Query 017136
Match_columns 376
No_of_seqs 289 out of 2125
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:55:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2015 NEDD8-activating compl 100.0 4.5E-80 9.9E-85 572.0 23.1 347 1-361 72-421 (422)
2 cd01488 Uba3_RUB Ubiquitin act 100.0 8.9E-69 1.9E-73 508.6 22.0 261 1-266 31-291 (291)
3 KOG2013 SMT3/SUMO-activating c 100.0 5.3E-69 1.1E-73 519.8 15.9 329 1-364 44-524 (603)
4 cd01490 Ube1_repeat2 Ubiquitin 100.0 2.6E-64 5.7E-69 499.6 26.3 294 1-312 36-427 (435)
5 TIGR01408 Ube1 ubiquitin-activ 100.0 8.2E-62 1.8E-66 524.9 27.6 311 1-334 456-973 (1008)
6 KOG2012 Ubiquitin activating e 100.0 2.8E-61 6E-66 489.6 16.8 326 1-362 467-995 (1013)
7 cd01489 Uba2_SUMO Ubiquitin ac 100.0 4.4E-60 9.5E-65 453.7 20.0 250 1-265 31-312 (312)
8 cd01484 E1-2_like Ubiquitin ac 100.0 1.3E-58 2.7E-63 428.3 18.7 201 1-227 31-234 (234)
9 TIGR02355 moeB molybdopterin s 100.0 1.2E-33 2.5E-38 263.6 17.1 182 1-265 56-240 (240)
10 PRK07411 hypothetical protein; 100.0 2E-33 4.3E-38 279.3 17.1 186 1-267 70-257 (390)
11 PRK05690 molybdopterin biosynt 100.0 1.4E-32 3E-37 257.3 17.3 179 1-262 64-245 (245)
12 PRK05597 molybdopterin biosynt 100.0 8.8E-33 1.9E-37 271.7 16.6 183 1-264 60-244 (355)
13 PRK05600 thiamine biosynthesis 100.0 1.8E-32 3.9E-37 270.3 18.3 206 1-288 73-284 (370)
14 PRK08762 molybdopterin biosynt 100.0 3.3E-32 7.2E-37 270.0 17.7 186 1-267 167-358 (376)
15 PRK12475 thiamine/molybdopteri 100.0 2.8E-32 6.2E-37 266.0 16.7 184 1-267 56-245 (338)
16 PRK08223 hypothetical protein; 100.0 1E-31 2.3E-36 253.7 17.2 185 1-250 59-259 (287)
17 PRK07878 molybdopterin biosynt 100.0 1.4E-31 3E-36 266.6 18.4 183 1-264 74-262 (392)
18 PRK07688 thiamine/molybdopteri 100.0 3.1E-31 6.8E-36 258.8 17.0 184 1-267 56-245 (339)
19 KOG2017 Molybdopterin synthase 100.0 1.6E-31 3.4E-36 251.0 10.9 186 1-267 98-286 (427)
20 cd01491 Ube1_repeat1 Ubiquitin 100.0 5.6E-31 1.2E-35 249.9 13.6 223 1-250 51-283 (286)
21 TIGR02356 adenyl_thiF thiazole 100.0 3.7E-30 8.1E-35 234.4 13.8 115 1-128 53-169 (202)
22 cd00757 ThiF_MoeB_HesA_family 100.0 9.4E-30 2E-34 236.0 16.6 167 1-248 53-221 (228)
23 PRK08328 hypothetical protein; 100.0 9.1E-30 2E-34 236.3 15.3 163 1-248 59-224 (231)
24 COG0476 ThiF Dinucleotide-util 100.0 1.9E-28 4.2E-33 230.8 15.0 186 1-266 62-253 (254)
25 TIGR03603 cyclo_dehy_ocin bact 100.0 3.7E-28 8E-33 234.9 15.0 208 1-286 104-316 (318)
26 cd01492 Aos1_SUMO Ubiquitin ac 99.9 5.8E-26 1.3E-30 205.9 13.5 140 1-248 53-192 (197)
27 cd01485 E1-1_like Ubiquitin ac 99.9 7.4E-25 1.6E-29 198.9 12.5 100 1-113 51-155 (198)
28 TIGR01381 E1_like_apg7 E1-like 99.9 1.9E-23 4E-28 214.0 16.7 112 1-126 370-520 (664)
29 PRK14852 hypothetical protein; 99.9 1.8E-23 3.8E-28 222.9 14.4 180 1-235 364-546 (989)
30 TIGR01408 Ube1 ubiquitin-activ 99.9 3.4E-23 7.4E-28 225.1 16.8 108 1-127 56-165 (1008)
31 PRK08644 thiamine biosynthesis 99.9 5.3E-23 1.1E-27 188.6 14.2 103 1-117 60-164 (212)
32 PRK14851 hypothetical protein; 99.9 6.5E-23 1.4E-27 215.3 15.6 173 1-235 75-257 (679)
33 cd01487 E1_ThiF_like E1_ThiF_l 99.9 9.9E-23 2.1E-27 181.3 13.1 112 1-125 31-145 (174)
34 TIGR03736 PRTRC_ThiF PRTRC sys 99.9 3.4E-22 7.3E-27 185.7 12.4 127 1-141 53-193 (244)
35 KOG2336 Molybdopterin biosynth 99.9 1.7E-22 3.7E-27 185.5 8.9 186 1-264 114-314 (422)
36 PRK07877 hypothetical protein; 99.9 1.5E-21 3.3E-26 205.5 13.8 112 1-129 139-255 (722)
37 cd01493 APPBP1_RUB Ubiquitin a 99.8 4.4E-20 9.5E-25 184.6 19.0 110 1-124 52-164 (425)
38 KOG2014 SMT3/SUMO-activating c 99.8 1.9E-20 4.2E-25 173.9 11.9 226 3-250 65-323 (331)
39 cd01486 Apg7 Apg7 is an E1-lik 99.8 4.9E-20 1.1E-24 174.6 13.9 101 1-115 31-151 (307)
40 PF00899 ThiF: ThiF family; I 99.8 2.2E-20 4.7E-25 159.4 9.7 100 1-113 34-134 (135)
41 cd01483 E1_enzyme_family Super 99.8 6.1E-20 1.3E-24 158.1 10.6 102 1-115 31-133 (143)
42 TIGR02354 thiF_fam2 thiamine b 99.8 2.2E-18 4.7E-23 156.7 13.6 110 1-124 53-167 (200)
43 PF02134 UBACT: Repeat in ubiq 99.7 5.6E-18 1.2E-22 126.7 5.2 67 167-233 1-67 (67)
44 KOG2012 Ubiquitin activating e 99.7 1.6E-17 3.5E-22 171.0 9.5 230 3-251 71-396 (1013)
45 cd00755 YgdL_like Family of ac 99.7 2.7E-17 5.9E-22 152.4 9.1 95 1-108 43-139 (231)
46 PF08825 E2_bind: E2 binding d 99.7 4.6E-17 1E-21 126.5 7.1 84 271-362 1-84 (84)
47 PRK06153 hypothetical protein; 99.7 5.2E-16 1.1E-20 151.6 13.3 106 1-127 208-317 (393)
48 PRK15116 sulfur acceptor prote 99.6 5.1E-16 1.1E-20 146.4 9.2 93 1-106 62-156 (268)
49 COG1179 Dinucleotide-utilizing 99.6 3.7E-15 8.1E-20 135.6 10.3 93 1-106 62-156 (263)
50 TIGR03693 ocin_ThiF_like putat 99.4 1.6E-12 3.4E-17 133.0 11.0 169 1-267 161-336 (637)
51 PF10585 UBA_e1_thiolCys: Ubiq 99.3 2.8E-13 6E-18 92.7 -0.5 44 117-163 1-44 (45)
52 KOG2016 NEDD8-activating compl 99.2 5.7E-11 1.2E-15 115.9 10.6 102 3-117 61-165 (523)
53 PF05237 MoeZ_MoeB: MoeZ/MoeB 99.1 5.9E-11 1.3E-15 92.9 4.7 57 210-267 25-82 (84)
54 KOG2018 Predicted dinucleotide 99.0 1.1E-09 2.4E-14 103.0 9.9 90 1-103 106-197 (430)
55 PF09358 UBA_e1_C: Ubiquitin-a 99.0 1.6E-09 3.4E-14 91.0 8.2 88 268-371 34-121 (125)
56 PF14732 UAE_UbL: Ubiquitin/SU 98.9 4.4E-09 9.4E-14 82.7 7.6 81 271-364 2-84 (87)
57 PTZ00245 ubiquitin activating 98.8 4.2E-09 9.1E-14 97.4 6.0 64 1-70 58-121 (287)
58 KOG2337 Ubiquitin activating E 98.7 9E-08 2E-12 95.5 9.9 95 3-111 374-489 (669)
59 TIGR03882 cyclo_dehyd_2 bacter 93.1 0.16 3.5E-06 45.9 5.0 52 60-125 140-193 (193)
60 COG4015 Predicted dinucleotide 73.4 8.4 0.00018 33.9 5.4 61 18-80 68-131 (217)
61 cd01490 Ube1_repeat2 Ubiquitin 70.0 5.1 0.00011 40.8 3.9 27 168-194 250-276 (435)
62 PF10087 DUF2325: Uncharacteri 69.8 29 0.00064 27.3 7.6 71 23-108 10-87 (97)
63 PF11543 UN_NPL4: Nuclear pore 69.6 3.8 8.3E-05 31.5 2.3 60 268-338 15-75 (80)
64 TIGR00696 wecB_tagA_cpsF bacte 69.5 18 0.00039 32.2 6.9 57 24-80 60-122 (177)
65 PF01113 DapB_N: Dihydrodipico 67.5 21 0.00046 29.5 6.6 40 53-107 62-101 (124)
66 PF13241 NAD_binding_7: Putati 63.2 50 0.0011 26.2 7.8 64 27-103 18-92 (103)
67 cd06533 Glyco_transf_WecG_TagA 60.1 31 0.00066 30.3 6.5 55 26-80 60-121 (171)
68 PF01118 Semialdhyde_dh: Semia 59.6 12 0.00027 30.6 3.7 37 54-104 62-98 (121)
69 COG1748 LYS9 Saccharopine dehy 56.4 20 0.00044 36.0 5.2 53 40-106 48-102 (389)
70 PF03808 Glyco_tran_WecB: Glyc 55.7 42 0.0009 29.5 6.6 60 21-80 56-123 (172)
71 PRK05562 precorrin-2 dehydroge 55.2 95 0.002 28.7 9.1 39 53-104 80-118 (223)
72 PF03435 Saccharop_dh: Sacchar 53.3 18 0.00038 36.0 4.3 52 37-102 44-97 (386)
73 cd01763 Sumo Small ubiquitin-r 50.9 49 0.0011 25.5 5.6 55 268-338 23-78 (87)
74 PF11976 Rad60-SLD: Ubiquitin- 48.4 50 0.0011 24.0 5.1 55 268-338 12-68 (72)
75 TIGR01851 argC_other N-acetyl- 48.2 59 0.0013 31.6 6.9 70 34-117 22-95 (310)
76 PRK00048 dihydrodipicolinate r 40.0 1.7E+02 0.0038 27.3 8.6 41 53-108 55-95 (257)
77 cd01782 AF6_RA_repeat1 Ubiquit 39.9 61 0.0013 26.5 4.6 37 272-310 41-77 (112)
78 cd01812 BAG1_N Ubiquitin-like 39.4 75 0.0016 22.9 4.8 53 270-338 13-66 (71)
79 cd01800 SF3a120_C Ubiquitin-li 39.0 58 0.0012 24.3 4.2 58 262-333 3-61 (76)
80 PF11470 TUG-UBL1: GLUT4 regul 35.4 62 0.0013 23.8 3.7 37 268-304 8-44 (65)
81 COG1648 CysG Siroheme synthase 34.5 1.2E+02 0.0026 27.7 6.3 53 28-80 24-94 (210)
82 cd01796 DDI1_N DNA damage indu 33.0 69 0.0015 23.6 3.7 35 269-303 12-46 (71)
83 smart00455 RBD Raf-like Ras-bi 32.9 64 0.0014 24.0 3.5 33 268-300 11-43 (70)
84 COG1922 WecG Teichoic acid bio 31.4 1.5E+02 0.0032 28.1 6.4 56 25-80 121-183 (253)
85 PRK11863 N-acetyl-gamma-glutam 30.2 1.6E+02 0.0034 28.7 6.7 57 33-103 22-81 (313)
86 cd01798 parkin_N amino-termina 28.9 91 0.002 22.6 3.8 54 266-333 8-62 (70)
87 TIGR01470 cysG_Nterm siroheme 27.7 2.9E+02 0.0064 24.9 7.7 41 53-106 64-104 (205)
88 cd01794 DC_UbP_C dendritic cel 27.2 1.1E+02 0.0024 22.5 4.0 25 266-290 8-32 (70)
89 PF12847 Methyltransf_18: Meth 27.2 1E+02 0.0022 23.9 4.2 42 24-66 37-78 (112)
90 cd01807 GDX_N ubiquitin-like d 26.8 1.1E+02 0.0023 22.6 3.9 52 268-333 12-64 (74)
91 PRK10637 cysG siroheme synthas 26.5 3.1E+02 0.0067 28.1 8.4 28 53-80 67-94 (457)
92 PRK04761 ppnK inorganic polyph 25.8 2.3E+02 0.0049 26.7 6.7 60 21-109 3-64 (246)
93 PRK06719 precorrin-2 dehydroge 25.6 2.6E+02 0.0055 24.1 6.6 27 54-80 66-92 (157)
94 PF14560 Ubiquitin_2: Ubiquiti 25.4 91 0.002 23.8 3.4 69 268-350 15-84 (87)
95 cd01799 Hoil1_N Ubiquitin-like 24.9 1.3E+02 0.0028 22.6 4.0 28 265-292 11-38 (75)
96 cd05563 PTS_IIB_ascorbate PTS_ 24.6 85 0.0018 23.7 3.1 45 20-67 8-54 (86)
97 cd05566 PTS_IIB_galactitol PTS 24.3 76 0.0016 24.2 2.7 47 20-67 9-57 (89)
98 PF13847 Methyltransf_31: Meth 24.1 1.1E+02 0.0023 25.7 3.9 45 19-65 35-80 (152)
99 PF00240 ubiquitin: Ubiquitin 23.9 1.4E+02 0.0031 21.2 4.1 51 269-333 8-59 (69)
100 smart00213 UBQ Ubiquitin homol 23.8 1.3E+02 0.0027 20.8 3.7 23 269-291 12-34 (64)
101 cd01793 Fubi Fubi ubiquitin-li 23.6 1.2E+02 0.0025 22.4 3.6 33 270-302 12-44 (74)
102 PF02196 RBD: Raf-like Ras-bin 23.0 1.2E+02 0.0027 22.4 3.5 28 268-295 12-39 (71)
103 cd01810 ISG15_repeat2 ISG15 ub 22.9 1.4E+02 0.003 22.0 3.9 52 268-333 10-62 (74)
104 PF03447 NAD_binding_3: Homose 22.3 1.3E+02 0.0029 24.0 4.0 38 53-104 52-91 (117)
105 PF14205 Cys_rich_KTR: Cystein 22.0 40 0.00087 23.9 0.6 23 261-283 6-28 (55)
106 PRK04207 glyceraldehyde-3-phos 21.9 1.2E+02 0.0027 29.8 4.3 39 53-105 73-111 (341)
107 cd01806 Nedd8 Nebb8-like ubiq 21.9 1.8E+02 0.004 21.0 4.4 52 268-333 12-64 (76)
108 PF03618 Kinase-PPPase: Kinase 21.1 4E+02 0.0086 25.2 7.3 65 25-102 12-83 (255)
109 PRK06718 precorrin-2 dehydroge 21.1 4.6E+02 0.01 23.5 7.6 27 54-80 66-92 (202)
110 cd00196 UBQ Ubiquitin-like pro 20.9 1.3E+02 0.0029 19.3 3.3 21 270-290 11-31 (69)
111 PRK03692 putative UDP-N-acetyl 20.6 3.4E+02 0.0074 25.3 6.8 55 25-80 118-179 (243)
112 cd01760 RBD Ubiquitin-like dom 20.4 1.5E+02 0.0034 22.1 3.6 26 268-293 11-36 (72)
113 PRK13601 putative L7Ae-like ri 20.3 2.2E+02 0.0047 21.9 4.5 36 58-106 24-60 (82)
114 cd01805 RAD23_N Ubiquitin-like 20.0 1.8E+02 0.0039 21.3 4.0 23 268-290 12-34 (77)
No 1
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-80 Score=571.95 Aligned_cols=347 Identities=47% Similarity=0.787 Sum_probs=329.4
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
||+||+|||||||||+++|+|+|||++||+.++++.|++.|.+|.++|++++.+|+++||+||+++|++++|+|||.+.+
T Consensus 72 mDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~ 151 (422)
T KOG2015|consen 72 MDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLV 151 (422)
T ss_pred ecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhhhh
Q 017136 81 SFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWD 160 (376)
Q Consensus 81 ~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~~~ 160 (376)
.+..+ |.++...-+|+||||++|++|++++|.|+.|+|++|+...+|++.++|+|||+++|+.|||||+|++.++|+
T Consensus 152 ~l~~~---g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwp 228 (422)
T KOG2015|consen 152 RLKLE---GNYDISSIIPLIDGGTEGFKGHARVIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWP 228 (422)
T ss_pred HHHhc---cCCCccceeeeeecCcccccceeEEEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcch
Confidence 76654 556666779999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCC-CCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCcccc
Q 017136 161 EVHSG-KSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN 239 (376)
Q Consensus 161 ~~~~~-~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l~~ 239 (376)
++++. ..++.||++|++||++.+++||.+|+|.++++.++.|+...||||+|+|||+||+.+|.||+|+++....+++|
T Consensus 229 e~~~~g~~~~gdd~~hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~N 308 (422)
T KOG2015|consen 229 ELNPFGVPLDGDDPEHIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDN 308 (422)
T ss_pred hhCccCCCCCCCCHHHHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhh
Confidence 99876 67999999999999999999999999999999999999999999999999999999999999999999888999
Q ss_pred cccccccccceeeeeecccCCCCcccCC-cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeC-CcEEEecCCcchhHh
Q 017136 240 YLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYR-GKNLYMQAPPVLEEM 317 (376)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~C~vC~~-~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~-~~~lY~~~~~~~~~~ 317 (376)
|++|++.+|.+++++..++.++|++|+. ...+++.+..||+++++++++++ +|+.|.+++. ...||.+++|++++.
T Consensus 309 ym~~n~~eG~ytytf~~er~~nC~vCS~~~~~~~ispt~tl~~vl~~ls~~~--~lk~p~~tt~~~~~ly~~~~~~~e~~ 386 (422)
T KOG2015|consen 309 YMNYNAEEGIYTYTFLLERDKNCPVCSNLVQNYDISPTVTLEDVLNHLSKSF--QLKSPALTTAAGRTLYLSSVPSIEEA 386 (422)
T ss_pred heeeecccceeEEEeeeccCCCCccccCCCcccccCCcccHHHHHHHhhhhh--ccCCchhhhhhcceEeecCCcHHHHH
Confidence 9999999999999999999999999997 66777888999999999999765 9999998754 479999999999999
Q ss_pred hhccCCCchHHhhcccccceeeeccccccccCCcceeEEEEEEE
Q 017136 318 TRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTSCLRKLRVVF 361 (376)
Q Consensus 318 ~~~~l~~~l~~lv~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 361 (376)
+++||.++|.+| .+| .+| +|||..++.++.|++++
T Consensus 387 t~~nl~~~l~~l-~dg--~~l------~vtd~~~~~~l~~~l~~ 421 (422)
T KOG2015|consen 387 TRKNLSQSLKEL-SDG--QEL------VVTDKTLSTALTLQLRE 421 (422)
T ss_pred hhhhhhhhHHHh-cCC--ceE------EEecccCCcceeEEEec
Confidence 999999999999 778 899 99999999999998875
No 2
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=8.9e-69 Score=508.62 Aligned_cols=261 Identities=63% Similarity=1.075 Sum_probs=248.3
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
+|+||+|||||||||+++|||++||++|+++++++||+++|+++..++.+++.+|+++||+||+|+||+++|+|+|++|.
T Consensus 31 ~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~~~~~f~~~fdvVi~alDn~~aR~~in~~~~ 110 (291)
T cd01488 31 MDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQDKDEEFYRQFNIIICGLDSIEARRWINGTLV 110 (291)
T ss_pred CCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCchhHHHhcCCCEEEECCCCHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999998888999999999999999999999999987
Q ss_pred hccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhhhh
Q 017136 81 SFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWD 160 (376)
Q Consensus 81 ~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~~~ 160 (376)
.+..+. ..+.++|||++|+.|+.|+++++.|+.|+||+|.....|+++++|+|||+++|+.|+|||+||+.+.|+
T Consensus 111 ~~~~~~-----~~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p~~~~~p~Cti~~~P~~~~hci~~a~~~~~~ 185 (291)
T cd01488 111 SLLLYE-----DPESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVTFPLCTIANTPRLPEHCIEYASLIQWP 185 (291)
T ss_pred Hhcccc-----ccccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCCCCCCCCcccccCCCCCcchheeeeeeeecc
Confidence 432110 023579999999999999999999999999999998788999999999999999999999999999999
Q ss_pred hccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCccccc
Q 017136 161 EVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNY 240 (376)
Q Consensus 161 ~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l~~~ 240 (376)
++++..+||+||++|++||+++|++||++|||++.+++.++++++||||||+||||||||+++.|++|+++++.+.++||
T Consensus 186 ~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~stnaiia~~~~~~~~k~~~~~~~~~~n~ 265 (291)
T cd01488 186 KEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVASTNAIIAAACCLEALKIATDCYENLNNY 265 (291)
T ss_pred cccCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccCchHHHHHHHHHHHHHHHHhccccCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred ccccccccceeeeeecccCCCCcccC
Q 017136 241 LTYNGVAGLHIKVTEFVKDKDCLVCG 266 (376)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~C~vC~ 266 (376)
++|.|..|.+++++..+|+|+|++|+
T Consensus 266 ~~~~g~~g~~~~~~~~~~~~~c~~c~ 291 (291)
T cd01488 266 LMYNGVDGCYTYTFEHERKEDCPVCS 291 (291)
T ss_pred EEEecCCceEEEEEEEeeCCCCCCCC
Confidence 99999999999999999999999996
No 3
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-69 Score=519.83 Aligned_cols=329 Identities=31% Similarity=0.524 Sum_probs=271.8
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCc--chhccccCcEEEEccCCHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK--DISFYNDFNIIVLGLDSIEARSYINAV 78 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~--~~~~~~~~DlVi~a~Dn~~~r~~in~~ 78 (376)
+|+||+||||||||||.+|||++||.+|++.++++||.+++.+|+.+|.+. +.+||++||+|++|+||.+||+++|++
T Consensus 44 lDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~ 123 (603)
T KOG2013|consen 44 LDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRM 123 (603)
T ss_pred ccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999874 589999999999999999999999999
Q ss_pred HHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhh
Q 017136 79 ACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 158 (376)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~ 158 (376)
|+ ...+|||++|+.||.||++++++|+|+||+|... |.++++|+||||++|+.|+|||+|||++.
T Consensus 124 C~-------------~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK--~~~kTypvCTIRstPS~~iHCIVWAK~~l 188 (603)
T KOG2013|consen 124 CL-------------AASVPLIESGTGGFLGQVQVIIKGKTECYECIPK--PVPKTYPVCTIRSTPSEPIHCIVWAKHYL 188 (603)
T ss_pred HH-------------hhcCCceecCcccccceEEEEecCCcceecccCC--CCCCcCCceEeecCCCCceeeeeehHhHH
Confidence 97 6889999999999999999999999999999854 77889999999999999999999999754
Q ss_pred hhhcc---------------------------------------------------------------------------
Q 017136 159 WDEVH--------------------------------------------------------------------------- 163 (376)
Q Consensus 159 ~~~~~--------------------------------------------------------------------------- 163 (376)
|.++|
T Consensus 189 F~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~e~~ 268 (603)
T KOG2013|consen 189 FNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERRESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGMEAL 268 (603)
T ss_pred HHHHhccccccccccccccCchhhhccChhhhhhhccchHHHHHHHHHHHHhhccCCChhhhhhHHHHHHHHHHHhhhhh
Confidence 44433
Q ss_pred -----------------------------------------------------------------CC--CCCCCCChHHH
Q 017136 164 -----------------------------------------------------------------SG--KSFDPDDPEHM 176 (376)
Q Consensus 164 -----------------------------------------------------------------~~--~~fd~dd~~~l 176 (376)
++ +.||+||...+
T Consensus 269 wk~r~~p~pl~~~~~i~~~~~t~ns~~q~~~~a~~~~~~v~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l~fdKdd~~~~ 348 (603)
T KOG2013|consen 269 WKPRSRPVPLSIAEVISTSLETINSIVQSITSAQLNDQNVWTVDEGAVVFRLSIQALDLRCPKESDHWYLIFDKDDASTM 348 (603)
T ss_pred ccCCCCCCCcchhhccCCccccccchhhhccccccCCcceeeeccccHHHHHHHHHhcccCCccCCCceEEEcCCcHHHH
Confidence 23 56999999999
Q ss_pred HHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCccccccccccccc----ceee
Q 017136 177 QWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAG----LHIK 252 (376)
Q Consensus 177 ~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l~~~~~~~~~~~----~~~~ 252 (376)
+||.++||+|++.|||+..+.+.+++||||||||||||||+|||+++.|++|+|+|.....+.. ++..... ....
T Consensus 349 ~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtTNAiIagliv~eaiKvl~~~~~~~~~~-f~~~~~n~r~r~l~~ 427 (603)
T KOG2013|consen 349 EFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATTNAIIAGLIVTEAIKVLGGDFDDCNMI-FLAKRPNPRKRVLLP 427 (603)
T ss_pred HHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhhhhHHHHHHHHHHHHHhccchhcceee-EEccCCCccceeecc
Confidence 9999999999999999999999999999999999999999999999999999998864433322 2222111 1112
Q ss_pred eeecccCCCCcccCC-cEEEEeCC-CCcHHHHHHHHHcCccccceeeEEEeC-CcEEEecCCcchhHhhhccCCCchHHh
Q 017136 253 VTEFVKDKDCLVCGP-GVLIELDT-SVTLEKFINLLEEHPKLQLAKASVTYR-GKNLYMQAPPVLEEMTRSNLSLPLYDL 329 (376)
Q Consensus 253 ~~~~~~~~~C~vC~~-~~~~~~~~-~~tl~~li~~l~~k~~~~l~~~~i~~~-~~~lY~~~~~~~~~~~~~~l~~~l~~l 329 (376)
....+|||+||+|+. ...+.++. .+|+..|++.+-+. ++++ .|.++.- ..++|.. .+++|+.|+|+||
T Consensus 428 ~~~~~PNp~C~vCs~~~~~l~ln~~~~~~~~L~D~ivk~-r~~~-~pdvsll~~~Li~~~-------d~e~n~~k~lsel 498 (603)
T KOG2013|consen 428 WALRPPNPNCPVCSEVPLVLELNTRKSTLRDLVDKIVKT-RLGY-LPDVSLLDDDLIDDM-------DFEDNLDKTLSEL 498 (603)
T ss_pred cccCCCCCCCccccccceEEEeccccchHHHHHHHHHHH-Hhcc-Ccccchhhhhhcccc-------cchhhhhhhHHhh
Confidence 233578999999998 66677764 68999999887543 3455 4555533 3444432 3567999999999
Q ss_pred -hcccccceeeeccccccccCCcceeEEEEEEEecc
Q 017136 330 -MDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGV 364 (376)
Q Consensus 330 -v~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 364 (376)
+.+| ..+ ++.|...... +.++|.++
T Consensus 499 ~i~ng--sli------~~~~e~~d~~--~~~~~~~~ 524 (603)
T KOG2013|consen 499 GILNG--SLI------NVKDEILDPV--LEVHFTES 524 (603)
T ss_pred CCCCC--ceE------eeecccCCcc--eeeeeccc
Confidence 9999 566 6776444322 23666543
No 4
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=100.00 E-value=2.6e-64 Score=499.61 Aligned_cols=294 Identities=30% Similarity=0.445 Sum_probs=252.9
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccC-----cchhccccCcEEEEccCCHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED-----KDISFYNDFNIIVLGLDSIEARSYI 75 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~-----~~~~~~~~~DlVi~a~Dn~~~r~~i 75 (376)
+|+||+|||||||||+++|||++||++|+++++++||+++|+++..++.+ ++.+|++++|+|++|+||+++|+++
T Consensus 36 ~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~v 115 (435)
T cd01490 36 MDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYV 115 (435)
T ss_pred CCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHH
Confidence 69999999999999999999999999999999999999999999999864 2358999999999999999999999
Q ss_pred HHHHHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhh
Q 017136 76 NAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAH 155 (376)
Q Consensus 76 n~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~ 155 (376)
|++|+ ..++|+|++|+.|++|++++++|+.|+||+|.. +|+++++|+||++++|+.++|||+||+
T Consensus 116 n~~C~-------------~~~iPli~~gt~G~~G~v~v~iP~~te~y~~~~--~p~~~~~P~Ctl~~~P~~~eHcI~wA~ 180 (435)
T cd01490 116 DRRCV-------------YYRKPLLESGTLGTKGNTQVVIPHLTESYSSSR--DPPEKSIPLCTLKNFPNAIEHTIQWAR 180 (435)
T ss_pred HHHHH-------------HhCCCEEEEecccceeEEEEEeCCCCCCccCCC--CCCCCCCCCccccCCCCCchHHHHHHH
Confidence 99997 678999999999999999999999999999984 578889999999999999999999999
Q ss_pred hh---------------------hhhhc-----c----------------------------------------------
Q 017136 156 LI---------------------KWDEV-----H---------------------------------------------- 163 (376)
Q Consensus 156 ~~---------------------~~~~~-----~---------------------------------------------- 163 (376)
.+ .|++. +
T Consensus 181 ~~F~~lF~~~~~~~~~~~~~~c~~~a~~~f~~~F~~~I~~ll~~~p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~f 260 (435)
T cd01490 181 DEFEGLFKQPPENVNQYLFEDCVRWARLLFEKYFNNNIKQLLHNFPPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDF 260 (435)
T ss_pred HHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccccccccCCCCCCCCCCCCCCCHHHHHH
Confidence 86 34221 0
Q ss_pred ------------CCCCCCCCChH--HHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHH
Q 017136 164 ------------SGKSFDPDDPE--HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKI 229 (376)
Q Consensus 164 ------------~~~~fd~dd~~--~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~ 229 (376)
+...|+|||+. |++||+++||+||++|+|++.++++++++||+||||||||||+|||++++|++|+
T Consensus 261 v~~~a~l~a~~~~~~~FeKDdd~n~h~~fi~a~snlRa~~y~I~~~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~ 340 (435)
T cd01490 261 VLAAANLYAEVYGIPGFEKDDDTNFHMDFITAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKV 340 (435)
T ss_pred HHHHHHHHHHhcCCCccccCCchhHHHHHHHHhhhhHHHHcCCCccCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHH
Confidence 22237888764 8999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCcccccccccccccceeeeeecccCCCCccc--C---C-cEEEEeCCCCcHHHHH-HHHHcCccccceeeEEEeC
Q 017136 230 ASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVC--G---P-GVLIELDTSVTLEKFI-NLLEEHPKLQLAKASVTYR 302 (376)
Q Consensus 230 L~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~vC--~---~-~~~~~~~~~~tl~~li-~~l~~k~~~~l~~~~i~~~ 302 (376)
++|+. ++..|.+...+.+.+...++.+..|.+..| + + |++++++.++|+++|+ ++++++| ++++.||+.|
T Consensus 341 ~~~~~-~~~~~~n~~~nla~p~~~~~~p~~~~~~~~~~~~~~t~Wdr~~v~~~~t~~~~~~~~~~~~~--~~~v~~i~~g 417 (435)
T cd01490 341 VDGKR-PLEAYKNAFLNLALPFFAFSEPIPAPKVKYAYDEEWTIWDRFEVKGKQTLQELLIDYFKEKY--GLEVTMLSQG 417 (435)
T ss_pred HhCCc-cHHHcchHhhhccCCccccccCCCCCccccCCCCEEeeEeEEEEcCCCcHHHHHHHHHHHHh--CCeEEEEEeC
Confidence 99873 344443322222333334444433445556 2 2 9999998899999999 9999987 8899999999
Q ss_pred CcEEEecCCc
Q 017136 303 GKNLYMQAPP 312 (376)
Q Consensus 303 ~~~lY~~~~~ 312 (376)
+++||..+.+
T Consensus 418 ~~~ly~~~~~ 427 (435)
T cd01490 418 VSMLYSSFMP 427 (435)
T ss_pred CeEEEeecCC
Confidence 9999999843
No 5
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=8.2e-62 Score=524.87 Aligned_cols=311 Identities=29% Similarity=0.439 Sum_probs=269.2
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCc-----chhccccCcEEEEccCCHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK-----DISFYNDFNIIVLGLDSIEARSYI 75 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~-----~~~~~~~~DlVi~a~Dn~~~r~~i 75 (376)
+|+||.|||||||||+.+|||++||++|+++++++||+++|+++..++.+. +.+||+++|+||+|+||+++|+++
T Consensus 456 ~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~v 535 (1008)
T TIGR01408 456 PDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYV 535 (1008)
T ss_pred CCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHH
Confidence 699999999999999999999999999999999999999999999998642 368999999999999999999999
Q ss_pred HHHHHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhh
Q 017136 76 NAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAH 155 (376)
Q Consensus 76 n~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~ 155 (376)
|++|+ .+++|||++|+.|++|++++++|+.|+||.|.. +|+++++|+|||+++|+.++|||+||+
T Consensus 536 n~~c~-------------~~~iPli~~gt~G~~G~v~v~ip~~te~y~~~~--d~~~~~~P~Ctl~~~P~~~~h~i~wa~ 600 (1008)
T TIGR01408 536 DSRCL-------------AFLKPLLESGTLGTKGNTQVVVPHLTESYGSSR--DPPEKEIPFCTLKSFPAAIEHTIQWAR 600 (1008)
T ss_pred HHHHH-------------HcCCCEEEEeccCceeeEEEEeCCCcCCCCCCC--CCCCCCCCcccccCCCCCchHHHHHHH
Confidence 99997 689999999999999999999999999999984 588899999999999999999999999
Q ss_pred hh---------------------------------------------------------hhhhcc---------------
Q 017136 156 LI---------------------------------------------------------KWDEVH--------------- 163 (376)
Q Consensus 156 ~~---------------------------------------------------------~~~~~~--------------- 163 (376)
.+ .|++..
T Consensus 601 ~~f~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~~p~~~~~cv~~a~~~f~~~F~~~I~qLl~~ 680 (1008)
T TIGR01408 601 DKFEGLFSHKPSLVNKYLSSPSSAEEVLQKIQSGHSREGLEQIIKLLSKEKPRNFSQCVEWARLKFEKYFNNKALQLLHC 680 (1008)
T ss_pred HHHHHHHHhhHHHHHHHhhChHHHHHHHHhcCchhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 61 111110
Q ss_pred --------------------------------------------------------------------------------
Q 017136 164 -------------------------------------------------------------------------------- 163 (376)
Q Consensus 164 -------------------------------------------------------------------------------- 163 (376)
T Consensus 681 fP~d~~~~~G~~fWs~~kr~P~pl~Fd~~~~~h~~Fi~aaanL~A~~ygi~~~~~~~~~~~~~~~~~~~~vp~f~p~~~~ 760 (1008)
T TIGR01408 681 FPLDIRTSTGSPFWSSPKRPPSPLKFDLNEPLHLSFIQAAAKLYATVYGIPFAEEDLSADALLNILSEVKIPEFKPRSNK 760 (1008)
T ss_pred CCccccccCCCccccCCCCCCCceeeCCCCHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHhcCCCCCCCCCcCc
Confidence
Q ss_pred -----------------------------------------CCCCCCCCChH--HHHHHHHHHHHHHHHhCCCCcccccc
Q 017136 164 -----------------------------------------SGKSFDPDDPE--HMQWVYSEAVKRAELFGIPGVTYSLT 200 (376)
Q Consensus 164 -----------------------------------------~~~~fd~dd~~--~l~~i~~~a~~ra~~~~I~~~~~~~~ 200 (376)
.+.+|+|||+. |++||+++||+||.+|+|+..+++++
T Consensus 761 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~p~~FeKDDd~n~HidFI~AasNLRA~nY~I~~~d~~~~ 840 (1008)
T TIGR01408 761 KIQTDETARKPDTAPEDDRNAIFQLEKAILSNEATKSDFRMAPLSFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKT 840 (1008)
T ss_pred eeecChhhhcccccccchHHHHHHHHHHhhccccccCCCCCCceeeccCCCcchHHHHHHHHHhhHHHhcCCCcccHHHH
Confidence 12458999877 99999999999999999999999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHhccCCCcccccccccccccceeeeeecccCCCCcccC------C-cEEEEe
Q 017136 201 QGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLVCG------P-GVLIEL 273 (376)
Q Consensus 201 ~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~vC~------~-~~~~~~ 273 (376)
|+|||+||||||||||+||||+++|++|++.|.. ++..|.+...+.+++...+. +|.+-|..|. + |+++.+
T Consensus 841 K~iAG~IIPAiATTTA~vaGLv~lEl~Kv~~~~~-~i~~~kn~f~nlalp~~~~s-eP~~~~~~~~~~~~~~t~WDr~~i 918 (1008)
T TIGR01408 841 KFIAGKIIPAIATSTATVSGLVCLELIKVTDGGY-KFEVYKNCFLNLAIPLFVFT-EPTEVRKTKIRNGISFTIWDRWTL 918 (1008)
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHHHHHhccc-cHHHHhHHHHhhcccccccc-CCCCCCceeecCceeccceEEEEe
Confidence 9999999999999999999999999999999863 45554433333444443443 3455566662 2 899999
Q ss_pred CCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHhhcccc
Q 017136 274 DTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVA 334 (376)
Q Consensus 274 ~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~lv~~g~ 334 (376)
..++||++|+++++++| ++++.||+.|+++||.++.+ +.++||+++|+||++..+
T Consensus 919 ~~~~Tl~~~i~~~~~~~--~~~v~~is~g~~~lY~~~~~----~~~erl~~~l~el~~~~~ 973 (1008)
T TIGR01408 919 HGDFTLLEFINAVKEKY--GLEPTMVSQGVKLLYVPVMP----GHAERLKLKMHKLVKPTT 973 (1008)
T ss_pred cCCCcHHHHHHHHHHHh--CCeeEEEEcCceEEEeccch----hhHHhcCCCHHHHHHHhc
Confidence 88999999999999987 88999999999999998853 345799999999988773
No 6
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-61 Score=489.61 Aligned_cols=326 Identities=30% Similarity=0.427 Sum_probs=274.0
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccC-----cchhccccCcEEEEccCCHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED-----KDISFYNDFNIIVLGLDSIEARSYI 75 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~-----~~~~~~~~~DlVi~a~Dn~~~r~~i 75 (376)
||.||.||||||||||..||||+|+++||++++.+||+++|+++..++.. ++++||++.|+|.+|+||++||+|+
T Consensus 467 mD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~Yv 546 (1013)
T KOG2012|consen 467 MDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYV 546 (1013)
T ss_pred cchhhhccccceeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhh
Confidence 89999999999999999999999999999999999999999999999975 4689999999999999999999999
Q ss_pred HHHHHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhh
Q 017136 76 NAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAH 155 (376)
Q Consensus 76 n~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~ 155 (376)
++.|+ -+.+|++++||.|++|++++++|+.|+.|... .+||++++|+||+++||+.+||||+||+
T Consensus 547 D~RCv-------------~~~kPLLESGTlGTKGntQVvvPhlTEsY~SS--~DPPEksiP~CTlknFPn~IeHTiqWAR 611 (1013)
T KOG2012|consen 547 DRRCV-------------YYRKPLLESGTLGTKGNTQVVVPHLTESYGSS--RDPPEKSIPVCTLKSFPNAIEHTIQWAR 611 (1013)
T ss_pred hhhhh-------------hhccchhhccCcCCccceeEEecccccccccc--CCCcccCCceeeeccCchHHHHHHHHHH
Confidence 99997 57899999999999999999999999999766 5799999999999999999999999999
Q ss_pred h--------------------------------------------------------hhhhhcc----------------
Q 017136 156 L--------------------------------------------------------IKWDEVH---------------- 163 (376)
Q Consensus 156 ~--------------------------------------------------------~~~~~~~---------------- 163 (376)
. +.|++..
T Consensus 612 ~eFEg~F~~~~e~vN~yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l~~rp~~~~dCv~warl~f~~~f~~~ikqLl~~F 691 (1013)
T KOG2012|consen 612 DEFEGLFKQSAENVNKYLSDPVFYETSLKLIGEPQSLETLERVVDCLSERPQNWQDCVEWARLHFEKYFHNRIKQLLHNF 691 (1013)
T ss_pred HHHHHHhhCCHHHHHHHhcCchHHHHHHhhccCcchhHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHhhHHHHHhhcCC
Confidence 6 1233321
Q ss_pred --------------------------------------------------------------------------------
Q 017136 164 -------------------------------------------------------------------------------- 163 (376)
Q Consensus 164 -------------------------------------------------------------------------------- 163 (376)
T Consensus 692 P~d~~t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~~~d~~~~~~~~~~v~~p~f~P~~~~~i~~ 771 (1013)
T KOG2012|consen 692 PPDAKTSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVYGIPGSQDREALAELLERVIVPEFEPKQKVKIVV 771 (1013)
T ss_pred CcccccCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhcCCCcccCHHHhhhhHhhcCCCccccccCCeecc
Confidence
Q ss_pred ------------------------------------CCCCCCCCCh--HHHHHHHHHHHHHHHHhCCCCccccccccccc
Q 017136 164 ------------------------------------SGKSFDPDDP--EHMQWVYSEAVKRAELFGIPGVTYSLTQGVVK 205 (376)
Q Consensus 164 ------------------------------------~~~~fd~dd~--~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag 205 (376)
.++.|+|||+ .|++||+++||+||++|+|++.++.++|+|||
T Consensus 772 ~~~~~~~~~~s~d~~~~i~~l~~~l~~~~~~~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~K~IaG 851 (1013)
T KOG2012|consen 772 EEAELAASSASVDDSAAIDQLNKALPSPSVLPSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKTKRIAG 851 (1013)
T ss_pred cccccccccccCCchHHHHHHhhcccccccCCCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhhheeee
Confidence 2456888775 49999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHHHHHHHHHHhccCCCcccccccccccccceeeeeecccCCCCc-------ccCCcEEEEeCCCCc
Q 017136 206 NIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCL-------VCGPGVLIELDTSVT 278 (376)
Q Consensus 206 ~iiPaiatt~aiiagl~~~EalK~L~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~-------vC~~~~~~~~~~~~t 278 (376)
+||||||||+|+++|++++|++|++.|. .++..|.+-..+..++...+.. |-+.|. ..+.|+++++..+.|
T Consensus 852 kIIPAIATtTa~v~Glv~LElyKv~~G~-~~~e~~Kn~flnLAlp~f~~~e-p~~~pk~~~~~~~~~tlWdR~~v~g~~t 929 (1013)
T KOG2012|consen 852 KIIPAIATTTAAVSGLVCLELYKVVDGK-RPVEAYKNTFLNLALPFFSFAE-PLAAPKVQYHNDLSWTLWDRWEVKGEPT 929 (1013)
T ss_pred eEEEEEeehhHHHHHHHHhhhhhhccCC-CchHHhhhhhhcccccceeecc-cCCCcceeeecccceeeeEEEEecCCCC
Confidence 9999999999999999999999999995 3454443322222233222221 111111 111299999999999
Q ss_pred HHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHhhcccccceeeeccccccccCCcc-eeEEE
Q 017136 279 LEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKKTS-CLRKL 357 (376)
Q Consensus 279 l~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~lv~~g~~~~~~~~~~~~~~d~~~~-~~~~~ 357 (376)
|++|++++++++ ++++.||+.|+.+||..+.+ ++.+||++++.||++.. ... ..+ ..+.|
T Consensus 930 L~~~L~~~~~~~--gl~i~mls~G~~lly~~~~~----k~~erl~~~v~elv~~~--~k~-----------~~~~~~~~l 990 (1013)
T KOG2012|consen 930 LREFLDHLEEQH--GLEITMLSQGVSLLYASFMP----KHAERLPLRVTELVRDV--TKK-----------KLPPHVRHL 990 (1013)
T ss_pred HHHHHHHHhhhc--CceEEEEeccceeehhhhhh----HHHHhcCCcHHHHHHHH--hcc-----------cCCCcceEE
Confidence 999999999876 88999999999999998855 56789999999998877 333 233 46667
Q ss_pred EEEEe
Q 017136 358 RVVFR 362 (376)
Q Consensus 358 ~~~~~ 362 (376)
+|.+-
T Consensus 991 vle~~ 995 (1013)
T KOG2012|consen 991 VLEVA 995 (1013)
T ss_pred EEEEe
Confidence 77774
No 7
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=100.00 E-value=4.4e-60 Score=453.71 Aligned_cols=250 Identities=36% Similarity=0.633 Sum_probs=221.7
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCc--chhccccCcEEEEccCCHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK--DISFYNDFNIIVLGLDSIEARSYINAV 78 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~--~~~~~~~~DlVi~a~Dn~~~r~~in~~ 78 (376)
+|+||.|||||||||+++|||++||++|+++++++||+++|+++..++.+. +.+|++++|+||+|+||.++|+++|++
T Consensus 31 ~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~ 110 (312)
T cd01489 31 LDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKM 110 (312)
T ss_pred CCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCCccchHHHHhcCCEEEECCCCHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999863 468999999999999999999999999
Q ss_pred HHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhh-
Q 017136 79 ACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI- 157 (376)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~- 157 (376)
|+ ..++|+|++|+.|++|+++++.|+.++||+|... ++++++|+|||+++|+.++|||+||+.+
T Consensus 111 c~-------------~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~--~~~~~~pictI~~~p~~~~hci~~a~~~f 175 (312)
T cd01489 111 CL-------------AADVPLIESGTTGFLGQVQVIKKGKTECYECQPK--ETPKTFPVCTIRSTPSQPIHCIVWAKSLF 175 (312)
T ss_pred HH-------------HCCCCEEEEecCcceeEEEEEcCCCCCccCCCCC--CCCCcCCcceecCCCCCCEeehhHHHHHH
Confidence 97 6789999999999999999999999999999864 6678999999999999999999999987
Q ss_pred -------------------hhhhccCC-------CCCCCCChHHHHHHHHHHHHHHHHhCCCCccccccccccccccccc
Q 017136 158 -------------------KWDEVHSG-------KSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAI 211 (376)
Q Consensus 158 -------------------~~~~~~~~-------~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPai 211 (376)
.|...++| .+|||||++|++||+++||+||++|||++.+++++++++|||||||
T Consensus 176 ~~~~~~f~~~i~~l~~~~~~w~~~~~p~p~~~~~~~fdkDd~~~~~~v~~~a~lRa~~f~I~~~~~~~~k~i~g~IiPai 255 (312)
T cd01489 176 FLFNKVFKDDIERLLSMEELWKTRKPPVPLSWKELTFDKDDQDALDFVAAAANLRSHVFGIPMKSRFDIKQMAGNIIPAI 255 (312)
T ss_pred HHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCCCcCcCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHhccccchh
Confidence 78765533 6799999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHhccCCCcccc-cccc--cccccceeeeeecccCCCCccc
Q 017136 212 ASTNAIISAACALETLKIASGCSKTLSN-YLTY--NGVAGLHIKVTEFVKDKDCLVC 265 (376)
Q Consensus 212 att~aiiagl~~~EalK~L~g~~~~l~~-~~~~--~~~~~~~~~~~~~~~~~~C~vC 265 (376)
|||||+|||++++|++|+++++.....+ |+.. .+...........+|||+|.+|
T Consensus 256 atTnaivag~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~c~~c 312 (312)
T cd01489 256 ATTNAIIAGLIVLEALKVLSGDKEQCRTVFLNLQPNRRKRLLVPCKLDPPNPNCYVC 312 (312)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHhhhHhhhcccCCCCcEecCCCCCCcCCCCCCC
Confidence 9999999999999999999987433332 3221 2222222223345789999999
No 8
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=1.3e-58 Score=428.28 Aligned_cols=201 Identities=51% Similarity=0.961 Sum_probs=192.7
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccC---cchhccccCcEEEEccCCHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED---KDISFYNDFNIIVLGLDSIEARSYINA 77 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~---~~~~~~~~~DlVi~a~Dn~~~r~~in~ 77 (376)
+|+||+|||||||||+++|+|++||++|+++++++||+++|+++..++.+ ++.+|+++||+||+|+||+++|+++|+
T Consensus 31 ~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~ 110 (234)
T cd01484 31 MDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNG 110 (234)
T ss_pred CCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCChhhhchHHHHhCCCEEEECCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999953 457899999999999999999999999
Q ss_pred HHHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhh
Q 017136 78 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI 157 (376)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~ 157 (376)
+|+ ..++|+|++|+.|++|+++++.|+.++||+|.+ +|+++++|.||++++|+.|+|||+||+.+
T Consensus 111 ~c~-------------~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~--~~~~~~~p~Cti~~~P~~~~hci~~a~~~ 175 (234)
T cd01484 111 MLI-------------FLIVPLIESGTEGFKGNAQVILPGMTECIECTL--YPPQKNFPMCTIASMPRLPEHCIEWARML 175 (234)
T ss_pred HHH-------------HcCCCEEEEcccCCceEEEEEcCCCCCCcccCC--CCCCCCCCccccCCCCCCchHHHHHHHHH
Confidence 997 678999999999999999999999999999997 57788999999999999999999999999
Q ss_pred hhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHH
Q 017136 158 KWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETL 227 (376)
Q Consensus 158 ~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~Eal 227 (376)
+| ||+.|++||+++|++||++|||++.+++++++|+|||||||+||||+|||+++.|++
T Consensus 176 ~~-----------d~~~~~~~i~~~a~~ra~~~~i~~~~~~~~~~i~~~iipai~tTnaiia~~~~~e~~ 234 (234)
T cd01484 176 QW-----------DDPEHIQFIFQASNERASQYNIRGVTYFLTKGVAGRIIPAVATTNAVVAGVCALEVF 234 (234)
T ss_pred Hh-----------CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhcCeecchhhHHHHHHHHHHHhhC
Confidence 98 789999999999999999999999999999999999999999999999999999974
No 9
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=1.2e-33 Score=263.59 Aligned_cols=182 Identities=25% Similarity=0.460 Sum_probs=153.9
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
.|.|+.||||||+||+++|+|++||++|+++|+++||+++|+++...+++.+ .++++++|+||+|+||+++|.++|++|
T Consensus 56 ~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~ 135 (240)
T TIGR02355 56 FDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQC 135 (240)
T ss_pred CCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999988655 678999999999999999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEe-CCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhh
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII-PGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 158 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~-p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~ 158 (376)
+ +.++|+|.+++.|+.|++.++. +..++||+|+.+..+... +.|
T Consensus 136 ~-------------~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~C~~~~~~~~~--~~~-------------------- 180 (240)
T TIGR02355 136 F-------------AAKVPLVSGAAIRMEGQVSVFTYQDGEPCYRCLSRLFGENA--LSC-------------------- 180 (240)
T ss_pred H-------------HcCCCEEEEEecccEeEEEEEecCCCCCccccccccCCCCC--CCc--------------------
Confidence 7 6899999999999999998776 446899999865332110 001
Q ss_pred hhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCccc
Q 017136 159 WDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS 238 (376)
Q Consensus 159 ~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l~ 238 (376)
...+.++|+++++|+++++|++|+|+|.++++.
T Consensus 181 -----------------------------------------------~~~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~ 213 (240)
T TIGR02355 181 -----------------------------------------------VEAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLS 213 (240)
T ss_pred -----------------------------------------------cccCccchHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 012457889999999999999999999877775
Q ss_pred -ccccccccccceeeeeecccCCCCccc
Q 017136 239 -NYLTYNGVAGLHIKVTEFVKDKDCLVC 265 (376)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~C~vC 265 (376)
..+.||..... ...++++++|+|++|
T Consensus 214 g~ll~~d~~~~~-~~~~~~~~~~~C~~C 240 (240)
T TIGR02355 214 GKILMIDAMTMS-FREMKLPKNPTCPVC 240 (240)
T ss_pred CeEEEEECCCCE-EEEEeccCCccCCCC
Confidence 55667766544 357788999999999
No 10
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=2e-33 Score=279.34 Aligned_cols=186 Identities=26% Similarity=0.318 Sum_probs=159.8
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
.|+||.|||||||||+++|||++||++|+++|+++||+++|+++..++++.+ .++++++|+||+|+||+++|.++|++|
T Consensus 70 ~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 70 FDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999998755 688999999999999999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhhh
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKW 159 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~~ 159 (376)
+ +.++|+|.+++.|+.||+.++.|+.++||+|+++..|++...+.|..
T Consensus 150 ~-------------~~~~p~v~~~~~g~~g~~~v~~~~~~~c~~c~~~~~~~~~~~~~c~~------------------- 197 (390)
T PRK07411 150 V-------------LLNKPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEPPPPGMVPSCAE------------------- 197 (390)
T ss_pred H-------------HcCCCEEEEEEccCEEEEEEECCCCCCChHHhcCCCCCcccCCCCcc-------------------
Confidence 7 67899999999999999999988889999999865444333444411
Q ss_pred hhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCccc-
Q 017136 160 DEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS- 238 (376)
Q Consensus 160 ~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l~- 238 (376)
.+.+.++.+++|+++|+|++|+|+|.+.++.
T Consensus 198 ------------------------------------------------~gvlg~~~~~~g~~~a~eaik~l~g~~~~l~~ 229 (390)
T PRK07411 198 ------------------------------------------------GGVLGILPGIIGVIQATETIKIILGAGNTLSG 229 (390)
T ss_pred ------------------------------------------------CCcCcchHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 1345678899999999999999999877775
Q ss_pred ccccccccccceeeeeecccCCCCcccCC
Q 017136 239 NYLTYNGVAGLHIKVTEFVKDKDCLVCGP 267 (376)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~C~vC~~ 267 (376)
..+.||+..+.. ..+++.++|+|++|..
T Consensus 230 ~l~~~d~~~~~~-~~~~~~~~~~c~~i~~ 257 (390)
T PRK07411 230 RLLLYNALDMKF-RELKLRPNPERPVIEK 257 (390)
T ss_pred eEEEEECCCCce-eEEeccCCCCCCcccc
Confidence 556778766544 4777888999999764
No 11
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=1.4e-32 Score=257.29 Aligned_cols=179 Identities=23% Similarity=0.437 Sum_probs=152.6
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
+|+||.|||+|||||+++|||++||++|+++|+++||+++|+++...+++.+ .++++++|+||+|+||+++|.++|++|
T Consensus 64 ~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~ 143 (245)
T PRK05690 64 FDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRAC 143 (245)
T ss_pred CCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999998755 678999999999999999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCC-CCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhh
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGV-TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 158 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~-t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~ 158 (376)
+ +.++|+|.+++.|+.|++.++.|+. ++||+|.++..++.. ..|.
T Consensus 144 ~-------------~~~ip~v~~~~~g~~G~v~~~~~~~~~~c~~c~~~~~~~~~--~~~~------------------- 189 (245)
T PRK05690 144 F-------------AAKKPLVSGAAIRMEGQVTVFTYQDDEPCYRCLSRLFGENA--LTCV------------------- 189 (245)
T ss_pred H-------------HhCCEEEEeeeccCCceEEEEecCCCCceeeeccCCCCCCC--CCcc-------------------
Confidence 7 6789999999999999999999874 899999975322110 0110
Q ss_pred hhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCccc
Q 017136 159 WDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS 238 (376)
Q Consensus 159 ~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l~ 238 (376)
-.+.++|+++++|+++|+|++|+|+|.++++.
T Consensus 190 ------------------------------------------------~~gv~~~~~~~~~~~~a~e~ik~l~g~~~~l~ 221 (245)
T PRK05690 190 ------------------------------------------------EAGVMAPLVGVIGSLQAMEAIKLLTGYGEPLS 221 (245)
T ss_pred ------------------------------------------------cCCccchHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 12567889999999999999999999887775
Q ss_pred -ccccccccccceeeeeecccCCCC
Q 017136 239 -NYLTYNGVAGLHIKVTEFVKDKDC 262 (376)
Q Consensus 239 -~~~~~~~~~~~~~~~~~~~~~~~C 262 (376)
..+.||...... ..+++.++|+|
T Consensus 222 g~l~~~d~~~~~~-~~~~~~~~~~C 245 (245)
T PRK05690 222 GRLLLYDAMTMQF-REMKLKRDPGC 245 (245)
T ss_pred CeEEEEECCCCEE-EEEEcCCCcCC
Confidence 456677766544 57788888888
No 12
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=8.8e-33 Score=271.68 Aligned_cols=183 Identities=24% Similarity=0.354 Sum_probs=157.4
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
.|+||.|||||||||+++|+|++||++|+++|+++||+++|+++..+++..+ .++++++|+||+|+||+.+|.++|++|
T Consensus 60 ~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 60 DDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred CCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999998655 688999999999999999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhhh
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKW 159 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~~ 159 (376)
+ +.++|||.+++.|+.|++.++.|+.++||+|+++..|++...+.|..
T Consensus 140 ~-------------~~~ip~v~~~~~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~c~~------------------- 187 (355)
T PRK05597 140 A-------------RLGIPHVWASILGFDAQLSVFHAGHGPIYEDLFPTPPPPGSVPSCSQ------------------- 187 (355)
T ss_pred H-------------HcCCCEEEEEEecCeEEEEEEcCCCCCCHHHhCCCCCCccCCCCccc-------------------
Confidence 7 68999999999999999999999989999999865444444444421
Q ss_pred hhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCccc-
Q 017136 160 DEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS- 238 (376)
Q Consensus 160 ~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l~- 238 (376)
.+.+.|+.+++|+++|+|++|+|+|.+.++.
T Consensus 188 ------------------------------------------------~gv~g~~~~~~g~~~a~e~ik~l~g~~~~l~~ 219 (355)
T PRK05597 188 ------------------------------------------------AGVLGPVVGVVGSAMAMEALKLITGVGTPLIG 219 (355)
T ss_pred ------------------------------------------------cCcchhHHHHHHHHHHHHHHHHHhCCCCcCcC
Confidence 2456789999999999999999999877775
Q ss_pred ccccccccccceeeeeecccCCCCcc
Q 017136 239 NYLTYNGVAGLHIKVTEFVKDKDCLV 264 (376)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~C~v 264 (376)
..+.||..... ...+++.++|+|..
T Consensus 220 ~l~~~d~~~~~-~~~~~~~~~~~~~~ 244 (355)
T PRK05597 220 KLGYYDSLDGT-WEYIPVVGNPAVLE 244 (355)
T ss_pred eEEEEECCCCe-EEEEeccCCCCCcc
Confidence 45667776543 34677888888853
No 13
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=1.8e-32 Score=270.26 Aligned_cols=206 Identities=24% Similarity=0.320 Sum_probs=170.1
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
.|+|++|||||||||+++|+|++||++++++|+++||+++|+++..++++.+ .++++++|+||+|+||+++|.++|++|
T Consensus 73 ~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 73 DDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred CCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999998755 678999999999999999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEeCC---CCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhh
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPG---VTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHL 156 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~---~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~ 156 (376)
+ +.++|+|.+++.|+.|++.++.|+ .++||+|+++..|+....+.|.
T Consensus 153 ~-------------~~~iP~v~~~~~g~~G~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c~----------------- 202 (370)
T PRK05600 153 E-------------ITGTPLVWGTVLRFHGELAVFNSGPDHRGVGLRDLFPEQPSGDSIPDCA----------------- 202 (370)
T ss_pred H-------------HcCCCEEEEEEecCEEEEEEEecCCCCCCCCcHhhCCCCCccccCCCCc-----------------
Confidence 7 689999999999999999998876 3789999986433333333331
Q ss_pred hhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCc
Q 017136 157 IKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKT 236 (376)
Q Consensus 157 ~~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~ 236 (376)
..+.++|+.+++|+++|+|++|+|+|.+.+
T Consensus 203 --------------------------------------------------~~gvlg~~~~~ig~~~a~eaik~l~g~g~~ 232 (370)
T PRK05600 203 --------------------------------------------------TAGVLGATTAVIGALMATEAIKFLTGIGDV 232 (370)
T ss_pred --------------------------------------------------cCCcchhHHHHHHHHHHHHHHHHHhCCCCC
Confidence 125578899999999999999999998777
Q ss_pred cc-ccccccccccceeeeeecccCCCCcccCC-cEEEEeCCCCcHHHHHHHHHc
Q 017136 237 LS-NYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEE 288 (376)
Q Consensus 237 l~-~~~~~~~~~~~~~~~~~~~~~~~C~vC~~-~~~~~~~~~~tl~~li~~l~~ 288 (376)
+. ..+.||+..... ..+++.++++|++|.. ..... ....|..++.+.+.+
T Consensus 233 l~g~ll~~d~~~~~~-~~~~~~~~~~c~~~~~~~~~~~-~~~~~~~el~~~l~~ 284 (370)
T PRK05600 233 QPGTVLSYDALTATT-RSFRVGADPARPLVTRLRPSYE-AARTDTTSLIDATLN 284 (370)
T ss_pred CcCcEEEEECCCCEE-EEEEecCCCCCCccccccCcch-hcccCHHHHHHHHhc
Confidence 65 466788776554 5788889999999875 21111 114678888876644
No 14
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=3.3e-32 Score=270.02 Aligned_cols=186 Identities=27% Similarity=0.468 Sum_probs=158.6
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
.|.|+.||||||+||+++|||++||++++++++++||+++|+++...+++.+ .++++++|+||+|+||+++|.++|++|
T Consensus 167 ~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~ 246 (376)
T PRK08762 167 HDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDAC 246 (376)
T ss_pred CCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999998887655 578899999999999999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCC----CCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhh
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGV----TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAH 155 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~----t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~ 155 (376)
+ +.++|+|.+|+.|+.|++.++.|+. ++||+|.++..+.....|.|.
T Consensus 247 ~-------------~~~ip~i~~~~~g~~g~v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~~---------------- 297 (376)
T PRK08762 247 V-------------KLGKPLVYGAVFRFEGQVSVFDAGRQRGQAPCYRCLFPEPPPPELAPSCA---------------- 297 (376)
T ss_pred H-------------HcCCCEEEEEeccCEEEEEEEeCCCCCCCCCCHhhcCCCCCCcccCCCCc----------------
Confidence 7 6889999999999999999999876 899999975433222223331
Q ss_pred hhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCC
Q 017136 156 LIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK 235 (376)
Q Consensus 156 ~~~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~ 235 (376)
..+.++|+++++|+++++|++|+|+|.+.
T Consensus 298 ---------------------------------------------------~~gv~g~~~~~~~~~~a~e~~k~l~g~~~ 326 (376)
T PRK08762 298 ---------------------------------------------------EAGVLGVLPGVIGLLQATEAIKLLLGIGD 326 (376)
T ss_pred ---------------------------------------------------cCCcchhhHHHHHHHHHHHHHHHHhCCCC
Confidence 12346788899999999999999999877
Q ss_pred ccc-ccccccccccceeeeeecccCCCCcccCC
Q 017136 236 TLS-NYLTYNGVAGLHIKVTEFVKDKDCLVCGP 267 (376)
Q Consensus 236 ~l~-~~~~~~~~~~~~~~~~~~~~~~~C~vC~~ 267 (376)
++. .++.||..... ...+++.++|+|++|+.
T Consensus 327 ~~~~~~~~~d~~~~~-~~~~~~~~~~~C~~C~~ 358 (376)
T PRK08762 327 PLTGRLLTFDALAMR-FRELRLPPDPHCPVCAP 358 (376)
T ss_pred CCCCeEEEEECCCCe-EEEEeccCCCCCCCCCC
Confidence 774 56677776654 45778889999999986
No 15
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=2.8e-32 Score=265.99 Aligned_cols=184 Identities=29% Similarity=0.411 Sum_probs=153.3
Q ss_pred CCeecccCCccccCcCcCCCC--CcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVG--KPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINA 77 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG--~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~ 77 (376)
.|.||.|||+||+||+++|+| ++||++|+++|+++||+++|+++..+++..+ .++++++|+||+|+||+++|.++|+
T Consensus 56 ~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~ 135 (338)
T PRK12475 56 RDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLIND 135 (338)
T ss_pred CCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHH
Confidence 589999999999999999985 8999999999999999999999998887554 6788999999999999999999999
Q ss_pred HHHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhh
Q 017136 78 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI 157 (376)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~ 157 (376)
+|+ +.++|||.+|+.|+.|++.++.|+.++||+|+++..|... +.|.
T Consensus 136 ~~~-------------~~~ip~i~~~~~g~~G~~~~~~P~~tpC~~Cl~~~~p~~~--~~c~------------------ 182 (338)
T PRK12475 136 LSQ-------------KYNIPWIYGGCVGSYGVTYTIIPGKTPCLRCLMEHVPVGG--ATCD------------------ 182 (338)
T ss_pred HHH-------------HcCCCEEEEEecccEEEEEEECCCCCCCHHHhcCCCCCCC--CCCc------------------
Confidence 997 6899999999999999999999999999999975422211 1120
Q ss_pred hhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCcc
Q 017136 158 KWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL 237 (376)
Q Consensus 158 ~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l 237 (376)
..+.++|+.+++|+++++|++|+|+|..+++
T Consensus 183 -------------------------------------------------~~Gvl~p~v~~iaslqa~EalK~L~g~~~~l 213 (338)
T PRK12475 183 -------------------------------------------------TAGIIQPAVQIVVAYQVTEALKILVEDFEAL 213 (338)
T ss_pred -------------------------------------------------cCCcCchHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 1234567779999999999999999987777
Q ss_pred cc-cccccccccceeeeeecc--cCCCCcccCC
Q 017136 238 SN-YLTYNGVAGLHIKVTEFV--KDKDCLVCGP 267 (376)
Q Consensus 238 ~~-~~~~~~~~~~~~~~~~~~--~~~~C~vC~~ 267 (376)
.+ .+.||..... ...+.+. ++|+||+||.
T Consensus 214 ~~~Ll~~D~~~~~-~~~~~~~~~k~p~Cp~Cg~ 245 (338)
T PRK12475 214 RETFLSFDIWNNQ-NMSIKVNKQKKDTCPSCGL 245 (338)
T ss_pred cCeEEEEECCCCe-EEEEEeccCCCCCCCcCCC
Confidence 54 4566765544 3355553 5899999996
No 16
>PRK08223 hypothetical protein; Validated
Probab=99.98 E-value=1e-31 Score=253.72 Aligned_cols=185 Identities=22% Similarity=0.216 Sum_probs=151.9
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCH--HHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSI--EARSYINA 77 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~--~~r~~in~ 77 (376)
+|+||+|||||||+|+.+|||++||++|+++++++||+++|+++...+++.+ .++++++|+||||+||+ ++|.++|+
T Consensus 59 ~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~ 138 (287)
T PRK08223 59 FDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFA 138 (287)
T ss_pred CCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999998876 78999999999999986 89999999
Q ss_pred HHHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCC---CCCC--------CCCCceeeccCCCC
Q 017136 78 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWL---FPPQ--------VKFPLCTLAETPRT 146 (376)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~---~p~~--------~~~p~Cti~~~p~~ 146 (376)
+|+ +.++|+|.+++.|+.|++.++.|+ ++||+|.++. .|++ ...|.|.-.+....
T Consensus 139 ~c~-------------~~~iP~V~~~~~g~~gqv~v~~p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl~~ 204 (287)
T PRK08223 139 ACQ-------------QRGIPALTAAPLGMGTALLVFDPG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYLAD 204 (287)
T ss_pred HHH-------------HcCCCEEEEeccCCeEEEEEEcCC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCcccc
Confidence 997 689999999999999999999996 8999999876 2321 34556643332210
Q ss_pred chhhHhHhhhhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHH
Q 017136 147 AAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALET 226 (376)
Q Consensus 147 ~~hci~~a~~~~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~Ea 226 (376)
+ ++ | ..-..-.|.+.+++.++|+++|.|+
T Consensus 205 ~--~~-------~------------------------------------------~~~~~~~p~~g~~~g~~g~~~a~E~ 233 (287)
T PRK08223 205 P--SR-------V------------------------------------------DLENRTGPSTGLACQLCAGVVATEV 233 (287)
T ss_pred c--cc-------c------------------------------------------ccccccCCCccchHHHHHHHHHHHH
Confidence 0 00 0 0111235888999999999999999
Q ss_pred HHHhccCCCcc--cccccccccccce
Q 017136 227 LKIASGCSKTL--SNYLTYNGVAGLH 250 (376)
Q Consensus 227 lK~L~g~~~~l--~~~~~~~~~~~~~ 250 (376)
+|+|+|.++++ ..++.||+..+..
T Consensus 234 ik~l~g~g~~~~~~~~~~~d~~~~~~ 259 (287)
T PRK08223 234 LKILLGRGRVYAAPWFHQFDAYRSRY 259 (287)
T ss_pred HHHHhCCCCcCCCCeEEEEEcCCceE
Confidence 99999988775 3567788766543
No 17
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.98 E-value=1.4e-31 Score=266.60 Aligned_cols=183 Identities=25% Similarity=0.359 Sum_probs=154.9
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
+|+||.|||||||||+++|||++||++|+++|+++||+++|+++..+++..+ .++++++|+||+|+||+.+|.++|++|
T Consensus 74 ~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 153 (392)
T PRK07878 74 FDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAA 153 (392)
T ss_pred CCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999998755 678999999999999999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEeC----CCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhh
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIP----GVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAH 155 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p----~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~ 155 (376)
+ +.++|||.+++.|+.|+++++.+ +.++||+|+++..++....+.|.-
T Consensus 154 ~-------------~~~~p~v~~~~~g~~G~v~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~--------------- 205 (392)
T PRK07878 154 V-------------LAGKPYVWGSIYRFEGQASVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCAE--------------- 205 (392)
T ss_pred H-------------HcCCCEEEEEeccCEEEEEEEecCCCCCCCCeeeeecCCCCCccCCCCCcc---------------
Confidence 7 67899999999999999998874 378999999764333333333310
Q ss_pred hhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCC
Q 017136 156 LIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK 235 (376)
Q Consensus 156 ~~~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~ 235 (376)
.+.+.++.+++|+++|+|++|+|+|.+.
T Consensus 206 ----------------------------------------------------~gv~g~~~~~~g~~~a~e~ik~l~g~~~ 233 (392)
T PRK07878 206 ----------------------------------------------------GGVLGVLCASIGSIMGTEAIKLITGIGE 233 (392)
T ss_pred ----------------------------------------------------CCccchHHHHHHHHHHHHHHHHHhCCCC
Confidence 2346788899999999999999999877
Q ss_pred ccc-ccccccccccceeeeeecccCCCCcc
Q 017136 236 TLS-NYLTYNGVAGLHIKVTEFVKDKDCLV 264 (376)
Q Consensus 236 ~l~-~~~~~~~~~~~~~~~~~~~~~~~C~v 264 (376)
++. ..+.||...... ..+++.++|+|+.
T Consensus 234 ~~~~~l~~~d~~~~~~-~~~~~~~~~~C~~ 262 (392)
T PRK07878 234 PLLGRLMVYDALEMTY-RTIKIRKDPSTPK 262 (392)
T ss_pred CCcCcEEEEECCCCce-eeEeeccCCCCCc
Confidence 764 566778766544 3578888999973
No 18
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=99.97 E-value=3.1e-31 Score=258.77 Aligned_cols=184 Identities=27% Similarity=0.399 Sum_probs=153.5
Q ss_pred CCeecccCCccccCcCcCCC--CCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDV--GKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINA 77 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~di--G~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~ 77 (376)
.|.||.|||+||+||+++|+ |++||++|+++++++||+++|+++..++++.+ .++++++|+||+|+||+++|.++|+
T Consensus 56 ~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~ 135 (339)
T PRK07688 56 RDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVND 135 (339)
T ss_pred CCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHH
Confidence 48999999999999999999 46999999999999999999999999987765 6789999999999999999999999
Q ss_pred HHHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhh
Q 017136 78 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI 157 (376)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~ 157 (376)
+|+ +.++|||.+++.|+.|++.++.|+.++||+|+++..|++. +.|.
T Consensus 136 ~~~-------------~~~iP~i~~~~~g~~G~~~~~~p~~~pC~~Cl~~~~~~~~--~~c~------------------ 182 (339)
T PRK07688 136 AAQ-------------KYGIPWIYGACVGSYGLSYTIIPGKTPCLRCLLQSIPLGG--ATCD------------------ 182 (339)
T ss_pred HHH-------------HhCCCEEEEeeeeeeeEEEEECCCCCCCeEeecCCCCCCC--CCCc------------------
Confidence 997 6789999999999999999999999999999976433211 2220
Q ss_pred hhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCcc
Q 017136 158 KWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL 237 (376)
Q Consensus 158 ~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l 237 (376)
..+.++|+++++|+++++|++|+|+|.+.++
T Consensus 183 -------------------------------------------------~~gv~~p~~~~i~~~~a~ealk~l~g~~~~l 213 (339)
T PRK07688 183 -------------------------------------------------TAGIISPAVQIVASYQVTEALKLLVGDYEAL 213 (339)
T ss_pred -------------------------------------------------cCCcccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 0234677889999999999999999987777
Q ss_pred cc-cccccccccceeeeee--cccCCCCcccCC
Q 017136 238 SN-YLTYNGVAGLHIKVTE--FVKDKDCLVCGP 267 (376)
Q Consensus 238 ~~-~~~~~~~~~~~~~~~~--~~~~~~C~vC~~ 267 (376)
.+ .+.||...... ..++ ..++|+||+||.
T Consensus 214 ~~~l~~~d~~~~~~-~~~~~~~~~~~~Cp~Cg~ 245 (339)
T PRK07688 214 RDGLVSFDVWKNEY-SCMNVQKLKKDNCPSCGE 245 (339)
T ss_pred CCeEEEEECCCCeE-EEEEecCCCCCCCCCCCC
Confidence 54 45677665443 2443 346799999996
No 19
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.97 E-value=1.6e-31 Score=251.03 Aligned_cols=186 Identities=27% Similarity=0.449 Sum_probs=160.4
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
+|.||.|||+||.+++++.+|++||++|+.+++++||+++|..|...+...+ .++++++|+|+||+||+.+|+.+|+.|
T Consensus 98 ~DvVe~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~C 177 (427)
T KOG2017|consen 98 YDVVELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVC 177 (427)
T ss_pred cceeehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHH
Confidence 5999999999999999999999999999999999999999999999998776 789999999999999999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhhh
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKW 159 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~~ 159 (376)
+ ..++|+|.|...+|.||+.++.-..+|||+|+++..|++.+...|.
T Consensus 178 V-------------lLgkpLVSgSaLr~EGQLtvYny~~GPCYRClFP~Ppp~~~vt~C~-------------------- 224 (427)
T KOG2017|consen 178 V-------------LLGKPLVSGSALRWEGQLTVYNYNNGPCYRCLFPNPPPPEAVTNCA-------------------- 224 (427)
T ss_pred H-------------HcCCcccccccccccceeEEeecCCCceeeecCCCCcChHHhcccc--------------------
Confidence 8 6799999999999999999887778999999998766555544441
Q ss_pred hhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCcccc
Q 017136 160 DEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN 239 (376)
Q Consensus 160 ~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l~~ 239 (376)
.- |+ +.+.+++||+|+|+|++|++.|-++++..
T Consensus 225 -----------------------------dg-----------GV-------lGpv~GviG~mQALE~iKli~~~~~~~s~ 257 (427)
T KOG2017|consen 225 -----------------------------DG-----------GV-------LGPVTGVIGCMQALETIKLIAGIGESLSG 257 (427)
T ss_pred -----------------------------cC-----------ce-------eecchhhhhHHHHHHHHHHHHccCccCCc
Confidence 11 22 33556899999999999999998877764
Q ss_pred -cccccccccceeeeeec-ccCCCCcccCC
Q 017136 240 -YLTYNGVAGLHIKVTEF-VKDKDCLVCGP 267 (376)
Q Consensus 240 -~~~~~~~~~~~~~~~~~-~~~~~C~vC~~ 267 (376)
.+.|++..+. ...+++ .+.++|.+||.
T Consensus 258 ~lllfdg~~~~-~r~irlR~r~~~C~~Cg~ 286 (427)
T KOG2017|consen 258 RLLLFDGLSGH-FRTIRLRSRRPKCAVCGK 286 (427)
T ss_pred ceEEEecccce-eEEEEeccCCCCCcccCC
Confidence 5678988874 345665 46789999996
No 20
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=99.97 E-value=5.6e-31 Score=249.89 Aligned_cols=223 Identities=20% Similarity=0.262 Sum_probs=164.3
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
.|.|+.|||+|||+|+++|||++||++++++|+++||.++|+++...+ +.+++.+||+||+|.|+.++|.++|++|+
T Consensus 51 ~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~~---~~~~l~~fdvVV~~~~~~~~~~~in~~c~ 127 (286)
T cd01491 51 TKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGPL---TTDELLKFQVVVLTDASLEDQLKINEFCH 127 (286)
T ss_pred CCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEeccC---CHHHHhcCCEEEEecCCHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999998763 45789999999999999999999999997
Q ss_pred hccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhh-----
Q 017136 81 SFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAH----- 155 (376)
Q Consensus 81 ~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~----- 155 (376)
+.++|+|.+++.|+.|++++ +.++||.|.-+...++.+.+.|+|.+.+....||+.-.+
T Consensus 128 -------------~~~ipfI~a~~~G~~G~vf~---dfg~~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~ 191 (286)
T cd01491 128 -------------SPGIKFISADTRGLFGSIFC---DFGDEFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRHGFED 191 (286)
T ss_pred -------------HcCCEEEEEeccccEEEEEe---cCCCeEEEeCCCCCcCCccceeeeecCCceEEEEECCcccCCcC
Confidence 68999999999999999987 346899998554456677888888876666667764444
Q ss_pred --hhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCC---cccccccccccccccccchHHHHHHHHHHHHHHHHh
Q 017136 156 --LIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPG---VTYSLTQGVVKNIIPAIASTNAIISAACALETLKIA 230 (376)
Q Consensus 156 --~~~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~---~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L 230 (376)
++.|.+..+-.+.+...+--+. ......|.|.. -+....-|++..+- ++|++|++||++|||++|.+
T Consensus 192 gd~V~f~ev~gm~~lN~~~~~~v~------~~~~~~f~i~d~~~~~~y~~gG~~~qvK--~~~~~~~~g~~~~q~~~~~~ 263 (286)
T cd01491 192 GDYVTFSEVEGMTELNGCEPRKIK------VKGPYTFSIGDTSSFSEYIRGGIVTQVK--LSPMAAFFGGLAAQEVLKAC 263 (286)
T ss_pred CCEEEEeccCcchhhCCCccEEEE------ECCCCeEEECcCcCcCccccCcEEEEEe--cccHHHHhhhHHHHHHHHHc
Confidence 3455554321111000000000 00000011110 00111223333322 88999999999999999999
Q ss_pred ccCCCcccccccccccccce
Q 017136 231 SGCSKTLSNYLTYNGVAGLH 250 (376)
Q Consensus 231 ~g~~~~l~~~~~~~~~~~~~ 250 (376)
+|+..|+.+|++||..+.++
T Consensus 264 ~~~~~p~~q~~~~~~~~~l~ 283 (286)
T cd01491 264 SGKFTPLKQWLYFDALECLP 283 (286)
T ss_pred CCCCCceeeEEEecHHHhcC
Confidence 99999999999999876554
No 21
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=99.97 E-value=3.7e-30 Score=234.37 Aligned_cols=115 Identities=32% Similarity=0.530 Sum_probs=108.2
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
.|+|+.|||+|||||+++|+|++||++++++++++||+++++++...+.+.+ .++++++|+||+|+||.++|.++|++|
T Consensus 53 ~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~ 132 (202)
T TIGR02356 53 DDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC 132 (202)
T ss_pred CCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999987655 678999999999999999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEeCC-CCCeeeeccCC
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPG-VTPCFECTIWL 128 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~-~t~c~~C~~~~ 128 (376)
+ +.++|||++|+.|+.|++.++.|+ .++||+|.++.
T Consensus 133 ~-------------~~~ip~i~~~~~g~~G~~~~~~p~~~~~c~~c~~~~ 169 (202)
T TIGR02356 133 V-------------ALGTPLISAAVVGFGGQLMVFDPGGEGPCLRCLFPD 169 (202)
T ss_pred H-------------HcCCCEEEEEeccCeEEEEEEeCCCCCCChhhcCCC
Confidence 7 689999999999999999999998 79999999753
No 22
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=99.97 E-value=9.4e-30 Score=236.04 Aligned_cols=167 Identities=32% Similarity=0.516 Sum_probs=143.0
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
.|.|+.|||||||||+++|+|++||++++++|+++||+++|+++..++...+ .++++++|+||+|+|+.++|.++|++|
T Consensus 53 ~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~ 132 (228)
T cd00757 53 DDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDAC 132 (228)
T ss_pred CCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999986544 678899999999999999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhhh
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKW 159 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~~ 159 (376)
+ +.++|+|++|+.|+.|++.++.|+.++||.|.+...+... .+.|
T Consensus 133 ~-------------~~~ip~i~~g~~g~~g~v~~~~p~~~~c~~c~~~~~~~~~-~~~~--------------------- 177 (228)
T cd00757 133 V-------------KLGKPLVSGAVLGFEGQVTVFIPGEGPCYRCLFPEPPPPG-VPSC--------------------- 177 (228)
T ss_pred H-------------HcCCCEEEEEeccCEEEEEEECCCCCCCccccCCCCCCCC-CCcc---------------------
Confidence 7 6789999999999999999999999999999875322110 0111
Q ss_pred hhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCcc-c
Q 017136 160 DEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL-S 238 (376)
Q Consensus 160 ~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l-~ 238 (376)
...|+++|+++++|+++++|++|+|+|...++ .
T Consensus 178 ----------------------------------------------~~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~ 211 (228)
T cd00757 178 ----------------------------------------------AEAGVLGPLVGVIGSLQALEALKILLGIGEPLAG 211 (228)
T ss_pred ----------------------------------------------ccCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcC
Confidence 12477899999999999999999999987665 4
Q ss_pred cccccccccc
Q 017136 239 NYLTYNGVAG 248 (376)
Q Consensus 239 ~~~~~~~~~~ 248 (376)
.++.||..+.
T Consensus 212 ~~~~~d~~~~ 221 (228)
T cd00757 212 RLLLFDALSM 221 (228)
T ss_pred eEEEEECCCC
Confidence 5667776554
No 23
>PRK08328 hypothetical protein; Provisional
Probab=99.97 E-value=9.1e-30 Score=236.34 Aligned_cols=163 Identities=28% Similarity=0.370 Sum_probs=140.6
Q ss_pred CCeecccCCccccCcCcCCCCC-cHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGK-PKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAV 78 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~-~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~ 78 (376)
+|.|+.|||||||+|+++|+|+ +|+++|+++++++||+++|+++...+.+.+ .++++++|+||+|+||.++|.++|++
T Consensus 59 ~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~ 138 (231)
T PRK08328 59 EQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDY 138 (231)
T ss_pred CCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHH
Confidence 5899999999999999999999 699999999999999999999998887655 57899999999999999999999999
Q ss_pred HHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhh
Q 017136 79 ACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 158 (376)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~ 158 (376)
|+ +.++|+|++|+.|+.|++.++.|+.|+||+|.++..++ .|
T Consensus 139 ~~-------------~~~ip~i~g~~~g~~G~v~~~~p~~~~c~~~~~~~~~~-----~~-------------------- 180 (231)
T PRK08328 139 AH-------------KKGIPLVHGAVEGTYGQVTTIVPGKTKRLREIFPKVKK-----KK-------------------- 180 (231)
T ss_pred HH-------------HcCCCEEEEeeccCEEEEEEECCCCCCCHHHhCCCCCC-----cc--------------------
Confidence 97 68999999999999999999999999999998753110 00
Q ss_pred hhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCccc
Q 017136 159 WDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS 238 (376)
Q Consensus 159 ~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l~ 238 (376)
.-.|.++|+++++|+++++|++|+|+|.+.++.
T Consensus 181 -----------------------------------------------~~~~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~ 213 (231)
T PRK08328 181 -----------------------------------------------GKFPILGATAGVIGSIQAMEVIKLITGYGEPLL 213 (231)
T ss_pred -----------------------------------------------ccCCcCchHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 002457899999999999999999999877775
Q ss_pred c-ccccccccc
Q 017136 239 N-YLTYNGVAG 248 (376)
Q Consensus 239 ~-~~~~~~~~~ 248 (376)
+ .+.+|....
T Consensus 214 ~~l~~~d~~~~ 224 (231)
T PRK08328 214 NKLLIVDLANN 224 (231)
T ss_pred CeEEEEECCCC
Confidence 4 455666553
No 24
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.96 E-value=1.9e-28 Score=230.79 Aligned_cols=186 Identities=34% Similarity=0.596 Sum_probs=153.6
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
+|+||+|||+||++|+++|+|++|+++|++.++++||.++++++...+...+ .++++++|+|++|+||+++|..+|++|
T Consensus 62 ~d~v~~snL~rq~~~~~~dig~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~ 141 (254)
T COG0476 62 FDTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDAC 141 (254)
T ss_pred CCcccccccCceeeecccccCCcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999998876 589999999999999999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEeCC-CCCeeeeccCCCCCCCCCC-ceeeccCCCCchhhHhHhhhh
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPG-VTPCFECTIWLFPPQVKFP-LCTLAETPRTAAHCIEYAHLI 157 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~-~t~c~~C~~~~~p~~~~~p-~Cti~~~p~~~~hci~~a~~~ 157 (376)
+ +.++||+++|+.|+.|+++++.|+ .++||+|+++..|++...+ .|.
T Consensus 142 ~-------------~~~~pli~~~~~~~~g~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~c~------------------ 190 (254)
T COG0476 142 V-------------KLGIPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFPEKPPPGLVPTSCD------------------ 190 (254)
T ss_pred H-------------HhCCCeEeeeeccceEEEEEEecCCCCCcccccCCCCCCccccccccc------------------
Confidence 7 678999999999999999999999 5999999987655433222 121
Q ss_pred hhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCC-Cc
Q 017136 158 KWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCS-KT 236 (376)
Q Consensus 158 ~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~-~~ 236 (376)
.. .-+.++..+++++++.|++|+++|.. .+
T Consensus 191 -------------------------------~~------------------gv~~~~~~~~~~~~~~~~~k~~~g~~~~~ 221 (254)
T COG0476 191 -------------------------------EA------------------GVLGPLVGVVGSLQALEAIKLLTGIGLEP 221 (254)
T ss_pred -------------------------------cC------------------CccccccchhhhHHHHHHHHHhcCCCccc
Confidence 01 11334456899999999999999997 55
Q ss_pred c-cccccccccccceeeeeecccCCC-CcccC
Q 017136 237 L-SNYLTYNGVAGLHIKVTEFVKDKD-CLVCG 266 (376)
Q Consensus 237 l-~~~~~~~~~~~~~~~~~~~~~~~~-C~vC~ 266 (376)
+ ...+.|+.............+++. |++|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 253 (254)
T COG0476 222 LIGRLLLYDALDMERFRTLKLRRRPISCPVCG 253 (254)
T ss_pred cccceeeeechhcccchhhhcccCCCCCCcCC
Confidence 4 456667766653444455555665 99997
No 25
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.95 E-value=3.7e-28 Score=234.94 Aligned_cols=208 Identities=15% Similarity=0.143 Sum_probs=153.3
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHH--HHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARS--YINAV 78 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~--~in~~ 78 (376)
.|+||.|||| +||+++|||++|+++|+++|.++||.++|+.+ .++++++|+||+|+||+.+|. |+|++
T Consensus 104 ~D~Ve~SNL~--~L~~~~diG~~K~~~a~~~L~~lnp~v~i~~~--------~~li~~~DlVid~tDn~~~r~L~~iN~a 173 (318)
T TIGR03603 104 KTYFQETAEI--DLYSKEFILKKDIRDLTSNLDALELTKNVDEL--------KDLLKDYNYIIICTEHSNISLLRGLNKL 173 (318)
T ss_pred CCEechhhHH--HHhChhhcCcHHHHHHHHHHHHhCCCCEEeeH--------HHHhCCCCEEEECCCCccHhHHHHHHHH
Confidence 5999999999 99999999999999999999999999999863 357889999999999999995 59999
Q ss_pred HHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhh
Q 017136 79 ACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 158 (376)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~ 158 (376)
|+ +.++|||.|+..|+.|++.++.|+.|+||+|+++........+ .++.
T Consensus 174 c~-------------~~~~PlV~gav~g~~Gqv~~~~P~~t~C~~Cl~~r~~~~~~~~-----~~~~------------- 222 (318)
T TIGR03603 174 SK-------------ETKKPNTIAFIDGPFVFITCTLPPETGCFECLERRLLSRLDWR-----LYGV------------- 222 (318)
T ss_pred HH-------------HHCCCEEEEEEccCEEEEEEEeCCCCCcHHHccchhhcccccc-----cccc-------------
Confidence 97 6899999999999999999988989999999965211000000 0000
Q ss_pred hhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCc-c
Q 017136 159 WDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKT-L 237 (376)
Q Consensus 159 ~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~-l 237 (376)
|..+ .++. .... ...+.+.|+++++|++++.|++ +++|.+.+ +
T Consensus 223 ---------~~~~-------------------~~~~-----~~~~--~~~gv~gp~~giigsl~a~Eai-~i~g~g~~~l 266 (318)
T TIGR03603 223 ---------FTEY-------------------LVKA-----ENNV--STAELIFPLLNIKKNLVVSEIF-AIGSLGTSKF 266 (318)
T ss_pred ---------cccc-------------------cCCC-----CCCC--ccCCeehhHHHHHHHHHHHHHH-HHhCCCCccc
Confidence 0000 0000 0000 0124467788999999999999 99987664 3
Q ss_pred -cccccccccccceeeeeecccCCCCcccCCcEEEEeCC-CCcHHHHHHHH
Q 017136 238 -SNYLTYNGVAGLHIKVTEFVKDKDCLVCGPGVLIELDT-SVTLEKFINLL 286 (376)
Q Consensus 238 -~~~~~~~~~~~~~~~~~~~~~~~~C~vC~~~~~~~~~~-~~tl~~li~~l 286 (376)
...+.++...... ..+++.++|+||+||...++..+. .+.-+++++.+
T Consensus 267 ~g~ll~id~~t~~~-~~~~l~k~p~Cp~CG~~~~~~~~~~~~~~~~~~~~~ 316 (318)
T TIGR03603 267 EGRLLSINLPTLEI-QFQDILKQSCCSTCGTFNKIKFEEQNISTRNIVKEL 316 (318)
T ss_pred CCeEEEEECCCCeE-EEEecCCCCCCcccCCccccchhhhhhhHHHHHHHH
Confidence 4566777766543 577788999999999733444432 45556666655
No 26
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=99.93 E-value=5.8e-26 Score=205.89 Aligned_cols=140 Identities=21% Similarity=0.308 Sum_probs=126.8
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
.|.|+.|||+|||||+++|+|++||++++++|+++||+++|+++...+.+...++++++|+||+|.|+.++|.++|++|+
T Consensus 53 ~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~ 132 (197)
T cd01492 53 DRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELCR 132 (197)
T ss_pred CCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999998886668899999999999999999999999997
Q ss_pred hccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhhhh
Q 017136 81 SFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWD 160 (376)
Q Consensus 81 ~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~~~ 160 (376)
+.++|+|.+|+.|+.|++++..
T Consensus 133 -------------~~~ip~i~~~~~G~~G~v~~d~--------------------------------------------- 154 (197)
T cd01492 133 -------------KLGVKFYATGVHGLFGFVFADL--------------------------------------------- 154 (197)
T ss_pred -------------HcCCCEEEEEecCCEEEEEEec---------------------------------------------
Confidence 6899999999999999986421
Q ss_pred hccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCccccc
Q 017136 161 EVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNY 240 (376)
Q Consensus 161 ~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l~~~ 240 (376)
++|+++++|+++++|++|+++|.+.++.++
T Consensus 155 --------------------------------------------------~~p~~~~~~~~~~~e~~k~~~~~~~~l~~~ 184 (197)
T cd01492 155 --------------------------------------------------LAPVAAVVGGILAQDVINALSKRESPLNNF 184 (197)
T ss_pred --------------------------------------------------cccHHHHHHHHHHHHHHHHHhCCCCccCcE
Confidence 245668999999999999999988888888
Q ss_pred cccccccc
Q 017136 241 LTYNGVAG 248 (376)
Q Consensus 241 ~~~~~~~~ 248 (376)
+.||...+
T Consensus 185 ~~~d~~~~ 192 (197)
T cd01492 185 FVFDGETS 192 (197)
T ss_pred EEEECCCC
Confidence 88887654
No 27
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=99.92 E-value=7.4e-25 Score=198.88 Aligned_cols=100 Identities=15% Similarity=0.197 Sum_probs=92.6
Q ss_pred CCeecccCCccccCcCc--CCCCCcHHHHHHHHHHhhCCCceEEEEEcccc---CcchhccccCcEEEEccCCHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRM--EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE---DKDISFYNDFNIIVLGLDSIEARSYI 75 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~--~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~---~~~~~~~~~~DlVi~a~Dn~~~r~~i 75 (376)
.|+|+.|||+|||||++ +|+|++||++++++|+++||+++|+++...+. +...++++++|+||+|.|+..+|.++
T Consensus 51 ~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l 130 (198)
T cd01485 51 HRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKV 130 (198)
T ss_pred CCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHH
Confidence 58999999999999998 89999999999999999999999999988875 23478999999999999999999999
Q ss_pred HHHHHhccccccCCCcccCCCceEEEeccCCcceeEEE
Q 017136 76 NAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARV 113 (376)
Q Consensus 76 n~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~ 113 (376)
|++|+ +.++|+|.+++.|+.|++++
T Consensus 131 n~~c~-------------~~~ip~i~~~~~G~~G~v~~ 155 (198)
T cd01485 131 NDVCR-------------KHHIPFISCATYGLIGYAFF 155 (198)
T ss_pred HHHHH-------------HcCCCEEEEEeecCEEEEEE
Confidence 99997 68899999999999999864
No 28
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.91 E-value=1.9e-23 Score=214.03 Aligned_cols=112 Identities=25% Similarity=0.312 Sum_probs=98.9
Q ss_pred CCeecccCCccccCcCcCCC---CCcHHHHHHHHHHhhCCCceEEEEEccc-------cCc----------c-hhccccC
Q 017136 1 MDRIEVSNLNRQFLFRMEDV---GKPKAEVAAKRVMERVSGVNIVPHFCRI-------EDK----------D-ISFYNDF 59 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~di---G~~Ka~va~~~l~~~np~v~i~~~~~~i-------~~~----------~-~~~~~~~ 59 (376)
.|+|+.|||+||+||+.+|+ |++||++|+++|+++||+++++++..+| ++. + .++++++
T Consensus 370 ~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~ 449 (664)
T TIGR01381 370 NGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDH 449 (664)
T ss_pred CCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhC
Confidence 59999999999999999999 9999999999999999999999999885 321 2 4688999
Q ss_pred cEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccCCcceeEEEEe------------------CCCCCe
Q 017136 60 NIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII------------------PGVTPC 121 (376)
Q Consensus 60 DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~------------------p~~t~c 121 (376)
|+|++|+||+++|..+|.+|. ..++|+|+++ .|+.|++.... +...+|
T Consensus 450 DvV~d~tDn~esR~L~n~~c~-------------~~~kplI~aA-lGfdg~lvmrhG~~~~~~~~~~~~~~~~~~~~~gC 515 (664)
T TIGR01381 450 DVVFLLLDSREARWLPTVLCS-------------RHKKIAISAA-LGFDSYVVMRHGIGRSESVSDVSSSDSVPYSRLGC 515 (664)
T ss_pred CEEEECCCCHHHHHHHHHHHH-------------HhCCCEEEEE-eccceEEEEEecccccccccccccccccCCCCCCc
Confidence 999999999999999999997 6899999996 89999997651 125789
Q ss_pred eeecc
Q 017136 122 FECTI 126 (376)
Q Consensus 122 ~~C~~ 126 (376)
|.|..
T Consensus 516 YfC~D 520 (664)
T TIGR01381 516 YFCND 520 (664)
T ss_pred cccCC
Confidence 99984
No 29
>PRK14852 hypothetical protein; Provisional
Probab=99.90 E-value=1.8e-23 Score=222.88 Aligned_cols=180 Identities=18% Similarity=0.268 Sum_probs=140.1
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCC--HHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDS--IEARSYINA 77 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn--~~~r~~in~ 77 (376)
+|+||+|||||||+|+.+|||++||++++++++++||.++|+++...+.+.+ .+|++++|+||+|+|+ .++|+++++
T Consensus 364 ~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~ 443 (989)
T PRK14852 364 FDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFN 443 (989)
T ss_pred CCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999998766 7899999999999998 468899999
Q ss_pred HHHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhh
Q 017136 78 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI 157 (376)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~ 157 (376)
.|+ +.+||+|.+|+.|+.|++.++.|+ ++||+|.++..|... .+|-+ +
T Consensus 444 ~c~-------------~~~IP~I~ag~~G~~g~v~v~~p~-~~~~~~~f~~~~~~p-------------~~~~~-----~ 491 (989)
T PRK14852 444 RAL-------------ELGIPVITAGPLGYSCALLVFMPG-GMNFDSYFGIDDDTP-------------PMEGY-----L 491 (989)
T ss_pred HHH-------------HcCCCEEEeeccccCeeEEEEcCC-CCCHHHhCCCCCCCc-------------hHhhh-----h
Confidence 996 789999999999999999999987 599999986533210 11110 0
Q ss_pred hhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCC
Q 017136 158 KWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK 235 (376)
Q Consensus 158 ~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~ 235 (376)
.|. +.. ...+.|+.++ .. + ...+...--|+++.-+.+-||+++.|++|++.|++.
T Consensus 492 ~~~-----l~~-~p~~~~~~~~-~~-------------~---~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~ 546 (989)
T PRK14852 492 RFG-----MGL-APRPAHLGYM-DR-------------R---FVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRRG 546 (989)
T ss_pred hhh-----ccC-Ccchhhhccc-Cc-------------c---cccccccCCCchHHHHHHhHHHHHHHHHHHHhCCCc
Confidence 010 000 0012222222 00 0 113344567999999999999999999999999854
No 30
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=99.90 E-value=3.4e-23 Score=225.06 Aligned_cols=108 Identities=19% Similarity=0.277 Sum_probs=98.4
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
.|.|+.+||+|||||+++|||++||++++++|+++||.|+|+++...+. .+++++||+||+|.|+.+.+..+|++|+
T Consensus 56 ~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~l~---~e~l~~fdvVV~t~~~~~~~~~in~~cr 132 (1008)
T TIGR01408 56 TEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSVPFN---EEFLDKFQCVVLTEMSLPLQKEINDFCH 132 (1008)
T ss_pred CCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEecccCC---HHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999987664 5689999999999999999999999997
Q ss_pred hccccccCCCcccCCC--ceEEEeccCCcceeEEEEeCCCCCeeeeccC
Q 017136 81 SFLEYETDDKPREETI--KPMVDGGTEGFKGHARVIIPGVTPCFECTIW 127 (376)
Q Consensus 81 ~~~~~~~~~~~~~~~~--~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~ 127 (376)
+.+ +|+|.+++.|+.|++++ +.++||.|...
T Consensus 133 -------------~~~~~I~fI~~~~~G~~G~vf~---D~g~~f~~~d~ 165 (1008)
T TIGR01408 133 -------------SQCPPIAFISADVRGLFGSLFC---DFGDEFEVLDT 165 (1008)
T ss_pred -------------HcCCCeEEEEEeecceEEEEEe---cCCCceEEEeC
Confidence 677 99999999999999987 45678887753
No 31
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.90 E-value=5.3e-23 Score=188.56 Aligned_cols=103 Identities=27% Similarity=0.395 Sum_probs=92.2
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
.|.||.+||+||+++ ++|+|++||++++++++++||+++|+++...+++.+ .++++++|+||+|+||+++|.++++.|
T Consensus 60 ~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~ 138 (212)
T PRK08644 60 FDVVEPSNLNRQQYF-ISQIGMPKVEALKENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETV 138 (212)
T ss_pred CCEeccccccccEee-hhhCCChHHHHHHHHHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 589999999999976 789999999999999999999999999999998766 578999999999999999999999999
Q ss_pred HhccccccCCCcccCC-CceEEEeccCCcceeEEEEeCC
Q 017136 80 CSFLEYETDDKPREET-IKPMVDGGTEGFKGHARVIIPG 117 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~~pli~~g~~G~~G~v~~~~p~ 117 (376)
+ +. ++|+|.++..|..|++..+.|.
T Consensus 139 ~-------------~~~~~p~I~~~~~~~~~~~~~~~~~ 164 (212)
T PRK08644 139 L-------------EHPGKKLVAASGMAGYGDSNSIKTR 164 (212)
T ss_pred H-------------HhCCCCEEEeehhhccCCceEEEec
Confidence 7 45 8999998777777777766664
No 32
>PRK14851 hypothetical protein; Provisional
Probab=99.89 E-value=6.5e-23 Score=215.30 Aligned_cols=173 Identities=21% Similarity=0.328 Sum_probs=138.0
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCC--HHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDS--IEARSYINA 77 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn--~~~r~~in~ 77 (376)
+|+||+||||||++|+.+|||++|+++++++++++||+++|+++...+++.+ .+|++++|+||+|+|+ +++|+++|+
T Consensus 75 ~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~ 154 (679)
T PRK14851 75 FDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFN 154 (679)
T ss_pred CCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999999998776 7899999999999997 579999999
Q ss_pred HHHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhh
Q 017136 78 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI 157 (376)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~ 157 (376)
.|+ +.+||+|.+|+.|+.|++.++.|+ +.||.|.+...+.-
T Consensus 155 ~c~-------------~~~iP~i~~g~~G~~g~~~~~~p~-~~~~~~~~~~~~~~------------------------- 195 (679)
T PRK14851 155 MAR-------------EKGIPVITAGPLGYSSAMLVFTPQ-GMGFDDYFNIGGKM------------------------- 195 (679)
T ss_pred HHH-------------HCCCCEEEeecccccceEEEEcCC-CCCHhHhccCCCCC-------------------------
Confidence 997 689999999999999999999997 89999988643220
Q ss_pred hhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCc-------ccccccccccccccccchHHHHHHHHHHHHHHHHh
Q 017136 158 KWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGV-------TYSLTQGVVKNIIPAIASTNAIISAACALETLKIA 230 (376)
Q Consensus 158 ~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~-------~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L 230 (376)
++.+..+.|. +|+.+. +...+ ++.+.--|....-+...+|+.+.|++|+|
T Consensus 196 ------------~~~~~~~~~~----------~g~~p~~~~~~~~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (679)
T PRK14851 196 ------------PEEQKYLRFA----------MGLAPRPTHIKYMDLSKV-DLKGGKGPSLNIACQLCSGMAGTEAVRII 252 (679)
T ss_pred ------------ChHHHHHHHH----------hcCCCcchhhccCcHhhc-CCccCcCCCccHHHHhhhhhHHHHHHHHh
Confidence 0001111111 122111 11111 33344457777788899999999999999
Q ss_pred ccCCC
Q 017136 231 SGCSK 235 (376)
Q Consensus 231 ~g~~~ 235 (376)
.|++.
T Consensus 253 ~~~~~ 257 (679)
T PRK14851 253 LGKGG 257 (679)
T ss_pred hcCCe
Confidence 88754
No 33
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.89 E-value=9.9e-23 Score=181.29 Aligned_cols=112 Identities=24% Similarity=0.340 Sum_probs=100.1
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
.|.|+.+||+||++ ..+|+|++|+++++++++++||+++++++..++++.+ .++++++|+||+|+||.++|..+++.|
T Consensus 31 ~D~v~~sNl~Rq~~-~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~ 109 (174)
T cd01487 31 FDVVEPSNLNRQQY-FLSQIGEPKVEALKENLREINPFVKIEAINIKIDENNLEGLFGDCDIVVEAFDNAETKAMLAESL 109 (174)
T ss_pred CCEEcCcchhcccc-cHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChhhHHHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence 48999999999995 4789999999999999999999999999999998765 678999999999999999999888888
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCC--CCeeeec
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGV--TPCFECT 125 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~--t~c~~C~ 125 (376)
.+ ..++|||.++..|+.|++..+.|+. .+||+|.
T Consensus 110 ~~------------~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (174)
T cd01487 110 LG------------NKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG 145 (174)
T ss_pred HH------------HCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence 62 3489999999999999998887764 5799997
No 34
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.88 E-value=3.4e-22 Score=185.72 Aligned_cols=127 Identities=29% Similarity=0.299 Sum_probs=107.3
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
+|+||+||||||+ |+++|||++||+++++++++++ +++|+++..++.+ .+++.++|+||+|+||+++|.++++.|.
T Consensus 53 ~D~Ve~sNLnRQl-f~~~dVG~~Ka~v~~~ri~~~~-~~~i~a~~~~~~~--~~~~~~~DiVi~avDn~~aR~~l~~~~~ 128 (244)
T TIGR03736 53 DDTVSEANVGRQA-FYPADVGQNKAIVLVNRLNQAM-GTDWTAHPERVER--SSTLHRPDIVIGCVDNRAARLAILRAFE 128 (244)
T ss_pred CCEEccchhhccc-CChhHCCcHHHHHHHHHHHhcc-CceEEEEEeeeCc--hhhhcCCCEEEECCCCHHHHHHHHHHHH
Confidence 6999999999995 7889999999999999999998 8999999998876 3456789999999999999999999997
Q ss_pred hccccccCCCcccCCCceEEEeccC--------Cc-----ceeEEEEeCCCCCeeeeccCCCC-CCCCCCceeec
Q 017136 81 SFLEYETDDKPREETIKPMVDGGTE--------GF-----KGHARVIIPGVTPCFECTIWLFP-PQVKFPLCTLA 141 (376)
Q Consensus 81 ~~~~~~~~~~~~~~~~~pli~~g~~--------G~-----~G~v~~~~p~~t~c~~C~~~~~p-~~~~~p~Cti~ 141 (376)
+. ....+||+++|+. |. +|+.++++|+.|.||.|+....+ ++.+.|+||++
T Consensus 129 ~~----------~~~~~~~ld~Gn~~~~gqv~~g~i~~~~k~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla 193 (244)
T TIGR03736 129 GG----------YSGYAYWLDLGNRADDGQVILGQVPSRAKGENRLRLPHVGELFPELIDPSVDPDDDRPSCSLA 193 (244)
T ss_pred Hh----------cccccceecccCCCCCCcEEEEecccccccCCceecCCchhhCcccccCccCCCCCCCCchHH
Confidence 31 0125899999994 44 57777889999999999875322 66789999976
No 35
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.87 E-value=1.7e-22 Score=185.45 Aligned_cols=186 Identities=26% Similarity=0.443 Sum_probs=146.1
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCc-c-hhc---------c--ccCcEEEEccC
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK-D-ISF---------Y--NDFNIIVLGLD 67 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~-~-~~~---------~--~~~DlVi~a~D 67 (376)
+|+||+.|+||-| |+.+.+|.+|+++|...|..+||+|.++.|+-+|+.- + +.| . +..|+|+.|+|
T Consensus 114 YDkVElANMNRLF-f~P~QaGlsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVD 192 (422)
T KOG2336|consen 114 YDKVELANMNRLF-FQPDQAGLSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVD 192 (422)
T ss_pred cchhhhhcccccc-cCcccccchHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehh
Confidence 5899999999999 8999999999999999999999999999999988741 1 222 1 23899999999
Q ss_pred CHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccC--CcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCC
Q 017136 68 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE--GFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPR 145 (376)
Q Consensus 68 n~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~--G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~ 145 (376)
|++||+.+|.+|- ..+.-|.++|+. ...||++.+.||.|+||.|..+.-- +
T Consensus 193 NfEARMavN~ACN-------------E~~q~WmESGVSEnAVSGHIQ~i~PGetACFACaPPlVV----------A---- 245 (422)
T KOG2336|consen 193 NFEARMAVNQACN-------------ELNQTWMESGVSENAVSGHIQLIVPGETACFACAPPLVV----------A---- 245 (422)
T ss_pred hHHHHHHHHHHHH-------------HhhhHHHHccCccccccceeEEecCCccceecccCceee----------e----
Confidence 9999999999996 567889999986 6789999999999999999743100 0
Q ss_pred CchhhHhHhhhhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHH
Q 017136 146 TAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALE 225 (376)
Q Consensus 146 ~~~hci~~a~~~~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~E 225 (376)
-||...+ .+..|++.. ++.||-+++||+.+|.
T Consensus 246 --------------------------------------------s~IDErT-LKReGVCAA---SLPTTMgvvAG~LVqN 277 (422)
T KOG2336|consen 246 --------------------------------------------SGIDERT-LKREGVCAA---SLPTTMGVVAGFLVQN 277 (422)
T ss_pred --------------------------------------------cCcchhh-hhhcceeee---cCcchHHHHHHHHHHH
Confidence 0222211 123445433 4568899999999999
Q ss_pred HHHHhccCCCcccccccccccccceeeeeecccCCCCcc
Q 017136 226 TLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCLV 264 (376)
Q Consensus 226 alK~L~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~v 264 (376)
.+|+|..-+. .+.|+-|+.....+ .+.++.|||+|..
T Consensus 278 ~LK~LLNFGe-VS~YlGYNal~DFF-P~msmkPNPqCdd 314 (422)
T KOG2336|consen 278 SLKFLLNFGE-VSPYLGYNALSDFF-PTMSMKPNPQCDD 314 (422)
T ss_pred HHHHHhhccc-cchhhcchhHHhhC-ccccCCCCCCCCc
Confidence 9999987654 56788787765544 3667889999884
No 36
>PRK07877 hypothetical protein; Provisional
Probab=99.86 E-value=1.5e-21 Score=205.50 Aligned_cols=112 Identities=22% Similarity=0.292 Sum_probs=101.0
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
+|+||+|||||| +|+..|+|++||++|+++|+++||+++|+++...+++.+ .+|++++|+||||+||+++|.++|+.|
T Consensus 139 ~D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a 217 (722)
T PRK07877 139 FDTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAA 217 (722)
T ss_pred CCEEcccccccc-cCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence 699999999999 589999999999999999999999999999999999776 789999999999999999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEE----EEeCCCCCeeeeccCCC
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHAR----VIIPGVTPCFECTIWLF 129 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~----~~~p~~t~c~~C~~~~~ 129 (376)
+ +.+||+|.++..+ |++. -+.| .++||+|+++..
T Consensus 218 ~-------------~~~iP~i~~~~~~--g~~~~e~~~~~p-~~pc~~cl~~~~ 255 (722)
T PRK07877 218 R-------------ARRIPVLMATSDR--GLLDVERFDLEP-DRPILHGLLGDI 255 (722)
T ss_pred H-------------HcCCCEEEEcCCC--CCcCcceeeeCC-CCceeeccCCCC
Confidence 7 7899999998554 7763 3456 689999998743
No 37
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=99.85 E-value=4.4e-20 Score=184.63 Aligned_cols=110 Identities=18% Similarity=0.236 Sum_probs=99.5
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccC---cchhccccCcEEEEccCCHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED---KDISFYNDFNIIVLGLDSIEARSYINA 77 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~---~~~~~~~~~DlVi~a~Dn~~~r~~in~ 77 (376)
.|.|+.+||+|||+++.+|+|++||++++++|+++||+++++++...+++ .+.+|+++||+||++.++...+..+++
T Consensus 52 ~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~ 131 (425)
T cd01493 52 GSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLAD 131 (425)
T ss_pred CCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999887754 347899999999999999999999999
Q ss_pred HHHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeee
Q 017136 78 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFEC 124 (376)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C 124 (376)
+|+ +.++|+|.+++.|+.|++++..|++ .+.++
T Consensus 132 ~c~-------------~~~iPlI~~~s~G~~G~v~v~~~~h-~i~et 164 (425)
T cd01493 132 VLW-------------SANIPLLYVRSYGLYGYIRIQLKEH-TIVES 164 (425)
T ss_pred HHH-------------HcCCCEEEEecccCEEEEEEEECCe-EEEEC
Confidence 997 6799999999999999999999853 35554
No 38
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.9e-20 Score=173.88 Aligned_cols=226 Identities=18% Similarity=0.203 Sum_probs=156.0
Q ss_pred eecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHHHHHHHHHhc
Q 017136 3 RIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSF 82 (376)
Q Consensus 3 ~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~~~ 82 (376)
.|+...++-|||++.+++|+.||++..++++.+||.|+|.....++.+.+.+||.+||+||..--+.+++..+|.+|+
T Consensus 65 ~Vt~Ed~~~qFli~~~~vg~~raeas~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icr-- 142 (331)
T KOG2014|consen 65 LVTEEDVGAQFLISASSVGQTRAEASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEICR-- 142 (331)
T ss_pred ccchhcCCceeEEchhhhchHHHHHHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHHH--
Confidence 367788999999999999999999999999999999999999999999999999999999988888999999999997
Q ss_pred cccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeee------eccCC-CC---CCCCCCceeeccCCCCchhhHh
Q 017136 83 LEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFE------CTIWL-FP---PQVKFPLCTLAETPRTAAHCIE 152 (376)
Q Consensus 83 ~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~------C~~~~-~p---~~~~~p~Cti~~~p~~~~hci~ 152 (376)
+.+++|+.+++.|+.|+++..+-++ .|.. |.... .. .....++-..-++|..-|-+
T Consensus 143 -----------k~~i~F~a~d~~g~~Gy~F~dL~~h-~y~~~~~~~~~~~~~k~~k~~~~~~~~vk~~~~~~~~~Eal-- 208 (331)
T KOG2014|consen 143 -----------KLNIAFYAGDCFGLCGYAFADLQEH-KYLEEKTKVAKVSQTKRAKVDETETEWVKRKVVFPSVKEAL-- 208 (331)
T ss_pred -----------hcCceEEeccccceeeeeeeehhhh-hhhhhcccccccccccceeeeeccceehhhhhcccCHHHHH--
Confidence 6789999999999999998866532 1111 11000 00 00000111111233322222
Q ss_pred Hhhhhhhhhc-------cCCC--------------CCCCC--ChHHHHHHHHHHHHHHHHhCCCCccccccccccccccc
Q 017136 153 YAHLIKWDEV-------HSGK--------------SFDPD--DPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIP 209 (376)
Q Consensus 153 ~a~~~~~~~~-------~~~~--------------~fd~d--d~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiP 209 (376)
...|... ..+. .=+++ ..+.+..+...-+......++.+..+. ...+.+-+
T Consensus 209 ---~~~~~~k~k~~~rr~~~~~~ll~v~l~f~~s~~r~pg~~~~~d~erl~~I~~ell~s~~i~pd~~~---~f~~~~~~ 282 (331)
T KOG2014|consen 209 ---SVDWTKKEKRKPRRTKKLYFLLPVLLKFRTSEGRDPGETSEEDLERLLQIRNELLESETIIPDELL---EFLSLIFT 282 (331)
T ss_pred ---hcccchhhhhhhhccCcceehHHHHHHHHHhcCCCCccccHHHHHHHHHHHHhhccccccCCchHH---HHHHhccc
Confidence 2233200 0000 00111 122344444433333332233332221 34567788
Q ss_pred ccchHHHHHHHHHHHHHHHHhccCCCcccccccccccccce
Q 017136 210 AIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLH 250 (376)
Q Consensus 210 aiatt~aiiagl~~~EalK~L~g~~~~l~~~~~~~~~~~~~ 250 (376)
.++|++|+|||+++||++|+++++..|++||++|+|..+..
T Consensus 283 ef~Pv~AvVGGivaQevIk~isk~~~Pl~Nff~fdg~~g~g 323 (331)
T KOG2014|consen 283 EFAPVCAVVGGILAQEVIKAISKKGPPLNNFFIFDGETGKG 323 (331)
T ss_pred ccCchhhhhhhHhHHHHHHHhhcCCCcccceEEeecccCce
Confidence 99999999999999999999999999999999999987654
No 39
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.83 E-value=4.9e-20 Score=174.55 Aligned_cols=101 Identities=30% Similarity=0.346 Sum_probs=89.3
Q ss_pred CCeecccCCccccCcCcCC--CCCcHHHHHHHHHHhhCCCceEEEEEcccc----------------Cc-c-hhccccCc
Q 017136 1 MDRIEVSNLNRQFLFRMED--VGKPKAEVAAKRVMERVSGVNIVPHFCRIE----------------DK-D-ISFYNDFN 60 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~d--iG~~Ka~va~~~l~~~np~v~i~~~~~~i~----------------~~-~-~~~~~~~D 60 (376)
.|+|+.|||+||+||+.+| +|++||++|+++|+++||+++|+++...|. +. + .++++++|
T Consensus 31 ~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~D 110 (307)
T cd01486 31 SGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSIPMPGHPISESEVPSTLKDVKRLEELIKDHD 110 (307)
T ss_pred CCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeeccccccccccccccccccCHHHHHHHHhhCC
Confidence 5899999999999999999 999999999999999999999999987661 11 1 57889999
Q ss_pred EEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccCCcceeEEEEe
Q 017136 61 IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII 115 (376)
Q Consensus 61 lVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~ 115 (376)
+||+|+||+++|..+|.+|. ..++|+|++ ..||.|++....
T Consensus 111 vV~d~tDn~esR~L~~~~~~-------------~~~k~~I~a-alGfdg~lvmrh 151 (307)
T cd01486 111 VIFLLTDSRESRWLPTLLSA-------------AKNKLVINA-ALGFDSYLVMRH 151 (307)
T ss_pred EEEECCCCHHHHHHHHHHHH-------------HhCCcEEEE-EeccceEEEEEe
Confidence 99999999999999999997 678999985 679999986543
No 40
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.83 E-value=2.2e-20 Score=159.38 Aligned_cols=100 Identities=37% Similarity=0.567 Sum_probs=90.6
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
.|+|+.+||+||+||+.+|+|++||++++++|+++||+++++++..++.+.+ .++++++|+||+|+|+.++|.++|++|
T Consensus 34 ~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~ 113 (135)
T PF00899_consen 34 DDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKIDEENIEELLKDYDIVIDCVDSLAARLLLNEIC 113 (135)
T ss_dssp SSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHH
T ss_pred CcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecccccccccccccCCCEEEEecCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999996444 678899999999999999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEE
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARV 113 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~ 113 (376)
+ +.++|+|++|+.|+.|+++.
T Consensus 114 ~-------------~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 114 R-------------EYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp H-------------HTT-EEEEEEEETTEEEEEE
T ss_pred H-------------HcCCCEEEEEeecCEEEEEE
Confidence 7 68999999999999999854
No 41
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.82 E-value=6.1e-20 Score=158.05 Aligned_cols=102 Identities=39% Similarity=0.594 Sum_probs=96.0
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
.|.|+.+||+||++++++|+|++||++++++++++||+++|+++...+.+.+ .++++++|+||+|.|+.++|.++|++|
T Consensus 31 ~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~ 110 (143)
T cd01483 31 FDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRAC 110 (143)
T ss_pred CCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecChhhHHHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999998887654 678899999999999999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEe
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII 115 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~ 115 (376)
+ +.++|+|++|+.|+.|+++++.
T Consensus 111 ~-------------~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 111 K-------------ELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred H-------------HcCCCEEEEcCCCcEEEEEEEE
Confidence 7 6799999999999999999876
No 42
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.78 E-value=2.2e-18 Score=156.66 Aligned_cols=110 Identities=25% Similarity=0.404 Sum_probs=86.2
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
.|.||.|||+||+ |..+|+|++|+++++++++++||.++++++..++++.+ .++++++|+||+|+||.++|..+++.|
T Consensus 53 ~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~ 131 (200)
T TIGR02354 53 FDVVEPSNLNRQQ-YKASQVGEPKTEALKENISEINPYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAV 131 (200)
T ss_pred CCEEccccccccc-CChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHH
Confidence 4899999999998 56789999999999999999999999999999998766 678999999999999999999877666
Q ss_pred HhccccccCCCcccCC-CceEEEe-ccCCcceeEEEEeCC--CCCeeee
Q 017136 80 CSFLEYETDDKPREET-IKPMVDG-GTEGFKGHARVIIPG--VTPCFEC 124 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~-~~pli~~-g~~G~~G~v~~~~p~--~t~c~~C 124 (376)
.. .. ..+++.+ |+.|+.. ...+.+. ...||.|
T Consensus 132 ~~------------~~~~~~ii~~~g~~g~~~-~~~~~~~~~~~~~~~~ 167 (200)
T TIGR02354 132 LE------------KYKDKYLIAASGLAGYDD-ANSIKTRKISKHFYLC 167 (200)
T ss_pred HH------------HcCCCcEEEEeccccCCC-CceEEecccCCCEEEc
Confidence 52 22 3454553 4444332 2334332 3568888
No 43
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=99.72 E-value=5.6e-18 Score=126.66 Aligned_cols=67 Identities=40% Similarity=0.680 Sum_probs=56.0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccC
Q 017136 167 SFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGC 233 (376)
Q Consensus 167 ~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~ 233 (376)
+||+||+.|++||+++||+||++|||+..++..+++++++|||+++||+|+++|++++|++|+++|+
T Consensus 1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~~ 67 (67)
T PF02134_consen 1 EFDKDDPLHLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQNC 67 (67)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhcC
Confidence 4899999999999999999999999999999999999999999999999999999999999999874
No 44
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.6e-17 Score=170.96 Aligned_cols=230 Identities=21% Similarity=0.266 Sum_probs=158.5
Q ss_pred eecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHHHHHHHHHhc
Q 017136 3 RIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSF 82 (376)
Q Consensus 3 ~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~~~ 82 (376)
.+..++|+.||+++++||||++|++..++|.++|+.|.|.++.+.++ .+|+++|++||.+--+.+....||+.|+
T Consensus 71 ~~~~~DLssqf~L~E~DigknRA~as~~~LaeLN~yV~V~v~t~~~~---~e~L~~FqvVVlt~~~le~q~~i~~fch-- 145 (1013)
T KOG2012|consen 71 PVQLSDLSSQFYLSEEDIGKNRAEASVEKLAELNNYVPVVVLTGPLT---EEFLSDFQVVVLTDASLEEQLKINDFCH-- 145 (1013)
T ss_pred cccHHhhccceeeeHHhcCCchHHHHHHHHHHhhcceeeEEecCccc---HHHHhCCcEEEEecCchHHHHHHHHHHH--
Confidence 46789999999999999999999999999999999999999887654 6799999999999888999999999997
Q ss_pred cccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeecc-CCC------CchhhHhHhh
Q 017136 83 LEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAE-TPR------TAAHCIEYAH 155 (376)
Q Consensus 83 ~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~-~p~------~~~hci~~a~ 155 (376)
+++|.+|-+-+.|++|+++. +.++-|.|+-....++.+...-.|.. +|- ...|-.+...
T Consensus 146 -----------~~~i~fi~ad~RGLfg~lFC---DFG~eF~v~D~tGeeP~t~mI~~Is~d~pGvvT~ld~~rH~lEdGd 211 (1013)
T KOG2012|consen 146 -----------SHGIAFIAADTRGLFGQLFC---DFGEEFTVLDPTGEEPLTGMIASISQDNPGVVTCLDGARHGFEDGD 211 (1013)
T ss_pred -----------hcCeEEEEeccchhhhhhhc---cCCCceEEeCCCCCcchhhHHhhccCCCCceEEEecCccccCccCC
Confidence 78999999999999999988 55677777643333333322222211 110 1123333333
Q ss_pred hhhhhhcc---------------------------------------------------------CC----CCCCCCC-h
Q 017136 156 LIKWDEVH---------------------------------------------------------SG----KSFDPDD-P 173 (376)
Q Consensus 156 ~~~~~~~~---------------------------------------------------------~~----~~fd~dd-~ 173 (376)
.+.|.+.. .| -.|.+-+ +
T Consensus 212 ~V~FsEveGm~eLN~~~P~kI~v~~p~sf~Igdt~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P~fl~~df~k~~rp 291 (1013)
T KOG2012|consen 212 LVTFSEVEGMTELNDCKPRKITVLGPYSFSIGDTTEFGEYKKGGIFTQVKVPKTISFKSLREALKEPEFLISDFAKFDRP 291 (1013)
T ss_pred EEEEEeeccccccCCCCceEEEEecCceEEeccccchhhhhcCceeEEeecCceEecccHHHhhcCCCeeeecccccccc
Confidence 33333321 01 0122211 2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcc---------------------------cccccccccccccccchHHHHHHHHHHHHH
Q 017136 174 EHMQWVYSEAVKRAELFGIPGVT---------------------------YSLTQGVVKNIIPAIASTNAIISAACALET 226 (376)
Q Consensus 174 ~~l~~i~~~a~~ra~~~~I~~~~---------------------------~~~~~~iag~iiPaiatt~aiiagl~~~Ea 226 (376)
..++-...|.-..++.+|-++.. -.+++.++-..-.-+.|++|++||+++||+
T Consensus 292 ~~lH~af~AL~~F~~~~Gr~P~p~~e~DA~~l~~l~~~i~~~~~~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEv 371 (1013)
T KOG2012|consen 292 PQLHLAFQALHQFQEAHGRLPRPGNEEDAEELVELARDISEGLGLEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEV 371 (1013)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhhhhccccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHH
Confidence 23333333444455455544321 112222222223447789999999999999
Q ss_pred HHHhccCCCccccccccccccccee
Q 017136 227 LKIASGCSKTLSNYLTYNGVAGLHI 251 (376)
Q Consensus 227 lK~L~g~~~~l~~~~~~~~~~~~~~ 251 (376)
+|..+|++.|+.+|++||..+.++.
T Consensus 372 lKa~sgKF~PL~Q~lYfDale~LP~ 396 (1013)
T KOG2012|consen 372 LKACSGKFTPLKQWLYFDALESLPS 396 (1013)
T ss_pred HHhhccCccchhHheehhhHhhCCC
Confidence 9999999999999999999887664
No 45
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.71 E-value=2.7e-17 Score=152.35 Aligned_cols=95 Identities=28% Similarity=0.322 Sum_probs=86.1
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhcc-ccCcEEEEccCCHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFY-NDFNIIVLGLDSIEARSYINAV 78 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~-~~~DlVi~a~Dn~~~r~~in~~ 78 (376)
+|.|+.||||||++++.+|+|++||++++++++++||+++|+++...+.+.+ .+++ .++|+||+|.|+..+|..++++
T Consensus 43 ~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~ 122 (231)
T cd00755 43 FDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAY 122 (231)
T ss_pred CCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999988654 4555 5799999999999999999999
Q ss_pred HHhccccccCCCcccCCCceEEEeccCCcc
Q 017136 79 ACSFLEYETDDKPREETIKPMVDGGTEGFK 108 (376)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~pli~~g~~G~~ 108 (376)
|+ +.++|+|.++..|-+
T Consensus 123 c~-------------~~~ip~I~s~g~g~~ 139 (231)
T cd00755 123 CR-------------KRKIPVISSMGAGGK 139 (231)
T ss_pred HH-------------HhCCCEEEEeCCcCC
Confidence 97 678999999876655
No 46
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=99.69 E-value=4.6e-17 Score=126.49 Aligned_cols=84 Identities=42% Similarity=0.587 Sum_probs=77.3
Q ss_pred EEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHhhcccccceeeeccccccccCC
Q 017136 271 IELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQSDKK 350 (376)
Q Consensus 271 ~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~lv~~g~~~~~~~~~~~~~~d~~ 350 (376)
+++++++||++|++.|++++++++..|+|+.+++.||++.||++++.++.||.|+|+||+.+| ++| .|||++
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL~~~g--~ei------~VtD~~ 72 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKELLSDG--EEI------TVTDPT 72 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTTHHSS--EEE------EEEETT
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHHhcCC--CEE------EEECCC
Confidence 467788999999999999988999999999999999999999999999999999999999999 899 999999
Q ss_pred cceeEEEEEEEe
Q 017136 351 TSCLRKLRVVFR 362 (376)
Q Consensus 351 ~~~~~~~~~~~~ 362 (376)
.|.+++++|+|.
T Consensus 73 lp~~~~~rl~f~ 84 (84)
T PF08825_consen 73 LPISLRLRLKFK 84 (84)
T ss_dssp ESSEEEEEEEEE
T ss_pred CceeEEEEEEeC
Confidence 999999999984
No 47
>PRK06153 hypothetical protein; Provisional
Probab=99.67 E-value=5.2e-16 Score=151.63 Aligned_cols=106 Identities=19% Similarity=0.192 Sum_probs=89.6
Q ss_pred CCeecccCCcccc-CcCcCCCCC--cHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQF-LFRMEDVGK--PKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINA 77 (376)
Q Consensus 1 ~D~Ve~sNLnRQf-lf~~~diG~--~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~~in~ 77 (376)
+|+||.||||||+ +|+.+|+|+ +||+++++++.++|| +|+++...+++.+.+.+.++|+||+|+|+.++|.++|+
T Consensus 208 ~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~--~I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~ 285 (393)
T PRK06153 208 GDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR--GIVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVD 285 (393)
T ss_pred CCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC--eEEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHH
Confidence 5999999999998 679999999 999999999999998 46788888876666678999999999999999999999
Q ss_pred HHHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCC-CCCeeeeccC
Q 017136 78 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPG-VTPCFECTIW 127 (376)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~-~t~c~~C~~~ 127 (376)
+|. +.++|||++|+.=. +.++ .+.|.+|++.
T Consensus 286 ~a~-------------~~gIP~Id~G~~l~------~~~g~l~G~~Rvt~~ 317 (393)
T PRK06153 286 YLE-------------ALGIPFIDVGMGLE------LSNGSLGGILRVTLS 317 (393)
T ss_pred HHH-------------HcCCCEEEeeecce------ecCCCcCcEEEEEEe
Confidence 997 67999999986411 1133 2568888864
No 48
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.64 E-value=5.1e-16 Score=146.43 Aligned_cols=93 Identities=26% Similarity=0.347 Sum_probs=83.7
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhcc-ccCcEEEEccCCHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFY-NDFNIIVLGLDSIEARSYINAV 78 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~-~~~DlVi~a~Dn~~~r~~in~~ 78 (376)
+|.|+.||||||+++..+|+|++||++++++++++||+++|+++...+.+.+ .+++ .++|+||+|.|++.++..++++
T Consensus 62 ~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~ 141 (268)
T PRK15116 62 MDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAY 141 (268)
T ss_pred CCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHH
Confidence 6999999999999999999999999999999999999999999988777554 4555 4799999999999999999999
Q ss_pred HHhccccccCCCcccCCCceEEEeccCC
Q 017136 79 ACSFLEYETDDKPREETIKPMVDGGTEG 106 (376)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~pli~~g~~G 106 (376)
|+ +.++|+|.+|-.|
T Consensus 142 c~-------------~~~ip~I~~gGag 156 (268)
T PRK15116 142 CR-------------RNKIPLVTTGGAG 156 (268)
T ss_pred HH-------------HcCCCEEEECCcc
Confidence 97 6789999987554
No 49
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.60 E-value=3.7e-15 Score=135.64 Aligned_cols=93 Identities=25% Similarity=0.373 Sum_probs=84.7
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhcc-ccCcEEEEccCCHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFY-NDFNIIVLGLDSIEARSYINAV 78 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~-~~~DlVi~a~Dn~~~r~~in~~ 78 (376)
||.|++||+|||.-....+||++|+++++++++.+||+++|+++...+++.+ .+|+ .+||.||||.|++.++..+-..
T Consensus 62 ~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~ 141 (263)
T COG1179 62 MDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAY 141 (263)
T ss_pred cccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHH
Confidence 6999999999999888899999999999999999999999999999999877 5554 5799999999999999999999
Q ss_pred HHhccccccCCCcccCCCceEEEeccCC
Q 017136 79 ACSFLEYETDDKPREETIKPMVDGGTEG 106 (376)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~pli~~g~~G 106 (376)
|+ ++++|+|.+|-.|
T Consensus 142 c~-------------~~ki~vIss~Gag 156 (263)
T COG1179 142 CR-------------RNKIPVISSMGAG 156 (263)
T ss_pred HH-------------HcCCCEEeecccc
Confidence 97 7889999987433
No 50
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.39 E-value=1.6e-12 Score=132.98 Aligned_cols=169 Identities=15% Similarity=0.137 Sum_probs=118.7
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCC--HHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDS--IEARSYINAV 78 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn--~~~r~~in~~ 78 (376)
+|.+ .||||| ||.. ++.|++ +||+++|+.+.....+.-.+.++.+|+||...|+ ..--+|+|++
T Consensus 161 ~D~v-~SNlnR--------IgEl-~e~A~~----~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~a 226 (637)
T TIGR03693 161 TDAE-EHALDR--------IHEL-AEIAEE----TDDALLVQEIDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAF 226 (637)
T ss_pred cccc-chhhhH--------HHHH-HHHHHH----hCCCCceEeccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHH
Confidence 4788 999999 7877 666666 9999999999763333336788999999999994 5667899999
Q ss_pred HHhccccccCCCcccCCC---ceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhh
Q 017136 79 ACSFLEYETDDKPREETI---KPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAH 155 (376)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~---~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~ 155 (376)
|+ +.+ +|++.+|..++.|.++. |++++|++|.+...-
T Consensus 227 cv-------------kegk~~IPai~~G~~~liGPlft--PgkTGCWeCa~~RL~------------------------- 266 (637)
T TIGR03693 227 CK-------------EEGKGFIPAICLKQVGLAGPVFQ--QHGDECFEAAWHRLH------------------------- 266 (637)
T ss_pred HH-------------HcCCCeEEEEEcccceeecceEC--CCCCcHHHHHHHHHH-------------------------
Confidence 97 567 78889999999999865 999999999642100
Q ss_pred hhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCC
Q 017136 156 LIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK 235 (376)
Q Consensus 156 ~~~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~ 235 (376)
+.+ +.... .. .+.-++|.|+++++++.|++|++++...
T Consensus 267 --------------------------------e~~-L~~~~----~s-----~a~sPat~AmlAnviv~ElfK~ITg~~~ 304 (637)
T TIGR03693 267 --------------------------------ESA-LHEEN----SL-----AAFPLAGKAMLANIIVFELFKAAADDEH 304 (637)
T ss_pred --------------------------------HHh-cCCCC----cc-----cccCHHHHHHHHHHHHHHHHHHHhccCc
Confidence 000 00000 00 1111346899999999999999997433
Q ss_pred cc--cccccccccccceeeeeecccCCCCcccCC
Q 017136 236 TL--SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP 267 (376)
Q Consensus 236 ~l--~~~~~~~~~~~~~~~~~~~~~~~~C~vC~~ 267 (376)
.- ++++.+|-.+ +.....+..|.|.|+ |..
T Consensus 305 ~es~gqlv~lDleT-LE~~WH~vvkrPqC~-~~~ 336 (637)
T TIGR03693 305 LEKKNQFFLLDLAT-LEGGWHAFIKHPDAS-CEK 336 (637)
T ss_pred cccCCcEEEEEccc-cccccccCCCCCCCC-CCC
Confidence 22 3445555433 222355677889999 774
No 51
>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....
Probab=99.30 E-value=2.8e-13 Score=92.72 Aligned_cols=44 Identities=43% Similarity=0.962 Sum_probs=34.6
Q ss_pred CCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhhhhhcc
Q 017136 117 GVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH 163 (376)
Q Consensus 117 ~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~~~~~~ 163 (376)
+.|+||+|... ++++++|+|||+++|+.|+|||+||+ ..|+..|
T Consensus 1 ~~Tecy~c~~~--~~~~~~P~CTir~~P~~~~HcI~wAk-~~f~~~F 44 (45)
T PF10585_consen 1 HVTECYECSPD--PPEKSYPVCTIRNFPRTPEHCIEWAK-DLFEELF 44 (45)
T ss_dssp TTS--TTCSGG--GSSSSEEHHHHHTS-SSHHHHHHHHH-HHHHHHH
T ss_pred CccccccCCCC--CCCCCCCcchhhcCCCCchHHHHHHH-HHHHHHh
Confidence 46899999864 66677999999999999999999999 6776553
No 52
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5.7e-11 Score=115.94 Aligned_cols=102 Identities=20% Similarity=0.290 Sum_probs=90.5
Q ss_pred eecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEcccc---CcchhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 3 RIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE---DKDISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 3 ~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~---~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
.|+.++++.+|+...+++||+||+++.+.++++||.|+-......-+ ..+++||.+|++|+.+--+-++-..+.+.|
T Consensus 61 ~v~~~d~g~nF~~~~~~~GksrA~a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l 140 (523)
T KOG2016|consen 61 KVEQGDLGNNFFLDAKSIGKSRAEATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEIL 140 (523)
T ss_pred eeeecchhhHHHHHHHhhchhHHHHHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHH
Confidence 57889999999998999999999999999999999999888766533 346899999999998888888888999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEeCC
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPG 117 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~ 117 (376)
+ ..++|++.+.+.|+.|.++..+..
T Consensus 141 ~-------------~~~vpll~~rs~Gl~G~iRI~ikE 165 (523)
T KOG2016|consen 141 R-------------EANVPLLLTRSYGLAGTIRISIKE 165 (523)
T ss_pred H-------------hcCCceEEEeeecceEEEEEEeee
Confidence 7 789999999999999999987654
No 53
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=99.12 E-value=5.9e-11 Score=92.92 Aligned_cols=57 Identities=30% Similarity=0.482 Sum_probs=37.3
Q ss_pred ccchHHHHHHHHHHHHHHHHhccCCCccc-ccccccccccceeeeeecccCCCCcccCC
Q 017136 210 AIASTNAIISAACALETLKIASGCSKTLS-NYLTYNGVAGLHIKVTEFVKDKDCLVCGP 267 (376)
Q Consensus 210 aiatt~aiiagl~~~EalK~L~g~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~C~vC~~ 267 (376)
.+.++.++||+++|+|++|+|.|.++++. ..+.||+... ....+.+.++++|++|+.
T Consensus 25 Vlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~-~~~~i~~~k~~~C~~C~~ 82 (84)
T PF05237_consen 25 VLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNM-SFRSIRIKKNPDCPVCGP 82 (84)
T ss_dssp B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTT-EEEEEE----TT-TTT--
T ss_pred cccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCC-eEEEEecCCCccCcCcCc
Confidence 46788899999999999999999877765 5567777766 445778889999999985
No 54
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.1e-09 Score=103.02 Aligned_cols=90 Identities=17% Similarity=0.199 Sum_probs=81.2
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hh-ccccCcEEEEccCCHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-IS-FYNDFNIIVLGLDSIEARSYINAV 78 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~-~~~~~DlVi~a~Dn~~~r~~in~~ 78 (376)
||.|.+|.||||-...-+|||.||+...++.++++.|+++|++...-.+..+ .+ ++.+.|.|+||.||++++.-+-+.
T Consensus 106 fdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y 185 (430)
T KOG2018|consen 106 FDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEY 185 (430)
T ss_pred hhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHH
Confidence 6899999999999999999999999999999999999999999887777654 33 456799999999999999999999
Q ss_pred HHhccccccCCCcccCCCceEEEec
Q 017136 79 ACSFLEYETDDKPREETIKPMVDGG 103 (376)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~pli~~g 103 (376)
|+ .+++++|.+-
T Consensus 186 ~~-------------~~~l~Viss~ 197 (430)
T KOG2018|consen 186 CY-------------NHGLKVISST 197 (430)
T ss_pred HH-------------HcCCceEecc
Confidence 97 7899999874
No 55
>PF09358 UBA_e1_C: Ubiquitin-activating enzyme e1 C-terminal domain; InterPro: IPR018965 This presumed domain found at the C terminus of Ubiquitin-activating enzyme e1 proteins is functionally uncharacterised. ; PDB: 3CMM_A.
Probab=98.99 E-value=1.6e-09 Score=91.03 Aligned_cols=88 Identities=20% Similarity=0.306 Sum_probs=60.8
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHhhcccccceeeeccccccc
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVAKDILHVTGVTGQS 347 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~lv~~g~~~~~~~~~~~~~~ 347 (376)
|++++++.++||++|+++++++| ++++.||++|+++||.++ + .++.++||+++|++|++..++.++ .
T Consensus 34 WDr~~v~~~~Tl~~li~~~~~~~--~lev~ml~~g~~~LY~~f-~--~~~~~~rl~~~i~elv~~v~k~~~--------~ 100 (125)
T PF09358_consen 34 WDRIEVNGDMTLQELIDYFKEKY--GLEVTMLSQGVSLLYSSF-P--PPKHKERLKMPISELVEEVTKKPI--------P 100 (125)
T ss_dssp T-EEEEES--BHHHHHHHHHHTT--S-EEEEEEETTEEEEETT----HHHHHHHTTSBHHHHHHHHTSS-----------
T ss_pred eeEEEEcCCCCHHHHHHHHHHHh--CceEEEEEeCCEEEEecC-C--hhhhHHHhCCcHHHHHHHhcCCCC--------C
Confidence 99999998999999999999987 899999999999999988 2 245677999999999886532334 2
Q ss_pred cCCcceeEEEEEEEeccCCccccc
Q 017136 348 DKKTSCLRKLRVVFRGVDGVTDMD 371 (376)
Q Consensus 348 d~~~~~~~~~~~~~~~~~~~~~~~ 371 (376)
+.. .-+.|.|.+.. ++++|.|
T Consensus 101 ~~~--~~l~l~v~~~d-~~~edv~ 121 (125)
T PF09358_consen 101 PGQ--KYLVLEVSCED-EDGEDVE 121 (125)
T ss_dssp TT----EEEEEEEEE--TTS-EE-
T ss_pred CCc--eEEEEEEEEeC-CCCCccC
Confidence 222 36677777775 3334433
No 56
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=98.91 E-value=4.4e-09 Score=82.73 Aligned_cols=81 Identities=23% Similarity=0.303 Sum_probs=60.9
Q ss_pred EEeCC-CCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hcccccceeeecccccccc
Q 017136 271 IELDT-SVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTGQSD 348 (376)
Q Consensus 271 ~~~~~-~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g~~~~~~~~~~~~~~d 348 (376)
+.++. .+||++|++.+.++ .+++..|.++.++++||.+.. +.+..+++|+|++| +.+| ++| .|+|
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~-~Lg~~~P~v~~~~~ilyd~de----~~~~~~l~k~L~elgi~~g--s~L------~v~D 68 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKK-KLGMNEPDVSVGGTILYDSDE----EEYDDNLPKKLSELGIVNG--SIL------TVDD 68 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCC-CS--SSEEEEES-EEEE-SSS----SSSTTCTTSBGGGGT--TT---EE------EEEE
T ss_pred EEEechhCcHHHHHHHHHHh-ccCCCCCEEEeCCCEEEcCCc----chhhhcccCChhHcCCCCC--CEE------EEEE
Confidence 34453 68999999998876 589999999999999998753 45678999999999 9999 899 9999
Q ss_pred CCcceeEEEEEEEecc
Q 017136 349 KKTSCLRKLRVVFRGV 364 (376)
Q Consensus 349 ~~~~~~~~~~~~~~~~ 364 (376)
+.+.+.+.+.|.|++.
T Consensus 69 ~~q~~~~~i~i~h~~~ 84 (87)
T PF14732_consen 69 FDQDFNLEINIKHREE 84 (87)
T ss_dssp TTTTEEEEEEEEE-SS
T ss_pred cCCCcEEEEEEEecCc
Confidence 9999888888888765
No 57
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=98.84 E-value=4.2e-09 Score=97.37 Aligned_cols=64 Identities=8% Similarity=0.154 Sum_probs=56.4
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIE 70 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~ 70 (376)
.|+|+.|||+|||||++ |+|++||++++++++++||.++|+++..+++.. .+|++||.+.-+.+
T Consensus 58 dD~Ve~SNL~RQfl~~~-dvGk~KAeaAa~~L~eLNP~V~V~~i~~rld~~-----n~fqvvV~~~~~le 121 (287)
T PTZ00245 58 EGLVTDADVCTNYLMQG-EAGGTRGARALGALQRLNPHVSVYDAVTKLDGS-----SGTRVTMAAVITEE 121 (287)
T ss_pred CCccchhhhcccccccc-ccCCcHHHHHHHHHHHHCCCcEEEEcccccCCc-----CCceEEEEEcccHH
Confidence 48999999999999987 689999999999999999999999999888663 48899998866554
No 58
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=98.68 E-value=9e-08 Score=95.46 Aligned_cols=95 Identities=31% Similarity=0.384 Sum_probs=75.6
Q ss_pred eecccCCccccCcCcCCC---CCcHHHHHHHHHHhhCCCceEEEEEccccC-------c-------c----hhccccCcE
Q 017136 3 RIEVSNLNRQFLFRMEDV---GKPKAEVAAKRVMERVSGVNIVPHFCRIED-------K-------D----ISFYNDFNI 61 (376)
Q Consensus 3 ~Ve~sNLnRQflf~~~di---G~~Ka~va~~~l~~~np~v~i~~~~~~i~~-------~-------~----~~~~~~~Dl 61 (376)
+|..||=-||-||+.+|. |++||++|+++|++++|.++-+.+...|.- . + +++++.+|+
T Consensus 374 kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDv 453 (669)
T KOG2337|consen 374 KVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDV 453 (669)
T ss_pred eeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcce
Confidence 688999999999999997 599999999999999999999888877641 0 1 357889999
Q ss_pred EEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccCCcceeE
Q 017136 62 IVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHA 111 (376)
Q Consensus 62 Vi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v 111 (376)
|+..+|+.++|..-.-+|. ..++-+|++. .||..++
T Consensus 454 iFLLtDsRESRWLPtll~a-------------~~~KivINaA-LGFDsyl 489 (669)
T KOG2337|consen 454 IFLLTDSRESRWLPTLLAA-------------AKNKIVINAA-LGFDSYL 489 (669)
T ss_pred EEEEeccchhhhhHHHHHh-------------hhcceEeeee-cccceeE
Confidence 9999999999966555553 4567777765 3444433
No 59
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=93.08 E-value=0.16 Score=45.93 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=37.1
Q ss_pred cEEEEccCCHHHH-HHHHHHHHhccccccCCCcccCCCceEEEeccCCcceeEEE-EeCCCCCeeeec
Q 017136 60 NIIVLGLDSIEAR-SYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARV-IIPGVTPCFECT 125 (376)
Q Consensus 60 DlVi~a~Dn~~~r-~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~-~~p~~t~c~~C~ 125 (376)
++|+ +.|-.+.+ ..+|+.++ +.++||+-....|..+.+-. +.|+.|+|++|+
T Consensus 140 ~vVl-~~Dyl~p~L~~~n~~~l-------------~~~~~~l~v~~~~~~~~~gp~~~p~~~~c~~c~ 193 (193)
T TIGR03882 140 TVVL-TDDYLDPELAAINQRAL-------------AAGRPWLLVKPGGVQPWIGPLFKPGKTGCWHCL 193 (193)
T ss_pred EEEE-eCCCCChHHHHHHHHHH-------------HcCCceEEEEeCCceEEECCeecCCCCcccccC
Confidence 4444 33443433 36888886 78999999877776666654 569999999995
No 60
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=73.36 E-value=8.4 Score=33.85 Aligned_cols=61 Identities=18% Similarity=0.252 Sum_probs=46.2
Q ss_pred CCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEcc---CCHHHHHHHHHHHH
Q 017136 18 EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGL---DSIEARSYINAVAC 80 (376)
Q Consensus 18 ~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~---Dn~~~r~~in~~~~ 80 (376)
.-+|.+|++-++ ++.+-.+.-.|+++...++..|...+++ |+|+.|. |....-..+-..|.
T Consensus 68 a~~GEyKv~Fi~-rl~~~~f~r~V~a~pE~it~dNlhll~g-DVvvi~IAGGdT~PvTaaii~ya~ 131 (217)
T COG4015 68 AKVGEYKVDFIK-RLGRVHFGRRVEAFPENITKDNLHLLKG-DVVVICIAGGDTIPVTAAIINYAK 131 (217)
T ss_pred CCcchhHHHHHH-HhCcCCCCceeecccccccccchhhhcC-CEEEEEecCCCcchhHHHHHHHHH
Confidence 346999998654 4555677889999999999988887777 7777664 67776666777775
No 61
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=69.96 E-value=5.1 Score=40.82 Aligned_cols=27 Identities=44% Similarity=0.875 Sum_probs=24.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCCC
Q 017136 168 FDPDDPEHMQWVYSEAVKRAELFGIPG 194 (376)
Q Consensus 168 fd~dd~~~l~~i~~~a~~ra~~~~I~~ 194 (376)
||.+++.|+.|+.++|+++|+.||++.
T Consensus 250 fd~~~~~h~~fv~~~a~l~a~~~~~~~ 276 (435)
T cd01490 250 FDVNNPLHLDFVLAAANLYAEVYGIPG 276 (435)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 567788999999999999999999976
No 62
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=69.82 E-value=29 Score=27.25 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHhhCCCceEEEE--EccccCcc---hhccccCcEEEEccCCH--HHHHHHHHHHHhccccccCCCcccCC
Q 017136 23 PKAEVAAKRVMERVSGVNIVPH--FCRIEDKD---ISFYNDFNIIVLGLDSI--EARSYINAVACSFLEYETDDKPREET 95 (376)
Q Consensus 23 ~Ka~va~~~l~~~np~v~i~~~--~~~i~~~~---~~~~~~~DlVi~a~Dn~--~~r~~in~~~~~~~~~~~~~~~~~~~ 95 (376)
.......+.+.+. +.+...+ ........ +..+++.|+||..+|.+ .+...+-+.|. +.
T Consensus 10 ~~~~~~~~~~~~~--G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~ak-------------k~ 74 (97)
T PF10087_consen 10 DRERRYKRILEKY--GGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAK-------------KY 74 (97)
T ss_pred ccHHHHHHHHHHc--CCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHH-------------Hc
Confidence 3344455666664 5666666 23333222 45678889999999964 57777888885 78
Q ss_pred CceEEEeccCCcc
Q 017136 96 IKPMVDGGTEGFK 108 (376)
Q Consensus 96 ~~pli~~g~~G~~ 108 (376)
++|++.+-..|..
T Consensus 75 ~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 75 GIPIIYSRSRGVS 87 (97)
T ss_pred CCcEEEECCCCHH
Confidence 9999998766643
No 63
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=69.57 E-value=3.8 Score=31.49 Aligned_cols=60 Identities=23% Similarity=0.227 Sum_probs=31.0
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccccccee
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 338 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g~~~~~ 338 (376)
-.++++++..|+.+|.+.+.++. ++... .-.||... ...+.-...-.++|++| +++| +.|
T Consensus 15 ~~Rie~~~~~t~~~L~~kI~~~l--~~~~~-----~~~L~~~~--~~~~~l~s~~~~tl~~lglkHG--dml 75 (80)
T PF11543_consen 15 MKRIEVSPSSTLSDLKEKISEQL--SIPDS-----SQSLSKDR--NNKEELKSSDSKTLSSLGLKHG--DML 75 (80)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHS-----TT-----T---BSSG--GGGGCSSS-TT-CCCCT---TT---EE
T ss_pred CEEEEcCCcccHHHHHHHHHHHc--CCCCc-----ceEEEecC--CCCcccccCCcCCHHHcCCCCc--cEE
Confidence 34778888899999999998865 33322 33444332 11111112347889999 9999 565
No 64
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=69.49 E-value=18 Score=32.15 Aligned_cols=57 Identities=12% Similarity=0.211 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhCCCceEEEEEccccCcc-hh---cc--ccCcEEEEccCCHHHHHHHHHHHH
Q 017136 24 KAEVAAKRVMERVSGVNIVPHFCRIEDKD-IS---FY--NDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 24 Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~---~~--~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
-++.+++++++.+|+++|..+.+.+.+.. .+ .+ .+.|+|+.++..+....|+.+...
T Consensus 60 v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE~~~~~~~~ 122 (177)
T TIGR00696 60 VLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEIWMRNHRH 122 (177)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhHHHHHHhHH
Confidence 45788999999999999988866665432 22 22 478999999999999999987653
No 65
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=67.46 E-value=21 Score=29.47 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=26.0
Q ss_pred hhccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccCCc
Q 017136 53 ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 107 (376)
Q Consensus 53 ~~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~ 107 (376)
.+.+..+|+|||.+ +.++-...-+.|. ++++|+|-| |.|+
T Consensus 62 ~~~~~~~DVvIDfT-~p~~~~~~~~~~~-------------~~g~~~ViG-TTG~ 101 (124)
T PF01113_consen 62 EELLEEADVVIDFT-NPDAVYDNLEYAL-------------KHGVPLVIG-TTGF 101 (124)
T ss_dssp HHHTTH-SEEEEES--HHHHHHHHHHHH-------------HHT-EEEEE--SSS
T ss_pred HHhcccCCEEEEcC-ChHHhHHHHHHHH-------------hCCCCEEEE-CCCC
Confidence 56778899999999 6666666666665 568998864 4454
No 66
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=63.25 E-value=50 Score=26.20 Aligned_cols=64 Identities=17% Similarity=0.034 Sum_probs=41.9
Q ss_pred HHHHHHHhhCC-CceEEEEEcccc--C--------cchhccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCC
Q 017136 27 VAAKRVMERVS-GVNIVPHFCRIE--D--------KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET 95 (376)
Q Consensus 27 va~~~l~~~np-~v~i~~~~~~i~--~--------~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~ 95 (376)
+|.++++.+-. +.+|+.+...+. + .-.+.+.++++|+.|+++.+.-..+-+.|. +.
T Consensus 18 va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~~i~~~a~-------------~~ 84 (103)
T PF13241_consen 18 VAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPELNEAIYADAR-------------AR 84 (103)
T ss_dssp HHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HHHHHHHHHHHH-------------HT
T ss_pred HHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHHHHHHHHHHHh-------------hC
Confidence 44555555433 578888777741 1 113567889999999999998888999996 56
Q ss_pred CceEEEec
Q 017136 96 IKPMVDGG 103 (376)
Q Consensus 96 ~~pli~~g 103 (376)
++|+-.+.
T Consensus 85 ~i~vn~~D 92 (103)
T PF13241_consen 85 GILVNVVD 92 (103)
T ss_dssp TSEEEETT
T ss_pred CEEEEECC
Confidence 77765543
No 67
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=60.11 E-value=31 Score=30.31 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=41.6
Q ss_pred HHHHHHHHhhCCCceEEE-EEccccCcc-h---hcc--ccCcEEEEccCCHHHHHHHHHHHH
Q 017136 26 EVAAKRVMERVSGVNIVP-HFCRIEDKD-I---SFY--NDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 26 ~va~~~l~~~np~v~i~~-~~~~i~~~~-~---~~~--~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
+.+++++++.+|+++|.. ++....... . +.+ .+.|+|+.++.......|+.+...
T Consensus 60 ~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~ 121 (171)
T cd06533 60 EKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGAPKQELWIARHKD 121 (171)
T ss_pred HHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH
Confidence 556678999999999998 455554322 2 222 368999999999999999988774
No 68
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=59.61 E-value=12 Score=30.59 Aligned_cols=37 Identities=11% Similarity=0.137 Sum_probs=29.8
Q ss_pred hccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEecc
Q 017136 54 SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 104 (376)
Q Consensus 54 ~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~ 104 (376)
+.+.+.|+||.|+++-.++.+...+. +.++.+||.+.
T Consensus 62 ~~~~~~Dvvf~a~~~~~~~~~~~~~~--------------~~g~~ViD~s~ 98 (121)
T PF01118_consen 62 EELSDVDVVFLALPHGASKELAPKLL--------------KAGIKVIDLSG 98 (121)
T ss_dssp HHHTTESEEEE-SCHHHHHHHHHHHH--------------HTTSEEEESSS
T ss_pred hHhhcCCEEEecCchhHHHHHHHHHh--------------hCCcEEEeCCH
Confidence 34589999999999999999988886 57888998753
No 69
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=56.40 E-value=20 Score=36.00 Aligned_cols=53 Identities=13% Similarity=0.175 Sum_probs=40.8
Q ss_pred eEEEEEccccCcc--hhccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccCC
Q 017136 40 NIVPHFCRIEDKD--ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 106 (376)
Q Consensus 40 ~i~~~~~~i~~~~--~~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G 106 (376)
++++...++.+.+ .++++++|+||+|......+..+ ++|. +.+++++|.....
T Consensus 48 ~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~~~i~-ka~i-------------~~gv~yvDts~~~ 102 (389)
T COG1748 48 KVEALQVDAADVDALVALIKDFDLVINAAPPFVDLTIL-KACI-------------KTGVDYVDTSYYE 102 (389)
T ss_pred cceeEEecccChHHHHHHHhcCCEEEEeCCchhhHHHH-HHHH-------------HhCCCEEEcccCC
Confidence 7888877777653 68899999999999988777444 4554 6889999986543
No 70
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=55.68 E-value=42 Score=29.45 Aligned_cols=60 Identities=20% Similarity=0.318 Sum_probs=44.5
Q ss_pred CCcHH-HHHHHHHHhhCCCceEEEEE-ccccCcc-hhcc-----ccCcEEEEccCCHHHHHHHHHHHH
Q 017136 21 GKPKA-EVAAKRVMERVSGVNIVPHF-CRIEDKD-ISFY-----NDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 21 G~~Ka-~va~~~l~~~np~v~i~~~~-~~i~~~~-~~~~-----~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
|++.+ +.+++++++.+|+++|..+. ..+++.. .+.+ .+.|+|+.++.......|+.+...
T Consensus 56 ~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~ 123 (172)
T PF03808_consen 56 GSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQERWIARHRQ 123 (172)
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHH
Confidence 34443 67889999999999999654 4454322 2222 478999999999999999988875
No 71
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=55.18 E-value=95 Score=28.73 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=30.5
Q ss_pred hhccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEecc
Q 017136 53 ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 104 (376)
Q Consensus 53 ~~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~ 104 (376)
++.+.++++||.|+|+.+.-..+-..|. ..++++..+.-
T Consensus 80 ~~dl~g~~LViaATdD~~vN~~I~~~a~-------------~~~~lvn~vd~ 118 (223)
T PRK05562 80 KEFIKDKHLIVIATDDEKLNNKIRKHCD-------------RLYKLYIDCSD 118 (223)
T ss_pred hHHhCCCcEEEECCCCHHHHHHHHHHHH-------------HcCCeEEEcCC
Confidence 4557889999999999998888888995 45676665543
No 72
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=53.29 E-value=18 Score=35.99 Aligned_cols=52 Identities=10% Similarity=0.107 Sum_probs=36.8
Q ss_pred CCceEEEEEccccCcc--hhccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEe
Q 017136 37 SGVNIVPHFCRIEDKD--ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDG 102 (376)
Q Consensus 37 p~v~i~~~~~~i~~~~--~~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~ 102 (376)
...++.....++.+.. .++++++|+||+|+... .-..+-++|. +.++++||.
T Consensus 44 ~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~i-------------~~g~~yvD~ 97 (386)
T PF03435_consen 44 LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVARACI-------------EAGVHYVDT 97 (386)
T ss_dssp TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHHHHH-------------HHT-EEEES
T ss_pred cccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHHHHH-------------HhCCCeecc
Confidence 4567788777777654 57899999999999877 4456677786 678999994
No 73
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=50.95 E-value=49 Score=25.51 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=35.6
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccccccee
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 338 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g~~~~~ 338 (376)
...+.+.++.|++.+.+.++++. ++... ..+.+|... .+ ..+.++.++ +++| +.|
T Consensus 23 ~~~~~v~~~~~l~~l~~~y~~~~--gi~~~----~~rf~f~G~--~L------~~~~T~~~l~m~d~--d~I 78 (87)
T cd01763 23 EVFFKIKRSTPLKKLMEAYCQRQ--GLSMN----SVRFLFDGQ--RI------RDNQTPDDLGMEDG--DEI 78 (87)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHh--CCCcc----ceEEEECCe--EC------CCCCCHHHcCCCCC--CEE
Confidence 44677888899999999999886 33322 122344321 11 235788899 8888 566
No 74
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=48.35 E-value=50 Score=24.04 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=34.1
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccc-eeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccccccee
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQL-AKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 338 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l-~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g~~~~~ 338 (376)
...+.+.++.+++.+++.++++..+.. +...+.+++.. + +.++++.++ +++| +.|
T Consensus 12 ~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~--------L------~~~~T~~~~~ied~--d~I 68 (72)
T PF11976_consen 12 EIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKR--------L------DPNDTPEDLGIEDG--DTI 68 (72)
T ss_dssp EEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEE--------E-------TTSCHHHHT-STT--EEE
T ss_pred EEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEE--------c------CCCCCHHHCCCCCC--CEE
Confidence 345667788999999999998763333 22222222222 1 346788999 9999 566
No 75
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=48.22 E-value=59 Score=31.64 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=47.5
Q ss_pred hhCCCceEEEEEcc--ccCcc-hhccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEec-cCCcce
Q 017136 34 ERVSGVNIVPHFCR--IEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG-TEGFKG 109 (376)
Q Consensus 34 ~~np~v~i~~~~~~--i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g-~~G~~G 109 (376)
...|++++.....+ +...+ .++++++|+||.|+.+-.++.++..+. ..++.+||-+ .+-+.-
T Consensus 22 ~~HP~~el~~l~s~~~~~~~~~~~~~~~~D~vFlalp~~~s~~~~~~~~--------------~~g~~VIDlSadfRl~~ 87 (310)
T TIGR01851 22 SGRDDIELLSIAPDRRKDAAERAKLLNAADVAILCLPDDAAREAVSLVD--------------NPNTCIIDASTAYRTAD 87 (310)
T ss_pred hCCCCeEEEEEecccccCcCCHhHhhcCCCEEEECCCHHHHHHHHHHHH--------------hCCCEEEECChHHhCCC
Confidence 34699999888755 33223 456688999999999999999987765 4678888864 233333
Q ss_pred eEEEEeCC
Q 017136 110 HARVIIPG 117 (376)
Q Consensus 110 ~v~~~~p~ 117 (376)
.+-..+|.
T Consensus 88 ~~~yglPE 95 (310)
T TIGR01851 88 DWAYGFPE 95 (310)
T ss_pred CCeEEccc
Confidence 33334454
No 76
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=39.97 E-value=1.7e+02 Score=27.31 Aligned_cols=41 Identities=29% Similarity=0.254 Sum_probs=28.5
Q ss_pred hhccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccCCcc
Q 017136 53 ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFK 108 (376)
Q Consensus 53 ~~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~ 108 (376)
.++++.+|+|++++ +...-..+-..|. +.++|++.+ +.|+.
T Consensus 55 ~~ll~~~DvVid~t-~p~~~~~~~~~al-------------~~G~~vvig-ttG~s 95 (257)
T PRK00048 55 EAVLADADVLIDFT-TPEATLENLEFAL-------------EHGKPLVIG-TTGFT 95 (257)
T ss_pred HHhccCCCEEEECC-CHHHHHHHHHHHH-------------HcCCCEEEE-CCCCC
Confidence 34567899999998 4444455556665 689999955 66654
No 77
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=39.88 E-value=61 Score=26.45 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=28.7
Q ss_pred EeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecC
Q 017136 272 ELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQA 310 (376)
Q Consensus 272 ~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~ 310 (376)
-+..++|..|+|+.|.+|+ .++..+.+.+.--||...
T Consensus 41 rVsS~~tt~eVI~~LLeKF--k~d~~~~s~p~FALYevh 77 (112)
T cd01782 41 RVSSTATTRDVIDTLSEKF--RPDMRMLSNPTYSLYEVH 77 (112)
T ss_pred EEecCCCHHHHHHHHHHHh--cccccccCCcceEEEEEe
Confidence 4566799999999999987 556556666777888764
No 78
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=39.45 E-value=75 Score=22.88 Aligned_cols=53 Identities=8% Similarity=0.108 Sum_probs=32.3
Q ss_pred EEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccccccee
Q 017136 270 LIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 338 (376)
Q Consensus 270 ~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g~~~~~ 338 (376)
.+.++++.|+.+|.+.+..+..+..+...+.++. ..++ -+++|+++ +++| ..|
T Consensus 13 ~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g--------~~l~------d~~~L~~~~i~~g--~~l 66 (71)
T cd01812 13 DLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKG--------KERD------DAETLDMSGVKDG--SKV 66 (71)
T ss_pred EEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCC--------cccC------ccCcHHHcCCCCC--CEE
Confidence 4567778899999999987753322233333221 1222 14678888 8888 454
No 79
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=38.95 E-value=58 Score=24.28 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=35.0
Q ss_pred CcccCCcEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccc
Q 017136 262 CLVCGPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 333 (376)
Q Consensus 262 C~vC~~~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g 333 (376)
|-..|....+++++..|+.+|-+.+.....+..+...+.++.. .++ -+++|++. +++|
T Consensus 3 ~~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~--------~L~------d~~tL~~~~i~~g 61 (76)
T cd01800 3 WKLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGI--------FIK------DSNSLAYYNLANG 61 (76)
T ss_pred cccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCE--------EcC------CCCcHHHcCCCCC
Confidence 4444555567888889999999999876533333333333321 121 13578888 7777
No 80
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=35.42 E-value=62 Score=23.83 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=21.4
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCc
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGK 304 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~ 304 (376)
..++.+.+..++.++++..|+++++.-+.-.+..+++
T Consensus 8 r~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k 44 (65)
T PF11470_consen 8 RFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNK 44 (65)
T ss_dssp EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTE
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCE
Confidence 4456677889999999999998733223334444443
No 81
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=34.47 E-value=1.2e+02 Score=27.66 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=36.2
Q ss_pred HHHHHHhh-CCCceEEEEEcccc-----------------CcchhccccCcEEEEccCCHHHHHHHHHHHH
Q 017136 28 AAKRVMER-VSGVNIVPHFCRIE-----------------DKDISFYNDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 28 a~~~l~~~-np~v~i~~~~~~i~-----------------~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
|..+++.+ +-+.+|+.+...+. .+..+.+..+++||.|+|+.+--..+-+.|.
T Consensus 24 a~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~ 94 (210)
T COG1648 24 ALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELNERIAKAAR 94 (210)
T ss_pred HHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHHHHHHHHHHH
Confidence 33344333 34677777776662 1234455669999999999998888888896
No 82
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=32.96 E-value=69 Score=23.56 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=23.6
Q ss_pred EEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCC
Q 017136 269 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRG 303 (376)
Q Consensus 269 ~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~ 303 (376)
..+.+++++|++++-..+..+..+..+...+.+++
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~G 46 (71)
T cd01796 12 FSLDVDPDLELENFKALCEAESGIPASQQQLIYNG 46 (71)
T ss_pred EEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECC
Confidence 45677888999999999988764433343444433
No 83
>smart00455 RBD Raf-like Ras-binding domain.
Probab=32.91 E-value=64 Score=23.98 Aligned_cols=33 Identities=9% Similarity=0.071 Sum_probs=24.4
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEE
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVT 300 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~ 300 (376)
...+.+.+.+|+.|.++.+++|+.+..+.-.+.
T Consensus 11 ~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~ 43 (70)
T smart00455 11 RTVVKVRPGKTVRDALAKALKKRGLNPECCVVR 43 (70)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEE
Confidence 446778889999999999999985544433333
No 84
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=31.44 E-value=1.5e+02 Score=28.08 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhCCCceEEEEE-ccccCcch-hcc-----ccCcEEEEccCCHHHHHHHHHHHH
Q 017136 25 AEVAAKRVMERVSGVNIVPHF-CRIEDKDI-SFY-----NDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 25 a~va~~~l~~~np~v~i~~~~-~~i~~~~~-~~~-----~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
++.|++.+++..|+++|..++ +.++.... ..+ .+.|+++.++.......|+.+--.
T Consensus 121 ~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~VgmG~P~QE~wi~~~~~ 183 (253)
T COG1922 121 AEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILLVGMGVPRQEIWIARNRQ 183 (253)
T ss_pred HHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHhHH
Confidence 467888899999999998877 55554332 232 478999999999999999887553
No 85
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=30.19 E-value=1.6e+02 Score=28.74 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=41.3
Q ss_pred HhhCCCceEEEEEccccC---cchhccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEec
Q 017136 33 MERVSGVNIVPHFCRIED---KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 103 (376)
Q Consensus 33 ~~~np~v~i~~~~~~i~~---~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g 103 (376)
....|++++.....+-.. ...+.+.++|+||.|+.+-.++.|+.++. +.++.+||-+
T Consensus 22 L~~hp~~~l~~~~s~~~~~~~~~~~~~~~~DvvFlalp~~~s~~~~~~~~--------------~~g~~VIDlS 81 (313)
T PRK11863 22 LAGRSDIELLSIPEAKRKDAAARRELLNAADVAILCLPDDAAREAVALID--------------NPATRVIDAS 81 (313)
T ss_pred HhcCCCeEEEEEecCCCCcccCchhhhcCCCEEEECCCHHHHHHHHHHHH--------------hCCCEEEECC
Confidence 344578888877655321 12345578999999999999999998876 4577888865
No 86
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=28.90 E-value=91 Score=22.62 Aligned_cols=54 Identities=13% Similarity=0.313 Sum_probs=33.2
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccc
Q 017136 266 GPGVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 333 (376)
Q Consensus 266 ~~~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g 333 (376)
|....+.++++.|++++-+.+.++..+..+...+.++++. ++ -+.+|++. +++|
T Consensus 8 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~--------L~------d~~~l~~~~i~~~ 62 (70)
T cd01798 8 GHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKE--------LR------NTTTIQECDLGQQ 62 (70)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeE--------CC------CCCcHHHcCCCCC
Confidence 3345677888899999999998876333333333333222 22 13677777 7777
No 87
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=27.73 E-value=2.9e+02 Score=24.88 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=30.9
Q ss_pred hhccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccCC
Q 017136 53 ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 106 (376)
Q Consensus 53 ~~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G 106 (376)
.+.+.++++||.|+|+.+.-..+-..|. ..++|+-.++--.
T Consensus 64 ~~dl~~~~lVi~at~d~~ln~~i~~~a~-------------~~~ilvn~~d~~e 104 (205)
T TIGR01470 64 ADILEGAFLVIAATDDEELNRRVAHAAR-------------ARGVPVNVVDDPE 104 (205)
T ss_pred HHHhCCcEEEEECCCCHHHHHHHHHHHH-------------HcCCEEEECCCcc
Confidence 3457899999999999887778888885 5678776555433
No 88
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=27.22 E-value=1.1e+02 Score=22.52 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=19.6
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHcCc
Q 017136 266 GPGVLIELDTSVTLEKFINLLEEHP 290 (376)
Q Consensus 266 ~~~~~~~~~~~~tl~~li~~l~~k~ 290 (376)
|....++++++.|+.++-+.+..+.
T Consensus 8 G~~~~l~v~~~~TV~~lK~~I~~~~ 32 (70)
T cd01794 8 GKDVKLSVSSKDTVGQLKKQLQAAE 32 (70)
T ss_pred CCEEEEEECCcChHHHHHHHHHHHh
Confidence 4445677888899999999888765
No 89
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=27.17 E-value=1e+02 Score=23.92 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEcc
Q 017136 24 KAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGL 66 (376)
Q Consensus 24 Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~ 66 (376)
-.+.|.+++.+....-+|+.+..++ ....++..+||+|+...
T Consensus 37 ~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 37 MLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG 78 (112)
T ss_dssp HHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred HHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence 3456666665666678888998888 44456677899999876
No 90
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=26.83 E-value=1.1e+02 Score=22.56 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=32.6
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccc
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 333 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g 333 (376)
...+.++++.|+.++-+.++++..+..+...+.++++. |+ -+.+|++. ++++
T Consensus 12 ~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~--------L~------d~~~L~~~~i~~~ 64 (74)
T cd01807 12 ECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKA--------LA------DDKRLSDYSIGPN 64 (74)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEE--------CC------CCCCHHHCCCCCC
Confidence 34567888899999999998876333333333333222 22 13678888 7777
No 91
>PRK10637 cysG siroheme synthase; Provisional
Probab=26.48 E-value=3.1e+02 Score=28.07 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=23.6
Q ss_pred hhccccCcEEEEccCCHHHHHHHHHHHH
Q 017136 53 ISFYNDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 53 ~~~~~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
.+.+.++++||.|+|+.+.-..|-+.|.
T Consensus 67 ~~dl~~~~lv~~at~d~~~n~~i~~~a~ 94 (457)
T PRK10637 67 ESLLDTCWLAIAATDDDAVNQRVSEAAE 94 (457)
T ss_pred hHHhCCCEEEEECCCCHHHhHHHHHHHH
Confidence 3457789999999999988888888885
No 92
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=25.82 E-value=2.3e+02 Score=26.65 Aligned_cols=60 Identities=20% Similarity=0.238 Sum_probs=35.9
Q ss_pred CCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEE
Q 017136 21 GKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMV 100 (376)
Q Consensus 21 G~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli 100 (376)
+.+|++.+++.+++....+. .+++|+||.--..-.--+.+.... ..++|++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~---------------~~~~Dlvi~iGGDGTlL~a~~~~~--------------~~~~Pvl 53 (246)
T PRK04761 3 PTPEAQAALEELVKRYGDVP---------------IEEADVIVALGGDGFMLQTLHRYM--------------NSGKPVY 53 (246)
T ss_pred CCHHHHHHHHHHHHHhCCCC---------------cccCCEEEEECCCHHHHHHHHHhc--------------CCCCeEE
Confidence 57899999999988874431 224677775444333333333333 4568875
Q ss_pred --EeccCCcce
Q 017136 101 --DGGTEGFKG 109 (376)
Q Consensus 101 --~~g~~G~~G 109 (376)
+.|..||.-
T Consensus 54 GIN~G~lGFL~ 64 (246)
T PRK04761 54 GMNRGSVGFLM 64 (246)
T ss_pred EEeCCCCCccc
Confidence 666666543
No 93
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=25.62 E-value=2.6e+02 Score=24.10 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=22.1
Q ss_pred hccccCcEEEEccCCHHHHHHHHHHHH
Q 017136 54 SFYNDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 54 ~~~~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
+.+.++|+||.|+|+.+.-..+-..|.
T Consensus 66 ~dl~~a~lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 66 DDIKDAHLIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred hcCCCceEEEECCCCHHHHHHHHHHHH
Confidence 447789999999999987777777774
No 94
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=25.39 E-value=91 Score=23.82 Aligned_cols=69 Identities=12% Similarity=0.050 Sum_probs=37.5
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hcccccceeeecccccc
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTGQ 346 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g~~~~~~~~~~~~~ 346 (376)
+....+...+|+++|-..|.... |+....... .+|........ ..-.+=.++|..+ +++| .+| .|
T Consensus 15 ~~ekr~~~~~Tv~eLK~kl~~~~--Gi~~~~m~L---~l~~~~~~~~~-~~~~dd~~~L~~y~~~dg--~~i------~V 80 (87)
T PF14560_consen 15 SVEKRFPKSITVSELKQKLEKLT--GIPPSDMRL---QLKSDKDDSKI-EELDDDDATLGSYGIKDG--MRI------HV 80 (87)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHH--TS-TTTEEE---EEE-TSSSSEE-EESSGSSSBCCHHT-STT--EEE------EE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh--CCCcccEEE---EEEecCCCccc-cccCCCccEeecCCCCCC--CEE------EE
Confidence 44556777899999999988765 444332221 11211111100 0112346788888 9999 788 77
Q ss_pred ccCC
Q 017136 347 SDKK 350 (376)
Q Consensus 347 ~d~~ 350 (376)
.|..
T Consensus 81 ~D~~ 84 (87)
T PF14560_consen 81 VDTN 84 (87)
T ss_dssp EE-T
T ss_pred EeCC
Confidence 7765
No 95
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=24.86 E-value=1.3e+02 Score=22.56 Aligned_cols=28 Identities=4% Similarity=0.033 Sum_probs=21.5
Q ss_pred cCCcEEEEeCCCCcHHHHHHHHHcCccc
Q 017136 265 CGPGVLIELDTSVTLEKFINLLEEHPKL 292 (376)
Q Consensus 265 C~~~~~~~~~~~~tl~~li~~l~~k~~~ 292 (376)
|+....+++.+++|++++-+.+..+..+
T Consensus 11 ~~~t~~l~v~~~~TV~~lK~kI~~~~gi 38 (75)
T cd01799 11 HTVTIWLTVRPDMTVAQLKDKVFLDYGF 38 (75)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHHCc
Confidence 4444567888899999999999877633
No 96
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=24.65 E-value=85 Score=23.69 Aligned_cols=45 Identities=16% Similarity=0.122 Sum_probs=30.1
Q ss_pred CCCcHHHHHHHHHHhhCCCceEEEEE--ccccCcchhccccCcEEEEccC
Q 017136 20 VGKPKAEVAAKRVMERVSGVNIVPHF--CRIEDKDISFYNDFNIIVLGLD 67 (376)
Q Consensus 20 iG~~Ka~va~~~l~~~np~v~i~~~~--~~i~~~~~~~~~~~DlVi~a~D 67 (376)
-|..=+..+++++++..|...+.... .++.+. -..++|+|+.+.+
T Consensus 8 ~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~~~---~~~~~DlIisT~~ 54 (86)
T cd05563 8 SGLGSSLMLKMNVEKVLKELGIEAEVEHTDLGSA---KASSADIIVTSKD 54 (86)
T ss_pred CCccHHHHHHHHHHHHHHHCCCcEEEEEeccccc---CCCCCCEEEEchh
Confidence 36667888899998888776654322 222221 1568999999885
No 97
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=24.25 E-value=76 Score=24.16 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=31.4
Q ss_pred CCCcHHHHHHHHHHhhCCCceEEEEE--ccccCcchhccccCcEEEEccC
Q 017136 20 VGKPKAEVAAKRVMERVSGVNIVPHF--CRIEDKDISFYNDFNIIVLGLD 67 (376)
Q Consensus 20 iG~~Ka~va~~~l~~~np~v~i~~~~--~~i~~~~~~~~~~~DlVi~a~D 67 (376)
-|..-+..++.++++..+...+.... ..+.+... ...++|+|+.+.+
T Consensus 9 ~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~~~~~~-~~~~~Dliist~~ 57 (89)
T cd05566 9 TGVATSTVVASKVKELLKENGIDVKVEQCKIAEVPS-LLDDADLIVSTTK 57 (89)
T ss_pred CCccHHHHHHHHHHHHHHHCCCceEEEEecHHHhhc-ccCCCcEEEEcCC
Confidence 46777788888888888776654332 23333333 4678999998865
No 98
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=24.07 E-value=1.1e+02 Score=25.72 Aligned_cols=45 Identities=31% Similarity=0.274 Sum_probs=32.5
Q ss_pred CCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhcc-ccCcEEEEc
Q 017136 19 DVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFY-NDFNIIVLG 65 (376)
Q Consensus 19 diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~-~~~DlVi~a 65 (376)
|+...-.+.|.+.+++.... +++.+..++.+.+.. + .+||+|++.
T Consensus 35 D~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~-~~~~~D~I~~~ 80 (152)
T PF13847_consen 35 DISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQE-LEEKFDIIISN 80 (152)
T ss_dssp ESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGC-SSTTEEEEEEE
T ss_pred ECcHHHHHHhhccccccccc-ccceEEeehhccccc-cCCCeeEEEEc
Confidence 44555566667767766655 899999999885533 4 699999986
No 99
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=23.89 E-value=1.4e+02 Score=21.22 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=36.3
Q ss_pred EEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccc
Q 017136 269 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 333 (376)
Q Consensus 269 ~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g 333 (376)
..+.++++.|+.+|-+.+..+..+..+...+.+++..| . -+++|+++ +++|
T Consensus 8 ~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L--~------------d~~tL~~~~i~~~ 59 (69)
T PF00240_consen 8 FTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKEL--D------------DDKTLSDYGIKDG 59 (69)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEE--S------------TTSBTGGGTTSTT
T ss_pred EEEEECCCCCHHHhhhhcccccccccccceeeeeeecc--c------------CcCcHHHcCCCCC
Confidence 35667788999999999988775555566666665554 1 24677888 8888
No 100
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=23.82 E-value=1.3e+02 Score=20.79 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=18.2
Q ss_pred EEEEeCCCCcHHHHHHHHHcCcc
Q 017136 269 VLIELDTSVTLEKFINLLEEHPK 291 (376)
Q Consensus 269 ~~~~~~~~~tl~~li~~l~~k~~ 291 (376)
..+.++++.|+++|.+.+..+.+
T Consensus 12 ~~~~v~~~~tv~~lk~~i~~~~~ 34 (64)
T smart00213 12 ITLEVKPSDTVSELKEKIAELTG 34 (64)
T ss_pred EEEEECCCCcHHHHHHHHHHHHC
Confidence 35667788899999999987763
No 101
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=23.63 E-value=1.2e+02 Score=22.36 Aligned_cols=33 Identities=6% Similarity=0.083 Sum_probs=22.2
Q ss_pred EEEeCCCCcHHHHHHHHHcCccccceeeEEEeC
Q 017136 270 LIELDTSVTLEKFINLLEEHPKLQLAKASVTYR 302 (376)
Q Consensus 270 ~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~ 302 (376)
.++++++.|+.++-..+..+..+..+...+.++
T Consensus 12 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~ 44 (74)
T cd01793 12 TLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLA 44 (74)
T ss_pred EEEECCcCcHHHHHHHHHhhhCCCHHHEEEEEC
Confidence 567788899999999998776433333333333
No 102
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=22.97 E-value=1.2e+02 Score=22.44 Aligned_cols=28 Identities=7% Similarity=0.153 Sum_probs=20.4
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccce
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLA 295 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~ 295 (376)
...+.+.+.+|++|++..+++++.+..+
T Consensus 12 ~t~V~vrpg~ti~d~L~~~~~kr~L~~~ 39 (71)
T PF02196_consen 12 RTVVQVRPGMTIRDALSKACKKRGLNPE 39 (71)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHTTT--CC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCHH
Confidence 4466788899999999999999844333
No 103
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=22.91 E-value=1.4e+02 Score=21.96 Aligned_cols=52 Identities=13% Similarity=0.319 Sum_probs=32.2
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccc
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 333 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g 333 (376)
...++++++.|+.++-+.+..+..+..+...+.++++. |++ +++|++. ++++
T Consensus 10 ~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~--------L~D------~~tL~~~~i~~~ 62 (74)
T cd01810 10 SSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRP--------MED------EHPLGEYGLKPG 62 (74)
T ss_pred EEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEE--------CCC------CCCHHHcCCCCC
Confidence 34577888899999999998775333333344333322 221 3577777 7777
No 104
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=22.35 E-value=1.3e+02 Score=24.01 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=26.2
Q ss_pred hhccc--cCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEecc
Q 017136 53 ISFYN--DFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 104 (376)
Q Consensus 53 ~~~~~--~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~ 104 (376)
.+++. ..|+||+|..+-.+..++-.+. +.++.+|.+..
T Consensus 52 ~~~~~~~~~dvvVE~t~~~~~~~~~~~~L--------------~~G~~VVt~nk 91 (117)
T PF03447_consen 52 EELIDDPDIDVVVECTSSEAVAEYYEKAL--------------ERGKHVVTANK 91 (117)
T ss_dssp HHHHTHTT-SEEEE-SSCHHHHHHHHHHH--------------HTTCEEEES-H
T ss_pred HHHhcCcCCCEEEECCCchHHHHHHHHHH--------------HCCCeEEEECH
Confidence 45666 8999999988877777777666 57888887653
No 105
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=21.97 E-value=40 Score=23.94 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=14.4
Q ss_pred CCcccCCcEEEEeCCCCcHHHHH
Q 017136 261 DCLVCGPGVLIELDTSVTLEKFI 283 (376)
Q Consensus 261 ~C~vC~~~~~~~~~~~~tl~~li 283 (376)
-||+||.-.++.+.++..|+.|-
T Consensus 6 ~CP~CgnKTR~kir~DT~LkNfP 28 (55)
T PF14205_consen 6 LCPICGNKTRLKIREDTVLKNFP 28 (55)
T ss_pred ECCCCCCccceeeecCceecccc
Confidence 49999973345555555555554
No 106
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=21.89 E-value=1.2e+02 Score=29.75 Aligned_cols=39 Identities=10% Similarity=-0.030 Sum_probs=30.1
Q ss_pred hhccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccC
Q 017136 53 ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE 105 (376)
Q Consensus 53 ~~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~ 105 (376)
.+++.++|+|++|+....++.+..... +.++++|+.|..
T Consensus 73 ~el~~~vDVVIdaT~~~~~~e~a~~~~--------------~aGk~VI~~~~~ 111 (341)
T PRK04207 73 EDLLEKADIVVDATPGGVGAKNKELYE--------------KAGVKAIFQGGE 111 (341)
T ss_pred hHhhccCCEEEECCCchhhHHHHHHHH--------------HCCCEEEEcCCC
Confidence 445678999999998887777776555 567998888754
No 107
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=21.89 E-value=1.8e+02 Score=20.96 Aligned_cols=52 Identities=15% Similarity=0.292 Sum_probs=32.1
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccc
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 333 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g 333 (376)
...+.++++.|++++-+.++.+..+......+.+++.. ++ -+++|++. +++|
T Consensus 12 ~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~--------L~------d~~tl~~~~i~~g 64 (76)
T cd01806 12 EIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ--------MN------DDKTAADYKLEGG 64 (76)
T ss_pred EEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeE--------cc------CCCCHHHcCCCCC
Confidence 44567778899999999998775333333333333222 21 13578888 7777
No 108
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=21.12 E-value=4e+02 Score=25.21 Aligned_cols=65 Identities=23% Similarity=0.262 Sum_probs=46.9
Q ss_pred HHHHHHHHHhhCCCceEEEEEcc-ccCcc--hh----ccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCc
Q 017136 25 AEVAAKRVMERVSGVNIVPHFCR-IEDKD--IS----FYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIK 97 (376)
Q Consensus 25 a~va~~~l~~~np~v~i~~~~~~-i~~~~--~~----~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~ 97 (376)
|+.+++++...+|+++++.+.-. |...+ .+ .-++-.+|+-++=+.+.|.++.+.|. ..++
T Consensus 12 Ae~v~~A~l~QF~~~~~~~~~~p~I~~~~~~~~il~~i~~~~~iV~~Tlv~~~lr~~l~~~~~-------------~~~i 78 (255)
T PF03618_consen 12 AETVARAALAQFPDVEFEIHRFPFIRTEEQLDEILEEIKEENAIVFYTLVDPELREYLEEFCR-------------EHGI 78 (255)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCcCCHHHHHHHHHHHhccCCEEEEeCCCHHHHHHHHHHHH-------------hcCC
Confidence 56667777777788888776544 33321 11 22345699999999999999999996 6789
Q ss_pred eEEEe
Q 017136 98 PMVDG 102 (376)
Q Consensus 98 pli~~ 102 (376)
|.+|.
T Consensus 79 ~~~Dl 83 (255)
T PF03618_consen 79 PCVDL 83 (255)
T ss_pred CEEec
Confidence 99886
No 109
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=21.07 E-value=4.6e+02 Score=23.52 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=22.5
Q ss_pred hccccCcEEEEccCCHHHHHHHHHHHH
Q 017136 54 SFYNDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 54 ~~~~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
..+.++|+||.|+++.+.-..+-..|.
T Consensus 66 ~~l~~adlViaaT~d~elN~~i~~~a~ 92 (202)
T PRK06718 66 SDIVDAFLVIAATNDPRVNEQVKEDLP 92 (202)
T ss_pred hhcCCceEEEEcCCCHHHHHHHHHHHH
Confidence 456789999999999988788877883
No 110
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=20.87 E-value=1.3e+02 Score=19.34 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=17.0
Q ss_pred EEEeCCCCcHHHHHHHHHcCc
Q 017136 270 LIELDTSVTLEKFINLLEEHP 290 (376)
Q Consensus 270 ~~~~~~~~tl~~li~~l~~k~ 290 (376)
.+.+.+..|++++++.+++++
T Consensus 11 ~~~~~~~~tv~~l~~~i~~~~ 31 (69)
T cd00196 11 ELLVPSGTTVADLKEKLAKKL 31 (69)
T ss_pred EEEcCCCCcHHHHHHHHHHHH
Confidence 445556789999999999876
No 111
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=20.56 E-value=3.4e+02 Score=25.34 Aligned_cols=55 Identities=11% Similarity=0.115 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhCCCceEEE-EEccccCcc-h---hcc--ccCcEEEEccCCHHHHHHHHHHHH
Q 017136 25 AEVAAKRVMERVSGVNIVP-HFCRIEDKD-I---SFY--NDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 25 a~va~~~l~~~np~v~i~~-~~~~i~~~~-~---~~~--~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
++.+++++++.. +++|.. +++.+.+.. . +.+ .+.|+|+.++..+....|+.+...
T Consensus 118 ~~~a~~~l~~~y-~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~PkQE~~~~~~~~ 179 (243)
T PRK03692 118 LAQTEAKLRTQW-NVNIVGSQDGYFTPEQRQALFERIHASGAKIVTVAMGSPKQEIFMRDCRL 179 (243)
T ss_pred HHHHHHHHHHHh-CCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHH
Confidence 577888888887 788764 455554322 2 222 479999999999999999987664
No 112
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=20.40 E-value=1.5e+02 Score=22.15 Aligned_cols=26 Identities=4% Similarity=0.156 Sum_probs=21.1
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCcccc
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQ 293 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~ 293 (376)
...+.+.+.+|+.|+++.++++..+.
T Consensus 11 ~t~V~vrpg~ti~d~L~~~c~kr~l~ 36 (72)
T cd01760 11 RTVVPVRPGMSVRDVLAKACKKRGLN 36 (72)
T ss_pred eEEEEECCCCCHHHHHHHHHHHcCCC
Confidence 44667888999999999999987443
No 113
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=20.30 E-value=2.2e+02 Score=21.93 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=29.1
Q ss_pred cCcEEEEccCC-HHHHHHHHHHHHhccccccCCCcccCCCceEEEeccCC
Q 017136 58 DFNIIVLGLDS-IEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG 106 (376)
Q Consensus 58 ~~DlVi~a~Dn-~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G 106 (376)
+.-+||.|.|- ..++..+.++|. .+++|++..++.-
T Consensus 24 kakLViiA~Da~~~~~k~i~~~c~-------------~~~Vpv~~~~t~~ 60 (82)
T PRK13601 24 NVLQVYIAKDAEEHVTKKIKELCE-------------EKSIKIVYIDTMK 60 (82)
T ss_pred CeeEEEEeCCCCHHHHHHHHHHHH-------------hCCCCEEEeCCHH
Confidence 56788888885 568999999995 6899999887653
No 114
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=20.00 E-value=1.8e+02 Score=21.28 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=18.4
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCc
Q 017136 268 GVLIELDTSVTLEKFINLLEEHP 290 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~ 290 (376)
...+.++++.|+.+|-+.+.++.
T Consensus 12 ~~~l~v~~~~TV~~lK~~i~~~~ 34 (77)
T cd01805 12 TFPIEVDPDDTVAELKEKIEEEK 34 (77)
T ss_pred EEEEEECCCCcHHHHHHHHHHhh
Confidence 34567778899999999998875
Done!