BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017136
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 296 bits (759), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 154/337 (45%), Positives = 210/337 (62%), Gaps = 9/337 (2%)
Query: 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFN 60
MD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+
Sbjct: 443 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFH 502
Query: 61 IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 120
IIV GLDSI AR +IN + S L YE D +I P++DGGTEGFKG+ARVI+PG+T
Sbjct: 503 IIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTA 561
Query: 121 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQ 177
C ECT+ L+PPQV FP+CT+A PR HCIEY +++W + G D DDPEH+Q
Sbjct: 562 CIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQ 621
Query: 178 WVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTL 237
W++ ++++RA + I GVTY LTQGVVK CA E KIA+ L
Sbjct: 622 WIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPL 681
Query: 238 SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAK 296
+NYL +N V GL+ E + ++C C I+ S L++ ++ L LQ+
Sbjct: 682 NNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKS 741
Query: 297 ASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 329
++ T GKN LY+Q+ +EE TR NLS L +L
Sbjct: 742 PAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 778
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 296 bits (758), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 154/337 (45%), Positives = 210/337 (62%), Gaps = 9/337 (2%)
Query: 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFN 60
MD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+
Sbjct: 72 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFH 131
Query: 61 IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 120
IIV GLDSI AR +IN + S L YE D +I P++DGGTEGFKG+ARVI+PG+T
Sbjct: 132 IIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTA 190
Query: 121 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQ 177
C ECT+ L+PPQV FP+CT+A PR HCIEY +++W + G D DDPEH+Q
Sbjct: 191 CIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQ 250
Query: 178 WVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTL 237
W++ ++++RA + I GVTY LTQGVVK CA E KIA+ L
Sbjct: 251 WIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPL 310
Query: 238 SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAK 296
+NYL +N V GL+ E + ++C C I+ S L++ ++ L LQ+
Sbjct: 311 NNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKS 370
Query: 297 ASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 329
++ T GKN LY+Q+ +EE TR NLS L +L
Sbjct: 371 PAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 407
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 296 bits (757), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/337 (45%), Positives = 210/337 (62%), Gaps = 9/337 (2%)
Query: 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFN 60
MD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+
Sbjct: 101 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFH 160
Query: 61 IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 120
IIV GLDSI AR +IN + S L YE D +I P++DGGTEGFKG+ARVI+PG+T
Sbjct: 161 IIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTA 219
Query: 121 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQ 177
C ECT+ L+PPQV FP+CT+A PR HCIEY +++W + G D DDPEH+Q
Sbjct: 220 CIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQ 279
Query: 178 WVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTL 237
W++ ++++RA + I GVTY LTQGVVK CA E KIA+ L
Sbjct: 280 WIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPL 339
Query: 238 SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAK 296
+NYL +N V GL+ E + ++C C I+ S L++ ++ L LQ+
Sbjct: 340 NNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKS 399
Query: 297 ASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 329
++ T GKN LY+Q+ +EE TR NLS L +L
Sbjct: 400 PAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 436
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 295 bits (756), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/337 (45%), Positives = 210/337 (62%), Gaps = 9/337 (2%)
Query: 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFN 60
MD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+
Sbjct: 82 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFH 141
Query: 61 IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 120
IIV GLDSI AR +IN + S L YE D +I P++DGGTEGFKG+ARVI+PG+T
Sbjct: 142 IIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTA 200
Query: 121 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQ 177
C ECT+ L+PPQV FP+CT+A PR HCIEY +++W + G D DDPEH+Q
Sbjct: 201 CIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQ 260
Query: 178 WVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTL 237
W++ ++++RA + I GVTY LTQGVVK CA E KIA+ L
Sbjct: 261 WIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPL 320
Query: 238 SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAK 296
+NYL +N V GL+ E + ++C C I+ S L++ ++ L LQ+
Sbjct: 321 NNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKS 380
Query: 297 ASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 329
++ T GKN LY+Q+ +EE TR NLS L +L
Sbjct: 381 PAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 417
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 293 bits (749), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/337 (45%), Positives = 209/337 (62%), Gaps = 9/337 (2%)
Query: 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFN 60
MD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+
Sbjct: 72 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFH 131
Query: 61 IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 120
IIV GLDSI AR +IN + S L YE D +I P++DGGTEGFKG+ARVI+PG+T
Sbjct: 132 IIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTA 190
Query: 121 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQ 177
C ECT+ L+PPQV FP+ T+A PR HCIEY +++W + G D DDPEH+Q
Sbjct: 191 CIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQ 250
Query: 178 WVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTL 237
W++ ++++RA + I GVTY LTQGVVK CA E KIA+ L
Sbjct: 251 WIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPL 310
Query: 238 SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAK 296
+NYL +N V GL+ E + ++C C I+ S L++ ++ L LQ+
Sbjct: 311 NNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKS 370
Query: 297 ASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 329
++ T GKN LY+Q+ +EE TR NLS L +L
Sbjct: 371 PAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 407
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 293 bits (749), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 153/337 (45%), Positives = 209/337 (62%), Gaps = 9/337 (2%)
Query: 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFN 60
MD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+
Sbjct: 69 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFH 128
Query: 61 IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 120
IIV GLDSI AR +IN + S L YE D +I P++DGGTEGFKG+ARVI+PG+T
Sbjct: 129 IIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTA 187
Query: 121 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQ 177
C ECT+ L+PPQV FP+ T+A PR HCIEY +++W + G D DDPEH+Q
Sbjct: 188 CIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQ 247
Query: 178 WVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTL 237
W++ ++++RA + I GVTY LTQGVVK CA E KIA+ L
Sbjct: 248 WIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPL 307
Query: 238 SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAK 296
+NYL +N V GL+ E + ++C C I+ S L++ ++ L LQ+
Sbjct: 308 NNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKS 367
Query: 297 ASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 329
++ T GKN LY+Q+ +EE TR NLS L +L
Sbjct: 368 PAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 404
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 291 bits (745), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 209/337 (62%), Gaps = 9/337 (2%)
Query: 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFN 60
MD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+
Sbjct: 72 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFH 131
Query: 61 IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 120
IIV GLDSI AR +IN + S L YE D +I P++DGGTEGFKG+A+VI+PG+T
Sbjct: 132 IIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNAQVILPGMTA 190
Query: 121 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQ 177
C ECT+ L+PPQV FP+ T+A PR HCIEY +++W + G D DDPEH+Q
Sbjct: 191 CIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQ 250
Query: 178 WVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTL 237
W++ ++++RA + I GVTY LTQGVVK CA E KIA+ L
Sbjct: 251 WIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPL 310
Query: 238 SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAK 296
+NYL +N V GL+ E + ++C C I+ S L++ ++ L LQ+
Sbjct: 311 NNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKS 370
Query: 297 ASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 329
++ T GKN LY+Q+ +EE TR NLS L +L
Sbjct: 371 PAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 407
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 290 bits (742), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 208/337 (61%), Gaps = 9/337 (2%)
Query: 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFN 60
MD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV N+VPHF +I+D + +FY F+
Sbjct: 72 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFH 131
Query: 61 IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 120
IIV GLDSI AR +IN + S L YE D +I P++DGGTEGFKG+A VI+PG+T
Sbjct: 132 IIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNAAVILPGMTA 190
Query: 121 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQ 177
C ECT+ L+PPQV FP+ T+A PR HCIEY +++W + G D DDPEH+Q
Sbjct: 191 CIECTLELYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQ 250
Query: 178 WVYSEAVKRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTL 237
W++ ++++RA + I GVTY LTQGVVK CA E KIA+ L
Sbjct: 251 WIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPL 310
Query: 238 SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAK 296
+NYL +N V GL+ E + ++C C I+ S L++ ++ L LQ+
Sbjct: 311 NNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKS 370
Query: 297 ASV--TYRGKN--LYMQAPPVLEEMTRSNLSLPLYDL 329
++ T GKN LY+Q+ +EE TR NLS L +L
Sbjct: 371 PAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKEL 407
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 23/194 (11%)
Query: 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI--EDKDISFYND 58
+D I+VSNLNRQFLF+ + VG+ KA+VA + V++ NIV + I D ++ F+
Sbjct: 51 LDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQ 110
Query: 59 FNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGV 118
F +++ LD+ AR+++N + + P+++ GT G+ G I GV
Sbjct: 111 FILVMNALDNRAARNHVNRMCLA-------------ADVPLIESGTAGYLGQVTTIKKGV 157
Query: 119 TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI---KWDEVHSGKSFDPD--DP 173
T C+EC P Q FP CT+ TP HCI +A + + E + + PD DP
Sbjct: 158 TECYECHP--KPTQRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADP 215
Query: 174 EHMQWVYSEAVKRA 187
E W +EA RA
Sbjct: 216 E-AAWEPTEAEARA 228
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 23/194 (11%)
Query: 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI--EDKDISFYND 58
+D I+VSNLNRQFLF+ + VG+ KA+VA + V++ NIV + I D ++ F+
Sbjct: 69 LDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQ 128
Query: 59 FNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGV 118
F +++ LD+ AR+++N + + P+++ GT G+ G I GV
Sbjct: 129 FILVMNALDNRAARNHVNRMCLA-------------ADVPLIESGTAGYLGQVTTIKKGV 175
Query: 119 TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI---KWDEVHSGKSFDPD--DP 173
T C+EC P Q FP CT+ TP HCI +A + + E + + PD DP
Sbjct: 176 TECYECHPK--PTQRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADP 233
Query: 174 EHMQWVYSEAVKRA 187
E W +EA RA
Sbjct: 234 E-AAWEPTEAEARA 246
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 99/194 (51%), Gaps = 23/194 (11%)
Query: 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI--EDKDISFYND 58
+D I+VSNLNRQFLF+ + VG+ KA+VA + V++ NIV + I D ++ F+
Sbjct: 49 LDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQ 108
Query: 59 FNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGV 118
F +++ LD+ AR+++N + + P+++ GT G+ G I GV
Sbjct: 109 FILVMNALDNRAARNHVNRMCLA-------------ADVPLIESGTAGYLGQVTTIKKGV 155
Query: 119 TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI---KWDEVHSGKSFDPD--DP 173
T C+EC P Q FP T+ TP HCI +A + + E + + PD DP
Sbjct: 156 TECYECHP--KPTQRTFPGATIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADP 213
Query: 174 EHMQWVYSEAVKRA 187
E W +EA RA
Sbjct: 214 E-AAWEPTEAEARA 226
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 84/162 (51%), Gaps = 22/162 (13%)
Query: 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVA--AKRVMERVSGVNIVPHFCRI--EDKDI--- 53
MD IE SNLNRQFLFR DVGK K+E A A +M I + R+ E + I
Sbjct: 453 MDSIEKSNLNRQFLFRPRDVGKLKSECASTAVSIMNPSLTGKITSYQERVGPESEGIFGD 512
Query: 54 SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARV 113
F+ +++ LD++EAR Y++ C F E KP+++ GT G KG+ +V
Sbjct: 513 EFFEKLSLVTNALDNVEARMYVDR-RCVFFE------------KPLLESGTLGTKGNTQV 559
Query: 114 IIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAH 155
++P +T + + PP+ FP+CTL P H I +A
Sbjct: 560 VVPHLTESYGSS--QDPPEKSFPICTLKNFPNRIEHTIAWAR 599
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/160 (36%), Positives = 84/160 (52%), Gaps = 22/160 (13%)
Query: 2 DRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVM----ERVSGVNIVPHFCRIEDKDI---S 54
D IE SNLNRQFLFR +DVGK K+EVAA+ V + +N E ++I S
Sbjct: 463 DSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDS 522
Query: 55 FYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVI 114
F+ + + LD+++AR+Y++ C F KP+++ GT G KG+ +VI
Sbjct: 523 FWESLDFVTNALDNVDARTYVDR-RCVFYR------------KPLLESGTLGTKGNTQVI 569
Query: 115 IPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYA 154
IP +T + + PP+ PLCTL P H I +A
Sbjct: 570 IPRLTESYSSS--RDPPEKSIPLCTLRSFPNKIDHTIAWA 607
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 2 DRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDI-SFYNDFN 60
D + +SNL RQ LF ED+ +PK++V+ +R+ + + + R+ + + +
Sbjct: 63 DDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARAD 122
Query: 61 IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII-PGVT 119
+++ D++ R INA AC L P++ GF G V+ P
Sbjct: 123 VVLDCTDNMATRQEINA-ACVALN------------TPLITASAVGFGGQLMVLTPPWEQ 169
Query: 120 PCFECTIW 127
C+ C +W
Sbjct: 170 GCYRC-LW 176
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 16/128 (12%)
Query: 2 DRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDI-SFYNDFN 60
D + +SNL RQ LF ED+ +PK++V+ +R+ + + + R+ + + +
Sbjct: 61 DDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARAD 120
Query: 61 IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII-PGVT 119
+++ D++ R INA AC L P++ GF G V+ P
Sbjct: 121 VVLDCTDNMATRQEINA-ACVALN------------TPLITASAVGFGGQLMVLTPPWEQ 167
Query: 120 PCFECTIW 127
C+ C +W
Sbjct: 168 GCYRC-LW 174
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 2 DRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNI 61
D+IE +NL RQ LF +DVGK K EV + +++R S +++ I D Y D +
Sbjct: 148 DQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNIND-----YTDLHK 202
Query: 62 IVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG-TEGFKGHARVIIPGVTP 120
+ EA ++ + F +K +P ++ G + +PG T
Sbjct: 203 VP------EADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVNDIAVFGPLYVPGKTG 256
Query: 121 CFEC 124
C+EC
Sbjct: 257 CYEC 260
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 2 DRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNI 61
D+IE +NL RQ LF +DVGK K EV + +++R S +++ I D Y D +
Sbjct: 151 DQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNIND-----YTDLHK 205
Query: 62 IVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG-TEGFKGHARVIIPGVTP 120
+ EA ++ + F +K +P ++ G + +PG T
Sbjct: 206 VP------EADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVNDIAVFGPLYVPGKTG 259
Query: 121 CFEC 124
C+EC
Sbjct: 260 CYEC 263
>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3GUC|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3H8V|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
pdb|3H8V|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
Length = 292
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 29/145 (20%)
Query: 2 DRIEVSNLNRQFLFRMEDVGKPKAEVAAKR-------VMERVSGVNIV-----PHFC-RI 48
D++E++N+NR F F+ G K + A V+ V NI HF RI
Sbjct: 69 DKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRI 127
Query: 49 EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFK 108
+ + ++++ +D+ EAR IN AC+ L + E
Sbjct: 128 SNGGLEEGKPVDLVLSCVDNFEARMTIN-TACNELGQTWMESGVSEN----------AVS 176
Query: 109 GHARVIIPGVTPCFECTIWLFPPQV 133
GH ++IIPG + CF C PP V
Sbjct: 177 GHIQLIIPGESACFACA----PPLV 197
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 17/131 (12%)
Query: 2 DRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS-GVNIVPHFCRIEDKDI-SFYNDF 59
D + +SNL RQ L VG+PK E +A+ + R++ + I P ++D ++ + +
Sbjct: 64 DTVSLSNLQRQTLHSDATVGQPKVE-SARDALTRINPHIAITPVNALLDDAELAALIAEH 122
Query: 60 NIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII-PGV 118
++++ D++ R+ +NA C + P+V G +G V
Sbjct: 123 DLVLDCTDNVAVRNQLNA-GCFAAKV------------PLVSGAAIRMEGQITVFTYQDG 169
Query: 119 TPCFECTIWLF 129
PC+ C LF
Sbjct: 170 EPCYRCLSRLF 180
>pdb|2LQ7|A Chain A, E2 Binding Surface On Uba3 Beta-Grasp Domain Undergoes A
Conformational Transition
Length = 97
Score = 35.4 bits (80), Expect = 0.046, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 271 IELDTSVTLEKFINLLEEHPKLQLAKASVT--YRGKN--LYMQAPPVLEEMTRSNLSLPL 326
I+ S L++ ++ L LQ+ ++T GKN LY+Q+ +EE TR NLS L
Sbjct: 8 IQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTL 67
Query: 327 YDL 329
+L
Sbjct: 68 KEL 70
>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex
Length = 340
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 4 IEVSNLNRQFLFRMEDVGKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYN 57
+ SN RQ L+ ED GKPKAE+AA KR+ + +GV + +P + + +
Sbjct: 69 VSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLXDATGVKLSIPXIGHKLVNEEAQHK 128
Query: 58 DF----------NIIVLGLDSIEAR 72
DF +II L +DS E+R
Sbjct: 129 DFDRLRALIKEHDIIFLLVDSRESR 153
>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2
Architecture And Mechanism In The Autophagy Pathway
Length = 344
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 4 IEVSNLNRQFLFRMEDVGKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYN 57
+ SN RQ L+ ED GKPKAE+AA KR+ + +GV + +P + + +
Sbjct: 73 VSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHK 132
Query: 58 DF----------NIIVLGLDSIEAR 72
DF +II L +DS E+R
Sbjct: 133 DFDRLRALIKEHDIIFLLVDSRESR 157
>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex
pdb|3VH4|A Chain A, Crystal Structure Of Atg7ctd-Atg8-Mgatp Complex
Length = 340
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 4 IEVSNLNRQFLFRMEDVGKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYN 57
+ SN RQ L+ ED GKPKAE+AA KR+ + +GV + +P + + +
Sbjct: 69 VSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHK 128
Query: 58 DF----------NIIVLGLDSIEAR 72
DF +II L +DS E+R
Sbjct: 129 DFDRLRALIKEHDIIFLLVDSRESR 153
>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
pdb|4GSK|B Chain B, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex
Length = 615
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 4 IEVSNLNRQFLFRMEDVGKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYN 57
+ SN RQ L+ ED GKPKAE+AA KR+ + +GV + +P + + +
Sbjct: 361 VSYSNPVRQALYNFEDAGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHK 420
Query: 58 DF----------NIIVLGLDSIEAR 72
DF +II L +DS E+R
Sbjct: 421 DFDRLRALIKEHDIIFLLVDSRESR 445
>pdb|1Y8X|B Chain B, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
pdb|3FN1|A Chain A, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity
To Cullin Modification
Length = 98
Score = 33.1 bits (74), Expect = 0.24, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 271 IELDTSVTLEKFINLLEEHPKLQLAKASVT--YRGKN--LYMQAPPVLEEMTRSNLSLPL 326
I+ S L++ ++ L LQ ++T GKN LY Q+ +EE TR NLS L
Sbjct: 9 IQFSPSAKLQEVLDYLTNSASLQXKSPAITATLEGKNRTLYXQSVTSIEERTRPNLSKTL 68
Query: 327 YDL 329
+L
Sbjct: 69 KEL 71
>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613)
Length = 616
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 4 IEVSNLNRQFLFRMEDVGKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYN 57
+ SN RQ L+ ED GKPKAE+AA KR+ + +GV + +P + + +
Sbjct: 362 VSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHK 421
Query: 58 DF----------NIIVLGLDSIEAR 72
DF +II L +DS E+R
Sbjct: 422 DFDRLRALIKEHDIIFLLVDSRESR 446
>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595)
Length = 598
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 4 IEVSNLNRQFLFRMEDVGKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYN 57
+ SN RQ L+ ED GKPKAE+AA KR+ + +GV + +P + + +
Sbjct: 362 VSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHK 421
Query: 58 DF----------NIIVLGLDSIEAR 72
DF +II L +DS E+R
Sbjct: 422 DFDRLRALIKEHDIIFLLVDSRESR 446
>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
pdb|4GSL|B Chain B, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex
Length = 615
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 4 IEVSNLNRQFLFRMEDVGKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYN 57
+ SN RQ L+ ED GKPKAE+AA KR+ + +GV + +P + + +
Sbjct: 361 VSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHK 420
Query: 58 DF----------NIIVLGLDSIEAR 72
DF +II L +DS E+R
Sbjct: 421 DFDRLRALIKEHDIIFLLVDSRESR 445
>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
Length = 217
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 132 QVKFPLCTLAETPRTAAHCIEYAHLI---KWDEVHSGKSFDPD--DPEHMQWVYSEAVKR 186
Q FP CT+ TP HCI +A + + E + + PD DPE W +EA R
Sbjct: 2 QRTFPGCTIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEAR 60
Query: 187 A 187
A
Sbjct: 61 A 61
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 12 QFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVL 64
QFL R VG+ +AE + +R V++ IE K SF+ F+ + L
Sbjct: 79 QFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCL 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,010,616
Number of Sequences: 62578
Number of extensions: 453784
Number of successful extensions: 932
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 37
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)