~--~g~~i~ 83 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRL--DGRVID 83 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEE--CCEEEE
Confidence 45678999999999999999999999999999999999999899999999999999999999996 466666 556666
Q ss_pred ccc
Q 017133 191 LNW 193 (376)
Q Consensus 191 ~~~ 193 (376)
+.+
T Consensus 84 v~~ 86 (87)
T 3s7r_A 84 PKK 86 (87)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 225
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=4.4e-17 Score=130.51 Aligned_cols=81 Identities=25% Similarity=0.462 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcC--CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
...++|||+|||+++++++|+++|+.|| .|.+|+++.|+.+|+++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~--~Gr~l~ 130 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL--NGEKVD 130 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE--TTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCeEeE
Confidence 4578999999999999999999999999 999999999999999999999999999999999999999998 567788
Q ss_pred ccccc
Q 017133 191 LNWAT 195 (376)
Q Consensus 191 ~~~~~ 195 (376)
|.++.
T Consensus 131 V~~a~ 135 (156)
T 3n9u_C 131 VRPAT 135 (156)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 87764
No 226
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.70 E-value=1.7e-16 Score=115.74 Aligned_cols=82 Identities=20% Similarity=0.321 Sum_probs=74.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
....++|||+|||+++++++|+++|+.||.|.+++++++ ++.++|||||+|.+.++|.+|++.|++..+ .++.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~--~g~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKL--SGREIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCB--TTBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCcEEEE
Confidence 356899999999999999999999999999999999984 789999999999999999999999999998 5678888
Q ss_pred cccccC
Q 017133 192 NWATFS 197 (376)
Q Consensus 192 ~~~~~~ 197 (376)
.++...
T Consensus 81 ~~a~~~ 86 (92)
T 2dgv_A 81 RIDRNA 86 (92)
T ss_dssp EECSCC
T ss_pred EEcCCC
Confidence 887654
No 227
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=118.33 Aligned_cols=86 Identities=24% Similarity=0.310 Sum_probs=75.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......++|||+|||+++++++|+++|..||.|.+|+++.++.+++++|||||+|.+.++|.+|++. +..+ .++.+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~--~g~~l 85 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMI--DGRWC 85 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEE--TTEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCee--CCeEE
Confidence 3556788999999999999999999999999999999999998999999999999999999999983 5555 56788
Q ss_pred cccccccCCC
Q 017133 190 RLNWATFSGS 199 (376)
Q Consensus 190 ~~~~~~~~~~ 199 (376)
++.++.....
T Consensus 86 ~v~~a~~~~~ 95 (103)
T 2cqg_A 86 DCKLPNSKQS 95 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEEecCCCCc
Confidence 8888765433
No 228
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.1e-16 Score=116.90 Aligned_cols=81 Identities=22% Similarity=0.467 Sum_probs=72.3
Q ss_pred cCCCCCceEEECCCCCCCcHHHHHHHHhhhC--CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 017133 203 TEACSDLSIFVGDLAPDVTDSILQETFSSKY--PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (376)
Q Consensus 203 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~--g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 280 (376)
....+.++|||+|||.++++++|+++|+ .| |.|..+.+. +|||||+|.+.++|.+|++.|||..|.|+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFN-NIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHH-TTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHH-hcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3345678999999999999999999996 99 999988764 569999999999999999999999999999
Q ss_pred eEEeecCCCCcC
Q 017133 281 MRIDVATPKKAS 292 (376)
Q Consensus 281 i~v~~~~~~~~~ 292 (376)
|+|.|++++...
T Consensus 81 l~v~~a~~~~~~ 92 (99)
T 2cpd_A 81 IEVTLAKPVDKD 92 (99)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCCCC
Confidence 999999886543
No 229
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=121.08 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=72.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
...+.++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|.+|++.+++......+++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4456889999999999999999999999999999999876 5899999999999999999888542222678999
Q ss_pred ccccccCCCCC
Q 017133 191 LNWATFSGSDR 201 (376)
Q Consensus 191 ~~~~~~~~~~~ 201 (376)
|.++.......
T Consensus 101 V~~a~~k~~~~ 111 (119)
T 2ad9_A 101 IQFSNHKELKT 111 (119)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCCCCCc
Confidence 99987554433
No 230
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=4.1e-17 Score=114.16 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=68.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccccc
Q 017133 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (376)
Q Consensus 117 ~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 194 (376)
+|||+|||+++++++|+++|+.||.|.+++++.++.+|+++|||||+|.+.++|++|++ +++..+ .++.+++.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~--~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI--NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS--SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE--CCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999997 899888 5566776653
No 231
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=1.8e-17 Score=121.79 Aligned_cols=81 Identities=12% Similarity=0.155 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||+++++++|+++|..||.|.+++++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~gr~l~v~ 90 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI--GSRKVKLS 90 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEE
Confidence 4568999999999999999999999999999999999988999999999999999999999999999998 56777777
Q ss_pred ccc
Q 017133 193 WAT 195 (376)
Q Consensus 193 ~~~ 195 (376)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 654
No 232
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.3e-17 Score=119.39 Aligned_cols=83 Identities=18% Similarity=0.178 Sum_probs=72.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||. ++|+|+.++ +|+++|||||+|.+.++|.+|+ .+++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~ 85 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANM--QHRYVE 85 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeE--CCcEEE
Confidence 3456789999999999999999999999995 499999998 8999999999999999999999 4788888 556778
Q ss_pred ccccccCC
Q 017133 191 LNWATFSG 198 (376)
Q Consensus 191 ~~~~~~~~ 198 (376)
+.++....
T Consensus 86 V~~~~~~~ 93 (102)
T 1wez_A 86 LFLNSTAG 93 (102)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 77765443
No 233
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.69 E-value=1.3e-16 Score=118.90 Aligned_cols=79 Identities=30% Similarity=0.519 Sum_probs=72.2
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..+.++|||+|||.++++++|+++|+ .||.|..|.+. ++||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFS-QFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHH-HHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 34568999999999999999999995 99999999886 3499999999999999999999999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
|++++...
T Consensus 79 ~a~~~~~~ 86 (103)
T 2dgu_A 79 FAKPPDQK 86 (103)
T ss_dssp ECCCCCCC
T ss_pred EcCCCccc
Confidence 99887654
No 234
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=3.7e-17 Score=120.54 Aligned_cols=83 Identities=22% Similarity=0.404 Sum_probs=75.0
Q ss_pred CCCCceEEECCCCCCCcHHHHH----HHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQ----ETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~----~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 280 (376)
..++++|||+|||.++++++|+ ++|+ .||.|..|.+.. ++.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~-~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFS-RFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHG-GGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 3467899999999999999999 9995 999999998873 4678899999999999999999999999999999
Q ss_pred eEEeecCCCCc
Q 017133 281 MRIDVATPKKA 291 (376)
Q Consensus 281 i~v~~~~~~~~ 291 (376)
|+|.|++++..
T Consensus 81 l~v~~a~~~~~ 91 (97)
T 1nu4_A 81 MRIQYAKTDSD 91 (97)
T ss_dssp CEEEECSSCCT
T ss_pred EEEEEccCCCc
Confidence 99999988654
No 235
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.2e-16 Score=118.10 Aligned_cols=85 Identities=15% Similarity=0.255 Sum_probs=74.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......++|||+|||+++++++|+++|+.||.|.+|++..+ +.++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 91 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDY--DGYRL 91 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEE--CCeEE
Confidence 34567899999999999999999999999999999999654 56899999999999999999999999988 56788
Q ss_pred cccccccCCC
Q 017133 190 RLNWATFSGS 199 (376)
Q Consensus 190 ~~~~~~~~~~ 199 (376)
+|.++.....
T Consensus 92 ~V~~a~~~~~ 101 (109)
T 1x4a_A 92 RVEFPRSGRG 101 (109)
T ss_dssp EEECCCCCCC
T ss_pred EEEEcccCCC
Confidence 8888875443
No 236
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-16 Score=119.23 Aligned_cols=85 Identities=25% Similarity=0.494 Sum_probs=75.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCC------
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN------ 184 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~------ 184 (376)
.....++|||+|||+++++++|+++|..||.|.+|+++.++ ++.++|||||+|.+.++|.+|++.|++..+.+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 34567899999999999999999999999999999999998 89999999999999999999999999998854
Q ss_pred CCCccccccccc
Q 017133 185 TDQPFRLNWATF 196 (376)
Q Consensus 185 ~~~~~~~~~~~~ 196 (376)
.++++++.|+..
T Consensus 100 ~~~~l~v~~a~p 111 (114)
T 1x5o_A 100 PTEPLLCKFSGP 111 (114)
T ss_dssp CSSCBEEEECCC
T ss_pred CCCceeEEccCC
Confidence 356677777653
No 237
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=119.18 Aligned_cols=82 Identities=20% Similarity=0.188 Sum_probs=72.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceE-EEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN-VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~-~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
.....++|||+|||+++++++|+++|..||.|.+ |+++.+ .+|+++|||||+|.+.++|.+|++. ++..+ .++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~--~gr~i 86 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERI--GHRYI 86 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCS--SSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-Ccchh--CCcEE
Confidence 3456789999999999999999999999999987 888888 6899999999999999999999987 88888 55678
Q ss_pred ccccccc
Q 017133 190 RLNWATF 196 (376)
Q Consensus 190 ~~~~~~~ 196 (376)
++.++..
T Consensus 87 ~v~~~~~ 93 (104)
T 1wg5_A 87 EIFKSSR 93 (104)
T ss_dssp EEEEECT
T ss_pred EEEECCH
Confidence 8777653
No 238
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=115.67 Aligned_cols=79 Identities=22% Similarity=0.423 Sum_probs=72.0
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
....++|||+|||.++++++|+++|+ .||.|..|.+.+ +||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFE-RRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHH-HHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-cCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44678999999999999999999996 999999999874 399999999999999999999999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
|+++....
T Consensus 77 ~a~~~~~~ 84 (90)
T 2dnp_A 77 LSTKGQKK 84 (90)
T ss_dssp ESCCCCCC
T ss_pred ECCCCCCC
Confidence 99887443
No 239
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=1.6e-16 Score=119.89 Aligned_cols=96 Identities=26% Similarity=0.475 Sum_probs=78.1
Q ss_pred CCCcccccccccCCCCCccCCCCCceEEECCCCCC-CcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHH
Q 017133 185 TDQPFRLNWATFSGSDRRTEACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENE 263 (376)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 263 (376)
.+..+++..+.... ........++|||+|||.+ +++++|+++|+ .||.|..|.+ ++|||||+|.+.++
T Consensus 6 ~g~~~~~~~s~~~~--~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~-~~G~v~~v~i--------~~g~afV~f~~~~~ 74 (110)
T 1wf1_A 6 SGMSLKLQASNVTN--KNDPKSINSRVFIGNLNTALVKKSDVETIFS-KYGRVAGCSV--------HKGYAFVQYSNERH 74 (110)
T ss_dssp CSCCCCCCCCCSCC--SCCCTTCSSEEEECSCCCSSCCHHHHHHHHG-GGSCCSEEEE--------ETTEEEEECSSSHH
T ss_pred CCcccccccCCCCC--CCCCCCCCcEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEE--------eCCEEEEEECCHHH
Confidence 34455555444322 2223345679999999999 99999999995 9999999988 46899999999999
Q ss_pred HHHHHHHhCCceecCcceEEeecCCCCc
Q 017133 264 RSRAMTEMNGVYCSSRPMRIDVATPKKA 291 (376)
Q Consensus 264 A~~Al~~l~g~~~~g~~i~v~~~~~~~~ 291 (376)
|.+|++.|++..|+|+.|+|.|++....
T Consensus 75 A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 75 ARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999999999986543
No 240
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=7.4e-17 Score=118.75 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=71.1
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
...+.++|||+|||+ ++++++|+++|++||.|.+|++++++ |||||+|.+.++|..|++.|++......+++|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 445789999999999 99999999999999999999998764 79999999999999999999876533378899
Q ss_pred cccccccC
Q 017133 190 RLNWATFS 197 (376)
Q Consensus 190 ~~~~~~~~ 197 (376)
+|.++...
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99988743
No 241
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=6e-17 Score=126.70 Aligned_cols=86 Identities=21% Similarity=0.417 Sum_probs=78.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i--~g~~l~ 120 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELR 120 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE--CCEEEE
Confidence 445678999999999999999999999999999999999988999999999999999999999999999998 567888
Q ss_pred ccccccCC
Q 017133 191 LNWATFSG 198 (376)
Q Consensus 191 ~~~~~~~~ 198 (376)
|.++....
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 88887543
No 242
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.1e-18 Score=131.72 Aligned_cols=86 Identities=26% Similarity=0.375 Sum_probs=80.0
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeE--------EEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKG--------AKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 277 (376)
.+.++|||+|||.++++++|+++|+ .||.|.. |.+..++.++.++|||||+|.+.++|.+|++.|||..|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFK-QIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 4567999999999999999999995 9999999 899999888999999999999999999999999999999
Q ss_pred CcceEEeecCCCCcC
Q 017133 278 SRPMRIDVATPKKAS 292 (376)
Q Consensus 278 g~~i~v~~~~~~~~~ 292 (376)
|+.|+|.|++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999887544
No 243
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=1.8e-16 Score=122.88 Aligned_cols=86 Identities=21% Similarity=0.448 Sum_probs=78.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
...+.++|||+|||+++++++|+++|..||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 95 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL--MGQPIS 95 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCeEEE
Confidence 345678999999999999999999999999999999999998999999999999999999999999999998 667888
Q ss_pred ccccccCC
Q 017133 191 LNWATFSG 198 (376)
Q Consensus 191 ~~~~~~~~ 198 (376)
|.++....
T Consensus 96 v~~a~~~~ 103 (126)
T 3ex7_B 96 VDWCFVRG 103 (126)
T ss_dssp EEESEESS
T ss_pred EEEecCCC
Confidence 88876543
No 244
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=117.54 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=70.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
...++++|||+|||+++++++|+++|++||.|.+|+++++ +|||||+|.+.++|..|++.|++......+++++
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 4456789999999999999999999999999999998875 5899999999999999999876433223678999
Q ss_pred ccccccCCC
Q 017133 191 LNWATFSGS 199 (376)
Q Consensus 191 ~~~~~~~~~ 199 (376)
+.++.....
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999875443
No 245
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=119.51 Aligned_cols=83 Identities=23% Similarity=0.514 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||+++++++|+++|+.||.|.+++++.++.+|.++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 83 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF--SGRALRVD 83 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC--SSSCBEEE
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee--CCcEEEEE
Confidence 4568999999999999999999999999999999999988999999999999999999999999999998 56788888
Q ss_pred ccccC
Q 017133 193 WATFS 197 (376)
Q Consensus 193 ~~~~~ 197 (376)
++...
T Consensus 84 ~a~~~ 88 (104)
T 1p1t_A 84 NAASE 88 (104)
T ss_dssp ETTCT
T ss_pred eCCCc
Confidence 87643
No 246
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=6.9e-17 Score=121.55 Aligned_cols=85 Identities=25% Similarity=0.349 Sum_probs=72.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......++|||+|||+++++++|+++|+.||.|.+|++++++.+|.++|||||+|.+.++|.+|++.+ +..+ .++.+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l--~g~~l 96 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL--DSKTI 96 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE--TTEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC--CCEEE
Confidence 34567899999999999999999999999999999999999989999999999999999999999876 4666 66788
Q ss_pred cccccccC
Q 017133 190 RLNWATFS 197 (376)
Q Consensus 190 ~~~~~~~~ 197 (376)
++.++...
T Consensus 97 ~V~~a~~~ 104 (109)
T 2rs2_A 97 DPKVAFPR 104 (109)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 88887644
No 247
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=1.2e-16 Score=115.86 Aligned_cols=80 Identities=19% Similarity=0.387 Sum_probs=74.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
..++|||+|||+++++++|+++|+.||.|.+++++.++.+++++|||||+|.+.++|.+|+ .+++..+ .++.+++.+
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~--~g~~l~V~~ 81 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF--RGRQIKVIP 81 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE--TTEECEEEE
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE--CCcEEEEEE
Confidence 4689999999999999999999999999999999999889999999999999999999999 9999998 667888888
Q ss_pred ccc
Q 017133 194 ATF 196 (376)
Q Consensus 194 ~~~ 196 (376)
+..
T Consensus 82 a~~ 84 (89)
T 3ucg_A 82 KRT 84 (89)
T ss_dssp TTT
T ss_pred ccC
Confidence 764
No 248
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.68 E-value=1.3e-16 Score=119.80 Aligned_cols=82 Identities=20% Similarity=0.341 Sum_probs=75.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+.+++++|+++|..||.|.+|+++.++ +|.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 101 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPL--DGRPMN 101 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEE
Confidence 34678999999999999999999999999999999999998 899999999999999999999999999998 567777
Q ss_pred ccccc
Q 017133 191 LNWAT 195 (376)
Q Consensus 191 ~~~~~ 195 (376)
|.++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77653
No 249
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.4e-17 Score=124.01 Aligned_cols=80 Identities=18% Similarity=0.203 Sum_probs=72.8
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCe----eEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSV----KGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i----~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
..++|||+|||+++|++||+++|+ .||.| ..|.|+++ .+++++|||||+|.+.++|.+||+. |+..|++|.|+
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~-~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFG-QHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHH-TTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 457999999999999999999995 99875 68999998 4799999999999999999999976 99999999999
Q ss_pred EeecCCC
Q 017133 283 IDVATPK 289 (376)
Q Consensus 283 v~~~~~~ 289 (376)
|..+.++
T Consensus 99 V~~a~~~ 105 (123)
T 2dha_A 99 LFRSTAA 105 (123)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9998654
No 250
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=6.6e-17 Score=118.94 Aligned_cols=81 Identities=19% Similarity=0.373 Sum_probs=72.6
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..+.++|||+|||.++++++|+++|+ .||.|..+ ..++.++|||||+|.+.++|.+|++.|+|..|.|+.|+|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~-~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFE-DALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHC-SEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-hCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34568999999999999999999995 99988766 2458899999999999999999999999999999999999
Q ss_pred ecCCCCc
Q 017133 285 VATPKKA 291 (376)
Q Consensus 285 ~~~~~~~ 291 (376)
++.++..
T Consensus 87 ~a~~~~~ 93 (96)
T 1fjc_A 87 YTGEKGG 93 (96)
T ss_dssp ECSSSCC
T ss_pred EcCCCCC
Confidence 9987644
No 251
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=126.01 Aligned_cols=82 Identities=22% Similarity=0.446 Sum_probs=74.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.++++++++.+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 136 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL--FGRTIR 136 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE--TTEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 445689999999999999999999999999999999999988999999999999999999999999999888 466777
Q ss_pred cccc
Q 017133 191 LNWA 194 (376)
Q Consensus 191 ~~~~ 194 (376)
+.++
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 7653
No 252
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=1.3e-16 Score=130.55 Aligned_cols=85 Identities=28% Similarity=0.434 Sum_probs=79.1
Q ss_pred CCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 204 EACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
.....++|||+|||.++++++|+++|+ .||.|..|.|..+. ++.++|||||+|.+.++|.+|++.|+|..|.|+.|+|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHH-HTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 344568999999999999999999996 99999999999997 8999999999999999999999999999999999999
Q ss_pred eecCCCC
Q 017133 284 DVATPKK 290 (376)
Q Consensus 284 ~~~~~~~ 290 (376)
.|+....
T Consensus 162 ~~a~~~~ 168 (177)
T 2f3j_A 162 QLVASQI 168 (177)
T ss_dssp EEESSGG
T ss_pred EEecCCC
Confidence 9998754
No 253
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=2.2e-16 Score=125.28 Aligned_cols=79 Identities=22% Similarity=0.277 Sum_probs=71.2
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC--cceEEe
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS--RPMRID 284 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g--~~i~v~ 284 (376)
...+|||+||++.+|+++|+++|+ .||.|++|++..+ .++|+|||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs-~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFS-KFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHH-HHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHH-hcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 345799999999999999999996 9999999998654 357899999999999999999999999965 999999
Q ss_pred ecCCCC
Q 017133 285 VATPKK 290 (376)
Q Consensus 285 ~~~~~~ 290 (376)
|++++.
T Consensus 120 ~Ak~~~ 125 (164)
T 1sjr_A 120 FSKLTS 125 (164)
T ss_dssp ECSSSS
T ss_pred EecCCc
Confidence 999874
No 254
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=5.1e-17 Score=126.47 Aligned_cols=80 Identities=18% Similarity=0.155 Sum_probs=71.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCC---ceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~---v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 187 (376)
.....++|||+|||+++|+++|+++|+.||. |.+|++++++. |+++|||||+|.+.++|.+|++ +++..+ .++
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l--~gr 115 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESM--GHR 115 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEES--SSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEE--CCE
Confidence 3456889999999999999999999999999 89999999986 9999999999999999999998 999888 456
Q ss_pred ccccccc
Q 017133 188 PFRLNWA 194 (376)
Q Consensus 188 ~~~~~~~ 194 (376)
.|+|.++
T Consensus 116 ~i~V~~a 122 (136)
T 2hgl_A 116 YIEVFKS 122 (136)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 6666654
No 255
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=9.9e-17 Score=115.96 Aligned_cols=81 Identities=22% Similarity=0.356 Sum_probs=74.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCC-ccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQ-SEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~-~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
..++|||+|||+++++++|+++|+.||.|.++.++.+..++. ++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~ 80 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI--DGQEITAT 80 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE--TTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE--CCeEEEEE
Confidence 578999999999999999999999999999999999987666 899999999999999999999999998 56788888
Q ss_pred cccc
Q 017133 193 WATF 196 (376)
Q Consensus 193 ~~~~ 196 (376)
++..
T Consensus 81 ~a~~ 84 (88)
T 4a8x_A 81 AVLA 84 (88)
T ss_dssp EECC
T ss_pred ECCC
Confidence 7754
No 256
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.4e-16 Score=117.01 Aligned_cols=79 Identities=16% Similarity=0.338 Sum_probs=70.8
Q ss_pred CCCCceEEECCCCC-CCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEE
Q 017133 205 ACSDLSIFVGDLAP-DVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRI 283 (376)
Q Consensus 205 ~~~~~~l~v~nlp~-~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v 283 (376)
..++++|||+|||. ++++++|+++|+ .||.|..|.+. +|||||+|.+.++|.+|++.|+|..+.|+.|+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~-~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHT-TTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34678999999998 999999999995 99999999884 679999999999999999999999999999999
Q ss_pred eecCCCCcC
Q 017133 284 DVATPKKAS 292 (376)
Q Consensus 284 ~~~~~~~~~ 292 (376)
.|++.+...
T Consensus 78 ~~a~~~~~~ 86 (96)
T 2kvi_A 78 EVSSSNARP 86 (96)
T ss_dssp EEEECCCC-
T ss_pred EEcCcCCCC
Confidence 999876543
No 257
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.1e-16 Score=119.67 Aligned_cols=81 Identities=15% Similarity=0.221 Sum_probs=73.3
Q ss_pred ceEEECCC----CCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCC----HHH----HHHHHH--HhCCc
Q 017133 209 LSIFVGDL----APDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD----ENE----RSRAMT--EMNGV 274 (376)
Q Consensus 209 ~~l~v~nl----p~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~----~~~----A~~Al~--~l~g~ 274 (376)
+.|||+|| |+.+++++|+++|+ .||+|.++.++.|+.||+++|||||+|.+ .++ |.+|+. .|+|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs-~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFK-KYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHH-TTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 58999999 99999999999996 99999999999999999999999999996 333 889988 78999
Q ss_pred eecCcceEEeecCCCC
Q 017133 275 YCSSRPMRIDVATPKK 290 (376)
Q Consensus 275 ~~~g~~i~v~~~~~~~ 290 (376)
.|+||.|+|.+-+...
T Consensus 82 ~I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSI 97 (136)
T ss_dssp EETTEEEEEEECCTTH
T ss_pred eecCcEEEEEECcccH
Confidence 9999999999987654
No 258
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=9.2e-17 Score=121.24 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=70.5
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
..++|||+|||.++++++|+++|+ .||.|.+|.+.. ++|||||+|.+.++|.+||+.|||..|.|+.|.|.|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFS-RFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 457999999999999999999996 999999998763 4689999999999999999999999999999999999
Q ss_pred CCCC
Q 017133 287 TPKK 290 (376)
Q Consensus 287 ~~~~ 290 (376)
....
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 7643
No 259
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=5.3e-17 Score=114.21 Aligned_cols=76 Identities=28% Similarity=0.424 Sum_probs=69.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccccc
Q 017133 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWA 194 (376)
Q Consensus 116 ~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~ 194 (376)
++|||+|||+++++++|+++|+.||.|.++.++.++.+|+++|||||+|.+.++|.+|++.++ ..+ .++.++++++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~--~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL--DSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC--SSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc--CCEEEEEEec
Confidence 579999999999999999999999999999999999899999999999999999999999888 666 5567777654
No 260
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.67 E-value=7.4e-17 Score=119.49 Aligned_cols=82 Identities=18% Similarity=0.303 Sum_probs=71.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecC-CCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNK-QTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~-~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
.....++|||+|||+++++++|+++|+.|| |.+|+++.++ .+|+++|||||+|.+.++|.+|+ .|++..+ .++.+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~--~g~~l 90 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--GNRRI 90 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB--TTBCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE--CCeEE
Confidence 446789999999999999999999999999 9999999998 68999999999999999999999 8999998 56778
Q ss_pred ccccccc
Q 017133 190 RLNWATF 196 (376)
Q Consensus 190 ~~~~~~~ 196 (376)
++.++..
T Consensus 91 ~V~~a~~ 97 (100)
T 2j76_E 91 RVDVADQ 97 (100)
T ss_dssp CCEECCC
T ss_pred EEEeccC
Confidence 8887764
No 261
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=116.44 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=70.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
...++++|||+|||+++++++|+++|++||.|.+++++++ ||||||+|.+.++|.+|++.|++..+...+++++
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~ 90 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAF 90 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEE
Confidence 4457899999999999999999999999999999999854 5899999999999999999999887444788899
Q ss_pred cccccc
Q 017133 191 LNWATF 196 (376)
Q Consensus 191 ~~~~~~ 196 (376)
+.++..
T Consensus 91 V~~S~~ 96 (100)
T 3r27_A 91 VNYSTS 96 (100)
T ss_dssp EEECSC
T ss_pred EEeccc
Confidence 988764
No 262
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=6.4e-17 Score=123.86 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=72.7
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCee--EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVK--GAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
....++|||+|||+++|++||+++|+ .| .|. .|+|++|+. |+++|||||+|.+.++|.+||+ +++..|+||.|+
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~-~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~ 114 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFS-GL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIE 114 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTT-TS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-cC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEE
Confidence 34567899999999999999999996 89 677 899999977 9999999999999999999997 478999999999
Q ss_pred EeecCCC
Q 017133 283 IDVATPK 289 (376)
Q Consensus 283 v~~~~~~ 289 (376)
|.++..+
T Consensus 115 V~~a~~~ 121 (126)
T 2hgm_A 115 VFKSSQE 121 (126)
T ss_dssp CEEECHH
T ss_pred EEECCHH
Confidence 9988653
No 263
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=118.42 Aligned_cols=86 Identities=16% Similarity=0.249 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEe-ecCCCCCccceEEEEecCHHHHHHHHHHhc--CCcCCCCCC
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVI-RNKQTGQSEGYGFVEFYSRAAAEKVLQSYS--GSLMPNTDQ 187 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~-v~~~~~~-~~~~~g~~~g~afV~f~~~~~a~~a~~~l~--~~~~~~~~~ 187 (376)
..+.++|||+|||+++++++|+++|..||. |.++.++ .++.+|.++|||||+|.+.++|..|++.|+ +..+ .++
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~--~g~ 82 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL--WGH 82 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB--TTB
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee--cCC
Confidence 356889999999999999999999999998 9999998 788889999999999999999999999996 4677 567
Q ss_pred cccccccccCCC
Q 017133 188 PFRLNWATFSGS 199 (376)
Q Consensus 188 ~~~~~~~~~~~~ 199 (376)
.+++.|+.....
T Consensus 83 ~l~V~~a~~~~~ 94 (109)
T 2dis_A 83 QIAVDWAEPEID 94 (109)
T ss_dssp CCEEEESCSSCS
T ss_pred eEEEEEcCCCCC
Confidence 889998875543
No 264
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.67 E-value=2.8e-16 Score=126.51 Aligned_cols=86 Identities=26% Similarity=0.469 Sum_probs=79.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+|+|+.++.++.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~ 112 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL--DDRIIR 112 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE--TTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 445789999999999999999999999999999999999999999999999999999999999999999999 678899
Q ss_pred ccccccCC
Q 017133 191 LNWATFSG 198 (376)
Q Consensus 191 ~~~~~~~~ 198 (376)
|.|+....
T Consensus 113 V~~a~~~~ 120 (156)
T 1h2v_Z 113 TDWDAGFK 120 (156)
T ss_dssp EEEESCCC
T ss_pred EEECCCCC
Confidence 99887543
No 265
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.2e-17 Score=122.60 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=73.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCc-eEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQV-VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v-~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
.....++|||+|||+++++++|+++|..||.| .+|+|+.++ +|+++|||||+|.+.++|.+|++. ++..+ .++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~--~gr~i 86 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKL--NGREA 86 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEE--TTEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCcc--CCeEE
Confidence 44567899999999999999999999999999 899999998 899999999999999999999976 88888 56778
Q ss_pred ccccccc
Q 017133 190 RLNWATF 196 (376)
Q Consensus 190 ~~~~~~~ 196 (376)
+|.++..
T Consensus 87 ~v~~a~~ 93 (114)
T 2cpy_A 87 FVHVVTL 93 (114)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 8877653
No 266
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=114.59 Aligned_cols=82 Identities=16% Similarity=0.270 Sum_probs=74.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.| .|.+|+++++ .+|+++|||||+|.+.++|.+|++ +++..+ .++.|+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~--~gr~i~ 80 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYM--GGRYIE 80 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEE--TTEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCcee--CCcEEE
Confidence 34568999999999999999999999999 9999999999 689999999999999999999999 999998 567888
Q ss_pred ccccccC
Q 017133 191 LNWATFS 197 (376)
Q Consensus 191 ~~~~~~~ 197 (376)
+.++...
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 8887644
No 267
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=1e-16 Score=112.30 Aligned_cols=72 Identities=13% Similarity=0.217 Sum_probs=64.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
.+..|||+||++.++|++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.||+..+ .+++|++++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l--~gr~I~V~~ 77 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVL--ANTTIFAES 77 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEE--TTEEEEEEC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEE--CCcEEEEEE
Confidence 478899999999999999999999999999999865 579999999999999999999999988 445555544
No 268
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.4e-16 Score=115.80 Aligned_cols=81 Identities=12% Similarity=0.131 Sum_probs=73.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 017133 112 NDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~----~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 187 (376)
..+.++|||+|||+++++++|+ ++|+.||.|.+|+++.++.+ +|||||+|.+.++|.+|++.|++..+ .++
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~--~gr 80 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKI--GSK 80 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEE--TTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEE--CCe
Confidence 3467899999999999999999 99999999999999998754 89999999999999999999999998 578
Q ss_pred cccccccccC
Q 017133 188 PFRLNWATFS 197 (376)
Q Consensus 188 ~~~~~~~~~~ 197 (376)
.+++.++...
T Consensus 81 ~l~V~~a~~~ 90 (96)
T 2dgx_A 81 KILVSLATGA 90 (96)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEEcCCC
Confidence 8999888644
No 269
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.2e-16 Score=116.73 Aligned_cols=79 Identities=28% Similarity=0.500 Sum_probs=70.0
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCC-eeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC-ceecCcceEE
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPS-VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNG-VYCSSRPMRI 283 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~-i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g-~~~~g~~i~v 283 (376)
...++|||+|||.++++++|+++|+ .||. |..+.+. ++|||||+|.+.++|.+|++.||| ..++|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFG-DRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHH-HTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHH-HcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 3567999999999999999999995 9999 6666552 368999999999999999999999 9999999999
Q ss_pred eecCCCCcC
Q 017133 284 DVATPKKAS 292 (376)
Q Consensus 284 ~~~~~~~~~ 292 (376)
.|++++..+
T Consensus 78 ~~a~~~~~~ 86 (93)
T 2cqh_A 78 DYSVSKKLR 86 (93)
T ss_dssp EECCCCCCC
T ss_pred EEccCcccc
Confidence 999887554
No 270
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.67 E-value=5.4e-17 Score=120.81 Aligned_cols=81 Identities=27% Similarity=0.534 Sum_probs=75.2
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
..++|||+|||.++++++|+++|+ .||.|..|.+..++ ++.++|||||+|.+.++|.+|++ ++..++|+.|.|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFA-RYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 457999999999999999999995 99999999999997 89999999999999999999997 999999999999999
Q ss_pred CCCCc
Q 017133 287 TPKKA 291 (376)
Q Consensus 287 ~~~~~ 291 (376)
..+..
T Consensus 84 ~~~~~ 88 (102)
T 2xs2_A 84 IRKQN 88 (102)
T ss_dssp EECC-
T ss_pred CcCcc
Confidence 76643
No 271
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=5.4e-17 Score=117.89 Aligned_cols=79 Identities=24% Similarity=0.456 Sum_probs=72.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccccc
Q 017133 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNWAT 195 (376)
Q Consensus 116 ~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~~~ 195 (376)
++|||+|||+++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.+ |.+|+..|++..+ .++.+++.++.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~--~g~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF--MGRTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC--SSSSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE--CCeEEEEEEcC
Confidence 68999999999999999999999999999999999989999999999999999 9999999999998 56788888876
Q ss_pred cC
Q 017133 196 FS 197 (376)
Q Consensus 196 ~~ 197 (376)
..
T Consensus 79 ~~ 80 (90)
T 2ki2_A 79 PK 80 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 272
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.67 E-value=4.6e-16 Score=118.89 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=70.7
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceecC--cceEE
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGY-GFVRFGDENERSRAMTEMNGVYCSS--RPMRI 283 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Al~~l~g~~~~g--~~i~v 283 (376)
.-..|||+||++.+|+++|+++|+ .||.|.+|++..+ .+|+ |||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs-~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFS-KFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHT-TSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHh-CcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 335788999999999999999996 9999999988764 2577 9999999999999999999999988 99999
Q ss_pred eecCCCCc
Q 017133 284 DVATPKKA 291 (376)
Q Consensus 284 ~~~~~~~~ 291 (376)
.|++++..
T Consensus 101 ~~ak~~~l 108 (130)
T 3zzy_A 101 DFSKLTSL 108 (130)
T ss_dssp EECSCSSC
T ss_pred EecCCCce
Confidence 99988753
No 273
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=9.3e-17 Score=122.64 Aligned_cols=81 Identities=19% Similarity=0.170 Sum_probs=72.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCC---ceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~---v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 187 (376)
.....++|||+|||+++++++|+++|+.||. |.+|+++.++. |+++|||||+|.+.++|.+|++ +++..+ .++
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr 88 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESM--GHR 88 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEE--TTE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeE--CCe
Confidence 3456889999999999999999999999998 89999999986 9999999999999999999998 899888 556
Q ss_pred cccccccc
Q 017133 188 PFRLNWAT 195 (376)
Q Consensus 188 ~~~~~~~~ 195 (376)
.|+|.++.
T Consensus 89 ~i~V~~a~ 96 (118)
T 2db1_A 89 YIEVFKSH 96 (118)
T ss_dssp EEEEEEEC
T ss_pred EEEEEECC
Confidence 77776653
No 274
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=8.4e-16 Score=113.17 Aligned_cols=80 Identities=18% Similarity=0.378 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
....++|||+|||+++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.|++..+.+.++.+++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 456789999999999999999999999999999998764 57999999999999999999999999644888999
Q ss_pred cccccC
Q 017133 192 NWATFS 197 (376)
Q Consensus 192 ~~~~~~ 197 (376)
.++...
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 988754
No 275
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.3e-16 Score=110.67 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=66.0
Q ss_pred CCce-EEECCCCCCCcHHH----HHHHHhhhC-CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 017133 207 SDLS-IFVGDLAPDVTDSI----LQETFSSKY-PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (376)
Q Consensus 207 ~~~~-l~v~nlp~~~t~~~----l~~~F~~~~-g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 280 (376)
++.+ |||+|||+++++++ |+++|+ .| |.|.+| ++ |+|||.|.+.++|.+|++.|+|..+.||+
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~-~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSD-NCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHH-TTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHH-HcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 3445 99999999999988 558996 99 599988 23 89999999999999999999999999999
Q ss_pred eEEeecCCCCcC
Q 017133 281 MRIDVATPKKAS 292 (376)
Q Consensus 281 i~v~~~~~~~~~ 292 (376)
|+|.|++.+.+.
T Consensus 76 i~v~~A~~~sd~ 87 (96)
T 2diu_A 76 IIVSFTPKNREL 87 (96)
T ss_dssp CEEESSCCSCCC
T ss_pred EEEEecCCCcce
Confidence 999999887554
No 276
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=2.2e-16 Score=113.96 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=69.8
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
..++|||+|||+++++++|+++|+ .| .|.++++. +++|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~-~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLK-DY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTC-SS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHh-hC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 457899999999999999999995 99 99999884 56899999999999999999999999999999999999
Q ss_pred CCCC
Q 017133 287 TPKK 290 (376)
Q Consensus 287 ~~~~ 290 (376)
....
T Consensus 76 ~~~~ 79 (88)
T 1wg1_A 76 PTDA 79 (88)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 7653
No 277
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=115.88 Aligned_cols=80 Identities=15% Similarity=0.268 Sum_probs=71.8
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEE-EEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGA-KVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
...++|||+|||+++++++|+++|+ .||.|..+ .++.++.+ +.|||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLV-QYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHH-HHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHH-hcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3467999999999999999999996 99999999 47777553 349999999999999999999999999999999
Q ss_pred ecCCCC
Q 017133 285 VATPKK 290 (376)
Q Consensus 285 ~~~~~~ 290 (376)
|+.++.
T Consensus 88 ~a~~~~ 93 (96)
T 2e44_A 88 YIPDEM 93 (96)
T ss_dssp ECCCCC
T ss_pred EcCccc
Confidence 998873
No 278
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=5.8e-16 Score=122.87 Aligned_cols=85 Identities=16% Similarity=0.287 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
+....+|||+||++.+++++|+++|++||.|.+|++..+. ++|||||+|.+.++|.+|++.|+|..+.+.++.++|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 3456789999999999999999999999999999987542 568999999999999999999999999877799999
Q ss_pred cccccCCCC
Q 017133 192 NWATFSGSD 200 (376)
Q Consensus 192 ~~~~~~~~~ 200 (376)
.|+......
T Consensus 119 ~~Ak~~~l~ 127 (164)
T 1sjr_A 119 DFSKLTSLN 127 (164)
T ss_dssp EECSSSSCC
T ss_pred EEecCCccc
Confidence 998866433
No 279
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=119.42 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=72.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCC---ceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQ---VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~---v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 187 (376)
.....++|||+|||+++++++|+++|+.||. |.+|+++.++. |+++|||||+|.+.++|.+|++ +++..+ .++
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~--~gr 82 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYM--GQR 82 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCS--SSS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCccee--CCe
Confidence 4467889999999999999999999999988 89999999986 9999999999999999999998 899888 556
Q ss_pred cccccccc
Q 017133 188 PFRLNWAT 195 (376)
Q Consensus 188 ~~~~~~~~ 195 (376)
.|++.++.
T Consensus 83 ~i~V~~a~ 90 (107)
T 2lmi_A 83 YVEVYEIN 90 (107)
T ss_dssp CCCCEECC
T ss_pred EEEEEECC
Confidence 77776654
No 280
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.66 E-value=4.7e-16 Score=125.55 Aligned_cols=86 Identities=21% Similarity=0.417 Sum_probs=79.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 143 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL--DGRELR 143 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES--SSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 335678999999999999999999999999999999999988999999999999999999999999999988 668899
Q ss_pred ccccccCC
Q 017133 191 LNWATFSG 198 (376)
Q Consensus 191 ~~~~~~~~ 198 (376)
+.++....
T Consensus 144 v~~a~~~~ 151 (158)
T 2kn4_A 144 VQMARYGR 151 (158)
T ss_dssp EEEECCSS
T ss_pred EEECCCCC
Confidence 99887543
No 281
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=7.1e-16 Score=115.90 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCC---Cc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD---QP 188 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~---~~ 188 (376)
....++|||+|||+++++++|+++|..||.|.+|+++.+ |||||+|.+.++|.+|++.|++..+.+.. +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 356789999999999999999999999999999999886 79999999999999999999999885422 78
Q ss_pred ccccccccCCC
Q 017133 189 FRLNWATFSGS 199 (376)
Q Consensus 189 ~~~~~~~~~~~ 199 (376)
|+|.++.....
T Consensus 85 i~V~~a~~~~~ 95 (108)
T 1x4c_A 85 IRVKVDGPRSP 95 (108)
T ss_dssp EEEEESSCCSC
T ss_pred EEEEeCCCCCC
Confidence 88888876543
No 282
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=119.01 Aligned_cols=78 Identities=19% Similarity=0.256 Sum_probs=68.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
..+.++|||+|||+++++++|+++|+.| .|.+|+|+.++. |+++|||||+|.+.++|.+|+ .+++..+ .++.|+|
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~--~gr~i~V 87 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLM--IQRYVEV 87 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEE--TTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEE
Confidence 3456799999999999999999999999 899999999985 999999999999999999999 6899888 4456666
Q ss_pred ccc
Q 017133 192 NWA 194 (376)
Q Consensus 192 ~~~ 194 (376)
..+
T Consensus 88 ~~a 90 (109)
T 2dnn_A 88 SPA 90 (109)
T ss_dssp EEC
T ss_pred EEC
Confidence 544
No 283
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=9e-16 Score=112.97 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=71.1
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..+.++|||+|| ++++++|+++|+ .||.|..|.+. .++|||||+|.+.++|.+||+.|+|..|.|+.|+|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~-~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFS-PFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHT-TTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHh-hCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 346689999996 899999999995 99999999884 467899999999999999999999999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
|+.++...
T Consensus 83 ~a~~~~~~ 90 (97)
T 1x5p_A 83 IARKQPML 90 (97)
T ss_dssp CCSSCCCC
T ss_pred ECCCCCCC
Confidence 99887544
No 284
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1e-16 Score=121.84 Aligned_cols=81 Identities=20% Similarity=0.380 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||+++++++|+++|..||.|.+|+++.++.++.++|||||+|.+.++|.+|+ .|++..+ .++.|+|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~ 99 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL--LGVPIIVQ 99 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe--CCeEEEEE
Confidence 45689999999999999999999999999999999999989999999999999999999999 9999988 56788887
Q ss_pred cccc
Q 017133 193 WATF 196 (376)
Q Consensus 193 ~~~~ 196 (376)
++..
T Consensus 100 ~a~~ 103 (114)
T 2cq4_A 100 ASQA 103 (114)
T ss_dssp EHHH
T ss_pred ecCC
Confidence 7653
No 285
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.1e-16 Score=119.40 Aligned_cols=86 Identities=9% Similarity=0.183 Sum_probs=76.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH---HHHHhcCCceEEEEeecCCCC---CccceEEEEecCHHHHHHHHHHhcCCcCCC
Q 017133 111 TNDETKTIWIGDLFHWMDETFLH---NCFSHTGQVVNVKVIRNKQTG---QSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~---~~f~~~G~v~~~~~~~~~~~g---~~~g~afV~f~~~~~a~~a~~~l~~~~~~~ 184 (376)
.....++|||+|||+++++++|+ ++|..||.|.+|++++++.++ +++|||||+|.+.++|.+|++.|++..+
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~-- 88 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV-- 88 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE--
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE--
Confidence 44567899999999999999999 999999999999999987654 5669999999999999999999999998
Q ss_pred CCCcccccccccCC
Q 017133 185 TDQPFRLNWATFSG 198 (376)
Q Consensus 185 ~~~~~~~~~~~~~~ 198 (376)
.++.|++.++....
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 57889999887554
No 286
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=111.90 Aligned_cols=69 Identities=22% Similarity=0.339 Sum_probs=63.1
Q ss_pred CceEEEcCCCCCC------CHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCC
Q 017133 115 TKTIWIGDLFHWM------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (376)
Q Consensus 115 ~~~v~v~nLp~~~------~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 185 (376)
+++|||+|||+++ ++++|+++|+.||.|.+++++ +.+|+++|||||+|.+.++|.+|++.|+|..+.++
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 4789999999999 779999999999999999987 35889999999999999999999999999998543
No 287
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-16 Score=122.79 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=72.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|..||.|.++.++.+..+|+++|||||+|.+.++|.+||+ +++..+ .++.|+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~--~gr~i~ 97 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM--GNRFIQ 97 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS--TTSCBE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE--CCcEEE
Confidence 34567899999999999999999999999999987777777799999999999999999999998 999988 566777
Q ss_pred ccccc
Q 017133 191 LNWAT 195 (376)
Q Consensus 191 ~~~~~ 195 (376)
|.++.
T Consensus 98 V~~a~ 102 (124)
T 1wel_A 98 VHPIT 102 (124)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 77654
No 288
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=118.47 Aligned_cols=83 Identities=23% Similarity=0.441 Sum_probs=74.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......++|||+|||+++++++|+++|+.||.|.+|+++.++ +.++|||||+|.+.++|.+|++.|++..+ .++.+
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l 99 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVV--EGRKI 99 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEE--TTEEC
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 355678999999999999999999999999999999999985 45899999999999999999999999998 56788
Q ss_pred ccccccc
Q 017133 190 RLNWATF 196 (376)
Q Consensus 190 ~~~~~~~ 196 (376)
++.++..
T Consensus 100 ~V~~a~~ 106 (109)
T 2err_A 100 EVNNATA 106 (109)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 8888764
No 289
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.65 E-value=7.9e-16 Score=118.33 Aligned_cols=81 Identities=12% Similarity=0.325 Sum_probs=71.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 017133 112 NDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~----~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 187 (376)
..+.++|||+|||+.+++++|+ ++|+.||.|.+|.+.+ +++++|||||+|.+.++|..|++.|+|..+ .++
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l--~gr 100 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPF--QGN 100 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCC--TTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEe--CCC
Confidence 3457899999999999999876 6999999999987753 678999999999999999999999999998 567
Q ss_pred cccccccccC
Q 017133 188 PFRLNWATFS 197 (376)
Q Consensus 188 ~~~~~~~~~~ 197 (376)
+++|.|+...
T Consensus 101 ~l~V~~a~~~ 110 (127)
T 2a3j_A 101 PLVITFSETP 110 (127)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEccCc
Confidence 8999888643
No 290
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=6e-16 Score=113.24 Aligned_cols=79 Identities=20% Similarity=0.358 Sum_probs=69.8
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
..++|||+|||.++++++|+++|+ .||.|.+| +.+..+++ ||||+|.+.++|.+||+ |+|..|+|+.|+|.++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~-~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFL-AFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGG-GTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-hcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 457999999999999999999996 99999987 55555555 99999999999999999 9999999999999998
Q ss_pred CCCCcC
Q 017133 287 TPKKAS 292 (376)
Q Consensus 287 ~~~~~~ 292 (376)
..+...
T Consensus 80 ~~~~~~ 85 (94)
T 2e5g_A 80 EQKEFQ 85 (94)
T ss_dssp CCSCCC
T ss_pred CcCCCC
Confidence 766443
No 291
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-15 Score=111.75 Aligned_cols=79 Identities=15% Similarity=0.244 Sum_probs=69.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|..||.|. +.++.+ +++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 87 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRL--GTDTLR 87 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCS--SSSCCE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 445678999999999999999999999999996 666654 5789999999999999999999999998 567788
Q ss_pred cccccc
Q 017133 191 LNWATF 196 (376)
Q Consensus 191 ~~~~~~ 196 (376)
+.++..
T Consensus 88 V~~a~~ 93 (97)
T 2e5j_A 88 VALARQ 93 (97)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 888764
No 292
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=126.76 Aligned_cols=87 Identities=25% Similarity=0.417 Sum_probs=73.5
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEE-----EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCc
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKV-----IIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i-----~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~ 279 (376)
..++++|||+|||+++|+++|+++|+ .||.|..+.+ ++...++.++|||||+|.+.++|.+||..|||..|.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~-~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFG-RYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHG-GGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34567999999999999999999996 9999887410 11113588999999999999999999999999999999
Q ss_pred ceEEeecCCCCcC
Q 017133 280 PMRIDVATPKKAS 292 (376)
Q Consensus 280 ~i~v~~~~~~~~~ 292 (376)
.|+|.|++....+
T Consensus 121 ~l~V~~a~~~~~~ 133 (143)
T 3egn_A 121 PMVVQFARSARPK 133 (143)
T ss_dssp ECEEEECCCSCC-
T ss_pred EEEEEECCCCCCc
Confidence 9999999876544
No 293
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3e-16 Score=117.15 Aligned_cols=78 Identities=22% Similarity=0.305 Sum_probs=69.4
Q ss_pred CCCCceEEE--CCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee-----c
Q 017133 205 ACSDLSIFV--GDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC-----S 277 (376)
Q Consensus 205 ~~~~~~l~v--~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~-----~ 277 (376)
..++++||| +||++++++++|+++|+ .||.|.+|.+.. .+|||||+|.+.++|.+|++.|||+.+ .
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~-~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLE-KCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHH-HHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHH-hcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 345778999 77999999999999996 999999988753 268999999999999999999999998 6
Q ss_pred CcceEEeecCCC
Q 017133 278 SRPMRIDVATPK 289 (376)
Q Consensus 278 g~~i~v~~~~~~ 289 (376)
|++|.|.|+...
T Consensus 95 g~~l~v~~a~~~ 106 (114)
T 2cq2_A 95 KITLYLNFVEKV 106 (114)
T ss_dssp EEECEEEEESCC
T ss_pred CcEEEEEecccC
Confidence 899999999754
No 294
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.3e-16 Score=115.66 Aligned_cols=83 Identities=31% Similarity=0.427 Sum_probs=73.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|..||.| +++.+ .+++++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 84 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREI--EGRAIR 84 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEe--CCeEEE
Confidence 45678999999999999999999999999976 56666 5899999999999999999999999999988 578899
Q ss_pred ccccccCCC
Q 017133 191 LNWATFSGS 199 (376)
Q Consensus 191 ~~~~~~~~~ 199 (376)
+.++.....
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 988875543
No 295
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-16 Score=118.27 Aligned_cols=82 Identities=20% Similarity=0.244 Sum_probs=73.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
....++|||+|||+++++++|+++|..||.|.. .++.+..+|+++|||||+|.+.++|.+|++ |++..+ .++.+++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~--~g~~l~V 89 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV--FGNEIKL 89 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB--TTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE--CCcEEEE
Confidence 346789999999999999999999999999888 677777789999999999999999999998 999998 5788888
Q ss_pred cccccC
Q 017133 192 NWATFS 197 (376)
Q Consensus 192 ~~~~~~ 197 (376)
.++...
T Consensus 90 ~~a~~~ 95 (101)
T 1fj7_A 90 EKPKGR 95 (101)
T ss_dssp ECCSCC
T ss_pred EEcCCC
Confidence 887643
No 296
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.7e-16 Score=114.54 Aligned_cols=85 Identities=25% Similarity=0.496 Sum_probs=75.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......++|||+|||+++++++|+++|+.| ..++++.++.++.++|||||+|.+.++|.+|++.|++..+ .++.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 84 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI--DGNKV 84 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE--CCeEE
Confidence 345678999999999999999999999976 4788899988999999999999999999999999999998 56788
Q ss_pred cccccccCCC
Q 017133 190 RLNWATFSGS 199 (376)
Q Consensus 190 ~~~~~~~~~~ 199 (376)
+|.++.....
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 2fc8_A 85 TLDWAKPKGE 94 (102)
T ss_dssp EEEECCCCCS
T ss_pred EEEEecCCCC
Confidence 9988875443
No 297
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=2.2e-16 Score=110.42 Aligned_cols=74 Identities=16% Similarity=0.307 Sum_probs=66.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 117 TIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 117 ~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
+|||+|||+++++++|+++|+.||.|.++.++.++.+|.++|||||+|.+.++|.+|++. ++..+ .++.+++.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV--GLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB--TTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE--CCEEEEEEE
Confidence 599999999999999999999999999999999998999999999999999999999974 77777 455565554
No 298
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=1.4e-15 Score=112.90 Aligned_cols=83 Identities=14% Similarity=0.231 Sum_probs=73.0
Q ss_pred CCCceEEECCCCC-----CCcHHHHHHHHhhhCCCeeEEEEEecCCC-CCcceEEEEEeCCHHHHHHHHHHhCCceecCc
Q 017133 206 CSDLSIFVGDLAP-----DVTDSILQETFSSKYPSVKGAKVIIDSNT-GRTKGYGFVRFGDENERSRAMTEMNGVYCSSR 279 (376)
Q Consensus 206 ~~~~~l~v~nlp~-----~~t~~~l~~~F~~~~g~i~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~ 279 (376)
.++++|+|.||.. +-+++||+++|+ +||.|.+|.|.+++.+ ++++|+|||+|.+.++|.+|++.|||+.+.||
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~-~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGG-GGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHH-hcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4678999999952 236899999996 9999999999998653 68899999999999999999999999999999
Q ss_pred ceEEeecCCC
Q 017133 280 PMRIDVATPK 289 (376)
Q Consensus 280 ~i~v~~~~~~ 289 (376)
.|+|.|+...
T Consensus 85 ~i~v~~a~~~ 94 (105)
T 2pe8_A 85 VVKACFYNLD 94 (105)
T ss_dssp ECEEEECCHH
T ss_pred EEEEEEcCHH
Confidence 9999999753
No 299
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=5.6e-16 Score=119.67 Aligned_cols=81 Identities=15% Similarity=0.393 Sum_probs=75.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
..++|||+|||+++++++|+++|+.||.|.+|+++.++.+|.++|||||+|.+.++|.+|+ .|++..+ .++.++|.+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~--~g~~l~V~~ 111 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF--RGRTIKVLP 111 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE--TTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE--CCeEEEEEE
Confidence 4689999999999999999999999999999999999889999999999999999999999 8999998 567888888
Q ss_pred cccC
Q 017133 194 ATFS 197 (376)
Q Consensus 194 ~~~~ 197 (376)
+...
T Consensus 112 a~~~ 115 (124)
T 2jwn_A 112 KRTN 115 (124)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7643
No 300
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=3.3e-15 Score=113.77 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=67.9
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceE-EEEEeCCHHHHHHHHHHhCCceecC--cceEEee
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGY-GFVRFGDENERSRAMTEMNGVYCSS--RPMRIDV 285 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~Al~~l~g~~~~g--~~i~v~~ 285 (376)
..|||+||++.+++++|+++|+ .||.|.+|++... .|+ |||+|.+.++|..|++.|||..|.| +.|+|.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs-~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCN-PVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHT-TTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEcCcCCCCCHHHHHHHHH-hcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 4578999999999999999996 9999999998652 275 9999999999999999999999987 6899999
Q ss_pred cCCCCc
Q 017133 286 ATPKKA 291 (376)
Q Consensus 286 ~~~~~~ 291 (376)
++++..
T Consensus 99 Ak~~~l 104 (124)
T 2e5i_A 99 ARPTRL 104 (124)
T ss_dssp CSCSCC
T ss_pred ecCCcc
Confidence 988753
No 301
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.6e-16 Score=118.63 Aligned_cols=84 Identities=21% Similarity=0.376 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||+++++++|+++|..||.|.+|+++.++.++.++|||||+|.+.++|.+|++. ++..+ .++.|++.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~--~g~~l~V~ 101 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI--DGRVVEPK 101 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE--CCEEEEEE
Confidence 4568999999999999999999999999999999999998999999999999999999999987 88888 66888888
Q ss_pred ccccCCC
Q 017133 193 WATFSGS 199 (376)
Q Consensus 193 ~~~~~~~ 199 (376)
++.....
T Consensus 102 ~a~~~~~ 108 (116)
T 1x4b_A 102 RAVAREE 108 (116)
T ss_dssp CCSSCCC
T ss_pred ECCCCcc
Confidence 8775543
No 302
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2e-15 Score=109.46 Aligned_cols=78 Identities=19% Similarity=0.348 Sum_probs=70.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
....++|||+|||+++++++|+++|+.||.|.+|+++ +|||||+|.+.++|.+|++.|++..+ .++.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~v 74 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKL--HGVNINV 74 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBC--SSCBCEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCcc--CCcEEEE
Confidence 4578999999999999999999999999999999987 47999999999999999999999888 5678888
Q ss_pred cccccCCC
Q 017133 192 NWATFSGS 199 (376)
Q Consensus 192 ~~~~~~~~ 199 (376)
.++.....
T Consensus 75 ~~a~~~~~ 82 (90)
T 2dnq_A 75 EASKNKSK 82 (90)
T ss_dssp ECSSCCCC
T ss_pred EECCCCCC
Confidence 88875543
No 303
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=3.8e-16 Score=133.34 Aligned_cols=80 Identities=21% Similarity=0.404 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcC--CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTG--QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G--~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
..++|||+|||+++++++|+++|+.|| .|++|+|++++.+|+++|||||+|.+.++|.+||+.|++..| .++.|+|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~--~Gr~l~V 144 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL--HGQNPVV 144 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB--TTBCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE--CCEEeEE
Confidence 577999999999999999999999999 999999999999999999999999999999999999999998 5677777
Q ss_pred cccc
Q 017133 192 NWAT 195 (376)
Q Consensus 192 ~~~~ 195 (376)
.++.
T Consensus 145 ~~a~ 148 (229)
T 3q2s_C 145 TPVN 148 (229)
T ss_dssp EECC
T ss_pred EECC
Confidence 7654
No 304
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=112.63 Aligned_cols=80 Identities=20% Similarity=0.356 Sum_probs=71.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......++|||+|||+++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.|++..+ .++.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~--~g~~l 81 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL--RGKQL 81 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB--TTBCC
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe--CCceE
Confidence 34567889999999999999999999999999999999865 58999999999999999999999998 56888
Q ss_pred cccccccC
Q 017133 190 RLNWATFS 197 (376)
Q Consensus 190 ~~~~~~~~ 197 (376)
++.++...
T Consensus 82 ~v~~a~~~ 89 (99)
T 2cpj_A 82 RVRFACHS 89 (99)
T ss_dssp EEEESSCC
T ss_pred EEEEcCCC
Confidence 88887643
No 305
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.63 E-value=1e-15 Score=124.33 Aligned_cols=86 Identities=20% Similarity=0.414 Sum_probs=77.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
....++|||+|||+.+++++|+.+|..||.|..|.++.++.+|.++|||||+|.+.++|.+||..|++..+ .++.|+|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V 146 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI--MGQTIQV 146 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE--CCEEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999999988 6688888
Q ss_pred cccccCCC
Q 017133 192 NWATFSGS 199 (376)
Q Consensus 192 ~~~~~~~~ 199 (376)
.|+.....
T Consensus 147 ~~a~~~~~ 154 (165)
T 1rk8_A 147 DWCFVKGP 154 (165)
T ss_dssp EESEECC-
T ss_pred EEecCCCC
Confidence 88875543
No 306
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=5.4e-16 Score=118.67 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=69.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCce--EEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVV--NVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~--~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 188 (376)
.....++|||+|||+++++++|+++|+.| .|+ +|+|+.|+. |+++|||||+|.+.++|.+|++. ++..+ .++.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l--~gR~ 112 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERI--GHRY 112 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCB--TTBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEE--CCEE
Confidence 33567889999999999999999999999 677 999999986 99999999999999999999975 66777 5567
Q ss_pred ccccccc
Q 017133 189 FRLNWAT 195 (376)
Q Consensus 189 ~~~~~~~ 195 (376)
|+|..+.
T Consensus 113 I~V~~a~ 119 (126)
T 2hgm_A 113 IEVFKSS 119 (126)
T ss_dssp CCCEEEC
T ss_pred EEEEECC
Confidence 7776654
No 307
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=2.5e-16 Score=122.95 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=70.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.|| |++|+|+.++. |+++|||||+|.+.++|++|| .+++..+ .++.|+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l--~gR~i~ 116 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANM--QHRYIE 116 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSS--SSCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEE--CCEEEE
Confidence 345678999999999999999999999999 67999999985 999999999999999999999 7899888 456777
Q ss_pred ccccccC
Q 017133 191 LNWATFS 197 (376)
Q Consensus 191 ~~~~~~~ 197 (376)
|..+...
T Consensus 117 V~~a~~~ 123 (139)
T 2hgn_A 117 LFLNSTT 123 (139)
T ss_dssp CEECCCS
T ss_pred EEECCCC
Confidence 7766543
No 308
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.63 E-value=5.1e-16 Score=116.00 Aligned_cols=80 Identities=25% Similarity=0.374 Sum_probs=71.7
Q ss_pred CCCCceEEEcCCCCCC------CHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCC
Q 017133 112 NDETKTIWIGDLFHWM------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~------~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 185 (376)
....++|||+|||+.+ ++++|+++|+.||.|.+|+++ +.+|+++|||||+|.+.++|.+|+..|+|..+ .
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~--~ 87 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL--D 87 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--S
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc--C
Confidence 3457899999999999 789999999999999999988 35899999999999999999999999999998 4
Q ss_pred CC-cccccccc
Q 017133 186 DQ-PFRLNWAT 195 (376)
Q Consensus 186 ~~-~~~~~~~~ 195 (376)
++ .+++.++.
T Consensus 88 g~~~l~V~~a~ 98 (105)
T 2nlw_A 88 KQHTFRVNLFT 98 (105)
T ss_dssp TTCEEEEECSC
T ss_pred CCceEEEEEcc
Confidence 56 78888775
No 309
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.63 E-value=4.5e-16 Score=116.64 Aligned_cols=80 Identities=13% Similarity=0.044 Sum_probs=70.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcC-CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
.+...++|||+|||+++++++|+++|+.|| .|..+.+..+ .++|||||+|.+.++|++|++.|++..+ .++.|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l--~Gr~i 97 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEF--RGSVI 97 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEE--TTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEE
Confidence 345678999999999999999999999999 8999988542 4789999999999999999999999998 66788
Q ss_pred ccccccc
Q 017133 190 RLNWATF 196 (376)
Q Consensus 190 ~~~~~~~ 196 (376)
++.++..
T Consensus 98 ~V~~a~~ 104 (111)
T 2jvr_A 98 TVERDDN 104 (111)
T ss_dssp EEEESCC
T ss_pred EEEECCC
Confidence 8888764
No 310
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=1.1e-15 Score=114.11 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=69.2
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 112 NDETKTIWIGDLFHW-MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
..+.++|||+|||++ +++++|+++|++||.|.+|+++++ +|||||+|.+.++|..|++.|++......++.|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456889999999998 999999999999999999999753 5899999999999999999987654333778899
Q ss_pred ccccccC
Q 017133 191 LNWATFS 197 (376)
Q Consensus 191 ~~~~~~~ 197 (376)
|.++...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9888643
No 311
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=1.4e-15 Score=109.79 Aligned_cols=77 Identities=25% Similarity=0.373 Sum_probs=62.5
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce--ecCcceE
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY--CSSRPMR 282 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~--~~g~~i~ 282 (376)
..+.++|||+|||+++|+++|+++|+ .||.|.+|+++++ ++|||||+|.+.++|.+ |++.. +.|+.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~-~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFC-QYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHh-ccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 34567999999999999999999996 9999999998864 68999999999999983 46655 4599999
Q ss_pred EeecCCCCc
Q 017133 283 IDVATPKKA 291 (376)
Q Consensus 283 v~~~~~~~~ 291 (376)
|.++.++..
T Consensus 78 v~~a~~k~~ 86 (89)
T 3d2w_A 78 ISNAEPKHN 86 (89)
T ss_dssp EEECC----
T ss_pred EEEcCCCCc
Confidence 999987654
No 312
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.62 E-value=1.3e-15 Score=114.15 Aligned_cols=78 Identities=21% Similarity=0.403 Sum_probs=69.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 110 FTNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 110 ~~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
......++|||+|||+++++++|+++|+.||.|.+|.++ +|||||+|.+.++|.+|++.|++..+ .++.+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l 95 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSF--ANQPL 95 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEE--TTEEC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCeEE
Confidence 345678999999999999999999999999999999988 58999999999999999999999998 67888
Q ss_pred cccccccC
Q 017133 190 RLNWATFS 197 (376)
Q Consensus 190 ~~~~~~~~ 197 (376)
++.++...
T Consensus 96 ~V~~a~~~ 103 (108)
T 2jvo_A 96 EVVYSKLP 103 (108)
T ss_dssp EEESCSCC
T ss_pred EEEEecCC
Confidence 88887654
No 313
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=8.5e-16 Score=116.73 Aligned_cols=75 Identities=24% Similarity=0.341 Sum_probs=65.8
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc-----e
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP-----M 281 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~-----i 281 (376)
..++|||+|||+++++++|+++|+ .||.|..|.|+.+ |||||+|.+.++|.+||+.|||..|.|+. |
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHG-GGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 457999999999999999999995 9999999998765 79999999999999999999999999998 6
Q ss_pred EEeecCCC
Q 017133 282 RIDVATPK 289 (376)
Q Consensus 282 ~v~~~~~~ 289 (376)
+|....+.
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 66666554
No 314
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=108.13 Aligned_cols=76 Identities=22% Similarity=0.463 Sum_probs=68.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHh-cCCcCCCCCCcc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSY-SGSLMPNTDQPF 189 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l-~~~~~~~~~~~~ 189 (376)
.....++|||+|||+++++++|+++|+.||.|.+++++++ +|||||+|.+.++|.+|++.| ++..+ .++.+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~--~g~~l 79 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIV--NGRRL 79 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEE--TTEEC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeE--CCCEE
Confidence 4466789999999999999999999999999999999874 589999999999999999988 88888 45778
Q ss_pred ccccc
Q 017133 190 RLNWA 194 (376)
Q Consensus 190 ~~~~~ 194 (376)
++.|+
T Consensus 80 ~v~~a 84 (85)
T 2ytc_A 80 NVKWG 84 (85)
T ss_dssp CEEEC
T ss_pred EEEec
Confidence 88775
No 315
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.9e-15 Score=112.10 Aligned_cols=75 Identities=19% Similarity=0.386 Sum_probs=68.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||+++++++|+++|+.||.|.++++. +++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 96 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPF--QGRNLRTG 96 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEE--TTEECCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEEEE
Confidence 456899999999999999999999999999999987 3468999999999999999999999998 56788888
Q ss_pred ccc
Q 017133 193 WAT 195 (376)
Q Consensus 193 ~~~ 195 (376)
|+.
T Consensus 97 ~a~ 99 (101)
T 2la4_A 97 WGK 99 (101)
T ss_dssp BCC
T ss_pred ecc
Confidence 875
No 316
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.1e-16 Score=117.79 Aligned_cols=86 Identities=15% Similarity=0.219 Sum_probs=72.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
....++|||+|||+++++++|+++|..||.|.++.+..+..++.++|||||+|.+.++|.+|++.|++..+ .++.+++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL--YGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC--SSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe--CCcEEEE
Confidence 45678999999999999999999999999984433322223788999999999999999999999999988 6788999
Q ss_pred cccccCCC
Q 017133 192 NWATFSGS 199 (376)
Q Consensus 192 ~~~~~~~~ 199 (376)
.++.....
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpx_A 100 EFGKNKKQ 107 (115)
T ss_dssp EECCCCSC
T ss_pred EEccCCCC
Confidence 88875543
No 317
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.61 E-value=3.4e-15 Score=111.16 Aligned_cols=79 Identities=22% Similarity=0.416 Sum_probs=70.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|..||.|.+|++++ +||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 76 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDL--EGENIE 76 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCcc--CCCEEE
Confidence 345679999999999999999999999999999998873 5999999999999999999999988 567888
Q ss_pred ccccccCCC
Q 017133 191 LNWATFSGS 199 (376)
Q Consensus 191 ~~~~~~~~~ 199 (376)
+.++.....
T Consensus 77 v~~a~~~~~ 85 (103)
T 2dgu_A 77 IVFAKPPDQ 85 (103)
T ss_dssp EEECCCCCC
T ss_pred EEEcCCCcc
Confidence 888875543
No 318
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=7.5e-16 Score=117.67 Aligned_cols=78 Identities=14% Similarity=0.191 Sum_probs=67.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCc----eEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQV----VNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v----~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 188 (376)
...++|||+|||+++++++|+++|+.||.| .+|+|+.+. +|+++|||||+|.+.++|.+|++. ++..+ .++.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l--~gR~ 96 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLL--GKRY 96 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEES--SSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCee--CCeE
Confidence 567899999999999999999999999975 689999985 899999999999999999999975 88777 3455
Q ss_pred cccccc
Q 017133 189 FRLNWA 194 (376)
Q Consensus 189 ~~~~~~ 194 (376)
|++..+
T Consensus 97 i~V~~a 102 (123)
T 2dha_A 97 IELFRS 102 (123)
T ss_dssp ECCEEE
T ss_pred EEEEEC
Confidence 665443
No 319
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=1.2e-14 Score=119.01 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=76.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|++|.++.++ ++.++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l--~Gr~l~ 160 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPL--DGRPMD 160 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBC--SSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEE--CCEEEE
Confidence 34567899999999999999999999999999999999998 899999999999999999999999999988 567888
Q ss_pred cccccc
Q 017133 191 LNWATF 196 (376)
Q Consensus 191 ~~~~~~ 196 (376)
|.++..
T Consensus 161 V~~a~~ 166 (177)
T 2f3j_A 161 IQLVAS 166 (177)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 888764
No 320
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.4e-15 Score=112.40 Aligned_cols=80 Identities=21% Similarity=0.480 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
....++|||+|||+++++++|+++|+.||.|.+|+++.+ +|||||+|.+.++|.+|++.|++..+ .++.+++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v 93 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTI--EGHVVKC 93 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEE--TTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEE--CCcEEEE
Confidence 356789999999999999999999999999999999886 58999999999999999999999988 5688899
Q ss_pred cccccCCC
Q 017133 192 NWATFSGS 199 (376)
Q Consensus 192 ~~~~~~~~ 199 (376)
.|+.....
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4g_A 94 YWGKESPD 101 (109)
T ss_dssp ECCCCCCS
T ss_pred EecCCCCC
Confidence 88876543
No 321
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=5.3e-15 Score=112.59 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccce-EEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGY-GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
.....|||+||++.+++++|+++|++||.|.+|+++.. .|| |||+|.+.++|..|++.|+|..+.+..+.++|
T Consensus 23 s~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 23 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred CcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 34456789999999999999999999999999998752 276 99999999999999999999999877789999
Q ss_pred cccccCC
Q 017133 192 NWATFSG 198 (376)
Q Consensus 192 ~~~~~~~ 198 (376)
.++....
T Consensus 97 ~~Ak~~~ 103 (124)
T 2e5i_A 97 EYARPTR 103 (124)
T ss_dssp ECCSCSC
T ss_pred EEecCCc
Confidence 9987654
No 322
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.60 E-value=1.8e-15 Score=115.64 Aligned_cols=85 Identities=16% Similarity=0.323 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccce-EEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGY-GFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~-afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
.....|||+||++.+++++|+++|++||.|.+|+++.+. +|| |||+|.+.++|..|++.|+|..+.+.++.+++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI 100 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 100 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEE
Confidence 456788999999999999999999999999999988643 577 99999999999999999999999777789999
Q ss_pred cccccCCCCCc
Q 017133 192 NWATFSGSDRR 202 (376)
Q Consensus 192 ~~~~~~~~~~~ 202 (376)
.|++.....-+
T Consensus 101 ~~ak~~~l~v~ 111 (130)
T 3zzy_A 101 DFSKLTSLNVK 111 (130)
T ss_dssp EECSCSSCCCC
T ss_pred EecCCCceeEE
Confidence 99986644333
No 323
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=114.82 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=67.3
Q ss_pred CCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCC---CCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 206 CSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNT---GRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 206 ~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
...++|||+|||+++++++|+++|+ .||.|. +.++.+..+ |+++|||||+|.+.++|.+||+.|+ .++|+.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~-~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFR-RFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTT-TTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHH-hcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 3567999999999999999999995 999999 888888776 7999999999999999999999983 36666666
Q ss_pred EeecCC
Q 017133 283 IDVATP 288 (376)
Q Consensus 283 v~~~~~ 288 (376)
+..+..
T Consensus 82 ~~~~~~ 87 (114)
T 2dnl_A 82 CVSSPT 87 (114)
T ss_dssp EECCSS
T ss_pred eccCCC
Confidence 665443
No 324
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=4.2e-15 Score=123.49 Aligned_cols=121 Identities=12% Similarity=0.034 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHh--cCCcCCCCCCcccccccccCCCCCc--cCCCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEE
Q 017133 166 SRAAAEKVLQSY--SGSLMPNTDQPFRLNWATFSGSDRR--TEACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKV 241 (376)
Q Consensus 166 ~~~~a~~a~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i 241 (376)
+.+.+..|++.. ....+...+..++.....+.+.... ......++|||+|||.++++++|+++|+ .||.|..|++
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~v~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLE-DKGQVLNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHT-TSCCEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHh-cCCCEEEEEE
Confidence 667778888765 2333333333333221111000000 0122357999999999999999999996 9999999999
Q ss_pred EecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 017133 242 IIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (376)
Q Consensus 242 ~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 289 (376)
.++. ++.++|||||+|.+.++|.+|+..+ +..++|+.|+|.+.+.-
T Consensus 142 ~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 142 RRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp EECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred EECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 9985 4899999999999999999999765 45899999999998764
No 325
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=109.39 Aligned_cols=81 Identities=14% Similarity=0.207 Sum_probs=70.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEE-EEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNV-KVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~-~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
.....++|||+|||+++++++|+++|..||.|.+| .++.++.++ .|||+|.+.++|.+|++.|++..+ .++.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l 84 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQL--ENFTL 84 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBC--SSCBC
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEE--CCcEE
Confidence 34557899999999999999999999999999999 488876553 399999999999999999999998 57888
Q ss_pred cccccccC
Q 017133 190 RLNWATFS 197 (376)
Q Consensus 190 ~~~~~~~~ 197 (376)
++.++...
T Consensus 85 ~V~~a~~~ 92 (96)
T 2e44_A 85 KVAYIPDE 92 (96)
T ss_dssp EEEECCCC
T ss_pred EEEEcCcc
Confidence 88887644
No 326
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=2.4e-15 Score=108.39 Aligned_cols=71 Identities=21% Similarity=0.471 Sum_probs=65.4
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhC----C-------CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKY----P-------SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~----g-------~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~ 275 (376)
..++|||+|||.++++++|+++|+ .| | .|.++.+.++ +|||||+|.+.++|.+|+ .|||..
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~-~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFN-AQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHH-HHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHH-HHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 567999999999999999999995 89 8 8999988754 689999999999999999 999999
Q ss_pred ecCcceEEee
Q 017133 276 CSSRPMRIDV 285 (376)
Q Consensus 276 ~~g~~i~v~~ 285 (376)
+.|+.|+|++
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999975
No 327
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=4.3e-15 Score=113.64 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=70.5
Q ss_pred CCCCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 205 ACSDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
..+.++|||+|| ++++++|+++|+ .||.|.+|.+. .++|||||+|.+.++|.+|++.|+|..|.|+.|+|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~-~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFS-PFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHS-TTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHH-ccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 346789999996 699999999995 99999999885 467899999999999999999999999999999999
Q ss_pred ecCCCCcC
Q 017133 285 VATPKKAS 292 (376)
Q Consensus 285 ~~~~~~~~ 292 (376)
|+.++...
T Consensus 107 ~a~~~~~~ 114 (121)
T 2bz2_A 107 IARKQPML 114 (121)
T ss_dssp ECCSSCC-
T ss_pred EeCCCCCC
Confidence 99876443
No 328
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=5e-15 Score=108.72 Aligned_cols=78 Identities=15% Similarity=0.315 Sum_probs=68.0
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
...+.++|||+|||+ ++++++|+++|+.||.|.+|.+. +|||||+|.+.++|.+|++.|++..+ .++.+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l 75 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMN--FGKKL 75 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSC--BTTTB
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCee--CCcEE
Confidence 346789999999998 99999999999999999999884 58999999999999999999999998 46788
Q ss_pred cccccccCC
Q 017133 190 RLNWATFSG 198 (376)
Q Consensus 190 ~~~~~~~~~ 198 (376)
++.++....
T Consensus 76 ~V~~a~~~~ 84 (96)
T 2kvi_A 76 ILEVSSSNA 84 (96)
T ss_dssp CEEEEECCC
T ss_pred EEEEcCcCC
Confidence 888876543
No 329
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=8.8e-17 Score=122.63 Aligned_cols=86 Identities=19% Similarity=0.383 Sum_probs=77.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceE--------EEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCC
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVN--------VKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~--------~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 183 (376)
..+.++|||+|||+++++++|+++|+.||.|.+ |+++.++.+++++|||||+|.+.++|.+|++.|++..+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 82 (116)
Confidence 356789999999999999999999999999999 99999988999999999999999999999999999988
Q ss_pred CCCCcccccccccCCC
Q 017133 184 NTDQPFRLNWATFSGS 199 (376)
Q Consensus 184 ~~~~~~~~~~~~~~~~ 199 (376)
.++.+++.++.....
T Consensus 83 -~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 -SGNPIKVSFATRRAD 97 (116)
Confidence 567888888775543
No 330
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.59 E-value=5.1e-15 Score=108.74 Aligned_cols=76 Identities=16% Similarity=0.327 Sum_probs=67.9
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcc
Q 017133 111 TNDETKTIWIGDLFH-WMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPF 189 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~-~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~ 189 (376)
.....++|||+|||+ ++++++|+++|+.||.|.++++. +|||||+|.+.++|.+|++.|++..+ .++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l 87 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMN--FGKKL 87 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEE--TTEEC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEE--CCEEE
Confidence 446789999999998 99999999999999999999883 58999999999999999999999988 56788
Q ss_pred ccccccc
Q 017133 190 RLNWATF 196 (376)
Q Consensus 190 ~~~~~~~ 196 (376)
++.++..
T Consensus 88 ~V~~a~~ 94 (97)
T 2xnq_A 88 ILEVSSS 94 (97)
T ss_dssp EEEECCC
T ss_pred EEEecCC
Confidence 8887753
No 331
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-14 Score=107.44 Aligned_cols=79 Identities=24% Similarity=0.444 Sum_probs=69.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhc--CCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHT--GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQP 188 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~--G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~ 188 (376)
.....++|||+|||+++++++|+++|+.| |.|.++++. +|||||+|.+.++|.+|++.|++..+ .++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~ 80 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVL--DGSP 80 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEE--TTEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEe--CCcE
Confidence 44568899999999999999999999999 899988764 46999999999999999999999998 5688
Q ss_pred ccccccccCCC
Q 017133 189 FRLNWATFSGS 199 (376)
Q Consensus 189 ~~~~~~~~~~~ 199 (376)
|++.++.....
T Consensus 81 l~v~~a~~~~~ 91 (99)
T 2cpd_A 81 IEVTLAKPVDK 91 (99)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCCC
Confidence 99988875543
No 332
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.59 E-value=1.4e-15 Score=111.99 Aligned_cols=82 Identities=28% Similarity=0.436 Sum_probs=72.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCC
Q 017133 111 TNDETKTIWIGDLFHWMDETFLH----NCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~----~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~ 186 (376)
...+.++|||+|||+++++++|+ ++|+.||.|.+|.+.+ +|.++|||||+|.+.++|..|++.|++..+ .+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~--~g 78 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF--YD 78 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEE--TT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE--CC
Confidence 34568999999999999999999 9999999999998874 577889999999999999999999999988 56
Q ss_pred CcccccccccC
Q 017133 187 QPFRLNWATFS 197 (376)
Q Consensus 187 ~~~~~~~~~~~ 197 (376)
+.+++.++...
T Consensus 79 ~~l~v~~a~~~ 89 (97)
T 1nu4_A 79 KPMRIQYAKTD 89 (97)
T ss_dssp EECEEEECSSC
T ss_pred cEEEEEEccCC
Confidence 88888887654
No 333
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.3e-15 Score=113.93 Aligned_cols=76 Identities=12% Similarity=0.164 Sum_probs=65.4
Q ss_pred ceEEEcCC----CCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecC----HHH----HHHHHH--HhcCCc
Q 017133 116 KTIWIGDL----FHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYS----RAA----AEKVLQ--SYSGSL 181 (376)
Q Consensus 116 ~~v~v~nL----p~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~----~~~----a~~a~~--~l~~~~ 181 (376)
..|||+|| |+.+++.+|+++|+.||.|.+|.++.|+.||+++|||||+|.+ +++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 788888 678888
Q ss_pred CCCCCCcccccc
Q 017133 182 MPNTDQPFRLNW 193 (376)
Q Consensus 182 ~~~~~~~~~~~~ 193 (376)
+ .++.++|..
T Consensus 83 I--~Gr~irV~l 92 (136)
T 2j8a_A 83 I--MGFKFEVIL 92 (136)
T ss_dssp E--TTEEEEEEE
T ss_pred e--cCcEEEEEE
Confidence 8 445555543
No 334
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=7e-15 Score=107.04 Aligned_cols=78 Identities=13% Similarity=0.282 Sum_probs=70.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.+|++++ +||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 75 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEF--QGKRMH 75 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEE--TTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCee--CCcEEE
Confidence 446789999999999999999999999999999999874 3999999999999999999999998 568888
Q ss_pred ccccccCC
Q 017133 191 LNWATFSG 198 (376)
Q Consensus 191 ~~~~~~~~ 198 (376)
+.++....
T Consensus 76 V~~a~~~~ 83 (92)
T 2dgt_A 76 VQLSTSRL 83 (92)
T ss_dssp EEESSCCC
T ss_pred EEEccCCC
Confidence 88886543
No 335
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=9.4e-15 Score=105.89 Aligned_cols=78 Identities=19% Similarity=0.368 Sum_probs=69.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|+.||.|.++++++ +||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 74 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEV--KGKRIN 74 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEE--TTEECE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEE--CCcEEE
Confidence 346789999999999999999999999999999999874 3999999999999999999999988 568888
Q ss_pred ccccccCC
Q 017133 191 LNWATFSG 198 (376)
Q Consensus 191 ~~~~~~~~ 198 (376)
+.++....
T Consensus 75 v~~a~~~~ 82 (90)
T 2dnp_A 75 VELSTKGQ 82 (90)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 88887543
No 336
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.58 E-value=1e-15 Score=113.78 Aligned_cols=79 Identities=33% Similarity=0.545 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||+++++++|+++|+.||.|.+|+++.++ +|.++|||||+|.+.++|.+|++ ++..+ .++.+.+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~--~g~~l~v~ 81 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINF--HGKKLKLG 81 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEE--TTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeE--CCEEEEEE
Confidence 457899999999999999999999999999999999998 99999999999999999999998 66666 45666666
Q ss_pred cccc
Q 017133 193 WATF 196 (376)
Q Consensus 193 ~~~~ 196 (376)
++..
T Consensus 82 ~a~~ 85 (102)
T 2xs2_A 82 PAIR 85 (102)
T ss_dssp EEEE
T ss_pred ECCc
Confidence 6553
No 337
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.58 E-value=1e-14 Score=110.00 Aligned_cols=76 Identities=22% Similarity=0.408 Sum_probs=68.3
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 112 NDETKTIWIGDLFHW-MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
....++|||+|||++ +++++|+++|..||.|.+|++ ++|||||+|.+.++|.+|++.|++..+ .++.|+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~--~g~~l~ 93 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVL--AGQTLD 93 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEE--TTEECC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEE--CCeEEE
Confidence 345689999999999 999999999999999999988 458999999999999999999999998 567888
Q ss_pred ccccccC
Q 017133 191 LNWATFS 197 (376)
Q Consensus 191 ~~~~~~~ 197 (376)
+.++...
T Consensus 94 V~~a~~~ 100 (110)
T 1wf1_A 94 INMAGEP 100 (110)
T ss_dssp EEESCCC
T ss_pred EEECCCC
Confidence 8887643
No 338
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=105.55 Aligned_cols=77 Identities=21% Similarity=0.296 Sum_probs=66.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||+++++++|+++|..||.|.+| +.++.+++ ||||+|.+.++|.+|++ |++..+ .++.+++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~--~g~~l~V~ 77 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL--GGHRLRVR 77 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE--TTEECCCB
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE--CCEEEEEE
Confidence 457899999999999999999999999999987 56665655 99999999999999999 999998 56777887
Q ss_pred ccccC
Q 017133 193 WATFS 197 (376)
Q Consensus 193 ~~~~~ 197 (376)
++...
T Consensus 78 ~a~~~ 82 (94)
T 2e5g_A 78 PREQK 82 (94)
T ss_dssp CSCCS
T ss_pred ECCcC
Confidence 76543
No 339
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.57 E-value=3e-15 Score=107.99 Aligned_cols=77 Identities=18% Similarity=0.266 Sum_probs=64.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+ +++..+.+.++.++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~ 77 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVH 77 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEE
Confidence 3456889999999999999999999999999999999874 67999999999999983 56666666788888
Q ss_pred cccccc
Q 017133 191 LNWATF 196 (376)
Q Consensus 191 ~~~~~~ 196 (376)
+.++..
T Consensus 78 v~~a~~ 83 (89)
T 3d2w_A 78 ISNAEP 83 (89)
T ss_dssp EEECC-
T ss_pred EEEcCC
Confidence 888764
No 340
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=4e-15 Score=112.18 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=68.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||+++++++|+++|+.||.|.+|.++. ++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~--~g~~l~V~ 79 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKF--HHVPLYLE 79 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBS--SSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEE--CCeEEEEE
Confidence 3468999999999999999999999999999998874 458999999999999999999999998 57888998
Q ss_pred cccc
Q 017133 193 WATF 196 (376)
Q Consensus 193 ~~~~ 196 (376)
|+..
T Consensus 80 ~a~~ 83 (111)
T 1whx_A 80 WAPI 83 (111)
T ss_dssp EEET
T ss_pred ECCC
Confidence 8764
No 341
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=6.5e-15 Score=111.70 Aligned_cols=64 Identities=19% Similarity=0.397 Sum_probs=59.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCC---CCccceEEEEecCHHHHHHHHHHh
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQT---GQSEGYGFVEFYSRAAAEKVLQSY 177 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~---g~~~g~afV~f~~~~~a~~a~~~l 177 (376)
...++|||+|||+++++++|+++|+.||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4678999999999999999999999999999 888888766 799999999999999999999988
No 342
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.6e-15 Score=108.32 Aligned_cols=78 Identities=26% Similarity=0.395 Sum_probs=66.0
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA 286 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~ 286 (376)
.+++|||+|||.++++++|+++|+ .||.|.+|.+.++ ++|||||+|.+.++|.+|+. ....+.|+.|+|.++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFS-QYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHST-TTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 567999999999999999999995 9999999998754 68999999999999976432 134458999999999
Q ss_pred CCCCcC
Q 017133 287 TPKKAS 292 (376)
Q Consensus 287 ~~~~~~ 292 (376)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 887554
No 343
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.9e-15 Score=107.33 Aligned_cols=78 Identities=15% Similarity=0.332 Sum_probs=67.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCC-ceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcC-CcCCCCCCcc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQ-VVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG-SLMPNTDQPF 189 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~-v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~-~~~~~~~~~~ 189 (376)
....++|||+|||+++++++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|++.|++ ..+ .++.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l 75 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVEL--HGKIM 75 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEE--TTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeE--CCEEE
Confidence 356789999999999999999999999999 6666553 358999999999999999999999 788 56888
Q ss_pred cccccccCC
Q 017133 190 RLNWATFSG 198 (376)
Q Consensus 190 ~~~~~~~~~ 198 (376)
++.++....
T Consensus 76 ~v~~a~~~~ 84 (93)
T 2cqh_A 76 EVDYSVSKK 84 (93)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 998887543
No 344
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=3.8e-14 Score=100.14 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=64.2
Q ss_pred CCce-EEEcCCCCCCCHHH----HHHHHHhcC-CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 017133 114 ETKT-IWIGDLFHWMDETF----LHNCFSHTG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (376)
Q Consensus 114 ~~~~-v~v~nLp~~~~~~~----l~~~f~~~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 187 (376)
++.+ |||+|||+++++++ |+++|+.|| .|.+| ++ |+|||+|.+.++|.+|++.|+|..+ .++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l--~gr 74 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDV--FGN 74 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCS--SSS
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCcc--CCc
Confidence 4555 99999999999998 558999994 99888 33 9999999999999999999999999 778
Q ss_pred cccccccccCCC
Q 017133 188 PFRLNWATFSGS 199 (376)
Q Consensus 188 ~~~~~~~~~~~~ 199 (376)
+|++.++.....
T Consensus 75 ~i~v~~A~~~sd 86 (96)
T 2diu_A 75 RIIVSFTPKNRE 86 (96)
T ss_dssp CCEEESSCCSCC
T ss_pred eEEEEecCCCcc
Confidence 999999875543
No 345
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.9e-14 Score=104.79 Aligned_cols=78 Identities=17% Similarity=0.307 Sum_probs=68.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|| ++++++|+++|+.||.|.+|++. +++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~ 80 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLK 80 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEE--TTEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeE--CCeEEE
Confidence 4456789999996 99999999999999999999884 4568999999999999999999999988 678899
Q ss_pred ccccccCC
Q 017133 191 LNWATFSG 198 (376)
Q Consensus 191 ~~~~~~~~ 198 (376)
+.++....
T Consensus 81 v~~a~~~~ 88 (97)
T 1x5p_A 81 VNIARKQP 88 (97)
T ss_dssp EECCSSCC
T ss_pred EEECCCCC
Confidence 98887543
No 346
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=3.2e-15 Score=109.82 Aligned_cols=80 Identities=25% Similarity=0.346 Sum_probs=69.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|||+++++++|+++|..||.|..+ ..++.++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~ 84 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI--DGRSVS 84 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE--TTEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 44568899999999999999999999999987665 23788999999999999999999999999888 567888
Q ss_pred ccccccC
Q 017133 191 LNWATFS 197 (376)
Q Consensus 191 ~~~~~~~ 197 (376)
+.++...
T Consensus 85 v~~a~~~ 91 (96)
T 1fjc_A 85 LYYTGEK 91 (96)
T ss_dssp EEECSSS
T ss_pred EEEcCCC
Confidence 8887644
No 347
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=108.59 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=65.5
Q ss_pred CCCCceEEE--cCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcC---CCCC
Q 017133 112 NDETKTIWI--GDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM---PNTD 186 (376)
Q Consensus 112 ~~~~~~v~v--~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~---~~~~ 186 (376)
..++++||| +||++++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|++.|||..+ .+.+
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345788999 779999999999999999999999987643 58999999999999999999999866 2335
Q ss_pred Ccccccccc
Q 017133 187 QPFRLNWAT 195 (376)
Q Consensus 187 ~~~~~~~~~ 195 (376)
+++.+.++.
T Consensus 96 ~~l~v~~a~ 104 (114)
T 2cq2_A 96 ITLYLNFVE 104 (114)
T ss_dssp EECEEEEES
T ss_pred cEEEEEecc
Confidence 666665544
No 348
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=4.6e-14 Score=106.57 Aligned_cols=84 Identities=13% Similarity=0.235 Sum_probs=71.3
Q ss_pred CCCCCceEEECCCCCCCc-----------HHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 017133 204 EACSDLSIFVGDLAPDVT-----------DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~~t-----------~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~ 272 (376)
...++++|+|.||..... +++|+++|+ .||.|.+|.| .++ .++|||||+|.+.++|.+|++.||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~-~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECS-KFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGG-GTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHH-ccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 445678999999944332 589999996 9999999966 553 379999999999999999999999
Q ss_pred CceecCcceEEeecCCCCcC
Q 017133 273 GVYCSSRPMRIDVATPKKAS 292 (376)
Q Consensus 273 g~~~~g~~i~v~~~~~~~~~ 292 (376)
|+.++|+.|+|.|+.++...
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999999886543
No 349
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.55 E-value=1.6e-14 Score=107.31 Aligned_cols=83 Identities=17% Similarity=0.190 Sum_probs=71.8
Q ss_pred CCCceEEECCC--CCCCc--------HHHHHHHHhhhCCCeeEEEEEecCCC--CCcceEEEEEeCCHHHHHHHHHHhCC
Q 017133 206 CSDLSIFVGDL--APDVT--------DSILQETFSSKYPSVKGAKVIIDSNT--GRTKGYGFVRFGDENERSRAMTEMNG 273 (376)
Q Consensus 206 ~~~~~l~v~nl--p~~~t--------~~~l~~~F~~~~g~i~~v~i~~~~~~--~~~~g~afV~f~~~~~A~~Al~~l~g 273 (376)
.++++|.|.|+ |..+. ++||++.|+ +||.|.+|.|.++..+ +.++|++||+|.+.++|.+|++.|||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~-k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECS-KYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHH-TTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHH-ccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 36789999998 43443 379999996 9999999999988654 36899999999999999999999999
Q ss_pred ceecCcceEEeecCCC
Q 017133 274 VYCSSRPMRIDVATPK 289 (376)
Q Consensus 274 ~~~~g~~i~v~~~~~~ 289 (376)
+.++||.|+|.|+...
T Consensus 82 ~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 82 RKFANRVVVTKYCDPD 97 (105)
T ss_dssp CEETTEECEEEEECHH
T ss_pred CEeCCCEEEEEEeCHH
Confidence 9999999999998654
No 350
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.54 E-value=1.7e-14 Score=109.47 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=59.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCC
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~ 186 (376)
...++|||+|||+++++++|+++|..||.|.+|.++.+ |||||+|.+.++|.+||+.|++..+.+..
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 45789999999999999999999999999999999876 79999999999999999999999995543
No 351
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.53 E-value=4.5e-14 Score=119.79 Aligned_cols=79 Identities=16% Similarity=0.276 Sum_probs=70.6
Q ss_pred CCCCceEEECCCCCCC---------cHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 017133 205 ACSDLSIFVGDLAPDV---------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (376)
Q Consensus 205 ~~~~~~l~v~nlp~~~---------t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~ 275 (376)
....++|||+||+..+ ++++|+++|+ .||.|++|+|+.+ +|||||+|.+.++|+.|++.|+|..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~-~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFS-RLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHH-TTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHH-ccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 4567899999999998 7999999996 9999999999853 7899999999999999999999999
Q ss_pred e------------cCcceEEeecCCCC
Q 017133 276 C------------SSRPMRIDVATPKK 290 (376)
Q Consensus 276 ~------------~g~~i~v~~~~~~~ 290 (376)
| .|+.|.|+|++...
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 9 89999999998653
No 352
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.53 E-value=3.9e-15 Score=117.94 Aligned_cols=84 Identities=20% Similarity=0.342 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEE--E---eecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCC
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVK--V---IRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~--~---~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~ 186 (376)
....++|||+|||+++++++|+++|..||.|..+. + +....+|+++|||||+|.+.++|.+|+..|++..+ .+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~--~g 119 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL--FG 119 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE--TT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe--CC
Confidence 45678999999999999999999999999987741 1 11123789999999999999999999999999999 67
Q ss_pred CcccccccccC
Q 017133 187 QPFRLNWATFS 197 (376)
Q Consensus 187 ~~~~~~~~~~~ 197 (376)
+.|+|.++...
T Consensus 120 ~~l~V~~a~~~ 130 (143)
T 3egn_A 120 KPMVVQFARSA 130 (143)
T ss_dssp EECEEEECCCS
T ss_pred cEEEEEECCCC
Confidence 88888888654
No 353
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=1.1e-14 Score=105.03 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=67.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||+++++++|+++|+.| .|.++++. +++|||||+|.+.++|.+|++.|++..+ .++.+++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~--~g~~l~V~ 73 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSF--RGKDLIVQ 73 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEE--TTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeE--CCcEEEEE
Confidence 357899999999999999999999999 99999884 5779999999999999999999999998 66888888
Q ss_pred cccc
Q 017133 193 WATF 196 (376)
Q Consensus 193 ~~~~ 196 (376)
++..
T Consensus 74 ~a~~ 77 (88)
T 1wg1_A 74 LQPT 77 (88)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 8763
No 354
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.53 E-value=3.7e-14 Score=107.33 Aligned_cols=81 Identities=16% Similarity=0.282 Sum_probs=70.8
Q ss_pred CCceEEECCCC--CCC---cHHHHHHHHhhhCCCeeEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceec
Q 017133 207 SDLSIFVGDLA--PDV---TDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSRAMTEMNGVYCS 277 (376)
Q Consensus 207 ~~~~l~v~nlp--~~~---t~~~l~~~F~~~~g~i~~v~i~~~~~----~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~ 277 (376)
++++|+|.|+- .++ .++||++.|+ +||.|.+|.|.++.. +++++|++||+|.+.++|.+|++.|||+.++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~-k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHT-TTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHh-ccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 57799999983 222 3689999996 999999999998864 3567899999999999999999999999999
Q ss_pred CcceEEeecCC
Q 017133 278 SRPMRIDVATP 288 (376)
Q Consensus 278 g~~i~v~~~~~ 288 (376)
||.|+|.|+..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999865
No 355
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.51 E-value=3.5e-14 Score=132.58 Aligned_cols=83 Identities=17% Similarity=0.316 Sum_probs=76.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccc
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRL 191 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~ 191 (376)
....++|||+|||+.+++++|.++|..||.|+.|.|+.++.+|.++|||||+|.+.++|.+||..|++..| .+..|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i--~gr~i~V 176 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI--DGRRVLV 176 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE--CCEEEEE
Confidence 35578999999999999999999999999999999999998999999999999999999999999999999 6678888
Q ss_pred ccccc
Q 017133 192 NWATF 196 (376)
Q Consensus 192 ~~~~~ 196 (376)
.++..
T Consensus 177 ~~a~~ 181 (437)
T 3pgw_S 177 DVERG 181 (437)
T ss_pred EEeCC
Confidence 88764
No 356
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.50 E-value=1.1e-14 Score=108.09 Aligned_cols=72 Identities=22% Similarity=0.441 Sum_probs=63.1
Q ss_pred ECCCCCCCcHHHHHHHH------------hhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcc
Q 017133 213 VGDLAPDVTDSILQETF------------SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRP 280 (376)
Q Consensus 213 v~nlp~~~t~~~l~~~F------------~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~ 280 (376)
+.||+..+++++|++.| + +||.|.+|.|.++.. ++++|+|||+|.+.++|.+|++.|||+.++||.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~-~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEE-KYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEE
Confidence 45677777777666555 8 999999999998854 789999999999999999999999999999999
Q ss_pred eEEeec
Q 017133 281 MRIDVA 286 (376)
Q Consensus 281 i~v~~~ 286 (376)
|+|.|+
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999987
No 357
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.49 E-value=4.5e-14 Score=101.58 Aligned_cols=71 Identities=17% Similarity=0.505 Sum_probs=63.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhc----C-------CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHT----G-------QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSL 181 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~----G-------~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~ 181 (376)
...++|||+|||+++++++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .|++..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 568999999999999999999999999 8 8999988765 589999999999999999 999999
Q ss_pred CCCCCCccccc
Q 017133 182 MPNTDQPFRLN 192 (376)
Q Consensus 182 ~~~~~~~~~~~ 192 (376)
+ .++.++++
T Consensus 77 ~--~g~~l~V~ 85 (87)
T 2hzc_A 77 F--QGQSLKIR 85 (87)
T ss_dssp E--TTEECEEE
T ss_pred E--CCeEEEEe
Confidence 8 45556554
No 358
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=3.4e-14 Score=102.40 Aligned_cols=78 Identities=19% Similarity=0.260 Sum_probs=65.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccccc
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLN 192 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~ 192 (376)
...++|||+|||+++++++|+++|+.||.|.+|+++.+ ++|||||+|.+.++|++ +++..+...++.+++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQS----LCGEDLIIKGISVHIS 73 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEE
Confidence 45799999999999999999999999999999998865 67999999999999975 4555555577888888
Q ss_pred ccccCCC
Q 017133 193 WATFSGS 199 (376)
Q Consensus 193 ~~~~~~~ 199 (376)
++.....
T Consensus 74 ~a~~~~~ 80 (88)
T 1wf0_A 74 NAEPKHN 80 (88)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 8765443
No 359
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.48 E-value=1.5e-13 Score=101.96 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=70.6
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHHHhcCCceEEEEeecCCC-CCccceEEEEecCHHHHHHHHHHhcCCcCCCCC
Q 017133 113 DETKTIWIGDLFH-----WMDETFLHNCFSHTGQVVNVKVIRNKQT-GQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTD 186 (376)
Q Consensus 113 ~~~~~v~v~nLp~-----~~~~~~l~~~f~~~G~v~~~~~~~~~~~-g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~ 186 (376)
.++++|+|.||.. +-++++|++.|++||.|.+|+|++++.+ +.++|||||+|.+.++|.+|++.|+|..+ .+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~--~G 83 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF--GG 83 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE--TT
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE--CC
Confidence 4688999999973 3478999999999999999999998654 68999999999999999999999999999 56
Q ss_pred Ccccccccc
Q 017133 187 QPFRLNWAT 195 (376)
Q Consensus 187 ~~~~~~~~~ 195 (376)
+.|++.++.
T Consensus 84 r~i~v~~a~ 92 (105)
T 2pe8_A 84 RVVKACFYN 92 (105)
T ss_dssp EECEEEECC
T ss_pred cEEEEEEcC
Confidence 788887764
No 360
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.47 E-value=1.9e-13 Score=104.46 Aligned_cols=77 Identities=17% Similarity=0.318 Sum_probs=68.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCccc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFR 190 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 190 (376)
.....++|||+|| ++++++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|++.|++..+ .++.++
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~--~g~~l~ 104 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQV--ESVQLK 104 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBC--SSCBCE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEE--CCeEEE
Confidence 3456889999995 79999999999999999999986 4568999999999999999999999988 678889
Q ss_pred ccccccC
Q 017133 191 LNWATFS 197 (376)
Q Consensus 191 ~~~~~~~ 197 (376)
+.++...
T Consensus 105 V~~a~~~ 111 (121)
T 2bz2_A 105 VNIARKQ 111 (121)
T ss_dssp EEECCSS
T ss_pred EEEeCCC
Confidence 9888754
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.43 E-value=2.5e-13 Score=112.80 Aligned_cols=78 Identities=17% Similarity=0.235 Sum_probs=68.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCcccccc
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQPFRLNW 193 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~~~~~~~ 193 (376)
..++|||+|||+++++++|+++|+.||.|.+|+++++. ++.++|||||+|.+.++|.+|+..++ ..+ .++.+++.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~--~Gr~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKY--KETDLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEE--TTEECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeE--CCEEEEEEE
Confidence 35899999999999999999999999999999999987 59999999999999999999997654 455 567777776
Q ss_pred cc
Q 017133 194 AT 195 (376)
Q Consensus 194 ~~ 195 (376)
+.
T Consensus 184 ~~ 185 (193)
T 2voo_A 184 KD 185 (193)
T ss_dssp TT
T ss_pred hH
Confidence 54
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.5e-12 Score=93.29 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=58.7
Q ss_pred CCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcC
Q 017133 218 PDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKAS 292 (376)
Q Consensus 218 ~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~ 292 (376)
..+++++|+++|+ .||.|.+|.|+ ++++|||||+|.+.++|..|++.+++ +.+++|+|.|++.+...
T Consensus 27 ~~~te~~L~~~F~-~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~~ 93 (100)
T 2d9o_A 27 GGYSKDVLLRLLQ-KYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQD 93 (100)
T ss_dssp CSCCHHHHHHHHH-TTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCCC
T ss_pred CCCCHHHHHHHHH-hcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCCC
Confidence 5789999999996 99999999987 46789999999999999999997554 67999999999876443
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=2.8e-12 Score=96.73 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=68.4
Q ss_pred CCCCCceEEEcCCCCCCC-----------HHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcC
Q 017133 111 TNDETKTIWIGDLFHWMD-----------ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~-----------~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 179 (376)
.+..+++|+|.||..... +++|+++|++||.|.+|.| .++ .++|||||+|.+.++|.+|++.|++
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 456789999999954432 5899999999999999965 554 3789999999999999999999999
Q ss_pred CcCCCCCCcccccccccC
Q 017133 180 SLMPNTDQPFRLNWATFS 197 (376)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~ 197 (376)
..+ .++.|++.++...
T Consensus 87 ~~~--~gr~l~v~~a~~~ 102 (112)
T 2dit_A 87 RWF--GGRQITAQAWDGT 102 (112)
T ss_dssp CEE--TTEECEEEECCSC
T ss_pred CEE--CCcEEEEEEeCCC
Confidence 998 5788899887654
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.39 E-value=7e-13 Score=112.47 Aligned_cols=80 Identities=21% Similarity=0.380 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcC
Q 017133 112 NDETKTIWIGDLFHWM---------DETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~---------~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~ 182 (376)
....++|||+||+..+ ++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|+.|++.|++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4578999999999998 79999999999999999999864 58999999999999999999999988
Q ss_pred C----------CCCCcccccccccC
Q 017133 183 P----------NTDQPFRLNWATFS 197 (376)
Q Consensus 183 ~----------~~~~~~~~~~~~~~ 197 (376)
. +.++.|+|.|+...
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 2 26788999998754
No 365
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=1.8e-12 Score=97.23 Aligned_cols=79 Identities=11% Similarity=0.091 Sum_probs=66.6
Q ss_pred CCCceEEECCCC--CCC--------cHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCce
Q 017133 206 CSDLSIFVGDLA--PDV--------TDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVY 275 (376)
Q Consensus 206 ~~~~~l~v~nlp--~~~--------t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~ 275 (376)
.++++|.|.|+= ... .++||++.|+ +||.|.+|.|.++. ++|++||+|.+.++|.+|++.|||+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~-kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECN-KHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHT-TTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHh-ccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 457789998873 221 1368899996 99999999886652 58999999999999999999999999
Q ss_pred ecCcceEEeecCCC
Q 017133 276 CSSRPMRIDVATPK 289 (376)
Q Consensus 276 ~~g~~i~v~~~~~~ 289 (376)
++||.|+|.|+...
T Consensus 80 f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 80 FAGKMITAAYVPLP 93 (114)
T ss_dssp ETTEECEEEEECHH
T ss_pred ECCEEEEEEEEcHH
Confidence 99999999999654
No 366
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.31 E-value=3.6e-12 Score=114.02 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=65.2
Q ss_pred CCCCceEEECC--CCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceec---Cc
Q 017133 205 ACSDLSIFVGD--LAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCS---SR 279 (376)
Q Consensus 205 ~~~~~~l~v~n--lp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~---g~ 279 (376)
..++++|||+| |+..+|+++|+++|+ .||.|.+|.+.. +||||||+|.+.++|++||+.|||+.+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~-~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLE-KCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHH-TTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHH-hcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 45678999998 578999999999996 999999887642 4789999999999999999999999883 44
Q ss_pred --ceEEeecC
Q 017133 280 --PMRIDVAT 287 (376)
Q Consensus 280 --~i~v~~~~ 287 (376)
.|.|.|+.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 67778874
No 367
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.31 E-value=3.2e-12 Score=94.84 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=68.7
Q ss_pred CCCceEEEcCC--CCCCC--------HHHHHHHHHhcCCceEEEEeecCCC--CCccceEEEEecCHHHHHHHHHHhcCC
Q 017133 113 DETKTIWIGDL--FHWMD--------ETFLHNCFSHTGQVVNVKVIRNKQT--GQSEGYGFVEFYSRAAAEKVLQSYSGS 180 (376)
Q Consensus 113 ~~~~~v~v~nL--p~~~~--------~~~l~~~f~~~G~v~~~~~~~~~~~--g~~~g~afV~f~~~~~a~~a~~~l~~~ 180 (376)
.+++.|.|.|+ |.++. +++|++.|++||.|.+|+|++++.+ +.++|++||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46889999998 44443 3689999999999999999988754 368999999999999999999999999
Q ss_pred cCCCCCCcccccccc
Q 017133 181 LMPNTDQPFRLNWAT 195 (376)
Q Consensus 181 ~~~~~~~~~~~~~~~ 195 (376)
.+ .++.|++.+..
T Consensus 83 ~f--~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KF--ANRVVVTKYCD 95 (105)
T ss_dssp EE--TTEECEEEEEC
T ss_pred Ee--CCCEEEEEEeC
Confidence 99 56778777654
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.31 E-value=7.2e-13 Score=98.20 Aligned_cols=72 Identities=18% Similarity=0.274 Sum_probs=61.6
Q ss_pred EcCCCCCCCHHHHHHHH------------HhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 017133 120 IGDLFHWMDETFLHNCF------------SHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (376)
Q Consensus 120 v~nLp~~~~~~~l~~~f------------~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 187 (376)
+.||++.+++++|++.| ++||.|.+|+++++. +++++|||||+|.+.++|.+|++.|+|..+ .++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~--~Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWF--NGQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEE--TTE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEE--CCE
Confidence 56777778888777666 999999999999887 489999999999999999999999999998 567
Q ss_pred ccccccc
Q 017133 188 PFRLNWA 194 (376)
Q Consensus 188 ~~~~~~~ 194 (376)
.+++.++
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 7777664
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=5.4e-11 Score=86.94 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=63.4
Q ss_pred CCCceEEEcCCC-------CCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCC
Q 017133 113 DETKTIWIGDLF-------HWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (376)
Q Consensus 113 ~~~~~v~v~nLp-------~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 185 (376)
....+|.|.-.. .++++++|+++|++||.|.+|+++ ++++|||||+|.+.++|..|++.+++ + .
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~--~ 78 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--L--V 78 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--C--S
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--C--C
Confidence 346677777655 458999999999999999999987 36789999999999999999987554 2 5
Q ss_pred CCcccccccccCC
Q 017133 186 DQPFRLNWATFSG 198 (376)
Q Consensus 186 ~~~~~~~~~~~~~ 198 (376)
+++++|.|+....
T Consensus 79 g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 79 DNPLKISWLEGQP 91 (100)
T ss_dssp SSBCEEECSSCCC
T ss_pred CCeEEEEEccCCC
Confidence 6889999987544
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.28 E-value=6.6e-12 Score=94.89 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=68.5
Q ss_pred CCceEEEcCCCC--C---CCHHHHHHHHHhcCCceEEEEeecCC----CCCccceEEEEecCHHHHHHHHHHhcCCcCCC
Q 017133 114 ETKTIWIGDLFH--W---MDETFLHNCFSHTGQVVNVKVIRNKQ----TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (376)
Q Consensus 114 ~~~~v~v~nLp~--~---~~~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~ 184 (376)
++++|+|.|+-. + --++||++.|++||.|.+|+|++++. ++.++|++||+|.+.++|.+|++.|||..+
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f-- 96 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 96 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE--
Confidence 689999999942 2 23789999999999999999999864 457889999999999999999999999999
Q ss_pred CCCcccccccc
Q 017133 185 TDQPFRLNWAT 195 (376)
Q Consensus 185 ~~~~~~~~~~~ 195 (376)
.++.|++.+..
T Consensus 97 ~GR~i~v~~~~ 107 (118)
T 3ue2_A 97 AGRKVVAEVYD 107 (118)
T ss_dssp TTEECEEEEEC
T ss_pred CCcEEEEEEcC
Confidence 56777777654
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.25 E-value=1.1e-11 Score=110.93 Aligned_cols=111 Identities=12% Similarity=0.157 Sum_probs=77.2
Q ss_pred CCCCCceEEEcC--CCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCC-CCCC
Q 017133 111 TNDETKTIWIGD--LFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP-NTDQ 187 (376)
Q Consensus 111 ~~~~~~~v~v~n--Lp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~-~~~~ 187 (376)
.+.++.+|||+| |++.++|++|+++|++||.|.+|.+.. +||||||+|.+.++|++|++.|||..+. ..++
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 356788999999 579999999999999999999987753 4689999999999999999999998763 2233
Q ss_pred --cccccccccCCCCC-ccCCCCCceEEECCCCCCCcHHHHHHHHh
Q 017133 188 --PFRLNWATFSGSDR-RTEACSDLSIFVGDLAPDVTDSILQETFS 230 (376)
Q Consensus 188 --~~~~~~~~~~~~~~-~~~~~~~~~l~v~nlp~~~t~~~l~~~F~ 230 (376)
++.+.+........ .....+....| +|..+++++=..++.
T Consensus 88 ~~~ly~~~~~~~~~~~~~~~~lp~Gl~~---~p~fis~~Ee~~Ll~ 130 (345)
T 3tht_A 88 KITLYLNFVEKVQWKELRPQALPPGLMV---VEEIISSEEEKMLLE 130 (345)
T ss_dssp EEECEEEECSSEEEEEEECCSCCTTEEE---ETTCSCHHHHHHHHT
T ss_pred ceEEEEEEeecccccccccccCCCceEE---EcCcCCHHHHHHHHH
Confidence 45556553211100 01111222223 345577766666663
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.5e-10 Score=86.72 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=70.8
Q ss_pred CCCCCceEEECCCCCC-CcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCC-HHHHHHHHHHhC--CceecCc
Q 017133 204 EACSDLSIFVGDLAPD-VTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGD-ENERSRAMTEMN--GVYCSSR 279 (376)
Q Consensus 204 ~~~~~~~l~v~nlp~~-~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~Al~~l~--g~~~~g~ 279 (376)
.....+.|+|+||+.+ +++++|+++|+ .||.|..|.+.++.. .|||+|.+ .++|..|++.|+ +..|.+.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~-~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFS-NHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTC-SSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHH-hcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 3456789999999999 99999999996 999999999988755 59999999 899999999995 6888999
Q ss_pred ceEEeecCCCCcC
Q 017133 280 PMRIDVATPKKAS 292 (376)
Q Consensus 280 ~i~v~~~~~~~~~ 292 (376)
.++++........
T Consensus 87 ~~~~evL~GeeE~ 99 (121)
T 1owx_A 87 EVTWEVLEGEVEK 99 (121)
T ss_dssp SEEEEECCHHHHH
T ss_pred EEEEEECCCHHHH
Confidence 9999877654433
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=1.5e-10 Score=81.11 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=61.3
Q ss_pred CCceEEECCCC----CCCcH----HHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC
Q 017133 207 SDLSIFVGDLA----PDVTD----SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS 278 (376)
Q Consensus 207 ~~~~l~v~nlp----~~~t~----~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g 278 (376)
+..+|+|.-.+ .++-+ .+|.+.|+ .||.|..+++..++ +||+|.+.++|.+||+ |||..++|
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFA-SFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHH-TTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHH-hCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 45577776655 23333 67899996 99999999998873 8999999999999997 99999999
Q ss_pred cceEEeecCCC
Q 017133 279 RPMRIDVATPK 289 (376)
Q Consensus 279 ~~i~v~~~~~~ 289 (376)
|.|+|.++++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999999864
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.07 E-value=3.9e-10 Score=84.50 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=63.5
Q ss_pred CCCceEEEcCCCCCCC----------HHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcC
Q 017133 113 DETKTIWIGDLFHWMD----------ETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLM 182 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~----------~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~ 182 (376)
.+++.|.|.|+=.... ++||++.|++||.|.+|.+.++. .+|++||+|.+.++|.+|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4578899999853222 45789999999999999987653 589999999999999999999999999
Q ss_pred CCCCCcccccccc
Q 017133 183 PNTDQPFRLNWAT 195 (376)
Q Consensus 183 ~~~~~~~~~~~~~ 195 (376)
.++.|++.+..
T Consensus 81 --~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 --AGKMITAAYVP 91 (114)
T ss_dssp --TTEECEEEEEC
T ss_pred --CCEEEEEEEEc
Confidence 56777777654
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1.2e-09 Score=81.88 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=58.4
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecC-HHHHHHHHHHhcCCc
Q 017133 111 TNDETKTIWIGDLFHW-MDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYS-RAAAEKVLQSYSGSL 181 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~-~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~-~~~a~~a~~~l~~~~ 181 (376)
.-...+.|+|+||+++ +++++|+++|+.||.|..|.+.++.. .|||+|.+ .++|..|++.++...
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~ 80 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGN 80 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSC
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCC
Confidence 4467899999999999 99999999999999999999998875 59999999 899999999986443
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.96 E-value=1.6e-09 Score=92.12 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=61.2
Q ss_pred CcHHHHHHHHhhhCCCeeEEEEEecCC----CCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCC
Q 017133 220 VTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATP 288 (376)
Q Consensus 220 ~t~~~l~~~F~~~~g~i~~v~i~~~~~----~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~ 288 (376)
-.+++|++.|+ .||.|.++.|.++.. +++++|++||+|.+.++|.+|++.|||+.++||.|++.|+..
T Consensus 141 e~~~dl~~e~~-~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECG-KFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHT-TTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHH-ccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 45689999996 999999999986644 448999999999999999999999999999999999999864
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=1.2e-09 Score=76.75 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=60.8
Q ss_pred CCCceEEECCCCCC-----CcH----HHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCcee
Q 017133 206 CSDLSIFVGDLAPD-----VTD----SILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYC 276 (376)
Q Consensus 206 ~~~~~l~v~nlp~~-----~t~----~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~ 276 (376)
.+..+|+|.-++.. +-+ .+|.+.|+ .||.|..+++..++ +||+|.+.++|.+||+ |+|..+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~-~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLG-SYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHH-HHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHH-HCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee
Confidence 35568888877642 222 56889996 99999999999873 9999999999999998 999999
Q ss_pred cCcceEEeecCC
Q 017133 277 SSRPMRIDVATP 288 (376)
Q Consensus 277 ~g~~i~v~~~~~ 288 (376)
+||.|+|++-.+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999987653
No 378
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=3.1e-08 Score=69.34 Aligned_cols=72 Identities=17% Similarity=0.270 Sum_probs=57.5
Q ss_pred CCCceEEEcCCC----CCCCH----HHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCC
Q 017133 113 DETKTIWIGDLF----HWMDE----TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPN 184 (376)
Q Consensus 113 ~~~~~v~v~nLp----~~~~~----~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~ 184 (376)
++..+|+|.-.+ ...-+ .+|.+.|..||.|..++++.++ +||+|.+.++|.+|++ |+|..+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v-- 73 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL-- 73 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE--
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe--
Confidence 345677777666 22333 6789999999999999999875 8999999999999998 999998
Q ss_pred CCCcccccccc
Q 017133 185 TDQPFRLNWAT 195 (376)
Q Consensus 185 ~~~~~~~~~~~ 195 (376)
.++.++++.+.
T Consensus 74 ~Gr~LkV~lkt 84 (91)
T 2dnr_A 74 LNRTITIALKS 84 (91)
T ss_dssp TTEEEEEEECC
T ss_pred CCeEEEEEeCC
Confidence 56667776654
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.63 E-value=2e-07 Score=66.74 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=66.1
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhC-----CCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcce
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKY-----PSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPM 281 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~-----g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i 281 (376)
..++|-+-|||..+++.-|+.++ +.+ |.|.+|.+..|.. -|+|+|.+..+|-+|.-.|+|.+|.||.|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lv-e~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFL-QEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHH-HHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHH-hhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 45789999999999999999999 599 9999999887743 69999999999999999999999999999
Q ss_pred EEeec
Q 017133 282 RIDVA 286 (376)
Q Consensus 282 ~v~~~ 286 (376)
+|.-.
T Consensus 93 r~gTv 97 (117)
T 2l9w_A 93 RSGTI 97 (117)
T ss_dssp EEECH
T ss_pred EecCH
Confidence 99644
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.56 E-value=1.3e-07 Score=80.31 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=63.0
Q ss_pred CceEEEcCCC-----CCCCHHHHHHHHHhcCCceEEEEeecCC----CCCccceEEEEecCHHHHHHHHHHhcCCcCCCC
Q 017133 115 TKTIWIGDLF-----HWMDETFLHNCFSHTGQVVNVKVIRNKQ----TGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNT 185 (376)
Q Consensus 115 ~~~v~v~nLp-----~~~~~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~ 185 (376)
...+.+.++- .+-.+++|++.|++||.|.++.|+++.. +++++|++||+|.+.++|.+|++.|+|+.+ .
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~--~ 201 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF--A 201 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS--S
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE--C
Confidence 3445554442 2345788999999999999999986643 448999999999999999999999999999 6
Q ss_pred CCcccccccc
Q 017133 186 DQPFRLNWAT 195 (376)
Q Consensus 186 ~~~~~~~~~~ 195 (376)
++.|++.+..
T Consensus 202 gr~i~~~~~~ 211 (222)
T 3dxb_A 202 GRKVVAEVYD 211 (222)
T ss_dssp SSBCEEEECC
T ss_pred CeEEEEEEcC
Confidence 6777776654
No 381
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.47 E-value=1.8e-07 Score=65.78 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=57.5
Q ss_pred CCCceEEEcCCCCC-----CCH----HHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCC
Q 017133 113 DETKTIWIGDLFHW-----MDE----TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (376)
Q Consensus 113 ~~~~~v~v~nLp~~-----~~~----~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 183 (376)
++..+|+|.-++.+ .-+ .+|.+.|..||.|..++++.++ +||+|.+.++|.+|++ |+|..+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v- 82 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKV- 82 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEE-
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeee-
Confidence 45678888887643 222 5688999999999999999885 9999999999999998 999999
Q ss_pred CCCCccccccc
Q 017133 184 NTDQPFRLNWA 194 (376)
Q Consensus 184 ~~~~~~~~~~~ 194 (376)
.++.+++++.
T Consensus 83 -~Gr~L~V~~k 92 (95)
T 1ufw_A 83 -KGRAVKISGP 92 (95)
T ss_dssp -TTEEEEEECC
T ss_pred -CCeEEEEecc
Confidence 5566666543
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=2.1e-05 Score=56.00 Aligned_cols=74 Identities=18% Similarity=0.273 Sum_probs=59.3
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhh----CCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSK----YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~----~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
..++|.|.|||..++++.|.-+|.+. -|.|..+.... +-|+|+|.+.+.|.+.|+. ..+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 35689999999999999999999642 45577776543 3699999999999999863 36788899999
Q ss_pred EeecCCC
Q 017133 283 IDVATPK 289 (376)
Q Consensus 283 v~~~~~~ 289 (376)
|....++
T Consensus 78 V~P~~~~ 84 (104)
T 2dhx_A 78 LRPAPPR 84 (104)
T ss_dssp EEECCCC
T ss_pred EEcCCCC
Confidence 9876555
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.06 E-value=2e-05 Score=56.53 Aligned_cols=66 Identities=12% Similarity=0.162 Sum_probs=60.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhc-----CCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCC
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHT-----GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~-----G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 183 (376)
.+..++|-|-|||..+++..|+.++.++ |.++.+.+..|- +-|+|+|.+...|.+|.-.|+|..+.
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEET
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeec
Confidence 3457899999999999999999999999 999999999886 47999999999999999999999884
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=0.00011 Score=52.30 Aligned_cols=89 Identities=18% Similarity=0.250 Sum_probs=65.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHh---c--CCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSH---T--GQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~---~--G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 187 (376)
...++|.|.|||.++.++.|.-+|+. - |+|.++.... +-|+|+|.+.+.|++.++. ....+ .+.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L--~~~ 74 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHEL--HGA 74 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBS--SSS
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-Cccee--cCe
Confidence 45789999999999999999999987 2 4788877654 2599999999999999964 23444 234
Q ss_pred cccccccccCCCCCccCCCCCceEEECCCCCCCc
Q 017133 188 PFRLNWATFSGSDRRTEACSDLSIFVGDLAPDVT 221 (376)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t 221 (376)
++.+.... .....+|++.+|++.++
T Consensus 75 ~LsV~P~~---------~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 75 QLSLRPAP---------PRAPARLLLQGLPPGTS 99 (104)
T ss_dssp BCEEEECC---------CCCCCCCCCCSCCCCCC
T ss_pred EEEEEcCC---------CCCcceEeeecCCCCCC
Confidence 44443322 22456899999998765
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.84 E-value=5.6e-05 Score=54.08 Aligned_cols=75 Identities=11% Similarity=0.087 Sum_probs=62.4
Q ss_pred CceEEECCCCCCC-c----HHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceE
Q 017133 208 DLSIFVGDLAPDV-T----DSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMR 282 (376)
Q Consensus 208 ~~~l~v~nlp~~~-t----~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~ 282 (376)
.++|+|.||+..+ . .+.++++|. .|+++.....++.- .-..|.|.+.++|.+|...||+..+.|+.|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~-~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFR-TYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHH-TTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHH-hhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 3589999998755 2 256789995 99998887777552 2579999999999999999999999999999
Q ss_pred EeecCCC
Q 017133 283 IDVATPK 289 (376)
Q Consensus 283 v~~~~~~ 289 (376)
|.++.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9999854
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.65 E-value=0.00031 Score=49.41 Aligned_cols=68 Identities=13% Similarity=0.208 Sum_probs=55.9
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCceec
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGR--TKGYGFVRFGDENERSRAMTEMNGVYCS 277 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~Al~~l~g~~~~ 277 (376)
++|.|++||+++|++++.+.++ ....+........+.+.. .-+.|||.|.+.+++..-.+.++|..+-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~-~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQ-PMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHC-SCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhc-CcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4799999999999999999996 888887777665543222 2367999999999999999999998873
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.65 E-value=0.00026 Score=49.72 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=46.0
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEM 271 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l 271 (376)
....++| ++|..+...||.++|+ .||.|. |..+-|. .|||-|.+++.|..|+..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs-~fggv~-I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFS-AFGNIQ-ISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHT-TTCSCC-CEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhh-ccCCEE-EEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 4457777 9999999999999996 999654 6666552 6999999999999999876
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.47 E-value=0.00046 Score=48.54 Aligned_cols=68 Identities=9% Similarity=0.099 Sum_probs=56.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCC--CccceEEEEecCHHHHHHHHHHhcCCcCC
Q 017133 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (376)
Q Consensus 116 ~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g--~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 183 (376)
++|.|++||+.+||+++.+.+..+..+.....+..+.+. ....-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 579999999999999999999999877766665554332 23357999999999999999999998763
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.40 E-value=0.0012 Score=46.34 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=48.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhc
Q 017133 111 TNDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (376)
Q Consensus 111 ~~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 178 (376)
.......++| ++|......||.++|+.||.| .|+.+.|. -|||.|.+++.|..|+..+.
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 3344566777 999999999999999999954 55556664 69999999999999998764
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.29 E-value=0.00056 Score=48.94 Aligned_cols=77 Identities=8% Similarity=0.026 Sum_probs=62.2
Q ss_pred CCCceEEEcCCCCCC-CH----HHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 017133 113 DETKTIWIGDLFHWM-DE----TFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMPNTDQ 187 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~-~~----~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~~~~~ 187 (376)
+-..+|+|.||+.++ .. +.++++|..|+++......+.-. =..|.|.+.++|.+|...|++..+ .+.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f--~g~ 74 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEF--LGK 74 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEE--TTE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhcccee--cCc
Confidence 346789999998755 22 56789999999998887776532 478999999999999999999999 556
Q ss_pred cccccccccC
Q 017133 188 PFRLNWATFS 197 (376)
Q Consensus 188 ~~~~~~~~~~ 197 (376)
.+++.++...
T Consensus 75 ~~r~YFgq~~ 84 (104)
T 1wey_A 75 EMKLYFAQTL 84 (104)
T ss_dssp ECEEECCCCS
T ss_pred eeEEEecCCC
Confidence 8888888743
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.24 E-value=0.0015 Score=48.08 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=58.2
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecC-cceEEee
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSS-RPMRIDV 285 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g-~~i~v~~ 285 (376)
..+.|.|-+.|... ...|.+.|+ .||+|.+.... .......|+|.+..+|++||. .||..|++ ..|-|.+
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~-~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFA-QYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHH-TTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHH-hhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 45689999999885 566778884 99999988762 123489999999999999995 59999974 7788887
Q ss_pred cCCC
Q 017133 286 ATPK 289 (376)
Q Consensus 286 ~~~~ 289 (376)
...+
T Consensus 94 ~~d~ 97 (119)
T 1wwh_A 94 CIDK 97 (119)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 6543
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.81 E-value=0.0016 Score=45.86 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=44.9
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~ 272 (376)
..++| ++|..+...||.++|+ .||.| .|..+-|. .|||-|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs-~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFS-AFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTT-TSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHh-ccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 35677 9999999999999996 99944 36666552 69999999999999998764
No 393
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.78 E-value=0.0009 Score=61.94 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=38.6
Q ss_pred CcEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCCC-eEEEEEeecCCCC
Q 017133 327 NATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGK-GCGFVQFANRLVS 376 (376)
Q Consensus 327 ~~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~-g~afV~F~~~e~~ 376 (376)
.++|+|. .|.++++.+|.++|+.||.|.++.+.+++ .||+|+|.+.+++
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~ 102 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESI 102 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHH
Confidence 4689996 79999999999999999999999998865 6999999999875
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.75 E-value=0.0017 Score=45.85 Aligned_cols=70 Identities=11% Similarity=0.167 Sum_probs=50.9
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCC--cceEEEEEeCCHHHHHHHHHHhCCceec
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGR--TKGYGFVRFGDENERSRAMTEMNGVYCS 277 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~Al~~l~g~~~~ 277 (376)
.+.+|.|+.||+.+|++++.+.++ ..-++........+.+.. .-..|||.|.+.++...-.+.++|..+-
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~-~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLR-PLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTS-CCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhC-CcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 345899999999999999988885 555544333222211111 1246999999999999999999998873
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.54 E-value=0.0032 Score=44.36 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=45.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhc
Q 017133 116 KTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (376)
Q Consensus 116 ~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 178 (376)
..++| ++|......||.++|+.||. ..|..+.|. -|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999994 356666664 69999999999999998765
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.34 E-value=0.003 Score=44.65 Aligned_cols=70 Identities=7% Similarity=0.039 Sum_probs=51.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCC--CccceEEEEecCHHHHHHHHHHhcCCcCC
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTG--QSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g--~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 183 (376)
-+-+|.|+.||+.+||+++.+.+..+-.+.....+..+.+- ..-.-|||.|.+.+++....+.++|..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 46789999999999999998888776554332222222111 12246899999999999999999998763
No 397
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.33 E-value=0.012 Score=43.30 Aligned_cols=63 Identities=11% Similarity=0.186 Sum_probs=51.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcCCcCC
Q 017133 113 DETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSGSLMP 183 (376)
Q Consensus 113 ~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~~~~~ 183 (376)
...+.|.|-+.|... ...|...|+.||.|.+....... ..-.|.|.++.+|++||. .||..+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~------NWihI~Y~s~~~A~rAL~-kNG~ii~ 84 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTG------NWMHIRYQSKLQARKALS-KDGRIFG 84 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSS------SEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCC------CeEEEEeCCHHHHHHHHH-hCCeEec
Confidence 457889999999885 66788899999999988763222 379999999999999995 5888774
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.01 E-value=0.0057 Score=45.67 Aligned_cols=77 Identities=12% Similarity=0.145 Sum_probs=54.7
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEE-EEEec------------CCCC-CcceEEEEEeCCHHHHHHHHHHhCCc
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGA-KVIID------------SNTG-RTKGYGFVRFGDENERSRAMTEMNGV 274 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v-~i~~~------------~~~~-~~~g~afV~f~~~~~A~~Al~~l~g~ 274 (376)
..|.|-+.|...+. .|.+.|+ +||.|.+- ...++ +... .......|+|++..+|.+||. .||.
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs-~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQ-EFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHG-GGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred eEEEEEecCHHHHH-HHHHHHH-hhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 46788888877554 5667785 99998772 11110 0000 123578999999999999995 5999
Q ss_pred eecCcceEEeecCC
Q 017133 275 YCSSRPMRIDVATP 288 (376)
Q Consensus 275 ~~~g~~i~v~~~~~ 288 (376)
.|+|..|-|.+.++
T Consensus 85 ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 85 VFNGVLLGVIPYTK 98 (132)
T ss_dssp EETTEECEEEECCH
T ss_pred EeCcEEEEEEECCH
Confidence 99999999988854
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.82 E-value=0.0044 Score=57.39 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=43.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHH
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQ 175 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~ 175 (376)
..++|+|. .|..+++.+|.++|++||+|.++.+..++. -||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-----~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-----LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-----EEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-----eEEEEEeCCHHHHHHHHh
Confidence 46789998 799999999999999999999998877653 599999999999997764
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.29 E-value=1.7 Score=40.95 Aligned_cols=57 Identities=12% Similarity=0.161 Sum_probs=46.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcC
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 179 (376)
....++|+ +|..+...+|.++|+.||.+ +|+.+.+. .|||.|.+.+.|..++..+..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 34567776 88889999999999999954 66655553 699999999999999998754
No 401
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=87.41 E-value=0.6 Score=34.79 Aligned_cols=69 Identities=14% Similarity=0.197 Sum_probs=44.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHHhcCCceEEE-Eeec--------CCCC-----CccceEEEEecCHHHHHHHHHHhcC
Q 017133 114 ETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVK-VIRN--------KQTG-----QSEGYGFVEFYSRAAAEKVLQSYSG 179 (376)
Q Consensus 114 ~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~-~~~~--------~~~g-----~~~g~afV~f~~~~~a~~a~~~l~~ 179 (376)
....|.|-+.|.+.+. .+.+.|++||.|.+-. +.++ +... .......|.|.+..+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 4567888888766554 6778999999886621 1110 0000 023467899999999999995 588
Q ss_pred CcCCC
Q 017133 180 SLMPN 184 (376)
Q Consensus 180 ~~~~~ 184 (376)
..+.+
T Consensus 84 ~ii~G 88 (132)
T 3p3d_A 84 AVFNG 88 (132)
T ss_dssp CEETT
T ss_pred eEeCc
Confidence 87743
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.15 E-value=1.7 Score=40.89 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=44.2
Q ss_pred CceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 017133 208 DLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (376)
Q Consensus 208 ~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~ 272 (376)
...++|+ +|..+...+|.++|+ .||.+ +|+.+-+ ..|||.|.+.+.|..+++.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs-~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFS-AFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGG-GGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHH-hcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4567776 999999999999995 99954 4544433 279999999999999999885
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=77.39 E-value=6.5 Score=25.94 Aligned_cols=69 Identities=6% Similarity=0.134 Sum_probs=42.2
Q ss_pred eEEEC-CCCCCCcHHHHHHHHhhhCC----CeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEe
Q 017133 210 SIFVG-DLAPDVTDSILQETFSSKYP----SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRID 284 (376)
Q Consensus 210 ~l~v~-nlp~~~t~~~l~~~F~~~~g----~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~ 284 (376)
+|+|. +--..+...+|..++.+..| .|-.|.+.- .+.||+.... .+..+++.|++..+.|+.+.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 45663 22456778888888864433 144455532 2788888765 5778889999999999999988
Q ss_pred ecC
Q 017133 285 VAT 287 (376)
Q Consensus 285 ~~~ 287 (376)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 404
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=70.73 E-value=15 Score=25.95 Aligned_cols=49 Identities=8% Similarity=0.216 Sum_probs=31.3
Q ss_pred CCCcHHHHHHHHhhhCCCeeE---E-EEEecCCCCCcceEEEEEeCCHHHHHHH
Q 017133 218 PDVTDSILQETFSSKYPSVKG---A-KVIIDSNTGRTKGYGFVRFGDENERSRA 267 (376)
Q Consensus 218 ~~~t~~~l~~~F~~~~g~i~~---v-~i~~~~~~~~~~g~afV~f~~~~~A~~A 267 (376)
.+.+..+|++.+++.|+.-.+ | .+...-..++++|||.| |++.+.|.+-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 667889999888776765222 2 22222234567788877 7887777655
No 405
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=65.88 E-value=16 Score=25.85 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=30.7
Q ss_pred CCCcHHHHHHHHhhhCCCeeE---E-EEEecCCCCCcceEEEEEeCCHHHHHH
Q 017133 218 PDVTDSILQETFSSKYPSVKG---A-KVIIDSNTGRTKGYGFVRFGDENERSR 266 (376)
Q Consensus 218 ~~~t~~~l~~~F~~~~g~i~~---v-~i~~~~~~~~~~g~afV~f~~~~~A~~ 266 (376)
.+.+..+|++.+++.|+.-.+ | .+...-..++++|||.| |++.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 677888998888766665222 2 22222234667788877 888877754
No 406
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=64.51 E-value=17 Score=25.93 Aligned_cols=49 Identities=12% Similarity=0.094 Sum_probs=31.2
Q ss_pred CCCcHHHHHHHHhhhCCCeeEEEE----EecCCCCCcceEEEEEeCCHHHHHHH
Q 017133 218 PDVTDSILQETFSSKYPSVKGAKV----IIDSNTGRTKGYGFVRFGDENERSRA 267 (376)
Q Consensus 218 ~~~t~~~l~~~F~~~~g~i~~v~i----~~~~~~~~~~g~afV~f~~~~~A~~A 267 (376)
.+.+..||++.+++.|+.-.++.+ ...-..++++|||.| |++.+.|.+-
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 467888998888766765222222 222234567788877 8888877654
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=59.82 E-value=38 Score=22.97 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=49.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHHhcCCceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhcC
Q 017133 112 NDETKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYSG 179 (376)
Q Consensus 112 ~~~~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~~ 179 (376)
....|-|.|-|+|..+-..++.-.....|--..|..+. |.|.+.|.+.++-..|+..|-+
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEE
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHh
Confidence 35678899999999999999988888888766676553 4699999999999999988744
No 408
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=57.66 E-value=38 Score=25.23 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=32.3
Q ss_pred CCCcHHHHHHHHhhhCCCeeEEEEE----ecCCCCCcceEEEEEeCCHHHHHHH
Q 017133 218 PDVTDSILQETFSSKYPSVKGAKVI----IDSNTGRTKGYGFVRFGDENERSRA 267 (376)
Q Consensus 218 ~~~t~~~l~~~F~~~~g~i~~v~i~----~~~~~~~~~g~afV~f~~~~~A~~A 267 (376)
.+.+..||++.+++.|+.-.++.++ ..-..+.+.|||.| |++.+.|.+-
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk~ 85 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKKF 85 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHhc
Confidence 4688999999998778753232222 22234567788887 8888877653
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=54.72 E-value=25 Score=27.43 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=32.1
Q ss_pred EEEEecCCC-C--------CCHHHHHhhh--ccCCCeEEEEeeC---CCeEEEEEeecC
Q 017133 329 TIFVGALDS-D--------VSDEDLREPF--SQFGEILSVKIPV---GKGCGFVQFANR 373 (376)
Q Consensus 329 ~l~V~nlp~-~--------~t~~~L~~~F--~~~G~i~~~~i~~---~~g~afV~F~~~ 373 (376)
.+.|.|+|. . .+..+|++.| +.|..+.-..+.- .+|+|+|.|.+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCC
Confidence 556668887 2 4467899977 9998766555543 358999999763
No 410
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=53.24 E-value=50 Score=22.37 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=43.5
Q ss_pred CCceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Q 017133 207 SDLSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMN 272 (376)
Q Consensus 207 ~~~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~ 272 (376)
.++-|.|-|+|..+-..++.-.. +..|--..|..+ .|.|+++|.+.++-..|+..|-
T Consensus 11 qnclikiinipqgtlkaevvlav-rhlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAV-RHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHH-HTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEee-hhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 34567888999998888877777 377765556543 2569999999999999998763
No 411
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=52.68 E-value=5.9 Score=27.87 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=28.8
Q ss_pred CCCcHHHHHHHHhhhCCCeeEEEEEecCC----CCCcceEEEEEeCCHHHHHHH
Q 017133 218 PDVTDSILQETFSSKYPSVKGAKVIIDSN----TGRTKGYGFVRFGDENERSRA 267 (376)
Q Consensus 218 ~~~t~~~l~~~F~~~~g~i~~v~i~~~~~----~~~~~g~afV~f~~~~~A~~A 267 (376)
.+.+..||++.+++.|+.-.++.++..-. .++++|||.| |++.+.|.+-
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 46788888888876666533333333222 3456677766 6666655543
No 412
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=49.18 E-value=33 Score=25.97 Aligned_cols=49 Identities=12% Similarity=0.325 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHhhhCCCeeEEEEEec----CCCCCcceEEEEEeCCHHHHHHH
Q 017133 218 PDVTDSILQETFSSKYPSVKGAKVIID----SNTGRTKGYGFVRFGDENERSRA 267 (376)
Q Consensus 218 ~~~t~~~l~~~F~~~~g~i~~v~i~~~----~~~~~~~g~afV~f~~~~~A~~A 267 (376)
.+.+..||++.+++.|+.-.++.++.. -..+.+.|||.| |++.+.|..-
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 467888999888766765233222221 223567788887 8888877654
No 413
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=47.12 E-value=66 Score=22.02 Aligned_cols=46 Identities=15% Similarity=0.277 Sum_probs=28.7
Q ss_pred CHHHHHHHHHh----cC-CceEEEEeecCCCCCccceEEEEecCHHHHHHHHHHhc
Q 017133 128 DETFLHNCFSH----TG-QVVNVKVIRNKQTGQSEGYGFVEFYSRAAAEKVLQSYS 178 (376)
Q Consensus 128 ~~~~l~~~f~~----~G-~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~a~~~l~ 178 (376)
.|..+...+.. .| .|.++.+.. ...||.||++...++...+++...
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCC
Confidence 35555544442 23 344554433 367999999999988887776443
No 414
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.89 E-value=54 Score=22.26 Aligned_cols=48 Identities=13% Similarity=0.322 Sum_probs=35.7
Q ss_pred EEEEecCCCCCCHHHHHhhhcc-CC-CeEEEEeeC---CCeEEEEEeecCCCC
Q 017133 329 TIFVGALDSDVSDEDLREPFSQ-FG-EILSVKIPV---GKGCGFVQFANRLVS 376 (376)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~-~G-~i~~~~i~~---~~g~afV~F~~~e~~ 376 (376)
.-++.-++.+.+.-+|++.++. |+ .|..|..+. +..-|+|++....+|
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a 76 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSA 76 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcH
Confidence 3456678889999999998887 66 777876543 456799998766553
No 415
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=33.14 E-value=67 Score=21.74 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=34.7
Q ss_pred EEEecCCCCCCHHHHHhhhcc-CC-CeEEEEeeC---CCeEEEEEeecCCC
Q 017133 330 IFVGALDSDVSDEDLREPFSQ-FG-EILSVKIPV---GKGCGFVQFANRLV 375 (376)
Q Consensus 330 l~V~nlp~~~t~~~L~~~F~~-~G-~i~~~~i~~---~~g~afV~F~~~e~ 375 (376)
-++..++.+.+.-+|++.++. || .|..|..+. +..-|+|++....+
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~ 74 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDD 74 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSC
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCc
Confidence 456678899999999998877 66 777876543 44689999876554
No 416
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=28.49 E-value=51 Score=21.82 Aligned_cols=59 Identities=12% Similarity=0.204 Sum_probs=36.8
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCcc---eEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcE
Q 017133 253 YGFVRFGDENERSRAMTEMNGVYCSSRP---MRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNAT 329 (376)
Q Consensus 253 ~afV~f~~~~~A~~Al~~l~g~~~~g~~---i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (376)
|.++.|....++.+-|+. ...+.... +.|+...++... +
T Consensus 7 Yvl~~~~a~~~~i~Eler--~~rine~VlR~l~vr~d~~r~YE------------------------------------~ 48 (77)
T 3zzp_A 7 TTWYQVEMPEDRVNDLAR--ELRIRDNVRRVMVVASTTPGRYE------------------------------------V 48 (77)
T ss_dssp EEEEEEECCHHHHHHHHH--HHHTSTTEEEEEEEECSSTTEEE------------------------------------E
T ss_pred EEEEEEEeCHhHHHHHHH--HhCCCHHHHHHHHHhccCCCceE------------------------------------E
Confidence 899999887766666653 23344444 444443333222 6
Q ss_pred EEEecCCCCCCHHHHHhhhccC
Q 017133 330 IFVGALDSDVSDEDLREPFSQF 351 (376)
Q Consensus 330 l~V~nlp~~~t~~~L~~~F~~~ 351 (376)
+|| |.++++++++....+.|
T Consensus 49 m~I--l~P~l~ee~~~~~vek~ 68 (77)
T 3zzp_A 49 NIV--LNPNLDQSQLQNEKEII 68 (77)
T ss_dssp EEE--ECTTCCHHHHHHHHHHH
T ss_pred EEE--ECCCCCHHHHHHHHHHH
Confidence 676 67788888888777665
No 417
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=28.43 E-value=1e+02 Score=18.74 Aligned_cols=44 Identities=7% Similarity=0.191 Sum_probs=33.8
Q ss_pred cEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCCCeEEEEEee
Q 017133 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFA 371 (376)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~g~afV~F~ 371 (376)
.++.|.+|.-.--...|.+.+.....|.++.+--..+.+.|.|.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~ 47 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYH 47 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEEC
Confidence 35777788777667778888888877888888777778888883
No 418
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=25.77 E-value=23 Score=26.45 Aligned_cols=48 Identities=15% Similarity=0.434 Sum_probs=31.4
Q ss_pred CCCcHHHHHHHHhhhCCC-eeEEEEEec----CCCCCcceEEEEEeCCHHHHHH
Q 017133 218 PDVTDSILQETFSSKYPS-VKGAKVIID----SNTGRTKGYGFVRFGDENERSR 266 (376)
Q Consensus 218 ~~~t~~~l~~~F~~~~g~-i~~v~i~~~----~~~~~~~g~afV~f~~~~~A~~ 266 (376)
..++..||++.++..|+. -.++.++.. -..+.+.|||.| |++.+.|.+
T Consensus 38 aTpsk~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~I-Yds~d~aKk 90 (138)
T 3iz6_U 38 ANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLI-YDNLDAAKK 90 (138)
T ss_dssp CCCCSHHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCC-SSCHHHHHS
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 367889999999877775 333333322 124667888887 888777654
No 419
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.18 E-value=1.8e+02 Score=22.64 Aligned_cols=51 Identities=12% Similarity=0.241 Sum_probs=35.0
Q ss_pred eEEECCCCC-C--------CcHHHHHHHH--hhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Q 017133 210 SIFVGDLAP-D--------VTDSILQETF--SSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENER 264 (376)
Q Consensus 210 ~l~v~nlp~-~--------~t~~~l~~~F--~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 264 (376)
.+.|-|+|. . ....+|++.| + .|..+. +..+.+.. -..|++.|.|.+.-.-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~-~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILR-GFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHT-TCCCSE-EEEEECSS--BEEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhc-CCCCce-eEecccCC--CCceeEEEEecCChHH
Confidence 456667775 1 3457899866 6 788765 66666543 4678999999986643
No 420
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=28.44 E-value=18 Score=25.81 Aligned_cols=62 Identities=11% Similarity=0.035 Sum_probs=35.4
Q ss_pred ceEEECCCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcc-eEEEEEeCCHHHHHHHHHHhCCce
Q 017133 209 LSIFVGDLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTK-GYGFVRFGDENERSRAMTEMNGVY 275 (376)
Q Consensus 209 ~~l~v~nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~-g~afV~f~~~~~A~~Al~~l~g~~ 275 (376)
.+|-|... .++++|..+. +..+ +..+.+.+...+|+.. -.-|=.|.+.++|.+|++.|-...
T Consensus 26 YTLQL~a~---~~~~~l~~f~-~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 26 YTLQLSSS---SNYDNLNGWA-KKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 34444433 3456676766 3665 4445554433333332 122338999999999999876433
No 421
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=22.53 E-value=73 Score=26.91 Aligned_cols=32 Identities=6% Similarity=0.216 Sum_probs=25.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHHhcCCceEEEE
Q 017133 115 TKTIWIGDLFHWMDETFLHNCFSHTGQVVNVKV 147 (376)
Q Consensus 115 ~~~v~v~nLp~~~~~~~l~~~f~~~G~v~~~~~ 147 (376)
...+.|+|||+.++..-|..++.. ..+..+.+
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 357899999999999999999987 55544433
No 422
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=22.48 E-value=1.1e+02 Score=18.94 Aligned_cols=45 Identities=7% Similarity=0.133 Sum_probs=32.8
Q ss_pred cEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCCCeEEEEEeec
Q 017133 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN 372 (376)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~g~afV~F~~ 372 (376)
.++.|.++.-.-=...|.+.+.....|.++.+--..+.+.|.|+.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~ 48 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDP 48 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECT
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECC
Confidence 357777777766667788888887778877776666777888764
No 423
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=22.01 E-value=43 Score=23.34 Aligned_cols=71 Identities=10% Similarity=0.132 Sum_probs=42.5
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCCCcCchhhhchhhhhhhcCCCCCCCCCcCCCCCCCCCCCcEEEE
Q 017133 253 YGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGYQQQYSSQALVLAGGPGSNGARVQGSQSDGESNNATIFV 332 (376)
Q Consensus 253 ~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V 332 (376)
|+++.|+...++.+-++. ...|....|+.-....+.- ..--+++|
T Consensus 7 Y~~~~~~a~~~~v~eler--~~r~~e~vlR~l~v~~e~M---------------------------------r~YE~m~I 51 (96)
T 2kjw_A 7 FLWYQVEMPEDRVNDLAR--ELRIRDNVRRVMVVASTTP---------------------------------GRYEVNIV 51 (96)
T ss_dssp CEEECCCCCHHHHHHHHH--HHHHCTTCSEEEEEECSSS---------------------------------SCEEEEEE
T ss_pred EEEEEeecChhHHHHHHH--Hhccchhhhhhhheehhhh---------------------------------hhhheeee
Confidence 789999998888777763 1233343333333222210 01236777
Q ss_pred ecCCCCCCHHHHHhhhccC--------CCeEEEEee
Q 017133 333 GALDSDVSDEDLREPFSQF--------GEILSVKIP 360 (376)
Q Consensus 333 ~nlp~~~t~~~L~~~F~~~--------G~i~~~~i~ 360 (376)
|.++++++++..+.+.| |.|..+...
T Consensus 52 --l~P~l~ee~~~~~ve~~~~iI~~~gG~i~~ve~W 85 (96)
T 2kjw_A 52 --LNPNLDQSQLALEKEIIQRALENYGARVEKVEEL 85 (96)
T ss_dssp --CCSSCCHHHHHHHHHHHHHHHHHHTCCCSCCEEC
T ss_pred --eCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 78889888887766665 577766654
No 424
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=21.91 E-value=1.3e+02 Score=17.74 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=33.6
Q ss_pred EEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCCCeEEEEEeec
Q 017133 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN 372 (376)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~g~afV~F~~ 372 (376)
++.|.++.-..-...|.+.+.....|.++.+--..+.+.|.|+.
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 46 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDE 46 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECC
Confidence 57777887776667788888887778888877767888888864
No 425
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=21.42 E-value=1.2e+02 Score=22.73 Aligned_cols=48 Identities=15% Similarity=0.327 Sum_probs=35.2
Q ss_pred EEEEecCCCCCCHHHHHhhhcc-CC-CeEEEEeeC---CCeEEEEEeecCCCC
Q 017133 329 TIFVGALDSDVSDEDLREPFSQ-FG-EILSVKIPV---GKGCGFVQFANRLVS 376 (376)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~-~G-~i~~~~i~~---~~g~afV~F~~~e~~ 376 (376)
.-++.-++.+.+.-+|++.++. |+ .|..|..+. +..-|||++....+|
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~da 132 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDA 132 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcH
Confidence 3566678889999999988877 56 788876543 446799998766543
No 426
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=21.37 E-value=1.4e+02 Score=17.82 Aligned_cols=45 Identities=4% Similarity=0.158 Sum_probs=34.0
Q ss_pred cEEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCCCeEEEEEeec
Q 017133 328 ATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN 372 (376)
Q Consensus 328 ~~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~g~afV~F~~ 372 (376)
.++.|.++.-..-...|...+.....|.++.+--..+.+.|.|+.
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 49 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHG 49 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC-
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECC
Confidence 357788887765567788888888778888887777888888863
No 427
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=20.81 E-value=1.5e+02 Score=17.83 Aligned_cols=44 Identities=14% Similarity=0.239 Sum_probs=34.3
Q ss_pred EEEEecCCCCCCHHHHHhhhccCCCeEEEEeeCCCeEEEEEeec
Q 017133 329 TIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFAN 372 (376)
Q Consensus 329 ~l~V~nlp~~~t~~~L~~~F~~~G~i~~~~i~~~~g~afV~F~~ 372 (376)
++.|.++.-..-...|...+.....|.++.+--..+.+.|.|+.
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 49 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDD 49 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEET
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECC
Confidence 56777777776667788888888778888887777888888864
No 428
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=20.53 E-value=1.2e+02 Score=21.16 Aligned_cols=66 Identities=6% Similarity=0.074 Sum_probs=47.7
Q ss_pred CCCCCCcHHHHHHHHhhhCCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCceecCcceEEeecCCC
Q 017133 215 DLAPDVTDSILQETFSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK 289 (376)
Q Consensus 215 nlp~~~t~~~l~~~F~~~~g~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Al~~l~g~~~~g~~i~v~~~~~~ 289 (376)
.++..+.-+||..-..+.||.-..+... +. ...|-..+.+|-.+|++.|+.. -.-+.++|-...++
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVING 88 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCC
Confidence 4677888899988777788987777655 22 3789999999999999987643 23345666555544
No 429
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=20.07 E-value=1.4e+02 Score=22.61 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=34.4
Q ss_pred EEEecCCCCCCHHHHHhhhcc-CC-CeEEEEeeC---CCeEEEEEeecCCCC
Q 017133 330 IFVGALDSDVSDEDLREPFSQ-FG-EILSVKIPV---GKGCGFVQFANRLVS 376 (376)
Q Consensus 330 l~V~nlp~~~t~~~L~~~F~~-~G-~i~~~~i~~---~~g~afV~F~~~e~~ 376 (376)
-++.-++.+.+.-+|++.++. |+ .|..|..+. +..-|||++....+|
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dA 140 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDS 140 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcH
Confidence 455667888999999988877 56 778876543 346799998765543
No 430
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.01 E-value=74 Score=20.27 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=15.4
Q ss_pred CCeEEEEeeCCCeEEEEEeecCC
Q 017133 352 GEILSVKIPVGKGCGFVQFANRL 374 (376)
Q Consensus 352 G~i~~~~i~~~~g~afV~F~~~e 374 (376)
|+|..|. ..+..|+|.|.|..
T Consensus 28 GtV~kV~--~~~~~ClV~FeD~s 48 (68)
T 2e5p_A 28 GTIKKVD--SAREVCLVQFEDDS 48 (68)
T ss_dssp EEEEEEE--TTTTEEEEEETTTE
T ss_pred eEEEEEe--cCCcEEEEEEccCC
Confidence 6666665 45789999998753
Done!