Query 017136
Match_columns 376
No_of_seqs 289 out of 2125
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 09:31:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tt5_B Ubiquitin-activating en 100.0 3.9E-72 1.3E-76 561.2 23.4 353 1-362 72-433 (434)
2 1y8q_B Anthracycline-, ubiquit 100.0 2E-67 7E-72 544.5 28.7 336 1-364 49-537 (640)
3 2nvu_B Maltose binding protein 100.0 1.5E-66 5E-71 560.2 29.7 353 1-362 443-804 (805)
4 3cmm_A Ubiquitin-activating en 100.0 2.1E-61 7E-66 523.8 25.5 312 1-334 462-981 (1015)
5 1y8q_A Ubiquitin-like 1 activa 100.0 7.3E-36 2.5E-40 291.6 18.7 234 1-250 68-338 (346)
6 3h8v_A Ubiquitin-like modifier 100.0 1E-34 3.5E-39 276.1 13.4 188 1-267 68-273 (292)
7 1zud_1 Adenylyltransferase THI 100.0 1.1E-32 3.6E-37 258.0 14.7 184 1-267 60-245 (251)
8 1jw9_B Molybdopterin biosynthe 100.0 2.4E-31 8.2E-36 248.5 14.8 184 1-267 63-249 (249)
9 3h5n_A MCCB protein; ubiquitin 100.0 3.8E-31 1.3E-35 258.9 15.3 197 1-267 150-351 (353)
10 3rui_A Ubiquitin-like modifier 100.0 8.8E-31 3E-35 253.0 14.4 187 1-267 66-284 (340)
11 4gsl_A Ubiquitin-like modifier 100.0 5.5E-29 1.9E-33 255.1 13.8 187 1-267 358-576 (615)
12 1tt5_A APPBP1, amyloid protein 100.0 1.8E-28 6.2E-33 251.1 14.9 133 1-151 64-199 (531)
13 3vh1_A Ubiquitin-like modifier 99.9 9.3E-28 3.2E-32 245.9 14.0 188 1-267 359-577 (598)
14 3cmm_A Ubiquitin-activating en 99.9 1.5E-26 5E-31 251.3 14.1 229 1-250 59-389 (1015)
15 1y8x_B Ubiquitin-activating en 99.7 2.1E-17 7.1E-22 130.9 5.4 91 264-362 1-97 (98)
16 1z7l_A Ubiquitin-activating en 99.6 2.6E-16 8.8E-21 147.8 4.0 44 165-208 231-276 (276)
17 3onh_A Ubiquitin-activating en 97.3 0.00038 1.3E-08 56.7 6.2 61 276-352 19-82 (127)
18 1z7l_A Ubiquitin-activating en 89.3 0.3 1E-05 45.3 4.3 31 164-194 135-165 (276)
19 2pjh_A Protein NPL4, nuclear p 52.7 4.1 0.00014 30.1 0.8 58 270-338 17-75 (80)
20 3a4r_A Nfatc2-interacting prot 43.4 54 0.0018 23.6 5.8 55 269-339 21-76 (79)
21 2bwf_A Ubiquitin-like protein 41.9 31 0.0011 24.1 4.2 55 268-338 15-70 (77)
22 3ijp_A DHPR, dihydrodipicolina 36.7 34 0.0012 31.5 4.6 40 53-107 83-122 (288)
23 2kzr_A Ubiquitin thioesterase 33.5 23 0.00078 26.0 2.4 62 271-350 14-78 (86)
24 1uh6_A Ubiquitin-like 5; beta- 33.1 61 0.0021 24.8 4.8 55 268-338 40-95 (100)
25 1v5o_A 1700011N24RIK protein; 31.6 93 0.0032 23.3 5.7 56 268-338 23-79 (102)
26 1hym_A CMTI-V, hydrolyzed cucu 30.0 63 0.0022 21.0 3.7 26 20-46 14-39 (45)
27 2al3_A TUG long isoform; TUG U 29.9 50 0.0017 25.0 3.7 37 268-304 21-57 (90)
28 2klc_A Ubiquilin-1; ubiquitin- 29.9 72 0.0025 24.0 4.8 54 269-338 37-91 (101)
29 3tz6_A Aspartate-semialdehyde 28.8 1E+02 0.0034 29.1 6.5 37 54-104 59-95 (344)
30 2r00_A Aspartate-semialdehyde 28.6 1E+02 0.0035 28.7 6.6 37 54-104 61-97 (336)
31 3dfz_A SIRC, precorrin-2 dehyd 28.4 1.6E+02 0.0054 25.8 7.4 27 53-79 86-112 (223)
32 2jxx_A Nfatc2-interacting prot 27.6 1.2E+02 0.0043 22.9 5.7 54 269-338 39-93 (97)
33 4f3y_A DHPR, dihydrodipicolina 26.5 37 0.0013 30.9 2.9 40 53-107 68-107 (272)
34 2kjr_A CG11242; UBL, ubiquitin 25.3 1.4E+02 0.0048 22.3 5.6 58 268-338 29-90 (95)
35 1wjn_A Tubulin-folding protein 25.1 2.1E+02 0.007 21.1 6.9 68 268-350 24-93 (97)
36 3abi_A Putative uncharacterize 23.2 91 0.0031 29.1 5.1 37 53-103 72-108 (365)
37 2kj6_A Tubulin folding cofacto 22.6 1.8E+02 0.0062 21.8 5.8 58 268-338 28-90 (97)
38 1tvm_A PTS system, galactitol- 22.5 88 0.003 24.2 4.1 47 20-67 30-78 (113)
39 3n3k_B Ubiquitin; hydrolase, p 22.0 78 0.0027 22.4 3.5 51 269-333 16-67 (85)
40 3jyo_A Quinate/shikimate dehyd 21.7 61 0.0021 29.5 3.4 41 23-66 162-202 (283)
41 1ndd_A NEDD8, protein (ubiquit 21.3 80 0.0027 21.6 3.4 51 269-333 13-64 (76)
42 3goe_A DNA repair protein RAD6 21.3 76 0.0026 23.4 3.1 22 269-290 22-43 (82)
43 3mtn_B UBA80, ubcep1, ubiquiti 21.2 92 0.0031 21.9 3.7 52 268-333 15-67 (85)
44 3a9j_A Ubiquitin; protein comp 20.8 83 0.0029 21.5 3.4 51 269-333 13-64 (76)
45 1wxv_A BAG-family molecular ch 20.7 2.2E+02 0.0074 20.5 5.9 54 270-338 20-79 (92)
46 1p9l_A Dihydrodipicolinate red 20.2 2.1E+02 0.0072 25.3 6.7 58 35-108 22-80 (245)
No 1
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Probab=100.00 E-value=3.9e-72 Score=561.21 Aligned_cols=353 Identities=46% Similarity=0.808 Sum_probs=313.9
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
+|+||.|||||||||+++|||++||++|+++++++||+++|+++..++.+.+.++++++|+||+|+||+++|+++|++|+
T Consensus 72 ~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~R~~in~~c~ 151 (434)
T 1tt5_B 72 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI 151 (434)
T ss_dssp CCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEESCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHH
T ss_pred CCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEecccchhhHHHhcCCCEEEECCCCHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999988778899999999999999999999999998
Q ss_pred hccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhhhh
Q 017136 81 SFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWD 160 (376)
Q Consensus 81 ~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~~~ 160 (376)
.+.++.+ |++....++|||++|+.|+.|+++++.|+.++||+|.++..|++..+|.|+++++|+.|+|||+||+.+.|+
T Consensus 152 ~~~~~~~-g~~~~~~~iPli~~~~~g~~G~v~v~~p~~t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i~~~ 230 (434)
T 1tt5_B 152 SLLNYED-GVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWP 230 (434)
T ss_dssp HTCCBSS-SCBCGGGCCCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHH
T ss_pred Hhhhccc-cccccccCCcEEEeccccceeEEEEECCCCCCCcccccCCCCCcCCCcccccccCCcchhHHHHHHHHHHHh
Confidence 6544432 444445689999999999999999999999999999988778889999999999999999999999999999
Q ss_pred hccCC---CCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCcc
Q 017136 161 EVHSG---KSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL 237 (376)
Q Consensus 161 ~~~~~---~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l 237 (376)
..++. ..||+|+++|++|+++.+++||..|||.+.++..+++++++|+|+|+||+|||||++++|++|+|+|.+.++
T Consensus 231 ~~~~~~~~~~~d~d~~~~~~~v~~~a~~~~~~~gi~~~~~~~~~gv~~~iipaia~t~aiig~l~a~EaiK~l~g~~~~l 310 (434)
T 1tt5_B 231 KEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPL 310 (434)
T ss_dssp HSCTTCTTCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTCSCCC
T ss_pred hhcccccccccCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHhHhhccCcccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence 87743 489999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred cccccccccccceeeeeecccCCCCcccCC-cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEe----CCcEEEecCCc
Q 017136 238 SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTY----RGKNLYMQAPP 312 (376)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~C~vC~~-~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~----~~~~lY~~~~~ 312 (376)
++++.|++..+.+...+.++++|+|++|+. |..+.++++.||++|++.|+++++++++.++|++ ++++||+++++
T Consensus 311 ~~~l~~d~~~~~~~~~~~~~~~~~C~vC~~~~~~~~~~~~~tl~~~~~~l~~~~~~~~~~~~is~~~~~~~~~ly~~~~~ 390 (434)
T 1tt5_B 311 NNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVT 390 (434)
T ss_dssp CSEEEEECSBSCEEEEECCCCCTTCTTTCSSCBCCCC-----CTTHHHHHHHCSSCCCSSCCCEET----TEECCCCCCT
T ss_pred CceEEEEcCCCceeEEEeccCCCCCCccCCCCceEEECCCccHHHHHHHHhccCccceEccEEEEEccCCCcEEEecCCc
Confidence 999999999888777788889999999998 8888888888999999999999888999999988 58999999988
Q ss_pred chhHhhhccCCCchHHh-hcccccceeeeccccccccCCcceeEEEEEEEe
Q 017136 313 VLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFR 362 (376)
Q Consensus 313 ~~~~~~~~~l~~~l~~l-v~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 362 (376)
++++++++||+|+|+|| +.+| ++| .|+|++.+.+++++|+|+
T Consensus 391 ~~~~~~~~~l~~~l~~l~~~~g--~~~------~v~d~~~~~~~~~~~~~~ 433 (434)
T 1tt5_B 391 SIEERTRPNLSKTLKELGLVDG--QEL------AVADVTTPQTVLFKLHFT 433 (434)
T ss_dssp TTTTTSCC-CCC-----CCCSS--CCE------ECCCTTCSSCCEEC----
T ss_pred chhhhhHhhhcCCHHHcCCCCC--CEE------EEECCCCcccEEEEEEec
Confidence 89989999999999999 9999 899 999999999999999986
No 2
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=100.00 E-value=2e-67 Score=544.52 Aligned_cols=336 Identities=30% Similarity=0.469 Sum_probs=290.2
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCc--chhccccCcEEEEccCCHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK--DISFYNDFNIIVLGLDSIEARSYINAV 78 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~--~~~~~~~~DlVi~a~Dn~~~r~~in~~ 78 (376)
+|+|+.|||||||||+.+|||++||++|+++|+++||+++|+++..++.+. ..+|++++|+||+|+||+++|+++|++
T Consensus 49 ~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~~i~~~~~~~~~~~~~DlVvda~Dn~~aR~~ln~~ 128 (640)
T 1y8q_B 49 LDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM 128 (640)
T ss_dssp CCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEESCTTSTTSCHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred CCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEecccchhhhhHhhhcCCCEEEECCCCHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999754 368999999999999999999999999
Q ss_pred HHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhh-
Q 017136 79 ACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI- 157 (376)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~- 157 (376)
|+ ..++|||++|+.|+.|+++++.|+.++||+|.. .|+++++|.||++++|+.|+|||+||+.+
T Consensus 129 c~-------------~~~iPlI~~g~~G~~G~v~vi~p~~t~Cy~C~~--~p~~~~~p~Cti~~~p~~~~hci~~a~~~f 193 (640)
T 1y8q_B 129 CL-------------AADVPLIESGTAGYLGQVTTIKKGVTECYECHP--KPTQRTFPGATIRNTPSEPIHCIVWAKYLF 193 (640)
T ss_dssp HH-------------HHTCCEEEEEEETTEEEEEEECTTTSCCTTSSC--CCCCCCCCTTTTTSCCCSHHHHHHHHHHHH
T ss_pred HH-------------HcCCCEEEEEEecccceEEEECCCCCCCcccCC--CCCCcccceeeecCCCCchHHHHHHHHHHH
Confidence 97 578999999999999999999999999999975 57788999999999999999999999964
Q ss_pred ------------------------------------------------h------------------------------h
Q 017136 158 ------------------------------------------------K------------------------------W 159 (376)
Q Consensus 158 ------------------------------------------------~------------------------------~ 159 (376)
. |
T Consensus 194 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~f~k~F~~~I~~Ll~~~~fW 273 (640)
T 1y8q_B 194 NQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNEDGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLW 273 (640)
T ss_dssp HHHHSCCCGGGCCSCCTTCTTSCCC---------------------CHHHHHHTTSCHHHHHHHHHTHHHHHHTTCGGGC
T ss_pred HHHhCCcchhhhhcccccchhhhhhhhhhhhhhhhhhhhhHHHHHhhhhHHHhHhHHHHHHHHHHHhhHHHHHHhCcccc
Confidence 1 1
Q ss_pred hhc--------------------------------------------------------------cCCCCCCCCChHHHH
Q 017136 160 DEV--------------------------------------------------------------HSGKSFDPDDPEHMQ 177 (376)
Q Consensus 160 ~~~--------------------------------------------------------------~~~~~fd~dd~~~l~ 177 (376)
... ..++.|||||+.||+
T Consensus 274 ~~kr~P~pl~fd~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~FdKDDd~h~d 353 (640)
T 1y8q_B 274 RKRKPPVPLDWAEVQSQGEETNASDQQNEPQLGLKDQQVLDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMD 353 (640)
T ss_dssp SSSCCCCCCCHHHHHHC--------------CCCGGGSCCCHHHHHHHHHHHHHHHHHHHHHTCTTCCCCCCTTCHHHHH
T ss_pred cCCCCCCCcccCccccccccccccccccccccCCChhhhcChhhhhhhHHHHHHHHHHHhhhcccCCCcccCCCCHHHHH
Confidence 110 124579999999999
Q ss_pred HHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCc-ccccccc--cccccceeeee
Q 017136 178 WVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKT-LSNYLTY--NGVAGLHIKVT 254 (376)
Q Consensus 178 ~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~-l~~~~~~--~~~~~~~~~~~ 254 (376)
||+++||+||++|+|++.+++++++||||||||||||||+|||++++|++|+++++... .+.|+++ .+..+...+..
T Consensus 354 FV~aaaNlRA~~y~I~~~~~~~~K~iAG~IIPAIATTnAiVaGl~~lE~~Kvl~~~~~~~kn~f~n~a~~~~~~~~~~~~ 433 (640)
T 1y8q_B 354 FVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQPNPRKKLLVPCA 433 (640)
T ss_dssp HHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHTTCGGGCEEEEECSSCCTTSEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCcCCHHHHHHHhCCcccchhhHHHHHHHHHHHHHHHHHhccHHhhhhhheeeccCCCCcEEeecc
Confidence 99999999999999999999999999999999999999999999999999999976432 2345544 23344566667
Q ss_pred ecccCCCCcccC-C-cEEEEeCC-CCcHHHHHHHHHcCccccceeeEEEe---CCcEEEecCCcchhHhhhccCCCchHH
Q 017136 255 EFVKDKDCLVCG-P-GVLIELDT-SVTLEKFINLLEEHPKLQLAKASVTY---RGKNLYMQAPPVLEEMTRSNLSLPLYD 328 (376)
Q Consensus 255 ~~~~~~~C~vC~-~-~~~~~~~~-~~tl~~li~~l~~k~~~~l~~~~i~~---~~~~lY~~~~~~~~~~~~~~l~~~l~~ 328 (376)
+.+|+++|++|+ . ...+.++. ++||++|++++.++ +++++.++|++ |+++||.++.+ ++++||.|+|++
T Consensus 434 p~~p~~~c~vc~~~~~~~~~~~~~~~TL~~li~~~~~~-~~~l~~~~is~~~~~~~~ly~~~~~----~~~~~l~~~l~e 508 (640)
T 1y8q_B 434 LDPPNPNCYVCASKPEVTVRLNVHKVTVLTLQDKIVKE-KFAMVAPDVQIEDGKGTILISSEEG----ETEANNHKKLSE 508 (640)
T ss_dssp CCCCCTTCTTTSSSCEEEEEECTTTCBHHHHHHCCCCC-CTCCSSCEEEESSSSCCEEECSSSS----SSTTGGGSBGGG
T ss_pred cCCCCCCCcccCCccEEEEEEeCCCCcHHHHHHHHHHH-hhCCCCceEEEEcCCCcEEEeccch----hhHHhhhCcHHH
Confidence 778999999995 3 22334443 78999999996433 45999999999 88999987643 466799999999
Q ss_pred h-hcccccceeeeccccccccCCcceeEEEEEEEecc
Q 017136 329 L-MDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFRGV 364 (376)
Q Consensus 329 l-v~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 364 (376)
| +++| +++ .|+|..++..+.+.+.|+++
T Consensus 509 l~v~~~--~~~------~v~d~~~~~~~~i~~~~~~~ 537 (640)
T 1y8q_B 509 FGIRNG--SRL------QADDFLQDYTLLINILHSED 537 (640)
T ss_dssp GTCCTT--CEE------EEEETTTTEEEEEEEEECSC
T ss_pred hCccCC--cEE------EecCCCccEEEEEEEEecCc
Confidence 7 9999 899 99999998888888888764
No 3
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=100.00 E-value=1.5e-66 Score=560.23 Aligned_cols=353 Identities=46% Similarity=0.808 Sum_probs=328.3
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
+|+|++|||||||||+.+|||++||++|+++|+++||+++|+++..++.+.+.++++++|+||+|+||+++|++||++|+
T Consensus 443 ~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~d~vv~~~d~~~~r~~in~~~~ 522 (805)
T 2nvu_B 443 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLI 522 (805)
T ss_dssp CCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCEEEEEESCGGGSCHHHHHTCSEEEECCSCHHHHHHHHHHHH
T ss_pred CCeecccccccccccchhhcCChHHHHHHHHHHHHCCCCEEEEEeccccccHHHHHhcCCEEEECCCCHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999988778999999999999999999999999998
Q ss_pred hccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhhhh
Q 017136 81 SFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWD 160 (376)
Q Consensus 81 ~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~~~ 160 (376)
.+.++.+ |++....++|+|++|+.|+.|+++++.|+.++||+|.++..|++..+|.|+++++|+.++|||.||+.+.|+
T Consensus 523 ~~~~~~~-g~~~~~~~~p~i~~~~~g~~G~~~~~~p~~~~c~~c~~~~~p~~~~~~~c~~~~~~~~~~~~i~~a~~~~~~ 601 (805)
T 2nvu_B 523 SLLNYED-GVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWP 601 (805)
T ss_dssp HTCCEET-TEECGGGCCCEEEEEEETTEEEEEEECTTTSCCTTTSGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHH
T ss_pred HHhhccc-cccccccCCcEEEeccccCceeEEEECCCCCCceeccCCCCCCCCCCCccccCCCCCCccHHHHHHHHhhcc
Confidence 6443322 333334689999999999999999999999999999988778888999999999999999999999999999
Q ss_pred hccCC---CCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCcc
Q 017136 161 EVHSG---KSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL 237 (376)
Q Consensus 161 ~~~~~---~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l 237 (376)
..++. +.||+++++|++|+++.+++||..+||.+.+++.+++++++|+|+|+||+|||||++++|++|+|+|...++
T Consensus 602 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~e~ik~l~~~~~~l 681 (805)
T 2nvu_B 602 KEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPL 681 (805)
T ss_dssp HHCTTSTTCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCC
T ss_pred cccCCCCcccCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhcccccc
Confidence 87753 589999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred cccccccccccceeeeeecccCCCCcccCC-cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEe----CCcEEEecCCc
Q 017136 238 SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTY----RGKNLYMQAPP 312 (376)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~C~vC~~-~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~----~~~~lY~~~~~ 312 (376)
++++.|++..+.+...+.++|+|+|++|+. |..+.++++.||++|++.|+++++++++.++|++ ++++||+++++
T Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~ 761 (805)
T 2nvu_B 682 NNYLVFNDVDGLYTYTFEAERKENCPACSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVT 761 (805)
T ss_dssp CSEEEEECSBSCEEEEECCCCCTTCTTTSCCCEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSH
T ss_pred CceEEecCCCCcccccccCCCCCCCCeeCceeEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCcc
Confidence 999999999888777788889999999998 9899999889999999999999888999999998 58899999988
Q ss_pred chhHhhhccCCCchHHh-hcccccceeeeccccccccCCcceeEEEEEEEe
Q 017136 313 VLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTGQSDKKTSCLRKLRVVFR 362 (376)
Q Consensus 313 ~~~~~~~~~l~~~l~~l-v~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 362 (376)
++++.+++||+|+|+|| +++| ++| .|+|+..+..++++|+|+
T Consensus 762 ~~~~~~~~~l~~~l~~l~~~~~--~~~------~~~~~~~~~~~~~~~~~~ 804 (805)
T 2nvu_B 762 SIEERTRPNLSKTLKELGLVDG--QEL------AVADVTTPQTVLFKLHFT 804 (805)
T ss_dssp HHHHHHGGGGGSBTTTTTCCTT--CEE------EEECTTSSSCEEEEEEEC
T ss_pred chhhhhHhhhcCCHHHcCCCCC--CEE------EEEcCCCCeeEEEEEEec
Confidence 89988999999999999 9999 899 999999999999999996
No 4
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-61 Score=523.80 Aligned_cols=312 Identities=28% Similarity=0.440 Sum_probs=267.7
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCc--eEEEEEccccCcc-----hhccccCcEEEEccCCHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV--NIVPHFCRIEDKD-----ISFYNDFNIIVLGLDSIEARS 73 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v--~i~~~~~~i~~~~-----~~~~~~~DlVi~a~Dn~~~r~ 73 (376)
+|+|++|||||||||+.+|||++||++|+++++++||++ +|+++..++.+.+ .+|++++|+||+|+||+++|+
T Consensus 462 ~D~Ve~SNLnRQ~lf~~~dvG~~Ka~~aa~~l~~iNP~v~~~v~~~~~~i~~~~~~~~~~~~~~~~D~Vi~a~Dn~~aR~ 541 (1015)
T 3cmm_A 462 NDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDART 541 (1015)
T ss_dssp CCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCGGGTTTEEEECCCCSGGGTTTSCHHHHHHCSEEEECCSSHHHHH
T ss_pred CCEeccccccccccCChhhCCCHHHHHHHHHHHHHCCCCcceEEEEecccCchhhhhccHhhhccCCEEEECCCCHHHHH
Confidence 699999999999999999999999999999999999999 9999999997533 578899999999999999999
Q ss_pred HHHHHHHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhH
Q 017136 74 YINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEY 153 (376)
Q Consensus 74 ~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~ 153 (376)
++|++|+ ..++|||++|+.|+.|++++++|+.++||+|.. +|+++++|+||++++|+.|+|||+|
T Consensus 542 ~ln~~c~-------------~~~~Pli~~g~~G~~G~v~v~~p~~t~cy~c~~--dp~~~~~P~Ctl~~~P~~~~h~i~w 606 (1015)
T 3cmm_A 542 YVDRRCV-------------FYRKPLLESGTLGTKGNTQVIIPRLTESYSSSR--DPPEKSIPLCTLRSFPNKIDHTIAW 606 (1015)
T ss_dssp HHHHHHH-------------HHTCCEEEEEEETTEEEEEEECTTTBCCGGGSC--CCCCCCCCHHHHHTCCCSHHHHHHH
T ss_pred HHHHHHH-------------HcCCcEEEeCCCccccceEEEeCCCCCccCCCC--CCCCCCCCcccccCCCCCcHHHHHH
Confidence 9999997 568999999999999999999999999999984 5778999999999999999999999
Q ss_pred hhhh------------------------------------------------------hhhhc-----------------
Q 017136 154 AHLI------------------------------------------------------KWDEV----------------- 162 (376)
Q Consensus 154 a~~~------------------------------------------------------~~~~~----------------- 162 (376)
|+.+ .|+..
T Consensus 607 a~~~f~~lf~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~c~~~a~~~f~~~F~~~I~~Ll~~~ 686 (1015)
T 3cmm_A 607 AKSLFQGYFTDSAENVNMYLTQPNFVEQTLKQSGDVKGVLESISDSLSSKPHNFEDCIKWARLEFEKKFNHDIKQLLFNF 686 (1015)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHCTTHHHHHHC---CCHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHTHHHHHHHHHS
T ss_pred HHHHHHHHHhhhhhhhhhhccCchhHHHHHhccchhHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9973 01100
Q ss_pred --------------------------------------------------------------------------------
Q 017136 163 -------------------------------------------------------------------------------- 162 (376)
Q Consensus 163 -------------------------------------------------------------------------------- 162 (376)
T Consensus 687 p~d~~~~~g~~fW~~~kr~P~pl~fd~~~~~h~~fi~~~a~l~a~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~ 766 (1015)
T 3cmm_A 687 PKDAKTSNGEPFWSGAKRAPTPLEFDIYNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVIDHMIIPEFTPNAN 766 (1015)
T ss_dssp CTTCBCSTTCBSSCTTCCCCCCCCCCTTSHHHHHHHHHHHHHHHHHHTCCCSSTTSSCCHHHHHHHHTTCCCCCCCCCSS
T ss_pred CcccccccCcccccCCCCCCCCcccCCCCHHHHHHHHHHHHhHHHhcCCCCccccccCCHHHHHHHHhhCcCCCcCCccC
Confidence
Q ss_pred ----------------------------------------cCCCCCCCCChH--HHHHHHHHHHHHHHHhCCCCcccccc
Q 017136 163 ----------------------------------------HSGKSFDPDDPE--HMQWVYSEAVKRAELFGIPGVTYSLT 200 (376)
Q Consensus 163 ----------------------------------------~~~~~fd~dd~~--~l~~i~~~a~~ra~~~~I~~~~~~~~ 200 (376)
..++.|||||+. ||+||+++||+||++|+|++.+++++
T Consensus 767 ~ki~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~FeKDDd~n~h~dFi~aasNlRa~ny~I~~~~~~~~ 846 (1015)
T 3cmm_A 767 LKIQVNDDDPDPNANAANGSDEIDQLVSSLPDPSTLAGFKLEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQKT 846 (1015)
T ss_dssp CCCCSSTTSSCC---------CCHHHHTTSCCGGGGTTCCCCCCCCCTTCTTSSHHHHHHHHHHHHHHHTTCCCCCHHHH
T ss_pred ceeccchhhhcccccccccHHHHHHHHHHhccchhcccCCCCceeeecCCCchhHHHHHHHHHHHHHHHcCCCccCHHHH
Confidence 013458899888 99999999999999999999999999
Q ss_pred cccccccccccchHHHHHHHHHHHHHHHHhccCCCcccc----cccccccccceeeeeec-ccCCCCcccC--C-cEEEE
Q 017136 201 QGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN----YLTYNGVAGLHIKVTEF-VKDKDCLVCG--P-GVLIE 272 (376)
Q Consensus 201 ~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l~~----~~~~~~~~~~~~~~~~~-~~~~~C~vC~--~-~~~~~ 272 (376)
|+|||+||||||||||+|||++++|++|+++|.. ++.. |+++... ......+. ++++.|..|+ + |++++
T Consensus 847 k~iaG~IIPAIaTT~AivaGl~~lE~~K~~~~~~-~~~~~kn~f~nla~~--~~~~~~p~~~~~~~~~~~~~~t~wd~~~ 923 (1015)
T 3cmm_A 847 KFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKT-DIEQYKNGFVNLALP--FFGFSEPIASPKGEYNNKKYDKIWDRFD 923 (1015)
T ss_dssp HHHHTTCCCCCHHHHHHHHHHHHHHHHHHHTTCC-CGGGCCEEEEETTTT--EEEEECCCBCCEEEETTEEEETTTCEEE
T ss_pred HHHhCCcCccchhHHHHHHHHHHHHHHHHHhccc-chhhhhhHHHhccCC--ceeecCCCCCCCCCCCCCCCCeEEEEEE
Confidence 9999999999999999999999999999998752 3433 3333222 22222222 3455688886 5 99999
Q ss_pred eCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHhhcccc
Q 017136 273 LDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDLMDKVA 334 (376)
Q Consensus 273 ~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~lv~~g~ 334 (376)
++.++||++|++++++++ +++.++|+.|+++||++++|. +++++||+++|++|++..+
T Consensus 924 v~~~~Tl~~li~~~~~~~--~~~~~~i~~~~~~ly~~~~~~--~~~~~~l~~~l~~l~~~~~ 981 (1015)
T 3cmm_A 924 IKGDIKLSDLIEHFEKDE--GLEITMLSYGVSLLYASFFPP--KKLKERLNLPITQLVKLVT 981 (1015)
T ss_dssp EESCCBHHHHHHHHHHTT--CCEEEEEEETTEEEEETTCCH--HHHHHHTTSBHHHHHHHHS
T ss_pred ECCCCcHHHHHHHHHHHh--CCcceeeccCCcEEEecCCCc--hhhHHhccCCHHHHHHhhc
Confidence 988999999999999876 889999999999999998542 4566899999999987753
No 5
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=100.00 E-value=7.3e-36 Score=291.61 Aligned_cols=234 Identities=17% Similarity=0.224 Sum_probs=195.3
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccCCHHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC 80 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~Dn~~~r~~in~~~~ 80 (376)
+|+|+.|||||||||+++|||++||++++++|+++||+++|+++..++.+...++++++|+||+|.|+.++|.++|++|+
T Consensus 68 ~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~ 147 (346)
T 1y8q_A 68 HEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICH 147 (346)
T ss_dssp CCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHH
T ss_pred CCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999887668899999999999999999999999997
Q ss_pred hccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCC--CCC---------------------------
Q 017136 81 SFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWL--FPP--------------------------- 131 (376)
Q Consensus 81 ~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~--~p~--------------------------- 131 (376)
+.++|||++|+.|+.|++++..+ ..+|+.|.... .|.
T Consensus 148 -------------~~~ip~i~~~~~G~~G~v~~d~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~f 213 (346)
T 1y8q_A 148 -------------KNSIKFFTGDVFGYHGYTFANLG-EHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVF 213 (346)
T ss_dssp -------------HTTCEEEEEEEEBTEEEEEEECS-EEEEEEECC-----------------------CCCEEEEEEEC
T ss_pred -------------HcCCCEEEEeecccEEEEEEecC-CCCEEEcCCCCcCCCcccccCCCCCcccccCCceEEEeceeec
Confidence 67899999999999999999886 57888885431 100
Q ss_pred ---C--CCCCce--eec-cCCCCchhhHhHhhhhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCccccccccc
Q 017136 132 ---Q--VKFPLC--TLA-ETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGV 203 (376)
Q Consensus 132 ---~--~~~p~C--ti~-~~p~~~~hci~~a~~~~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~i 203 (376)
+ ...|.| +++ ..++.+.|++.|.-...|...++....+.+++++++++++.++.++..++++... ....+
T Consensus 214 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~al~~f~~~~~~~P~~~~~~~d~~~l~~~a~~~~~~~~~~~~~--~~~~~ 291 (346)
T 1y8q_A 214 CPVKEALEVDWSSEKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPDL--LPEDF 291 (346)
T ss_dssp CCHHHHTSCCSCSHHHHHHHTTSCTHHHHHHHHHHHHHHSSSCCCGGGHHHHHHHHHHHHHHHHHTTTCCGGG--SCGGG
T ss_pred cCHHHHhcCCchhhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccc--CCHHH
Confidence 0 012233 221 2567788898888888898888665544567899999999999999999876421 23344
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHhccCCCcccccccccccccce
Q 017136 204 VKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYNGVAGLH 250 (376)
Q Consensus 204 ag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l~~~~~~~~~~~~~ 250 (376)
+..+.+.++|++|++||+++||++|+++|++.|++||++||+.++..
T Consensus 292 ~~~~~~~l~pv~AiiGGi~aQEviK~it~k~~Pl~n~~~fD~~~~~~ 338 (346)
T 1y8q_A 292 VRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGNG 338 (346)
T ss_dssp GGSSCSBCHHHHHHHHHHHHHHHHHHHHTBSCCCCSEEEEETTTTEE
T ss_pred HHHhcCCccHHHHHHHHHHHHHHHHHhcCCCcccccEEEEEccccce
Confidence 55668899999999999999999999999999999999999988764
No 6
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=100.00 E-value=1e-34 Score=276.09 Aligned_cols=188 Identities=22% Similarity=0.373 Sum_probs=143.1
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccC-cc-hhcc-----------ccCcEEEEccC
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED-KD-ISFY-----------NDFNIIVLGLD 67 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~-~~-~~~~-----------~~~DlVi~a~D 67 (376)
+|+||+|||+||| |+.+|+|++||++|+++|+++||+++|+++..++++ .+ .+|+ +++|+||+|+|
T Consensus 68 ~D~Ve~sNL~Rq~-~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D 146 (292)
T 3h8v_A 68 YDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD 146 (292)
T ss_dssp CCBC-------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS
T ss_pred CCccChhhccccc-CChhhcCchHHHHHHHHHHhhCCCcEEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCc
Confidence 5999999999997 789999999999999999999999999999999986 33 4554 68999999999
Q ss_pred CHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccCC--cceeEEEEeCCCCCeeeeccCCCCCCC-CCCceeeccCC
Q 017136 68 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG--FKGHARVIIPGVTPCFECTIWLFPPQV-KFPLCTLAETP 144 (376)
Q Consensus 68 n~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G--~~G~v~~~~p~~t~c~~C~~~~~p~~~-~~p~Cti~~~p 144 (376)
|+++|.++|++|+ +.++|||++|+.| +.|++.++.|+.++||+|+++..+++. ..+.|.
T Consensus 147 n~~~R~~in~~c~-------------~~~~Pli~~gv~~~~~~Gqv~~~~pg~t~Cy~Cl~p~~~~~~~~~~~~~----- 208 (292)
T 3h8v_A 147 NFEARMTINTACN-------------ELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVAANIDEKTLK----- 208 (292)
T ss_dssp SHHHHHHHHHHHH-------------HHTCCEEEEEECTTSSEEEEEEECTTTSCCTTSSSCCCCCCC------------
T ss_pred chhhhhHHHHHHH-------------HhCCCEEEeeeecceeEEEEEEECCCCCCCHhhcCCccccccccccchh-----
Confidence 9999999999997 5789999999985 899999999999999999975322211 001110
Q ss_pred CCchhhHhHhhhhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHH
Q 017136 145 RTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACAL 224 (376)
Q Consensus 145 ~~~~hci~~a~~~~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~ 224 (376)
. +|...++++|+.++||+++|+
T Consensus 209 -------------------------------------------------------~---~gvc~~~l~~~~g~vgslqA~ 230 (292)
T 3h8v_A 209 -------------------------------------------------------R---EGVCAASLPTTMGVVAGILVQ 230 (292)
T ss_dssp -------------------------------------------------------C---HHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------h---cCcccCCcchHHHHHHHHHHH
Confidence 0 111123478899999999999
Q ss_pred HHHHHhccCCCcccccccccccccceeeeeecccCCCCc--ccCC
Q 017136 225 ETLKIASGCSKTLSNYLTYNGVAGLHIKVTEFVKDKDCL--VCGP 267 (376)
Q Consensus 225 EalK~L~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~C~--vC~~ 267 (376)
|++|+|+|.+++ ..++.||+....+ ..+++.|+|+|+ +|+.
T Consensus 231 EalK~L~g~g~~-~~ll~~D~~~~~~-~~~~~~~~p~C~~~~Cg~ 273 (292)
T 3h8v_A 231 NVLKFLLNFGTV-SFYLGYNAMQDFF-PTMSMKPNPQCDDRNCRK 273 (292)
T ss_dssp HHHHHHHTCSCC-CSEEEEETTTTBC-CEECCCCCTTCSCHHHHH
T ss_pred HHHHHHhCCCCC-CeEEEEECCCCcE-EEEecCCCcCcCccccCC
Confidence 999999998765 5778889877654 477888999999 9995
No 7
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=100.00 E-value=1.1e-32 Score=258.00 Aligned_cols=184 Identities=22% Similarity=0.395 Sum_probs=155.6
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
.|+|+.||||||+||+.+|+|++||++++++++++||+++|+++..++.+.+ .++++++|+||+|+|+.++|.++|++|
T Consensus 60 ~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~ 139 (251)
T 1zud_1 60 DDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAAC 139 (251)
T ss_dssp CCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHH
T ss_pred CCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999998887644 678899999999999999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCC-CCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhh
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGV-TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 158 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~-t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~ 158 (376)
+ +.++|||++++.|+.|++.++.|+. ++||+|+++..+++ .+.|
T Consensus 140 ~-------------~~~~p~i~~~~~g~~G~v~~~~p~~~~~c~~cl~~~~~~~--~~~~-------------------- 184 (251)
T 1zud_1 140 V-------------ALNTPLITASAVGFGGQLMVLTPPWEQGCYRCLWPDNQEP--ERNC-------------------- 184 (251)
T ss_dssp H-------------HTTCCEEEEEEEBTEEEEEEECTTCTTCCHHHHCC-------------------------------
T ss_pred H-------------HhCCCEEEEeccccceEEEEEccCCCCCcEEEeCCCCCCC--CCcc--------------------
Confidence 7 5789999999999999999999987 79999987422110 0011
Q ss_pred hhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCccc
Q 017136 159 WDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS 238 (376)
Q Consensus 159 ~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l~ 238 (376)
. ..+.++|+.+++|+++++|++|+|+|...+++
T Consensus 185 -----------------------------~------------------~~g~~~p~~~~~g~~~A~e~lk~l~g~~~~~~ 217 (251)
T 1zud_1 185 -----------------------------R------------------TAGVVGPVVGVMGTLQALEAIKLLSGIETPAG 217 (251)
T ss_dssp -------------------------------------------------CCBCHHHHHHHHHHHHHHHHHHHHTCCCCCS
T ss_pred -----------------------------c------------------cCCchHHHHHHHHHHHHHHHHHHHhCCCCcCC
Confidence 0 12346788999999999999999999887777
Q ss_pred ccccccccccceeeeeecccCCCCcccCC
Q 017136 239 NYLTYNGVAGLHIKVTEFVKDKDCLVCGP 267 (376)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~C~vC~~ 267 (376)
+++.||+..+.. ..+.+.++|+|++|+.
T Consensus 218 ~~~~~d~~~~~~-~~~~~~~~p~C~~C~~ 245 (251)
T 1zud_1 218 ELRLFDGKSSQW-RSLALRRASGCPVCGG 245 (251)
T ss_dssp EEEEEETTTTEE-EEEECCCCTTCTTTCC
T ss_pred cEEEEECCCCEE-EEEecCCCcCCCccCC
Confidence 788888877654 4677889999999986
No 8
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=99.97 E-value=2.4e-31 Score=248.53 Aligned_cols=184 Identities=23% Similarity=0.438 Sum_probs=154.2
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
.|.|+.||||||+||+++|+|++|+++++++++++||+++|+++..++.+.+ .++++++|+||+|+|+.++|.++|++|
T Consensus 63 ~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~ 142 (249)
T 1jw9_B 63 FDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGC 142 (249)
T ss_dssp CCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHH
T ss_pred CCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHHH
Confidence 4889999999999999999999999999999999999999999988887544 567899999999999999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCC-CCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhhh
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGV-TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIK 158 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~-t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~~ 158 (376)
+ +.++|+|++++.|+.|++.++.|+. ++||+|.++..++. .+.|.
T Consensus 143 ~-------------~~~~p~i~~~~~g~~g~v~~~~p~~~~~c~~c~~~~~~~~--~~~c~------------------- 188 (249)
T 1jw9_B 143 F-------------AAKVPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGEN--ALTCV------------------- 188 (249)
T ss_dssp H-------------HHTCCEEEEEEEBTEEEEEEECCCTTCCCTHHHHTTCCC---------------------------
T ss_pred H-------------HcCCCEEEeeeccceEEEEEEeCCCCCCceEEECCCCCcc--ccccc-------------------
Confidence 7 5689999999999999999999986 79999987432110 01110
Q ss_pred hhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCcc-
Q 017136 159 WDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL- 237 (376)
Q Consensus 159 ~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l- 237 (376)
..+.++++++++|+++++|++|+|+|...++
T Consensus 189 ------------------------------------------------~~g~~~~~~~~~g~~~a~e~lk~l~g~~~~~~ 220 (249)
T 1jw9_B 189 ------------------------------------------------EAGVMAPLIGVIGSLQAMEAIKMLAGYGKPAS 220 (249)
T ss_dssp -------------------------------------------------CCBCHHHHHHHHHHHHHHHHHHHHTCSCCCB
T ss_pred ------------------------------------------------ccCCcchHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence 1245778999999999999999999987776
Q ss_pred cccccccccccceeeeeecccCCCCcccCC
Q 017136 238 SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP 267 (376)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~C~vC~~ 267 (376)
++++.||+..+.. ..+++.++|+|++|+.
T Consensus 221 ~~~~~~d~~~~~~-~~~~~~~~~~C~~C~~ 249 (249)
T 1jw9_B 221 GKIVMYDAMTCQF-REMKLMRNPGCEVCGQ 249 (249)
T ss_dssp SEEEEEETTTTEE-EEEECCCCTTCTTTC-
T ss_pred CeEEEEECCCCEE-EEEecCCCcCCCCcCc
Confidence 4567788776653 4677889999999983
No 9
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=99.97 E-value=3.8e-31 Score=258.91 Aligned_cols=197 Identities=23% Similarity=0.340 Sum_probs=152.4
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcc-hhccccCcEEEEccCCHH-HHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIE-ARSYINAV 78 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~-~~~~~~~DlVi~a~Dn~~-~r~~in~~ 78 (376)
.|+|+.|||+|||||+.+|+|++||++++++++++||+++|+++..++.+.+ .+.++++|+||+|+||+. +|.++|++
T Consensus 150 ~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DlVvd~~Dn~~~~r~~ln~~ 229 (353)
T 3h5n_A 150 NDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVPEADIWVVSADHPFNLINWVNKY 229 (353)
T ss_dssp CCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEECCCCSGGGGGGSCCCSEEEECCCCSTTHHHHHHHH
T ss_pred CCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeecccCchhhhhHhccCCEEEEecCChHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999998755 322899999999999999 99999999
Q ss_pred HHhccccccCCCcccCCCceEEEeccCCcceeEEEE-eCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhhh
Q 017136 79 ACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVI-IPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI 157 (376)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~-~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~~ 157 (376)
|+ +.++|||++|+.|..|++..+ .|+.++||+|.++..+. |.
T Consensus 230 c~-------------~~~~p~i~~~~~g~~g~~g~~~~p~~~~C~~C~~~~~~~------------~~------------ 272 (353)
T 3h5n_A 230 CV-------------RANQPYINAGYVNDIAVFGPLYVPGKTGCYECQKVVADL------------YG------------ 272 (353)
T ss_dssp HH-------------HTTCCEEEEEEETTEEEEEEEECTTTSCCTTTTC-------------------------------
T ss_pred HH-------------HhCCCEEEEEEeCCEEEEEEEEcCCCCCChhhcCCCcCC------------Cc------------
Confidence 97 689999999999999998765 59999999999642110 00
Q ss_pred hhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHHHHHHHHHHHHHHhccCCCcc
Q 017136 158 KWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL 237 (376)
Q Consensus 158 ~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~aiiagl~~~EalK~L~g~~~~l 237 (376)
.+++... ..+.. + .. ..-.+.++|+++++|+++|+|++|+|+|.+.+.
T Consensus 273 ------------~~~~~~~--------~~c~~--~--------~~--~~~~gv~~~~~~iig~l~a~Ealk~l~g~~~~~ 320 (353)
T 3h5n_A 273 ------------SEKENID--------HKIKL--I--------NS--RFKPATFAPVNNVAAALCAADVIKFIGKYSEPL 320 (353)
T ss_dssp --------------CHHHH--------HHHHH--H--------HH--TCCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCT
T ss_pred ------------cccchhh--------hhhhh--h--------cc--cccCCchhhHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 0000000 00000 0 00 001356789999999999999999999976664
Q ss_pred --cccccccccccceeeeeecccCCCCcccCC
Q 017136 238 --SNYLTYNGVAGLHIKVTEFVKDKDCLVCGP 267 (376)
Q Consensus 238 --~~~~~~~~~~~~~~~~~~~~~~~~C~vC~~ 267 (376)
...+.+|...... ..+++.|+|+|++||.
T Consensus 321 ~~g~l~~~d~~~~~~-~~~~~~~~p~C~~Cg~ 351 (353)
T 3h5n_A 321 SLNKRIGIWSDEIKI-HSQNMGRSPVCSVCGN 351 (353)
T ss_dssp TBTEEEEECSSSSCE-EEEECCCCTTCTTTC-
T ss_pred cCCeEEEEECCCCEE-EEEccCCCcCCCCCCC
Confidence 4567777765443 4677889999999985
No 10
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=99.97 E-value=8.8e-31 Score=253.02 Aligned_cols=187 Identities=20% Similarity=0.219 Sum_probs=147.1
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEcccc---------------Cc-chhccccCcEEEE
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE---------------DK-DISFYNDFNIIVL 64 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~---------------~~-~~~~~~~~DlVi~ 64 (376)
.|+|+.|||+|||||+.+|+|++||++|+++++++||+++++++..++. .. ..++++++|+||+
T Consensus 66 ~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd 145 (340)
T 3rui_A 66 NGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 145 (340)
T ss_dssp CCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred CCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEe
Confidence 5899999999999999999999999999999999999999999987651 11 2578899999999
Q ss_pred ccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccCCcceeEEEEe-------CCCCCeeeeccCCCCCCCCCCc
Q 017136 65 GLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII-------PGVTPCFECTIWLFPPQVKFPL 137 (376)
Q Consensus 65 a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~-------p~~t~c~~C~~~~~p~~~~~p~ 137 (376)
|+||+++|.++|++|+ ..++|+|+++ .|+.|++.++. |+.++||+|..+..|.......
T Consensus 146 ~tDn~~tR~lin~~c~-------------~~~~plI~aa-~G~~G~l~v~~g~~~~~~~~~~~Cy~C~~~~~p~~~~~~~ 211 (340)
T 3rui_A 146 LVDSRESRWLPSLLSN-------------IENKTVINAA-LGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDSLTDR 211 (340)
T ss_dssp CCSSTGGGHHHHHHHH-------------HTTCEEEEEE-ECSSEEEEEECCCCCSSCCCCBCCGGGGSSSCCCCCTTTC
T ss_pred cCCCHHHHHHHHHHHH-------------HcCCcEEEee-ecceEEEEEeecccccCCCCCCCeeeeCCCCCCccccccc
Confidence 9999999999999997 6899999987 99999998864 5678999999764332211000
Q ss_pred eeeccCCCCchhhHhHhhhhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHH
Q 017136 138 CTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAI 217 (376)
Q Consensus 138 Cti~~~p~~~~hci~~a~~~~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~ai 217 (376)
+ ..+.++ .++|+.++
T Consensus 212 ----------------------------------------------------------t---~~~~c~----v~~p~vg~ 226 (340)
T 3rui_A 212 ----------------------------------------------------------T---LDQMST----VTRPGVAM 226 (340)
T ss_dssp ----------------------------------------------------------C---CGGGGG----CSCHHHHH
T ss_pred ----------------------------------------------------------c---cCCCcc----eecchHHH
Confidence 0 000111 36789999
Q ss_pred HHHHHHHHHHHHhccCCCcc------ccc-ccccccccceeeeeecc--cCCCCcccCC
Q 017136 218 ISAACALETLKIASGCSKTL------SNY-LTYNGVAGLHIKVTEFV--KDKDCLVCGP 267 (376)
Q Consensus 218 iagl~~~EalK~L~g~~~~l------~~~-~~~~~~~~~~~~~~~~~--~~~~C~vC~~ 267 (376)
||+++|+|++|+|.|.+.+. ... +.|++....+. .+++. ++|+|++|+.
T Consensus 227 igs~qA~E~lk~l~~~~~~~~~~~~~G~l~~~~d~~~~~f~-~~~l~~~~~~~C~~C~~ 284 (340)
T 3rui_A 227 MASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFLHNFS-ILKLETPAYEHCPACSP 284 (340)
T ss_dssp HHHHHHHHHHHHHTSCCCTTSSEETTEECCSEEEEETTTTE-EEEECCBCCTTCTTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCccccCccCcccEEEecCcCCce-EEEecCCCCCCCCCCCH
Confidence 99999999999999876543 222 56777665443 44554 5899999995
No 11
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=99.96 E-value=5.5e-29 Score=255.06 Aligned_cols=187 Identities=20% Similarity=0.245 Sum_probs=145.8
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccc---------------cCcc-hhccccCcEEEE
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI---------------EDKD-ISFYNDFNIIVL 64 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i---------------~~~~-~~~~~~~DlVi~ 64 (376)
.|+|+.|||+||+||+.+|||++||++|+++|+++||+++|+++..+| +..+ .++++++|+||+
T Consensus 358 ~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd 437 (615)
T 4gsl_A 358 NGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 437 (615)
T ss_dssp CCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred CCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEe
Confidence 589999999999999999999999999999999999999999998765 1112 568899999999
Q ss_pred ccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccCCcceeEEEEe-------CCCCCeeeeccCCCCCCCCCCc
Q 017136 65 GLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII-------PGVTPCFECTIWLFPPQVKFPL 137 (376)
Q Consensus 65 a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~-------p~~t~c~~C~~~~~p~~~~~p~ 137 (376)
|+||+++|.++|++|+ ..++|+|+++ .|+.|++.++. |+.++||+|..+..|......
T Consensus 438 ~tDn~~tR~~ln~~c~-------------~~~~PlI~aa-lG~~Gql~v~~g~~~~~~~~~~~CY~Cl~~~~P~~~~~~- 502 (615)
T 4gsl_A 438 LVDSRESRWLPSLLSN-------------IENKTVINAA-LGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDSLTD- 502 (615)
T ss_dssp CCSSGGGTHHHHHHHH-------------HTTCEEEEEE-ECSSEEEEEECCC------CCCCCTTTSCSSCTTSCTTT-
T ss_pred cCCCHHHHHHHHHHHH-------------HcCCeEEEEE-ccceeEEEEeecccccCCCCCCCceeeCCCCCCcccccc-
Confidence 9999999999999997 6899999987 89999998764 467999999965433211000
Q ss_pred eeeccCCCCchhhHhHhhhhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHH
Q 017136 138 CTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAI 217 (376)
Q Consensus 138 Cti~~~p~~~~hci~~a~~~~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~ai 217 (376)
+ + ..+.++ .++|+.++
T Consensus 503 -------r--------------------------------------------------t---l~~~C~----Vl~P~vgi 518 (615)
T 4gsl_A 503 -------R--------------------------------------------------T---LDQMCT----VTRPGVAM 518 (615)
T ss_dssp -------T--------------------------------------------------T---TTCTTC----CCCHHHHH
T ss_pred -------c--------------------------------------------------c---cccCcc----eecchHHH
Confidence 0 0 000111 46789999
Q ss_pred HHHHHHHHHHHHhccCCCcc------ccc-ccccccccceeeeeecc--cCCCCcccCC
Q 017136 218 ISAACALETLKIASGCSKTL------SNY-LTYNGVAGLHIKVTEFV--KDKDCLVCGP 267 (376)
Q Consensus 218 iagl~~~EalK~L~g~~~~l------~~~-~~~~~~~~~~~~~~~~~--~~~~C~vC~~ 267 (376)
||+++|+|+||+|.|.+.+. ... +.|++...... ...+. ++|+|++|+.
T Consensus 519 igs~qA~EaLk~Ll~~g~~~~~~~~~G~l~~~~dg~~~~f~-~~~l~~~~~p~C~~C~~ 576 (615)
T 4gsl_A 519 MASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFLHNFS-ILKLETPAYEHCPACSP 576 (615)
T ss_dssp HHHHHHHHHHHHHHSCCCTTSSEETTEECCSEEEEETTTTE-EEEECCCCCTTCTTTCH
T ss_pred HHHHHHHHHHHHHhCCCCcccCcCcCCCCcEEEeccCCcce-EEeccCCCCCCCCCCCH
Confidence 99999999999999876442 222 56777665443 44454 6899999995
No 12
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=99.95 E-value=1.8e-28 Score=251.11 Aligned_cols=133 Identities=22% Similarity=0.234 Sum_probs=117.2
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccC---cchhccccCcEEEEccCCHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED---KDISFYNDFNIIVLGLDSIEARSYINA 77 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~---~~~~~~~~~DlVi~a~Dn~~~r~~in~ 77 (376)
+|+|+.|||||||||+.+|||++||++|+++|+++||+++|+++...+.+ ...+++++||+||+|.||.++|.++|+
T Consensus 64 ~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~ 143 (531)
T 1tt5_A 64 GNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLAD 143 (531)
T ss_dssp CCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHH
T ss_pred CCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999988864 457899999999999999999999999
Q ss_pred HHHhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhH
Q 017136 78 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCI 151 (376)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci 151 (376)
+|+ ..++|+|++|+.|+.|+++++.|+ ..|+++ .|++...+.|++..+|..++||-
T Consensus 144 ~c~-------------~~~iplI~~~~~G~~G~v~~~~p~-~~~~d~----~~~~~~~~lr~~~p~P~~~~~~~ 199 (531)
T 1tt5_A 144 VLW-------------NSQIPLLICRTYGLVGYMRIIIKE-HPVIES----HPDNALEDLRLDKPFPELREHFQ 199 (531)
T ss_dssp HHH-------------HTTCCEEEEEEETTEEEEEEECSC-EEESCC----CCSSCCCCCCSSSCCHHHHHHHH
T ss_pred HHH-------------HcCCCEEEEEecCCeEEEEEEcCC-ceeccC----CCCCCCCcccccCCCCCchhhhh
Confidence 997 678999999999999999999994 333333 35566778888888888877763
No 13
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=99.95 E-value=9.3e-28 Score=245.94 Aligned_cols=188 Identities=21% Similarity=0.230 Sum_probs=139.5
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEcccc---------------Ccc-hhccccCcEEEE
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE---------------DKD-ISFYNDFNIIVL 64 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~---------------~~~-~~~~~~~DlVi~ 64 (376)
.|+||.|||+||+||+.+|||++||++|+++|+++||+++|+++..++. ..+ .++++++|+||+
T Consensus 359 ~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvd 438 (598)
T 3vh1_A 359 NGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 438 (598)
T ss_dssp CSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred CCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEE
Confidence 5999999999999999999999999999999999999999999997751 122 568899999999
Q ss_pred ccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccCCcceeEEEEe---C----CCCCeeeeccCCCCCCCCCCc
Q 017136 65 GLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII---P----GVTPCFECTIWLFPPQVKFPL 137 (376)
Q Consensus 65 a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~---p----~~t~c~~C~~~~~p~~~~~p~ 137 (376)
|+||+++|..+|++|+ ..++|+|++ ..|+.|++.++. | +.++||+|..+..|+....
T Consensus 439 atDn~~tR~lin~~c~-------------~~~~plI~a-a~G~~Gqv~v~~g~~p~~~~~~~~Cy~Cl~~~~p~~~~~-- 502 (598)
T 3vh1_A 439 LVDSRESRWLPSLLSN-------------IENKTVINA-ALGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDSLT-- 502 (598)
T ss_dssp CCSBGGGTHHHHHHHH-------------HTTCEEEEE-EECSSEEEEEEEC--------CBCCTTTSCSSCSSSCTT--
T ss_pred CCCCHHHHHHHHHHHH-------------hcCCCEEEE-EECCccEEEEEccCCCccCCCCCCceeecCccCCCcccc--
Confidence 9999999999999997 678999996 589999998774 3 3578999986543321100
Q ss_pred eeeccCCCCchhhHhHhhhhhhhhccCCCCCCCCChHHHHHHHHHHHHHHHHhCCCCcccccccccccccccccchHHHH
Q 017136 138 CTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAI 217 (376)
Q Consensus 138 Cti~~~p~~~~hci~~a~~~~~~~~~~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~iiPaiatt~ai 217 (376)
+ + .+ ...+ +.++|+.++
T Consensus 503 ~------~---------------------------------------------tl--------d~~C----~Vl~p~vgv 519 (598)
T 3vh1_A 503 D------R---------------------------------------------TL--------DQMC----TVTRPGVAM 519 (598)
T ss_dssp T------T---------------------------------------------TT--------TBSC----CCSCTHHHH
T ss_pred c------c---------------------------------------------cc--------CCCC----CccCcHHHH
Confidence 0 0 00 0001 135778899
Q ss_pred HHHHHHHHHHHHhccCCC-----ccccc--ccccccccce-eeeeecccCCCCcccCC
Q 017136 218 ISAACALETLKIASGCSK-----TLSNY--LTYNGVAGLH-IKVTEFVKDKDCLVCGP 267 (376)
Q Consensus 218 iagl~~~EalK~L~g~~~-----~l~~~--~~~~~~~~~~-~~~~~~~~~~~C~vC~~ 267 (376)
+|+++|+|++|+|.|.+. ++... ..++|..... .......++|+|++||.
T Consensus 520 igslqA~Ealk~Llg~~~ap~~~~~~g~l~~~l~g~l~~f~~~~l~~~r~~~C~~Cg~ 577 (598)
T 3vh1_A 520 MASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPACSP 577 (598)
T ss_dssp HHHHHHHHHHHHHHSCCCSSSSEETTEECCSEEEEETTTTEEEEECCBCCTTCTTTSH
T ss_pred HHHHHHHHHHHHHhCCCcccccccccccccceeecccccceeEeccCCCCCCCCCCch
Confidence 999999999999998754 22111 1233322221 12233458999999995
No 14
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.5e-26 Score=251.27 Aligned_cols=229 Identities=16% Similarity=0.198 Sum_probs=166.2
Q ss_pred CCeecccCCccccCcCcCCCCCcHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEccC-CHHHHHHHHHHH
Q 017136 1 MDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVA 79 (376)
Q Consensus 1 ~D~Ve~sNLnRQflf~~~diG~~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~D-n~~~r~~in~~~ 79 (376)
.|+|+.|||+|||||+.+|||++||++++++|+++||.++|+++...+++ ++++++|+||+|.| +.++|.++|++|
T Consensus 59 ~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lNP~v~v~~~~~~l~~---~~l~~~DvVv~~~d~~~~~r~~ln~~c 135 (1015)
T 3cmm_A 59 PEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDSLDDV---TQLSQFQVVVATDTVSLEDKVKINEFC 135 (1015)
T ss_dssp CSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCTTSCEEECCCCCCS---TTGGGCSEEEECTTSCHHHHHHHHHHH
T ss_pred CCEechhhhccccccChhhcChHHHHHHHHHHHHHCCCCeEEEecCCCCH---HHHhcCCEEEEcCCCCHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999887743 68999999999999 999999999999
Q ss_pred HhccccccCCCcccCCCceEEEeccCCcceeEEEEeCCCCCeeeeccCCCCCCCCCCceeeccCCCCchhhHhHhhh---
Q 017136 80 CSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHL--- 156 (376)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~pli~~g~~G~~G~v~~~~p~~t~c~~C~~~~~p~~~~~p~Cti~~~p~~~~hci~~a~~--- 156 (376)
+ +.++|+|.+++.|+.|++++. .++||+|..+..+++.+..+|++ +.| ...||+.+.++
T Consensus 136 ~-------------~~~iplI~~~~~G~~G~v~~d---~~~~~~c~~~~~~~p~~~~i~~i-~~p-~~v~~l~~~~h~~~ 197 (1015)
T 3cmm_A 136 H-------------SSGIRFISSETRGLFGNTFVD---LGDEFTVLDPTGEEPRTGMVSDI-EPD-GTVTMLDDNRHGLE 197 (1015)
T ss_dssp H-------------HHTCEEEEEEEETTEEEEEEE---CCSCEEESBSSCCCCCEEEEEEE-CTT-CEEEESTTCCCCCC
T ss_pred H-------------HcCCCEEEEEecccEEEEEec---CCCceEEeeCCCCCCccccccCC-CCC-ceeEeeecccccCC
Confidence 7 578999999999999999763 46899999765445556666777 444 25677654431
Q ss_pred ----hhhhhc------------------------------------------c---------------CCC----CCCCC
Q 017136 157 ----IKWDEV------------------------------------------H---------------SGK----SFDPD 171 (376)
Q Consensus 157 ----~~~~~~------------------------------------------~---------------~~~----~fd~d 171 (376)
+.|.+. . .+. .|.+.
T Consensus 198 ~gd~v~F~ev~gm~elN~~e~~~i~~~~p~~f~I~Dts~~~~yv~~g~~~qvk~p~~i~f~~l~~~l~~p~~l~~d~~k~ 277 (1015)
T 3cmm_A 198 DGNFVRFSEVEGLDKLNDGTLFKVEVLGPFAFRIGSVKEYGEYKKGGIFTEVKVPRKISFKSLKQQLSNPEFVFSDFAKF 277 (1015)
T ss_dssp TTCEEEEECCBTSGGGGSSCCEECEEEETTEEECSCCTTTCCCCBCCEEEECCCCEEECCCCHHHHHHSCCBCCSCGGGT
T ss_pred CCCeEEEEeeccchhhcCccceeeEEcCCceeEecccchhhhhhcCceeEEecCCcccCHHHHHHHHcChHHHHHHHhcc
Confidence 000000 0 010 11110
Q ss_pred -ChHHHHHHHHHHHHHHHHh-CC-CCc------------------------------ccccccccccccccccchHHHHH
Q 017136 172 -DPEHMQWVYSEAVKRAELF-GI-PGV------------------------------TYSLTQGVVKNIIPAIASTNAII 218 (376)
Q Consensus 172 -d~~~l~~i~~~a~~ra~~~-~I-~~~------------------------------~~~~~~~iag~iiPaiatt~aii 218 (376)
.+..+.+...+.......+ |- |+. +...++.++...-..++|++|++
T Consensus 278 ~~~~~l~~~~~Al~~F~~~~~gr~P~~~~~~D~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~el~pvaA~i 357 (1015)
T 3cmm_A 278 DRAAQLHLGFQALHQFAVRHNGELPRTMNDEDANELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFF 357 (1015)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCCCTTCHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccccCcHHHHHHHHHhcCcccCcHHHHh
Confidence 1122333344444444455 32 221 11112222222334689999999
Q ss_pred HHHHHHHHHHHhccCCCcccccccccccccce
Q 017136 219 SAACALETLKIASGCSKTLSNYLTYNGVAGLH 250 (376)
Q Consensus 219 agl~~~EalK~L~g~~~~l~~~~~~~~~~~~~ 250 (376)
||+++||++|+++|++.|+++|++|++...+.
T Consensus 358 GGivAQEVIKaiT~kf~Pi~~~~~~d~~~~~~ 389 (1015)
T 3cmm_A 358 GGLVAQEVLKACSGKFTPLKQFMYFDSLESLP 389 (1015)
T ss_dssp HHHHHHHHHHHHHCBSCCCCSEEEEECGGGSC
T ss_pred cchHHHHHHHHhccCCCcccceEEecchhhcc
Confidence 99999999999999999999999999877654
No 15
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=99.68 E-value=2.1e-17 Score=130.90 Aligned_cols=91 Identities=26% Similarity=0.348 Sum_probs=82.4
Q ss_pred ccCC-cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeC----CcEEEecCCcchhHhhhccCCCchHHh-hcccccce
Q 017136 264 VCGP-GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYR----GKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDI 337 (376)
Q Consensus 264 vC~~-~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~----~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g~~~~ 337 (376)
+||. ...+++++++||++||+.|++++.+++..|+|+++ ++.||+++||.+++.++.||+|+|.|| +.+| +|
T Consensus 1 ~Cg~~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g--~e 78 (98)
T 1y8x_B 1 GSSQLPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDG--QE 78 (98)
T ss_dssp ----CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTT--CE
T ss_pred CCCCCcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCC--CE
Confidence 4776 66788999999999999999998899999999999 899999999999999999999999999 9999 89
Q ss_pred eeeccccccccCCcceeEEEEEEEe
Q 017136 338 LHVTGVTGQSDKKTSCLRKLRVVFR 362 (376)
Q Consensus 338 ~~~~~~~~~~d~~~~~~~~~~~~~~ 362 (376)
| .|||++.|.+++|+|+|.
T Consensus 79 i------~VtD~~~p~~~~~rl~f~ 97 (98)
T 1y8x_B 79 L------AVADVTTPQTVLFKLHFT 97 (98)
T ss_dssp E------EEECTTCSSCEEEEEEC-
T ss_pred E------EEECCCCcccEEEEEEec
Confidence 9 999999999999999996
No 16
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=99.60 E-value=2.6e-16 Score=147.83 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=40.0
Q ss_pred CCCCCCCChH--HHHHHHHHHHHHHHHhCCCCcccccccccccccc
Q 017136 165 GKSFDPDDPE--HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNII 208 (376)
Q Consensus 165 ~~~fd~dd~~--~l~~i~~~a~~ra~~~~I~~~~~~~~~~iag~ii 208 (376)
++.|||||+. ||+||+++||+||++|||+..+++++|+|||+||
T Consensus 231 pl~FeKDDd~N~hmdFItAaSNLRA~nY~I~~~dr~~~K~IAG~II 276 (276)
T 1z7l_A 231 PIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKII 276 (276)
T ss_dssp CCCCCSSCTTSSHHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTC--
T ss_pred CcceecCCCcccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCcC
Confidence 4569999999 9999999999999999999999999999999997
No 17
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=97.31 E-value=0.00038 Score=56.73 Aligned_cols=61 Identities=16% Similarity=0.192 Sum_probs=48.3
Q ss_pred CCcHHHHHHHHHcCccccceeeEEEe--CCcEEEecCCcchhHhhhccCCCchHHh-hcccccceeeeccccccccCCcc
Q 017136 276 SVTLEKFINLLEEHPKLQLAKASVTY--RGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTGQSDKKTS 352 (376)
Q Consensus 276 ~~tl~~li~~l~~k~~~~l~~~~i~~--~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g~~~~~~~~~~~~~~d~~~~ 352 (376)
.+||++|++.++.+++|+ +..+|.- ++++||.. ++ .+||.|+|++| +++| ++| .|+|....
T Consensus 19 ~~TL~dLV~~l~~~~gy~-~eiSV~~~~~~rLLyD~---Df----DDnl~k~L~dLgv~~g--sfL------tv~DEdde 82 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYP-QDISLLDASNQRLLFDY---DF----EDLNDRTLSEINLGNG--SII------LFSDEEGD 82 (127)
T ss_dssp HCBHHHHHHHHHHHHTCC-SSEEEEETTTTEEEEET---TB----CTTTTSBTTTTTCCTT--CEE------EEEESCCS
T ss_pred ccCHHHHHHHHHHhcCCC-CcEEEEecCCCCeEeCC---Cc----cccccCcHHHcCcCCC--cEE------EEEccccc
Confidence 479999999998888665 3566662 47899986 33 35999999999 9999 799 88887654
No 18
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=89.26 E-value=0.3 Score=45.31 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=29.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHhCCCC
Q 017136 164 SGKSFDPDDPEHMQWVYSEAVKRAELFGIPG 194 (376)
Q Consensus 164 ~~~~fd~dd~~~l~~i~~~a~~ra~~~~I~~ 194 (376)
.|+.||..|+.|++||.++|+++|..|||++
T Consensus 135 ~PL~fd~~~~~h~~fI~aaa~L~A~~~gi~~ 165 (276)
T 1z7l_A 135 HPLTFDVNNTLHLDYVMAAANLFAQTYGLTG 165 (276)
T ss_dssp CCCCCCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCcccCCCchHHHHHHHHHHHHHHHHcCCCC
Confidence 4788999999999999999999999999986
No 19
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=52.66 E-value=4.1 Score=30.07 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=36.9
Q ss_pred EEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccccccee
Q 017136 270 LIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 338 (376)
Q Consensus 270 ~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g~~~~~ 338 (376)
+++++++.|+.+|.+.+.++. ++. .....||..++|. .+.. ..-.++|++| +++| +.|
T Consensus 17 Ri~v~~~~t~~~L~~~I~~~~--~i~-----~~~~~l~~~~~p~-~~l~-~~~~~~l~~lgl~hG--d~l 75 (80)
T 2pjh_A 17 RITATKRETAATFLKKVAKEF--GFQ-----NNGFSVYINRNKT-GEIT-ASSSKSLHLLKIKHG--DLL 75 (80)
T ss_dssp ECCCCSSCCHHHHHHHHHHHT--CCC-----TTTCCCCCSCCGG-GGSS-SCCCCTTTTTCCCTT--CCE
T ss_pred EEEcCCcChHHHHHHHHHHHc--CCC-----CCcceEEecCCCC-Cccc-CCCCCCHHHcCCCCC--CEE
Confidence 556677789999999998764 322 2333556666551 1111 1246789999 9999 555
No 20
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=43.39 E-value=54 Score=23.65 Aligned_cols=55 Identities=20% Similarity=0.164 Sum_probs=35.8
Q ss_pred EEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hcccccceee
Q 017136 269 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDILH 339 (376)
Q Consensus 269 ~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g~~~~~~ 339 (376)
..+.+.++.+++.+++.++++..+..+. .+.+|... .+ +-+.+..+| +++| +.||
T Consensus 21 i~~~i~~~t~l~kl~~~y~~~~gi~~~~------~rf~fdG~--~l------~~~~Tp~~l~medg--D~Id 76 (79)
T 3a4r_A 21 LEISLSPDSPLKVLMSHYEEAMGLSGHK------LSFFFDGT--KL------SGKELPADLGLESG--DLIE 76 (79)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCTTCC------CEEEETTE--EC------CSCCCHHHHTCCTT--CEEE
T ss_pred EEEEECCCChHHHHHHHHHHHhCCCccc------EEEEECCE--Ec------CCCCCHHHcCCCCC--CEEE
Confidence 4677888899999999999886332222 23344221 11 235788899 8888 6663
No 21
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=41.88 E-value=31 Score=24.11 Aligned_cols=55 Identities=13% Similarity=0.235 Sum_probs=34.2
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccccccee
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 338 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g~~~~~ 338 (376)
...+.++++.|+.+|-+.+.++..+..+...+.++++. +++ +++|+++ +++| ..|
T Consensus 15 ~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~--------L~d------~~tL~~~~i~~g--~~i 70 (77)
T 2bwf_A 15 KWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKI--------LKD------DQTVESYHIQDG--HSV 70 (77)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE--------CCT------TSBTGGGTCCTT--CEE
T ss_pred EEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeE--------cCC------CCCHHHcCCCCC--CEE
Confidence 34567778899999999998765333333333333222 221 3678888 8888 455
No 22
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=36.67 E-value=34 Score=31.53 Aligned_cols=40 Identities=20% Similarity=0.094 Sum_probs=27.0
Q ss_pred hhccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccCCc
Q 017136 53 ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 107 (376)
Q Consensus 53 ~~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~ 107 (376)
.+++.++|+||+.+. .++-...-..|. ++++|+| .||.|+
T Consensus 83 ~~ll~~aDVvIDFT~-p~a~~~~~~~~l-------------~~Gv~vV-iGTTG~ 122 (288)
T 3ijp_A 83 ESAFSNTEGILDFSQ-PQASVLYANYAA-------------QKSLIHI-IGTTGF 122 (288)
T ss_dssp HHHTTSCSEEEECSC-HHHHHHHHHHHH-------------HHTCEEE-ECCCCC
T ss_pred HHHhcCCCEEEEcCC-HHHHHHHHHHHH-------------HcCCCEE-EECCCC
Confidence 456789999999984 444333344554 6789998 455565
No 23
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=33.47 E-value=23 Score=25.96 Aligned_cols=62 Identities=21% Similarity=0.301 Sum_probs=37.7
Q ss_pred EE-eCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcc-hhHhhhccCCCchHHh-hcccccceeeeccccccc
Q 017136 271 IE-LDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPV-LEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTGQS 347 (376)
Q Consensus 271 ~~-~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~-~~~~~~~~l~~~l~~l-v~~g~~~~~~~~~~~~~~ 347 (376)
+. ++++.|+.+|.+.+.++. ++.. ...+++| .+|+. ++ ..+-.++|+++ +.+| ..| .+.
T Consensus 14 v~~l~~~~Tv~~Lk~~I~~~~--gi~~----~~qrL~~-~~p~k~l~---l~~~~~tL~~~gl~~g--~~l------~v~ 75 (86)
T 2kzr_A 14 LQGLSSRTRLRELQGQIAAIT--GIAP----GSQRILV-GYPPECLD---LSDRDITLGDLPIQSG--DML------IVE 75 (86)
T ss_dssp ECSCCTTCBHHHHHHHHHHHT--CCCT----TTCCCEE-SSCCCCCC---CCCSSCBTTTSSCCTT--CEE------ECC
T ss_pred eeecCCCCCHHHHHHHHHHHh--CCCc----cceEEEe-CCCCcccc---cCCCCCCHHHcCCCCC--CEE------EEE
Confidence 44 567889999999998765 3321 1123444 44432 11 01246789999 9999 677 666
Q ss_pred cCC
Q 017136 348 DKK 350 (376)
Q Consensus 348 d~~ 350 (376)
+..
T Consensus 76 ~~~ 78 (86)
T 2kzr_A 76 EDQ 78 (86)
T ss_dssp CCS
T ss_pred eCC
Confidence 554
No 24
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.14 E-value=61 Score=24.83 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=36.4
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccccccee
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 338 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g~~~~~ 338 (376)
..++++.++.|+.+|-+.+..+..+..+...+.++++.| ++ .++|++. +++| ..|
T Consensus 40 ~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L--------~D------~~TL~dygI~~g--stl 95 (100)
T 1uh6_A 40 KVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIF--------KD------HVSLGDYEIHDG--MNL 95 (100)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEEC--------CS------SCBHHHHTCCTT--EEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEEC--------CC------CCCHHHcCCCCC--CEE
Confidence 456788888999999999988764444444444443332 11 4678887 7777 445
No 25
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=31.63 E-value=93 Score=23.34 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=35.3
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccccccee
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 338 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g~~~~~ 338 (376)
...++++++.|+.+|-+.+.++..+..+...+.++.+. |+ .=.++|++. +++| ..|
T Consensus 23 ~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~--------L~-----D~~~tL~~ygI~~g--~~l 79 (102)
T 1v5o_A 23 TFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQL--------LT-----DDHCSLGSYGLKDG--DMV 79 (102)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEE--------EC-----CSSSBHHHHTCCTT--EEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEE--------CC-----CCcccHHHCCCCCC--CEE
Confidence 33577888899999999998776443344434333322 11 113678898 8888 455
No 26
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=30.03 E-value=63 Score=21.03 Aligned_cols=26 Identities=23% Similarity=0.092 Sum_probs=20.8
Q ss_pred CCCcHHHHHHHHHHhhCCCceEEEEEc
Q 017136 20 VGKPKAEVAAKRVMERVSGVNIVPHFC 46 (376)
Q Consensus 20 iG~~Ka~va~~~l~~~np~v~i~~~~~ 46 (376)
+|++ ++.|++.|.+-||++++..+..
T Consensus 14 VG~~-~~~A~~~I~~e~P~v~v~vl~~ 39 (45)
T 1hym_A 14 VGVG-GSVAKAIIERQNPNVKAVILEE 39 (45)
T ss_dssp TTSC-HHHHHHHHHHHCTTCEEEEEEC
T ss_pred cCCc-HHHHHHHHHHHCCCCeEEEecC
Confidence 4654 5778999999999999988754
No 27
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=29.91 E-value=50 Score=24.96 Aligned_cols=37 Identities=5% Similarity=0.112 Sum_probs=25.1
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCc
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGK 304 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~ 304 (376)
..++.+.+..||.|+++.-|+|+++.-+...+..+++
T Consensus 21 r~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k 57 (90)
T 2al3_A 21 RHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRT 57 (90)
T ss_dssp EEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCE
Confidence 4456667889999999999999855333344444443
No 28
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=29.87 E-value=72 Score=24.01 Aligned_cols=54 Identities=11% Similarity=0.144 Sum_probs=34.1
Q ss_pred EEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccccccee
Q 017136 269 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 338 (376)
Q Consensus 269 ~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g~~~~~ 338 (376)
..+.++++.|+.+|-+.+.++..+..+...+.++++.| ++ +++|+++ +++| ..|
T Consensus 37 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L--------~D------~~tL~~~gI~~g--~~I 91 (101)
T 2klc_A 37 EEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKIL--------KD------QDTLSQHGIHDG--LTV 91 (101)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEE--------CT------TCCTGGGTCCTT--CEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEEC--------CC------cCcHHHcCCCCC--CEE
Confidence 45677888999999999987764433344444433322 11 3678888 7788 445
No 29
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Probab=28.80 E-value=1e+02 Score=29.06 Aligned_cols=37 Identities=11% Similarity=0.109 Sum_probs=30.3
Q ss_pred hccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEecc
Q 017136 54 SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 104 (376)
Q Consensus 54 ~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~ 104 (376)
+.++++|+||.|+....++.+..... +.+..+||.+.
T Consensus 59 ~~~~~~Dvvf~a~~~~~s~~~a~~~~--------------~~G~~vID~Sa 95 (344)
T 3tz6_A 59 ADPSGLDIALFSAGSAMSKVQAPRFA--------------AAGVTVIDNSS 95 (344)
T ss_dssp SCCTTCSEEEECSCHHHHHHHHHHHH--------------HTTCEEEECSS
T ss_pred HHhccCCEEEECCChHHHHHHHHHHH--------------hCCCEEEECCC
Confidence 34688999999999999998888776 46788888765
No 30
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*
Probab=28.61 E-value=1e+02 Score=28.73 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=28.7
Q ss_pred hccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEecc
Q 017136 54 SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT 104 (376)
Q Consensus 54 ~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~ 104 (376)
+.++++|+||.|+....++.+..... +.+..+|+.+.
T Consensus 61 ~~~~~vDvVf~a~g~~~s~~~a~~~~--------------~~G~~vId~s~ 97 (336)
T 2r00_A 61 FDWSQVHIALFSAGGELSAKWAPIAA--------------EAGVVVIDNTS 97 (336)
T ss_dssp CCGGGCSEEEECSCHHHHHHHHHHHH--------------HTTCEEEECSS
T ss_pred HHhcCCCEEEECCCchHHHHHHHHHH--------------HcCCEEEEcCC
Confidence 34578999999999988888887665 45677787654
No 31
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=28.35 E-value=1.6e+02 Score=25.82 Aligned_cols=27 Identities=7% Similarity=0.075 Sum_probs=22.0
Q ss_pred hhccccCcEEEEccCCHHHHHHHHHHH
Q 017136 53 ISFYNDFNIIVLGLDSIEARSYINAVA 79 (376)
Q Consensus 53 ~~~~~~~DlVi~a~Dn~~~r~~in~~~ 79 (376)
++.+.++|+||.|+|+.+.-..+-..|
T Consensus 86 ~~dL~~adLVIaAT~d~~~N~~I~~~a 112 (223)
T 3dfz_A 86 EEDLLNVFFIVVATNDQAVNKFVKQHI 112 (223)
T ss_dssp GGGSSSCSEEEECCCCTHHHHHHHHHS
T ss_pred HhHhCCCCEEEECCCCHHHHHHHHHHH
Confidence 456788999999999987777777666
No 32
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=27.64 E-value=1.2e+02 Score=22.90 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=34.5
Q ss_pred EEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccccccee
Q 017136 269 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 338 (376)
Q Consensus 269 ~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g~~~~~ 338 (376)
..+.+.++.+|+.|++.++++. ++...+ .+.+|... +-+-+.+..+| +++| ++|
T Consensus 39 v~fkIk~~t~l~kLm~aY~~~~--g~~~~~----vrF~FDG~--------rI~~~~TP~dLdMEDg--D~I 93 (97)
T 2jxx_A 39 LEVSLSRDSPLKTLMSHYEEAM--GLSGRK----LSFFFDGT--------KLSGRELPADLGMESG--DLI 93 (97)
T ss_dssp EEEEEETTSCHHHHHHHHHHHT--TCSSSC----CEEEETTE--------ECCSCSCHHHHTCCTT--EEE
T ss_pred EEEEECCCChHHHHHHHHHHHH--CCCccc----EEEEECCE--------EcCCCCCHHHcCCCCC--CEE
Confidence 4677788899999999999876 443221 12333211 11335678888 8888 666
No 33
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=26.49 E-value=37 Score=30.93 Aligned_cols=40 Identities=15% Similarity=0.038 Sum_probs=26.7
Q ss_pred hhccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccCCc
Q 017136 53 ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 107 (376)
Q Consensus 53 ~~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~ 107 (376)
.+.+.++|+||+++..-.+...+ ..|. ++++|+|. ||.|+
T Consensus 68 ~~ll~~~DVVIDfT~p~a~~~~~-~~al-------------~~G~~vVi-gTTG~ 107 (272)
T 4f3y_A 68 ERVCAEADYLIDFTLPEGTLVHL-DAAL-------------RHDVKLVI-GTTGF 107 (272)
T ss_dssp HHHHHHCSEEEECSCHHHHHHHH-HHHH-------------HHTCEEEE-CCCCC
T ss_pred HHHhcCCCEEEEcCCHHHHHHHH-HHHH-------------HcCCCEEE-ECCCC
Confidence 45567899999998543344444 4554 67899885 66665
No 34
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=25.31 E-value=1.4e+02 Score=22.27 Aligned_cols=58 Identities=12% Similarity=0.003 Sum_probs=35.0
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCc---chhHhhhccCCCchHHh-hccccccee
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPP---VLEEMTRSNLSLPLYDL-MDKVAKDIL 338 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~---~~~~~~~~~l~~~l~~l-v~~g~~~~~ 338 (376)
...+.+.+++|+.+|-+.+..+.++..+... ++|...+. .+. .=.++|++. +++| ..|
T Consensus 29 ~~~~~v~~~~TV~~LK~kI~~~~GiP~~~Qr------L~~~~~g~~~~~L~-----~D~~tL~~Y~i~~g--sti 90 (95)
T 2kjr_A 29 AFEVKLAKDLTVAQLKTKLEILTGGCAGTMK------VQVFKGDTCVSTMD-----NNDAQLGYYANSDG--LRL 90 (95)
T ss_dssp EEEEEEETTCBHHHHHHHHHHHHCSCTTTEE------EEEEETTEEEEECC-----CTTSBHHHHCCSSS--CEE
T ss_pred EEEEEeCccCHHHHHHHHHHHHHCcCHHHeE------EEEecCCcccceeC-----CCCCCHhHCCcCCC--CEE
Confidence 4456777889999999999877533323333 33321100 111 124789999 9999 566
No 35
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.12 E-value=2.1e+02 Score=21.06 Aligned_cols=68 Identities=22% Similarity=0.139 Sum_probs=38.6
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecC-CcchhHhhhccCCCchHHh-hcccccceeeeccccc
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQA-PPVLEEMTRSNLSLPLYDL-MDKVAKDILHVTGVTG 345 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~-~~~~~~~~~~~l~~~l~~l-v~~g~~~~~~~~~~~~ 345 (376)
.....+..++|+++|-..+.....+......+ .|... .+... ..-++=.++|... +.+| ..| .
T Consensus 24 ~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L------~~~~~~~~~~~-~~L~~d~~~L~~y~i~~G--~~I------~ 88 (97)
T 1wjn_A 24 ILEKQLPDSMTVQKVKGLLSRLLKVPVSELLL------SYESSKMPGRE-IELENDLQPLQFYSVENG--DCL------L 88 (97)
T ss_dssp CEEEEEETTSBHHHHHHHHHTTTTCCTTTCEE------EEECTTSCSCE-EECCCSSSBSGGGTCCTT--CEE------E
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCChhHeEE------EEEcCCCCcee-eccCCCcccHhhcCCCCC--CEE------E
Confidence 44556777899999999998876332223322 23211 01000 0011335678888 8999 677 6
Q ss_pred cccCC
Q 017136 346 QSDKK 350 (376)
Q Consensus 346 ~~d~~ 350 (376)
|.|..
T Consensus 89 V~d~~ 93 (97)
T 1wjn_A 89 VRWSG 93 (97)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 66644
No 36
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=23.24 E-value=91 Score=29.13 Aligned_cols=37 Identities=16% Similarity=0.180 Sum_probs=28.6
Q ss_pred hhccccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEec
Q 017136 53 ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG 103 (376)
Q Consensus 53 ~~~~~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g 103 (376)
.++++++|+||+|+.... ...+-++|. +.++.++|..
T Consensus 72 ~~~~~~~DvVi~~~p~~~-~~~v~~~~~-------------~~g~~yvD~s 108 (365)
T 3abi_A 72 VEVMKEFELVIGALPGFL-GFKSIKAAI-------------KSKVDMVDVS 108 (365)
T ss_dssp HHHHTTCSEEEECCCGGG-HHHHHHHHH-------------HHTCEEEECC
T ss_pred HHHHhCCCEEEEecCCcc-cchHHHHHH-------------hcCcceEeee
Confidence 467899999999997653 345777886 6789999864
No 37
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=22.64 E-value=1.8e+02 Score=21.79 Aligned_cols=58 Identities=14% Similarity=-0.042 Sum_probs=36.0
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCc----chhHhhhccCCCchHHh-hccccccee
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPP----VLEEMTRSNLSLPLYDL-MDKVAKDIL 338 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~----~~~~~~~~~l~~~l~~l-v~~g~~~~~ 338 (376)
+..+.+.+++|+.+|-+.|+.+.++..+.. +++|....+ .|. .=.++|++. +++| ..|
T Consensus 28 ~~e~~v~~~~TV~~LK~kIe~~~Gip~~~Q------rLi~~g~~g~~~~~L~-----~D~~tL~~Y~I~~g--~~I 90 (97)
T 2kj6_A 28 SADARFSPQMSVEAVKEKLWKKCGTSVNSM------ALELYDDSGSKVAVLS-----DDSRPLGFFSPFDG--FRL 90 (97)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHCCCTTSE------EEEEECSSSCBCCCSS-----GGGSCHHHHCCCSC--CEE
T ss_pred EEEEEeCCCChHHHHHHHHHHHHCcCHHHe------EEEEecCCCcccceec-----CCcCCHHHCCCCCC--CEE
Confidence 456788899999999999987763322222 233332100 111 124689999 9999 566
No 38
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=22.52 E-value=88 Score=24.16 Aligned_cols=47 Identities=13% Similarity=0.280 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHHHHhhCCC--ceEEEEEccccCcchhccccCcEEEEccC
Q 017136 20 VGKPKAEVAAKRVMERVSG--VNIVPHFCRIEDKDISFYNDFNIIVLGLD 67 (376)
Q Consensus 20 iG~~Ka~va~~~l~~~np~--v~i~~~~~~i~~~~~~~~~~~DlVi~a~D 67 (376)
-|..=+..++.++++..+. +.++.....+.+... .+.++|+||.+.+
T Consensus 30 sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~-~~~~~DlIist~~ 78 (113)
T 1tvm_A 30 GAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET-YMDGVHLICTTAR 78 (113)
T ss_dssp SCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT-STTSCSEEEESSC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh-ccCCCCEEEECCc
Confidence 3777777778888777665 334444455554432 3578999999876
No 39
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=21.98 E-value=78 Score=22.35 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=31.1
Q ss_pred EEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccc
Q 017136 269 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 333 (376)
Q Consensus 269 ~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g 333 (376)
..+.++++.|+.+|.+.++++..+..+...+.++.+. ++ -+++|+++ ++++
T Consensus 16 ~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~--------L~------d~~tL~~~~i~~~ 67 (85)
T 3n3k_B 16 IILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ--------LE------DGRTLSDYNIHNH 67 (85)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEE--------CC------TTCBTTTTTCCTT
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeE--------CC------CCCCHHHCCCCCC
Confidence 3566778899999999998876443333333332221 21 13577777 7777
No 40
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=21.65 E-value=61 Score=29.53 Aligned_cols=41 Identities=12% Similarity=-0.015 Sum_probs=18.8
Q ss_pred cHHHHHHHHHHhhCCCceEEEEEccccCcchhccccCcEEEEcc
Q 017136 23 PKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGL 66 (376)
Q Consensus 23 ~Ka~va~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~a~ 66 (376)
.|++.+++.+....|.+++.++. .++ -.+.+.++|+||+|+
T Consensus 162 ~~a~~la~~~~~~~~~~~i~~~~--~~~-l~~~l~~~DiVInaT 202 (283)
T 3jyo_A 162 SRAQALADVINNAVGREAVVGVD--ARG-IEDVIAAADGVVNAT 202 (283)
T ss_dssp HHHHHHHHHHHHHHTSCCEEEEC--STT-HHHHHHHSSEEEECS
T ss_pred HHHHHHHHHHHhhcCCceEEEcC--HHH-HHHHHhcCCEEEECC
Confidence 35555555555555555444432 000 122344556666554
No 41
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=21.33 E-value=80 Score=21.59 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=31.6
Q ss_pred EEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccc
Q 017136 269 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 333 (376)
Q Consensus 269 ~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g 333 (376)
..+.++++.|+.+|-+.+.++..+..+...+.++++. ++ -+++|+++ +++|
T Consensus 13 ~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~--------L~------d~~tL~~~~i~~g 64 (76)
T 1ndd_A 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ--------MN------DEKTAADYKILGG 64 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE--------CC------TTSBGGGGTCCTT
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEE--------CC------CCCcHHHcCCCCC
Confidence 4567778899999999998775333333333333221 21 14678888 7777
No 42
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=21.26 E-value=76 Score=23.38 Aligned_cols=22 Identities=9% Similarity=0.175 Sum_probs=18.8
Q ss_pred EEEEeCCCCcHHHHHHHHHcCc
Q 017136 269 VLIELDTSVTLEKFINLLEEHP 290 (376)
Q Consensus 269 ~~~~~~~~~tl~~li~~l~~k~ 290 (376)
.++.+++++|+.+++..+|++.
T Consensus 22 l~f~I~~~t~v~kLi~ayc~~~ 43 (82)
T 3goe_A 22 LRLSIPVDFTVKDLIKRYCTEV 43 (82)
T ss_dssp EEEEEETTSBHHHHHHHHHHHH
T ss_pred eEEEecCCCCHHHHHHHHHHHc
Confidence 4667778899999999999876
No 43
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=21.17 E-value=92 Score=21.92 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=31.6
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccc
Q 017136 268 GVLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 333 (376)
Q Consensus 268 ~~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g 333 (376)
...+.++++.|+.+|-+.++++..+..+...+.+..+ .++ -+++|+++ ++++
T Consensus 15 ~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~--------~L~------d~~tL~~~~i~~~ 67 (85)
T 3mtn_B 15 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK--------QLE------DGRTLSDYNIQKW 67 (85)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTE--------ECC------TTSBTGGGTCCTT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCE--------ECC------CCCCHHHcCCCCC
Confidence 3456777889999999999877633333333332222 122 13677887 7777
No 44
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=20.80 E-value=83 Score=21.49 Aligned_cols=51 Identities=20% Similarity=0.397 Sum_probs=31.4
Q ss_pred EEEEeCCCCcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccc
Q 017136 269 VLIELDTSVTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKV 333 (376)
Q Consensus 269 ~~~~~~~~~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g 333 (376)
..+.++++.|+.+|-+.+.++..+..+...+.++++. +++ +++|+++ +++|
T Consensus 13 ~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~--------L~d------~~tL~~~~i~~g 64 (76)
T 3a9j_A 13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ--------LED------GRTLSDYNIQRE 64 (76)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE--------CCT------TCBTGGGTCCTT
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeE--------CCC------CCcHHHcCCCCC
Confidence 4567778899999999998765333333333333221 211 4678888 7777
No 45
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.67 E-value=2.2e+02 Score=20.52 Aligned_cols=54 Identities=15% Similarity=0.293 Sum_probs=31.9
Q ss_pred EEEeCCC-----CcHHHHHHHHHcCccccceeeEEEeCCcEEEecCCcchhHhhhccCCCchHHh-hccccccee
Q 017136 270 LIELDTS-----VTLEKFINLLEEHPKLQLAKASVTYRGKNLYMQAPPVLEEMTRSNLSLPLYDL-MDKVAKDIL 338 (376)
Q Consensus 270 ~~~~~~~-----~tl~~li~~l~~k~~~~l~~~~i~~~~~~lY~~~~~~~~~~~~~~l~~~l~~l-v~~g~~~~~ 338 (376)
.+.++++ .|+.+|-+.+.++..+..+...+.+.++. |+ .-.++|+++ +++| ..|
T Consensus 20 ~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~--------L~-----D~~~~L~~~~i~~g--~~i 79 (92)
T 1wxv_A 20 DLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKS--------LK-----EMETPLSALGIQDG--CRV 79 (92)
T ss_dssp EEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEE--------EC-----CSSSBHHHHTCCSS--EEE
T ss_pred EEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCee--------cC-----CCcccHHHCCCCCC--CEE
Confidence 4566664 89999999998765333333333333222 21 114578888 8888 455
No 46
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=20.16 E-value=2.1e+02 Score=25.30 Aligned_cols=58 Identities=9% Similarity=0.031 Sum_probs=35.8
Q ss_pred hCCCceEEEEEccccCcchhcc-ccCcEEEEccCCHHHHHHHHHHHHhccccccCCCcccCCCceEEEeccCCcc
Q 017136 35 RVSGVNIVPHFCRIEDKDISFY-NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFK 108 (376)
Q Consensus 35 ~np~v~i~~~~~~i~~~~~~~~-~~~DlVi~a~Dn~~~r~~in~~~~~~~~~~~~~~~~~~~~~pli~~g~~G~~ 108 (376)
..|+.++.+....-.+. .+++ .++|+|||++..-.....+ ..|. ++++|+|-+-+ |+.
T Consensus 22 ~~~~~elva~~d~~~dl-~~~~~~~~DvvIDfT~p~a~~~~~-~~a~-------------~~g~~~VigTT-G~~ 80 (245)
T 1p9l_A 22 AADDLTLSAELDAGDPL-SLLTDGNTEVVIDFTHPDVVMGNL-EFLI-------------DNGIHAVVGTT-GFT 80 (245)
T ss_dssp HCTTCEEEEEECTTCCT-HHHHHTTCCEEEECSCTTTHHHHH-HHHH-------------HTTCEEEECCC-CCC
T ss_pred hCCCCEEEEEEccCCCH-HHHhccCCcEEEEccChHHHHHHH-HHHH-------------HcCCCEEEcCC-CCC
Confidence 35788888766542221 2344 3799999999654444444 4554 67899877643 443
Done!