Query 017140
Match_columns 376
No_of_seqs 150 out of 1695
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 05:57:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01640 F_box_assoc_1 F-box 100.0 1.6E-30 3.6E-35 232.0 26.8 218 104-340 1-230 (230)
2 PF08268 FBA_3: F-box associat 99.7 3.4E-16 7.4E-21 126.5 14.8 115 202-322 1-118 (129)
3 PF07734 FBA_1: F-box associat 99.6 6.1E-14 1.3E-18 118.2 16.0 156 202-371 1-164 (164)
4 PLN03215 ascorbic acid mannose 99.3 1.4E-09 3E-14 101.4 21.3 294 10-348 3-356 (373)
5 PHA02713 hypothetical protein; 99.2 4.2E-10 9.1E-15 112.8 18.6 203 118-349 321-544 (557)
6 KOG4441 Proteins containing BT 99.1 2.5E-09 5.5E-14 107.0 18.1 217 102-346 326-554 (571)
7 PHA02790 Kelch-like protein; P 99.1 2.2E-08 4.9E-13 98.8 21.8 187 118-345 288-477 (480)
8 PHA03098 kelch-like protein; P 99.1 1.2E-08 2.6E-13 102.5 20.1 202 118-346 312-519 (534)
9 PHA02713 hypothetical protein; 99.1 1.4E-08 3E-13 101.9 20.1 201 118-346 273-497 (557)
10 KOG4441 Proteins containing BT 99.0 2.4E-08 5.2E-13 100.0 17.9 202 118-346 302-507 (571)
11 PLN02153 epithiospecifier prot 99.0 1.1E-07 2.3E-12 90.0 21.0 212 118-349 51-295 (341)
12 PLN02193 nitrile-specifier pro 98.8 5.6E-07 1.2E-11 88.7 21.4 207 118-349 194-421 (470)
13 PF12937 F-box-like: F-box-lik 98.8 1.6E-09 3.5E-14 70.8 1.2 43 11-53 1-43 (47)
14 TIGR03548 mutarot_permut cycli 98.8 2.4E-06 5.2E-11 80.1 22.7 111 174-290 87-202 (323)
15 PHA03098 kelch-like protein; P 98.7 5E-07 1.1E-11 90.8 17.3 200 118-346 265-472 (534)
16 PHA02790 Kelch-like protein; P 98.7 1.1E-06 2.4E-11 86.8 17.6 158 104-288 314-476 (480)
17 TIGR03547 muta_rot_YjhT mutatr 98.6 5.2E-06 1.1E-10 78.7 20.7 211 118-346 30-306 (346)
18 smart00256 FBOX A Receptor for 98.6 1.2E-08 2.7E-13 64.4 0.3 40 14-53 1-40 (41)
19 PF00646 F-box: F-box domain; 98.6 1.6E-08 3.5E-13 66.4 0.9 44 11-54 3-46 (48)
20 PLN02193 nitrile-specifier pro 98.5 1.3E-05 2.7E-10 79.2 19.9 158 175-348 193-361 (470)
21 PLN02153 epithiospecifier prot 98.5 2.3E-05 5E-10 74.1 20.2 157 118-290 102-292 (341)
22 PRK14131 N-acetylneuraminic ac 98.5 3.5E-05 7.5E-10 73.9 21.3 166 174-346 105-328 (376)
23 PRK14131 N-acetylneuraminic ac 98.4 7E-05 1.5E-09 71.8 21.1 159 175-344 189-374 (376)
24 TIGR03547 muta_rot_YjhT mutatr 98.2 0.00021 4.6E-09 67.6 19.0 135 175-323 168-328 (346)
25 TIGR03548 mutarot_permut cycli 98.2 0.0001 2.2E-09 69.1 16.7 145 186-346 52-202 (323)
26 KOG4693 Uncharacterized conser 98.1 0.0001 2.2E-09 64.6 13.1 221 103-350 29-288 (392)
27 KOG4693 Uncharacterized conser 97.6 0.0016 3.4E-08 57.4 13.1 183 118-323 106-309 (392)
28 KOG1230 Protein containing rep 97.6 0.0025 5.3E-08 59.5 14.7 219 118-352 99-354 (521)
29 KOG2120 SCF ubiquitin ligase, 97.6 2.3E-05 4.9E-10 70.2 0.9 43 9-51 96-138 (419)
30 KOG0281 Beta-TrCP (transducin 97.4 0.0026 5.7E-08 57.9 12.3 42 12-53 76-121 (499)
31 KOG0379 Kelch repeat-containin 97.3 0.019 4E-07 56.9 17.6 166 173-349 137-312 (482)
32 KOG0379 Kelch repeat-containin 97.0 0.045 9.9E-07 54.2 16.7 161 176-349 89-260 (482)
33 KOG1230 Protein containing rep 96.6 0.14 3E-06 48.2 15.7 155 174-339 97-276 (521)
34 KOG2997 F-box protein FBX9 [Ge 95.5 0.0031 6.7E-08 57.0 -0.3 44 11-54 107-155 (366)
35 PF13964 Kelch_6: Kelch motif 95.4 0.034 7.4E-07 36.3 4.4 41 199-239 4-44 (50)
36 PF02191 OLF: Olfactomedin-lik 95.0 2 4.4E-05 38.5 16.0 130 199-348 71-213 (250)
37 PF01344 Kelch_1: Kelch motif; 94.8 0.12 2.7E-06 32.9 5.8 40 200-239 5-44 (47)
38 smart00284 OLF Olfactomedin-li 94.0 4.4 9.5E-05 36.4 15.4 130 199-348 76-218 (255)
39 KOG4152 Host cell transcriptio 93.6 1.5 3.3E-05 42.6 12.4 211 118-352 58-316 (830)
40 PF02897 Peptidase_S9_N: Proly 93.5 7.7 0.00017 37.5 20.4 165 159-346 237-412 (414)
41 PF07646 Kelch_2: Kelch motif; 92.3 0.35 7.5E-06 31.3 4.6 42 199-240 4-47 (49)
42 KOG0274 Cdc4 and related F-box 91.3 7.8 0.00017 39.0 14.8 44 10-53 107-150 (537)
43 KOG3545 Olfactomedin and relat 90.7 7.7 0.00017 34.4 12.4 143 186-348 57-212 (249)
44 KOG0310 Conserved WD40 repeat- 89.4 9.1 0.0002 37.0 12.6 171 123-341 8-187 (487)
45 PF07250 Glyoxal_oxid_N: Glyox 88.0 14 0.0003 33.1 12.3 152 174-345 45-205 (243)
46 smart00612 Kelch Kelch domain. 87.8 0.63 1.4E-05 29.1 2.9 34 174-207 14-47 (47)
47 PF08450 SGL: SMP-30/Gluconola 87.4 20 0.00044 31.7 21.7 184 118-348 23-223 (246)
48 PF07762 DUF1618: Protein of u 86.8 5.6 0.00012 31.6 8.5 72 224-295 7-100 (131)
49 PF13360 PQQ_2: PQQ-like domai 86.3 22 0.00047 31.0 17.3 141 176-346 4-148 (238)
50 PF13418 Kelch_4: Galactose ox 85.7 1.2 2.6E-05 28.6 3.3 39 200-238 5-44 (49)
51 COG4257 Vgb Streptogramin lyas 85.0 22 0.00048 32.3 11.7 140 101-263 192-334 (353)
52 TIGR03074 PQQ_membr_DH membran 84.2 29 0.00062 36.6 14.2 32 199-237 187-220 (764)
53 COG4257 Vgb Streptogramin lyas 81.9 41 0.00088 30.6 15.8 221 101-348 65-315 (353)
54 PF13964 Kelch_6: Kelch motif 81.5 2.4 5.2E-05 27.3 3.5 23 173-195 26-48 (50)
55 KOG4341 F-box protein containi 80.5 0.54 1.2E-05 44.7 0.1 39 10-48 71-109 (483)
56 PF07646 Kelch_2: Kelch motif; 78.3 5.2 0.00011 25.6 4.3 38 252-290 6-46 (49)
57 TIGR01640 F_box_assoc_1 F-box 78.2 46 0.001 29.1 12.6 124 204-348 3-137 (230)
58 PF01344 Kelch_1: Kelch motif; 77.4 13 0.00028 23.2 6.0 40 250-290 4-44 (47)
59 PRK11138 outer membrane biogen 77.1 57 0.0012 31.3 13.0 113 201-345 64-185 (394)
60 PF13415 Kelch_3: Galactose ox 75.8 3.8 8.3E-05 26.2 3.1 27 173-199 17-43 (49)
61 cd01207 Ena-Vasp Enabled-VASP- 74.2 9.3 0.0002 29.5 5.3 41 118-168 10-51 (111)
62 PF13418 Kelch_4: Galactose ox 73.9 4.6 9.9E-05 25.7 3.1 34 161-194 14-48 (49)
63 PF13415 Kelch_3: Galactose ox 73.1 5.9 0.00013 25.3 3.5 37 206-242 1-39 (49)
64 cd01206 Homer Homer type EVH1 72.8 9.2 0.0002 29.3 4.8 39 118-168 12-51 (111)
65 PLN02772 guanylate kinase 72.0 21 0.00045 34.3 8.1 77 199-280 27-107 (398)
66 PF07893 DUF1668: Protein of u 71.2 94 0.002 29.3 15.6 112 117-245 86-224 (342)
67 smart00612 Kelch Kelch domain. 70.3 10 0.00022 23.3 4.1 20 223-242 15-35 (47)
68 TIGR03075 PQQ_enz_alc_DH PQQ-d 69.1 1.1E+02 0.0024 30.9 13.1 124 200-345 63-196 (527)
69 PF10282 Lactonase: Lactonase, 67.2 1.1E+02 0.0024 28.7 14.1 174 151-348 90-287 (345)
70 TIGR03300 assembly_YfgL outer 62.8 1.4E+02 0.003 28.2 12.5 109 200-344 59-169 (377)
71 PRK11138 outer membrane biogen 60.6 1.6E+02 0.0034 28.2 13.8 138 176-345 80-230 (394)
72 COG1520 FOG: WD40-like repeat 59.9 1.4E+02 0.003 28.3 11.5 112 202-346 64-179 (370)
73 KOG2437 Muskelin [Signal trans 58.7 15 0.00033 36.0 4.5 134 199-345 263-419 (723)
74 PF13013 F-box-like_2: F-box-l 58.6 4 8.7E-05 31.5 0.5 29 11-39 22-50 (109)
75 PF13570 PQQ_3: PQQ-like domai 57.0 19 0.00041 21.7 3.4 26 200-232 15-40 (40)
76 PF01011 PQQ: PQQ enzyme repea 56.8 27 0.00058 20.9 3.9 19 328-346 8-26 (38)
77 PF07893 DUF1668: Protein of u 55.2 1.9E+02 0.0041 27.3 17.1 126 162-295 77-221 (342)
78 COG3055 Uncharacterized protei 53.6 62 0.0014 30.5 7.4 87 175-265 58-154 (381)
79 KOG4152 Host cell transcriptio 51.6 2.6E+02 0.0057 27.9 12.3 138 118-267 172-342 (830)
80 PF08450 SGL: SMP-30/Gluconola 51.5 1.7E+02 0.0036 25.7 14.8 115 203-345 6-129 (246)
81 KOG2502 Tub family proteins [G 49.6 9.9 0.00021 35.4 1.6 39 9-47 43-89 (355)
82 KOG3926 F-box proteins [Amino 49.0 8.5 0.00018 34.5 1.1 45 8-52 199-244 (332)
83 smart00564 PQQ beta-propeller 47.9 50 0.0011 18.5 4.6 26 203-235 3-28 (33)
84 KOG0293 WD40 repeat-containing 47.9 2.7E+02 0.0058 27.0 10.8 71 254-344 403-476 (519)
85 KOG0291 WD40-repeat-containing 47.1 3.6E+02 0.0079 28.3 13.2 50 224-279 415-466 (893)
86 PF13854 Kelch_5: Kelch motif 44.2 60 0.0013 19.8 4.2 36 197-232 5-41 (42)
87 COG3386 Gluconolactonase [Carb 43.2 2.7E+02 0.0058 25.9 10.1 48 207-264 37-84 (307)
88 KOG2437 Muskelin [Signal trans 39.9 53 0.0012 32.4 4.9 116 151-266 264-394 (723)
89 PF08268 FBA_3: F-box associat 38.0 72 0.0016 25.0 4.8 34 315-348 4-38 (129)
90 KOG0301 Phospholipase A2-activ 37.9 4.8E+02 0.01 27.0 11.5 49 224-279 201-249 (745)
91 COG3055 Uncharacterized protei 37.4 97 0.0021 29.2 6.0 45 174-218 317-361 (381)
92 PF10282 Lactonase: Lactonase, 36.4 3.6E+02 0.0079 25.2 21.1 172 151-346 147-332 (345)
93 KOG0279 G protein beta subunit 36.4 3.4E+02 0.0074 24.8 12.2 136 118-280 128-263 (315)
94 PF13360 PQQ_2: PQQ-like domai 36.3 2.8E+02 0.006 23.8 20.2 189 107-345 35-237 (238)
95 COG2706 3-carboxymuconate cycl 34.3 4E+02 0.0087 25.1 22.1 113 223-348 167-286 (346)
96 KOG0316 Conserved WD40 repeat- 32.7 3.6E+02 0.0079 24.1 13.2 130 114-279 37-173 (307)
97 KOG0289 mRNA splicing factor [ 32.5 4.8E+02 0.01 25.4 11.5 116 203-347 355-471 (506)
98 PRK04792 tolB translocation pr 32.2 4.9E+02 0.011 25.4 21.4 191 117-347 242-434 (448)
99 PF06058 DCP1: Dcp1-like decap 31.2 85 0.0018 24.7 4.1 23 329-351 28-50 (122)
100 PLN02772 guanylate kinase 31.0 3.8E+02 0.0083 25.9 9.1 42 251-293 28-70 (398)
101 KOG0289 mRNA splicing factor [ 28.9 5.6E+02 0.012 25.0 10.0 102 174-290 368-470 (506)
102 KOG2055 WD40 repeat protein [G 28.9 5.7E+02 0.012 25.2 14.4 115 204-345 266-381 (514)
103 PF03088 Str_synth: Strictosid 28.4 69 0.0015 23.7 3.0 19 328-346 35-53 (89)
104 KOG0265 U5 snRNP-specific prot 28.3 3.5E+02 0.0076 25.0 7.8 66 257-342 58-124 (338)
105 PF14583 Pectate_lyase22: Olig 28.3 3.1E+02 0.0067 26.4 7.9 109 223-345 168-279 (386)
106 PF14157 YmzC: YmzC-like prote 27.9 80 0.0017 21.5 2.9 18 328-345 39-56 (63)
107 PRK10115 protease 2; Provision 27.4 7.4E+02 0.016 26.0 20.1 123 204-347 277-403 (686)
108 PRK04792 tolB translocation pr 27.2 6E+02 0.013 24.9 18.5 148 174-346 241-390 (448)
109 PF03022 MRJP: Major royal jel 26.6 5E+02 0.011 23.7 9.8 83 118-208 35-122 (287)
110 cd00837 EVH1 EVH1 (Enabled, Va 26.5 2.4E+02 0.0051 21.3 5.8 40 118-169 10-49 (104)
111 KOG0647 mRNA export protein (c 26.0 5.1E+02 0.011 24.0 8.4 94 238-351 20-115 (347)
112 PF12217 End_beta_propel: Cata 25.6 4.8E+02 0.01 23.7 8.0 61 203-266 197-258 (367)
113 KOG1963 WD40 repeat protein [G 25.0 6.3E+02 0.014 26.8 9.9 101 224-344 433-545 (792)
114 PRK00178 tolB translocation pr 25.0 6.2E+02 0.014 24.3 21.3 190 118-346 224-414 (430)
115 TIGR03300 assembly_YfgL outer 24.8 5.8E+02 0.013 23.9 15.2 135 176-344 76-214 (377)
116 COG4946 Uncharacterized protei 24.2 7.2E+02 0.016 24.7 10.9 149 105-279 274-429 (668)
117 COG2706 3-carboxymuconate cycl 22.8 6.5E+02 0.014 23.7 17.7 175 151-347 148-332 (346)
118 PLN00181 protein SPA1-RELATED; 22.1 9.6E+02 0.021 25.4 20.4 133 114-280 553-691 (793)
119 PF15525 DUF4652: Domain of un 22.0 5.1E+02 0.011 22.2 7.9 20 327-346 137-156 (200)
120 PRK04043 tolB translocation pr 21.5 7.5E+02 0.016 24.0 13.2 122 206-350 198-321 (419)
121 TIGR03032 conserved hypothetic 21.4 3.5E+02 0.0076 25.3 6.6 55 199-266 205-260 (335)
122 cd00216 PQQ_DH Dehydrogenases 21.1 6.7E+02 0.014 24.9 9.4 80 176-265 367-456 (488)
123 PF07250 Glyoxal_oxid_N: Glyox 20.1 4E+02 0.0086 23.8 6.7 87 224-323 47-135 (243)
No 1
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=100.00 E-value=1.6e-30 Score=231.95 Aligned_cols=218 Identities=25% Similarity=0.485 Sum_probs=155.7
Q ss_pred ccceeeEE-EecCCeeEEEEcCCCCceeeCCCceeecCCCCCCc---cce-eEEEeEeCCCCcEEEEEEeec--CCCCCc
Q 017140 104 TRSVNGII-LMDFGLYATLCNPSTRQTFNTPFVCSLTSPSVNST---YFC-VNSFGFDPVSKKYKVLNSWAI--PGRDPE 176 (376)
Q Consensus 104 ~~s~~Gll-~~~~~~~~~V~NP~T~~~~~~p~~~~L~~P~~~~~---~~~-~~~l~~d~~~~~ykvv~~~~~--~~~~~~ 176 (376)
+++||||| +.... .++||||+||+++ .| |++... ... ..+||||+.+++||||++... ......
T Consensus 1 ~~sCnGLlc~~~~~-~~~V~NP~T~~~~------~L--P~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~ 71 (230)
T TIGR01640 1 VVPCDGLICFSYGK-RLVVWNPSTGQSR------WL--PTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSE 71 (230)
T ss_pred CcccceEEEEecCC-cEEEECCCCCCEE------ec--CCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCcc
Confidence 47999999 65555 8999999999999 66 544321 112 389999999999999995332 123578
Q ss_pred EEEEEeCCCceEECcCCCCccC-CCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceE-EEecChhhhccCCccceE
Q 017140 177 YRIFELGTNSWRPLKGGPNYYP-QRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFR-VIEIPAKALARRSESELI 254 (376)
Q Consensus 177 ~~vyss~~~~W~~~~~~~~~~~-~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~~~~~~~~~l~ 254 (376)
++||++++++||.++..++... ...+|++||.+||++....... ...|++||+++|+|+ .+++|...........|+
T Consensus 72 ~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~-~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~ 150 (230)
T TIGR01640 72 HQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNP-DYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLI 150 (230)
T ss_pred EEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCC-cEEEEEEEcccceEeeeeecCccccccccceEEE
Confidence 9999999999999885443322 3349999999999997543211 137999999999999 599997653222246799
Q ss_pred EeCCeEEEEEccCCCCCeEEEEEeccCCCCCeEEEE-EEcCCCcccccccccccceeEEee--cCCeEEEeecccCCCcE
Q 017140 255 VYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIK-VFLPEDYGEEILEEDIDYFVDCIG--RNNELLLVPQTVSDSVY 331 (376)
Q Consensus 255 ~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~-~~lp~~~~~~~~~~~~~~~~~~~~--~~g~ill~~~~~~~~~~ 331 (376)
+++|+|+++.... ....++||+|++++++.|++.. +.+|. +.. +.. . ..+.+ ++|+|++.... .....
T Consensus 151 ~~~G~L~~v~~~~-~~~~~~IWvl~d~~~~~W~k~~~i~~~~-~~~-~~~----~-~~~~~~~~~g~I~~~~~~-~~~~~ 221 (230)
T TIGR01640 151 NYKGKLAVLKQKK-DTNNFDLWVLNDAGKQEWSKLFTVPIPP-LPD-LVD----D-NFLSGFTDKGEIVLCCED-ENPFY 221 (230)
T ss_pred EECCEEEEEEecC-CCCcEEEEEECCCCCCceeEEEEEcCcc-hhh-hhh----h-eeEeEEeeCCEEEEEeCC-CCceE
Confidence 9999999998732 2356999999998877899863 43332 111 222 1 22343 68999998642 12345
Q ss_pred EEEEeCCCC
Q 017140 332 VIHYDVVNR 340 (376)
Q Consensus 332 l~~ydl~t~ 340 (376)
++.||++++
T Consensus 222 ~~~y~~~~~ 230 (230)
T TIGR01640 222 IFYYNVGEN 230 (230)
T ss_pred EEEEeccCC
Confidence 999999885
No 2
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.71 E-value=3.4e-16 Score=126.47 Aligned_cols=115 Identities=23% Similarity=0.617 Sum_probs=86.1
Q ss_pred ceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEecChhhhccCCccceEEeCCeEEEEEccCCC-CCeEEEEEecc
Q 017140 202 SVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLE-DATMTIWVLDE 280 (376)
Q Consensus 202 ~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~-~~~l~IW~l~~ 280 (376)
|+++||.+||++...+.. ...|++||+++|+|+.|++|...........|++++|+|+++...... ...++||+|+|
T Consensus 1 gicinGvly~~a~~~~~~--~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD 78 (129)
T PF08268_consen 1 GICINGVLYWLAWSEDSD--NNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED 78 (129)
T ss_pred CEEECcEEEeEEEECCCC--CcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence 689999999999873222 259999999999999999992222223478899999999999874322 35799999999
Q ss_pred CCCCCeEEEEEEcCCCcccccccccccceeEEee--cCCeEEEe
Q 017140 281 NDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIG--RNNELLLV 322 (376)
Q Consensus 281 ~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~--~~g~ill~ 322 (376)
+++++|++..+.+|..... .... .. +.+.+ .+|+|++.
T Consensus 79 ~~k~~Wsk~~~~lp~~~~~-~~~~--~~-~~~~g~~~~Geiv~~ 118 (129)
T PF08268_consen 79 YEKQEWSKKHIVLPPSWQH-FVHD--CD-FSFVGVTDTGEIVFA 118 (129)
T ss_pred cccceEEEEEEECChHHhc-ccCC--cE-EEEEEEcCCCEEEEE
Confidence 9888999987778754322 2111 22 55666 78999997
No 3
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=99.59 E-value=6.1e-14 Score=118.16 Aligned_cols=156 Identities=15% Similarity=0.232 Sum_probs=97.2
Q ss_pred ceEECceEEEEEecCCCCCCccEEEEEEcCCcce-EEEecChhhhccCCccceE-EeCCeEEEEEccCCCCCeEEEEEec
Q 017140 202 SVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESF-RVIEIPAKALARRSESELI-VYSGRPAIADHLLLEDATMTIWVLD 279 (376)
Q Consensus 202 ~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~-~~i~lP~~~~~~~~~~~l~-~~~G~L~l~~~~~~~~~~l~IW~l~ 279 (376)
+|++||++||++........ ..|++||+++|+| ..+++|...........|. ..+|+||++... .....++||+|+
T Consensus 1 gV~vnG~~hW~~~~~~~~~~-~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~-~~~~~~~IWvm~ 78 (164)
T PF07734_consen 1 GVFVNGALHWLAYDENNDEK-DFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQC-DETSKIEIWVMK 78 (164)
T ss_pred CEEECCEEEeeEEecCCCCc-eEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEec-cCCccEEEEEEe
Confidence 69999999999987653221 2799999999999 8899998766333355664 447899999752 245569999999
Q ss_pred cCC--CCCeEEE-EEEcCCCcccccccccccceeEEeecCCeEEEeecccCCC---cEEEEEeCCCCcEEEEEEeccCCC
Q 017140 280 END--GDYWVQI-KVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDS---VYVIHYDVVNRSMRRAEIFGLPED 353 (376)
Q Consensus 280 ~~~--~~~W~~~-~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~---~~l~~ydl~t~~~~~v~~~~~~~~ 353 (376)
+++ .++|+|. .+.++.... .... +.....++..++++++........ ..++.|+ +.+..+++.+.....
T Consensus 79 ~~~~~~~SWtK~~~i~~~~~~~--~~~~-~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~- 153 (164)
T PF07734_consen 79 KYGYGKESWTKLFTIDLPPLPS--LFFH-FRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSS- 153 (164)
T ss_pred eeccCcceEEEEEEEecCCCCC--cccc-cccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCC-
Confidence 764 4699998 355432111 1100 000011233555666654322221 5677887 777788887632111
Q ss_pred cCCCCcceeEEecCcccc
Q 017140 354 RFSDLSSNTFRVINYEEN 371 (376)
Q Consensus 354 ~~~~~~~~~~~~~~~~~s 371 (376)
-+..+..||||
T Consensus 154 -------~~~~~~~YvpS 164 (164)
T PF07734_consen 154 -------CWPSICNYVPS 164 (164)
T ss_pred -------CCCCEEEECCC
Confidence 13445688887
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=99.25 E-value=1.4e-09 Score=101.41 Aligned_cols=294 Identities=14% Similarity=0.154 Sum_probs=147.4
Q ss_pred CCCCCCHHHHHHHhcCCC-ccccceeeeccccchhhccChhhHhhhhhccCccCceEEEEeccCCCCceEEEecCCCCCC
Q 017140 10 SSKPIPSEIIYDILTKLP-IKSLMRFRCLSKLCSSYITAPSFAELHALNFPIKTVGLLVTCPARLQTAQHFFSVDFDGGL 88 (376)
Q Consensus 10 ~~~~LP~Dll~~IL~rLP-~~~l~r~r~VCK~W~~li~s~~F~~~h~~~~~~~~p~ll~~~~~~~~~~~~~~~~~~~~~~ 88 (376)
.+++||+|||..|..||| ..++.|||+|||+||+.+....= ..+ +++ +|++++-..+.. ... .+ +.....
T Consensus 3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~-~~~---~~~-~~~~~~~~~~~~-~~~--~~-~~~~~~ 73 (373)
T PLN03215 3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGK-KNP---FRT-RPLILFNPINPS-ETL--TD-DRSYIS 73 (373)
T ss_pred ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccc-cCC---ccc-ccccccCcccCC-CCc--cc-cccccc
Confidence 478999999999999998 88999999999999998764210 010 111 233332110000 000 00 000000
Q ss_pred -CcccccCCCC-Ccc-ccccceeeEE--EecC--CeeEEEEcCCCCceeeCCCceeecCCCCCCc---cce--e---EEE
Q 017140 89 -AVPLLTIPPR-FSR-YTTRSVNGII--LMDF--GLYATLCNPSTRQTFNTPFVCSLTSPSVNST---YFC--V---NSF 153 (376)
Q Consensus 89 -~~~~l~~p~~-~~~-~~~~s~~Gll--~~~~--~~~~~V~NP~T~~~~~~p~~~~L~~P~~~~~---~~~--~---~~l 153 (376)
+...+ .+.. .+. ...++..|+| ...+ +.++.+.||+++... .+ |+.... ... + +.+
T Consensus 74 ~~~~~l-s~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~------~~--~~~~lnll~f~v~ei~~~y~l 144 (373)
T PLN03215 74 RPGAFL-SRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPL------RH--SSESVDLLEFTVSEIREAYQV 144 (373)
T ss_pred ccccee-eeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCcc------CC--CCccceeeeeEEEEccceEEE
Confidence 00000 0000 011 1113567877 3222 238999999999977 44 432110 000 0 111
Q ss_pred -eEeCC---CCcE----------------EEEEEeecCCCCCcEEEEEeCCCceEECcCCCCccCCCcceEECceEEEEE
Q 017140 154 -GFDPV---SKKY----------------KVLNSWAIPGRDPEYRIFELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRS 213 (376)
Q Consensus 154 -~~d~~---~~~y----------------kvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~v~~~G~lyw~~ 213 (376)
+.+.. ...| -|+++... ...... +.++|..++... ......++++|++|-+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~----g~l~~w--~~~~Wt~l~~~~--~~~~DIi~~kGkfYAvD 216 (373)
T PLN03215 145 LDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRD----GKINYW--DGNVLKALKQMG--YHFSDIIVHKGQTYALD 216 (373)
T ss_pred EecccccccccceeEEEEEEeecCCCcceEEEEEeec----CcEeee--cCCeeeEccCCC--ceeeEEEEECCEEEEEc
Confidence 11100 0012 22222111 011111 247888886422 22567799999999984
Q ss_pred ecCCCCCCccEEEEEEcCCcceEEEecCh--hhhc--cCCccceEEeCCeEEEEEccCC--------------CCCeEEE
Q 017140 214 WVSTHKNGRTVLIAFDLHEESFRVIEIPA--KALA--RRSESELIVYSGRPAIADHLLL--------------EDATMTI 275 (376)
Q Consensus 214 ~~~~~~~~~~~il~fD~~~~~~~~i~lP~--~~~~--~~~~~~l~~~~G~L~l~~~~~~--------------~~~~l~I 275 (376)
..+ .+.++|.+- ..+.+..+. .... +.....|+|+.|.|+++..... ....++|
T Consensus 217 ~~G-------~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~V 288 (373)
T PLN03215 217 SIG-------IVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKV 288 (373)
T ss_pred CCC-------eEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEE
Confidence 432 577777432 122221110 0010 1124668999999999876311 1246888
Q ss_pred EEeccCCCCCeEEEEEEcCCCcccccccccccceeEEe-----e-cCCeEEEeecccCCCcEEEEEeCCCCcEEEEEEe
Q 017140 276 WVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCI-----G-RNNELLLVPQTVSDSVYVIHYDVVNRSMRRAEIF 348 (376)
Q Consensus 276 W~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~-----~-~~g~ill~~~~~~~~~~l~~ydl~t~~~~~v~~~ 348 (376)
+.++ .+.+.|+++. .|....- +++.+ .. +.+. + ..+-|+|. .+....+||++.++..-+...
T Consensus 289 fklD-~~~~~WveV~-sLgd~aL--FlG~~-~s-~sv~a~e~pG~k~NcIYFt-----dd~~~~v~~~~dg~~~~~~~~ 356 (373)
T PLN03215 289 YKFD-DELAKWMEVK-TLGDNAF--VMATD-TC-FSVLAHEFYGCLPNSIYFT-----EDTMPKVFKLDNGNGSSIETT 356 (373)
T ss_pred EEEc-CCCCcEEEec-ccCCeEE--EEECC-cc-EEEecCCCCCccCCEEEEE-----CCCcceEEECCCCCccceEee
Confidence 9886 3456899985 4432100 22210 11 1111 1 23345554 455677999999998777654
No 5
>PHA02713 hypothetical protein; Provisional
Probab=99.24 E-value=4.2e-10 Score=112.77 Aligned_cols=203 Identities=10% Similarity=0.133 Sum_probs=130.6
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEE-EeecCCCCCcEEEEEeCCCceEECcCCCCc
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLN-SWAIPGRDPEYRIFELGTNSWRPLKGGPNY 196 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~-~~~~~~~~~~~~vyss~~~~W~~~~~~~~~ 196 (376)
.+..+||.+++|. .+ |+++..+........+ +...|++ ... ......+++|++.+++|..++.++..
T Consensus 321 ~v~~Yd~~~n~W~------~~--~~m~~~R~~~~~~~~~---g~IYviGG~~~-~~~~~sve~Ydp~~~~W~~~~~mp~~ 388 (557)
T PHA02713 321 KVYKINIENKIHV------EL--PPMIKNRCRFSLAVID---DTIYAIGGQNG-TNVERTIECYTMGDDKWKMLPDMPIA 388 (557)
T ss_pred eEEEEECCCCeEe------eC--CCCcchhhceeEEEEC---CEEEEECCcCC-CCCCceEEEEECCCCeEEECCCCCcc
Confidence 5889999999999 77 7765443222222222 2233333 211 11345799999999999999887766
Q ss_pred cCCCcceEECceEEEEEecCCCC-----------------CCccEEEEEEcCCcceEEEe-cChhhhccCCccceEEeCC
Q 017140 197 YPQRESVCVDGFVYFRSWVSTHK-----------------NGRTVLIAFDLHEESFRVIE-IPAKALARRSESELIVYSG 258 (376)
Q Consensus 197 ~~~~~~v~~~G~lyw~~~~~~~~-----------------~~~~~il~fD~~~~~~~~i~-lP~~~~~~~~~~~l~~~~G 258 (376)
.....++.++|++|.+++..... .....+.+||+.+++|..++ +|.... ...+++.+|
T Consensus 389 r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~----~~~~~~~~~ 464 (557)
T PHA02713 389 LSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI----RPGVVSHKD 464 (557)
T ss_pred cccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc----cCcEEEECC
Confidence 65667789999999998754210 00136999999999999873 444332 456789999
Q ss_pred eEEEEEccCCCCCeE-EEEEeccCCC-CCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccCCCcEEEEEe
Q 017140 259 RPAIADHLLLEDATM-TIWVLDENDG-DYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYD 336 (376)
Q Consensus 259 ~L~l~~~~~~~~~~l-~IW~l~~~~~-~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~l~~yd 336 (376)
+||++...+...... .+... |.+. +.|+.+. .+|... .. ...+..+|.|+++.... ....+-+||
T Consensus 465 ~IYv~GG~~~~~~~~~~ve~Y-dp~~~~~W~~~~-~m~~~r----~~------~~~~~~~~~iyv~Gg~~-~~~~~e~yd 531 (557)
T PHA02713 465 DIYVVCDIKDEKNVKTCIFRY-NTNTYNGWELIT-TTESRL----SA------LHTILHDNTIMMLHCYE-SYMLQDTFN 531 (557)
T ss_pred EEEEEeCCCCCCccceeEEEe-cCCCCCCeeEcc-ccCccc----cc------ceeEEECCEEEEEeeec-ceeehhhcC
Confidence 999998743112112 23333 3445 5799875 566431 11 11222478888875321 123688999
Q ss_pred CCCCcEEEEEEec
Q 017140 337 VVNRSMRRAEIFG 349 (376)
Q Consensus 337 l~t~~~~~v~~~~ 349 (376)
++|++|..+.-+.
T Consensus 532 ~~~~~W~~~~~~~ 544 (557)
T PHA02713 532 VYTYEWNHICHQH 544 (557)
T ss_pred cccccccchhhhc
Confidence 9999999986553
No 6
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.13 E-value=2.5e-09 Score=106.97 Aligned_cols=217 Identities=12% Similarity=0.106 Sum_probs=142.3
Q ss_pred ccccceeeEE--Ee-cC-----CeeEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEE-EeecCC
Q 017140 102 YTTRSVNGII--LM-DF-----GLYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLN-SWAIPG 172 (376)
Q Consensus 102 ~~~~s~~Gll--~~-~~-----~~~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~-~~~~~~ 172 (376)
..++..+|.| .. .+ ...+..+||.+++|. .+ |++...+. .++.....+.-.+|+ ... ..
T Consensus 326 ~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~------~~--a~M~~~R~---~~~v~~l~g~iYavGG~dg-~~ 393 (571)
T KOG4441|consen 326 VGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWT------PV--APMNTKRS---DFGVAVLDGKLYAVGGFDG-EK 393 (571)
T ss_pred ccEEEECCEEEEEccccCCCcccceEEEecCCCCcee------cc--CCccCccc---cceeEEECCEEEEEecccc-cc
Confidence 3455667777 21 11 147899999999999 88 88866542 233222233334444 321 22
Q ss_pred CCCcEEEEEeCCCceEECcCCCCccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEE-ecChhhhccCCcc
Q 017140 173 RDPEYRIFELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVI-EIPAKALARRSES 251 (376)
Q Consensus 173 ~~~~~~vyss~~~~W~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~ 251 (376)
....+|.|+..++.|..++.++........+.++|.+|-+++......--..+.+||+.+.+|..+ +++.... ..
T Consensus 394 ~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~----~~ 469 (571)
T KOG4441|consen 394 SLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS----GF 469 (571)
T ss_pred ccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc----cc
Confidence 466899999999999999988875557788999999999998664431114899999999999998 4555443 45
Q ss_pred ceEEeCCeEEEEEccCCCCCeEEEEEeccCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeeccc--CCC
Q 017140 252 ELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTV--SDS 329 (376)
Q Consensus 252 ~l~~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~--~~~ 329 (376)
.+.+++|+||++...+. ...++-=..-|.....|+.+. .++..-. . ..++..+|.++++.... ...
T Consensus 470 g~a~~~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~-~m~~~rs---------~-~g~~~~~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 470 GVAVLNGKIYVVGGFDG-TSALSSVERYDPETNQWTMVA-PMTSPRS---------A-VGVVVLGGKLYAVGGFDGNNNL 537 (571)
T ss_pred eEEEECCEEEEECCccC-CCccceEEEEcCCCCceeEcc-cCccccc---------c-ccEEEECCEEEEEecccCcccc
Confidence 58899999999988543 222222122244466899984 3332211 1 11122466677765321 234
Q ss_pred cEEEEEeCCCCcEEEEE
Q 017140 330 VYVIHYDVVNRSMRRAE 346 (376)
Q Consensus 330 ~~l~~ydl~t~~~~~v~ 346 (376)
..+-+||+++++|+...
T Consensus 538 ~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 538 NTVECYDPETDTWTEVT 554 (571)
T ss_pred ceeEEcCCCCCceeeCC
Confidence 46899999999999874
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=99.08 E-value=2.2e-08 Score=98.81 Aligned_cols=187 Identities=14% Similarity=0.110 Sum_probs=120.8
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEEEeecCCCCCcEEEEEeCCCceEECcCCCCcc
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTNSWRPLKGGPNYY 197 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~ 197 (376)
.+..+||.+++|. .+ |+++..+....+...+ +...+++ ... ....++.|+..+++|..++.++..+
T Consensus 288 ~v~~Ydp~~~~W~------~~--~~m~~~r~~~~~v~~~---~~iYviG--G~~-~~~sve~ydp~~n~W~~~~~l~~~r 353 (480)
T PHA02790 288 NAIAVNYISNNWI------PI--PPMNSPRLYASGVPAN---NKLYVVG--GLP-NPTSVERWFHGDAAWVNMPSLLKPR 353 (480)
T ss_pred eEEEEECCCCEEE------EC--CCCCchhhcceEEEEC---CEEEEEC--CcC-CCCceEEEECCCCeEEECCCCCCCC
Confidence 5778999999999 77 6665433222222222 2233333 211 1356899999999999998877555
Q ss_pred CCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEe-cChhhhccCCccceEEeCCeEEEEEccCCCCCeEEEE
Q 017140 198 PQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIE-IPAKALARRSESELIVYSGRPAIADHLLLEDATMTIW 276 (376)
Q Consensus 198 ~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~-lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW 276 (376)
....++.++|++|.+++..... ..+..||+++++|+.++ +|.... ....++.+|+|+++.. . .+++
T Consensus 354 ~~~~~~~~~g~IYviGG~~~~~---~~ve~ydp~~~~W~~~~~m~~~r~----~~~~~~~~~~IYv~GG---~---~e~y 420 (480)
T PHA02790 354 CNPAVASINNVIYVIGGHSETD---TTTEYLLPNHDQWQFGPSTYYPHY----KSCALVFGRRLFLVGR---N---AEFY 420 (480)
T ss_pred cccEEEEECCEEEEecCcCCCC---ccEEEEeCCCCEEEeCCCCCCccc----cceEEEECCEEEEECC---c---eEEe
Confidence 5667789999999998865322 36889999999999984 333322 3456789999999975 1 2222
Q ss_pred EeccCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeeccc--CCCcEEEEEeCCCCcEEEE
Q 017140 277 VLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTV--SDSVYVIHYDVVNRSMRRA 345 (376)
Q Consensus 277 ~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~--~~~~~l~~ydl~t~~~~~v 345 (376)
+.+.+.|+.+. .+|.. + .+ ..++..+|+|++++-.. .....+..||+++++|+..
T Consensus 421 ---dp~~~~W~~~~-~m~~~--r--~~------~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 421 ---CESSNTWTLID-DPIYP--R--DN------PELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred ---cCCCCcEeEcC-CCCCC--c--cc------cEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 34467899874 44432 1 11 11222578888875211 1124689999999999754
No 8
>PHA03098 kelch-like protein; Provisional
Probab=99.07 E-value=1.2e-08 Score=102.46 Aligned_cols=202 Identities=13% Similarity=0.083 Sum_probs=125.0
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEEEeecCCCCCcEEEEEeCCCceEECcCCCCcc
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTNSWRPLKGGPNYY 197 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~ 197 (376)
.++.+||.|++|. .+ |++...+........ .+...|++-.........+++|+..+++|+..+.++...
T Consensus 312 ~v~~yd~~~~~W~------~~--~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r 380 (534)
T PHA03098 312 SVVSYDTKTKSWN------KV--PELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR 380 (534)
T ss_pred cEEEEeCCCCeee------EC--CCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC
Confidence 6899999999999 66 655433222122222 222333331111123567899999999999988776555
Q ss_pred CCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEe-cChhhhccCCccceEEeCCeEEEEEccCCCCC---eE
Q 017140 198 PQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIE-IPAKALARRSESELIVYSGRPAIADHLLLEDA---TM 273 (376)
Q Consensus 198 ~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~-lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~---~l 273 (376)
....++.++|.+|.+++..........+..||+.+.+|..+. +|.... ....+..+|+|+++........ .-
T Consensus 381 ~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~----~~~~~~~~~~iyv~GG~~~~~~~~~~~ 456 (534)
T PHA03098 381 YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY----GGCAIYHDGKIYVIGGISYIDNIKVYN 456 (534)
T ss_pred ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc----CceEEEECCEEEEECCccCCCCCcccc
Confidence 556678899999999875322111247999999999999874 444332 3346778999999986422111 12
Q ss_pred EEEEeccCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeeccc--CCCcEEEEEeCCCCcEEEEE
Q 017140 274 TIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTV--SDSVYVIHYDVVNRSMRRAE 346 (376)
Q Consensus 274 ~IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~--~~~~~l~~ydl~t~~~~~v~ 346 (376)
.+|..+ ..++.|+.+. .+|.. + .. .. . ++ .+|.|+++.... .....+..||+++++|+.+.
T Consensus 457 ~v~~yd-~~~~~W~~~~-~~~~~--r--~~---~~-~-~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 519 (534)
T PHA03098 457 IVESYN-PVTNKWTELS-SLNFP--R--IN---AS-L-CI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC 519 (534)
T ss_pred eEEEec-CCCCceeeCC-CCCcc--c--cc---ce-E-EE-ECCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence 366664 3466899874 33321 1 11 11 1 22 367777764211 11347899999999998874
No 9
>PHA02713 hypothetical protein; Provisional
Probab=99.07 E-value=1.4e-08 Score=101.86 Aligned_cols=201 Identities=6% Similarity=0.047 Sum_probs=123.4
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEE-EeecCCCCCcEEEEEeCCCceEECcCCCCc
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLN-SWAIPGRDPEYRIFELGTNSWRPLKGGPNY 196 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~-~~~~~~~~~~~~vyss~~~~W~~~~~~~~~ 196 (376)
.+..+||.+++|. .+ ++++........... .+.-.|++ ..........++.|+..++.|..++.++..
T Consensus 273 ~v~~yd~~~~~W~------~l--~~mp~~r~~~~~a~l---~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~ 341 (557)
T PHA02713 273 CILVYNINTMEYS------VI--STIPNHIINYASAIV---DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN 341 (557)
T ss_pred CEEEEeCCCCeEE------EC--CCCCccccceEEEEE---CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch
Confidence 4678999999999 66 554433222111111 22222332 211112346799999999999998887765
Q ss_pred cCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEE-ecChhhhccCCccceEEeCCeEEEEEccCCCC-----
Q 017140 197 YPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVI-EIPAKALARRSESELIVYSGRPAIADHLLLED----- 270 (376)
Q Consensus 197 ~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~----- 270 (376)
+.....+.++|++|.+++...... ...+.+||+.+.+|..+ ++|.... ....++++|+||++.......
T Consensus 342 R~~~~~~~~~g~IYviGG~~~~~~-~~sve~Ydp~~~~W~~~~~mp~~r~----~~~~~~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 342 RCRFSLAVIDDTIYAIGGQNGTNV-ERTIECYTMGDDKWKMLPDMPIALS----SYGMCVLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred hhceeEEEECCEEEEECCcCCCCC-CceEEEEECCCCeEEECCCCCcccc----cccEEEECCEEEEEeCCCcccccccc
Confidence 556678899999999998643211 13799999999999987 4454433 445678999999998743110
Q ss_pred -------------CeEEEEEeccCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccCC---CcEEEE
Q 017140 271 -------------ATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSD---SVYVIH 334 (376)
Q Consensus 271 -------------~~l~IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~---~~~l~~ 334 (376)
..-.+... |...+.|+.+. .+|.. + .. ..++..+|.|++++..... ...+..
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~Y-DP~td~W~~v~-~m~~~--r--~~------~~~~~~~~~IYv~GG~~~~~~~~~~ve~ 484 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRY-DTVNNIWETLP-NFWTG--T--IR------PGVVSHKDDIYVVCDIKDEKNVKTCIFR 484 (557)
T ss_pred cccccccccccccccceEEEE-CCCCCeEeecC-CCCcc--c--cc------CcEEEECCEEEEEeCCCCCCccceeEEE
Confidence 01123333 33456898764 44322 1 11 1122247888887521111 134789
Q ss_pred EeCCC-CcEEEEE
Q 017140 335 YDVVN-RSMRRAE 346 (376)
Q Consensus 335 ydl~t-~~~~~v~ 346 (376)
||+++ ++|+.+.
T Consensus 485 Ydp~~~~~W~~~~ 497 (557)
T PHA02713 485 YNTNTYNGWELIT 497 (557)
T ss_pred ecCCCCCCeeEcc
Confidence 99999 8999864
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.98 E-value=2.4e-08 Score=99.99 Aligned_cols=202 Identities=13% Similarity=0.083 Sum_probs=132.5
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEE-EeecCCCCCcEEEEEeCCCceEECcCCCCc
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLN-SWAIPGRDPEYRIFELGTNSWRPLKGGPNY 196 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~-~~~~~~~~~~~~vyss~~~~W~~~~~~~~~ 196 (376)
.+..+||.+++|. .+ .+++.++.. .+.+.- .+.-.|++ ..........++.|++.+++|..++.+...
T Consensus 302 ~ve~yd~~~~~w~------~~--a~m~~~r~~-~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~ 370 (571)
T KOG4441|consen 302 SVECYDPKTNEWS------SL--APMPSPRCR-VGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK 370 (571)
T ss_pred eeEEecCCcCcEe------ec--CCCCccccc-ccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc
Confidence 6789999999999 66 544433322 222221 12222333 221123467899999999999998888777
Q ss_pred cCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEe-cChhhhccCCccceEEeCCeEEEEEccCCCCCeEEE
Q 017140 197 YPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIE-IPAKALARRSESELIVYSGRPAIADHLLLEDATMTI 275 (376)
Q Consensus 197 ~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~-lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~I 275 (376)
+.....+.++|.+|-+++.+.... -..+..||+.+.+|..+. ++.... ..-.++.+|+||++...+.....++-
T Consensus 371 R~~~~v~~l~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va~m~~~r~----~~gv~~~~g~iYi~GG~~~~~~~l~s 445 (571)
T KOG4441|consen 371 RSDFGVAVLDGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVAPMLTRRS----GHGVAVLGGKLYIIGGGDGSSNCLNS 445 (571)
T ss_pred cccceeEEECCEEEEEeccccccc-cccEEEecCCCCcccccCCCCccee----eeEEEEECCEEEEEcCcCCCccccce
Confidence 667788999999999998874322 147999999999999984 555332 55678999999999885433323332
Q ss_pred EEeccCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccC--CCcEEEEEeCCCCcEEEEE
Q 017140 276 WVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVS--DSVYVIHYDVVNRSMRRAE 346 (376)
Q Consensus 276 W~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~--~~~~l~~ydl~t~~~~~v~ 346 (376)
=.--|..++.|+.+. .++.... . +.++.-+|.|+.+.-..+ ....+-.||+++++|..+.
T Consensus 446 ve~YDP~t~~W~~~~-~M~~~R~---------~-~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 446 VECYDPETNTWTLIA-PMNTRRS---------G-FGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred EEEEcCCCCceeecC-Ccccccc---------c-ceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 222245567899974 4432211 1 112225777777753211 1335899999999999985
No 11
>PLN02153 epithiospecifier protein
Probab=98.97 E-value=1.1e-07 Score=89.96 Aligned_cols=212 Identities=11% Similarity=0.098 Sum_probs=119.9
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCCC-CccceeEEEeEeCCCCcEEEEE-EeecCCCCCcEEEEEeCCCceEECcCC--
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSVN-STYFCVNSFGFDPVSKKYKVLN-SWAIPGRDPEYRIFELGTNSWRPLKGG-- 193 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~-~~~~~~~~l~~d~~~~~ykvv~-~~~~~~~~~~~~vyss~~~~W~~~~~~-- 193 (376)
.++++||.+++|. .+ |+.. .+.....++......+...|++ ... ......+++|+..+++|+.+..+
T Consensus 51 ~~~~yd~~~~~W~------~~--~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~ 121 (341)
T PLN02153 51 DLYVFDFNTHTWS------IA--PANGDVPRISCLGVRMVAVGTKLYIFGGRDE-KREFSDFYSYDTVKNEWTFLTKLDE 121 (341)
T ss_pred cEEEEECCCCEEE------Ec--CccCCCCCCccCceEEEEECCEEEEECCCCC-CCccCcEEEEECCCCEEEEeccCCC
Confidence 6899999999999 55 4331 1111001111111123333333 211 12345799999999999987654
Q ss_pred ---CCccCCCcceEECceEEEEEecCCCC--C---CccEEEEEEcCCcceEEEecChhhhccCCccceEEeCCeEEEEEc
Q 017140 194 ---PNYYPQRESVCVDGFVYFRSWVSTHK--N---GRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADH 265 (376)
Q Consensus 194 ---~~~~~~~~~v~~~G~lyw~~~~~~~~--~---~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~~ 265 (376)
+..+....++..+|++|.+++..... . ....+.+||+++.+|..++.+...........++..+|+|+++..
T Consensus 122 ~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG 201 (341)
T PLN02153 122 EGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYG 201 (341)
T ss_pred CCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEec
Confidence 22333556788899999998764211 0 012688999999999987543211001123346778999999865
Q ss_pred cCCC--------CCeEEEEEeccCCCCCeEEEEEE--cCCCcccccccccccceeEEeecCCeEEEeecccC--------
Q 017140 266 LLLE--------DATMTIWVLDENDGDYWVQIKVF--LPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVS-------- 327 (376)
Q Consensus 266 ~~~~--------~~~l~IW~l~~~~~~~W~~~~~~--lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~-------- 327 (376)
.... ...-++++++ .+...|+++... +|.. + .. ...+..++.|+++.-...
T Consensus 202 ~~~~~~~gG~~~~~~~~v~~yd-~~~~~W~~~~~~g~~P~~--r--~~------~~~~~~~~~iyv~GG~~~~~~~~~~~ 270 (341)
T PLN02153 202 FATSILPGGKSDYESNAVQFFD-PASGKWTEVETTGAKPSA--R--SV------FAHAVVGKYIIIFGGEVWPDLKGHLG 270 (341)
T ss_pred cccccccCCccceecCceEEEE-cCCCcEEeccccCCCCCC--c--ce------eeeEEECCEEEEECcccCCccccccc
Confidence 2110 0012356653 335689987422 3432 1 11 111213567777642100
Q ss_pred ---CCcEEEEEeCCCCcEEEEEEec
Q 017140 328 ---DSVYVIHYDVVNRSMRRAEIFG 349 (376)
Q Consensus 328 ---~~~~l~~ydl~t~~~~~v~~~~ 349 (376)
....++.||+++++|+.+...+
T Consensus 271 ~~~~~n~v~~~d~~~~~W~~~~~~~ 295 (341)
T PLN02153 271 PGTLSNEGYALDTETLVWEKLGECG 295 (341)
T ss_pred cccccccEEEEEcCccEEEeccCCC
Confidence 0136899999999999886443
No 12
>PLN02193 nitrile-specifier protein
Probab=98.84 E-value=5.6e-07 Score=88.67 Aligned_cols=207 Identities=15% Similarity=0.185 Sum_probs=121.6
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCCC-Cc---cceeEEEeEeCCCCcEEEEE-EeecCCCCCcEEEEEeCCCceEECcC
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSVN-ST---YFCVNSFGFDPVSKKYKVLN-SWAIPGRDPEYRIFELGTNSWRPLKG 192 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~-~~---~~~~~~l~~d~~~~~ykvv~-~~~~~~~~~~~~vyss~~~~W~~~~~ 192 (376)
.++++||.+++|. .+ |+.. .+ .........+ +...|+. ... ......+++|++.+++|+.+..
T Consensus 194 ~v~~yD~~~~~W~------~~--~~~g~~P~~~~~~~~~v~~~---~~lYvfGG~~~-~~~~ndv~~yD~~t~~W~~l~~ 261 (470)
T PLN02193 194 HLYVFDLETRTWS------IS--PATGDVPHLSCLGVRMVSIG---STLYVFGGRDA-SRQYNGFYSFDTTTNEWKLLTP 261 (470)
T ss_pred cEEEEECCCCEEE------eC--CCCCCCCCCcccceEEEEEC---CEEEEECCCCC-CCCCccEEEEECCCCEEEEcCc
Confidence 5899999999999 44 3221 11 1111112222 2222322 211 1234679999999999999876
Q ss_pred C---CCccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEecChhhhccCCccceEEeCCeEEEEEccCCC
Q 017140 193 G---PNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLE 269 (376)
Q Consensus 193 ~---~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~ 269 (376)
+ |..+.....+.+++++|.++....... ...+.+||+.+.+|..++.|...........++..+|+++++.... .
T Consensus 262 ~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~-~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~-g 339 (470)
T PLN02193 262 VEEGPTPRSFHSMAADEENVYVFGGVSATAR-LKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFN-G 339 (470)
T ss_pred CCCCCCCccceEEEEECCEEEEECCCCCCCC-cceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCC-C
Confidence 5 333335566788999999987643211 1368899999999998865432111112345667899999987632 1
Q ss_pred CCeEEEEEeccCCCCCeEEEEEE--cCCCcccccccccccceeEEeecCCeEEEeecccC-----------CCcEEEEEe
Q 017140 270 DATMTIWVLDENDGDYWVQIKVF--LPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVS-----------DSVYVIHYD 336 (376)
Q Consensus 270 ~~~l~IW~l~~~~~~~W~~~~~~--lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~-----------~~~~l~~yd 336 (376)
...-++|+++ .....|+++... .|.. + .. ..++..++.|+++.-... ....++.||
T Consensus 340 ~~~~dv~~yD-~~t~~W~~~~~~g~~P~~--R--~~------~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D 408 (470)
T PLN02193 340 CEVDDVHYYD-PVQDKWTQVETFGVRPSE--R--SV------FASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD 408 (470)
T ss_pred CccCceEEEE-CCCCEEEEeccCCCCCCC--c--ce------eEEEEECCEEEEECCccCCccccccCccceeccEEEEE
Confidence 2234577775 335689987422 2322 1 11 111223667777642110 012489999
Q ss_pred CCCCcEEEEEEec
Q 017140 337 VVNRSMRRAEIFG 349 (376)
Q Consensus 337 l~t~~~~~v~~~~ 349 (376)
+.+++|+++...+
T Consensus 409 ~~t~~W~~~~~~~ 421 (470)
T PLN02193 409 TETLQWERLDKFG 421 (470)
T ss_pred cCcCEEEEcccCC
Confidence 9999999986433
No 13
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.79 E-value=1.6e-09 Score=70.79 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHhcCCCccccceeeeccccchhhccChhhHhh
Q 017140 11 SKPIPSEIIYDILTKLPIKSLMRFRCLSKLCSSYITAPSFAEL 53 (376)
Q Consensus 11 ~~~LP~Dll~~IL~rLP~~~l~r~r~VCK~W~~li~s~~F~~~ 53 (376)
+..||+|++.+||..||++++.+++.|||+|+.++.++.+-+.
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~ 43 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRR 43 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhh
Confidence 4679999999999999999999999999999999988765544
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.78 E-value=2.4e-06 Score=80.14 Aligned_cols=111 Identities=10% Similarity=0.089 Sum_probs=76.2
Q ss_pred CCcEEEEEeCCCce----EECcCCCCccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEe-cChhhhccC
Q 017140 174 DPEYRIFELGTNSW----RPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIE-IPAKALARR 248 (376)
Q Consensus 174 ~~~~~vyss~~~~W----~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~-lP~~~~~~~ 248 (376)
...++.|+..++.| +.++.++.......++.++|++|.+++...... ...+.+||+.+.+|..++ +|....
T Consensus 87 ~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~-~~~v~~yd~~~~~W~~~~~~p~~~r--- 162 (323)
T TIGR03548 87 FSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKP-SNKSYLFNLETQEWFELPDFPGEPR--- 162 (323)
T ss_pred ceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCcc-CceEEEEcCCCCCeeECCCCCCCCC---
Confidence 45788999999988 556555544445677889999999987532111 147999999999999884 664322
Q ss_pred CccceEEeCCeEEEEEccCCCCCeEEEEEeccCCCCCeEEEE
Q 017140 249 SESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIK 290 (376)
Q Consensus 249 ~~~~l~~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~ 290 (376)
....++..+|+|+++...+ .....+++..+ ...+.|+++.
T Consensus 163 ~~~~~~~~~~~iYv~GG~~-~~~~~~~~~yd-~~~~~W~~~~ 202 (323)
T TIGR03548 163 VQPVCVKLQNELYVFGGGS-NIAYTDGYKYS-PKKNQWQKVA 202 (323)
T ss_pred CcceEEEECCEEEEEcCCC-CccccceEEEe-cCCCeeEECC
Confidence 2344568899999998742 22234566663 4456899874
No 15
>PHA03098 kelch-like protein; Provisional
Probab=98.73 E-value=5e-07 Score=90.77 Aligned_cols=200 Identities=9% Similarity=0.041 Sum_probs=120.5
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEE-EeecCCCCCcEEEEEeCCCceEECcCCCCc
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLN-SWAIPGRDPEYRIFELGTNSWRPLKGGPNY 196 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~-~~~~~~~~~~~~vyss~~~~W~~~~~~~~~ 196 (376)
.+.-+|+.+++|. .+ ++.+... ...+... .+...|++ ..........+..|+..+++|..++.++..
T Consensus 265 ~~~~~~~~~~~~~------~~--~~~~~~~-~~~~~~~---~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~ 332 (534)
T PHA03098 265 NYITNYSPLSEIN------TI--IDIHYVY-CFGSVVL---NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP 332 (534)
T ss_pred eeeecchhhhhcc------cc--cCccccc-cceEEEE---CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc
Confidence 3455788899998 66 4332211 1011111 22222333 211112234789999999999998877655
Q ss_pred cCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEE-ecChhhhccCCccceEEeCCeEEEEEccCCCCC-eEE
Q 017140 197 YPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVI-EIPAKALARRSESELIVYSGRPAIADHLLLEDA-TMT 274 (376)
Q Consensus 197 ~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~-~l~ 274 (376)
+.....+.++|.+|.+++...... ...+..||+.+.+|..+ ++|.... ....+..+|+|+++........ .=.
T Consensus 333 R~~~~~~~~~~~lyv~GG~~~~~~-~~~v~~yd~~~~~W~~~~~lp~~r~----~~~~~~~~~~iYv~GG~~~~~~~~~~ 407 (534)
T PHA03098 333 RKNPGVTVFNNRIYVIGGIYNSIS-LNTVESWKPGESKWREEPPLIFPRY----NPCVVNVNNLIYVIGGISKNDELLKT 407 (534)
T ss_pred cccceEEEECCEEEEEeCCCCCEe-cceEEEEcCCCCceeeCCCcCcCCc----cceEEEECCEEEEECCcCCCCcccce
Confidence 556677889999999998653211 13688999999999987 4554432 4456778999999987422221 123
Q ss_pred EEEeccCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccCC-----CcEEEEEeCCCCcEEEEE
Q 017140 275 IWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSD-----SVYVIHYDVVNRSMRRAE 346 (376)
Q Consensus 275 IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~-----~~~l~~ydl~t~~~~~v~ 346 (376)
++..+ ..++.|+++. .+|.. ..+ ...+..+|.|+++.-.... -..+..||+++++|+.+.
T Consensus 408 v~~yd-~~t~~W~~~~-~~p~~----r~~------~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~ 472 (534)
T PHA03098 408 VECFS-LNTNKWSKGS-PLPIS----HYG------GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS 472 (534)
T ss_pred EEEEe-CCCCeeeecC-CCCcc----ccC------ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence 55553 3356899864 44432 111 1122246777776421111 124899999999999874
No 16
>PHA02790 Kelch-like protein; Provisional
Probab=98.67 E-value=1.1e-06 Score=86.78 Aligned_cols=158 Identities=9% Similarity=0.018 Sum_probs=100.4
Q ss_pred ccceeeEE--Eec--CCeeEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEEEeecCCCCCcEEE
Q 017140 104 TRSVNGII--LMD--FGLYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYRI 179 (376)
Q Consensus 104 ~~s~~Gll--~~~--~~~~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~v 179 (376)
....+|.| ... ....+..++|.+++|. .+ |+++.......+..++ +...|++ ........++.
T Consensus 314 ~v~~~~~iYviGG~~~~~sve~ydp~~n~W~------~~--~~l~~~r~~~~~~~~~---g~IYviG--G~~~~~~~ve~ 380 (480)
T PHA02790 314 GVPANNKLYVVGGLPNPTSVERWFHGDAAWV------NM--PSLLKPRCNPAVASIN---NVIYVIG--GHSETDTTTEY 380 (480)
T ss_pred EEEECCEEEEECCcCCCCceEEEECCCCeEE------EC--CCCCCCCcccEEEEEC---CEEEEec--CcCCCCccEEE
Confidence 34577877 221 1125788999999999 66 6665433222222322 2233433 21112357899
Q ss_pred EEeCCCceEECcCCCCccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEe-cChhhhccCCccceEEeCC
Q 017140 180 FELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIE-IPAKALARRSESELIVYSG 258 (376)
Q Consensus 180 yss~~~~W~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~-lP~~~~~~~~~~~l~~~~G 258 (376)
|++++++|..++.++.......++.++|++|.+++ ...+||+++++|+.++ +|... ....+++.+|
T Consensus 381 ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---------~~e~ydp~~~~W~~~~~m~~~r----~~~~~~v~~~ 447 (480)
T PHA02790 381 LLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---------NAEFYCESSNTWTLIDDPIYPR----DNPELIIVDN 447 (480)
T ss_pred EeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---------ceEEecCCCCcEeEcCCCCCCc----cccEEEEECC
Confidence 99999999998877655555667889999999874 3667999999999884 44332 2556788999
Q ss_pred eEEEEEccCCCCCeEEEEEeccCCCCCeEE
Q 017140 259 RPAIADHLLLEDATMTIWVLDENDGDYWVQ 288 (376)
Q Consensus 259 ~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~ 288 (376)
+||++...+.....-.+... |.+.+.|+.
T Consensus 448 ~IYviGG~~~~~~~~~ve~Y-d~~~~~W~~ 476 (480)
T PHA02790 448 KLLLIGGFYRGSYIDTIEVY-NNRTYSWNI 476 (480)
T ss_pred EEEEECCcCCCcccceEEEE-ECCCCeEEe
Confidence 99999874321111123333 333567864
No 17
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.65 E-value=5.2e-06 Score=78.68 Aligned_cols=211 Identities=11% Similarity=0.024 Sum_probs=117.7
Q ss_pred eEEEEcC--CCCceeeCCCceeecCCCCCC-ccceeEEEeEeCCCCcEEEEE-EeecC-----CCCCcEEEEEeCCCceE
Q 017140 118 YATLCNP--STRQTFNTPFVCSLTSPSVNS-TYFCVNSFGFDPVSKKYKVLN-SWAIP-----GRDPEYRIFELGTNSWR 188 (376)
Q Consensus 118 ~~~V~NP--~T~~~~~~p~~~~L~~P~~~~-~~~~~~~l~~d~~~~~ykvv~-~~~~~-----~~~~~~~vyss~~~~W~ 188 (376)
.++++++ .+++|. .+ |+++. .+........ .+...|++ ..... .....++.|+..+++|+
T Consensus 30 ~~~~~d~~~~~~~W~------~l--~~~p~~~R~~~~~~~~---~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 30 SWYKLDLKKPSKGWQ------KI--ADFPGGPRNQAVAAAI---DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred eeEEEECCCCCCCce------EC--CCCCCCCcccceEEEE---CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Confidence 5777774 788999 66 65532 2211111222 23333444 22111 02357999999999999
Q ss_pred ECcCCCC-ccCCCcce-EECceEEEEEecCCCC---------------------------------CCccEEEEEEcCCc
Q 017140 189 PLKGGPN-YYPQRESV-CVDGFVYFRSWVSTHK---------------------------------NGRTVLIAFDLHEE 233 (376)
Q Consensus 189 ~~~~~~~-~~~~~~~v-~~~G~lyw~~~~~~~~---------------------------------~~~~~il~fD~~~~ 233 (376)
.++...+ ......++ .++|+||.+++..... .....+.+||+.+.
T Consensus 99 ~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~ 178 (346)
T TIGR03547 99 KLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN 178 (346)
T ss_pred cCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC
Confidence 9874322 22122334 6899999998753210 00137999999999
Q ss_pred ceEEE-ecChhhhccCCccceEEeCCeEEEEEccCCC-CCeEEEEEec-cCCCCCeEEEEEEcCCCccccccccccccee
Q 017140 234 SFRVI-EIPAKALARRSESELIVYSGRPAIADHLLLE-DATMTIWVLD-ENDGDYWVQIKVFLPEDYGEEILEEDIDYFV 310 (376)
Q Consensus 234 ~~~~i-~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~-~~~l~IW~l~-~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~ 310 (376)
+|+.+ ++|.... ....++..+|+|+++...... ....++|..+ +.+...|+++. .+|........+. .. .
T Consensus 179 ~W~~~~~~p~~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~-~m~~~r~~~~~~~--~~-~ 251 (346)
T TIGR03547 179 QWRNLGENPFLGT---AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP-PLPPPKSSSQEGL--AG-A 251 (346)
T ss_pred ceeECccCCCCcC---CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecC-CCCCCCCCccccc--cE-E
Confidence 99998 4553222 244567889999999874321 2234566654 33445899874 4443210000000 01 1
Q ss_pred EEeecCCeEEEeecccC-------------------CCcEEEEEeCCCCcEEEEE
Q 017140 311 DCIGRNNELLLVPQTVS-------------------DSVYVIHYDVVNRSMRRAE 346 (376)
Q Consensus 311 ~~~~~~g~ill~~~~~~-------------------~~~~l~~ydl~t~~~~~v~ 346 (376)
..+..+|+|+++.-... ....+-.||+++++|+.+.
T Consensus 252 ~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 306 (346)
T TIGR03547 252 FAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG 306 (346)
T ss_pred eeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence 11114777777642100 0125789999999998774
No 18
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.57 E-value=1.2e-08 Score=64.43 Aligned_cols=40 Identities=40% Similarity=0.580 Sum_probs=37.2
Q ss_pred CCHHHHHHHhcCCCccccceeeeccccchhhccChhhHhh
Q 017140 14 IPSEIIYDILTKLPIKSLMRFRCLSKLCSSYITAPSFAEL 53 (376)
Q Consensus 14 LP~Dll~~IL~rLP~~~l~r~r~VCK~W~~li~s~~F~~~ 53 (376)
||+|++.+||.+|+++++.++++|||+|+.++.++.|.+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~ 40 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK 40 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence 7999999999999999999999999999999999887543
No 19
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.57 E-value=1.6e-08 Score=66.36 Aligned_cols=44 Identities=30% Similarity=0.426 Sum_probs=37.5
Q ss_pred CCCCCHHHHHHHhcCCCccccceeeeccccchhhccChhhHhhh
Q 017140 11 SKPIPSEIIYDILTKLPIKSLMRFRCLSKLCSSYITAPSFAELH 54 (376)
Q Consensus 11 ~~~LP~Dll~~IL~rLP~~~l~r~r~VCK~W~~li~s~~F~~~h 54 (376)
+..||+|++.+||.+|+++++.+++.|||+|+.++.++.+...+
T Consensus 3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~ 46 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI 46 (48)
T ss_dssp HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence 45799999999999999999999999999999999998887654
No 20
>PLN02193 nitrile-specifier protein
Probab=98.51 E-value=1.3e-05 Score=79.18 Aligned_cols=158 Identities=11% Similarity=0.076 Sum_probs=97.6
Q ss_pred CcEEEEEeCCCceEECcCC--CCc--cCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEe-c---Chhhhc
Q 017140 175 PEYRIFELGTNSWRPLKGG--PNY--YPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIE-I---PAKALA 246 (376)
Q Consensus 175 ~~~~vyss~~~~W~~~~~~--~~~--~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~-l---P~~~~~ 246 (376)
..+++|+..+++|..+... .+. +....++.++++||.+++...... ...+.+||+.+.+|+.+. + |....
T Consensus 193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~-~ndv~~yD~~t~~W~~l~~~~~~P~~R~- 270 (470)
T PLN02193 193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQ-YNGFYSFDTTTNEWKLLTPVEEGPTPRS- 270 (470)
T ss_pred CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCC-CccEEEEECCCCEEEEcCcCCCCCCCcc-
Confidence 4699999999999986542 122 113456788999999987543211 136899999999999874 3 22221
Q ss_pred cCCccceEEeCCeEEEEEccCCCCCeEEEEEeccCCCCCeEEEEEE--cCCCcccccccccccceeEEeecCCeEEEeec
Q 017140 247 RRSESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVF--LPEDYGEEILEEDIDYFVDCIGRNNELLLVPQ 324 (376)
Q Consensus 247 ~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~~~--lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~ 324 (376)
...++..+++|+++.........-+++.++ ....+|+.+... .|.. + . . ..++..+|+|+++.-
T Consensus 271 ---~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd-~~t~~W~~~~~~~~~~~~--R--~-----~-~~~~~~~gkiyviGG 336 (470)
T PLN02193 271 ---FHSMAADEENVYVFGGVSATARLKTLDSYN-IVDKKWFHCSTPGDSFSI--R--G-----G-AGLEVVQGKVWVVYG 336 (470)
T ss_pred ---ceEEEEECCEEEEECCCCCCCCcceEEEEE-CCCCEEEeCCCCCCCCCC--C--C-----C-cEEEEECCcEEEEEC
Confidence 334567899999998743222223456664 335689876321 1111 0 1 1 111224677776642
Q ss_pred c-cCCCcEEEEEeCCCCcEEEEEEe
Q 017140 325 T-VSDSVYVIHYDVVNRSMRRAEIF 348 (376)
Q Consensus 325 ~-~~~~~~l~~ydl~t~~~~~v~~~ 348 (376)
. ......+..||+++++|+.+...
T Consensus 337 ~~g~~~~dv~~yD~~t~~W~~~~~~ 361 (470)
T PLN02193 337 FNGCEVDDVHYYDPVQDKWTQVETF 361 (470)
T ss_pred CCCCccCceEEEECCCCEEEEeccC
Confidence 1 11235699999999999998643
No 21
>PLN02153 epithiospecifier protein
Probab=98.48 E-value=2.3e-05 Score=74.10 Aligned_cols=157 Identities=12% Similarity=0.066 Sum_probs=95.0
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCC-----CCccceeEEEeEeCCCCcEEEEE-EeecC-----CCCCcEEEEEeCCCc
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSV-----NSTYFCVNSFGFDPVSKKYKVLN-SWAIP-----GRDPEYRIFELGTNS 186 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~-----~~~~~~~~~l~~d~~~~~ykvv~-~~~~~-----~~~~~~~vyss~~~~ 186 (376)
.++++||.|++|. .+ |++ +..+.. ...... .+...|++ ..... .....+++|+.++++
T Consensus 102 ~v~~yd~~t~~W~------~~--~~~~~~~~p~~R~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 102 DFYSYDTVKNEWT------FL--TKLDEEGGPEARTF-HSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred cEEEEECCCCEEE------Ee--ccCCCCCCCCCcee-eEEEEE--CCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 6899999999999 66 543 111111 222211 22333443 22111 012468999999999
Q ss_pred eEECcCCC---CccCCCcceEECceEEEEEecCCC------C-CCccEEEEEEcCCcceEEEe----cChhhhccCCccc
Q 017140 187 WRPLKGGP---NYYPQRESVCVDGFVYFRSWVSTH------K-NGRTVLIAFDLHEESFRVIE----IPAKALARRSESE 252 (376)
Q Consensus 187 W~~~~~~~---~~~~~~~~v~~~G~lyw~~~~~~~------~-~~~~~il~fD~~~~~~~~i~----lP~~~~~~~~~~~ 252 (376)
|+.+.... ........+.++|++|.+.+.... . .....+.+||+.+.+|..++ .|.... ...
T Consensus 171 W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~----~~~ 246 (341)
T PLN02153 171 WVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS----VFA 246 (341)
T ss_pred EeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc----eee
Confidence 99887543 222244567899999998754210 0 00136999999999999885 343322 334
Q ss_pred eEEeCCeEEEEEccCCC-------CC--eEEEEEeccCCCCCeEEEE
Q 017140 253 LIVYSGRPAIADHLLLE-------DA--TMTIWVLDENDGDYWVQIK 290 (376)
Q Consensus 253 l~~~~G~L~l~~~~~~~-------~~--~l~IW~l~~~~~~~W~~~~ 290 (376)
.+..+++|+++...... .. .-++|+++ .+.+.|+++.
T Consensus 247 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d-~~~~~W~~~~ 292 (341)
T PLN02153 247 HAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALD-TETLVWEKLG 292 (341)
T ss_pred eEEECCEEEEECcccCCccccccccccccccEEEEE-cCccEEEecc
Confidence 56789999999874211 11 12789986 4467899873
No 22
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.47 E-value=3.5e-05 Score=73.91 Aligned_cols=166 Identities=15% Similarity=0.113 Sum_probs=97.4
Q ss_pred CCcEEEEEeCCCceEECcCCC-CccCCCcceE-ECceEEEEEecCCCC--------------------------------
Q 017140 174 DPEYRIFELGTNSWRPLKGGP-NYYPQRESVC-VDGFVYFRSWVSTHK-------------------------------- 219 (376)
Q Consensus 174 ~~~~~vyss~~~~W~~~~~~~-~~~~~~~~v~-~~G~lyw~~~~~~~~-------------------------------- 219 (376)
...+++|+..+++|+.+.... .......++. .+|+||.+++.....
T Consensus 105 ~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~ 184 (376)
T PRK14131 105 FDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED 184 (376)
T ss_pred cccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh
Confidence 357999999999999987532 2222233344 799999998753200
Q ss_pred -CCccEEEEEEcCCcceEEEe-cChhhhccCCccceEEeCCeEEEEEccCCC-CCeEEEEEec-cCCCCCeEEEEEEcCC
Q 017140 220 -NGRTVLIAFDLHEESFRVIE-IPAKALARRSESELIVYSGRPAIADHLLLE-DATMTIWVLD-ENDGDYWVQIKVFLPE 295 (376)
Q Consensus 220 -~~~~~il~fD~~~~~~~~i~-lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~-~~~l~IW~l~-~~~~~~W~~~~~~lp~ 295 (376)
.....+..||+.+.+|..+. +|.... ....++..+++|+++...... ....++|..+ +.+...|+++. .+|.
T Consensus 185 ~~~~~~v~~YD~~t~~W~~~~~~p~~~~---~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~p~ 260 (376)
T PRK14131 185 YFFNKEVLSYDPSTNQWKNAGESPFLGT---AGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP-DLPP 260 (376)
T ss_pred cCcCceEEEEECCCCeeeECCcCCCCCC---CcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC-CCCC
Confidence 00136999999999999874 553222 234567789999999874222 2445677654 33456899875 4443
Q ss_pred Ccccccccccccce-eEEeecCCeEEEeecccCC-------------------CcEEEEEeCCCCcEEEEE
Q 017140 296 DYGEEILEEDIDYF-VDCIGRNNELLLVPQTVSD-------------------SVYVIHYDVVNRSMRRAE 346 (376)
Q Consensus 296 ~~~~~~~~~~~~~~-~~~~~~~g~ill~~~~~~~-------------------~~~l~~ydl~t~~~~~v~ 346 (376)
.... .... ... ...+..+|.|+++.-.... ...+-.||+++++|+.+.
T Consensus 261 ~~~~-~~~~--~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 261 APGG-SSQE--GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred CCcC-CcCC--ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 2110 0000 000 1011146677776421000 013567999999998764
No 23
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.39 E-value=7e-05 Score=71.78 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=92.8
Q ss_pred CcEEEEEeCCCceEECcCCCC-ccCCCcceEECceEEEEEecCCCCC--CccEEEEEEcCCcceEEE-ecChhhhcc---
Q 017140 175 PEYRIFELGTNSWRPLKGGPN-YYPQRESVCVDGFVYFRSWVSTHKN--GRTVLIAFDLHEESFRVI-EIPAKALAR--- 247 (376)
Q Consensus 175 ~~~~vyss~~~~W~~~~~~~~-~~~~~~~v~~~G~lyw~~~~~~~~~--~~~~il~fD~~~~~~~~i-~lP~~~~~~--- 247 (376)
..+++|+..+++|..++.++. .......+.++|+||.+++...... .......+|+++.+|..+ ++|......
T Consensus 189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~ 268 (376)
T PRK14131 189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQE 268 (376)
T ss_pred ceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCC
Confidence 579999999999999887664 3334556778999999997532111 012455678889999887 455432110
Q ss_pred -CCccceEEeCCeEEEEEccCCCCC-------e-------EEEEEec--cCCCCCeEEEEEEcCCCccccccccccccee
Q 017140 248 -RSESELIVYSGRPAIADHLLLEDA-------T-------MTIWVLD--ENDGDYWVQIKVFLPEDYGEEILEEDIDYFV 310 (376)
Q Consensus 248 -~~~~~l~~~~G~L~l~~~~~~~~~-------~-------l~IW~l~--~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~ 310 (376)
......+..+|+|+++........ . -.+|..+ +.+.+.|+++. .+|.... . .
T Consensus 269 ~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~-~lp~~r~---------~-~ 337 (376)
T PRK14131 269 GVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG-ELPQGLA---------Y-G 337 (376)
T ss_pred ccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC-cCCCCcc---------c-e
Confidence 011224678999999986431110 0 0123222 23356798764 5564311 1 2
Q ss_pred EEeecCCeEEEeeccc---CCCcEEEEEeCCCCcEEE
Q 017140 311 DCIGRNNELLLVPQTV---SDSVYVIHYDVVNRSMRR 344 (376)
Q Consensus 311 ~~~~~~g~ill~~~~~---~~~~~l~~ydl~t~~~~~ 344 (376)
..+.-+|+|+++.-.. .....+..|+++++++..
T Consensus 338 ~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~ 374 (376)
T PRK14131 338 VSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV 374 (376)
T ss_pred EEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence 2222477788875210 112367888888877654
No 24
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.17 E-value=0.00021 Score=67.65 Aligned_cols=135 Identities=15% Similarity=0.183 Sum_probs=80.2
Q ss_pred CcEEEEEeCCCceEECcCCCC-ccCCCcceEECceEEEEEecCCCCCCccEEEEE--EcCCcceEEE-ecChhhhc--cC
Q 017140 175 PEYRIFELGTNSWRPLKGGPN-YYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAF--DLHEESFRVI-EIPAKALA--RR 248 (376)
Q Consensus 175 ~~~~vyss~~~~W~~~~~~~~-~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~f--D~~~~~~~~i-~lP~~~~~--~~ 248 (376)
..+++|+..+++|+.++.++. .......+.++|+||.+++..........+..| |+++.+|..+ ++|..... ..
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~ 247 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEG 247 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcccc
Confidence 579999999999999987764 233455678899999998764211101234444 4567799877 44433210 00
Q ss_pred -CccceEEeCCeEEEEEccCCCC-------------------CeEEEEEeccCCCCCeEEEEEEcCCCcccccccccccc
Q 017140 249 -SESELIVYSGRPAIADHLLLED-------------------ATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDY 308 (376)
Q Consensus 249 -~~~~l~~~~G~L~l~~~~~~~~-------------------~~l~IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~ 308 (376)
.....+..+|+|+++....... ...++|..+ .+.|+.+. .+|... . .
T Consensus 248 ~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~---~~~W~~~~-~lp~~~----~-----~ 314 (346)
T TIGR03547 248 LAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD---NGKWSKVG-KLPQGL----A-----Y 314 (346)
T ss_pred ccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec---CCcccccC-CCCCCc----e-----e
Confidence 1222567899999998642110 134556554 56799874 556431 1 1
Q ss_pred eeEEeecCCeEEEee
Q 017140 309 FVDCIGRNNELLLVP 323 (376)
Q Consensus 309 ~~~~~~~~g~ill~~ 323 (376)
...+..+|.|+++.
T Consensus 315 -~~~~~~~~~iyv~G 328 (346)
T TIGR03547 315 -GVSVSWNNGVLLIG 328 (346)
T ss_pred -eEEEEcCCEEEEEe
Confidence 11222477888875
No 25
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.17 E-value=0.0001 Score=69.11 Aligned_cols=145 Identities=12% Similarity=0.149 Sum_probs=90.5
Q ss_pred ceEECcCCCCccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceE----EE-ecChhhhccCCccceEEeCCeE
Q 017140 186 SWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFR----VI-EIPAKALARRSESELIVYSGRP 260 (376)
Q Consensus 186 ~W~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~----~i-~lP~~~~~~~~~~~l~~~~G~L 260 (376)
+|..+..++..+....++.+++.+|.+++...... ...+..||+.+.+|. .+ ++|.... ....++.+|+|
T Consensus 52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~-~~~v~~~d~~~~~w~~~~~~~~~lp~~~~----~~~~~~~~~~i 126 (323)
T TIGR03548 52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSER-FSSVYRITLDESKEELICETIGNLPFTFE----NGSACYKDGTL 126 (323)
T ss_pred eEEEcccCCccccceEEEEECCEEEEEcCCCCCCC-ceeEEEEEEcCCceeeeeeEcCCCCcCcc----CceEEEECCEE
Confidence 69998877765545567888999999987643211 137889999998883 33 3443332 34567789999
Q ss_pred EEEEccCCCCCeEEEEEeccCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeeccc-CCCcEEEEEeCCC
Q 017140 261 AIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTV-SDSVYVIHYDVVN 339 (376)
Q Consensus 261 ~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~-~~~~~l~~ydl~t 339 (376)
+++.........-++|+++ ...+.|+++. .+|.. .+ . . ..++..++.|+++.-.. .....+..||+++
T Consensus 127 Yv~GG~~~~~~~~~v~~yd-~~~~~W~~~~-~~p~~-~r---~----~-~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 127 YVGGGNRNGKPSNKSYLFN-LETQEWFELP-DFPGE-PR---V----Q-PVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred EEEeCcCCCccCceEEEEc-CCCCCeeECC-CCCCC-CC---C----c-ceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 9998742222233577775 3356899874 34421 11 1 1 11222467777774211 1123478999999
Q ss_pred CcEEEEE
Q 017140 340 RSMRRAE 346 (376)
Q Consensus 340 ~~~~~v~ 346 (376)
++|+.+.
T Consensus 196 ~~W~~~~ 202 (323)
T TIGR03548 196 NQWQKVA 202 (323)
T ss_pred CeeEECC
Confidence 9999885
No 26
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=98.07 E-value=0.0001 Score=64.62 Aligned_cols=221 Identities=13% Similarity=0.053 Sum_probs=130.0
Q ss_pred cccceeeEE-EecCCeeEEEEcCCCCceeeCCCceeecCCCCCCc------c-----cee--EEEeEeCCCCcEEEEEEe
Q 017140 103 TTRSVNGII-LMDFGLYATLCNPSTRQTFNTPFVCSLTSPSVNST------Y-----FCV--NSFGFDPVSKKYKVLNSW 168 (376)
Q Consensus 103 ~~~s~~Gll-~~~~~~~~~V~NP~T~~~~~~p~~~~L~~P~~~~~------~-----~~~--~~l~~d~~~~~ykvv~~~ 168 (376)
+-+-|.|-. -..++..+.|.|-.+-+|. .+ |+.... + ... ....++. .-.|.+-+
T Consensus 29 FGGYCsGedy~~~~piDVH~lNa~~~RWt------k~--pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d---~~yvWGGR 97 (392)
T KOG4693|consen 29 FGGYCSGEDYDAKDPIDVHVLNAENYRWT------KM--PPGITKATIESPYPAVPYQRYGHTVVEYQD---KAYVWGGR 97 (392)
T ss_pred cCCcccccccccCCcceeEEeeccceeEE------ec--CcccccccccCCCCccchhhcCceEEEEcc---eEEEEcCc
Confidence 344566666 3445557899999999999 66 552111 1 000 1111111 11122222
Q ss_pred ec-CCCCCcEEEEEeCCCceEECc---CCCCccCCCcceEECceEEEEEecCCCCC-CccEEEEEEcCCcceEEEe---c
Q 017140 169 AI-PGRDPEYRIFELGTNSWRPLK---GGPNYYPQRESVCVDGFVYFRSWVSTHKN-GRTVLIAFDLHEESFRVIE---I 240 (376)
Q Consensus 169 ~~-~~~~~~~~vyss~~~~W~~~~---~~~~~~~~~~~v~~~G~lyw~~~~~~~~~-~~~~il~fD~~~~~~~~i~---l 240 (376)
++ .+.....+-|+.+++.|+..+ ..|..+..+.+++.++.+|-.++..+... -.-.+-+||+++.+|+.+. -
T Consensus 98 ND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~ 177 (392)
T KOG4693|consen 98 NDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGD 177 (392)
T ss_pred cCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCC
Confidence 22 345778899999999998754 33444557778888989999886543210 0126899999999999984 4
Q ss_pred ChhhhccCCccceEEeCCeEEEEEccCCC-----------CCeEEEEEeccCCCCCeEEE--EEEcCCCccccccccccc
Q 017140 241 PAKALARRSESELIVYSGRPAIADHLLLE-----------DATMTIWVLDENDGDYWVQI--KVFLPEDYGEEILEEDID 307 (376)
Q Consensus 241 P~~~~~~~~~~~l~~~~G~L~l~~~~~~~-----------~~~l~IW~l~~~~~~~W~~~--~~~lp~~~~~~~~~~~~~ 307 (376)
|+...+ .-...+++|..+++.....+ ..+ |-.++ ..++.|..- ...+|.. + -+ +
T Consensus 178 PprwRD---FH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~--i~~ld-~~T~aW~r~p~~~~~P~G--R--RS---H 244 (392)
T KOG4693|consen 178 PPRWRD---FHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDT--IMALD-LATGAWTRTPENTMKPGG--R--RS---H 244 (392)
T ss_pred Cchhhh---hhhhhhccceEEEeccccccCCCccchhhhhcce--eEEEe-ccccccccCCCCCcCCCc--c--cc---c
Confidence 555442 12234567899988764321 223 33332 236779875 1234432 1 01 1
Q ss_pred ceeEEeecCCeEEEeecccC----CCcEEEEEeCCCCcEEEEEEecc
Q 017140 308 YFVDCIGRNNELLLVPQTVS----DSVYVIHYDVVNRSMRRAEIFGL 350 (376)
Q Consensus 308 ~~~~~~~~~g~ill~~~~~~----~~~~l~~ydl~t~~~~~v~~~~~ 350 (376)
..++ .+|+++++.-+.+ .-..+++||++|..|..|+..|-
T Consensus 245 --S~fv-Yng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk 288 (392)
T KOG4693|consen 245 --STFV-YNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGK 288 (392)
T ss_pred --ceEE-EcceEEEecccchhhhhhhcceeecccccchheeeeccCC
Confidence 1223 4888877753321 12358999999999999987754
No 27
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=97.64 E-value=0.0016 Score=57.39 Aligned_cols=183 Identities=14% Similarity=0.209 Sum_probs=110.0
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEE-Eeec-CCCCCcEEEEEeCCCceEECcC---
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLN-SWAI-PGRDPEYRIFELGTNSWRPLKG--- 192 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~-~~~~-~~~~~~~~vyss~~~~W~~~~~--- 192 (376)
.++-++|-|.+|.+.-+.--+ |+.+..... +.++ +...|++ .... ......+++++..|-+||.+..
T Consensus 106 ~Ly~fDp~t~~W~~p~v~G~v--PgaRDGHsA-cV~g-----n~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~ 177 (392)
T KOG4693|consen 106 LLYEFDPETNVWKKPEVEGFV--PGARDGHSA-CVWG-----NQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGD 177 (392)
T ss_pred eeeeeccccccccccceeeec--CCccCCcee-eEEC-----cEEEEecChHHHHHhhhccceeEeccceeeeehhccCC
Confidence 478899999999832211012 544332111 2221 2223433 2211 1246788999999999998743
Q ss_pred CCCccCCCcceEECceEEEEEecCCCCC------Cc--cEEEEEEcCCcceEEEe----cChhhhccCCccceEEeCCeE
Q 017140 193 GPNYYPQRESVCVDGFVYFRSWVSTHKN------GR--TVLIAFDLHEESFRVIE----IPAKALARRSESELIVYSGRP 260 (376)
Q Consensus 193 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~------~~--~~il~fD~~~~~~~~i~----lP~~~~~~~~~~~l~~~~G~L 260 (376)
++.++..+.++.++|.+|-.++..+... .+ ..|++||+.++.|..-+ .|.+.. .-...+++|++
T Consensus 178 PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR----SHS~fvYng~~ 253 (392)
T KOG4693|consen 178 PPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR----SHSTFVYNGKM 253 (392)
T ss_pred CchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc----ccceEEEcceE
Confidence 3345558888999999999998764311 11 47999999999997752 233322 34457899999
Q ss_pred EEEEccCCC--CCeEEEEEeccCCCCCeEEEEEEc--CCCcccccccccccceeEEeecCCeEEEee
Q 017140 261 AIADHLLLE--DATMTIWVLDENDGDYWVQIKVFL--PEDYGEEILEEDIDYFVDCIGRNNELLLVP 323 (376)
Q Consensus 261 ~l~~~~~~~--~~~l~IW~l~~~~~~~W~~~~~~l--p~~~~~~~~~~~~~~~~~~~~~~g~ill~~ 323 (376)
+++...... ..--++|..+- .+..|.++.... |..-. .+ ..++ .+|+++++.
T Consensus 254 Y~FGGYng~ln~HfndLy~FdP-~t~~W~~I~~~Gk~P~aRR--------Rq-C~~v-~g~kv~LFG 309 (392)
T KOG4693|consen 254 YMFGGYNGTLNVHFNDLYCFDP-KTSMWSVISVRGKYPSARR--------RQ-CSVV-SGGKVYLFG 309 (392)
T ss_pred EEecccchhhhhhhcceeeccc-ccchheeeeccCCCCCccc--------ce-eEEE-ECCEEEEec
Confidence 999873211 22236888853 345899986543 33211 12 2233 478888874
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=97.61 E-value=0.0025 Score=59.50 Aligned_cols=219 Identities=14% Similarity=0.136 Sum_probs=122.8
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEE--EeecC----CCCCcEEEEEeCCCceEECc
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLN--SWAIP----GRDPEYRIFELGTNSWRPLK 191 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~--~~~~~----~~~~~~~vyss~~~~W~~~~ 191 (376)
.+|++|--+.+|+ .+.+|..+.++.. +.....++. .--+.+ +.... ......++|++.+++|+.+.
T Consensus 99 dLy~Yn~k~~eWk------k~~spn~P~pRss-hq~va~~s~-~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~ 170 (521)
T KOG1230|consen 99 DLYSYNTKKNEWK------KVVSPNAPPPRSS-HQAVAVPSN-ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLE 170 (521)
T ss_pred eeeEEecccccee------EeccCCCcCCCcc-ceeEEeccC-eEEEeccccCCcchhhhhhhhheeeeeeccchheeec
Confidence 6899999999999 5543433322211 222223322 111222 11111 13557899999999999986
Q ss_pred CC--CCccCCCcceEECceEEEEEecCCCCCC---ccEEEEEEcCCcceEEEecChhhhccCCccceEEe-CCeEEEEEc
Q 017140 192 GG--PNYYPQRESVCVDGFVYFRSWVSTHKNG---RTVLIAFDLHEESFRVIEIPAKALARRSESELIVY-SGRPAIADH 265 (376)
Q Consensus 192 ~~--~~~~~~~~~v~~~G~lyw~~~~~~~~~~---~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~-~G~L~l~~~ 265 (376)
.. |..+..+..|.....+.-.++-.+.... ..-+.+||+++-+|+.+..+...-......++.+. +|.++|...
T Consensus 171 ~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 171 FGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred cCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcc
Confidence 54 3344466667666666665554432211 13699999999999999654321111235566676 888888765
Q ss_pred cCC---------CCCeEEEEEeccCC----CCCeEEEE-EEcCCCcccccccccccceeEEeecCCeEEEeeccc-----
Q 017140 266 LLL---------EDATMTIWVLDEND----GDYWVQIK-VFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTV----- 326 (376)
Q Consensus 266 ~~~---------~~~~l~IW~l~~~~----~~~W~~~~-~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~----- 326 (376)
... ...+-++|.|+-.. +-.|+++. +-+++. . ..+ |-.++..++.-+++.--.
T Consensus 251 YsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPs-p--Rsg-----fsv~va~n~kal~FGGV~D~eee 322 (521)
T KOG1230|consen 251 YSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPS-P--RSG-----FSVAVAKNHKALFFGGVCDLEEE 322 (521)
T ss_pred hhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCC-C--CCc-----eeEEEecCCceEEecceeccccc
Confidence 321 14566899998432 12677773 223211 0 111 111222444433332100
Q ss_pred ------CCCcEEEEEeCCCCcEEEEEEeccCC
Q 017140 327 ------SDSVYVIHYDVVNRSMRRAEIFGLPE 352 (376)
Q Consensus 327 ------~~~~~l~~ydl~t~~~~~v~~~~~~~ 352 (376)
.--..|+.||+..++|.+-++++-.+
T Consensus 323 eEsl~g~F~NDLy~fdlt~nrW~~~qlq~~~S 354 (521)
T KOG1230|consen 323 EESLSGEFFNDLYFFDLTRNRWSEGQLQGKKS 354 (521)
T ss_pred chhhhhhhhhhhhheecccchhhHhhhccCCC
Confidence 01224899999999999888876543
No 29
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=2.3e-05 Score=70.16 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHhcCCCccccceeeeccccchhhccChhhH
Q 017140 9 SSSKPIPSEIIYDILTKLPIKSLMRFRCLSKLCSSYITAPSFA 51 (376)
Q Consensus 9 ~~~~~LP~Dll~~IL~rLP~~~l~r~r~VCK~W~~li~s~~F~ 51 (376)
-.+..||||+++.||+.|+.|+|.++..|||+|+++.++...-
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW 138 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW 138 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence 3467899999999999999999999999999999998886643
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=97.44 E-value=0.0026 Score=57.85 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=37.9
Q ss_pred CCCC----HHHHHHHhcCCCccccceeeeccccchhhccChhhHhh
Q 017140 12 KPIP----SEIIYDILTKLPIKSLMRFRCLSKLCSSYITAPSFAEL 53 (376)
Q Consensus 12 ~~LP----~Dll~~IL~rLP~~~l~r~r~VCK~W~~li~s~~F~~~ 53 (376)
..|| +++.+.||+.|...+|..|..|||+|+++++++-.-+.
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKk 121 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKK 121 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHH
Confidence 3589 99999999999999999999999999999999775544
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=97.29 E-value=0.019 Score=56.92 Aligned_cols=166 Identities=15% Similarity=0.117 Sum_probs=102.4
Q ss_pred CCCcEEEEEeCCCceEECcC---CCCccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEecChhhhccCC
Q 017140 173 RDPEYRIFELGTNSWRPLKG---GPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRS 249 (376)
Q Consensus 173 ~~~~~~vyss~~~~W~~~~~---~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~ 249 (376)
....++.|+..+++|+.... +|+.+..+..+.++.++|..++.......-..+.+||+++.+|..+......-....
T Consensus 137 ~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~ 216 (482)
T KOG0379|consen 137 NLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRY 216 (482)
T ss_pred ChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCC
Confidence 35689999999999987643 344555777788888899888765433122589999999999999854322211112
Q ss_pred ccceEEeCCeEEEEEccCCC-CCeEEEEEeccCCCCCeEEEEE--EcCCCcccccccccccceeEEeecCCeEEEee-cc
Q 017140 250 ESELIVYSGRPAIADHLLLE-DATMTIWVLDENDGDYWVQIKV--FLPEDYGEEILEEDIDYFVDCIGRNNELLLVP-QT 325 (376)
Q Consensus 250 ~~~l~~~~G~L~l~~~~~~~-~~~l~IW~l~~~~~~~W~~~~~--~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~-~~ 325 (376)
.-.++..+++++++...... ..-=++|.++-. ...|.+... .+|.. -+. ...+.....+++++ ..
T Consensus 217 gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~-~~~W~~~~~~g~~p~~----R~~------h~~~~~~~~~~l~gG~~ 285 (482)
T KOG0379|consen 217 GHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLS-TWEWKLLPTGGDLPSP----RSG------HSLTVSGDHLLLFGGGT 285 (482)
T ss_pred CceEEEECCeEEEEeccccCCceecceEeeecc-cceeeeccccCCCCCC----cce------eeeEEECCEEEEEcCCc
Confidence 44467778999998774422 233478999633 457885532 23432 111 11122122233332 21
Q ss_pred cC---CCcEEEEEeCCCCcEEEEEEec
Q 017140 326 VS---DSVYVIHYDVVNRSMRRAEIFG 349 (376)
Q Consensus 326 ~~---~~~~l~~ydl~t~~~~~v~~~~ 349 (376)
.. ....++.||.+++.|.++...+
T Consensus 286 ~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 286 DPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred ccccccccccccccccccceeeeeccc
Confidence 11 2346899999999999998666
No 32
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=96.96 E-value=0.045 Score=54.20 Aligned_cols=161 Identities=11% Similarity=0.094 Sum_probs=98.8
Q ss_pred cEEEEEeCCCceEECcCC---CCccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEec----ChhhhccC
Q 017140 176 EYRIFELGTNSWRPLKGG---PNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEI----PAKALARR 248 (376)
Q Consensus 176 ~~~vyss~~~~W~~~~~~---~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~l----P~~~~~~~ 248 (376)
.+++++..+..|...... |........+.++..||.+++..........|-.||+.+.+|..+.. |+...
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~--- 165 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRA--- 165 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcc---
Confidence 588888888888764322 22333677889999999999876311112479999999999998742 33322
Q ss_pred CccceEEeCCeEEEEEccCCCC-CeEEEEEeccCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeeccc-
Q 017140 249 SESELIVYSGRPAIADHLLLED-ATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTV- 326 (376)
Q Consensus 249 ~~~~l~~~~G~L~l~~~~~~~~-~~l~IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~- 326 (376)
.-.++..+.+|++....+... ..-++|+++- ....|.++.+..+..-. ..+ . ..++ .++.++++.-..
T Consensus 166 -~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~-~~~~W~~~~~~g~~P~p--R~g----H-~~~~-~~~~~~v~gG~~~ 235 (482)
T KOG0379|consen 166 -GHSATVVGTKLVVFGGIGGTGDSLNDLHIYDL-ETSTWSELDTQGEAPSP--RYG----H-AMVV-VGNKLLVFGGGDD 235 (482)
T ss_pred -cceEEEECCEEEEECCccCcccceeeeeeecc-ccccceecccCCCCCCC--CCC----c-eEEE-ECCeEEEEecccc
Confidence 344566678999988755444 5678999963 34579998544432111 111 1 1112 233333332111
Q ss_pred --CCCcEEEEEeCCCCcEEEEEEec
Q 017140 327 --SDSVYVIHYDVVNRSMRRAEIFG 349 (376)
Q Consensus 327 --~~~~~l~~ydl~t~~~~~v~~~~ 349 (376)
.--..++.+|+.+.+|+++...|
T Consensus 236 ~~~~l~D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 236 GDVYLNDVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred CCceecceEeeecccceeeeccccC
Confidence 01235899999999998766544
No 33
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=96.60 E-value=0.14 Score=48.21 Aligned_cols=155 Identities=11% Similarity=0.163 Sum_probs=94.5
Q ss_pred CCcEEEEEeCCCceEECcCC--CCccCCCcceEEC-ceEEEEEecCCCCCC-c----cEEEEEEcCCcceEEEecChhhh
Q 017140 174 DPEYRIFELGTNSWRPLKGG--PNYYPQRESVCVD-GFVYFRSWVSTHKNG-R----TVLIAFDLHEESFRVIEIPAKAL 245 (376)
Q Consensus 174 ~~~~~vyss~~~~W~~~~~~--~~~~~~~~~v~~~-G~lyw~~~~~~~~~~-~----~~il~fD~~~~~~~~i~lP~~~~ 245 (376)
...+++|+.+.++|+.+..+ |+.+..+.+|.+- |.+|..++....+.+ + .-+-.||+.+.+|..+.++....
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS 176 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS 176 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC
Confidence 34678999999999998655 4444555666655 766665555433221 1 36899999999999998877554
Q ss_pred ccCCccceEEeCCeEEEEEccCCCCC-e---EEEEEeccCCCCCeEEEEEEc--CCCcccccccccccceeEEeecCCeE
Q 017140 246 ARRSESELIVYSGRPAIADHLLLEDA-T---MTIWVLDENDGDYWVQIKVFL--PEDYGEEILEEDIDYFVDCIGRNNEL 319 (376)
Q Consensus 246 ~~~~~~~l~~~~G~L~l~~~~~~~~~-~---l~IW~l~~~~~~~W~~~~~~l--p~~~~~~~~~~~~~~~~~~~~~~g~i 319 (376)
.. ..-+++....+|.++...+.... . =++|+.+ .+.-.|+++.+.. |.. .-+ +. + .+..+|.|
T Consensus 177 ~R-SGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~Fd-LdtykW~Klepsga~Ptp----RSG---cq-~-~vtpqg~i 245 (521)
T KOG1230|consen 177 PR-SGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFD-LDTYKWSKLEPSGAGPTP----RSG---CQ-F-SVTPQGGI 245 (521)
T ss_pred CC-ccceeEEeeeeEEEEcceecCCCceEEeeeeEEEe-ccceeeeeccCCCCCCCC----CCc---ce-E-EecCCCcE
Confidence 21 24557888999998876432222 1 2577774 3355799986433 432 112 22 2 22246777
Q ss_pred EEeeccc-----------CCCcEEEEEeCCC
Q 017140 320 LLVPQTV-----------SDSVYVIHYDVVN 339 (376)
Q Consensus 320 ll~~~~~-----------~~~~~l~~ydl~t 339 (376)
++..-|. .....++..++++
T Consensus 246 ~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~ 276 (521)
T KOG1230|consen 246 VVYGGYSKQRVKKDVDKGTRHSDMFLLKPED 276 (521)
T ss_pred EEEcchhHhhhhhhhhcCceeeeeeeecCCc
Confidence 7654211 1122478888888
No 34
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.54 E-value=0.0031 Score=56.95 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHhcCCC-----ccccceeeeccccchhhccChhhHhhh
Q 017140 11 SKPIPSEIIYDILTKLP-----IKSLMRFRCLSKLCSSYITAPSFAELH 54 (376)
Q Consensus 11 ~~~LP~Dll~~IL~rLP-----~~~l~r~r~VCK~W~~li~s~~F~~~h 54 (376)
+..||+|+|.+||.++= ..+|.++.+|||.|+....+|.|-+.-
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 46799999999998765 599999999999999999999988773
No 35
>PF13964 Kelch_6: Kelch motif
Probab=95.39 E-value=0.034 Score=36.26 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=32.1
Q ss_pred CCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEe
Q 017140 199 QRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIE 239 (376)
Q Consensus 199 ~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~ 239 (376)
...+|.++|.||.+++..........+..||+++.+|+.++
T Consensus 4 ~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~ 44 (50)
T PF13964_consen 4 GHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP 44 (50)
T ss_pred cCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence 34578999999999987652211258999999999999984
No 36
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.03 E-value=2 Score=38.55 Aligned_cols=130 Identities=14% Similarity=0.181 Sum_probs=82.5
Q ss_pred CCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceE-EEecChhhhc--------cCCccceEEeCCeEEEEEccCCC
Q 017140 199 QRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFR-VIEIPAKALA--------RRSESELIVYSGRPAIADHLLLE 269 (376)
Q Consensus 199 ~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~~~--------~~~~~~l~~~~G~L~l~~~~~~~ 269 (376)
....|+.||.+|+-.... ..|+.||+.++.-. ...||..... ....+.+.+-+..|.++-.....
T Consensus 71 GtG~vVYngslYY~~~~s------~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~ 144 (250)
T PF02191_consen 71 GTGHVVYNGSLYYNKYNS------RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN 144 (250)
T ss_pred cCCeEEECCcEEEEecCC------ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC
Confidence 556788999999988743 38999999999988 7888876542 12357778888899988664333
Q ss_pred CCeEEEEEeccCC--C-CCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccC-CCcEEEEEeCCCCcEEEE
Q 017140 270 DATMTIWVLDEND--G-DYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVS-DSVYVIHYDVVNRSMRRA 345 (376)
Q Consensus 270 ~~~l~IW~l~~~~--~-~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~-~~~~l~~ydl~t~~~~~v 345 (376)
...|.|=.|+... . +.|.- .++.. .+++ . + ++ -|.++.+.+... ...--+.||+.+++-+.+
T Consensus 145 ~g~ivvskld~~tL~v~~tw~T---~~~k~----~~~n---a-F-mv--CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~ 210 (250)
T PF02191_consen 145 NGNIVVSKLDPETLSVEQTWNT---SYPKR----SAGN---A-F-MV--CGVLYATDSYDTRDTEIFYAFDTYTGKEEDV 210 (250)
T ss_pred CCcEEEEeeCcccCceEEEEEe---ccCch----hhcc---e-e-eE--eeEEEEEEECCCCCcEEEEEEECCCCceece
Confidence 4467777776321 1 24542 22322 2331 2 2 22 244444433221 244568999999998877
Q ss_pred EEe
Q 017140 346 EIF 348 (376)
Q Consensus 346 ~~~ 348 (376)
.|.
T Consensus 211 ~i~ 213 (250)
T PF02191_consen 211 SIP 213 (250)
T ss_pred eee
Confidence 765
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=94.81 E-value=0.12 Score=32.89 Aligned_cols=40 Identities=10% Similarity=0.195 Sum_probs=32.2
Q ss_pred CcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEe
Q 017140 200 RESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIE 239 (376)
Q Consensus 200 ~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~ 239 (376)
..++.++|.+|.+++..........+..||+.+.+|..++
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 4578999999999987763332368999999999999873
No 38
>smart00284 OLF Olfactomedin-like domains.
Probab=93.98 E-value=4.4 Score=36.39 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=80.8
Q ss_pred CCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEE-EecChhhhc--------cCCccceEEeCCeEEEEEccCCC
Q 017140 199 QRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRV-IEIPAKALA--------RRSESELIVYSGRPAIADHLLLE 269 (376)
Q Consensus 199 ~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~-i~lP~~~~~--------~~~~~~l~~~~G~L~l~~~~~~~ 269 (376)
....|+.||.+|+..... ..|+.||+.+++-.. -.+|..... ....+.|++-+..|.++-.....
T Consensus 76 GtG~VVYngslYY~~~~s------~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~ 149 (255)
T smart00284 76 GTGVVVYNGSLYFNKFNS------HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN 149 (255)
T ss_pred cccEEEECceEEEEecCC------ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC
Confidence 566799999999966543 389999999999864 457753211 12367888889999998664334
Q ss_pred CCeEEEEEeccCC---CCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeec-ccCCCcEEEEEeCCCCcEEEE
Q 017140 270 DATMTIWVLDEND---GDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQ-TVSDSVYVIHYDVVNRSMRRA 345 (376)
Q Consensus 270 ~~~l~IW~l~~~~---~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~-~~~~~~~l~~ydl~t~~~~~v 345 (376)
...|.|-.|+... .+.|.- ..|.. ..++ . + ++| |.++.+.+ ......-.+.||..|++-+.+
T Consensus 150 ~g~ivvSkLnp~tL~ve~tW~T---~~~k~----sa~n---a-F-mvC--GvLY~~~s~~~~~~~I~yayDt~t~~~~~~ 215 (255)
T smart00284 150 AGKIVISKLNPATLTIENTWIT---TYNKR----SASN---A-F-MIC--GILYVTRSLGSKGEKVFYAYDTNTGKEGHL 215 (255)
T ss_pred CCCEEEEeeCcccceEEEEEEc---CCCcc----cccc---c-E-EEe--eEEEEEccCCCCCcEEEEEEECCCCcccee
Confidence 5778888887421 123433 22222 3332 2 2 232 44444432 122445579999999987776
Q ss_pred EEe
Q 017140 346 EIF 348 (376)
Q Consensus 346 ~~~ 348 (376)
.|.
T Consensus 216 ~i~ 218 (255)
T smart00284 216 DIP 218 (255)
T ss_pred eee
Confidence 654
No 39
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=93.61 E-value=1.5 Score=42.63 Aligned_cols=211 Identities=14% Similarity=0.156 Sum_probs=102.5
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCCCCccce-e--EEEeEeCCCCcEEEEE-EeecCCCCCcEEEEEeCCC--ceEECc
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSVNSTYFC-V--NSFGFDPVSKKYKVLN-SWAIPGRDPEYRIFELGTN--SWRPLK 191 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~-~--~~l~~d~~~~~ykvv~-~~~~~~~~~~~~vyss~~~--~W~~~~ 191 (376)
++.|+|-.|+||. + |........ . +||.+|. ....|++ +-+++ .+.=+.|.++.. .|+.+.
T Consensus 58 ELHvYNTatnqWf-------~--PavrGDiPpgcAA~GfvcdG--trilvFGGMvEYG--kYsNdLYELQasRWeWkrlk 124 (830)
T KOG4152|consen 58 ELHVYNTATNQWF-------A--PAVRGDIPPGCAAFGFVCDG--TRILVFGGMVEYG--KYSNDLYELQASRWEWKRLK 124 (830)
T ss_pred hhhhhccccceee-------c--chhcCCCCCchhhcceEecC--ceEEEEccEeeec--cccchHHHhhhhhhhHhhcC
Confidence 6899999999997 3 444322211 1 4454443 3444444 55554 555667777765 556654
Q ss_pred CCC-----CccC--CCcceEECceEEEEEecCCCC-----CCc-----cEEEEEEcCCcc--eEEE----ecChhhhccC
Q 017140 192 GGP-----NYYP--QRESVCVDGFVYFRSWVSTHK-----NGR-----TVLIAFDLHEES--FRVI----EIPAKALARR 248 (376)
Q Consensus 192 ~~~-----~~~~--~~~~v~~~G~lyw~~~~~~~~-----~~~-----~~il~fD~~~~~--~~~i----~lP~~~~~~~ 248 (376)
..+ +..+ .+.-+.+++++|.+++..+.. +-+ .+++-+-..+.. |... .+|.....
T Consensus 125 p~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRES-- 202 (830)
T KOG4152|consen 125 PKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRES-- 202 (830)
T ss_pred CCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCccc--
Confidence 332 2222 455577788999998643211 101 344444444443 3221 23444331
Q ss_pred CccceEEe--CC---eEEEEEccCCCCCeEEEEEeccCCCCCeEEEEEE----cCCCccc-ccccccccceeEEeecCCe
Q 017140 249 SESELIVY--SG---RPAIADHLLLEDATMTIWVLDENDGDYWVQIKVF----LPEDYGE-EILEEDIDYFVDCIGRNNE 318 (376)
Q Consensus 249 ~~~~l~~~--~G---~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~~~----lp~~~~~-~~~~~~~~~~~~~~~~~g~ 318 (376)
+..++-+ +. ++++.... +..+-=++|.|+ .+.-.|.+.... ||...+. -..++ . +.+. .|-
T Consensus 203 -HTAViY~eKDs~~skmvvyGGM-~G~RLgDLW~Ld-l~Tl~W~kp~~~G~~PlPRSLHsa~~IGn---K-Myvf--GGW 273 (830)
T KOG4152|consen 203 -HTAVIYTEKDSKKSKMVVYGGM-SGCRLGDLWTLD-LDTLTWNKPSLSGVAPLPRSLHSATTIGN---K-MYVF--GGW 273 (830)
T ss_pred -ceeEEEEeccCCcceEEEEccc-ccccccceeEEe-cceeecccccccCCCCCCcccccceeecc---e-eEEe--cce
Confidence 2222221 21 44443321 122333699996 345689986322 3321110 01121 0 1111 222
Q ss_pred EEEeec------cc---CCCcEEEEEeCCCCcEEEEEEeccCC
Q 017140 319 LLLVPQ------TV---SDSVYVIHYDVVNRSMRRAEIFGLPE 352 (376)
Q Consensus 319 ill~~~------~~---~~~~~l~~ydl~t~~~~~v~~~~~~~ 352 (376)
+=++.. +. .....+-+.|+.+.+|+.+-.....+
T Consensus 274 VPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed 316 (830)
T KOG4152|consen 274 VPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLED 316 (830)
T ss_pred eeeeccccccccccceeeeccceeeeeecchheeeeeeccccc
Confidence 222221 00 11235889999999999987654443
No 40
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.49 E-value=7.7 Score=37.48 Aligned_cols=165 Identities=17% Similarity=0.206 Sum_probs=89.0
Q ss_pred CCcEEEEEEeecCCCCCcEEEEEeCCC-----ceEECcCCCCccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCc
Q 017140 159 SKKYKVLNSWAIPGRDPEYRIFELGTN-----SWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEE 233 (376)
Q Consensus 159 ~~~ykvv~~~~~~~~~~~~~vyss~~~-----~W~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~ 233 (376)
++.|.++....... ...+.+.+...+ .|+.+....... ....-..++.+|.++.... .. ..|++.|+++-
T Consensus 237 d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~~~~-~~~v~~~~~~~yi~Tn~~a-~~--~~l~~~~l~~~ 311 (414)
T PF02897_consen 237 DGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPREDGV-EYYVDHHGDRLYILTNDDA-PN--GRLVAVDLADP 311 (414)
T ss_dssp TSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEEEETTEEEEEE-TT--TT---EEEEEETTST
T ss_pred cccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCCCCce-EEEEEccCCEEEEeeCCCC-CC--cEEEEeccccc
Confidence 45665555333221 256666676664 677654322110 1112344777888776432 22 49999999875
Q ss_pred c---eEEEecChhhhccCCccceEEeCCeEEEEEccCCCCCeEEEEEeccCCCCCeEEEEEEcCCCccccccccccccee
Q 017140 234 S---FRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFV 310 (376)
Q Consensus 234 ~---~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~ 310 (376)
. |..+=.|..... ....+...++.|.+....+ ....|.++.+. ..|....+.+|.. + . +
T Consensus 312 ~~~~~~~~l~~~~~~~--~l~~~~~~~~~Lvl~~~~~-~~~~l~v~~~~----~~~~~~~~~~p~~-g---------~-v 373 (414)
T PF02897_consen 312 SPAEWWTVLIPEDEDV--SLEDVSLFKDYLVLSYREN-GSSRLRVYDLD----DGKESREIPLPEA-G---------S-V 373 (414)
T ss_dssp SGGGEEEEEE--SSSE--EEEEEEEETTEEEEEEEET-TEEEEEEEETT-----TEEEEEEESSSS-S---------E-E
T ss_pred ccccceeEEcCCCCce--eEEEEEEECCEEEEEEEEC-CccEEEEEECC----CCcEEeeecCCcc-e---------E-E
Confidence 4 664333332210 1223345678888776621 23445555543 3577766677743 1 1 2
Q ss_pred EEee---cCCeEEEeecccCCCcEEEEEeCCCCcEEEEE
Q 017140 311 DCIG---RNNELLLVPQTVSDSVYVIHYDVVNRSMRRAE 346 (376)
Q Consensus 311 ~~~~---~~g~ill~~~~~~~~~~l~~ydl~t~~~~~v~ 346 (376)
..+. ...+++|..++......++.||+++++++.+.
T Consensus 374 ~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 374 SGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred eccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 2222 45557776555556778999999999998774
No 41
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=92.33 E-value=0.35 Score=31.27 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=31.7
Q ss_pred CCcceEECceEEEEEec--CCCCCCccEEEEEEcCCcceEEEec
Q 017140 199 QRESVCVDGFVYFRSWV--STHKNGRTVLIAFDLHEESFRVIEI 240 (376)
Q Consensus 199 ~~~~v~~~G~lyw~~~~--~~~~~~~~~il~fD~~~~~~~~i~l 240 (376)
.+.++..+|+||.+++. .........+..||+++.+|..++.
T Consensus 4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 35678999999999988 2222222589999999999998753
No 42
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.25 E-value=7.8 Score=39.01 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHhcCCCccccceeeeccccchhhccChhhHhh
Q 017140 10 SSKPIPSEIIYDILTKLPIKSLMRFRCLSKLCSSYITAPSFAEL 53 (376)
Q Consensus 10 ~~~~LP~Dll~~IL~rLP~~~l~r~r~VCK~W~~li~s~~F~~~ 53 (376)
-+..||.++...||..|+.+++++++.||+.|+.+..+.....+
T Consensus 107 fi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~ 150 (537)
T KOG0274|consen 107 FLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWR 150 (537)
T ss_pred hhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhh
Confidence 45679999999999999999999999999999999998777665
No 43
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=90.71 E-value=7.7 Score=34.41 Aligned_cols=143 Identities=16% Similarity=0.180 Sum_probs=83.4
Q ss_pred ceEECcCCCCccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcc-eEEEecChhhhc--------cCCccceEEe
Q 017140 186 SWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEES-FRVIEIPAKALA--------RRSESELIVY 256 (376)
Q Consensus 186 ~W~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~-~~~i~lP~~~~~--------~~~~~~l~~~ 256 (376)
.|...-..|........|+.+|.+|+..... ..|+.||+.++. -....+|..... ....+.+++-
T Consensus 57 ~~~~~~~lp~~~~gTg~VVynGs~yynk~~t------~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avD 130 (249)
T KOG3545|consen 57 RKAEKYRLPYSWDGTGHVVYNGSLYYNKAGT------RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVD 130 (249)
T ss_pred CcceEEeCCCCccccceEEEcceEEeeccCC------cceEEEEeecceeeeeeeccccccCCCcccccCCCccccceec
Confidence 3433333333333566799999999987544 389999999843 344455544321 1235778888
Q ss_pred CCeEEEEEccCCCCCeEEEEEeccC--CC-CCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccCCCcEE-
Q 017140 257 SGRPAIADHLLLEDATMTIWVLDEN--DG-DYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYV- 332 (376)
Q Consensus 257 ~G~L~l~~~~~~~~~~l~IW~l~~~--~~-~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~l- 332 (376)
+..|.++-........+.|-.|+.. +. +.|.- .++.. ..++ . + ++| |.++.+.+.......+
T Consensus 131 E~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T---~~~k~----~~~~---a-F-~iC--GvLY~v~S~~~~~~~i~ 196 (249)
T KOG3545|consen 131 ENGLWVIYATPENAGTIVLSKLDPETLEVERTWNT---TLPKR----SAGN---A-F-MIC--GVLYVVHSYNCTHTQIS 196 (249)
T ss_pred ccceeEEecccccCCcEEeeccCHHHhheeeeecc---ccCCC----CcCc---e-E-EEe--eeeEEEeccccCCceEE
Confidence 8888888664434566666777641 11 24532 23322 2331 2 2 232 4455554433334444
Q ss_pred EEEeCCCCcEEEEEEe
Q 017140 333 IHYDVVNRSMRRAEIF 348 (376)
Q Consensus 333 ~~ydl~t~~~~~v~~~ 348 (376)
+.||..+++-+.+.+.
T Consensus 197 yaydt~~~~~~~~~ip 212 (249)
T KOG3545|consen 197 YAYDTTTGTQERIDLP 212 (249)
T ss_pred EEEEcCCCceeccccc
Confidence 7999999999888765
No 44
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=89.35 E-value=9.1 Score=36.97 Aligned_cols=171 Identities=18% Similarity=0.213 Sum_probs=94.8
Q ss_pred cCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCC-cEEEEEEeecCCCCCcEEEEEeCCCceEE-CcCCCCccCCC
Q 017140 123 NPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSK-KYKVLNSWAIPGRDPEYRIFELGTNSWRP-LKGGPNYYPQR 200 (376)
Q Consensus 123 NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~-~ykvv~~~~~~~~~~~~~vyss~~~~W~~-~~~~~~~~~~~ 200 (376)
+|-++.|. ..+.|+.......+..+.+.|... +|-|.. ...+.+|++.+.+=+. +...- .-...
T Consensus 8 t~e~~~w~------~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~-------S~rvqly~~~~~~~~k~~srFk-~~v~s 73 (487)
T KOG0310|consen 8 TPEIRYWR------QETFPPVHKEHNSVSSLCFSPKHPYDFAVTS-------SVRVQLYSSVTRSVRKTFSRFK-DVVYS 73 (487)
T ss_pred Cccchhhh------hhcccccccccCcceeEecCCCCCCceEEec-------ccEEEEEecchhhhhhhHHhhc-cceeE
Confidence 45566666 554455444334446677777544 443333 5679999998875332 11110 00022
Q ss_pred cceEECceEEEEEecCCCCCCccEEEEEEcCCcce-EEE---ecChhhhccCCccceEEeCCeEEEEEccCCCCCeEEEE
Q 017140 201 ESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESF-RVI---EIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIW 276 (376)
Q Consensus 201 ~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~-~~i---~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW 276 (376)
.....+|.+...+...+ .+=.||+.+... +.+ +.|... ......++.+.+.+. ++....+|
T Consensus 74 ~~fR~DG~LlaaGD~sG------~V~vfD~k~r~iLR~~~ah~apv~~------~~f~~~d~t~l~s~s---Dd~v~k~~ 138 (487)
T KOG0310|consen 74 VDFRSDGRLLAAGDESG------HVKVFDMKSRVILRQLYAHQAPVHV------TKFSPQDNTMLVSGS---DDKVVKYW 138 (487)
T ss_pred EEeecCCeEEEccCCcC------cEEEeccccHHHHHHHhhccCceeE------EEecccCCeEEEecC---CCceEEEE
Confidence 23445699988876653 799999665221 222 333332 233445666666655 77889999
Q ss_pred EeccCCCCCeEEEEEEcCCCcccccccccccceeEEee---cCCeEEEeecccCCCcEEEEEeCCCCc
Q 017140 277 VLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIG---RNNELLLVPQTVSDSVYVIHYDVVNRS 341 (376)
Q Consensus 277 ~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~---~~g~ill~~~~~~~~~~l~~ydl~t~~ 341 (376)
.+.... ++..+....+ ++++.. .++-|++... -+..+-.||.++.+
T Consensus 139 d~s~a~----v~~~l~~htD------------YVR~g~~~~~~~hivvtGs---YDg~vrl~DtR~~~ 187 (487)
T KOG0310|consen 139 DLSTAY----VQAELSGHTD------------YVRCGDISPANDHIVVTGS---YDGKVRLWDTRSLT 187 (487)
T ss_pred EcCCcE----EEEEecCCcc------------eeEeeccccCCCeEEEecC---CCceEEEEEeccCC
Confidence 997431 3222222222 244443 4555777643 36778889988886
No 45
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.98 E-value=14 Score=33.08 Aligned_cols=152 Identities=14% Similarity=0.153 Sum_probs=82.6
Q ss_pred CCcEEEEEeCCCceEECcCCCCccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCC----cceEEEecChhhhccCC
Q 017140 174 DPEYRIFELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHE----ESFRVIEIPAKALARRS 249 (376)
Q Consensus 174 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~----~~~~~i~lP~~~~~~~~ 249 (376)
....-+|+..+++++.+......+.....+.-||.+.-.++..++. ..+-.|++.+ ..|... +.......+
T Consensus 45 ~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~---~~ir~~~p~~~~~~~~w~e~--~~~m~~~RW 119 (243)
T PF07250_consen 45 PAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGN---KAIRIFTPCTSDGTCDWTES--PNDMQSGRW 119 (243)
T ss_pred eEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccc---cceEEEecCCCCCCCCceEC--cccccCCCc
Confidence 3456789999999998876655444556677788888766654422 3677788754 445443 322222223
Q ss_pred ccceEE-eCCeEEEEEccCCCCCeEEEEEeccCCCC--CeEEEEEEcCCCcccccccccccceeEE-eecCCeEEEeecc
Q 017140 250 ESELIV-YSGRPAIADHLLLEDATMTIWVLDENDGD--YWVQIKVFLPEDYGEEILEEDIDYFVDC-IGRNNELLLVPQT 325 (376)
Q Consensus 250 ~~~l~~-~~G~L~l~~~~~~~~~~l~IW~l~~~~~~--~W~~~~~~lp~~~~~~~~~~~~~~~~~~-~~~~g~ill~~~~ 325 (376)
...... -+|++.++... .....+.|--+..... .|.... .... .... ..|..+ +-.+|+|++..
T Consensus 120 YpT~~~L~DG~vlIvGG~--~~~t~E~~P~~~~~~~~~~~~~l~-~~~~-----~~~~--nlYP~~~llPdG~lFi~a-- 187 (243)
T PF07250_consen 120 YPTATTLPDGRVLIVGGS--NNPTYEFWPPKGPGPGPVTLPFLS-QTSD-----TLPN--NLYPFVHLLPDGNLFIFA-- 187 (243)
T ss_pred cccceECCCCCEEEEeCc--CCCcccccCCccCCCCceeeecch-hhhc-----cCcc--ccCceEEEcCCCCEEEEE--
Confidence 333333 37899888874 3444555533221111 121111 0000 0010 111112 22699999975
Q ss_pred cCCCcEEEEEeCCCCcE-EEE
Q 017140 326 VSDSVYVIHYDVVNRSM-RRA 345 (376)
Q Consensus 326 ~~~~~~l~~ydl~t~~~-~~v 345 (376)
...-..||.+++++ +.+
T Consensus 188 ---n~~s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 188 ---NRGSIIYDYKTNTVVRTL 205 (243)
T ss_pred ---cCCcEEEeCCCCeEEeeC
Confidence 33567789999976 444
No 46
>smart00612 Kelch Kelch domain.
Probab=87.80 E-value=0.63 Score=29.13 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=24.3
Q ss_pred CCcEEEEEeCCCceEECcCCCCccCCCcceEECc
Q 017140 174 DPEYRIFELGTNSWRPLKGGPNYYPQRESVCVDG 207 (376)
Q Consensus 174 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~v~~~G 207 (376)
...+++|+.++++|+..+.++.......++.++|
T Consensus 14 ~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred eeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 5678999999999999887665444444455543
No 47
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=87.37 E-value=20 Score=31.71 Aligned_cols=184 Identities=18% Similarity=0.250 Sum_probs=100.9
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEEEeecCCCCCcEEEEEeCCCceEECcCCC---
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTNSWRPLKGGP--- 194 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~--- 194 (376)
+++.++|.+++.. .+..|. ..++.++...+.+.|.. .....+++..++.++.+...+
T Consensus 23 ~i~~~~~~~~~~~------~~~~~~-------~~G~~~~~~~g~l~v~~-------~~~~~~~d~~~g~~~~~~~~~~~~ 82 (246)
T PF08450_consen 23 RIYRVDPDTGEVE------VIDLPG-------PNGMAFDRPDGRLYVAD-------SGGIAVVDPDTGKVTVLADLPDGG 82 (246)
T ss_dssp EEEEEETTTTEEE------EEESSS-------EEEEEEECTTSEEEEEE-------TTCEEEEETTTTEEEEEEEEETTC
T ss_pred EEEEEECCCCeEE------EEecCC-------CceEEEEccCCEEEEEE-------cCceEEEecCCCcEEEEeeccCCC
Confidence 8899999999887 542133 16677774344443322 335577788999887765442
Q ss_pred --CccCCCcceEECceEEEEEecCCCCCCc--cEEEEEEcCCcceEEE----ecChhhhccCCccceEEeCC-eEEEEEc
Q 017140 195 --NYYPQRESVCVDGFVYFRSWVSTHKNGR--TVLIAFDLHEESFRVI----EIPAKALARRSESELIVYSG-RPAIADH 265 (376)
Q Consensus 195 --~~~~~~~~v~~~G~lyw~~~~~~~~~~~--~~il~fD~~~~~~~~i----~lP~~~~~~~~~~~l~~~~G-~L~l~~~ 265 (376)
...+..-.+--+|.+|............ ..|..+|.+ .+...+ ..|... ...-+| .|++...
T Consensus 83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi--------~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGI--------AFSPDGKTLYVADS 153 (246)
T ss_dssp SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEE--------EEETTSSEEEEEET
T ss_pred cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccce--------EECCcchheeeccc
Confidence 1112333444578877776543221111 379999999 444443 222221 122345 5777766
Q ss_pred cCCCCCeEEEEEeccC-CCCCeEEEE--EEcCCCcccccccccccceeE--EeecCCeEEEeecccCCCcEEEEEeCCCC
Q 017140 266 LLLEDATMTIWVLDEN-DGDYWVQIK--VFLPEDYGEEILEEDIDYFVD--CIGRNNELLLVPQTVSDSVYVIHYDVVNR 340 (376)
Q Consensus 266 ~~~~~~~l~IW~l~~~-~~~~W~~~~--~~lp~~~~~~~~~~~~~~~~~--~~~~~g~ill~~~~~~~~~~l~~ydl~t~ 340 (376)
.... ||.++-. +...+.... +.++... + . +. .++.+|.|++... ...+|..||++.+
T Consensus 154 ---~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~-----g----~-pDG~~vD~~G~l~va~~---~~~~I~~~~p~G~ 215 (246)
T PF08450_consen 154 ---FNGR--IWRFDLDADGGELSNRRVFIDFPGGP-----G----Y-PDGLAVDSDGNLWVADW---GGGRIVVFDPDGK 215 (246)
T ss_dssp ---TTTE--EEEEEEETTTCCEEEEEEEEE-SSSS-----C----E-EEEEEEBTTS-EEEEEE---TTTEEEEEETTSC
T ss_pred ---ccce--eEEEeccccccceeeeeeEEEcCCCC-----c----C-CCcceEcCCCCEEEEEc---CCCEEEEECCCcc
Confidence 3344 6666532 223465432 3444321 1 1 22 2337888877542 5678999999977
Q ss_pred cEEEEEEe
Q 017140 341 SMRRAEIF 348 (376)
Q Consensus 341 ~~~~v~~~ 348 (376)
.+++|...
T Consensus 216 ~~~~i~~p 223 (246)
T PF08450_consen 216 LLREIELP 223 (246)
T ss_dssp EEEEEE-S
T ss_pred EEEEEcCC
Confidence 78888765
No 48
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=86.76 E-value=5.6 Score=31.63 Aligned_cols=72 Identities=18% Similarity=0.270 Sum_probs=49.0
Q ss_pred EEEEEEcCCc--ceEEEecChhhhcc----------CCccceEEeCCeEEEEEccCC-------CCCeEEEEEeccC--C
Q 017140 224 VLIAFDLHEE--SFRVIEIPAKALAR----------RSESELIVYSGRPAIADHLLL-------EDATMTIWVLDEN--D 282 (376)
Q Consensus 224 ~il~fD~~~~--~~~~i~lP~~~~~~----------~~~~~l~~~~G~L~l~~~~~~-------~~~~l~IW~l~~~--~ 282 (376)
.|+..|+-.+ .++.|+||...... .....+...+|+|-++..... ....+.+|.|+.. +
T Consensus 7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~ 86 (131)
T PF07762_consen 7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS 86 (131)
T ss_pred CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence 6888898655 67889999765311 123456678999998876432 2457999999985 4
Q ss_pred CCCeEEEE-EEcCC
Q 017140 283 GDYWVQIK-VFLPE 295 (376)
Q Consensus 283 ~~~W~~~~-~~lp~ 295 (376)
...|.+-. +.+..
T Consensus 87 ~~~W~~d~~v~~~d 100 (131)
T PF07762_consen 87 SWEWKKDCEVDLSD 100 (131)
T ss_pred CCCEEEeEEEEhhh
Confidence 55899873 44433
No 49
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=86.26 E-value=22 Score=30.97 Aligned_cols=141 Identities=17% Similarity=0.165 Sum_probs=77.1
Q ss_pred cEEEEEeCCC--ceEECcCCCCccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceE-EEecChhhhccCCccc
Q 017140 176 EYRIFELGTN--SWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFR-VIEIPAKALARRSESE 252 (376)
Q Consensus 176 ~~~vyss~~~--~W~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~~~~~~~~~ 252 (376)
.+..++..+| .|+.--..........++..+|.+|..... ..|.++|..+++-. ..+++.... ..
T Consensus 4 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~----~~- 71 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGD-------GNLYALDAKTGKVLWRFDLPGPIS----GA- 71 (238)
T ss_dssp EEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETT-------SEEEEEETTTSEEEEEEECSSCGG----SG-
T ss_pred EEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCC-------CEEEEEECCCCCEEEEeecccccc----ce-
Confidence 5677787777 688732111110011245578888887433 38999998665543 345544433 11
Q ss_pred eEEeCCeEEEEEccCCCCCeEEEEEec-cCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccCCCcE
Q 017140 253 LIVYSGRPAIADHLLLEDATMTIWVLD-ENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVY 331 (376)
Q Consensus 253 l~~~~G~L~l~~~~~~~~~~l~IW~l~-~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~ 331 (376)
....++.+++... .. .|+.++ ..++..|.......|.. . ... . ..+...++.+++.. ....
T Consensus 72 ~~~~~~~v~v~~~---~~---~l~~~d~~tG~~~W~~~~~~~~~~-~--~~~----~-~~~~~~~~~~~~~~----~~g~ 133 (238)
T PF13360_consen 72 PVVDGGRVYVGTS---DG---SLYALDAKTGKVLWSIYLTSSPPA-G--VRS----S-SSPAVDGDRLYVGT----SSGK 133 (238)
T ss_dssp EEEETTEEEEEET---TS---EEEEEETTTSCEEEEEEE-SSCTC-S--TB-------SEEEEETTEEEEEE----TCSE
T ss_pred eeecccccccccc---ee---eeEecccCCcceeeeecccccccc-c--ccc----c-cCceEecCEEEEEe----ccCc
Confidence 3667888888874 22 566666 44455898432122221 0 111 1 11221234444432 4778
Q ss_pred EEEEeCCCCcEEEEE
Q 017140 332 VIHYDVVNRSMRRAE 346 (376)
Q Consensus 332 l~~ydl~t~~~~~v~ 346 (376)
++.+|+++++..+-.
T Consensus 134 l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 134 LVALDPKTGKLLWKY 148 (238)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEecCCCcEEEEe
Confidence 999999999876554
No 50
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=85.73 E-value=1.2 Score=28.57 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=23.4
Q ss_pred CcceEE-CceEEEEEecCCCCCCccEEEEEEcCCcceEEE
Q 017140 200 RESVCV-DGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVI 238 (376)
Q Consensus 200 ~~~v~~-~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i 238 (376)
+.++.+ +|.+|..++..........+..||+++.+|+.+
T Consensus 5 h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~ 44 (49)
T PF13418_consen 5 HSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL 44 (49)
T ss_dssp -EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred EEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence 445666 588988887654211113789999999999998
No 51
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=85.03 E-value=22 Score=32.25 Aligned_cols=140 Identities=16% Similarity=0.095 Sum_probs=79.9
Q ss_pred cccccceeeEE-Eec-CCeeEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEEEeecCCCCCcEE
Q 017140 101 RYTTRSVNGII-LMD-FGLYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYR 178 (376)
Q Consensus 101 ~~~~~s~~Gll-~~~-~~~~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~ 178 (376)
+-+++.-+|-+ +.. ...-+...||.++.-. .+ |+++......-....|+. .-+.+... ..-.++
T Consensus 192 yGi~atpdGsvwyaslagnaiaridp~~~~ae------v~--p~P~~~~~gsRriwsdpi----g~~wittw--g~g~l~ 257 (353)
T COG4257 192 YGICATPDGSVWYASLAGNAIARIDPFAGHAE------VV--PQPNALKAGSRRIWSDPI----GRAWITTW--GTGSLH 257 (353)
T ss_pred cceEECCCCcEEEEeccccceEEcccccCCcc------ee--cCCCcccccccccccCcc----CcEEEecc--CCceee
Confidence 34566677777 432 2225788999999777 67 766442111122333331 11222221 255788
Q ss_pred EEEeCCCceEECcCCCCccCCCcceEECce-EEEEEecCCCCCCccEEEEEEcCCcceEEEecChhhhccCCccceEEeC
Q 017140 179 IFELGTNSWRPLKGGPNYYPQRESVCVDGF-VYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYS 257 (376)
Q Consensus 179 vyss~~~~W~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~ 257 (376)
-|+..+-+|.+-.-+-.. ....+++++.. .-|+..-+. ..|..||.++++|.++++|.... ..+.|.-..
T Consensus 258 rfdPs~~sW~eypLPgs~-arpys~rVD~~grVW~sea~a-----gai~rfdpeta~ftv~p~pr~n~---gn~ql~gr~ 328 (353)
T COG4257 258 RFDPSVTSWIEYPLPGSK-ARPYSMRVDRHGRVWLSEADA-----GAIGRFDPETARFTVLPIPRPNS---GNIQLDGRP 328 (353)
T ss_pred EeCcccccceeeeCCCCC-CCcceeeeccCCcEEeecccc-----CceeecCcccceEEEecCCCCCC---CceeccCCC
Confidence 889988889875433210 12344666543 567654433 38999999999999999886543 133333334
Q ss_pred CeEEEE
Q 017140 258 GRPAIA 263 (376)
Q Consensus 258 G~L~l~ 263 (376)
|.+.+.
T Consensus 329 ge~W~~ 334 (353)
T COG4257 329 GELWFT 334 (353)
T ss_pred Cceeec
Confidence 454443
No 52
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=84.15 E-value=29 Score=36.64 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=24.5
Q ss_pred CCcceEECceEEEEEecCCCCCCccEEEEEEcCC--cceEE
Q 017140 199 QRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHE--ESFRV 237 (376)
Q Consensus 199 ~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~--~~~~~ 237 (376)
...++.++|.+|...... .+.++|.++ +.|+.
T Consensus 187 e~TPlvvgg~lYv~t~~~-------~V~ALDa~TGk~lW~~ 220 (764)
T TIGR03074 187 QATPLKVGDTLYLCTPHN-------KVIALDAATGKEKWKF 220 (764)
T ss_pred ccCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEE
Confidence 456799999999986543 799999875 45654
No 53
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=81.85 E-value=41 Score=30.62 Aligned_cols=221 Identities=16% Similarity=0.179 Sum_probs=117.0
Q ss_pred cccccceeeEE-EecC-CeeEEEEcCCCCceeeCCCceeecCCCC----CCcccee--E--EEe-EeCCCCcEEEEEEe-
Q 017140 101 RYTTRSVNGII-LMDF-GLYATLCNPSTRQTFNTPFVCSLTSPSV----NSTYFCV--N--SFG-FDPVSKKYKVLNSW- 168 (376)
Q Consensus 101 ~~~~~s~~Gll-~~~~-~~~~~V~NP~T~~~~~~p~~~~L~~P~~----~~~~~~~--~--~l~-~d~~~~~ykvv~~~- 168 (376)
+.+..+-+|-+ +... ...+==.||.|++....|++ .=..|.. +.....+ . +++ +|+.+..++=+-+.
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg-~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~ 143 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLG-SGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPL 143 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecC-CCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeeccc
Confidence 34555667877 5443 22455689999999944443 1100110 0000000 1 111 23323222221111
Q ss_pred ecCCCCCcEEEEEeCCCceEECcCC------CC---------cc-CCCcceEE--CceEEEEEecCCCCCCccEEEEEEc
Q 017140 169 AIPGRDPEYRIFELGTNSWRPLKGG------PN---------YY-PQRESVCV--DGFVYFRSWVSTHKNGRTVLIAFDL 230 (376)
Q Consensus 169 ~~~~~~~~~~vyss~~~~W~~~~~~------~~---------~~-~~~~~v~~--~G~lyw~~~~~~~~~~~~~il~fD~ 230 (376)
.......+.-||+-..+-|-.-... |. .. ....++++ ||.+|+.....+ .|...|+
T Consensus 144 ~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagn------aiaridp 217 (353)
T COG4257 144 EHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGN------AIARIDP 217 (353)
T ss_pred ccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEecccc------ceEEccc
Confidence 0112356677888888888442211 10 00 12344444 799998876653 8999999
Q ss_pred CCcceEEEecChhhhccCCccceEEeCCeEEEEEccCCCCCeEEEEEeccCCCCCeEEEEEEcCCCccccccccccccee
Q 017140 231 HEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFV 310 (376)
Q Consensus 231 ~~~~~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~ 310 (376)
.+..-.+++.|....... +..-...-|++...+. ....+ -.. +....+|... .||..-. ..+-
T Consensus 218 ~~~~aev~p~P~~~~~gs-Rriwsdpig~~wittw---g~g~l--~rf-dPs~~sW~ey--pLPgs~a--------rpys 280 (353)
T COG4257 218 FAGHAEVVPQPNALKAGS-RRIWSDPIGRAWITTW---GTGSL--HRF-DPSVTSWIEY--PLPGSKA--------RPYS 280 (353)
T ss_pred ccCCcceecCCCcccccc-cccccCccCcEEEecc---CCcee--eEe-Ccccccceee--eCCCCCC--------Ccce
Confidence 999888999898754222 1122334466655544 22222 222 2234468874 6664311 1212
Q ss_pred EEeecCCeEEEeecccCCCcEEEEEeCCCCcEEEEEEe
Q 017140 311 DCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRAEIF 348 (376)
Q Consensus 311 ~~~~~~g~ill~~~~~~~~~~l~~ydl~t~~~~~v~~~ 348 (376)
..++..|.+.+.- .....+..||+++.++.++.+.
T Consensus 281 ~rVD~~grVW~se---a~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 281 MRVDRHGRVWLSE---ADAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred eeeccCCcEEeec---cccCceeecCcccceEEEecCC
Confidence 3344677777742 3456799999999999997664
No 54
>PF13964 Kelch_6: Kelch motif
Probab=81.55 E-value=2.4 Score=27.28 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=19.9
Q ss_pred CCCcEEEEEeCCCceEECcCCCC
Q 017140 173 RDPEYRIFELGTNSWRPLKGGPN 195 (376)
Q Consensus 173 ~~~~~~vyss~~~~W~~~~~~~~ 195 (376)
....+++|+.++++|+.++.++.
T Consensus 26 ~~~~v~~yd~~t~~W~~~~~mp~ 48 (50)
T PF13964_consen 26 YSNDVERYDPETNTWEQLPPMPT 48 (50)
T ss_pred ccccEEEEcCCCCcEEECCCCCC
Confidence 46789999999999999987663
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=80.50 E-value=0.54 Score=44.68 Aligned_cols=39 Identities=21% Similarity=0.320 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHhcCCCccccceeeeccccchhhccCh
Q 017140 10 SSKPIPSEIIYDILTKLPIKSLMRFRCLSKLCSSYITAP 48 (376)
Q Consensus 10 ~~~~LP~Dll~~IL~rLP~~~l~r~r~VCK~W~~li~s~ 48 (376)
....||.+++..||+-|..+++.|++.+||.|+.+..|.
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 345699999999999999999999999999999987763
No 56
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=78.27 E-value=5.2 Score=25.58 Aligned_cols=38 Identities=16% Similarity=0.453 Sum_probs=27.6
Q ss_pred ceEEeCCeEEEEEcc---CCCCCeEEEEEeccCCCCCeEEEE
Q 017140 252 ELIVYSGRPAIADHL---LLEDATMTIWVLDENDGDYWVQIK 290 (376)
Q Consensus 252 ~l~~~~G~L~l~~~~---~~~~~~l~IW~l~~~~~~~W~~~~ 290 (376)
..++.+++|+++... .......++|+++ .++..|+.+.
T Consensus 6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d-~~t~~W~~~~ 46 (49)
T PF07646_consen 6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFD-TETNQWTELS 46 (49)
T ss_pred EEEEECCEEEEECCcccCCCCcccceeEEEE-CCCCEEeecC
Confidence 456889999999875 2235566789985 4467899863
No 57
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=78.23 E-value=46 Score=29.08 Aligned_cols=124 Identities=13% Similarity=0.186 Sum_probs=66.5
Q ss_pred EECceEEEEEecCCCCCCccEEEEEEcCCcceEEEecChhhh--ccCCccceEE--eCC--eEEEEEcc--CCCCCeEEE
Q 017140 204 CVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKAL--ARRSESELIV--YSG--RPAIADHL--LLEDATMTI 275 (376)
Q Consensus 204 ~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~--~~~~~~~l~~--~~G--~L~l~~~~--~~~~~~l~I 275 (376)
.+||-+ ++... ..+...|+.|+++..++.|+... .......++- ..+ ++..+... ......++|
T Consensus 3 sCnGLl-c~~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~V 74 (230)
T TIGR01640 3 PCDGLI-CFSYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQV 74 (230)
T ss_pred ccceEE-EEecC-------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEE
Confidence 468888 44432 17999999999999997665321 0000011111 011 33333221 012345677
Q ss_pred EEeccCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccC-CC-cEEEEEeCCCCcEEE-EEEe
Q 017140 276 WVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVS-DS-VYVIHYDVVNRSMRR-AEIF 348 (376)
Q Consensus 276 W~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~-~~-~~l~~ydl~t~~~~~-v~~~ 348 (376)
..+. +++|..+. ..|.. . .. .. . .+..+|.+.++..... .. ..++.||++++++++ +...
T Consensus 75 ys~~---~~~Wr~~~-~~~~~-~---~~---~~-~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P 137 (230)
T TIGR01640 75 YTLG---SNSWRTIE-CSPPH-H---PL---KS-R-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP 137 (230)
T ss_pred EEeC---CCCccccc-cCCCC-c---cc---cC-C-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence 7775 45798874 22211 1 11 11 1 2225888888764211 12 279999999999995 6544
No 58
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=77.44 E-value=13 Score=23.18 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=28.7
Q ss_pred ccceEEeCCeEEEEEccCC-CCCeEEEEEeccCCCCCeEEEE
Q 017140 250 ESELIVYSGRPAIADHLLL-EDATMTIWVLDENDGDYWVQIK 290 (376)
Q Consensus 250 ~~~l~~~~G~L~l~~~~~~-~~~~l~IW~l~~~~~~~W~~~~ 290 (376)
....+..+++|+++..... ....-.+|.++ ...+.|+.+.
T Consensus 4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd-~~~~~W~~~~ 44 (47)
T PF01344_consen 4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYD-PETNTWEELP 44 (47)
T ss_dssp SEEEEEETTEEEEEEEBESTSSBEEEEEEEE-TTTTEEEEEE
T ss_pred cCEEEEECCEEEEEeeecccCceeeeEEEEe-CCCCEEEEcC
Confidence 4457889999999988654 34455677775 3467899874
No 59
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=77.09 E-value=57 Score=31.26 Aligned_cols=113 Identities=12% Similarity=0.197 Sum_probs=62.6
Q ss_pred cceEECceEEEEEecCCCCCCccEEEEEEcCCcc--eEEEecChhhhc---c---CCccceEEeCCeEEEEEccCCCCCe
Q 017140 201 ESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEES--FRVIEIPAKALA---R---RSESELIVYSGRPAIADHLLLEDAT 272 (376)
Q Consensus 201 ~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~--~~~i~lP~~~~~---~---~~~~~l~~~~G~L~l~~~~~~~~~~ 272 (376)
.+++.+|.+|...... .+.+||.++.+ |+. +++..... . ......+..+|++++... ..
T Consensus 64 sPvv~~~~vy~~~~~g-------~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~----~g- 130 (394)
T PRK11138 64 HPAVAYNKVYAADRAG-------LVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE----KG- 130 (394)
T ss_pred ccEEECCEEEEECCCC-------eEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEcC----CC-
Confidence 5688999999876543 79999987554 432 33321100 0 001224566788887643 12
Q ss_pred EEEEEec-cCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccCCCcEEEEEeCCCCcEEEE
Q 017140 273 MTIWVLD-ENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRA 345 (376)
Q Consensus 273 l~IW~l~-~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~l~~ydl~t~~~~~v 345 (376)
.+..++ +.++..|+... +.. ... .+ .+ .+|.+++. ..+..++.+|+++++..+-
T Consensus 131 -~l~ald~~tG~~~W~~~~---~~~----~~s---sP---~v-~~~~v~v~----~~~g~l~ald~~tG~~~W~ 185 (394)
T PRK11138 131 -QVYALNAEDGEVAWQTKV---AGE----ALS---RP---VV-SDGLVLVH----TSNGMLQALNESDGAVKWT 185 (394)
T ss_pred -EEEEEECCCCCCcccccC---CCc----eec---CC---EE-ECCEEEEE----CCCCEEEEEEccCCCEeee
Confidence 255555 34555897642 211 111 11 22 25555553 2456789999988887654
No 60
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=75.76 E-value=3.8 Score=26.23 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=21.0
Q ss_pred CCCcEEEEEeCCCceEECcCCCCccCC
Q 017140 173 RDPEYRIFELGTNSWRPLKGGPNYYPQ 199 (376)
Q Consensus 173 ~~~~~~vyss~~~~W~~~~~~~~~~~~ 199 (376)
....+++|+..+++|+.++..|+.+..
T Consensus 17 ~~nd~~~~~~~~~~W~~~~~~P~~R~~ 43 (49)
T PF13415_consen 17 RLNDVWVFDLDTNTWTRIGDLPPPRSG 43 (49)
T ss_pred EecCEEEEECCCCEEEECCCCCCCccc
Confidence 466899999999999999666654433
No 61
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=74.23 E-value=9.3 Score=29.54 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=29.8
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCCCCc-cceeEEEeEeCCCCcEEEEEEe
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSVNST-YFCVNSFGFDPVSKKYKVLNSW 168 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~~~-~~~~~~l~~d~~~~~ykvv~~~ 168 (376)
.+.+.||.|++|. |..... ....+.+..++..+.|+|++.+
T Consensus 10 ~Vm~~d~~tk~W~----------P~~~~~~~ls~V~~~~~~~~~~yrIvg~~ 51 (111)
T cd01207 10 SVMVYDDSNKKWV----------PAGGGSQGFSRVQIYHHPRNNTFRVVGRK 51 (111)
T ss_pred EeeEEcCCCCcEE----------cCCCCCCCcceEEEEEcCCCCEEEEEEee
Confidence 6899999999999 544321 1112677788888899999943
No 62
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=73.90 E-value=4.6 Score=25.72 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=18.1
Q ss_pred cEEEEE-EeecCCCCCcEEEEEeCCCceEECcCCC
Q 017140 161 KYKVLN-SWAIPGRDPEYRIFELGTNSWRPLKGGP 194 (376)
Q Consensus 161 ~ykvv~-~~~~~~~~~~~~vyss~~~~W~~~~~~~ 194 (376)
...|++ ..........+++|+..+++|+.++.+|
T Consensus 14 ~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 14 SIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp EEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred eEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 344444 4333235678999999999999985554
No 63
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=73.13 E-value=5.9 Score=25.31 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=24.2
Q ss_pred CceEEEEEecCC-CCCCccEEEEEEcCCcceEEE-ecCh
Q 017140 206 DGFVYFRSWVST-HKNGRTVLIAFDLHEESFRVI-EIPA 242 (376)
Q Consensus 206 ~G~lyw~~~~~~-~~~~~~~il~fD~~~~~~~~i-~lP~ 242 (376)
++++|..++... .......+.+||+.+.+|+.+ ++|.
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~ 39 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP 39 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC
Confidence 456777766552 111124799999999999988 3444
No 64
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=72.82 E-value=9.2 Score=29.26 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=30.0
Q ss_pred eEEEEcCCCC-ceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEEEe
Q 017140 118 YATLCNPSTR-QTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSW 168 (376)
Q Consensus 118 ~~~V~NP~T~-~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~~~ 168 (376)
.++++||.|+ .|. |..... ..+.+.+|+..+.|+||.+.
T Consensus 12 ~V~~yd~~tKk~Wv----------Ps~~~~--~~V~~y~~~~~ntfRIi~~~ 51 (111)
T cd01206 12 HVFQIDPKTKKNWI----------PASKHA--VTVSYFYDSTRNVYRIISVG 51 (111)
T ss_pred EEEEECCCCcceeE----------eCCCCc--eeEEEEecCCCcEEEEEEec
Confidence 7899999986 888 555321 12788889999999999853
No 65
>PLN02772 guanylate kinase
Probab=72.04 E-value=21 Score=34.31 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=51.3
Q ss_pred CCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEe----cChhhhccCCccceEEeCCeEEEEEccCCCCCeEE
Q 017140 199 QRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIE----IPAKALARRSESELIVYSGRPAIADHLLLEDATMT 274 (376)
Q Consensus 199 ~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~----lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~ 274 (376)
.+.+|.+++++|.+++..+.......+..||..+.+|..-. .|..+. -+...+.-+++|.++.-. ....=+
T Consensus 27 ~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~---GhSa~v~~~~rilv~~~~--~~~~~~ 101 (398)
T PLN02772 27 RETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK---GYSAVVLNKDRILVIKKG--SAPDDS 101 (398)
T ss_pred cceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCC---cceEEEECCceEEEEeCC--CCCccc
Confidence 56789999999999976553212258999999999998743 233332 133334447888888652 223356
Q ss_pred EEEecc
Q 017140 275 IWVLDE 280 (376)
Q Consensus 275 IW~l~~ 280 (376)
||-|+-
T Consensus 102 ~w~l~~ 107 (398)
T PLN02772 102 IWFLEV 107 (398)
T ss_pred eEEEEc
Confidence 899873
No 66
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=71.16 E-value=94 Score=29.33 Aligned_cols=112 Identities=20% Similarity=0.177 Sum_probs=60.3
Q ss_pred eeEEEEcCCCCceeeCCCceeecCCCCCCc-cceeEEEeEeCCCCcEEEEE-EeecC-CCC---CcEEEE--E-------
Q 017140 117 LYATLCNPSTRQTFNTPFVCSLTSPSVNST-YFCVNSFGFDPVSKKYKVLN-SWAIP-GRD---PEYRIF--E------- 181 (376)
Q Consensus 117 ~~~~V~NP~T~~~~~~p~~~~L~~P~~~~~-~~~~~~l~~d~~~~~ykvv~-~~~~~-~~~---~~~~vy--s------- 181 (376)
.+..|+++.|+... .+ |..... ... +.+.. .++-.++- ..... ... ..+|++ .
T Consensus 86 ~~t~vyDt~t~av~------~~--P~l~~pk~~p-isv~V---G~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~ 153 (342)
T PF07893_consen 86 GRTLVYDTDTRAVA------TG--PRLHSPKRCP-ISVSV---GDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPS 153 (342)
T ss_pred CCeEEEECCCCeEe------cc--CCCCCCCcce-EEEEe---CCeEEEeeccCccccccCccceeEEEecccccccccc
Confidence 37899999999999 55 654332 112 22222 22222222 11110 000 155555 2
Q ss_pred -eCCCceEECcCCCCccC--------CCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEE---ecChhhh
Q 017140 182 -LGTNSWRPLKGGPNYYP--------QRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVI---EIPAKAL 245 (376)
Q Consensus 182 -s~~~~W~~~~~~~~~~~--------~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i---~lP~~~~ 245 (376)
.++.+|+.+..+|.... ...+|+ +|.--|+...... ..-.+||+++.+|+.. .||..-.
T Consensus 154 ~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~----~GTysfDt~~~~W~~~GdW~LPF~G~ 224 (342)
T PF07893_consen 154 PEESWSWRSLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRR----WGTYSFDTESHEWRKHGDWMLPFHGQ 224 (342)
T ss_pred CCCcceEEcCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCc----eEEEEEEcCCcceeeccceecCcCCc
Confidence 12237777766442111 234556 8877777544310 2699999999999987 6786554
No 67
>smart00612 Kelch Kelch domain.
Probab=70.27 E-value=10 Score=23.31 Aligned_cols=20 Identities=10% Similarity=0.363 Sum_probs=15.8
Q ss_pred cEEEEEEcCCcceEEEe-cCh
Q 017140 223 TVLIAFDLHEESFRVIE-IPA 242 (376)
Q Consensus 223 ~~il~fD~~~~~~~~i~-lP~ 242 (376)
..+..||+.+.+|+.++ +|.
T Consensus 15 ~~v~~yd~~~~~W~~~~~~~~ 35 (47)
T smart00612 15 KSVEVYDPETNKWTPLPSMPT 35 (47)
T ss_pred eeEEEECCCCCeEccCCCCCC
Confidence 47899999999998874 443
No 68
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=69.11 E-value=1.1e+02 Score=30.87 Aligned_cols=124 Identities=15% Similarity=0.218 Sum_probs=65.7
Q ss_pred CcceEECceEEEEEecCCCCCCccEEEEEEcCCc--ceEEE-ecChhhhc---c-CCccceEEeCCeEEEEEccCCCCCe
Q 017140 200 RESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEE--SFRVI-EIPAKALA---R-RSESELIVYSGRPAIADHLLLEDAT 272 (376)
Q Consensus 200 ~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~--~~~~i-~lP~~~~~---~-~~~~~l~~~~G~L~l~~~~~~~~~~ 272 (376)
..+++++|.+|...... .|.++|..+. .|+.- ..|..... . ....-+...+|+|++... ..
T Consensus 63 stPvv~~g~vyv~s~~g-------~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~---dg-- 130 (527)
T TIGR03075 63 SQPLVVDGVMYVTTSYS-------RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL---DA-- 130 (527)
T ss_pred cCCEEECCEEEEECCCC-------cEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC---CC--
Confidence 45688999999865543 7999998764 45542 33322110 0 001123456778777654 21
Q ss_pred EEEEEecc-CCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeeccc--CCCcEEEEEeCCCCcEEEE
Q 017140 273 MTIWVLDE-NDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTV--SDSVYVIHYDVVNRSMRRA 345 (376)
Q Consensus 273 l~IW~l~~-~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~--~~~~~l~~ydl~t~~~~~v 345 (376)
.+..++. .++..|..........+. ... . ++..+|.|++..... .....|+.||.+|++..+-
T Consensus 131 -~l~ALDa~TGk~~W~~~~~~~~~~~~--~ts----s---P~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 131 -RLVALDAKTGKVVWSKKNGDYKAGYT--ITA----A---PLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred -EEEEEECCCCCEEeeccccccccccc--ccC----C---cEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 3666653 344478764211111110 111 1 222355555532210 1246899999999997775
No 69
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=67.19 E-value=1.1e+02 Score=28.67 Aligned_cols=174 Identities=14% Similarity=0.261 Sum_probs=89.7
Q ss_pred EEEeEeCCCCcEEEEEEeecCCCCCcEEEEEeCCC-c-------eEECcCCCC-ccC---CCcceEE--CceEEEEEecC
Q 017140 151 NSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTN-S-------WRPLKGGPN-YYP---QRESVCV--DGFVYFRSWVS 216 (376)
Q Consensus 151 ~~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~~~-~-------W~~~~~~~~-~~~---~~~~v~~--~G~lyw~~~~~ 216 (376)
+.+..++ ++.|-+++-.. ...+.+|....+ . ++..+..+. ... ....+.+ +|...|.....
T Consensus 90 ~~i~~~~-~g~~l~vany~----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG 164 (345)
T PF10282_consen 90 CHIAVDP-DGRFLYVANYG----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG 164 (345)
T ss_dssp EEEEECT-TSSEEEEEETT----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred EEEEEec-CCCEEEEEEcc----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence 5566665 45665555322 457888888874 1 111111111 111 1122333 46665665543
Q ss_pred CCCCCccEEEEEEcCCcc--eE---EEecChhhhccCCccceEEeCCeEEEEEccCCCCCeEEEEEeccCCCCCeEEEE-
Q 017140 217 THKNGRTVLIAFDLHEES--FR---VIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIK- 290 (376)
Q Consensus 217 ~~~~~~~~il~fD~~~~~--~~---~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~- 290 (376)
. ..|..|+++.+. +. .+.+|.... .+++.+..-+..+|++.. ....+.++.+... .+.++.+.
T Consensus 165 ~-----D~v~~~~~~~~~~~l~~~~~~~~~~G~G--PRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~-~g~~~~~~~ 233 (345)
T PF10282_consen 165 A-----DRVYVYDIDDDTGKLTPVDSIKVPPGSG--PRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPS-DGSLTEIQT 233 (345)
T ss_dssp T-----TEEEEEEE-TTS-TEEEEEEEECSTTSS--EEEEEE-TTSSEEEEEET---TTTEEEEEEEETT-TTEEEEEEE
T ss_pred C-----CEEEEEEEeCCCceEEEeeccccccCCC--CcEEEEcCCcCEEEEecC---CCCcEEEEeeccc-CCceeEEEE
Confidence 2 478888887655 53 346666543 112222222335666655 6788888888732 34566552
Q ss_pred E-EcCCCcccccccccccceeEEee-cCCeEEEeecccCCCcEEEEEeC--CCCcEEEEEEe
Q 017140 291 V-FLPEDYGEEILEEDIDYFVDCIG-RNNELLLVPQTVSDSVYVIHYDV--VNRSMRRAEIF 348 (376)
Q Consensus 291 ~-~lp~~~~~~~~~~~~~~~~~~~~-~~g~ill~~~~~~~~~~l~~ydl--~t~~~~~v~~~ 348 (376)
+ .+|..+.. .. .. ..+.- .+|+.+++... ....|..|++ ++++++.+...
T Consensus 234 ~~~~~~~~~~-~~----~~-~~i~ispdg~~lyvsnr--~~~sI~vf~~d~~~g~l~~~~~~ 287 (345)
T PF10282_consen 234 ISTLPEGFTG-EN----AP-AEIAISPDGRFLYVSNR--GSNSISVFDLDPATGTLTLVQTV 287 (345)
T ss_dssp EESCETTSCS-SS----SE-EEEEE-TTSSEEEEEEC--TTTEEEEEEECTTTTTEEEEEEE
T ss_pred eeeccccccc-cC----Cc-eeEEEecCCCEEEEEec--cCCEEEEEEEecCCCceEEEEEE
Confidence 2 34543321 00 01 12222 68887777642 4556666666 67788888644
No 70
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=62.79 E-value=1.4e+02 Score=28.22 Aligned_cols=109 Identities=12% Similarity=0.178 Sum_probs=55.7
Q ss_pred CcceEECceEEEEEecCCCCCCccEEEEEEcCCcceE-EEecChhhhccCCccceEEeCCeEEEEEccCCCCCeEEEEEe
Q 017140 200 RESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFR-VIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVL 278 (376)
Q Consensus 200 ~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW~l 278 (376)
..++..+|.+|...... .+.+||..+++-. ..+++.... ...+..++.+++... .. .++.+
T Consensus 59 ~~p~v~~~~v~v~~~~g-------~v~a~d~~tG~~~W~~~~~~~~~-----~~p~v~~~~v~v~~~----~g--~l~al 120 (377)
T TIGR03300 59 LQPAVAGGKVYAADADG-------TVVALDAETGKRLWRVDLDERLS-----GGVGADGGLVFVGTE----KG--EVIAL 120 (377)
T ss_pred cceEEECCEEEEECCCC-------eEEEEEccCCcEeeeecCCCCcc-----cceEEcCCEEEEEcC----CC--EEEEE
Confidence 35578888888776542 7999998765432 234444322 123344666665543 12 24444
Q ss_pred cc-CCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccCCCcEEEEEeCCCCcEEE
Q 017140 279 DE-NDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRR 344 (376)
Q Consensus 279 ~~-~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~l~~ydl~t~~~~~ 344 (376)
+. .++..|... ++.. ... .+ .+ .++.+++. ..+..++++|+++++..+
T Consensus 121 d~~tG~~~W~~~---~~~~----~~~---~p---~v-~~~~v~v~----~~~g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 121 DAEDGKELWRAK---LSSE----VLS---PP---LV-ANGLVVVR----TNDGRLTALDAATGERLW 169 (377)
T ss_pred ECCCCcEeeeec---cCce----eec---CC---EE-ECCEEEEE----CCCCeEEEEEcCCCceee
Confidence 42 334467643 1111 111 01 11 24444442 245567788877776543
No 71
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=60.61 E-value=1.6e+02 Score=28.16 Aligned_cols=138 Identities=13% Similarity=0.115 Sum_probs=70.9
Q ss_pred cEEEEEeCCC--ceEECcCCCC--------ccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCc--ceEEEecChh
Q 017140 176 EYRIFELGTN--SWRPLKGGPN--------YYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEE--SFRVIEIPAK 243 (376)
Q Consensus 176 ~~~vyss~~~--~W~~~~~~~~--------~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~--~~~~i~lP~~ 243 (376)
.+..|+.++| .|+.--.... ......++..+|.+|..... ..+.+||.++. .|+ .+++..
T Consensus 80 ~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~-~~~~~~ 151 (394)
T PRK11138 80 LVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEK-------GQVYALNAEDGEVAWQ-TKVAGE 151 (394)
T ss_pred eEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCC-------CEEEEEECCCCCCccc-ccCCCc
Confidence 5666676666 6875322210 01123467888999975433 27999998764 453 344432
Q ss_pred hhccCCccceEEeCCeEEEEEccCCCCCeEEEEEecc-CCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEe
Q 017140 244 ALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDE-NDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLV 322 (376)
Q Consensus 244 ~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW~l~~-~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~ 322 (376)
.. ...+..+|.|++... .. .+..++- .++..|.... ..|.. . ..+ . ..++-.+|.+++.
T Consensus 152 ~~-----ssP~v~~~~v~v~~~----~g--~l~ald~~tG~~~W~~~~-~~~~~-~--~~~----~-~sP~v~~~~v~~~ 211 (394)
T PRK11138 152 AL-----SRPVVSDGLVLVHTS----NG--MLQALNESDGAVKWTVNL-DVPSL-T--LRG----E-SAPATAFGGAIVG 211 (394)
T ss_pred ee-----cCCEEECCEEEEECC----CC--EEEEEEccCCCEeeeecC-CCCcc-c--ccC----C-CCCEEECCEEEEE
Confidence 21 112344677766433 22 3555542 3344787642 12211 0 001 0 1112124555553
Q ss_pred ecccCCCcEEEEEeCCCCcEEEE
Q 017140 323 PQTVSDSVYVIHYDVVNRSMRRA 345 (376)
Q Consensus 323 ~~~~~~~~~l~~ydl~t~~~~~v 345 (376)
..+..++.+|+++++..+-
T Consensus 212 ----~~~g~v~a~d~~~G~~~W~ 230 (394)
T PRK11138 212 ----GDNGRVSAVLMEQGQLIWQ 230 (394)
T ss_pred ----cCCCEEEEEEccCChhhhe
Confidence 2466789999998876553
No 72
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=59.89 E-value=1.4e+02 Score=28.31 Aligned_cols=112 Identities=9% Similarity=0.077 Sum_probs=68.8
Q ss_pred ceEECceEEEEEecCCCCCCccEEEEEEcCCcc--eEEEecC-hhhhccCCccceEEeCCeEEEEEccCCCCCeEEEEEe
Q 017140 202 SVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEES--FRVIEIP-AKALARRSESELIVYSGRPAIADHLLLEDATMTIWVL 278 (376)
Q Consensus 202 ~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~--~~~i~lP-~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW~l 278 (376)
+++.+|++|...... .|.+||.++.+ |+.-... ... ........+|+|++-.. .. .++.+
T Consensus 64 ~~~~dg~v~~~~~~G-------~i~A~d~~~g~~~W~~~~~~~~~~----~~~~~~~~~G~i~~g~~---~g---~~y~l 126 (370)
T COG1520 64 PADGDGTVYVGTRDG-------NIFALNPDTGLVKWSYPLLGAVAQ----LSGPILGSDGKIYVGSW---DG---KLYAL 126 (370)
T ss_pred cEeeCCeEEEecCCC-------cEEEEeCCCCcEEecccCcCccee----ccCceEEeCCeEEEecc---cc---eEEEE
Confidence 599999999984443 79999998866 6544333 011 11222333899877766 22 78888
Q ss_pred cc-CCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccCCCcEEEEEeCCCCcEEEEE
Q 017140 279 DE-NDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRAE 346 (376)
Q Consensus 279 ~~-~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~l~~ydl~t~~~~~v~ 346 (376)
+. .+...|.... ..... ..+ . ++..++.+++.. .+..+++.|.++++.++..
T Consensus 127 d~~~G~~~W~~~~-~~~~~----~~~----~---~v~~~~~v~~~s----~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 127 DASTGTLVWSRNV-GGSPY----YAS----P---PVVGDGTVYVGT----DDGHLYALNADTGTLKWTY 179 (370)
T ss_pred ECCCCcEEEEEec-CCCeE----Eec----C---cEEcCcEEEEec----CCCeEEEEEccCCcEEEEE
Confidence 86 5555888752 11101 111 1 222466666632 4678999999988887763
No 73
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=58.66 E-value=15 Score=35.95 Aligned_cols=134 Identities=10% Similarity=0.159 Sum_probs=77.5
Q ss_pred CCcceEECc--eEEEEEecCCCCCCccEEEEEEcCCcceEEEe----cChhhhccCCccceE-EeCCeEEEEEccC----
Q 017140 199 QRESVCVDG--FVYFRSWVSTHKNGRTVLIAFDLHEESFRVIE----IPAKALARRSESELI-VYSGRPAIADHLL---- 267 (376)
Q Consensus 199 ~~~~v~~~G--~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~----lP~~~~~~~~~~~l~-~~~G~L~l~~~~~---- 267 (376)
.+..|+..| ++|..++.++...- ...-+|......|..+. .|.... ++.++. +...+||++.-..
T Consensus 263 GHQMV~~~~~~CiYLYGGWdG~~~l-~DFW~Y~v~e~~W~~iN~~t~~PG~Rs---CHRMVid~S~~KLYLlG~Y~~sS~ 338 (723)
T KOG2437|consen 263 GHQMVIDVQTECVYLYGGWDGTQDL-ADFWAYSVKENQWTCINRDTEGPGARS---CHRMVIDISRRKLYLLGRYLDSSV 338 (723)
T ss_pred cceEEEeCCCcEEEEecCcccchhH-HHHHhhcCCcceeEEeecCCCCCcchh---hhhhhhhhhHhHHhhhhhcccccc
Confidence 567788888 89988876542210 13556778888999984 454443 223322 3456888875321
Q ss_pred --CCCCeEEEEEeccCCCCCeEEEEEE-----cCCCcccccccccccceeEEeecCCeEEEeec-ccC----CCcEEEEE
Q 017140 268 --LEDATMTIWVLDENDGDYWVQIKVF-----LPEDYGEEILEEDIDYFVDCIGRNNELLLVPQ-TVS----DSVYVIHY 335 (376)
Q Consensus 268 --~~~~~l~IW~l~~~~~~~W~~~~~~-----lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~-~~~----~~~~l~~y 335 (376)
..+..-++|+.+- ++..|..+... .|.. +++ ++ +.+.++.|-|++..- ... .-..++.|
T Consensus 339 r~~~s~RsDfW~FDi-~~~~W~~ls~dt~~dGGP~~----vfD---Hq-M~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf 409 (723)
T KOG2437|consen 339 RNSKSLRSDFWRFDI-DTNTWMLLSEDTAADGGPKL----VFD---HQ-MCVDSEKHMIYVFGGRILTCNEPQFSGLYAF 409 (723)
T ss_pred ccccccccceEEEec-CCceeEEecccccccCCcce----eec---ce-eeEecCcceEEEecCeeccCCCccccceEEE
Confidence 1255678999964 46789987321 2322 333 33 333334554555431 111 12358999
Q ss_pred eCCCCcEEEE
Q 017140 336 DVVNRSMRRA 345 (376)
Q Consensus 336 dl~t~~~~~v 345 (376)
|.+...|+-.
T Consensus 410 ~~~~~~w~~l 419 (723)
T KOG2437|consen 410 NCQCQTWKLL 419 (723)
T ss_pred ecCCccHHHH
Confidence 9999988754
No 74
>PF13013 F-box-like_2: F-box-like domain
Probab=58.57 E-value=4 Score=31.46 Aligned_cols=29 Identities=14% Similarity=0.097 Sum_probs=25.2
Q ss_pred CCCCCHHHHHHHhcCCCccccceeeeccc
Q 017140 11 SKPIPSEIIYDILTKLPIKSLMRFRCLSK 39 (376)
Q Consensus 11 ~~~LP~Dll~~IL~rLP~~~l~r~r~VCK 39 (376)
+.+||+||+..|+..-...++......|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 67899999999999999888877776666
No 75
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=56.99 E-value=19 Score=21.74 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=18.1
Q ss_pred CcceEECceEEEEEecCCCCCCccEEEEEEcCC
Q 017140 200 RESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHE 232 (376)
Q Consensus 200 ~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~ 232 (376)
..+++.+|.+|...... .+.+||.++
T Consensus 15 ~~~~v~~g~vyv~~~dg-------~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDG-------NLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTS-------EEEEEETT-
T ss_pred cCCEEECCEEEEEcCCC-------EEEEEeCCC
Confidence 44588899999887754 899999874
No 76
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=56.85 E-value=27 Score=20.91 Aligned_cols=19 Identities=11% Similarity=0.017 Sum_probs=16.3
Q ss_pred CCcEEEEEeCCCCcEEEEE
Q 017140 328 DSVYVIHYDVVNRSMRRAE 346 (376)
Q Consensus 328 ~~~~l~~ydl~t~~~~~v~ 346 (376)
.+..++.+|.+|++..+-.
T Consensus 8 ~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 8 PDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp TTSEEEEEETTTTSEEEEE
T ss_pred CCCEEEEEECCCCCEEEee
Confidence 6789999999999987764
No 77
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=55.23 E-value=1.9e+02 Score=27.30 Aligned_cols=126 Identities=14% Similarity=0.114 Sum_probs=63.1
Q ss_pred EEEEEEeecCCCCCcEEEEEeCCCceEECcCCCCccCCCcceEECceEEEEEecCCCCCC------ccEEEEEE------
Q 017140 162 YKVLNSWAIPGRDPEYRIFELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNG------RTVLIAFD------ 229 (376)
Q Consensus 162 ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~------~~~il~fD------ 229 (376)
-||+++.. ....-+|+-++..=.............-.+.++|+||-+......... .+.+++++
T Consensus 77 skIv~~d~----~~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~ 152 (342)
T PF07893_consen 77 SKIVAVDQ----SGRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDP 152 (342)
T ss_pred CeEEEEcC----CCCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccc
Confidence 47888654 345889998888544332222111133567889999999865432111 24566665
Q ss_pred cCCcceEEEecChh--hhccCC----ccceEEeCCeEEEEEccCCCCCeEEEEEeccCCCCCeEEE-EEEcCC
Q 017140 230 LHEESFRVIEIPAK--ALARRS----ESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQI-KVFLPE 295 (376)
Q Consensus 230 ~~~~~~~~i~lP~~--~~~~~~----~~~l~~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~-~~~lp~ 295 (376)
...+.|+.-.+|+. ...... ...-++.+|+=.+++.. .. .-.-..+ |.+..+|+++ .-.||.
T Consensus 153 ~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~--~~-~~GTysf-Dt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 153 SPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVN--GR-RWGTYSF-DTESHEWRKHGDWMLPF 221 (342)
T ss_pred cCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEec--CC-ceEEEEE-EcCCcceeeccceecCc
Confidence 23556666555433 222110 11112224533333331 11 0112333 3345589998 467884
No 78
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.57 E-value=62 Score=30.46 Aligned_cols=87 Identities=11% Similarity=0.208 Sum_probs=58.0
Q ss_pred CcEEEEEeCCC--ceEECcCCCCccC-CCcceEECceEEEEEecCCCCCCc----cEEEEEEcCCcceEEE--ecChhhh
Q 017140 175 PEYRIFELGTN--SWRPLKGGPNYYP-QRESVCVDGFVYFRSWVSTHKNGR----TVLIAFDLHEESFRVI--EIPAKAL 245 (376)
Q Consensus 175 ~~~~vyss~~~--~W~~~~~~~~~~~-~~~~v~~~G~lyw~~~~~~~~~~~----~~il~fD~~~~~~~~i--~lP~~~~ 245 (376)
....+.+++.. .|+.++..|-.-. ....+.++|+||..........+. ..+..||+.+.+|..+ ..|....
T Consensus 58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~ 137 (381)
T COG3055 58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLV 137 (381)
T ss_pred ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccc
Confidence 34555566544 7999988774333 556789999999999765322211 4789999999999887 4566533
Q ss_pred ccCCccceEEeCC-eEEEEEc
Q 017140 246 ARRSESELIVYSG-RPAIADH 265 (376)
Q Consensus 246 ~~~~~~~l~~~~G-~L~l~~~ 265 (376)
...-...++ ++++...
T Consensus 138 ----G~~~~~~~~~~i~f~GG 154 (381)
T COG3055 138 ----GASTFSLNGTKIYFFGG 154 (381)
T ss_pred ----cceeEecCCceEEEEcc
Confidence 333445566 7777654
No 79
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=51.60 E-value=2.6e+02 Score=27.90 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=78.6
Q ss_pred eEEEEcCCCCcee---eCC--CceeecCCCCCCccceeEEEeE-eCCCCcEEEEE---EeecCCCCCcEEEEEeCCCceE
Q 017140 118 YATLCNPSTRQTF---NTP--FVCSLTSPSVNSTYFCVNSFGF-DPVSKKYKVLN---SWAIPGRDPEYRIFELGTNSWR 188 (376)
Q Consensus 118 ~~~V~NP~T~~~~---~~p--~~~~L~~P~~~~~~~~~~~l~~-d~~~~~ykvv~---~~~~~~~~~~~~vyss~~~~W~ 188 (376)
.+|+.|-.-+.-. .+| .+ .+ |+++... .+.-| .-.++.-|.+. +.. ......+.+++++-+|.
T Consensus 172 DlY~leL~~Gsgvv~W~ip~t~G-v~--P~pRESH---TAViY~eKDs~~skmvvyGGM~G--~RLgDLW~Ldl~Tl~W~ 243 (830)
T KOG4152|consen 172 DLYILELRPGSGVVAWDIPITYG-VL--PPPRESH---TAVIYTEKDSKKSKMVVYGGMSG--CRLGDLWTLDLDTLTWN 243 (830)
T ss_pred ceEEEEeccCCceEEEecccccC-CC--CCCcccc---eeEEEEeccCCcceEEEEccccc--ccccceeEEecceeecc
Confidence 5778776644333 222 22 34 5554322 23333 33333334333 322 23557888899999998
Q ss_pred ECcCC---CCccCCCcceEECceEEEEEecC-----CCCCC--------ccEEEEEEcCCcceEEEec--------Chhh
Q 017140 189 PLKGG---PNYYPQRESVCVDGFVYFRSWVS-----THKNG--------RTVLIAFDLHEESFRVIEI--------PAKA 244 (376)
Q Consensus 189 ~~~~~---~~~~~~~~~v~~~G~lyw~~~~~-----~~~~~--------~~~il~fD~~~~~~~~i~l--------P~~~ 244 (376)
..... |..+..+.++.+++++|..++.- +.... ...+-++++++..|..+-+ |...
T Consensus 244 kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~R 323 (830)
T KOG4152|consen 244 KPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRAR 323 (830)
T ss_pred cccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeecccccccccccc
Confidence 76432 23344678899999999887532 11000 1368889999999987632 2222
Q ss_pred hccCCccceEEeCCeEEEEEccC
Q 017140 245 LARRSESELIVYSGRPAIADHLL 267 (376)
Q Consensus 245 ~~~~~~~~l~~~~G~L~l~~~~~ 267 (376)
. .-+.+..+.+||+-+..+
T Consensus 324 A----GHCAvAigtRlYiWSGRD 342 (830)
T KOG4152|consen 324 A----GHCAVAIGTRLYIWSGRD 342 (830)
T ss_pred c----cceeEEeccEEEEEeccc
Confidence 1 233456677888877654
No 80
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=51.54 E-value=1.7e+02 Score=25.68 Aligned_cols=115 Identities=17% Similarity=0.120 Sum_probs=64.6
Q ss_pred eEE--CceEEEEEecCCCCCCccEEEEEEcCCcceEEEecChhhhccCCccceEE-eCCeEEEEEccCCCCCeEEEEEec
Q 017140 203 VCV--DGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIV-YSGRPAIADHLLLEDATMTIWVLD 279 (376)
Q Consensus 203 v~~--~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~-~~G~L~l~~~~~~~~~~l~IW~l~ 279 (376)
++. +|.+||...... .|..+|+.+.....+.+|.... .... -+|+|+++.. ..+.+.
T Consensus 6 ~~d~~~g~l~~~D~~~~------~i~~~~~~~~~~~~~~~~~~~G------~~~~~~~g~l~v~~~-----~~~~~~--- 65 (246)
T PF08450_consen 6 VWDPRDGRLYWVDIPGG------RIYRVDPDTGEVEVIDLPGPNG------MAFDRPDGRLYVADS-----GGIAVV--- 65 (246)
T ss_dssp EEETTTTEEEEEETTTT------EEEEEETTTTEEEEEESSSEEE------EEEECTTSEEEEEET-----TCEEEE---
T ss_pred EEECCCCEEEEEEcCCC------EEEEEECCCCeEEEEecCCCce------EEEEccCCEEEEEEc-----CceEEE---
Confidence 445 689999976553 8999999999999888887221 1223 4688887765 223222
Q ss_pred cCCCCCeEEEEEEcCCCcccccccccccceeEEee-cCCeEEEeecccC---CC--cEEEEEeCCCCcEEEE
Q 017140 280 ENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIG-RNNELLLVPQTVS---DS--VYVIHYDVVNRSMRRA 345 (376)
Q Consensus 280 ~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~-~~g~ill~~~~~~---~~--~~l~~ydl~t~~~~~v 345 (376)
+...+.++.+. ..+..-.. ... . -.++. .+|.+++-..... .. ..++.+++. ++.+.+
T Consensus 66 d~~~g~~~~~~-~~~~~~~~-~~~----~-ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~ 129 (246)
T PF08450_consen 66 DPDTGKVTVLA-DLPDGGVP-FNR----P-NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVV 129 (246)
T ss_dssp ETTTTEEEEEE-EEETTCSC-TEE----E-EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEE
T ss_pred ecCCCcEEEEe-eccCCCcc-cCC----C-ceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEE
Confidence 43455666553 22211000 111 1 12222 6788766542110 11 568889988 665554
No 81
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=49.59 E-value=9.9 Score=35.36 Aligned_cols=39 Identities=13% Similarity=0.197 Sum_probs=32.4
Q ss_pred CCCCCCCHHHHHHHhcCCC--------ccccceeeeccccchhhccC
Q 017140 9 SSSKPIPSEIIYDILTKLP--------IKSLMRFRCLSKLCSSYITA 47 (376)
Q Consensus 9 ~~~~~LP~Dll~~IL~rLP--------~~~l~r~r~VCK~W~~li~s 47 (376)
+.++.||.++|.+|+.|.. -+.++.+..|||.|+.+..+
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~ 89 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKE 89 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccc
Confidence 3567899999999999987 24688999999999987654
No 82
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=48.96 E-value=8.5 Score=34.50 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=35.1
Q ss_pred CCCCCCCCHHHHHHHhcCCC-ccccceeeeccccchhhccChhhHh
Q 017140 8 PSSSKPIPSEIIYDILTKLP-IKSLMRFRCLSKLCSSYITAPSFAE 52 (376)
Q Consensus 8 ~~~~~~LP~Dll~~IL~rLP-~~~l~r~r~VCK~W~~li~s~~F~~ 52 (376)
.....+||.+++.+||.||| -.+|..+..|--.-..++++...-+
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWk 244 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWK 244 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHH
Confidence 34567899999999999999 8899888888766666666554433
No 83
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=47.88 E-value=50 Score=18.53 Aligned_cols=26 Identities=35% Similarity=0.368 Sum_probs=18.2
Q ss_pred eEECceEEEEEecCCCCCCccEEEEEEcCCcce
Q 017140 203 VCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESF 235 (376)
Q Consensus 203 v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~ 235 (376)
+..+|.+|...... .+.++|.++++-
T Consensus 3 ~~~~~~v~~~~~~g-------~l~a~d~~~G~~ 28 (33)
T smart00564 3 VLSDGTVYVGSTDG-------TLYALDAKTGEI 28 (33)
T ss_pred EEECCEEEEEcCCC-------EEEEEEcccCcE
Confidence 45677888765442 899999976543
No 84
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=47.87 E-value=2.7e+02 Score=26.96 Aligned_cols=71 Identities=20% Similarity=0.438 Sum_probs=39.9
Q ss_pred EEeCCeEEEEEccCCCCCeEEEEEeccCCCCCeEEEEEEcCCCccccccccccccee--EEee-cCCeEEEeecccCCCc
Q 017140 254 IVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFV--DCIG-RNNELLLVPQTVSDSV 330 (376)
Q Consensus 254 ~~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~--~~~~-~~g~ill~~~~~~~~~ 330 (376)
..-+|++.++.. ...++.+|-+++ |..+. ..++. -.+ .|. .+.| .+.+.+.. ++++.
T Consensus 403 iS~d~k~~LvnL---~~qei~LWDl~e-----~~lv~----kY~Gh-kq~----~fiIrSCFgg~~~~fiaS---GSED~ 462 (519)
T KOG0293|consen 403 ISKDGKLALVNL---QDQEIHLWDLEE-----NKLVR----KYFGH-KQG----HFIIRSCFGGGNDKFIAS---GSEDS 462 (519)
T ss_pred EcCCCcEEEEEc---ccCeeEEeecch-----hhHHH----Hhhcc-ccc----ceEEEeccCCCCcceEEe---cCCCc
Confidence 345889999988 788999999973 44331 00111 011 111 1222 33344444 34677
Q ss_pred EEEEEeCCCCcEEE
Q 017140 331 YVIHYDVVNRSMRR 344 (376)
Q Consensus 331 ~l~~ydl~t~~~~~ 344 (376)
+++..|.+++++-.
T Consensus 463 kvyIWhr~sgkll~ 476 (519)
T KOG0293|consen 463 KVYIWHRISGKLLA 476 (519)
T ss_pred eEEEEEccCCceeE
Confidence 78888887777543
No 85
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=47.15 E-value=3.6e+02 Score=28.27 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=34.0
Q ss_pred EEEEEEcCC-cceEEEecChhhhccCCccceE-EeCCeEEEEEccCCCCCeEEEEEec
Q 017140 224 VLIAFDLHE-ESFRVIEIPAKALARRSESELI-VYSGRPAIADHLLLEDATMTIWVLD 279 (376)
Q Consensus 224 ~il~fD~~~-~~~~~i~lP~~~~~~~~~~~l~-~~~G~L~l~~~~~~~~~~l~IW~l~ 279 (376)
.+-++|+.. ..|+.+..|.... -..+. .-.|.|.++... +.-.|-||.++
T Consensus 415 tVRAwDlkRYrNfRTft~P~p~Q----fscvavD~sGelV~AG~~--d~F~IfvWS~q 466 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTSPEPIQ----FSCVAVDPSGELVCAGAQ--DSFEIFVWSVQ 466 (893)
T ss_pred eEEeeeecccceeeeecCCCcee----eeEEEEcCCCCEEEeecc--ceEEEEEEEee
Confidence 799999976 5688888887765 22233 334777666552 56678888776
No 86
>PF13854 Kelch_5: Kelch motif
Probab=44.24 E-value=60 Score=19.81 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=23.9
Q ss_pred cCCCcceEECceEEEEEecCC-CCCCccEEEEEEcCC
Q 017140 197 YPQRESVCVDGFVYFRSWVST-HKNGRTVLIAFDLHE 232 (376)
Q Consensus 197 ~~~~~~v~~~G~lyw~~~~~~-~~~~~~~il~fD~~~ 232 (376)
+..+.++.+++.+|..++... .......+..+|+.+
T Consensus 5 R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 5 RYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred ccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 345677889999999998762 221124677777764
No 87
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=43.17 E-value=2.7e+02 Score=25.85 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=35.1
Q ss_pred ceEEEEEecCCCCCCccEEEEEEcCCcceEEEecChhhhccCCccceEEeCCeEEEEE
Q 017140 207 GFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIAD 264 (376)
Q Consensus 207 G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~ 264 (376)
+.+||...... .|..+|+++..-+.++.|.... ...+..-+|.|..+.
T Consensus 37 ~~L~w~DI~~~------~i~r~~~~~g~~~~~~~p~~~~----~~~~~d~~g~Lv~~~ 84 (307)
T COG3386 37 GALLWVDILGG------RIHRLDPETGKKRVFPSPGGFS----SGALIDAGGRLIACE 84 (307)
T ss_pred CEEEEEeCCCC------eEEEecCCcCceEEEECCCCcc----cceeecCCCeEEEEc
Confidence 46899877663 8999999999999999998764 444455556655543
No 88
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=39.86 E-value=53 Score=32.39 Aligned_cols=116 Identities=10% Similarity=0.117 Sum_probs=65.4
Q ss_pred EEEeEeCCCCcEEEEEEeecCCCCCcEEEEEeCCCceEECcCCC---CccCCCcceEECc--eEEEEEecCCC-----CC
Q 017140 151 NSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTNSWRPLKGGP---NYYPQRESVCVDG--FVYFRSWVSTH-----KN 220 (376)
Q Consensus 151 ~~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~---~~~~~~~~v~~~G--~lyw~~~~~~~-----~~ 220 (376)
..+.+++.++...+.+-++.-.....+++|+.+.+.|..+.... ..+..+..|..-- ++|.++..-+. ..
T Consensus 264 HQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s 343 (723)
T KOG2437|consen 264 HQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKS 343 (723)
T ss_pred ceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccc
Confidence 55666665554444332211123456889999999998875443 2233455554433 78887753321 12
Q ss_pred CccEEEEEEcCCcceEEEecChhhhccC---CccceEEe--CCeEEEEEcc
Q 017140 221 GRTVLIAFDLHEESFRVIEIPAKALARR---SESELIVY--SGRPAIADHL 266 (376)
Q Consensus 221 ~~~~il~fD~~~~~~~~i~lP~~~~~~~---~~~~l~~~--~G~L~l~~~~ 266 (376)
++-.+-.||.++..|..+..-.....+. ..-.+++- +|-||+...+
T Consensus 344 ~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr 394 (723)
T KOG2437|consen 344 LRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGR 394 (723)
T ss_pred cccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCe
Confidence 3357999999999999985433221100 12223333 3458887664
No 89
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=38.02 E-value=72 Score=25.04 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=26.2
Q ss_pred cCCeEEEeecc-cCCCcEEEEEeCCCCcEEEEEEe
Q 017140 315 RNNELLLVPQT-VSDSVYVIHYDVVNRSMRRAEIF 348 (376)
Q Consensus 315 ~~g~ill~~~~-~~~~~~l~~ydl~t~~~~~v~~~ 348 (376)
-+|-+++.... ......+++||+++++++.+...
T Consensus 4 inGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P 38 (129)
T PF08268_consen 4 INGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLP 38 (129)
T ss_pred ECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEee
Confidence 47777777543 23467899999999999999885
No 90
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=37.90 E-value=4.8e+02 Score=27.02 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=31.8
Q ss_pred EEEEEEcCCcceEEEecChhhhccCCccceEEeCCeEEEEEccCCCCCeEEEEEec
Q 017140 224 VLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLD 279 (376)
Q Consensus 224 ~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW~l~ 279 (376)
.|.--|++.|...++....... +.+. ...++.+.+.+. ++++++||.-+
T Consensus 201 ~Ir~w~~~ge~l~~~~ghtn~v---Ysis-~~~~~~~Ivs~g---EDrtlriW~~~ 249 (745)
T KOG0301|consen 201 SIRLWDLDGEVLLEMHGHTNFV---YSIS-MALSDGLIVSTG---EDRTLRIWKKD 249 (745)
T ss_pred eEEEEeccCceeeeeeccceEE---EEEE-ecCCCCeEEEec---CCceEEEeecC
Confidence 6666677777766665433322 1111 355777877777 78999999876
No 91
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.37 E-value=97 Score=29.24 Aligned_cols=45 Identities=11% Similarity=0.126 Sum_probs=35.7
Q ss_pred CCcEEEEEeCCCceEECcCCCCccCCCcceEECceEEEEEecCCC
Q 017140 174 DPEYRIFELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTH 218 (376)
Q Consensus 174 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~ 218 (376)
...-+||-...++|+.+...|......-++..++.+|.+..+...
T Consensus 317 ~w~~~Vy~~d~g~Wk~~GeLp~~l~YG~s~~~nn~vl~IGGE~~~ 361 (381)
T COG3055 317 SWNSEVYIFDNGSWKIVGELPQGLAYGVSLSYNNKVLLIGGETSG 361 (381)
T ss_pred hhhceEEEEcCCceeeecccCCCccceEEEecCCcEEEEccccCC
Confidence 445677788899999999998755566678889999999987643
No 92
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=36.45 E-value=3.6e+02 Score=25.19 Aligned_cols=172 Identities=15% Similarity=0.244 Sum_probs=84.1
Q ss_pred EEEeEeCCCCcEEEEEEeecCCCCCcEEEEEeCCCc--eEECcCC--CCcc-CCCcceEECce-EEEEEecCCCCCCccE
Q 017140 151 NSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTNS--WRPLKGG--PNYY-PQRESVCVDGF-VYFRSWVSTHKNGRTV 224 (376)
Q Consensus 151 ~~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~~~~--W~~~~~~--~~~~-~~~~~v~~~G~-lyw~~~~~~~~~~~~~ 224 (376)
+.+.++| +++|-++.-. ....+.+|+...+. ....... +... +.+-...-+|+ +|.+..... .
T Consensus 147 H~v~~~p-dg~~v~v~dl----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~------~ 215 (345)
T PF10282_consen 147 HQVVFSP-DGRFVYVPDL----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSN------T 215 (345)
T ss_dssp EEEEE-T-TSSEEEEEET----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTT------E
T ss_pred eeEEECC-CCCEEEEEec----CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCC------c
Confidence 6667777 3455444411 15589999998765 5432111 1111 11111222565 555554432 6
Q ss_pred EEEEEcC--CcceEEEe----cChhhhccCCccceE-EeCC-eEEEEEccCCCCCeEEEEEeccCCCCCeEEEEEEcCCC
Q 017140 225 LIAFDLH--EESFRVIE----IPAKALARRSESELI-VYSG-RPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPED 296 (376)
Q Consensus 225 il~fD~~--~~~~~~i~----lP~~~~~~~~~~~l~-~~~G-~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~~~lp~~ 296 (376)
|.+|+.. +..+..++ +|...........+. .-+| .||+... ..+.|.++.++.. .+.-+.+. ..+..
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr---~~~sI~vf~~d~~-~g~l~~~~-~~~~~ 290 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR---GSNSISVFDLDPA-TGTLTLVQ-TVPTG 290 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC---TTTEEEEEEECTT-TTTEEEEE-EEEES
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec---cCCEEEEEEEecC-CCceEEEE-EEeCC
Confidence 7777776 66666653 344322111122222 2345 4555544 6788999999543 23344432 22211
Q ss_pred cccccccccccceeEEeecCCeEEEeecccCCCcEEEEEeCCCCcEEEEE
Q 017140 297 YGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRAE 346 (376)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~l~~ydl~t~~~~~v~ 346 (376)
+. .+.-..+..+|+.+++.....+.-.+|..|.++++++.+.
T Consensus 291 ------G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 291 ------GK--FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ------SS--SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred ------CC--CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 10 1101122368888887644334444555677899998885
No 93
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=36.41 E-value=3.4e+02 Score=24.84 Aligned_cols=136 Identities=16% Similarity=0.190 Sum_probs=71.4
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEEEeecCCCCCcEEEEEeCCCceEECcCCCCcc
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTNSWRPLKGGPNYY 197 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~ 197 (376)
.+.++|-++.... .+ -.... ...+..+-|.|...+..++... ....+.|.++++-+=+..-......
T Consensus 128 Tiklwnt~g~ck~------t~--~~~~~-~~WVscvrfsP~~~~p~Ivs~s----~DktvKvWnl~~~~l~~~~~gh~~~ 194 (315)
T KOG0279|consen 128 TIKLWNTLGVCKY------TI--HEDSH-REWVSCVRFSPNESNPIIVSAS----WDKTVKVWNLRNCQLRTTFIGHSGY 194 (315)
T ss_pred eeeeeeecccEEE------EE--ecCCC-cCcEEEEEEcCCCCCcEEEEcc----CCceEEEEccCCcchhhcccccccc
Confidence 4666666666655 44 22210 1223556666665555454422 2446777777765433211111111
Q ss_pred CCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEecChhhhccCCccceEEeCCeEEEEEccCCCCCeEEEEE
Q 017140 198 PQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWV 277 (376)
Q Consensus 198 ~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW~ 277 (376)
...-.|..+|.+---++.+ ..++--|+...+- ..-++.... ...++-...+..++.. ....+.||.
T Consensus 195 v~t~~vSpDGslcasGgkd------g~~~LwdL~~~k~-lysl~a~~~----v~sl~fspnrywL~~a---t~~sIkIwd 260 (315)
T KOG0279|consen 195 VNTVTVSPDGSLCASGGKD------GEAMLWDLNEGKN-LYSLEAFDI----VNSLCFSPNRYWLCAA---TATSIKIWD 260 (315)
T ss_pred EEEEEECCCCCEEecCCCC------ceEEEEEccCCce-eEeccCCCe----EeeEEecCCceeEeec---cCCceEEEe
Confidence 2333456677665444433 3677778865443 222333221 3345666777777766 556799999
Q ss_pred ecc
Q 017140 278 LDE 280 (376)
Q Consensus 278 l~~ 280 (376)
++.
T Consensus 261 l~~ 263 (315)
T KOG0279|consen 261 LES 263 (315)
T ss_pred ccc
Confidence 974
No 94
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=36.32 E-value=2.8e+02 Score=23.79 Aligned_cols=189 Identities=12% Similarity=0.097 Sum_probs=89.2
Q ss_pred eeeEE-Ee-cCCeeEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEEEeecCCCCCcEEEEEeCC
Q 017140 107 VNGII-LM-DFGLYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGT 184 (376)
Q Consensus 107 ~~Gll-~~-~~~~~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~~ 184 (376)
.+|.+ .. .+. .++.+|+.|++.. -- -........ .....+. +|+.... ...+..++..+
T Consensus 35 ~~~~v~~~~~~~-~l~~~d~~tG~~~------W~--~~~~~~~~~-~~~~~~~-----~v~v~~~----~~~l~~~d~~t 95 (238)
T PF13360_consen 35 DGGRVYVASGDG-NLYALDAKTGKVL------WR--FDLPGPISG-APVVDGG-----RVYVGTS----DGSLYALDAKT 95 (238)
T ss_dssp ETTEEEEEETTS-EEEEEETTTSEEE------EE--EECSSCGGS-GEEEETT-----EEEEEET----TSEEEEEETTT
T ss_pred eCCEEEEEcCCC-EEEEEECCCCCEE------EE--eeccccccc-eeeeccc-----ccccccc----eeeeEecccCC
Confidence 56667 44 455 8999999999876 22 111111000 1111111 2222111 22677777677
Q ss_pred C--ceEE-CcCCCC-ccC-CCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEE-EecChhh--hc----cCCccc
Q 017140 185 N--SWRP-LKGGPN-YYP-QRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRV-IEIPAKA--LA----RRSESE 252 (376)
Q Consensus 185 ~--~W~~-~~~~~~-~~~-~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~-i~lP~~~--~~----~~~~~~ 252 (376)
| .|+. ....+. ... .......++.+|..... ..|.++|+++.+-.. .+.+... .. ......
T Consensus 96 G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~ 168 (238)
T PF13360_consen 96 GKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS-------GKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGS 168 (238)
T ss_dssp SCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC-------SEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEE
T ss_pred cceeeeeccccccccccccccCceEecCEEEEEecc-------CcEEEEecCCCcEEEEeecCCCCCCcceeeecccccc
Confidence 7 7983 433221 122 22233345566665543 289999998765422 2332211 10 001233
Q ss_pred eEEeCCeEEEEEccCCCCCeEEEEEeccCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccCCCcEE
Q 017140 253 LIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYV 332 (376)
Q Consensus 253 l~~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~l 332 (376)
++..+|.+++... +...+.+ -++. +...|... +.. . . ..+. ..|+.+++. .....+
T Consensus 169 ~~~~~~~v~~~~~---~g~~~~~-d~~t-g~~~w~~~----~~~----~------~-~~~~-~~~~~l~~~---~~~~~l 224 (238)
T PF13360_consen 169 PVISDGRVYVSSG---DGRVVAV-DLAT-GEKLWSKP----ISG----I------Y-SLPS-VDGGTLYVT---SSDGRL 224 (238)
T ss_dssp EECCTTEEEEECC---TSSEEEE-ETTT-TEEEEEEC----SS-----E------C-ECEE-CCCTEEEEE---ETTTEE
T ss_pred eEEECCEEEEEcC---CCeEEEE-ECCC-CCEEEEec----CCC----c------c-CCce-eeCCEEEEE---eCCCEE
Confidence 3444677777655 3332333 2221 11136221 111 0 0 1022 344444443 246899
Q ss_pred EEEeCCCCcEEEE
Q 017140 333 IHYDVVNRSMRRA 345 (376)
Q Consensus 333 ~~ydl~t~~~~~v 345 (376)
+++|++|++..+.
T Consensus 225 ~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 225 YALDLKTGKVVWQ 237 (238)
T ss_dssp EEEETTTTEEEEE
T ss_pred EEEECCCCCEEeE
Confidence 9999999998764
No 95
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=34.35 E-value=4e+02 Score=25.09 Aligned_cols=113 Identities=16% Similarity=0.213 Sum_probs=66.6
Q ss_pred cEEEEEEcCCcceEEE---ecChhhhccCCccceEEeCCeEEEEEccCCCCCeEEEEEeccCCCCCeEEEE--EEcCCCc
Q 017140 223 TVLIAFDLHEESFRVI---EIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIK--VFLPEDY 297 (376)
Q Consensus 223 ~~il~fD~~~~~~~~i---~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~--~~lp~~~ 297 (376)
..|..||++....... .++++.. .+++ ..--+|+++.+..+ -..++.+|..+.. .++-..+. -.+|..|
T Consensus 167 Dri~~y~~~dg~L~~~~~~~v~~G~G--PRHi-~FHpn~k~aY~v~E--L~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 167 DRIFLYDLDDGKLTPADPAEVKPGAG--PRHI-VFHPNGKYAYLVNE--LNSTVDVLEYNPA-VGKFEELQTIDTLPEDF 240 (346)
T ss_pred ceEEEEEcccCccccccccccCCCCC--cceE-EEcCCCcEEEEEec--cCCEEEEEEEcCC-CceEEEeeeeccCcccc
Confidence 3666666665544332 2333221 1121 22346777666552 5788999999865 45555552 3578774
Q ss_pred ccccccccccceeEEee--cCCeEEEeecccCCCcEEEEEeCCCCcEEEEEEe
Q 017140 298 GEEILEEDIDYFVDCIG--RNNELLLVPQTVSDSVYVIHYDVVNRSMRRAEIF 348 (376)
Q Consensus 298 ~~~~~~~~~~~~~~~~~--~~g~ill~~~~~~~~~~l~~ydl~t~~~~~v~~~ 348 (376)
. +. .. ...+. .+|..++.++-..+.-.+|.-|..+++++-+.+.
T Consensus 241 ~----g~--~~-~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~ 286 (346)
T COG2706 241 T----GT--NW-AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT 286 (346)
T ss_pred C----CC--Cc-eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe
Confidence 4 21 11 22232 7999888764334556688899999998888765
No 96
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=32.70 E-value=3.6e+02 Score=24.10 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=69.9
Q ss_pred cCCeeEEEEcCCCCceeeCCCceeecCCCCCCcccee-EEEeEeCCCCcEEEEEEeecCCCCCcEEEEEeCCC----ceE
Q 017140 114 DFGLYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCV-NSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTN----SWR 188 (376)
Q Consensus 114 ~~~~~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~-~~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~~~----~W~ 188 (376)
.+. .+-+|||..+... .- -.... .... .++.+|.. |+..- +....+.+++..+| .||
T Consensus 37 sdr-tvrLWNp~rg~li------kt--YsghG-~EVlD~~~s~Dns----kf~s~----GgDk~v~vwDV~TGkv~Rr~r 98 (307)
T KOG0316|consen 37 SDR-TVRLWNPLRGALI------KT--YSGHG-HEVLDAALSSDNS----KFASC----GGDKAVQVWDVNTGKVDRRFR 98 (307)
T ss_pred CCc-eEEeeccccccee------ee--ecCCC-ceeeecccccccc----ccccC----CCCceEEEEEcccCeeeeecc
Confidence 344 7899999988876 33 22211 1111 33333331 22221 23557888898888 454
Q ss_pred ECcCCCC--ccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEecChhhhccCCccceEEeCCeEEEEEcc
Q 017140 189 PLKGGPN--YYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHL 266 (376)
Q Consensus 189 ~~~~~~~--~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~ 266 (376)
-....-. .+-...+|.+.|.+ + ..+-++|..+.++..|+.=....+ ...-+...+...+...
T Consensus 99 gH~aqVNtV~fNeesSVv~Sgsf-------D-----~s~r~wDCRS~s~ePiQildea~D---~V~Si~v~~heIvaGS- 162 (307)
T KOG0316|consen 99 GHLAQVNTVRFNEESSVVASGSF-------D-----SSVRLWDCRSRSFEPIQILDEAKD---GVSSIDVAEHEIVAGS- 162 (307)
T ss_pred cccceeeEEEecCcceEEEeccc-------c-----ceeEEEEcccCCCCccchhhhhcC---ceeEEEecccEEEeec-
Confidence 3322211 11122334433322 1 378899999999998887665542 3444556666666665
Q ss_pred CCCCCeEEEEEec
Q 017140 267 LLEDATMTIWVLD 279 (376)
Q Consensus 267 ~~~~~~l~IW~l~ 279 (376)
.+..++.+-+.
T Consensus 163 --~DGtvRtydiR 173 (307)
T KOG0316|consen 163 --VDGTVRTYDIR 173 (307)
T ss_pred --cCCcEEEEEee
Confidence 44555555443
No 97
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=32.52 E-value=4.8e+02 Score=25.45 Aligned_cols=116 Identities=15% Similarity=0.192 Sum_probs=68.2
Q ss_pred eEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEecChhhhccCCccc-eEEeCCeEEEEEccCCCCCeEEEEEeccC
Q 017140 203 VCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESE-LIVYSGRPAIADHLLLEDATMTIWVLDEN 281 (376)
Q Consensus 203 v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~-l~~~~G~L~l~~~~~~~~~~l~IW~l~~~ 281 (376)
++=||.++-.+..+. .+=.+|+.+.. ..-.+|.+.. ... +.=.++.-+|+... ++.++.+|-|...
T Consensus 355 fHpDgLifgtgt~d~------~vkiwdlks~~-~~a~Fpght~----~vk~i~FsENGY~Lat~a--dd~~V~lwDLRKl 421 (506)
T KOG0289|consen 355 FHPDGLIFGTGTPDG------VVKIWDLKSQT-NVAKFPGHTG----PVKAISFSENGYWLATAA--DDGSVKLWDLRKL 421 (506)
T ss_pred EcCCceEEeccCCCc------eEEEEEcCCcc-ccccCCCCCC----ceeEEEeccCceEEEEEe--cCCeEEEEEehhh
Confidence 444677776665542 67788998776 5557777443 222 22234455555552 5666999999854
Q ss_pred CCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccCCCcEEEEEeCCCCcEEEEEE
Q 017140 282 DGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRAEI 347 (376)
Q Consensus 282 ~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~l~~ydl~t~~~~~v~~ 347 (376)
.. ...+.++..+ +. .. ...+..|..+.+. +++-.|+.|+-+++.|+++..
T Consensus 422 ~n----~kt~~l~~~~-----~v--~s--~~fD~SGt~L~~~---g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 422 KN----FKTIQLDEKK-----EV--NS--LSFDQSGTYLGIA---GSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred cc----cceeeccccc-----cc--ee--EEEcCCCCeEEee---cceeEEEEEecccccceeeeh
Confidence 21 1133444321 10 01 1122466655553 467789999999999999863
No 98
>PRK04792 tolB translocation protein TolB; Provisional
Probab=32.16 E-value=4.9e+02 Score=25.45 Aligned_cols=191 Identities=13% Similarity=0.086 Sum_probs=93.7
Q ss_pred eeEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEEEeecCCCCCcEEEEEeCCCceEECcCCCCc
Q 017140 117 LYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTNSWRPLKGGPNY 196 (376)
Q Consensus 117 ~~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~ 196 (376)
.++++.|..|++.. .+ ...... .....+.|. +++-++..... ....+.+++.+++..+.+......
T Consensus 242 ~~L~~~dl~tg~~~------~l--t~~~g~---~~~~~wSPD-G~~La~~~~~~--g~~~Iy~~dl~tg~~~~lt~~~~~ 307 (448)
T PRK04792 242 AEIFVQDIYTQVRE------KV--TSFPGI---NGAPRFSPD-GKKLALVLSKD--GQPEIYVVDIATKALTRITRHRAI 307 (448)
T ss_pred cEEEEEECCCCCeE------Ee--cCCCCC---cCCeeECCC-CCEEEEEEeCC--CCeEEEEEECCCCCeEECccCCCC
Confidence 37999999998877 55 322111 023344443 33333322222 245677888888887776443211
Q ss_pred cCCCcceEECce-EEEEEecCCCCCCccEEEEEEcCCcceEEEecChhhhccCCccceEEeCC-eEEEEEccCCCCCeEE
Q 017140 197 YPQRESVCVDGF-VYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSG-RPAIADHLLLEDATMT 274 (376)
Q Consensus 197 ~~~~~~v~~~G~-lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~G-~L~l~~~~~~~~~~l~ 274 (376)
.......-+|. +++...... . ..|..+|+++.+...+....... ....+ .-+| .|++... ......
T Consensus 308 -~~~p~wSpDG~~I~f~s~~~g-~---~~Iy~~dl~~g~~~~Lt~~g~~~---~~~~~-SpDG~~l~~~~~---~~g~~~ 375 (448)
T PRK04792 308 -DTEPSWHPDGKSLIFTSERGG-K---PQIYRVNLASGKVSRLTFEGEQN---LGGSI-TPDGRSMIMVNR---TNGKFN 375 (448)
T ss_pred -ccceEECCCCCEEEEEECCCC-C---ceEEEEECCCCCEEEEecCCCCC---cCeeE-CCCCCEEEEEEe---cCCceE
Confidence 11111223554 555443221 1 37999999888877664221111 11122 2244 5555444 345678
Q ss_pred EEEeccCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccCCCcEEEEEeCCCCcEEEEEE
Q 017140 275 IWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRAEI 347 (376)
Q Consensus 275 IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~l~~ydl~t~~~~~v~~ 347 (376)
||.++-. .+....+. .. ... .. .. ...+|..++..........++.+|.+.+..+++..
T Consensus 376 I~~~dl~-~g~~~~lt----~~----~~d---~~-ps-~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~ 434 (448)
T PRK04792 376 IARQDLE-TGAMQVLT----ST----RLD---ES-PS-VAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPA 434 (448)
T ss_pred EEEEECC-CCCeEEcc----CC----CCC---CC-ce-ECCCCCEEEEEEecCCceEEEEEECCCCceEECcC
Confidence 8888633 33333321 11 011 11 11 22466544433222233458888987776666643
No 99
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=31.21 E-value=85 Score=24.72 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=19.0
Q ss_pred CcEEEEEeCCCCcEEEEEEeccC
Q 017140 329 SVYVIHYDVVNRSMRRAEIFGLP 351 (376)
Q Consensus 329 ~~~l~~ydl~t~~~~~v~~~~~~ 351 (376)
...++.||..+++|++.+++|.-
T Consensus 28 ~v~vY~f~~~~~~W~K~~iEG~L 50 (122)
T PF06058_consen 28 HVVVYKFDHETNEWEKTDIEGTL 50 (122)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEE
T ss_pred eEEEEeecCCCCcEeecCcEeeE
Confidence 34678888999999999998874
No 100
>PLN02772 guanylate kinase
Probab=31.04 E-value=3.8e+02 Score=25.90 Aligned_cols=42 Identities=12% Similarity=0.171 Sum_probs=29.6
Q ss_pred cceEEeCCeEEEEEccCCCC-CeEEEEEeccCCCCCeEEEEEEc
Q 017140 251 SELIVYSGRPAIADHLLLED-ATMTIWVLDENDGDYWVQIKVFL 293 (376)
Q Consensus 251 ~~l~~~~G~L~l~~~~~~~~-~~l~IW~l~~~~~~~W~~~~~~l 293 (376)
-..++.++++|++....... .+..+|+++. ....|+.-.+..
T Consensus 28 ~tav~igdk~yv~GG~~d~~~~~~~v~i~D~-~t~~W~~P~V~G 70 (398)
T PLN02772 28 ETSVTIGDKTYVIGGNHEGNTLSIGVQILDK-ITNNWVSPIVLG 70 (398)
T ss_pred ceeEEECCEEEEEcccCCCccccceEEEEEC-CCCcEecccccC
Confidence 34578899999998743332 5678999964 366899865544
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=28.94 E-value=5.6e+02 Score=25.05 Aligned_cols=102 Identities=16% Similarity=0.260 Sum_probs=61.2
Q ss_pred CCcEEEEEeCCCceEECcCCCCccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCC-cceEEEecChhhhccCCccc
Q 017140 174 DPEYRIFELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHE-ESFRVIEIPAKALARRSESE 252 (376)
Q Consensus 174 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~-~~~~~i~lP~~~~~~~~~~~ 252 (376)
...+.||++..+. .+...+.+...-..+.+...=||+....+- ..|..+|+.. +.|..++++..... ...
T Consensus 368 d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add----~~V~lwDLRKl~n~kt~~l~~~~~v---~s~ 438 (506)
T KOG0289|consen 368 DGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD----GSVKLWDLRKLKNFKTIQLDEKKEV---NSL 438 (506)
T ss_pred CceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC----CeEEEEEehhhcccceeeccccccc---eeE
Confidence 4566777777665 334444443334567777777999865431 2699999975 56788888875321 111
Q ss_pred eEEeCCeEEEEEccCCCCCeEEEEEeccCCCCCeEEEE
Q 017140 253 LIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIK 290 (376)
Q Consensus 253 l~~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~ 290 (376)
-....|....+.. ..+.|...+.- +.+|+++.
T Consensus 439 ~fD~SGt~L~~~g-----~~l~Vy~~~k~-~k~W~~~~ 470 (506)
T KOG0289|consen 439 SFDQSGTYLGIAG-----SDLQVYICKKK-TKSWTEIK 470 (506)
T ss_pred EEcCCCCeEEeec-----ceeEEEEEecc-cccceeee
Confidence 1233455444433 56777777643 45899873
No 102
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=28.91 E-value=5.7e+02 Score=25.16 Aligned_cols=115 Identities=11% Similarity=0.112 Sum_probs=59.7
Q ss_pred EECce-EEEEEecCCCCCCccEEEEEEcCCcceEEEecChhhhccCCccceEEeCCeEEEEEccCCCCCeEEEEEeccCC
Q 017140 204 CVDGF-VYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDEND 282 (376)
Q Consensus 204 ~~~G~-lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW~l~~~~ 282 (376)
.-+|. .-+..+.. .++.+||+.+.+...+..|...........-+.-++...++.. ....|.+--.+
T Consensus 266 ~p~G~~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G---~~G~I~lLhak--- 333 (514)
T KOG2055|consen 266 APNGHSVIFTSGRR------KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG---NNGHIHLLHAK--- 333 (514)
T ss_pred cCCCceEEEecccc------eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc---cCceEEeehhh---
Confidence 33665 44444443 3899999999999998877665421111111122333323323 33444444433
Q ss_pred CCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccCCCcEEEEEeCCCCcEEEE
Q 017140 283 GDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRA 345 (376)
Q Consensus 283 ~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~l~~ydl~t~~~~~v 345 (376)
+++|..- +.++- .+. . + ....+|+.++.+. ....|+.+|++++.....
T Consensus 334 T~eli~s-~KieG-----~v~----~-~-~fsSdsk~l~~~~---~~GeV~v~nl~~~~~~~r 381 (514)
T KOG2055|consen 334 TKELITS-FKIEG-----VVS----D-F-TFSSDSKELLASG---GTGEVYVWNLRQNSCLHR 381 (514)
T ss_pred hhhhhhe-eeecc-----EEe----e-E-EEecCCcEEEEEc---CCceEEEEecCCcceEEE
Confidence 3345432 12221 111 1 1 1115777666642 456899999999976554
No 103
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=28.36 E-value=69 Score=23.67 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=14.8
Q ss_pred CCcEEEEEeCCCCcEEEEE
Q 017140 328 DSVYVIHYDVVNRSMRRAE 346 (376)
Q Consensus 328 ~~~~l~~ydl~t~~~~~v~ 346 (376)
..++++.||++|++.+.+-
T Consensus 35 ~~GRll~ydp~t~~~~vl~ 53 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLL 53 (89)
T ss_dssp --EEEEEEETTTTEEEEEE
T ss_pred CCcCEEEEECCCCeEEEeh
Confidence 4567999999999987763
No 104
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=28.28 E-value=3.5e+02 Score=25.01 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=42.6
Q ss_pred CCeEEEEEccCCCCCeEEEEEeccCCCCCeEEEEEEcCCCcccccccccccceeEEee-cCCeEEEeecccCCCcEEEEE
Q 017140 257 SGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIG-RNNELLLVPQTVSDSVYVIHY 335 (376)
Q Consensus 257 ~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~-~~g~ill~~~~~~~~~~l~~y 335 (376)
+|...+... .+..+-+|...+..+.-|+.. +... .- +.+-+ .+|..++.+ +.++.+..+
T Consensus 58 ~gs~~aSgG---~Dr~I~LWnv~gdceN~~~lk---gHsg----------AV-M~l~~~~d~s~i~S~---gtDk~v~~w 117 (338)
T KOG0265|consen 58 DGSCFASGG---SDRAIVLWNVYGDCENFWVLK---GHSG----------AV-MELHGMRDGSHILSC---GTDKTVRGW 117 (338)
T ss_pred CCCeEeecC---CcceEEEEeccccccceeeec---cccc----------ee-EeeeeccCCCEEEEe---cCCceEEEE
Confidence 455444433 567888999776656678875 1111 11 22334 688888875 468889999
Q ss_pred eCCCCcE
Q 017140 336 DVVNRSM 342 (376)
Q Consensus 336 dl~t~~~ 342 (376)
|.+|++-
T Consensus 118 D~~tG~~ 124 (338)
T KOG0265|consen 118 DAETGKR 124 (338)
T ss_pred eccccee
Confidence 9999874
No 105
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=28.27 E-value=3.1e+02 Score=26.40 Aligned_cols=109 Identities=11% Similarity=0.094 Sum_probs=52.1
Q ss_pred cEEEEEEcCCcceEEEecChhhhccCCccceEEeCCeEEEEEccCCCCC-eEEEEEeccCCCCCeEEEEEEcCCCccccc
Q 017140 223 TVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDA-TMTIWVLDENDGDYWVQIKVFLPEDYGEEI 301 (376)
Q Consensus 223 ~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~-~l~IW~l~~~~~~~W~~~~~~lp~~~~~~~ 301 (376)
+.|+..|+.+.+...+---.... -.....-.+..|.+.+.+..-.. .-+||.++..+++.|-... ..+.+ .
T Consensus 168 ~~i~~idl~tG~~~~v~~~~~wl---gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~-~~~~e----~ 239 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFEDTDWL---GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR-RMEGE----S 239 (386)
T ss_dssp EEEEEEETTT--EEEEEEESS-E---EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTE----E
T ss_pred ceEEEEECCCCceeEEEecCccc---cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec-CCCCc----c
Confidence 68999999998887763211111 13333344566666666433222 2478999876655554332 22222 3
Q ss_pred ccccccceeEEeecCCe-EEEeec-ccCCCcEEEEEeCCCCcEEEE
Q 017140 302 LEEDIDYFVDCIGRNNE-LLLVPQ-TVSDSVYVIHYDVVNRSMRRA 345 (376)
Q Consensus 302 ~~~~~~~~~~~~~~~g~-ill~~~-~~~~~~~l~~ydl~t~~~~~v 345 (376)
.+ ......+|. |++... ..+...-+..||++|.+-+++
T Consensus 240 ~g------HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~ 279 (386)
T PF14583_consen 240 VG------HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL 279 (386)
T ss_dssp EE------EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE
T ss_pred cc------cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEE
Confidence 33 223334665 555433 234466899999999886654
No 106
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=27.90 E-value=80 Score=21.54 Aligned_cols=18 Identities=11% Similarity=0.268 Sum_probs=14.8
Q ss_pred CCcEEEEEeCCCCcEEEE
Q 017140 328 DSVYVIHYDVVNRSMRRA 345 (376)
Q Consensus 328 ~~~~l~~ydl~t~~~~~v 345 (376)
..-++|.||+++++++-+
T Consensus 39 ~~iKIfkyd~~tNei~L~ 56 (63)
T PF14157_consen 39 GQIKIFKYDEDTNEITLK 56 (63)
T ss_dssp TEEEEEEEETTTTEEEEE
T ss_pred CeEEEEEeCCCCCeEEEE
Confidence 345789999999998766
No 107
>PRK10115 protease 2; Provisional
Probab=27.40 E-value=7.4e+02 Score=25.96 Aligned_cols=123 Identities=9% Similarity=0.086 Sum_probs=65.9
Q ss_pred EECceEEEEEecCCCCCCccEEEEEEcC-CcceEEEecChhhhccCCccceEEeCCeEEEEEccCCCCCeEEEEEeccCC
Q 017140 204 CVDGFVYFRSWVSTHKNGRTVLIAFDLH-EESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDEND 282 (376)
Q Consensus 204 ~~~G~lyw~~~~~~~~~~~~~il~fD~~-~~~~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW~l~~~~ 282 (376)
..++.+|.....+. .. ..|+..|+. .++|..+--+.... ..-.+...++.|.+... ....-.+++++-.
T Consensus 277 ~~~~~ly~~tn~~~-~~--~~l~~~~~~~~~~~~~l~~~~~~~---~i~~~~~~~~~l~~~~~---~~g~~~l~~~~~~- 346 (686)
T PRK10115 277 HYQHRFYLRSNRHG-KN--FGLYRTRVRDEQQWEELIPPRENI---MLEGFTLFTDWLVVEER---QRGLTSLRQINRK- 346 (686)
T ss_pred eCCCEEEEEEcCCC-CC--ceEEEecCCCcccCeEEECCCCCC---EEEEEEEECCEEEEEEE---eCCEEEEEEEcCC-
Confidence 33456666654432 22 579999987 57787765342211 01123334777777766 4555667777522
Q ss_pred CCCeEEEEEEcCCCcccccccccccceeEEee---cCCeEEEeecccCCCcEEEEEeCCCCcEEEEEE
Q 017140 283 GDYWVQIKVFLPEDYGEEILEEDIDYFVDCIG---RNNELLLVPQTVSDSVYVIHYDVVNRSMRRAEI 347 (376)
Q Consensus 283 ~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~---~~g~ill~~~~~~~~~~l~~ydl~t~~~~~v~~ 347 (376)
++.... +.++.. ... . ..-.. .++.+++..........++.||+++++++.+.-
T Consensus 347 ~~~~~~--l~~~~~----~~~----~-~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 347 TREVIG--IAFDDP----AYV----T-WIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred CCceEE--ecCCCC----ceE----e-eecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEEe
Confidence 222221 122211 000 0 00011 235576666555678899999999998877653
No 108
>PRK04792 tolB translocation protein TolB; Provisional
Probab=27.24 E-value=6e+02 Score=24.85 Aligned_cols=148 Identities=9% Similarity=0.064 Sum_probs=71.9
Q ss_pred CCcEEEEEeCCCceEECcCCCCccCCCcceEECce-EEEEEecCCCCCCccEEEEEEcCCcceEEEecChhhhccCCccc
Q 017140 174 DPEYRIFELGTNSWRPLKGGPNYYPQRESVCVDGF-VYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESE 252 (376)
Q Consensus 174 ~~~~~vyss~~~~W~~~~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~ 252 (376)
...+++++..++.-+.+...... .......-+|. +++....+. ...|..+|+++.....+.-..... ....
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~-~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~~~~---~~p~ 312 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGI-NGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHRAID---TEPS 312 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCC-cCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCCCCc---cceE
Confidence 45677777777765554332211 01112223555 555443322 137999999888766543211110 1111
Q ss_pred eEEeCC-eEEEEEccCCCCCeEEEEEeccCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccCCCcE
Q 017140 253 LIVYSG-RPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVY 331 (376)
Q Consensus 253 l~~~~G-~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~ 331 (376)
. .-+| .|++... ......||.++-. .+.+.++. ....+. .. . ....+|+.++..........
T Consensus 313 w-SpDG~~I~f~s~---~~g~~~Iy~~dl~-~g~~~~Lt--~~g~~~--------~~-~-~~SpDG~~l~~~~~~~g~~~ 375 (448)
T PRK04792 313 W-HPDGKSLIFTSE---RGGKPQIYRVNLA-SGKVSRLT--FEGEQN--------LG-G-SITPDGRSMIMVNRTNGKFN 375 (448)
T ss_pred E-CCCCCEEEEEEC---CCCCceEEEEECC-CCCEEEEe--cCCCCC--------cC-e-eECCCCCEEEEEEecCCceE
Confidence 1 2245 4554433 3344678887643 34565542 111110 01 1 12246654443322233457
Q ss_pred EEEEeCCCCcEEEEE
Q 017140 332 VIHYDVVNRSMRRAE 346 (376)
Q Consensus 332 l~~ydl~t~~~~~v~ 346 (376)
++.+|+++++.+.+.
T Consensus 376 I~~~dl~~g~~~~lt 390 (448)
T PRK04792 376 IARQDLETGAMQVLT 390 (448)
T ss_pred EEEEECCCCCeEEcc
Confidence 899999999887664
No 109
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=26.58 E-value=5e+02 Score=23.72 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=45.2
Q ss_pred eEEEEcCCCCceee-CCCceeecCCCCCCc-cceeEEEeEeCCCCcE--EEEEEeecCCCCCcEEEEEeCCC-ceEECcC
Q 017140 118 YATLCNPSTRQTFN-TPFVCSLTSPSVNST-YFCVNSFGFDPVSKKY--KVLNSWAIPGRDPEYRIFELGTN-SWRPLKG 192 (376)
Q Consensus 118 ~~~V~NP~T~~~~~-~p~~~~L~~P~~~~~-~~~~~~l~~d~~~~~y--kvv~~~~~~~~~~~~~vyss~~~-~W~~~~~ 192 (376)
+++++|..|.+..+ +++ |+.... .....-+..|...+.. ..+.+.... ...+-||++.++ +||....
T Consensus 35 KLv~~Dl~t~~li~~~~~------p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~--~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPF------PPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSG--GPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp EEEEEETTTTCEEEEEE--------CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETT--TCEEEEEETTTTEEEEEETC
T ss_pred EEEEEECCCCcEEEEEEC------ChHHcccccccceEEEEccCCCCcceEEEEeCCC--cCcEEEEEccCCcEEEEecC
Confidence 89999999998752 222 333222 1223667777654422 122222222 448999999998 7887665
Q ss_pred CCCccCCCcceEECce
Q 017140 193 GPNYYPQRESVCVDGF 208 (376)
Q Consensus 193 ~~~~~~~~~~v~~~G~ 208 (376)
.....+......++|.
T Consensus 107 ~~~~~p~~~~~~i~g~ 122 (287)
T PF03022_consen 107 SFSPDPDAGPFTIGGE 122 (287)
T ss_dssp GCTTS-SSEEEEETTE
T ss_pred CcceeccccceeccCc
Confidence 3322223334455554
No 110
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=26.48 E-value=2.4e+02 Score=21.33 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=29.5
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEEEee
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWA 169 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~~~~ 169 (376)
+++..+|.+++|. |.. .......+..|+..+.|.|...+.
T Consensus 10 ~v~~~~~~~~~W~----------~~~--~~~g~v~~~~d~~~~~y~i~~~~~ 49 (104)
T cd00837 10 QVYTADPSTGKWV----------PAS--GGTGAVSLVKDSTRNTYRIRGVDI 49 (104)
T ss_pred EEEEECCCCCceE----------ECC--CCeEEEEEEEECCCCEEEEEEEec
Confidence 7899999999999 543 112237788888888898887543
No 111
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=26.03 E-value=5.1e+02 Score=24.02 Aligned_cols=94 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred EecChhhhccCCccceEEeCCeEEEEEccCCCCCeEEEEEeccCCCCCeEEEEEEcCCCcccccccccccceeEEee--c
Q 017140 238 IEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIG--R 315 (376)
Q Consensus 238 i~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~--~ 315 (376)
+++|....+.-..+.+.-..+-+..+.. =+..++||.+++.+. ..|.... .++ .+ +-.++ .
T Consensus 20 ~ev~~pP~DsIS~l~FSP~~~~~~~A~S---WD~tVR~wevq~~g~--------~~~ka~~--~~~---~P-vL~v~Wsd 82 (347)
T KOG0647|consen 20 YEVPNPPEDSISALAFSPQADNLLAAGS---WDGTVRIWEVQNSGQ--------LVPKAQQ--SHD---GP-VLDVCWSD 82 (347)
T ss_pred eecCCCcccchheeEeccccCceEEecc---cCCceEEEEEecCCc--------ccchhhh--ccC---CC-eEEEEEcc
Q ss_pred CCeEEEeecccCCCcEEEEEeCCCCcEEEEEEeccC
Q 017140 316 NNELLLVPQTVSDSVYVIHYDVVNRSMRRAEIFGLP 351 (376)
Q Consensus 316 ~g~ill~~~~~~~~~~l~~ydl~t~~~~~v~~~~~~ 351 (376)
+|..+|. ...++.+-.+|+.+++...|..+..+
T Consensus 83 dgskVf~---g~~Dk~~k~wDL~S~Q~~~v~~Hd~p 115 (347)
T KOG0647|consen 83 DGSKVFS---GGCDKQAKLWDLASGQVSQVAAHDAP 115 (347)
T ss_pred CCceEEe---eccCCceEEEEccCCCeeeeeecccc
No 112
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=25.59 E-value=4.8e+02 Score=23.71 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=36.9
Q ss_pred eEECceEEEEEecCCCC-CCccEEEEEEcCCcceEEEecChhhhccCCccceEEeCCeEEEEEcc
Q 017140 203 VCVDGFVYFRSWVSTHK-NGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHL 266 (376)
Q Consensus 203 v~~~G~lyw~~~~~~~~-~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~ 266 (376)
-+.+|++|..+...... .| ..+..-+...+.|+.+++|..+.. ........++.|+++..+
T Consensus 197 kyY~g~LyLtTRgt~~~~~G-S~L~rs~d~G~~w~slrfp~nvHh--tnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 197 KYYDGVLYLTTRGTLPTNPG-SSLHRSDDNGQNWSSLRFPNNVHH--TNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp EEETTEEEEEEEES-TTS----EEEEESSTTSS-EEEE-TT---S--S---EEEETTEEEEEEE-
T ss_pred hhhCCEEEEEEcCcCCCCCc-ceeeeecccCCchhhccccccccc--cCCCceeeCCEEEEEecc
Confidence 37899999998654321 11 367777888899999999976652 244556678899998764
No 113
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=25.03 E-value=6.3e+02 Score=26.76 Aligned_cols=101 Identities=13% Similarity=0.253 Sum_probs=57.0
Q ss_pred EEEEEEcCCcceEE---EecChhhhccCCccceEEeCCe-EEEEEccCCCCCeEEEEEeccCC-----CCCeEEEEEEcC
Q 017140 224 VLIAFDLHEESFRV---IEIPAKALARRSESELIVYSGR-PAIADHLLLEDATMTIWVLDEND-----GDYWVQIKVFLP 294 (376)
Q Consensus 224 ~il~fD~~~~~~~~---i~lP~~~~~~~~~~~l~~~~G~-L~l~~~~~~~~~~l~IW~l~~~~-----~~~W~~~~~~lp 294 (376)
..-.|+.....|.. |..|.+... -...+.....+ -|+... .+..++||++.+++ ...|+.+.+..
T Consensus 433 KFW~~n~~~kt~~L~T~I~~PH~~~~--vat~~~~~~rs~~~vta~---~dg~~KiW~~~~~~n~~k~~s~W~c~~i~s- 506 (792)
T KOG1963|consen 433 KFWQYNPNSKTFILNTKINNPHGNAF--VATIFLNPTRSVRCVTAS---VDGDFKIWVFTDDSNIYKKSSNWTCKAIGS- 506 (792)
T ss_pred EEEEEcCCcceeEEEEEEecCCCcee--EEEEEecCcccceeEEec---cCCeEEEEEEecccccCcCccceEEeeeec-
Confidence 45566777777743 567766431 01111222222 233333 67889999997643 22799886532
Q ss_pred CCcccccccccccceeEEee--cCCeEEEeecccCCCcEEEEEeCCC-CcEEE
Q 017140 295 EDYGEEILEEDIDYFVDCIG--RNNELLLVPQTVSDSVYVIHYDVVN-RSMRR 344 (376)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~--~~g~ill~~~~~~~~~~l~~ydl~t-~~~~~ 344 (376)
|.. .+ ....+ .+|.++.+. .+..+-.||..+ ++++.
T Consensus 507 --y~k-------~~-i~a~~fs~dGslla~s----~~~~Itiwd~~~~~~l~~ 545 (792)
T KOG1963|consen 507 --YHK-------TP-ITALCFSQDGSLLAVS----FDDTITIWDYDTKNELLC 545 (792)
T ss_pred --ccc-------Cc-ccchhhcCCCcEEEEe----cCCEEEEecCCChhhhhc
Confidence 321 12 22222 688888864 567889999988 44433
No 114
>PRK00178 tolB translocation protein TolB; Provisional
Probab=24.99 E-value=6.2e+02 Score=24.30 Aligned_cols=190 Identities=10% Similarity=0.097 Sum_probs=93.6
Q ss_pred eEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEEEeecCCCCCcEEEEEeCCCceEECcCCCCcc
Q 017140 118 YATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTNSWRPLKGGPNYY 197 (376)
Q Consensus 118 ~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~~ 197 (376)
.+++.|..|++.. .+ ...... .....+.| ++++-++..... ....+++++..++..+.+......
T Consensus 224 ~l~~~~l~~g~~~------~l--~~~~g~---~~~~~~Sp-DG~~la~~~~~~--g~~~Iy~~d~~~~~~~~lt~~~~~- 288 (430)
T PRK00178 224 RIFVQNLDTGRRE------QI--TNFEGL---NGAPAWSP-DGSKLAFVLSKD--GNPEIYVMDLASRQLSRVTNHPAI- 288 (430)
T ss_pred EEEEEECCCCCEE------Ec--cCCCCC---cCCeEECC-CCCEEEEEEccC--CCceEEEEECCCCCeEEcccCCCC-
Confidence 7899999999887 66 322111 12233444 233333333222 245788889988887766432211
Q ss_pred CCCcceEECce-EEEEEecCCCCCCccEEEEEEcCCcceEEEecChhhhccCCccceEEeCCeEEEEEccCCCCCeEEEE
Q 017140 198 PQRESVCVDGF-VYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIW 276 (376)
Q Consensus 198 ~~~~~v~~~G~-lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW 276 (376)
.......-+|. +++...... ...|..+|+.+.....+....... ....+..-++.|++... ......||
T Consensus 289 ~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~~~~---~~~~~Spdg~~i~~~~~---~~~~~~l~ 358 (430)
T PRK00178 289 DTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVGNYN---ARPRLSADGKTLVMVHR---QDGNFHVA 358 (430)
T ss_pred cCCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCCCCc---cceEECCCCCEEEEEEc---cCCceEEE
Confidence 11111222554 666543321 137888899887776664322111 11122222345555544 23345677
Q ss_pred EeccCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccCCCcEEEEEeCCCCcEEEEE
Q 017140 277 VLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRAE 346 (376)
Q Consensus 277 ~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~l~~ydl~t~~~~~v~ 346 (376)
.++-. .+....+. ... .. .. + ....+|..++..........++..|+..+..+.+.
T Consensus 359 ~~dl~-tg~~~~lt----~~~----~~---~~-p-~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~ 414 (430)
T PRK00178 359 AQDLQ-RGSVRILT----DTS----LD---ES-P-SVAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLP 414 (430)
T ss_pred EEECC-CCCEEEcc----CCC----CC---CC-c-eECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 76532 33333322 110 01 11 2 12246665554332233456889999877766665
No 115
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=24.78 E-value=5.8e+02 Score=23.90 Aligned_cols=135 Identities=14% Similarity=0.172 Sum_probs=66.2
Q ss_pred cEEEEEeCCC--ceEECcCCCCccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcc--eEEEecChhhhccCCcc
Q 017140 176 EYRIFELGTN--SWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEES--FRVIEIPAKALARRSES 251 (376)
Q Consensus 176 ~~~vyss~~~--~W~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~--~~~i~lP~~~~~~~~~~ 251 (376)
.+..|+..+| .|+.--... ....++..+|.+|..... ..+.+||.++.+ |+ .+++.... .
T Consensus 76 ~v~a~d~~tG~~~W~~~~~~~---~~~~p~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~-~~~~~~~~-----~ 139 (377)
T TIGR03300 76 TVVALDAETGKRLWRVDLDER---LSGGVGADGGLVFVGTEK-------GEVIALDAEDGKELWR-AKLSSEVL-----S 139 (377)
T ss_pred eEEEEEccCCcEeeeecCCCC---cccceEEcCCEEEEEcCC-------CEEEEEECCCCcEeee-eccCceee-----c
Confidence 5666776666 687532221 122345667778865433 289999986544 43 23332221 1
Q ss_pred ceEEeCCeEEEEEccCCCCCeEEEEEeccCCCCCeEEEEEEcCCCcccccccccccceeEEeecCCeEEEeecccCCCcE
Q 017140 252 ELIVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEEILEEDIDYFVDCIGRNNELLLVPQTVSDSVY 331 (376)
Q Consensus 252 ~l~~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~ 331 (376)
.....++.+++... ...+..+-.+ .++..|.... ..+. .. ... . ..++..+|.+++. ..+..
T Consensus 140 ~p~v~~~~v~v~~~----~g~l~a~d~~-tG~~~W~~~~-~~~~-~~--~~~----~-~sp~~~~~~v~~~----~~~g~ 201 (377)
T TIGR03300 140 PPLVANGLVVVRTN----DGRLTALDAA-TGERLWTYSR-VTPA-LT--LRG----S-ASPVIADGGVLVG----FAGGK 201 (377)
T ss_pred CCEEECCEEEEECC----CCeEEEEEcC-CCceeeEEcc-CCCc-ee--ecC----C-CCCEEECCEEEEE----CCCCE
Confidence 12334566655432 3344444433 2334676542 1111 00 000 0 1112124544442 24568
Q ss_pred EEEEeCCCCcEEE
Q 017140 332 VIHYDVVNRSMRR 344 (376)
Q Consensus 332 l~~ydl~t~~~~~ 344 (376)
++.+|+++++..+
T Consensus 202 v~ald~~tG~~~W 214 (377)
T TIGR03300 202 LVALDLQTGQPLW 214 (377)
T ss_pred EEEEEccCCCEee
Confidence 9999999887654
No 116
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=24.20 E-value=7.2e+02 Score=24.72 Aligned_cols=149 Identities=17% Similarity=0.102 Sum_probs=0.0
Q ss_pred cceeeEE--EecCCeeEEEEcCCCCcee----eCCCceeecCCCCCCcccee-EEEeEeCCCCcEEEEEEeecCCCCCcE
Q 017140 105 RSVNGII--LMDFGLYATLCNPSTRQTF----NTPFVCSLTSPSVNSTYFCV-NSFGFDPVSKKYKVLNSWAIPGRDPEY 177 (376)
Q Consensus 105 ~s~~Gll--~~~~~~~~~V~NP~T~~~~----~~p~~~~L~~P~~~~~~~~~-~~l~~d~~~~~ykvv~~~~~~~~~~~~ 177 (376)
+..+|-- +...+ .++++||.|.+.. .+|+. .= +..+...... +.=-+-..++++.++..+. .+
T Consensus 274 ~nsDGkrIvFq~~G-dIylydP~td~lekldI~lpl~-rk--~k~~k~~~pskyledfa~~~Gd~ia~VSRG------ka 343 (668)
T COG4946 274 ANSDGKRIVFQNAG-DIYLYDPETDSLEKLDIGLPLD-RK--KKQPKFVNPSKYLEDFAVVNGDYIALVSRG------KA 343 (668)
T ss_pred cCCCCcEEEEecCC-cEEEeCCCcCcceeeecCCccc-cc--cccccccCHHHhhhhhccCCCcEEEEEecC------cE
Q ss_pred EEEEeCCCceEECcCCCCccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEEecChhhhccCCccceEEeC
Q 017140 178 RIFELGTNSWRPLKGGPNYYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYS 257 (376)
Q Consensus 178 ~vyss~~~~W~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~ 257 (376)
.+..+-.+-=-.++....-...+-.+--+|.++=....+ .+..||.++..-..+.-+.... ...-+.-+
T Consensus 344 Fi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD-------~l~iyd~~~~e~kr~e~~lg~I----~av~vs~d 412 (668)
T COG4946 344 FIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGD-------KLGIYDKDGGEVKRIEKDLGNI----EAVKVSPD 412 (668)
T ss_pred EEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCc-------eEEEEecCCceEEEeeCCccce----EEEEEcCC
Q ss_pred CeEEEEEccCCCCCeEEEEEec
Q 017140 258 GRPAIADHLLLEDATMTIWVLD 279 (376)
Q Consensus 258 G~L~l~~~~~~~~~~l~IW~l~ 279 (376)
|+-.+++- ..++||+.+
T Consensus 413 GK~~vvaN-----dr~el~vid 429 (668)
T COG4946 413 GKKVVVAN-----DRFELWVID 429 (668)
T ss_pred CcEEEEEc-----CceEEEEEE
No 117
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=22.78 E-value=6.5e+02 Score=23.75 Aligned_cols=175 Identities=15% Similarity=0.258 Sum_probs=86.1
Q ss_pred EEEeEeCCCCcEEEEE-EeecCCCCCcEEEEEeCCCceEECcCC--CCccCCCcce-EECceE-EEEEecCCCCCCccEE
Q 017140 151 NSFGFDPVSKKYKVLN-SWAIPGRDPEYRIFELGTNSWRPLKGG--PNYYPQRESV-CVDGFV-YFRSWVSTHKNGRTVL 225 (376)
Q Consensus 151 ~~l~~d~~~~~ykvv~-~~~~~~~~~~~~vyss~~~~W~~~~~~--~~~~~~~~~v-~~~G~l-yw~~~~~~~~~~~~~i 225 (376)
....++| ++.|.++. .. ..++.+|+..+|.=...... .+......-+ +-||++ |.++.-.. . -.+
T Consensus 148 H~a~~tP-~~~~l~v~DLG-----~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~s-t---V~v 217 (346)
T COG2706 148 HSANFTP-DGRYLVVPDLG-----TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNS-T---VDV 217 (346)
T ss_pred ceeeeCC-CCCEEEEeecC-----CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCC-E---EEE
Confidence 3444444 34555544 32 55799999998865443322 1111111222 336765 55554432 1 245
Q ss_pred EEEEcCCcceEEEe----cChhhhccCCccce-EEeCCeEEEEEccCCCCCeEEEEEeccCCCCCeEEEEEEcCCCcccc
Q 017140 226 IAFDLHEESFRVIE----IPAKALARRSESEL-IVYSGRPAIADHLLLEDATMTIWVLDENDGDYWVQIKVFLPEDYGEE 300 (376)
Q Consensus 226 l~fD~~~~~~~~i~----lP~~~~~~~~~~~l-~~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~~W~~~~~~lp~~~~~~ 300 (376)
+.+|....++..++ +|.......+...+ +.-+|+.-.++-. ..+.|.+...+..+.. =+.+. .-|.+ +
T Consensus 218 ~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR--g~dsI~~f~V~~~~g~-L~~~~-~~~te-g-- 290 (346)
T COG2706 218 LEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR--GHDSIAVFSVDPDGGK-LELVG-ITPTE-G-- 290 (346)
T ss_pred EEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC--CCCeEEEEEEcCCCCE-EEEEE-EeccC-C--
Confidence 55566668888774 56665432222222 2335554444331 3445555555544332 12221 11211 0
Q ss_pred cccccccceeEEeecCCeEEEeecccCCCcEEEEEeCCCCcEEEEEE
Q 017140 301 ILEEDIDYFVDCIGRNNELLLVPQTVSDSVYVIHYDVVNRSMRRAEI 347 (376)
Q Consensus 301 ~~~~~~~~~~~~~~~~g~ill~~~~~~~~~~l~~ydl~t~~~~~v~~ 347 (376)
... .. +. +...|++++.....+..-.+|.-|.+|+++..+..
T Consensus 291 ~~P---R~-F~-i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 291 QFP---RD-FN-INPSGRFLIAANQKSDNITVFERDKETGRLTLLGR 332 (346)
T ss_pred cCC---cc-ce-eCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccc
Confidence 000 11 21 22567777665444456678899999999998864
No 118
>PLN00181 protein SPA1-RELATED; Provisional
Probab=22.09 E-value=9.6e+02 Score=25.44 Aligned_cols=133 Identities=12% Similarity=0.121 Sum_probs=65.6
Q ss_pred cCCeeEEEEcCCCCceeeCCCceeecCCCCCCccceeEEEeEeCCCCcEEEEEEeecCCCCCcEEEEEeCCCc-eEECcC
Q 017140 114 DFGLYATLCNPSTRQTFNTPFVCSLTSPSVNSTYFCVNSFGFDPVSKKYKVLNSWAIPGRDPEYRIFELGTNS-WRPLKG 192 (376)
Q Consensus 114 ~~~~~~~V~NP~T~~~~~~p~~~~L~~P~~~~~~~~~~~l~~d~~~~~ykvv~~~~~~~~~~~~~vyss~~~~-W~~~~~ 192 (376)
.++ .+.|||..+++.. .. .......+..+.+.+..+.+-+.+. ....+.+|+..++. ...+..
T Consensus 553 ~Dg-~v~lWd~~~~~~~------~~----~~~H~~~V~~l~~~p~~~~~L~Sgs-----~Dg~v~iWd~~~~~~~~~~~~ 616 (793)
T PLN00181 553 FEG-VVQVWDVARSQLV------TE----MKEHEKRVWSIDYSSADPTLLASGS-----DDGSVKLWSINQGVSIGTIKT 616 (793)
T ss_pred CCC-eEEEEECCCCeEE------EE----ecCCCCCEEEEEEcCCCCCEEEEEc-----CCCEEEEEECCCCcEEEEEec
Confidence 455 7899998887655 22 1111123466777765555533331 14468888887652 222111
Q ss_pred CCCccCCCcceEE---CceEEEEEecCCCCCCccEEEEEEcCCcc--eEEEecChhhhccCCccceEEeCCeEEEEEccC
Q 017140 193 GPNYYPQRESVCV---DGFVYFRSWVSTHKNGRTVLIAFDLHEES--FRVIEIPAKALARRSESELIVYSGRPAIADHLL 267 (376)
Q Consensus 193 ~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~il~fD~~~~~--~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~~ 267 (376)
.. ....+.+ +|.....+..+ ..|..+|+.+.. ...+. .... ....+.-.++...+...
T Consensus 617 ~~----~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~--~h~~---~V~~v~f~~~~~lvs~s-- 679 (793)
T PLN00181 617 KA----NICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMI--GHSK---TVSYVRFVDSSTLVSSS-- 679 (793)
T ss_pred CC----CeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEec--CCCC---CEEEEEEeCCCEEEEEE--
Confidence 10 0011211 34444444333 378999987643 22222 1110 01112223555544444
Q ss_pred CCCCeEEEEEecc
Q 017140 268 LEDATMTIWVLDE 280 (376)
Q Consensus 268 ~~~~~l~IW~l~~ 280 (376)
.+..+.||.+..
T Consensus 680 -~D~~ikiWd~~~ 691 (793)
T PLN00181 680 -TDNTLKLWDLSM 691 (793)
T ss_pred -CCCEEEEEeCCC
Confidence 667899999864
No 119
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=21.96 E-value=5.1e+02 Score=22.21 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=16.8
Q ss_pred CCCcEEEEEeCCCCcEEEEE
Q 017140 327 SDSVYVIHYDVVNRSMRRAE 346 (376)
Q Consensus 327 ~~~~~l~~ydl~t~~~~~v~ 346 (376)
...+.||.||+.|++++.+.
T Consensus 137 S~GGnLy~~nl~tg~~~~ly 156 (200)
T PF15525_consen 137 SKGGNLYKYNLNTGNLTELY 156 (200)
T ss_pred ccCCeEEEEEccCCceeEee
Confidence 45778999999999998874
No 120
>PRK04043 tolB translocation protein TolB; Provisional
Probab=21.54 E-value=7.5e+02 Score=23.99 Aligned_cols=122 Identities=11% Similarity=0.089 Sum_probs=0.0
Q ss_pred Cce-EEEEEecCCCCCCccEEEEEEcCCcceEEEecChhhhccCCccceEEeCCeEEEEEccCCCCCeEEEEEeccCCCC
Q 017140 206 DGF-VYFRSWVSTHKNGRTVLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDENDGD 284 (376)
Q Consensus 206 ~G~-lyw~~~~~~~~~~~~~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW~l~~~~~~ 284 (376)
+|. +.+......... .|..+|+.+.+-+.+--..... ....+.--+.+|.+... ....-+||.+ +...+
T Consensus 198 DG~~~i~y~s~~~~~~---~Iyv~dl~tg~~~~lt~~~g~~---~~~~~SPDG~~la~~~~---~~g~~~Iy~~-dl~~g 267 (419)
T PRK04043 198 KEQTAFYYTSYGERKP---TLYKYNLYTGKKEKIASSQGML---VVSDVSKDGSKLLLTMA---PKGQPDIYLY-DTNTK 267 (419)
T ss_pred CCCcEEEEEEccCCCC---EEEEEECCCCcEEEEecCCCcE---EeeEECCCCCEEEEEEc---cCCCcEEEEE-ECCCC
Q ss_pred CeEEEEEEcCCCcccccccccccceeEEee-cCCeEEEeecccCCCcEEEEEeCCCCcEEEEEEecc
Q 017140 285 YWVQIKVFLPEDYGEEILEEDIDYFVDCIG-RNNELLLVPQTVSDSVYVIHYDVVNRSMRRAEIFGL 350 (376)
Q Consensus 285 ~W~~~~~~lp~~~~~~~~~~~~~~~~~~~~-~~g~ill~~~~~~~~~~l~~ydl~t~~~~~v~~~~~ 350 (376)
.+.++. ..+.. . ..+.. .+|+-+++.+.......|+.+|+.+++.+++-..|.
T Consensus 268 ~~~~LT-~~~~~-----------d-~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~ 321 (419)
T PRK04043 268 TLTQIT-NYPGI-----------D-VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK 321 (419)
T ss_pred cEEEcc-cCCCc-----------c-CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC
No 121
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=21.42 E-value=3.5e+02 Score=25.32 Aligned_cols=55 Identities=15% Similarity=0.078 Sum_probs=39.5
Q ss_pred CCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceEEE-ecChhhhccCCccceEEeCCeEEEEEcc
Q 017140 199 QRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFRVI-EIPAKALARRSESELIVYSGRPAIADHL 266 (376)
Q Consensus 199 ~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~~i-~lP~~~~~~~~~~~l~~~~G~L~l~~~~ 266 (376)
...+-+.+|++|.+..... .+..+|.+++++..+ .+|.... . |.-. |.+.++.+.
T Consensus 205 PhSPRWhdgrLwvldsgtG------ev~~vD~~~G~~e~Va~vpG~~r----G--L~f~-G~llvVgmS 260 (335)
T TIGR03032 205 PHSPRWYQGKLWLLNSGRG------ELGYVDPQAGKFQPVAFLPGFTR----G--LAFA-GDFAFVGLS 260 (335)
T ss_pred CcCCcEeCCeEEEEECCCC------EEEEEcCCCCcEEEEEECCCCCc----c--ccee-CCEEEEEec
Confidence 3456788999999886553 899999999999887 7776543 1 1222 777777663
No 122
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=21.13 E-value=6.7e+02 Score=24.86 Aligned_cols=80 Identities=11% Similarity=0.067 Sum_probs=46.5
Q ss_pred cEEEEEeCCC--ceEECcCCCC-------ccCCCcceEECceEEEEEecCCCCCCccEEEEEEcCCcceE-EEecChhhh
Q 017140 176 EYRIFELGTN--SWRPLKGGPN-------YYPQRESVCVDGFVYFRSWVSTHKNGRTVLIAFDLHEESFR-VIEIPAKAL 245 (376)
Q Consensus 176 ~~~vyss~~~--~W~~~~~~~~-------~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~~~~~-~i~lP~~~~ 245 (376)
.+..++..+| .|+.-..... .......+..+|.+|....+. .|.+||.++.+-. ..++|....
T Consensus 367 ~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG-------~l~ald~~tG~~lW~~~~~~~~~ 439 (488)
T cd00216 367 GLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADG-------YFRAFDATTGKELWKFRTPSGIQ 439 (488)
T ss_pred EEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCC-------eEEEEECCCCceeeEEECCCCce
Confidence 3555666666 6876433110 011223456667777765332 8999999765432 257766554
Q ss_pred ccCCccceEEeCCeEEEEEc
Q 017140 246 ARRSESELIVYSGRPAIADH 265 (376)
Q Consensus 246 ~~~~~~~l~~~~G~L~l~~~ 265 (376)
....+.+.+|++|++..
T Consensus 440 ---a~P~~~~~~g~~yv~~~ 456 (488)
T cd00216 440 ---ATPMTYEVNGKQYVGVM 456 (488)
T ss_pred ---EcCEEEEeCCEEEEEEE
Confidence 13334467999999987
No 123
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=20.08 E-value=4e+02 Score=23.83 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=48.2
Q ss_pred EEEEEEcCCcceEEEecChhhhccCCccceEEeCCeEEEEEccCCCCCeEEEEEecc-CCCCCeEEEEEEcCCCcccccc
Q 017140 224 VLIAFDLHEESFRVIEIPAKALARRSESELIVYSGRPAIADHLLLEDATMTIWVLDE-NDGDYWVQIKVFLPEDYGEEIL 302 (376)
Q Consensus 224 ~il~fD~~~~~~~~i~lP~~~~~~~~~~~l~~~~G~L~l~~~~~~~~~~l~IW~l~~-~~~~~W~~~~~~lp~~~~~~~~ 302 (376)
.-..||+.+.+++.+..+.... +.....--+|+|............+++..-.. .+...|.+..-.|. ..+ .+
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~F---CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~--~~R-WY 120 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTF---CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ--SGR-WY 120 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCc---ccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc--CCC-cc
Confidence 5678999999999888765433 22222224788877765322334455554433 22347887632232 111 11
Q ss_pred cccccceeEEee-cCCeEEEee
Q 017140 303 EEDIDYFVDCIG-RNNELLLVP 323 (376)
Q Consensus 303 ~~~~~~~~~~~~-~~g~ill~~ 323 (376)
....- .+|+++++.
T Consensus 121 -------pT~~~L~DG~vlIvG 135 (243)
T PF07250_consen 121 -------PTATTLPDGRVLIVG 135 (243)
T ss_pred -------ccceECCCCCEEEEe
Confidence 22333 689988875
Done!