Query 017141
Match_columns 376
No_of_seqs 166 out of 989
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:58:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2749 mRNA cleavage and poly 100.0 1.3E-49 2.8E-54 378.5 25.4 305 21-355 85-412 (415)
2 COG1341 Predicted GTPase or GT 100.0 4.5E-43 9.7E-48 341.9 29.3 306 14-357 45-384 (398)
3 KOG2750 Uncharacterized conser 100.0 2.6E-38 5.6E-43 315.3 15.8 341 11-365 180-547 (587)
4 COG5623 CLP1 Predicted GTPase 100.0 2.7E-32 5.9E-37 255.0 20.4 290 36-355 98-421 (424)
5 PF06807 Clp1: Pre-mRNA cleava 100.0 3.6E-32 7.9E-37 247.1 6.2 190 161-359 1-195 (195)
6 PF03205 MobB: Molybdopterin g 99.6 1.3E-15 2.8E-20 131.7 3.3 114 38-159 1-140 (140)
7 KOG1532 GTPase XAB1, interacts 99.1 2.2E-10 4.8E-15 107.3 7.2 136 35-189 17-157 (366)
8 PF03029 ATP_bind_1: Conserved 98.8 1.3E-09 2.8E-14 102.5 0.6 47 42-88 1-47 (238)
9 KOG1534 Putative transcription 98.6 5.7E-08 1.2E-12 88.1 6.9 132 38-189 4-141 (273)
10 KOG1533 Predicted GTPase [Gene 98.5 2.4E-07 5.2E-12 85.4 7.4 123 40-183 5-132 (290)
11 TIGR03018 pepcterm_TyrKin exop 98.4 9E-06 1.9E-10 74.6 14.4 66 14-79 8-79 (207)
12 TIGR01425 SRP54_euk signal rec 98.3 2.3E-06 4.9E-11 86.7 10.1 42 37-78 100-141 (429)
13 PRK13768 GTPase; Provisional 98.3 2.7E-06 5.8E-11 80.7 9.9 42 38-79 3-44 (253)
14 cd03115 SRP The signal recogni 98.3 3.9E-06 8.5E-11 74.5 9.8 40 39-78 2-41 (173)
15 TIGR00064 ftsY signal recognit 98.3 4.3E-06 9.2E-11 80.2 9.9 40 36-75 71-110 (272)
16 PRK00771 signal recognition pa 98.2 3.3E-06 7.1E-11 86.0 8.8 43 36-78 94-136 (437)
17 PRK12726 flagellar biosynthesi 98.2 1.2E-05 2.6E-10 80.1 12.1 43 36-78 205-247 (407)
18 PRK10867 signal recognition pa 98.2 6.2E-06 1.4E-10 83.8 10.3 120 37-188 100-222 (433)
19 cd02034 CooC The accessory pro 98.2 4.8E-06 1E-10 69.7 7.9 36 40-75 2-37 (116)
20 TIGR00959 ffh signal recogniti 98.1 8.9E-06 1.9E-10 82.6 9.0 120 37-188 99-221 (428)
21 PRK14974 cell division protein 98.1 1.5E-05 3.3E-10 78.6 9.1 40 37-76 140-179 (336)
22 TIGR01007 eps_fam capsular exo 98.0 5.3E-05 1.1E-09 69.0 11.8 43 37-79 17-60 (204)
23 COG0541 Ffh Signal recognition 98.0 2.2E-05 4.9E-10 78.6 9.2 122 36-189 99-222 (451)
24 PF00448 SRP54: SRP54-type pro 98.0 1.5E-05 3.3E-10 72.8 7.1 41 37-77 1-41 (196)
25 TIGR03029 EpsG chain length de 98.0 6.8E-05 1.5E-09 71.6 11.5 44 36-79 102-146 (274)
26 KOG0780 Signal recognition par 97.9 5.6E-05 1.2E-09 74.5 9.1 123 35-189 99-223 (483)
27 cd02036 MinD Bacterial cell di 97.9 2E-05 4.3E-10 69.6 5.4 40 40-79 2-42 (179)
28 TIGR01969 minD_arch cell divis 97.9 2.6E-05 5.6E-10 72.9 6.1 42 39-80 2-44 (251)
29 cd03114 ArgK-like The function 97.8 2.4E-05 5.3E-10 68.2 5.3 40 39-78 1-40 (148)
30 TIGR00176 mobB molybdopterin-g 97.8 3.1E-05 6.7E-10 68.1 5.9 45 40-84 2-46 (155)
31 PRK06731 flhF flagellar biosyn 97.8 8.4E-05 1.8E-09 71.2 9.3 42 36-77 74-115 (270)
32 COG3640 CooC CO dehydrogenase 97.8 2.7E-05 5.8E-10 72.2 5.2 49 39-90 2-51 (255)
33 PRK00889 adenylylsulfate kinas 97.8 4.2E-05 9E-10 68.0 5.9 39 36-74 3-41 (175)
34 PF01583 APS_kinase: Adenylyls 97.8 2.6E-05 5.7E-10 68.5 4.4 38 37-74 2-39 (156)
35 TIGR01968 minD_bact septum sit 97.8 4E-05 8.7E-10 71.9 6.0 43 38-80 2-45 (261)
36 PF07015 VirC1: VirC1 protein; 97.8 4.6E-05 9.9E-10 70.9 5.9 42 38-79 2-44 (231)
37 PRK10416 signal recognition pa 97.7 4.2E-05 9.2E-10 75.0 5.9 43 36-78 113-155 (318)
38 cd02042 ParA ParA and ParB of 97.7 4.8E-05 1E-09 61.5 5.1 37 40-76 2-39 (104)
39 TIGR00750 lao LAO/AO transport 97.7 8.1E-05 1.8E-09 72.3 7.6 56 21-78 20-75 (300)
40 PRK13849 putative crown gall t 97.7 5E-05 1.1E-09 71.1 5.8 41 38-78 2-43 (231)
41 PF01656 CbiA: CobQ/CobB/MinD/ 97.7 3.9E-05 8.5E-10 68.6 4.7 40 40-79 1-41 (195)
42 PRK14493 putative bifunctional 97.7 6.1E-05 1.3E-09 72.3 6.0 48 38-87 2-49 (274)
43 PRK09435 membrane ATPase/prote 97.7 0.0001 2.2E-09 72.6 7.5 45 35-79 54-98 (332)
44 cd02040 NifH NifH gene encodes 97.7 6.5E-05 1.4E-09 71.2 5.8 42 38-79 2-43 (270)
45 PRK07667 uridine kinase; Provi 97.7 0.00011 2.3E-09 66.8 7.0 51 23-75 5-55 (193)
46 CHL00175 minD septum-site dete 97.7 6.6E-05 1.4E-09 71.9 5.9 44 37-80 15-59 (281)
47 PRK10818 cell division inhibit 97.7 7.5E-05 1.6E-09 71.0 6.0 43 38-80 3-46 (270)
48 PHA02518 ParA-like protein; Pr 97.7 8.2E-05 1.8E-09 67.6 6.0 39 39-77 2-41 (211)
49 cd02019 NK Nucleoside/nucleoti 97.7 6.9E-05 1.5E-09 56.6 4.5 33 39-73 1-33 (69)
50 cd02037 MRP-like MRP (Multiple 97.7 7.3E-05 1.6E-09 66.1 5.5 40 40-79 2-42 (169)
51 smart00382 AAA ATPases associa 97.6 4.5E-05 9.8E-10 62.9 3.8 39 37-75 2-40 (148)
52 PF13207 AAA_17: AAA domain; P 97.6 7.7E-05 1.7E-09 61.8 4.8 23 39-61 1-23 (121)
53 PRK09841 cryptic autophosphory 97.6 0.00085 1.9E-08 72.9 14.0 59 21-79 511-574 (726)
54 cd03116 MobB Molybdenum is an 97.6 0.00012 2.6E-09 64.6 6.1 47 38-84 2-48 (159)
55 PRK05541 adenylylsulfate kinas 97.6 9.6E-05 2.1E-09 65.7 5.5 39 36-74 6-44 (176)
56 TIGR03499 FlhF flagellar biosy 97.6 9.8E-05 2.1E-09 71.2 5.7 42 36-77 193-236 (282)
57 PRK08118 topology modulation p 97.6 5.4E-05 1.2E-09 67.3 3.6 24 38-61 2-25 (167)
58 PRK13230 nitrogenase reductase 97.6 9.8E-05 2.1E-09 70.8 5.6 41 38-78 2-42 (279)
59 PRK13869 plasmid-partitioning 97.6 0.00015 3.1E-09 73.6 7.1 41 38-79 122-163 (405)
60 cd00009 AAA The AAA+ (ATPases 97.6 0.00015 3.2E-09 60.5 5.9 38 37-74 19-56 (151)
61 PRK13185 chlL protochlorophyll 97.6 0.00011 2.4E-09 69.9 5.8 39 38-76 3-41 (270)
62 TIGR03815 CpaE_hom_Actino heli 97.6 0.00021 4.5E-09 70.0 7.8 44 36-79 92-136 (322)
63 TIGR03371 cellulose_yhjQ cellu 97.6 0.00011 2.5E-09 68.5 5.7 39 38-76 2-41 (246)
64 cd02117 NifH_like This family 97.6 0.00013 2.8E-09 67.1 5.8 40 39-78 2-41 (212)
65 PRK11889 flhF flagellar biosyn 97.5 0.00013 2.8E-09 73.1 6.0 59 19-77 218-281 (436)
66 TIGR03453 partition_RepA plasm 97.5 0.00012 2.5E-09 73.7 5.7 42 37-79 104-146 (387)
67 PF03308 ArgK: ArgK protein; 97.5 0.00013 2.9E-09 68.8 5.6 58 20-79 14-71 (266)
68 COG0529 CysC Adenylylsulfate k 97.5 0.00016 3.4E-09 64.5 5.5 39 36-74 22-60 (197)
69 PRK14489 putative bifunctional 97.5 0.00033 7.1E-09 70.0 8.5 69 10-79 179-247 (366)
70 PRK13705 plasmid-partitioning 97.5 0.00021 4.6E-09 71.9 7.0 42 37-79 106-149 (388)
71 PRK06762 hypothetical protein; 97.5 0.00013 2.7E-09 64.2 4.4 35 37-74 2-36 (166)
72 PF13191 AAA_16: AAA ATPase do 97.5 0.00024 5.2E-09 62.8 6.1 58 19-77 7-64 (185)
73 cd02027 APSK Adenosine 5'-phos 97.5 0.00016 3.4E-09 63.0 4.8 37 39-75 1-37 (149)
74 PRK06696 uridine kinase; Valid 97.5 0.0003 6.5E-09 65.3 6.9 39 36-74 21-59 (223)
75 cd02032 Bchl_like This family 97.4 0.00021 4.6E-09 67.9 6.0 39 39-77 2-40 (267)
76 TIGR01287 nifH nitrogenase iro 97.4 0.00021 4.6E-09 68.2 5.9 41 39-79 2-42 (275)
77 PRK03846 adenylylsulfate kinas 97.4 0.00022 4.8E-09 64.9 5.5 40 36-75 23-62 (198)
78 cd01120 RecA-like_NTPases RecA 97.4 0.00021 4.6E-09 61.3 5.0 39 40-78 2-40 (165)
79 TIGR01005 eps_transp_fam exopo 97.4 0.0004 8.7E-09 75.7 8.2 44 36-79 545-589 (754)
80 COG1192 Soj ATPases involved i 97.4 0.00024 5.2E-09 67.1 5.6 42 38-79 3-46 (259)
81 cd01983 Fer4_NifH The Fer4_Nif 97.4 0.00025 5.4E-09 55.3 4.9 33 40-72 2-34 (99)
82 PRK10751 molybdopterin-guanine 97.4 0.00037 8E-09 62.4 6.5 39 37-75 6-44 (173)
83 PRK05480 uridine/cytidine kina 97.4 0.00023 5E-09 65.1 5.3 38 36-75 5-42 (209)
84 cd03111 CpaE_like This protein 97.4 0.00032 7E-09 57.4 5.6 48 40-94 2-51 (106)
85 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.00027 5.8E-09 65.1 5.6 52 20-74 24-75 (226)
86 cd02028 UMPK_like Uridine mono 97.4 0.00021 4.5E-09 64.2 4.7 36 39-74 1-36 (179)
87 PF13173 AAA_14: AAA domain 97.4 0.00024 5.1E-09 60.0 4.8 37 37-74 2-38 (128)
88 PRK13886 conjugal transfer pro 97.4 0.0003 6.4E-09 66.2 5.7 43 38-80 3-46 (241)
89 CHL00072 chlL photochlorophyll 97.4 0.0003 6.5E-09 68.1 5.8 41 39-79 2-42 (290)
90 PRK11519 tyrosine kinase; Prov 97.3 0.001 2.3E-08 72.2 10.5 59 21-79 506-569 (719)
91 cd02023 UMPK Uridine monophosp 97.3 0.00022 4.9E-09 64.6 4.5 34 40-75 2-35 (198)
92 PRK05439 pantothenate kinase; 97.3 0.00053 1.2E-08 66.9 7.3 54 21-74 70-125 (311)
93 PRK13232 nifH nitrogenase redu 97.3 0.00032 7E-09 66.9 5.7 41 39-79 3-43 (273)
94 TIGR01281 DPOR_bchL light-inde 97.3 0.00032 6.9E-09 66.6 5.6 39 39-77 2-40 (268)
95 COG0489 Mrp ATPases involved i 97.3 0.0056 1.2E-07 58.5 14.1 42 38-79 58-100 (265)
96 TIGR02237 recomb_radB DNA repa 97.3 0.00035 7.6E-09 63.8 5.7 39 36-74 11-49 (209)
97 PRK07261 topology modulation p 97.3 0.00021 4.5E-09 63.7 3.9 24 38-61 1-24 (171)
98 cd03110 Fer4_NifH_child This p 97.3 0.00026 5.7E-09 63.0 4.5 36 40-79 2-38 (179)
99 PRK14723 flhF flagellar biosyn 97.3 0.00066 1.4E-08 73.3 8.3 39 37-75 185-225 (767)
100 PF09140 MipZ: ATPase MipZ; I 97.3 0.00022 4.8E-09 67.0 4.0 41 40-80 3-44 (261)
101 TIGR00554 panK_bact pantothena 97.3 0.00055 1.2E-08 66.2 6.9 40 36-75 61-102 (290)
102 PF13671 AAA_33: AAA domain; P 97.3 0.00018 3.8E-09 61.2 3.1 32 39-75 1-32 (143)
103 PRK10037 cell division protein 97.3 0.00034 7.4E-09 65.9 5.4 38 39-76 3-41 (250)
104 PRK06217 hypothetical protein; 97.3 0.00022 4.7E-09 64.1 3.8 32 38-74 2-33 (183)
105 COG1763 MobB Molybdopterin-gua 97.3 0.00046 1E-08 61.0 5.8 49 37-85 2-50 (161)
106 PRK13235 nifH nitrogenase redu 97.3 0.00042 9.1E-09 66.2 5.9 41 39-79 3-43 (274)
107 PRK05703 flhF flagellar biosyn 97.3 0.00036 7.8E-09 71.1 5.6 58 20-77 198-263 (424)
108 PRK03839 putative kinase; Prov 97.3 0.00027 5.9E-09 63.0 3.9 31 39-74 2-32 (180)
109 PRK12724 flagellar biosynthesi 97.2 0.00039 8.4E-09 70.3 5.3 42 37-78 223-265 (432)
110 cd01394 radB RadB. The archaea 97.2 0.00048 1E-08 63.3 5.6 52 24-76 7-58 (218)
111 TIGR03574 selen_PSTK L-seryl-t 97.2 0.00036 7.8E-09 65.8 4.8 36 40-75 2-37 (249)
112 cd02033 BchX Chlorophyllide re 97.2 0.00051 1.1E-08 67.6 6.0 45 35-79 29-73 (329)
113 PRK13949 shikimate kinase; Pro 97.2 0.00027 5.8E-09 62.9 3.7 31 39-74 3-33 (169)
114 cd02025 PanK Pantothenate kina 97.2 0.00039 8.5E-09 64.6 4.8 35 40-74 2-38 (220)
115 PRK15453 phosphoribulokinase; 97.2 0.00051 1.1E-08 66.0 5.5 40 36-75 4-43 (290)
116 cd02035 ArsA ArsA ATPase funct 97.2 0.00054 1.2E-08 63.3 5.5 40 40-79 2-41 (217)
117 TIGR00455 apsK adenylylsulfate 97.2 0.00061 1.3E-08 61.1 5.7 40 36-75 17-56 (184)
118 PF00004 AAA: ATPase family as 97.2 0.00044 9.5E-09 57.5 4.5 22 40-61 1-22 (132)
119 PRK09361 radB DNA repair and r 97.2 0.00061 1.3E-08 63.0 5.8 50 24-74 11-60 (225)
120 PF00485 PRK: Phosphoribulokin 97.2 0.00039 8.6E-09 63.0 4.4 29 39-67 1-29 (194)
121 TIGR02016 BchX chlorophyllide 97.2 0.00059 1.3E-08 66.2 5.8 41 39-79 2-42 (296)
122 PRK12727 flagellar biosynthesi 97.2 0.00097 2.1E-08 69.2 7.5 60 18-77 325-392 (559)
123 PHA02519 plasmid partition pro 97.2 0.001 2.3E-08 66.9 7.6 64 15-79 82-149 (387)
124 PRK00131 aroK shikimate kinase 97.2 0.00041 9E-09 60.8 4.2 34 36-74 3-36 (175)
125 PRK08903 DnaA regulatory inact 97.2 0.00097 2.1E-08 61.7 6.9 39 37-75 42-80 (227)
126 COG4240 Predicted kinase [Gene 97.2 0.00081 1.7E-08 62.3 6.1 55 20-74 32-88 (300)
127 PRK13233 nifH nitrogenase redu 97.2 0.00064 1.4E-08 64.9 5.8 42 38-79 3-45 (275)
128 PRK06547 hypothetical protein; 97.1 0.00052 1.1E-08 61.4 4.5 26 36-61 14-39 (172)
129 PF06564 YhjQ: YhjQ protein; 97.1 0.0007 1.5E-08 63.8 5.5 41 38-78 2-43 (243)
130 PRK14530 adenylate kinase; Pro 97.1 0.0005 1.1E-08 63.3 4.5 25 37-61 3-27 (215)
131 PRK05537 bifunctional sulfate 97.1 0.00084 1.8E-08 70.9 6.7 65 10-76 367-432 (568)
132 cd02029 PRK_like Phosphoribulo 97.1 0.00071 1.5E-08 64.5 5.0 37 40-76 2-38 (277)
133 PRK08084 DNA replication initi 97.1 0.0009 1.9E-08 62.7 5.7 39 37-75 45-83 (235)
134 COG1703 ArgK Putative periplas 97.1 0.0014 3.1E-08 63.0 6.9 56 22-79 38-93 (323)
135 PRK00625 shikimate kinase; Pro 97.1 0.00052 1.1E-08 61.4 3.8 31 39-74 2-32 (173)
136 PRK08233 hypothetical protein; 97.1 0.00066 1.4E-08 60.1 4.5 36 37-74 3-38 (182)
137 PF08477 Miro: Miro-like prote 97.1 0.00052 1.1E-08 56.3 3.5 24 39-62 1-24 (119)
138 cd01124 KaiC KaiC is a circadi 97.1 0.00087 1.9E-08 59.6 5.2 38 40-77 2-39 (187)
139 PRK13234 nifH nitrogenase redu 97.0 0.0011 2.3E-08 64.4 6.0 42 38-79 5-46 (295)
140 PRK12723 flagellar biosynthesi 97.0 0.00086 1.9E-08 67.5 5.5 41 37-77 174-218 (388)
141 PRK13231 nitrogenase reductase 97.0 0.00045 9.9E-09 65.5 3.3 40 38-78 3-42 (264)
142 COG4088 Predicted nucleotide k 97.0 0.0025 5.4E-08 58.4 7.8 109 38-188 2-110 (261)
143 COG0563 Adk Adenylate kinase a 97.0 0.00055 1.2E-08 61.6 3.7 23 39-61 2-24 (178)
144 cd02021 GntK Gluconate kinase 97.0 0.00062 1.3E-08 58.7 3.8 31 40-75 2-32 (150)
145 TIGR01313 therm_gnt_kin carboh 97.0 0.00053 1.1E-08 60.1 3.3 31 40-75 1-31 (163)
146 PRK09183 transposase/IS protei 97.0 0.0014 3.1E-08 62.3 6.5 38 36-73 101-138 (259)
147 PRK08533 flagellar accessory p 97.0 0.0012 2.7E-08 61.6 5.9 41 36-76 23-63 (230)
148 PRK06995 flhF flagellar biosyn 97.0 0.001 2.2E-08 68.6 5.7 40 36-75 255-296 (484)
149 PRK05057 aroK shikimate kinase 97.0 0.00076 1.6E-08 60.1 4.2 34 37-75 4-37 (172)
150 TIGR03575 selen_PSTK_euk L-ser 97.0 0.00088 1.9E-08 66.2 4.8 37 40-76 2-39 (340)
151 cd01130 VirB11-like_ATPase Typ 97.0 0.0031 6.7E-08 56.8 7.9 50 16-71 9-58 (186)
152 PRK11670 antiporter inner memb 96.9 0.0014 3.1E-08 65.6 6.1 42 38-79 108-150 (369)
153 PF00437 T2SE: Type II/IV secr 96.9 0.0017 3.8E-08 61.7 6.5 58 16-79 111-168 (270)
154 PRK05642 DNA replication initi 96.9 0.0016 3.4E-08 61.0 6.1 37 38-74 46-82 (234)
155 PRK06067 flagellar accessory p 96.9 0.0014 3E-08 61.1 5.7 39 36-74 24-62 (234)
156 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0013 2.7E-08 62.7 5.4 39 36-74 35-73 (259)
157 COG0455 flhG Antiactivator of 96.9 0.0089 1.9E-07 57.1 11.1 43 38-80 3-47 (262)
158 PRK09270 nucleoside triphospha 96.9 0.0013 2.9E-08 61.2 5.3 39 36-74 32-71 (229)
159 PF13614 AAA_31: AAA domain; P 96.9 0.0015 3.4E-08 56.4 5.4 41 39-79 2-43 (157)
160 TIGR02782 TrbB_P P-type conjug 96.9 0.003 6.6E-08 61.4 8.0 51 37-88 132-184 (299)
161 PRK06893 DNA replication initi 96.9 0.0025 5.4E-08 59.4 7.1 38 37-74 39-76 (229)
162 cd00550 ArsA_ATPase Oxyanion-t 96.9 0.0015 3.2E-08 62.0 5.5 39 39-77 2-40 (254)
163 cd02038 FleN-like FleN is a me 96.9 0.002 4.4E-08 55.2 5.9 41 41-81 4-44 (139)
164 PRK00091 miaA tRNA delta(2)-is 96.9 0.0026 5.5E-08 62.1 7.2 84 37-136 4-90 (307)
165 PLN02748 tRNA dimethylallyltra 96.9 0.0039 8.5E-08 64.1 8.8 99 35-161 20-121 (468)
166 cd01428 ADK Adenylate kinase ( 96.9 0.00094 2E-08 59.9 3.8 31 39-74 1-31 (194)
167 PRK13947 shikimate kinase; Pro 96.9 0.001 2.2E-08 58.5 4.0 32 39-75 3-34 (171)
168 PRK13236 nitrogenase reductase 96.9 0.0017 3.8E-08 62.9 5.8 42 38-79 7-48 (296)
169 PF13238 AAA_18: AAA domain; P 96.9 0.00097 2.1E-08 55.2 3.5 22 40-61 1-22 (129)
170 PRK14494 putative molybdopteri 96.9 0.002 4.4E-08 60.2 6.0 35 38-72 2-36 (229)
171 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0022 4.8E-08 61.2 6.4 68 14-88 61-128 (264)
172 PLN02840 tRNA dimethylallyltra 96.8 0.0039 8.4E-08 63.2 8.2 100 35-161 19-120 (421)
173 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.0011 2.4E-08 59.1 3.8 30 39-73 1-30 (183)
174 cd01672 TMPK Thymidine monopho 96.8 0.0019 4E-08 57.7 5.3 34 39-72 2-35 (200)
175 PRK14722 flhF flagellar biosyn 96.8 0.0019 4.2E-08 64.6 5.8 41 36-76 136-178 (374)
176 TIGR00235 udk uridine kinase. 96.8 0.0013 2.8E-08 60.2 4.3 37 36-74 5-41 (207)
177 PF06745 KaiC: KaiC; InterPro 96.8 0.0021 4.6E-08 59.4 5.7 40 36-75 18-58 (226)
178 PF01695 IstB_IS21: IstB-like 96.8 0.0026 5.5E-08 57.2 6.0 38 36-73 46-83 (178)
179 TIGR00150 HI0065_YjeE ATPase, 96.8 0.0018 4E-08 55.4 4.8 42 18-61 5-46 (133)
180 TIGR00041 DTMP_kinase thymidyl 96.8 0.002 4.4E-08 57.9 5.4 36 37-72 3-38 (195)
181 COG1618 Predicted nucleotide k 96.8 0.0018 3.9E-08 57.1 4.7 32 37-68 5-36 (179)
182 cd01131 PilT Pilus retraction 96.8 0.0023 5.1E-08 58.3 5.7 46 39-87 3-49 (198)
183 cd00984 DnaB_C DnaB helicase C 96.8 0.0022 4.9E-08 59.7 5.7 41 36-76 12-53 (242)
184 TIGR02524 dot_icm_DotB Dot/Icm 96.8 0.0035 7.6E-08 62.5 7.4 51 6-64 111-161 (358)
185 PRK06526 transposase; Provisio 96.8 0.0015 3.1E-08 62.2 4.4 35 37-71 98-132 (254)
186 PF13479 AAA_24: AAA domain 96.8 0.0014 3E-08 60.5 4.1 33 37-77 3-35 (213)
187 TIGR01420 pilT_fam pilus retra 96.8 0.0031 6.7E-08 62.5 6.9 49 37-88 122-171 (343)
188 TIGR03881 KaiC_arch_4 KaiC dom 96.8 0.0023 5E-08 59.2 5.7 39 36-74 19-57 (229)
189 PHA00729 NTP-binding motif con 96.8 0.0016 3.4E-08 60.7 4.4 26 37-62 17-42 (226)
190 PRK13948 shikimate kinase; Pro 96.8 0.0015 3.2E-08 59.0 4.2 34 36-74 9-42 (182)
191 PTZ00301 uridine kinase; Provi 96.7 0.0022 4.8E-08 59.2 5.3 27 38-64 4-30 (210)
192 PRK14490 putative bifunctional 96.7 0.0021 4.6E-08 64.3 5.5 49 37-86 5-53 (369)
193 PRK05973 replicative DNA helic 96.7 0.0037 7.9E-08 58.8 6.8 41 36-76 63-103 (237)
194 PRK14531 adenylate kinase; Pro 96.7 0.0016 3.4E-08 58.5 4.1 24 38-61 3-26 (183)
195 PRK14532 adenylate kinase; Pro 96.7 0.0015 3.4E-08 58.5 4.0 30 39-73 2-31 (188)
196 TIGR03880 KaiC_arch_3 KaiC dom 96.7 0.0028 6.1E-08 58.6 5.8 40 36-75 15-54 (224)
197 TIGR02012 tigrfam_recA protein 96.7 0.0025 5.4E-08 62.5 5.6 39 36-74 54-92 (321)
198 PTZ00088 adenylate kinase 1; P 96.7 0.0019 4.1E-08 60.4 4.6 33 37-74 6-38 (229)
199 COG1126 GlnQ ABC-type polar am 96.7 0.0014 3E-08 60.5 3.5 37 36-73 27-63 (240)
200 TIGR03877 thermo_KaiC_1 KaiC d 96.7 0.0036 7.8E-08 58.6 6.4 50 25-75 10-59 (237)
201 TIGR02788 VirB11 P-type DNA tr 96.7 0.0046 1E-07 60.3 7.4 47 20-72 132-178 (308)
202 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0015 3.2E-08 58.2 3.7 25 37-61 3-27 (188)
203 PF08433 KTI12: Chromatin asso 96.7 0.002 4.4E-08 61.7 4.8 104 38-187 2-105 (270)
204 PF13245 AAA_19: Part of AAA d 96.7 0.0037 8.1E-08 48.2 5.4 35 37-71 10-48 (76)
205 PF13481 AAA_25: AAA domain; P 96.7 0.0027 6E-08 56.8 5.4 41 36-76 31-81 (193)
206 PRK00698 tmk thymidylate kinas 96.7 0.0026 5.7E-08 57.5 5.3 34 37-70 3-36 (205)
207 cd00464 SK Shikimate kinase (S 96.7 0.0015 3.2E-08 56.2 3.4 31 39-74 1-31 (154)
208 PF05729 NACHT: NACHT domain 96.7 0.0025 5.4E-08 54.9 4.9 28 39-66 2-29 (166)
209 PRK14527 adenylate kinase; Pro 96.7 0.0018 3.9E-08 58.4 4.1 26 36-61 5-30 (191)
210 PRK13900 type IV secretion sys 96.7 0.0039 8.5E-08 61.6 6.6 64 18-88 146-210 (332)
211 PRK03731 aroL shikimate kinase 96.7 0.002 4.3E-08 56.9 4.1 33 38-75 3-35 (171)
212 PF12846 AAA_10: AAA-like doma 96.7 0.0027 5.8E-08 60.3 5.3 37 38-74 2-38 (304)
213 PRK14730 coaE dephospho-CoA ki 96.6 0.0021 4.6E-08 58.5 4.3 38 38-80 2-39 (195)
214 PF02492 cobW: CobW/HypB/UreG, 96.6 0.0035 7.5E-08 56.1 5.4 40 38-78 1-40 (178)
215 PF13401 AAA_22: AAA domain; P 96.6 0.0023 4.9E-08 53.4 3.9 38 37-74 4-46 (131)
216 PRK08727 hypothetical protein; 96.6 0.0025 5.4E-08 59.6 4.5 37 38-74 42-78 (233)
217 PRK14495 putative molybdopteri 96.6 0.0042 9.1E-08 63.0 6.3 37 38-74 2-38 (452)
218 TIGR01351 adk adenylate kinase 96.6 0.0016 3.4E-08 59.8 3.0 23 39-61 1-23 (210)
219 PRK09825 idnK D-gluconate kina 96.6 0.0028 6.1E-08 56.8 4.6 33 37-74 3-35 (176)
220 PF07728 AAA_5: AAA domain (dy 96.6 0.0036 7.8E-08 53.1 5.0 34 40-76 2-35 (139)
221 COG0467 RAD55 RecA-superfamily 96.6 0.0036 7.8E-08 59.3 5.5 54 25-79 12-65 (260)
222 PRK06851 hypothetical protein; 96.6 0.022 4.8E-07 56.9 11.2 61 13-77 194-256 (367)
223 PRK04296 thymidine kinase; Pro 96.6 0.0042 9.1E-08 56.3 5.6 35 37-71 2-36 (190)
224 PRK13946 shikimate kinase; Pro 96.6 0.0023 4.9E-08 57.6 3.8 33 37-74 10-42 (184)
225 cd01123 Rad51_DMC1_radA Rad51_ 96.5 0.0037 8.1E-08 57.9 5.4 51 24-75 7-63 (235)
226 cd02020 CMPK Cytidine monophos 96.5 0.0022 4.8E-08 54.5 3.6 31 39-74 1-31 (147)
227 PLN02674 adenylate kinase 96.5 0.0038 8.3E-08 58.9 5.4 40 20-61 16-55 (244)
228 PRK00279 adk adenylate kinase; 96.5 0.0027 5.7E-08 58.5 4.3 30 39-73 2-31 (215)
229 PRK08181 transposase; Validate 96.5 0.0027 5.8E-08 60.8 4.4 37 37-73 106-142 (269)
230 PHA02530 pseT polynucleotide k 96.5 0.0023 4.9E-08 61.8 3.9 34 38-75 3-36 (300)
231 cd02024 NRK1 Nicotinamide ribo 96.5 0.0023 4.9E-08 58.1 3.7 23 39-61 1-23 (187)
232 cd01122 GP4d_helicase GP4d_hel 96.5 0.004 8.7E-08 59.1 5.6 58 16-76 12-70 (271)
233 PLN02796 D-glycerate 3-kinase 96.5 0.0029 6.2E-08 62.5 4.6 39 36-74 99-137 (347)
234 cd00227 CPT Chloramphenicol (C 96.5 0.0026 5.6E-08 56.6 4.0 25 37-61 2-26 (175)
235 PRK00411 cdc6 cell division co 96.5 0.0069 1.5E-07 60.6 7.5 39 36-74 54-94 (394)
236 PRK06761 hypothetical protein; 96.5 0.003 6.5E-08 60.9 4.6 40 37-76 3-43 (282)
237 TIGR02928 orc1/cdc6 family rep 96.5 0.007 1.5E-07 59.9 7.3 56 19-74 22-83 (365)
238 PF01935 DUF87: Domain of unkn 96.5 0.004 8.7E-08 57.6 5.2 44 38-84 24-68 (229)
239 PF01926 MMR_HSR1: 50S ribosom 96.5 0.0021 4.5E-08 52.9 2.9 21 39-59 1-21 (116)
240 cd01393 recA_like RecA is a b 96.5 0.006 1.3E-07 56.2 6.2 50 24-74 7-62 (226)
241 COG0703 AroK Shikimate kinase 96.4 0.0023 5E-08 57.1 3.1 32 38-74 3-34 (172)
242 TIGR00073 hypB hydrogenase acc 96.4 0.0056 1.2E-07 56.0 5.6 40 36-76 21-60 (207)
243 PRK07952 DNA replication prote 96.4 0.0039 8.5E-08 58.9 4.6 36 38-73 100-135 (244)
244 TIGR03263 guanyl_kin guanylate 96.4 0.0025 5.4E-08 56.6 3.2 25 37-61 1-25 (180)
245 PF04665 Pox_A32: Poxvirus A32 96.4 0.0043 9.3E-08 58.4 4.9 33 37-69 13-45 (241)
246 COG1100 GTPase SAR1 and relate 96.4 0.002 4.4E-08 58.7 2.6 58 38-95 6-63 (219)
247 PRK12377 putative replication 96.4 0.0044 9.4E-08 58.7 4.8 36 38-73 102-137 (248)
248 PRK00081 coaE dephospho-CoA ki 96.4 0.0031 6.8E-08 57.3 3.7 33 38-76 3-35 (194)
249 PRK04328 hypothetical protein; 96.4 0.0054 1.2E-07 58.0 5.5 40 36-75 22-61 (249)
250 cd00983 recA RecA is a bacter 96.4 0.0056 1.2E-07 60.2 5.6 39 36-74 54-92 (325)
251 TIGR02322 phosphon_PhnN phosph 96.4 0.0031 6.7E-08 56.0 3.6 24 38-61 2-25 (179)
252 cd00820 PEPCK_HprK Phosphoenol 96.4 0.0043 9.3E-08 51.1 4.0 22 37-58 15-36 (107)
253 PLN03046 D-glycerate 3-kinase; 96.4 0.0046 9.9E-08 62.5 5.0 39 36-74 211-249 (460)
254 PF10662 PduV-EutP: Ethanolami 96.4 0.0028 6.1E-08 54.9 3.1 22 38-59 2-23 (143)
255 PRK13851 type IV secretion sys 96.3 0.0037 8E-08 62.0 4.2 41 17-62 147-187 (344)
256 KOG0635 Adenosine 5'-phosphosu 96.3 0.0072 1.6E-07 52.7 5.4 39 36-74 30-68 (207)
257 PLN03025 replication factor C 96.3 0.0053 1.1E-07 60.1 5.1 29 37-65 34-62 (319)
258 PRK04182 cytidylate kinase; Pr 96.3 0.0029 6.3E-08 55.8 3.0 30 39-73 2-31 (180)
259 PRK09354 recA recombinase A; P 96.3 0.0062 1.4E-07 60.3 5.6 39 36-74 59-97 (349)
260 smart00053 DYNc Dynamin, GTPas 96.3 0.037 8E-07 52.2 10.5 25 36-60 25-49 (240)
261 PRK00440 rfc replication facto 96.3 0.0053 1.1E-07 59.4 5.0 31 37-67 38-68 (319)
262 PRK06921 hypothetical protein; 96.3 0.009 2E-07 57.1 6.5 37 37-73 117-154 (266)
263 TIGR02525 plasmid_TraJ plasmid 96.3 0.0099 2.1E-07 59.6 7.0 51 13-71 133-185 (372)
264 PRK06835 DNA replication prote 96.3 0.0043 9.3E-08 61.2 4.3 37 37-73 183-219 (329)
265 cd03112 CobW_like The function 96.3 0.0063 1.4E-07 53.4 4.9 42 38-81 1-42 (158)
266 TIGR00101 ureG urease accessor 96.3 0.0054 1.2E-07 56.0 4.7 39 38-77 2-40 (199)
267 cd02022 DPCK Dephospho-coenzym 96.3 0.0037 8E-08 55.9 3.4 32 39-76 1-32 (179)
268 COG0218 Predicted GTPase [Gene 96.3 0.043 9.4E-07 50.0 10.3 115 37-190 24-146 (200)
269 PF03266 NTPase_1: NTPase; In 96.3 0.0058 1.3E-07 54.4 4.6 29 39-67 1-29 (168)
270 COG1855 ATPase (PilT family) [ 96.2 0.0043 9.4E-08 62.7 4.1 33 39-71 265-297 (604)
271 COG4559 ABC-type hemin transpo 96.2 0.0033 7.1E-08 57.9 2.9 42 36-77 26-67 (259)
272 PRK10078 ribose 1,5-bisphospho 96.2 0.0042 9.1E-08 55.8 3.7 25 37-61 2-26 (186)
273 PRK00300 gmk guanylate kinase; 96.2 0.0041 8.9E-08 56.4 3.7 26 36-61 4-29 (205)
274 PRK13833 conjugal transfer pro 96.2 0.011 2.3E-07 58.3 6.6 36 37-72 144-181 (323)
275 PRK07933 thymidylate kinase; V 96.2 0.0068 1.5E-07 56.0 5.0 35 39-73 2-36 (213)
276 PRK06851 hypothetical protein; 96.2 0.032 7E-07 55.7 10.0 56 17-76 14-71 (367)
277 PRK14528 adenylate kinase; Pro 96.2 0.005 1.1E-07 55.5 4.0 24 38-61 2-25 (186)
278 PRK08116 hypothetical protein; 96.2 0.0068 1.5E-07 58.0 5.1 36 38-73 115-150 (268)
279 PRK02496 adk adenylate kinase; 96.2 0.0047 1E-07 55.2 3.7 24 38-61 2-25 (184)
280 COG2884 FtsE Predicted ATPase 96.2 0.0055 1.2E-07 55.5 4.0 53 22-76 15-67 (223)
281 PF00308 Bac_DnaA: Bacterial d 96.2 0.0099 2.1E-07 55.1 5.9 51 23-74 21-73 (219)
282 PF00005 ABC_tran: ABC transpo 96.2 0.0041 8.9E-08 52.5 3.1 27 36-62 10-36 (137)
283 PLN02348 phosphoribulokinase 96.2 0.0081 1.8E-07 60.3 5.5 27 36-62 48-74 (395)
284 PF02374 ArsA_ATPase: Anion-tr 96.1 0.0084 1.8E-07 58.5 5.5 41 38-78 2-42 (305)
285 PF13604 AAA_30: AAA domain; P 96.1 0.017 3.7E-07 52.6 7.2 48 20-71 5-52 (196)
286 PLN02199 shikimate kinase 96.1 0.0051 1.1E-07 59.5 3.8 33 37-74 102-134 (303)
287 PF06414 Zeta_toxin: Zeta toxi 96.1 0.0047 1E-07 56.2 3.4 38 36-75 14-51 (199)
288 PF00931 NB-ARC: NB-ARC domain 96.1 0.0078 1.7E-07 57.3 5.1 56 20-77 4-61 (287)
289 PLN02200 adenylate kinase fami 96.1 0.0054 1.2E-07 57.5 3.9 26 36-61 42-67 (234)
290 PRK13764 ATPase; Provisional 96.1 0.0076 1.6E-07 63.8 5.3 38 37-75 257-294 (602)
291 cd03292 ABC_FtsE_transporter F 96.1 0.0033 7.3E-08 57.4 2.4 26 36-61 26-51 (214)
292 cd03222 ABC_RNaseL_inhibitor T 96.1 0.0042 9E-08 55.8 2.9 34 36-69 24-57 (177)
293 PRK12402 replication factor C 96.1 0.011 2.3E-07 57.7 6.0 28 38-65 37-64 (337)
294 COG4619 ABC-type uncharacteriz 96.1 0.0054 1.2E-07 54.6 3.4 25 36-60 28-52 (223)
295 TIGR01618 phage_P_loop phage n 96.1 0.0074 1.6E-07 56.1 4.6 36 37-79 12-47 (220)
296 PF13521 AAA_28: AAA domain; P 96.1 0.0056 1.2E-07 53.6 3.6 22 39-60 1-22 (163)
297 TIGR02640 gas_vesic_GvpN gas v 96.1 0.0093 2E-07 56.8 5.3 36 37-75 21-56 (262)
298 PRK13477 bifunctional pantoate 96.1 0.0066 1.4E-07 63.2 4.5 34 36-74 283-316 (512)
299 PRK14733 coaE dephospho-CoA ki 96.0 0.0064 1.4E-07 55.9 3.9 39 37-80 6-44 (204)
300 PRK11823 DNA repair protein Ra 96.0 0.0095 2.1E-07 61.2 5.6 39 36-74 79-117 (446)
301 cd03281 ABC_MSH5_euk MutS5 hom 96.0 0.099 2.1E-06 48.2 11.8 22 38-59 30-51 (213)
302 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.0 0.0048 1.1E-07 56.6 3.0 35 36-70 29-63 (218)
303 TIGR00416 sms DNA repair prote 96.0 0.0098 2.1E-07 61.2 5.5 39 36-74 93-131 (454)
304 cd03301 ABC_MalK_N The N-termi 96.0 0.0041 8.8E-08 56.9 2.4 35 36-70 25-59 (213)
305 cd04163 Era Era subfamily. Er 96.0 0.014 3E-07 49.6 5.6 23 37-59 3-25 (168)
306 COG1120 FepC ABC-type cobalami 96.0 0.0048 1E-07 58.6 2.9 41 36-76 27-67 (258)
307 PRK12608 transcription termina 96.0 0.017 3.7E-07 57.7 6.9 43 22-67 121-163 (380)
308 cd03259 ABC_Carb_Solutes_like 96.0 0.0044 9.5E-08 56.7 2.6 35 36-70 25-59 (213)
309 cd02030 NDUO42 NADH:Ubiquinone 96.0 0.063 1.4E-06 49.6 10.3 22 40-61 2-23 (219)
310 COG1419 FlhF Flagellar GTP-bin 96.0 0.014 3E-07 58.6 6.1 58 18-75 184-243 (407)
311 PLN02924 thymidylate kinase 95.9 0.013 2.8E-07 54.5 5.6 36 36-71 15-50 (220)
312 cd04155 Arl3 Arl3 subfamily. 95.9 0.0063 1.4E-07 53.1 3.3 24 37-60 14-37 (173)
313 cd03223 ABCD_peroxisomal_ALDP 95.9 0.0059 1.3E-07 53.9 3.1 26 36-61 26-51 (166)
314 PRK05506 bifunctional sulfate 95.9 0.0092 2E-07 63.9 5.1 40 36-75 459-498 (632)
315 cd03243 ABC_MutS_homologs The 95.9 0.12 2.6E-06 47.0 11.7 23 37-59 29-51 (202)
316 PRK05800 cobU adenosylcobinami 95.9 0.0085 1.8E-07 53.4 4.1 31 38-71 2-32 (170)
317 cd03260 ABC_PstB_phosphate_tra 95.9 0.0075 1.6E-07 55.7 3.8 26 36-61 25-50 (227)
318 TIGR02173 cyt_kin_arch cytidyl 95.9 0.0067 1.4E-07 53.1 3.3 31 39-74 2-32 (171)
319 PF00910 RNA_helicase: RNA hel 95.9 0.0072 1.6E-07 49.4 3.3 26 40-65 1-26 (107)
320 cd03224 ABC_TM1139_LivF_branch 95.9 0.0046 1E-07 56.8 2.4 35 36-70 25-59 (222)
321 PRK13541 cytochrome c biogenes 95.9 0.006 1.3E-07 55.2 3.1 40 36-75 25-64 (195)
322 COG0572 Udk Uridine kinase [Nu 95.9 0.0079 1.7E-07 55.6 3.8 35 38-74 9-43 (218)
323 TIGR00960 3a0501s02 Type II (G 95.9 0.0054 1.2E-07 56.2 2.8 26 36-61 28-53 (216)
324 cd01121 Sms Sms (bacterial rad 95.9 0.013 2.7E-07 58.9 5.5 39 36-74 81-119 (372)
325 COG1124 DppF ABC-type dipeptid 95.9 0.006 1.3E-07 57.1 3.0 41 20-62 18-58 (252)
326 TIGR00152 dephospho-CoA kinase 95.9 0.0075 1.6E-07 54.2 3.6 33 39-76 1-33 (188)
327 cd00154 Rab Rab family. Rab G 95.9 0.0071 1.5E-07 51.0 3.3 22 39-60 2-23 (159)
328 cd04113 Rab4 Rab4 subfamily. 95.9 0.0071 1.5E-07 52.1 3.3 21 39-59 2-22 (161)
329 cd03230 ABC_DR_subfamily_A Thi 95.9 0.0056 1.2E-07 54.3 2.6 26 36-61 25-50 (173)
330 TIGR02673 FtsE cell division A 95.9 0.0058 1.3E-07 55.9 2.8 26 36-61 27-52 (214)
331 TIGR00362 DnaA chromosomal rep 95.9 0.015 3.2E-07 58.9 6.0 38 37-74 136-175 (405)
332 PRK09302 circadian clock prote 95.9 0.026 5.6E-07 58.9 8.0 59 16-76 12-71 (509)
333 cd03261 ABC_Org_Solvent_Resist 95.9 0.0056 1.2E-07 57.0 2.7 35 36-70 25-59 (235)
334 cd03234 ABCG_White The White s 95.9 0.0055 1.2E-07 56.7 2.6 50 21-72 19-71 (226)
335 TIGR02881 spore_V_K stage V sp 95.8 0.011 2.3E-07 56.2 4.6 27 37-63 42-68 (261)
336 PRK13695 putative NTPase; Prov 95.8 0.012 2.7E-07 52.1 4.8 30 39-68 2-31 (174)
337 cd00544 CobU Adenosylcobinamid 95.8 0.012 2.5E-07 52.5 4.5 29 40-71 2-30 (169)
338 TIGR03608 L_ocin_972_ABC putat 95.8 0.0061 1.3E-07 55.3 2.8 26 36-61 23-48 (206)
339 PRK13973 thymidylate kinase; P 95.8 0.015 3.2E-07 53.6 5.3 35 37-71 3-37 (213)
340 cd01862 Rab7 Rab7 subfamily. 95.8 0.0069 1.5E-07 52.6 3.0 22 39-60 2-23 (172)
341 cd03262 ABC_HisP_GlnQ_permease 95.8 0.0065 1.4E-07 55.4 3.0 26 36-61 25-50 (213)
342 cd03246 ABCC_Protease_Secretio 95.8 0.0087 1.9E-07 53.1 3.7 26 36-61 27-52 (173)
343 TIGR01166 cbiO cobalt transpor 95.8 0.0062 1.3E-07 54.7 2.8 26 36-61 17-42 (190)
344 PRK14491 putative bifunctional 95.8 0.017 3.7E-07 61.4 6.5 37 37-73 10-46 (597)
345 cd03244 ABCC_MRP_domain2 Domai 95.8 0.0076 1.6E-07 55.4 3.4 34 36-69 29-62 (221)
346 PRK01184 hypothetical protein; 95.8 0.0087 1.9E-07 53.4 3.6 19 38-56 2-20 (184)
347 TIGR02315 ABC_phnC phosphonate 95.8 0.007 1.5E-07 56.5 3.1 35 36-70 27-61 (243)
348 cd03225 ABC_cobalt_CbiO_domain 95.8 0.007 1.5E-07 55.2 3.0 26 36-61 26-51 (211)
349 PRK08356 hypothetical protein; 95.8 0.0079 1.7E-07 54.5 3.4 22 37-58 5-26 (195)
350 cd03226 ABC_cobalt_CbiO_domain 95.8 0.0065 1.4E-07 55.3 2.8 26 36-61 25-50 (205)
351 cd03214 ABC_Iron-Siderophores_ 95.8 0.0062 1.3E-07 54.4 2.6 26 36-61 24-49 (180)
352 TIGR02655 circ_KaiC circadian 95.8 0.013 2.8E-07 60.8 5.3 39 36-74 20-59 (484)
353 cd03265 ABC_DrrA DrrA is the A 95.8 0.0066 1.4E-07 55.9 2.8 26 36-61 25-50 (220)
354 PRK12422 chromosomal replicati 95.8 0.0096 2.1E-07 61.1 4.3 37 38-74 142-178 (445)
355 cd00157 Rho Rho (Ras homology) 95.8 0.0081 1.8E-07 52.1 3.3 23 39-61 2-24 (171)
356 cd03258 ABC_MetN_methionine_tr 95.8 0.0061 1.3E-07 56.6 2.6 35 36-70 30-64 (233)
357 cd03215 ABC_Carb_Monos_II This 95.8 0.0061 1.3E-07 54.5 2.5 35 36-70 25-59 (182)
358 cd04138 H_N_K_Ras_like H-Ras/N 95.8 0.0084 1.8E-07 51.2 3.3 22 38-59 2-23 (162)
359 TIGR03410 urea_trans_UrtE urea 95.8 0.0061 1.3E-07 56.5 2.5 35 36-70 25-59 (230)
360 cd03263 ABC_subfamily_A The AB 95.8 0.0071 1.5E-07 55.6 2.9 34 36-69 27-60 (220)
361 PRK13540 cytochrome c biogenes 95.8 0.0071 1.5E-07 54.9 2.9 26 36-61 26-51 (200)
362 smart00763 AAA_PrkA PrkA AAA d 95.8 0.013 2.8E-07 58.3 4.8 27 37-63 78-104 (361)
363 TIGR02211 LolD_lipo_ex lipopro 95.7 0.0069 1.5E-07 55.7 2.8 26 36-61 30-55 (221)
364 cd03264 ABC_drug_resistance_li 95.7 0.0064 1.4E-07 55.5 2.6 34 36-70 25-58 (211)
365 PRK08939 primosomal protein Dn 95.7 0.017 3.7E-07 56.4 5.7 37 37-73 156-192 (306)
366 cd02026 PRK Phosphoribulokinas 95.7 0.0074 1.6E-07 58.0 3.0 33 40-74 2-34 (273)
367 TIGR02655 circ_KaiC circadian 95.7 0.014 3.1E-07 60.5 5.4 39 36-74 262-300 (484)
368 PF10236 DAP3: Mitochondrial r 95.7 0.019 4.1E-07 56.1 5.9 49 24-72 10-58 (309)
369 cd03269 ABC_putative_ATPase Th 95.7 0.0094 2E-07 54.4 3.6 26 36-61 25-50 (210)
370 cd03254 ABCC_Glucan_exporter_l 95.7 0.0081 1.8E-07 55.5 3.2 26 36-61 28-53 (229)
371 PRK12339 2-phosphoglycerate ki 95.7 0.0093 2E-07 54.5 3.5 25 37-61 3-27 (197)
372 PRK04040 adenylate kinase; Pro 95.7 0.01 2.2E-07 53.8 3.7 25 37-61 2-26 (188)
373 cd03218 ABC_YhbG The ABC trans 95.7 0.0074 1.6E-07 55.9 2.9 34 36-69 25-58 (232)
374 cd03251 ABCC_MsbA MsbA is an e 95.7 0.0091 2E-07 55.4 3.5 35 36-70 27-61 (234)
375 cd03296 ABC_CysA_sulfate_impor 95.7 0.0063 1.4E-07 56.8 2.4 35 36-70 27-61 (239)
376 KOG0781 Signal recognition par 95.7 0.019 4E-07 58.5 5.8 123 35-188 376-505 (587)
377 smart00175 RAB Rab subfamily o 95.7 0.0085 1.8E-07 51.5 3.1 22 39-60 2-23 (164)
378 cd03293 ABC_NrtD_SsuB_transpor 95.7 0.0069 1.5E-07 55.7 2.6 35 36-70 29-63 (220)
379 cd03235 ABC_Metallic_Cations A 95.7 0.0068 1.5E-07 55.5 2.5 35 36-70 24-58 (213)
380 cd03257 ABC_NikE_OppD_transpor 95.7 0.0062 1.3E-07 56.1 2.3 26 36-61 30-55 (228)
381 PRK14250 phosphate ABC transpo 95.7 0.0059 1.3E-07 57.1 2.2 35 36-70 28-62 (241)
382 PRK11608 pspF phage shock prot 95.7 0.019 4E-07 56.6 5.8 58 15-74 9-66 (326)
383 TIGR02236 recomb_radA DNA repa 95.7 0.014 3E-07 56.9 4.8 39 36-74 94-138 (310)
384 CHL00181 cbbX CbbX; Provisiona 95.7 0.014 3.1E-07 56.4 4.9 29 36-64 58-86 (287)
385 cd03219 ABC_Mj1267_LivG_branch 95.7 0.0068 1.5E-07 56.3 2.6 26 36-61 25-50 (236)
386 cd03247 ABCC_cytochrome_bd The 95.7 0.009 1.9E-07 53.2 3.2 26 36-61 27-52 (178)
387 cd03228 ABCC_MRP_Like The MRP 95.7 0.0091 2E-07 52.8 3.2 26 36-61 27-52 (171)
388 PRK10463 hydrogenase nickel in 95.7 0.017 3.6E-07 55.9 5.2 42 36-78 103-144 (290)
389 KOG3347 Predicted nucleotide k 95.7 0.0091 2E-07 52.0 3.0 26 36-61 6-31 (176)
390 PRK13894 conjugal transfer ATP 95.7 0.013 2.8E-07 57.6 4.6 26 37-62 148-173 (319)
391 TIGR03015 pepcterm_ATPase puta 95.7 0.015 3.2E-07 54.9 4.9 45 17-62 24-68 (269)
392 PRK05201 hslU ATP-dependent pr 95.7 0.011 2.4E-07 59.9 4.1 44 37-87 50-93 (443)
393 PRK11629 lolD lipoprotein tran 95.7 0.0066 1.4E-07 56.4 2.4 26 36-61 34-59 (233)
394 cd03256 ABC_PhnC_transporter A 95.7 0.0078 1.7E-07 56.0 2.9 35 36-70 26-60 (241)
395 cd01860 Rab5_related Rab5-rela 95.7 0.0092 2E-07 51.3 3.2 22 39-60 3-24 (163)
396 PRK10247 putative ABC transpor 95.7 0.0097 2.1E-07 55.1 3.5 26 36-61 32-57 (225)
397 PF00735 Septin: Septin; Inte 95.7 0.0078 1.7E-07 58.1 2.9 26 38-63 5-30 (281)
398 COG1149 MinD superfamily P-loo 95.7 0.016 3.5E-07 55.1 4.9 41 39-80 3-44 (284)
399 COG1072 CoaA Panthothenate kin 95.7 0.018 3.8E-07 55.0 5.2 33 35-67 80-112 (283)
400 TIGR01650 PD_CobS cobaltochela 95.7 0.025 5.5E-07 55.5 6.5 60 19-87 52-111 (327)
401 cd03238 ABC_UvrA The excision 95.7 0.011 2.4E-07 53.0 3.7 23 36-58 20-42 (176)
402 PRK14731 coaE dephospho-CoA ki 95.7 0.012 2.7E-07 53.9 4.1 32 37-74 5-36 (208)
403 COG2805 PilT Tfp pilus assembl 95.6 0.03 6.6E-07 54.1 6.7 55 5-67 101-155 (353)
404 cd03216 ABC_Carb_Monos_I This 95.6 0.007 1.5E-07 53.3 2.3 26 36-61 25-50 (163)
405 cd03298 ABC_ThiQ_thiamine_tran 95.6 0.0079 1.7E-07 54.9 2.7 26 36-61 23-48 (211)
406 PRK04220 2-phosphoglycerate ki 95.6 0.014 2.9E-07 56.8 4.4 38 36-77 91-128 (301)
407 PRK14721 flhF flagellar biosyn 95.6 0.02 4.3E-07 58.2 5.8 40 36-75 190-231 (420)
408 cd00876 Ras Ras family. The R 95.6 0.0086 1.9E-07 51.0 2.8 21 39-59 1-21 (160)
409 PRK11701 phnK phosphonate C-P 95.6 0.0085 1.8E-07 56.6 3.0 35 36-70 31-65 (258)
410 PRK13538 cytochrome c biogenes 95.6 0.0083 1.8E-07 54.6 2.8 35 36-70 26-60 (204)
411 TIGR03864 PQQ_ABC_ATP ABC tran 95.6 0.0074 1.6E-07 56.2 2.5 35 36-70 26-60 (236)
412 PLN02165 adenylate isopentenyl 95.6 0.013 2.7E-07 57.8 4.2 36 36-76 42-77 (334)
413 PRK08154 anaerobic benzoate ca 95.6 0.0097 2.1E-07 58.1 3.4 35 35-74 131-165 (309)
414 TIGR01184 ntrCD nitrate transp 95.6 0.0084 1.8E-07 55.8 2.8 35 36-70 10-44 (230)
415 PRK10895 lipopolysaccharide AB 95.6 0.0087 1.9E-07 55.9 2.9 35 36-70 28-62 (241)
416 PRK11248 tauB taurine transpor 95.6 0.0086 1.9E-07 56.7 2.9 35 36-70 26-60 (255)
417 cd03253 ABCC_ATM1_transporter 95.6 0.01 2.2E-07 55.1 3.4 35 36-70 26-60 (236)
418 cd03245 ABCC_bacteriocin_expor 95.6 0.01 2.2E-07 54.5 3.3 26 36-61 29-54 (220)
419 cd03369 ABCC_NFT1 Domain 2 of 95.6 0.011 2.4E-07 53.8 3.5 26 36-61 33-58 (207)
420 PF00071 Ras: Ras family; Int 95.6 0.011 2.4E-07 50.8 3.4 22 39-60 1-22 (162)
421 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.6 0.01 2.2E-07 55.2 3.3 35 36-70 28-62 (238)
422 cd03295 ABC_OpuCA_Osmoprotecti 95.6 0.0094 2E-07 55.7 3.1 26 36-61 26-51 (242)
423 PF03193 DUF258: Protein of un 95.6 0.019 4E-07 50.9 4.7 25 37-61 35-59 (161)
424 PF01637 Arch_ATPase: Archaeal 95.6 0.0031 6.6E-08 57.4 -0.3 37 37-73 20-56 (234)
425 smart00173 RAS Ras subfamily o 95.6 0.011 2.5E-07 50.9 3.3 22 39-60 2-23 (164)
426 TIGR02533 type_II_gspE general 95.5 0.02 4.4E-07 59.4 5.7 67 13-86 222-288 (486)
427 PRK11545 gntK gluconate kinase 95.5 0.01 2.2E-07 52.4 3.0 29 43-76 1-29 (163)
428 cd03252 ABCC_Hemolysin The ABC 95.5 0.011 2.3E-07 55.1 3.3 35 36-70 27-61 (237)
429 PF07724 AAA_2: AAA domain (Cd 95.5 0.017 3.6E-07 51.6 4.4 37 38-74 4-41 (171)
430 PRK11264 putative amino-acid A 95.5 0.0093 2E-07 55.9 2.9 26 36-61 28-53 (250)
431 cd03229 ABC_Class3 This class 95.5 0.0094 2E-07 53.1 2.8 26 36-61 25-50 (178)
432 cd03268 ABC_BcrA_bacitracin_re 95.5 0.0098 2.1E-07 54.2 3.0 35 36-70 25-59 (208)
433 TIGR01277 thiQ thiamine ABC tr 95.5 0.0094 2E-07 54.6 2.8 35 36-70 23-57 (213)
434 cd01853 Toc34_like Toc34-like 95.5 0.2 4.3E-06 47.5 11.9 43 18-60 11-54 (249)
435 PRK10584 putative ABC transpor 95.5 0.0099 2.1E-07 54.9 3.0 26 36-61 35-60 (228)
436 PRK11247 ssuB aliphatic sulfon 95.5 0.0094 2E-07 56.6 2.8 34 36-69 37-70 (257)
437 PRK12338 hypothetical protein; 95.5 0.015 3.2E-07 57.0 4.3 25 37-61 4-28 (319)
438 PF01580 FtsK_SpoIIIE: FtsK/Sp 95.5 0.02 4.4E-07 52.0 4.9 82 38-142 39-122 (205)
439 TIGR02323 CP_lyasePhnK phospho 95.5 0.009 2E-07 56.2 2.7 26 36-61 28-53 (253)
440 PRK14734 coaE dephospho-CoA ki 95.5 0.014 3E-07 53.4 3.9 31 39-75 3-33 (200)
441 PRK04301 radA DNA repair and r 95.5 0.017 3.8E-07 56.5 4.8 39 36-74 101-145 (317)
442 TIGR01189 ccmA heme ABC export 95.5 0.0096 2.1E-07 53.9 2.7 26 36-61 25-50 (198)
443 PRK10771 thiQ thiamine transpo 95.5 0.0099 2.2E-07 55.2 2.9 35 36-70 24-58 (232)
444 cd04119 RJL RJL (RabJ-Like) su 95.5 0.012 2.7E-07 50.5 3.3 21 39-59 2-22 (168)
445 PRK15177 Vi polysaccharide exp 95.5 0.013 2.8E-07 53.9 3.6 34 36-69 12-45 (213)
446 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.5 0.014 2.9E-07 50.4 3.5 26 36-61 25-50 (144)
447 PRK14737 gmk guanylate kinase; 95.5 0.014 3E-07 52.8 3.6 25 36-60 3-27 (186)
448 TIGR03771 anch_rpt_ABC anchore 95.5 0.011 2.3E-07 54.8 3.0 26 36-61 5-30 (223)
449 TIGR01978 sufC FeS assembly AT 95.5 0.013 2.8E-07 54.6 3.6 25 36-60 25-49 (243)
450 PF01121 CoaE: Dephospho-CoA k 95.5 0.011 2.4E-07 53.3 2.9 40 39-84 2-41 (180)
451 TIGR02324 CP_lyasePhnL phospho 95.5 0.011 2.4E-07 54.5 3.0 34 36-69 33-66 (224)
452 cd03232 ABC_PDR_domain2 The pl 95.5 0.013 2.8E-07 52.9 3.4 25 36-60 32-56 (192)
453 PRK13975 thymidylate kinase; P 95.4 0.015 3.2E-07 52.3 3.8 24 38-61 3-26 (196)
454 cd01878 HflX HflX subfamily. 95.4 0.017 3.7E-07 52.2 4.2 24 37-60 41-64 (204)
455 cd03250 ABCC_MRP_domain1 Domai 95.4 0.012 2.7E-07 53.4 3.3 26 36-61 30-55 (204)
456 PRK10908 cell division protein 95.4 0.014 3E-07 53.8 3.7 26 36-61 27-52 (222)
457 cd00879 Sar1 Sar1 subfamily. 95.4 0.02 4.4E-07 50.9 4.6 35 22-59 7-41 (190)
458 PRK14732 coaE dephospho-CoA ki 95.4 0.013 2.9E-07 53.4 3.4 39 40-84 2-40 (196)
459 cd03237 ABC_RNaseL_inhibitor_d 95.4 0.011 2.4E-07 55.7 3.0 26 36-61 24-49 (246)
460 PRK11124 artP arginine transpo 95.4 0.01 2.2E-07 55.4 2.7 26 36-61 27-52 (242)
461 cd00071 GMPK Guanosine monopho 95.4 0.012 2.7E-07 50.3 3.0 22 40-61 2-23 (137)
462 cd03248 ABCC_TAP TAP, the Tran 95.4 0.013 2.8E-07 54.1 3.4 26 36-61 39-64 (226)
463 PRK14526 adenylate kinase; Pro 95.4 0.015 3.2E-07 53.7 3.7 23 39-61 2-24 (211)
464 PRK10646 ADP-binding protein; 95.4 0.023 4.9E-07 49.9 4.6 43 17-61 10-52 (153)
465 COG1116 TauB ABC-type nitrate/ 95.4 0.015 3.2E-07 54.7 3.7 27 36-62 28-54 (248)
466 COG0237 CoaE Dephospho-CoA kin 95.4 0.015 3.3E-07 53.3 3.7 46 38-89 3-48 (201)
467 PTZ00451 dephospho-CoA kinase; 95.4 0.016 3.4E-07 54.8 3.9 42 39-85 3-44 (244)
468 PRK13539 cytochrome c biogenes 95.4 0.012 2.5E-07 53.8 2.9 26 36-61 27-52 (207)
469 PRK07429 phosphoribulokinase; 95.4 0.019 4.1E-07 56.6 4.6 26 36-61 7-32 (327)
470 PLN02318 phosphoribulokinase/u 95.4 0.02 4.4E-07 60.3 4.9 25 37-61 65-89 (656)
471 cd03266 ABC_NatA_sodium_export 95.4 0.011 2.4E-07 54.2 2.7 35 36-70 30-64 (218)
472 cd01866 Rab2 Rab2 subfamily. 95.4 0.013 2.9E-07 51.1 3.1 22 38-59 5-26 (168)
473 COG1484 DnaC DNA replication p 95.4 0.025 5.4E-07 53.8 5.2 36 37-72 105-140 (254)
474 PRK13646 cbiO cobalt transport 95.4 0.011 2.4E-07 56.9 2.9 35 36-70 32-66 (286)
475 CHL00081 chlI Mg-protoporyphyr 95.3 0.025 5.5E-07 56.2 5.4 60 20-81 21-83 (350)
476 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.3 0.011 2.4E-07 54.8 2.6 26 36-61 47-72 (224)
477 cd00267 ABC_ATPase ABC (ATP-bi 95.3 0.013 2.8E-07 51.0 2.9 26 36-61 24-49 (157)
478 COG1136 SalX ABC-type antimicr 95.3 0.013 2.9E-07 54.6 3.1 39 36-74 30-68 (226)
479 PRK10575 iron-hydroxamate tran 95.3 0.0084 1.8E-07 57.0 1.9 35 36-70 36-70 (265)
480 cd01867 Rab8_Rab10_Rab13_like 95.3 0.015 3.2E-07 50.7 3.3 22 38-59 4-25 (167)
481 TIGR03005 ectoine_ehuA ectoine 95.3 0.011 2.5E-07 55.5 2.7 34 36-69 25-58 (252)
482 TIGR02880 cbbX_cfxQ probable R 95.3 0.023 5E-07 54.8 4.9 29 37-65 58-86 (284)
483 PRK13645 cbiO cobalt transport 95.3 0.012 2.6E-07 56.7 2.9 35 36-70 36-70 (289)
484 PRK14242 phosphate transporter 95.3 0.015 3.3E-07 54.6 3.6 25 36-60 31-55 (253)
485 cd01128 rho_factor Transcripti 95.3 0.018 4E-07 54.5 4.1 29 36-64 15-43 (249)
486 KOG3022 Predicted ATPase, nucl 95.3 0.027 5.9E-07 53.7 5.2 41 39-79 49-90 (300)
487 cd01863 Rab18 Rab18 subfamily. 95.3 0.014 3.1E-07 50.1 3.1 21 39-59 2-22 (161)
488 TIGR01288 nodI ATP-binding ABC 95.3 0.01 2.2E-07 57.7 2.4 40 36-75 29-68 (303)
489 PRK09112 DNA polymerase III su 95.3 0.2 4.2E-06 50.0 11.5 56 6-63 7-71 (351)
490 COG0003 ArsA Predicted ATPase 95.3 0.028 6.1E-07 55.2 5.5 42 38-79 3-44 (322)
491 PRK13631 cbiO cobalt transport 95.3 0.011 2.4E-07 58.0 2.6 42 36-77 51-92 (320)
492 COG1122 CbiO ABC-type cobalt t 95.3 0.012 2.7E-07 55.2 2.9 41 36-76 29-69 (235)
493 PF00158 Sigma54_activat: Sigm 95.3 0.027 5.8E-07 50.1 4.9 52 20-73 7-58 (168)
494 COG4987 CydC ABC-type transpor 95.3 0.015 3.2E-07 60.1 3.6 37 36-84 363-399 (573)
495 TIGR02769 nickel_nikE nickel i 95.3 0.012 2.6E-07 55.9 2.8 26 36-61 36-61 (265)
496 PRK13632 cbiO cobalt transport 95.3 0.012 2.7E-07 56.1 2.8 35 36-70 34-68 (271)
497 COG1134 TagH ABC-type polysacc 95.3 0.017 3.6E-07 54.2 3.6 26 36-61 52-77 (249)
498 PRK00149 dnaA chromosomal repl 95.3 0.021 4.6E-07 58.6 4.8 37 38-74 149-187 (450)
499 PRK11300 livG leucine/isoleuci 95.3 0.011 2.4E-07 55.6 2.5 35 36-70 30-64 (255)
500 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 95.3 0.015 3.2E-07 50.5 3.1 22 38-59 3-24 (166)
No 1
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=100.00 E-value=1.3e-49 Score=378.45 Aligned_cols=305 Identities=21% Similarity=0.343 Sum_probs=242.6
Q ss_pred HHHHHHHhhcc--CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCC
Q 017141 21 WSDAADSIAYD--SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDL 98 (376)
Q Consensus 21 W~~~~~~i~~~--~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~ 98 (376)
-+.+++.+... ...+.|||+||+||.++||||+||+|+||+++.|++|.|+|+||||+.++.||+||+..++.+.+..
T Consensus 85 lH~ale~~R~~~e~~~~~GPrv~vVGp~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sitiPGsiaA~~i~~~~D~~ 164 (415)
T KOG2749|consen 85 LHAALEKRRMQAEEESSYGPRVMVVGPTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSITIPGSIAAIPIEMPLDVI 164 (415)
T ss_pred HHHHHHHHhhhhhhhhccCCEEEEECCCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCceecccchhheecccccchh
Confidence 34555544321 1223599999999999999999999999999999999999999999999999999999999975422
Q ss_pred CCCCCCCCceeEEcCCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccccHHHHHHHHHHh
Q 017141 99 TIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYI 178 (376)
Q Consensus 99 ~~~~~~~p~~~~f~G~~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~G~~ll~~~i~~~ 178 (376)
....+.+| +.|+||+++|..|+++|..++.+|++.+.+++. .+++.+.+++|||||||++|.|++.|.++|++|
T Consensus 165 eGf~l~~p-LV~~FG~~sp~~N~~LY~~~~s~La~v~~~~~~-----~n~~ar~sG~iInT~g~i~~egy~~llhai~~f 238 (415)
T KOG2749|consen 165 EGFSLTAP-LVYNFGLTSPSTNLELYKALVSELAEVLKQRLS-----LNPEARVSGCIINTCGWIEGEGYAALLHAIKAF 238 (415)
T ss_pred hCcccCCc-eeeeccCCCCCcCHHHHHHHHHHHHHHHHHHhc-----cCchhcccceEEeccceeccccHHHHHHHHHHc
Confidence 21224566 689999999999999999999999999999874 355678999999999999999999999999999
Q ss_pred CCCEEEEEecCcccccCCCCcccccCCCCcceEEEEecCCCCCCCcccccchHHHHHHHHHHHHHHhhhcCCCCCchhhh
Q 017141 179 TPTHVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDLNITII 258 (376)
Q Consensus 179 ~p~~Vv~l~~~~~~~~l~~~~~~~~~~~~~~v~vv~l~~~~~~~~~rs~~~~~~~~~~R~~~~~~YF~~~~~~~~~~~~~ 258 (376)
+.|.||+++++.....+.+. -..+..++++.+|+++++ .+|+ ..-++..|..++++||||....++.+
T Consensus 239 ~v~vviVLg~ErLy~~lkk~-----~~~~~~v~vv~lpKsgGv-~~Rs---~~~r~~~r~~~I~eYFYG~~~~~lsP--- 306 (415)
T KOG2749|consen 239 EVDVVIVLGQERLYSSLKKD-----LPPKKNVRVVKLPKSGGV-VARS---KEVRRKLRGRSIREYFYGSVRNELSP--- 306 (415)
T ss_pred CccEEEEeccHHHHHHHHhh-----ccccccceEEEecCCCCe-Eeeh---HHHHHHHhhhhHHHhcccccCCcccc---
Confidence 99999999987544433321 112356789999999984 5666 34578899999999999966554432
Q ss_pred HHhhhhhcCCCCeeeecCceEEEEeecCC-Cch------------------hHHHHhhccEEEEEEcCCCCCCC--CceE
Q 017141 259 KELAQALAAYPPYQVPISSIKIRHLYCQV-PRS------------------EIFYSLNATIVGLAISSDASENL--PHCV 317 (376)
Q Consensus 259 ~~~~~~L~~~~P~~v~~~~l~i~~~~~~v-~~~------------------~i~~~lngslVaL~~~~~~~~~~--~~~l 317 (376)
..+.|.|+++++++++.+. |.+ .+-..|...+.|+..+.+..+++ ++++
T Consensus 307 ----------~t~~Vkf~Dl~v~riga~~~p~S~lp~g~~~e~~~~k~~~vt~~~~l~h~vLAiS~A~~~ed~Vi~S~V~ 376 (415)
T KOG2749|consen 307 ----------FTFNVKFSDLTVYRIGAPQAPDSCLPLGMTRENNQLKLVPVTITERLQHHVLAISFAEEPEDNVIKSPVA 376 (415)
T ss_pred ----------eeEeeecceEEEEEecCCCCCccccccccccccCceEEEecccCHHHheeeEEEEecccchhhhhcCcce
Confidence 1267999999999987332 111 13345667788887665444433 4889
Q ss_pred EEEEEeeeecCCCEEEEEcCCCCCCCCcccEEEecccc
Q 017141 318 GLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQ 355 (376)
Q Consensus 318 GlgiVr~ID~~~~~i~iltP~~~~~l~~v~~Lv~G~i~ 355 (376)
||.+|..||.++++|++|+|+|+.+|++ .|+.|.+.
T Consensus 377 Gfv~VteVd~~~~kit~lsP~p~~LPsk--~Li~g~l~ 412 (415)
T KOG2749|consen 377 GFVLVTEVDLEKRKITVLSPVPRTLPSK--ALILGDLK 412 (415)
T ss_pred eEEEEEeccchheeEEEecCCCCCCCcc--eEEeeeee
Confidence 9999999999999999999999999998 88888765
No 2
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=100.00 E-value=4.5e-43 Score=341.90 Aligned_cols=306 Identities=26% Similarity=0.408 Sum_probs=221.9
Q ss_pred CccCChhHHHHHHHhhcc--C---CCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEE
Q 017141 14 AIYIPREWSDAADSIAYD--S---NTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSL 88 (376)
Q Consensus 14 ~~~ip~~W~~~~~~i~~~--~---~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl 88 (376)
...+|++|.+.++.|... + .....+++||+|++|||||||+++|+|+++.+|++++++|+|+||++++|||+|||
T Consensus 45 ~ve~P~d~~~~~e~i~~~~~~~~~~~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL 124 (398)
T COG1341 45 LVEVPEDRSEPLEEIADTWESKSESAGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISL 124 (398)
T ss_pred cccCchHhhhHHHHHhhcccccchhccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEe
Confidence 678899999999998741 1 12347899999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCCCCCCCCCCceeEEcCCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCcccc-cc
Q 017141 89 TVVDTLTPDLTIPCLKTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKG-IG 167 (376)
Q Consensus 89 ~~i~~~~~~~~~~~~~~p~~~~f~G~~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g-~G 167 (376)
..++++..++.. ..|...||+|++||++++.+|+.++.+|++.+++. ..-+||||+|||+| .|
T Consensus 125 ~~~~s~~~~L~~---l~~~~~~FvG~isP~~~~~~~i~~v~rL~~~a~~~-------------~~~ilIdT~GWi~G~~g 188 (398)
T COG1341 125 AFPESPVISLSE---LEPFTLYFVGSISPQGFPGRYIAGVARLVDLAKKE-------------ADFILIDTDGWIKGWGG 188 (398)
T ss_pred ecccCCCCCHHH---cCccceEEEeccCCCCChHHHHHHHHHHHHHhhcc-------------CCEEEEcCCCceeCchH
Confidence 999997654332 23456799999999999999999999999987653 23469999999999 89
Q ss_pred HHHHHHHHHHhCCCEEEEEecCcccccCCCCcccccCCCCcceEEEEecCCCCCCCcccccchHHHHHHHHHHHHHHhhh
Q 017141 168 YDILVDMLKYITPTHVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQ 247 (376)
Q Consensus 168 ~~ll~~~i~~~~p~~Vv~l~~~~~~~~l~~~~~~~~~~~~~~v~vv~l~~~~~~~~~rs~~~~~~~~~~R~~~~~~YF~~ 247 (376)
++++.++++.++||+|++++.+++...+.+. ++ ....++.+... ..++ +.+|+++|.+++..||++
T Consensus 189 ~elk~~li~~ikP~~Ii~l~~~~~~~~l~~~-~~-------~~~~~~~~~~~---~~~s---R~ER~~~R~e~~~ryf~~ 254 (398)
T COG1341 189 LELKRALIDAIKPDLIIALERANELSPLLEG-VE-------SIVYLKVPDAV---APRS---REERKELREEKYRRYFEG 254 (398)
T ss_pred HHHHHHHHhhcCCCEEEEeccccccchhhhc-cc-------CceEEeccccc---cccC---hhHHHHHHHHHHHHhccC
Confidence 9999999999999999999987765544431 11 11123344332 2333 678999999999999998
Q ss_pred cCCCCCc----------hh---hh----HHhhhhhcCC---CCeeeecCceEEEEeecC----CCchh----HHHHhhcc
Q 017141 248 CFPSDLN----------IT---II----KELAQALAAY---PPYQVPISSIKIRHLYCQ----VPRSE----IFYSLNAT 299 (376)
Q Consensus 248 ~~~~~~~----------~~---~~----~~~~~~L~~~---~P~~v~~~~l~i~~~~~~----v~~~~----i~~~lngs 299 (376)
.....+. ++ .. +......... +-+.+++.-+.+....+. +..++ -...+.|.
T Consensus 255 ~~~~~v~~~~~~i~g~~if~~~~i~~~~~~~l~~~i~~~~l~~~~~~~~~~~V~~d~~~~~r~~~~~~~~~v~~~~l~gl 334 (398)
T COG1341 255 SKIRTVDLDDVRIQGTPIFQGEPIDDEEEKLLEKLIKKGILHAEKCGGRPYVVKSDLEEGPRLVSGNDVRVVPSEELKGL 334 (398)
T ss_pred CceEEecchhceeecccccCCCccchhHHHhhhhhhhhccccceecCCceEEEeecccccceeecCCcEEEEChhHhccc
Confidence 3211110 00 00 0111111100 111122211111111110 11111 13458899
Q ss_pred EEEEEEcCCCCCCCCceEEEEEEeeeecCCCEEEEEcCCCCCCCCcccEEEeccccCC
Q 017141 300 IVGLAISSDASENLPHCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIP 357 (376)
Q Consensus 300 lVaL~~~~~~~~~~~~~lGlgiVr~ID~~~~~i~iltP~~~~~l~~v~~Lv~G~i~lP 357 (376)
+|||+..+ ..|+|+|+|+.||.++++++|+||+ +...++..+++|++++.
T Consensus 335 l~gl~d~~------~~~iGlGvl~~Id~~~~~~~i~t~~--~~~~~i~~i~~Gr~rld 384 (398)
T COG1341 335 LVGLIDND------GFCIGLGVLRRIDFKENELTIYTRV--DDIGEIREIRLGRIRLD 384 (398)
T ss_pred eEEEecCC------CcEEEEEEEEEeeccCceEEEEecc--cccCceEEEEEEEEEec
Confidence 99998552 4899999999999999999999998 56678899999999887
No 3
>KOG2750 consensus Uncharacterized conserved protein similar to ATP/GTP-binding protein [General function prediction only]
Probab=100.00 E-value=2.6e-38 Score=315.26 Aligned_cols=341 Identities=31% Similarity=0.530 Sum_probs=230.3
Q ss_pred CCCCccCChhHHHHHHHhhc-cCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEcCCCCCCCCCCCceEEE
Q 017141 11 PSPAIYIPREWSDAADSIAY-DSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTDVGQPEFTAPGFLSL 88 (376)
Q Consensus 11 ~~~~~~ip~~W~~~~~~i~~-~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~lDlD~GQ~~~~~PG~vSl 88 (376)
..-++.+++-|+.-+..+-. .......||+|++|+|||||||++|.++|+.+ ..+..|+++|+|+||++++|+||+|+
T Consensus 180 ~~~si~~e~~~s~s~~~~~~~~k~d~~~p~im~~g~kgsgKSt~~r~~i~~~l~~~y~~v~~l~~d~gq~e~sp~g~is~ 259 (587)
T KOG2750|consen 180 SIFSISVEEYLSTSLEKLVLSLKNDYYQPRIMVIGGKGSGKSTFVRKLINEFLQDIYDHVFSLDCDEGQPEYSPPGCISL 259 (587)
T ss_pred cccccchhhhhcchhHHhhhhccccccCceeEEeccCCcccchHHHHHHHHHHHhhheEEEEEeccCCCceecCcccccc
Confidence 33455566666455544421 11223468999999999999999999999955 55677999999999999999999999
Q ss_pred EecccCCCCCCCCCCCC-CceeEEcCCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCcccccc
Q 017141 89 TVVDTLTPDLTIPCLKT-PKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIG 167 (376)
Q Consensus 89 ~~i~~~~~~~~~~~~~~-p~~~~f~G~~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~G 167 (376)
+.+.+|+.+-.+.+... -.+.+|.|. +.|.+++..++++|+....+.++. .....++|||+|||++|.|
T Consensus 260 ~~lssPi~~~v~~~ql~~~~l~~~~~s-------d~~~~~v~~l~~~~~~~f~~se~~---~~~~~~~IIn~pGwi~g~g 329 (587)
T KOG2750|consen 260 TKLSSPIDLKVHLCQLSNTLLQFYAGS-------DHYQREVTSLFNCYQRLFDHSEEQ---PKFFGPLIINLPGWIKGFG 329 (587)
T ss_pred ccccCccccchhhhhhchhhhhhhccc-------hhhhhhhhhHHHHHHHhccchhhc---ccccCceEEecCCcccccc
Confidence 99999976543333222 245678883 667777777777777665433222 1346789999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEecCcccccCCCC----cccccCCCCcceEEEEecCCCCCCCcccccchHHHHHHHHHHHHH
Q 017141 168 YDILVDMLKYITPTHVVKINISFEKKNLPAG----AFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMA 243 (376)
Q Consensus 168 ~~ll~~~i~~~~p~~Vv~l~~~~~~~~l~~~----~~~~~~~~~~~v~vv~l~~~~~~~~~rs~~~~~~~~~~R~~~~~~ 243 (376)
.+|+..+++..+|+|+|.+..+....+++.. .+|..........+++.+... .+-....+.+++.+|++.+.+
T Consensus 330 aell~~I~Ri~qPt~~V~~~~s~t~~~~~~l~e~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~a~~~r~l~Ils 406 (587)
T KOG2750|consen 330 AELLNHIIRIYQPTHFVEIEISNTKSHLPELGEPQHFSISGRDDFALELLPVQRAS---LNHTLSSRFHAKYLRTLKILS 406 (587)
T ss_pred HHHHHhHHhhcChhheeehhhhhhccCchhcCCCceeEEecccceeEEEecchhhh---cccccccchhHHHhhhHHHHH
Confidence 9999999999999999999987666555532 344433333344443333221 111223466799999999999
Q ss_pred HhhhcCCCCC--chhhhHHhhhhhcCCCCeeeecC-ceEEEEeecCCCchh--HHHHhhccEEEEEEcCC----C-----
Q 017141 244 YFRQCFPSDL--NITIIKELAQALAAYPPYQVPIS-SIKIRHLYCQVPRSE--IFYSLNATIVGLAISSD----A----- 309 (376)
Q Consensus 244 YF~~~~~~~~--~~~~~~~~~~~L~~~~P~~v~~~-~l~i~~~~~~v~~~~--i~~~lngslVaL~~~~~----~----- 309 (376)
||+...+... .+.... -..++....|+.+|.. .+......+++.+.+ ...++|++-|..+...+ +
T Consensus 407 y~~~~~~~~~~a~f~~~~-p~~~~~~~s~~~i~~~~~I~~~~~~Sdi~p~i~k~~~~i~as~v~~s~~~~~vs~~lg~~~ 485 (587)
T KOG2750|consen 407 YFSKNTPFDYAASFPPCL-PSAPLQISSPKGIPGIKGIQDRMEFSDLNPQIIKSALAINASDVYYSNLQDIVSKGLGNFP 485 (587)
T ss_pred HHHhhcCCchhhcccccC-CCchhhhcCccccchhhccccccchhhcchHhhhhheeecccccccccchhhhhcCCCCcc
Confidence 9997654321 000000 0011222344455433 233323344556665 44555555555443211 0
Q ss_pred --CCCCC---ceEEEEEEeeeecCCCEEEEEcCCCCCCCCcccEEEecc-ccCChhhhhccc
Q 017141 310 --SENLP---HCVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGF-IQIPTCLLQVTI 365 (376)
Q Consensus 310 --~~~~~---~~lGlgiVr~ID~~~~~i~iltP~~~~~l~~v~~Lv~G~-i~lP~~~~~~~~ 365 (376)
.+..| +|+|+|+||+||+||+.+||+||+|.+.++++++|++|. ++||.|++..+.
T Consensus 486 il~~~~P~~~nciGlGIvRgID~Er~il~ivtPvpl~~i~~vd~livg~ri~lpt~fl~~~~ 547 (587)
T KOG2750|consen 486 ILQDCTPSSKNCIGLGIVRGIDTERRILYIVTPVPLEKIEDVDCLLVGVRIQLPTCFLDFQP 547 (587)
T ss_pred eecCCCcCCccceeeEEEeeeecccceEEEecCCCHHHhccCCeEEEeeeccCCcceEeccC
Confidence 01222 499999999999999999999999999999999999996 999999997543
No 4
>COG5623 CLP1 Predicted GTPase subunit of the pre-mRNA cleavage complex [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-32 Score=255.04 Aligned_cols=290 Identities=19% Similarity=0.188 Sum_probs=214.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCC------------CCCCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLT------------PDLTIPCL 103 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~------------~~~~~~~~ 103 (376)
.+|+|||+|+...||||||++|++|+++.+++|.|+++||.|+.++.||+||+.+++... .|.++.+.
T Consensus 98 ~gp~v~vvGgsq~Gkts~~~tL~syalk~~~~pl~~nlDP~Qp~~~~PG~iSa~h~~~ilD~q~~~wGqSltsGaTll~~ 177 (424)
T COG5623 98 KGPTVMVVGGSQNGKTSFCFTLISYALKLGKKPLFTNLDPSQPGNIFPGAISAIHVDAILDCQEGLWGQSLTSGATLLRL 177 (424)
T ss_pred cCCEEEEECCCcCCceeHHHHHHHHHHHhcCCceEEecCCCCcccccCccccccchhhhhhhhcccccccccccchhhhc
Confidence 489999999999999999999999999999999999999999999999999999987632 13344566
Q ss_pred CCCceeEEcCCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccc--cHHHHHHHHHHhCCC
Q 017141 104 KTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGI--GYDILVDMLKYITPT 181 (376)
Q Consensus 104 ~~p~~~~f~G~~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~--G~~ll~~~i~~~~p~ 181 (376)
++| ++|+||.+++.+|+++|..++.+|...+.+|+.. ++..+.+++++|||..-+-. =.+++..+|+.|+++
T Consensus 178 K~P-lv~nfGl~~i~eN~~LY~l~~s~L~~aV~~r~hl-----~~d~r~sgC~vdTpSIsqldEnla~~~htiI~~f~vn 251 (424)
T COG5623 178 KNP-LVFNFGLTEITENMELYDLQTSKLQEAVKARNHL-----VEDLRLSGCPVDTPSISQLDENLAAFYHTIIKRFEVN 251 (424)
T ss_pred cCc-eEEecccCccccCHHHHHHHHHHHHHHHHhhhcc-----CccceeecCccCCcchhhhhHHHHHHHHHHHHheeee
Confidence 788 6899999999999999999999999999998632 33467889999999854321 146888899999999
Q ss_pred EEEEEecCcccccCCCCcccccCCCCcceEEEEecCCCCCCCcccccchHHHHHHHHHHHHHHhhhcCCCCCchhhhHHh
Q 017141 182 HVVKINISFEKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDLNITIIKEL 261 (376)
Q Consensus 182 ~Vv~l~~~~~~~~l~~~~~~~~~~~~~~v~vv~l~~~~~~~~~rs~~~~~~~~~~R~~~~~~YF~~~~~~~~~~~~~~~~ 261 (376)
.||+++++.....+... + .....-+++.+++..+. .++. ...-|.++.-.+++||||.....+++.
T Consensus 252 ivvVlgsErLy~s~k~~-~----~~~~~n~iffiskldG~-~~ve---~e~~rslQrrsI~~YFyGs~~~~lsP~----- 317 (424)
T COG5623 252 IVVVLGSERLYHSLKVI-A----EKLMINRIFFISKLDGF-VEVE---KEVGRSLQRRSISRYFYGSVNNELSPF----- 317 (424)
T ss_pred EEEEEcchHHHHHHHHH-H----hHHhhhheeeecccCCe-eehH---HHHHHHHHHhHHHHHhcccCCCccCce-----
Confidence 99999987543322210 0 00112247788888773 3322 223455666789999999765443211
Q ss_pred hhhhcCCCCeeeecCceEEEEeec---CC-----------C--chhHHHHhhccEEEEEEcCCCCCC----CCceEEEEE
Q 017141 262 AQALAAYPPYQVPISSIKIRHLYC---QV-----------P--RSEIFYSLNATIVGLAISSDASEN----LPHCVGLGI 321 (376)
Q Consensus 262 ~~~L~~~~P~~v~~~~l~i~~~~~---~v-----------~--~~~i~~~lngslVaL~~~~~~~~~----~~~~lGlgi 321 (376)
.+.|.+..+.+++... .+ + ...-...|.++|.|+....+..+. -++++||++
T Consensus 318 --------t~~Vdy~~lvv~~~e~~~~nvs~~~~G~~e~~~~v~t~~~~vlqnsIlais~a~e~eDqATV~~SpIlGyv~ 389 (424)
T COG5623 318 --------TFNVDYKWLVVRIGEMYVANVSALPLGSTEKVGCVETSDVEVLQNSILAISEAREIEDQATVAGSPILGYVV 389 (424)
T ss_pred --------EEeecceEEEEEEeecccCccccccccceeeeeeEecccHHHhhhheeeeehhhhccccceecCCceeEEEE
Confidence 1345555565555221 11 1 112235578899998766443221 247899999
Q ss_pred EeeeecCCCEEEEEcCCCCCCCCcccEEEecccc
Q 017141 322 VRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQ 355 (376)
Q Consensus 322 Vr~ID~~~~~i~iltP~~~~~l~~v~~Lv~G~i~ 355 (376)
|..+|..|+++.||.|+|+.++.+ .|+.|..+
T Consensus 390 v~~v~~~krklriL~pvP~~lps~--alI~g~~k 421 (424)
T COG5623 390 VINVGAFKRKLRILCPVPRLLPST--ALIQGDLK 421 (424)
T ss_pred EEEchhhhhceeEeccCCCCCCcc--eeeeeccc
Confidence 999999999999999999999987 67778654
No 5
>PF06807 Clp1: Pre-mRNA cleavage complex II protein Clp1; InterPro: IPR010655 This entry consists of several pre-mRNA cleavage complex II Clp1 (or HeaB) proteins. Six different protein factors are required in vitro for 3' end formation of mammalian pre-mRNAs by endonucleolytic cleavage and polyadenylation. Clp1 is a subunit of cleavage complex IIA, which is required for cleavage, but not for polyadenylation of pre-mRNA []. This entry also includes nucleolar proteins [].; PDB: 2NPI_A.
Probab=99.97 E-value=3.6e-32 Score=247.11 Aligned_cols=190 Identities=36% Similarity=0.632 Sum_probs=108.2
Q ss_pred CccccccHHHHHHHHHHhCCCEEEEE-ecCcccccCCCCcccccCC-CCcceEEEEecCCCCCCCcccccchHHHHHHHH
Q 017141 161 GWVKGIGYDILVDMLKYITPTHVVKI-NISFEKKNLPAGAFWLDNF-EGVDVNLIEISSARQDSFNRSVLVQKDARLLRD 238 (376)
Q Consensus 161 Gwv~g~G~~ll~~~i~~~~p~~Vv~l-~~~~~~~~l~~~~~~~~~~-~~~~v~vv~l~~~~~~~~~rs~~~~~~~~~~R~ 238 (376)
|||+|.|+++|.++++.++|||||+| +.+ + +.++....+.... ....+++++++++++. ..++ +..+++.|+
T Consensus 1 GWvkG~G~~lL~~ii~~~~pt~vv~l~~~~-~-~~~~~l~~~~~~~~~~~~v~vv~l~~s~g~-~~~~---~~~~~~~R~ 74 (195)
T PF06807_consen 1 GWVKGLGLELLSHIIRAFEPTHVVVLSGSP-E-RLYPDLKRDLPNKKSGWTVNVVKLPKSGGV-VERS---KLFARDLRE 74 (195)
T ss_dssp --------HHHHHHHHHTT--EEEEE--SS---CHHHHHHHHHHHHH---GGGEEEE---TT---------HHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhCCCCEEEEECCCc-h-hhhhhhhHhhhcccccceEEEEEecCCCCC-cccC---HHHHHHHHH
Confidence 89999999999999999999999999 431 1 1111101111110 0112678899998874 3333 566889999
Q ss_pred HHHHHHhhhcCCCCCchhhhHHhhhhhcCCCCeeeecCceEEEE-eecCCCchhHHHHhhccEEEEEEcCCCCCC--CCc
Q 017141 239 LRIMAYFRQCFPSDLNITIIKELAQALAAYPPYQVPISSIKIRH-LYCQVPRSEIFYSLNATIVGLAISSDASEN--LPH 315 (376)
Q Consensus 239 ~~~~~YF~~~~~~~~~~~~~~~~~~~L~~~~P~~v~~~~l~i~~-~~~~v~~~~i~~~lngslVaL~~~~~~~~~--~~~ 315 (376)
+++++|||+....++... +...++.+..||+++++++++.. .+.++++.++.++|||+|||||.....++. .++
T Consensus 75 ~~i~~YF~~~~~~~l~p~---~~~~~l~~~~p~~v~~~~~~l~~~~~~~~~~~~i~~~L~~sival~~~~~~~~~~~~~~ 151 (195)
T PF06807_consen 75 LRIRSYFYGCQRNPLSPH---SFTVPLSDLTPYRVPFPDSALPIGMHSDVPPSHILAALNGSIVALCSPASSPEDPLDSN 151 (195)
T ss_dssp HHHHHHHH--TTT-B--E---EEEEECCC-EEEEECCCCT---T---S-EEE---HHHHTTEEEEEESS-TT--HHTTS-
T ss_pred HHHHHHHhhccccCCCCc---ccccchhHCcEEEeeccccccccccccccCHHHHHHHhhhcEEEEEecccCCCCcccCe
Confidence 999999999765444322 23457888899999999999875 677889999999999999999983222221 247
Q ss_pred eEEEEEEeeeecCCCEEEEEcCCCCCCCCcccEEEeccccCChh
Q 017141 316 CVGLGIVRGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQIPTC 359 (376)
Q Consensus 316 ~lGlgiVr~ID~~~~~i~iltP~~~~~l~~v~~Lv~G~i~lP~~ 359 (376)
|+|||+||+||.+++++|||||+|++.|+.+|+|++|++++|.|
T Consensus 152 ~~G~~~Vr~VD~~~~~l~iLtP~p~~~L~~~~~Lv~g~i~~p~~ 195 (195)
T PF06807_consen 152 CLGFGIVRSVDEEKRKLYILTPVPGERLEPVNVLVLGSIELPDC 195 (195)
T ss_dssp EEEEEEEEEEETTTTEEEEEESSSS------SEEEEEE------
T ss_pred eEEEEEEEEEECCCCEEEEEcCCChhhcCCCCEEEEcCCcccCC
Confidence 99999999999999999999999999999999999999999986
No 6
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=99.56 E-value=1.3e-15 Score=131.69 Aligned_cols=114 Identities=31% Similarity=0.349 Sum_probs=77.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE-EEcCCCCCCCCCCCce----------EEEEecccCCCCCCCCCC-CC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA-YLDTDVGQPEFTAPGF----------LSLTVVDTLTPDLTIPCL-KT 105 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~-~lDlD~GQ~~~~~PG~----------vSl~~i~~~~~~~~~~~~-~~ 105 (376)
|+|+|||++|||||||++.|+|+|.++|++|+ +.|+|.||.++.+||+ +++...+++.......+. ..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r~~aGA~~~~~~~~~~~~~~~~~~~~~~ 80 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWRFKAGADVVLVSSDEPIALETQFHQRKS 80 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHHHHCT-SEEEEECSSEEEEEEECSCCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcccCCCCcccccccccceEEEEEcCCceeeeeeccccCC
Confidence 68999999999999999999999999999988 9999999999999999 999988873211110000 11
Q ss_pred -----------CceeEEcCCCCCCCChHHHHHHHH---HHHHHHHHHhhhcccCCCCCCCCCcEEEeC
Q 017141 106 -----------PKRCYFFGDVSSKRDPTAYLKYIT---TLYDYYRKEYYMFNESESPGRTELPLIVNT 159 (376)
Q Consensus 106 -----------p~~~~f~G~~sp~~~~~~y~~~v~---~L~~~~~~~~~~~~~~~~~~~~~~~lIInT 159 (376)
....++.|+.++...|+ +.++. ++.+.+..+. ..+..+.+++||||
T Consensus 81 ~~L~~~~~~~~~Dlvl~eG~k~~~~~pk--i~~~~~~~~~~~~~~~~~------~~~~~~~~~~ii~~ 140 (140)
T PF03205_consen 81 MDLEELLSLLPVDLVLVEGFKSPSPNPK--IEVVRNEEELEELVKRRA------VAPKVDESGKIINT 140 (140)
T ss_dssp CBHHHHHHHCC-SEEEEESSSSGGGSCE--EEEESSCCHHHHHTCCHC------CECCHCHS-EEE--
T ss_pred CCHHHHHHhhCCCEEEEecCCCcccCCC--EEEEECccCHHHHhhhhh------hhhhhccceEEEeC
Confidence 23689999999888887 33333 4444333321 01234678899998
No 7
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.08 E-value=2.2e-10 Score=107.28 Aligned_cols=136 Identities=20% Similarity=0.257 Sum_probs=104.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCC
Q 017141 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGD 114 (376)
Q Consensus 35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~ 114 (376)
..+..|+|+|..|||||||+..|..++-.++..+++++|||.--+...|..|... +.. ..+.....|-+|.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIR--DtV-------kYkEvMkqY~LGP 87 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIR--DTV-------KYKEVMKQYQLGP 87 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchh--hhh-------hHHHHHHHhCCCC
Confidence 4578999999999999999999999999999899999999999888888777654 211 1111223456664
Q ss_pred CC-CCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccc----cHHHHHHHHHHhCCCEEEEEecC
Q 017141 115 VS-SKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGI----GYDILVDMLKYITPTHVVKINIS 189 (376)
Q Consensus 115 ~s-p~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~----G~~ll~~~i~~~~p~~Vv~l~~~ 189 (376)
+. ...+.++|...+.+.++.++++-. .-..+||||||.|+-+ .-.++.+.+....|+.|+++-+.
T Consensus 88 NGgI~TsLNLF~tk~dqv~~~iek~~~----------~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt 157 (366)
T KOG1532|consen 88 NGGIVTSLNLFATKFDQVIELIEKRAE----------EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDT 157 (366)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhc----------ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecC
Confidence 43 356789999999999988887732 2347899999998753 22678888888999999988764
No 8
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.78 E-value=1.3e-09 Score=102.47 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=34.1
Q ss_pred EEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEE
Q 017141 42 ICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSL 88 (376)
Q Consensus 42 V~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl 88 (376)
|+||.||||||||+.+..++...++++++|++||+.-++..+..+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDi 47 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDI 47 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHH
Confidence 78999999999999999999999999999999999998766666554
No 9
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.64 E-value=5.7e-08 Score=88.13 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=83.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSS 117 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~sp 117 (376)
.-++|+||.||||||+|+.+.++..+.|+.+-+|++||.+-.|-.|-++.+.-+-+.- + ..--+=+|.+
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvd-D--------VmEdl~~GPN-- 72 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVD-D--------VMEDLDLGPN-- 72 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHH-H--------HHHHhccCCC--
Confidence 4589999999999999999999999999999999999999999999888764222110 0 0001223322
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCcccccc-----HHHHHHHHH-HhCCCEEEEEecC
Q 017141 118 KRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIG-----YDILVDMLK-YITPTHVVKINIS 189 (376)
Q Consensus 118 ~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~G-----~~ll~~~i~-~~~p~~Vv~l~~~ 189 (376)
+- .+-|++.|++.....-. + -......-+|+|+||.|+=.. .+++.++-+ .|++-.|..+++.
T Consensus 73 -Gg---Lv~cmEyl~~NldwL~~---~--~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsq 141 (273)
T KOG1534|consen 73 -GG---LVYCMEYLLENLDWLEE---E--IGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQ 141 (273)
T ss_pred -cc---chhHHHHHHHHHHHHHh---h--ccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccc
Confidence 11 12244444444332210 0 011245679999999987432 234444444 5667777777653
No 10
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.52 E-value=2.4e-07 Score=85.43 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=78.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCCCCCC
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSSKR 119 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~sp~~ 119 (376)
.+|+||+||||||+|.-....+-..|+++++|++||+.-.+..|.-++...+-+... -...+=+| |.+
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~ed---------vm~~~~LG---PNg 72 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVED---------VMEELGLG---PNG 72 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHH---------HHHHhCCC---Cch
Confidence 589999999999999999999999999999999999999998888888654433100 00012223 222
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccc-----cHHHHHHHHHHhCCCEE
Q 017141 120 DPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGI-----GYDILVDMLKYITPTHV 183 (376)
Q Consensus 120 ~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~-----G~~ll~~~i~~~~p~~V 183 (376)
....-++....=.+.+.++++. .+..-+++|.||.|+=+ -..+++.+.+ .+...+
T Consensus 73 ~l~yc~E~l~~~idwl~~~l~~--------~~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek-~~~rl~ 132 (290)
T KOG1533|consen 73 ALKYCMEYLEANIDWLLEKLKP--------LTDHYVLFDCPGQVELFTHHDSLNKIFRKLEK-LDYRLV 132 (290)
T ss_pred hHHHHHHHHHhhhHHHHHHhhh--------ccCcEEEEeCCCcEEEEeccchHHHHHHHHHH-cCceEE
Confidence 2222233333333555555432 25567999999998632 2345555544 444333
No 11
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=98.39 E-value=9e-06 Score=74.58 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=51.2
Q ss_pred CccCChhHHHHHHHhhccC----CCCCCCEEEEEcCC-CCcHHHHHHHHHHHHHH-cCCcEEEEcCCCCCCC
Q 017141 14 AIYIPREWSDAADSIAYDS----NTSPPPIAFICGAK-NCGKTTFSRHLVNVLLQ-RYKKVAYLDTDVGQPE 79 (376)
Q Consensus 14 ~~~ip~~W~~~~~~i~~~~----~~~~~~~vlV~G~~-~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~GQ~~ 79 (376)
.-.+-++|..+-..+.... .....++|.|+|+| |+||||++..|+-.+.+ .|++|++||+|+..+.
T Consensus 8 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~ 79 (207)
T TIGR03018 8 RSRIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPS 79 (207)
T ss_pred CCHHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChh
Confidence 3446677888877765211 22346789999877 99999999999999986 6999999999998765
No 12
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.34 E-value=2.3e-06 Score=86.68 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=38.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
+.+|+++|+.||||||++.-|+.++.++|++|+++++|+.++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 568999999999999999999999988899999999998763
No 13
>PRK13768 GTPase; Provisional
Probab=98.34 E-value=2.7e-06 Score=80.73 Aligned_cols=42 Identities=29% Similarity=0.342 Sum_probs=38.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
..++|.|+.|+||||++..++.++...|++|+++|+||+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~ 44 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEY 44 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCcccc
Confidence 468999999999999999999999999999999999997654
No 14
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.31 E-value=3.9e-06 Score=74.46 Aligned_cols=40 Identities=30% Similarity=0.424 Sum_probs=36.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
.++++|+.|+||||+++.|+..+.+.+.+|+++|+|+..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~ 41 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRP 41 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCCh
Confidence 5889999999999999999999999999999999998544
No 15
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.28 E-value=4.3e-06 Score=80.21 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=37.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
++.+|+++|+.|+||||.+.-|+.++.+.|++|+++|+|+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 3568999999999999999999999999999999999997
No 16
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.25 E-value=3.3e-06 Score=85.99 Aligned_cols=43 Identities=26% Similarity=0.398 Sum_probs=39.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
.+.+|+++|+.|+||||+++.|+.++.+.|++|+++++|+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 3668999999999999999999999999999999999998543
No 17
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=1.2e-05 Score=80.10 Aligned_cols=43 Identities=28% Similarity=0.303 Sum_probs=39.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
.+..++++|++|+||||++.-|+.++.+++.+|.++++|+..+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 4678999999999999999999999989999999999997744
No 18
>PRK10867 signal recognition particle protein; Provisional
Probab=98.22 E-value=6.2e-06 Score=83.83 Aligned_cols=120 Identities=23% Similarity=0.324 Sum_probs=71.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDV 115 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~ 115 (376)
+.+|+++|+.||||||++.-|+.++.++ |.+|+++|+|+-.+. . ++... .+. ....-| ++...
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a-----a-----~eQL~-~~a-~~~gv~----v~~~~ 163 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA-----A-----IEQLK-TLG-EQIGVP----VFPSG 163 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH-----H-----HHHHH-HHH-hhcCCe----EEecC
Confidence 5689999999999999999999999988 999999999985432 1 11100 000 001111 12211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccc--cccHHHHHHHHHHhCCCEEEEEec
Q 017141 116 SSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVK--GIGYDILVDMLKYITPTHVVKINI 188 (376)
Q Consensus 116 sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~--g~G~~ll~~~i~~~~p~~Vv~l~~ 188 (376)
...+|.... .+..+..+. .....+||||+|... ....+-+..+.+..+|+.++.+-+
T Consensus 164 -~~~dp~~i~---~~a~~~a~~------------~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVld 222 (433)
T PRK10867 164 -DGQDPVDIA---KAALEEAKE------------NGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVD 222 (433)
T ss_pred -CCCCHHHHH---HHHHHHHHh------------cCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEe
Confidence 123443222 222221111 123469999999753 234456667777888988766554
No 19
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=98.22 E-value=4.8e-06 Score=69.68 Aligned_cols=36 Identities=33% Similarity=0.375 Sum_probs=35.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
|++.|..|+||||++..|+.++.+++++|.++|+|+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 789999999999999999999999999999999999
No 20
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.12 E-value=8.9e-06 Score=82.64 Aligned_cols=120 Identities=20% Similarity=0.329 Sum_probs=71.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDV 115 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~ 115 (376)
+..++++|+.|+||||++.-|+.++. +.|.+|+++|+|+-.+. .+- -+..... ...-| .+..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~-----a~~--QL~~~a~-----~~gvp--~~~~~~- 163 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA-----AIE--QLKVLGQ-----QVGVP--VFALGK- 163 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH-----HHH--HHHHHHH-----hcCCc--eEecCC-
Confidence 45899999999999999999999986 57899999999984442 000 0000000 01112 122221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccc--cccHHHHHHHHHHhCCCEEEEEec
Q 017141 116 SSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVK--GIGYDILVDMLKYITPTHVVKINI 188 (376)
Q Consensus 116 sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~--g~G~~ll~~~i~~~~p~~Vv~l~~ 188 (376)
..+|... ..+..+....+ ....+||||+|-.. ....+-+.++.+.++|+.++.+-+
T Consensus 164 --~~~P~~i---~~~al~~~~~~------------~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvd 221 (428)
T TIGR00959 164 --GQSPVEI---ARRALEYAKEN------------GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVD 221 (428)
T ss_pred --CCCHHHH---HHHHHHHHHhc------------CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEe
Confidence 2345321 22222221111 23469999999753 334566677788888988776654
No 21
>PRK14974 cell division protein FtsY; Provisional
Probab=98.07 E-value=1.5e-05 Score=78.56 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=37.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
+.+|+++|+.|+||||+++.|+.++...+.+|+++++|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 5789999999999999999999999888899999999954
No 22
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=98.05 E-value=5.3e-05 Score=69.04 Aligned_cols=43 Identities=23% Similarity=0.236 Sum_probs=39.9
Q ss_pred CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.++|+|++.+ |+||||++..|+..+.+.|.+|+++|+|+..+.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~ 60 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSV 60 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChh
Confidence 6789999888 999999999999999999999999999998765
No 23
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.02 E-value=2.2e-05 Score=78.55 Aligned_cols=122 Identities=25% Similarity=0.371 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDV 115 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~ 115 (376)
++.+||++|=.||||||.|--|++|+-+++++|.++-||+--|- .+++.- .+......-|||.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpA----------A~eQL~------~La~q~~v~~f~~- 161 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPA----------AIEQLK------QLAEQVGVPFFGS- 161 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChH----------HHHHHH------HHHHHcCCceecC-
Confidence 46799999999999999999999999999999999999976543 223310 0000012237777
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCcccc--ccHHHHHHHHHHhCCCEEEEEecC
Q 017141 116 SSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKG--IGYDILVDMLKYITPTHVVKINIS 189 (376)
Q Consensus 116 sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g--~G~~ll~~~i~~~~p~~Vv~l~~~ 189 (376)
....+|.. .+.+-++..++. ....+||||-|-..- .=.+-+.++-+.++||.++.+-+.
T Consensus 162 ~~~~~Pv~---Iak~al~~ak~~------------~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa 222 (451)
T COG0541 162 GTEKDPVE---IAKAALEKAKEE------------GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA 222 (451)
T ss_pred CCCCCHHH---HHHHHHHHHHHc------------CCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 33445642 233333333322 345799999996442 123455667788999998887653
No 24
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.00 E-value=1.5e-05 Score=72.76 Aligned_cols=41 Identities=32% Similarity=0.384 Sum_probs=35.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
|.+|+++|++|+||||.+--|+.++..++++|+++-+|...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 35799999999999999999999999889999999998654
No 25
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=97.98 E-value=6.8e-05 Score=71.57 Aligned_cols=44 Identities=20% Similarity=0.208 Sum_probs=39.4
Q ss_pred CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.+.+|+|.+++ |.||||++..|+-.+.+.|++|.+||+|+..+.
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~ 146 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPV 146 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCcc
Confidence 45678888776 899999999999999999999999999998876
No 26
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=5.6e-05 Score=74.51 Aligned_cols=123 Identities=24% Similarity=0.350 Sum_probs=81.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCC
Q 017141 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGD 114 (376)
Q Consensus 35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~ 114 (376)
..+.+||++|=.|+||||.|.-|++|+-++|++|+++-.|. .-+..+++.-.. ... .+.=|||+
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDT----------FRagAfDQLkqn--A~k----~~iP~ygs 162 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADT----------FRAGAFDQLKQN--ATK----ARVPFYGS 162 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecc----------cccchHHHHHHH--hHh----hCCeeEec
Confidence 34679999999999999999999999999999999998883 333334432100 001 13448887
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccc-c-HHHHHHHHHHhCCCEEEEEecC
Q 017141 115 VSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGI-G-YDILVDMLKYITPTHVVKINIS 189 (376)
Q Consensus 115 ~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~-G-~~ll~~~i~~~~p~~Vv~l~~~ 189 (376)
.+-. +|- ....+=.+.++++ +-.-+|+||.|--+-. + .+-+.++.++++||.||.+-+.
T Consensus 163 yte~-dpv---~ia~egv~~fKke------------~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDa 223 (483)
T KOG0780|consen 163 YTEA-DPV---KIASEGVDRFKKE------------NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDA 223 (483)
T ss_pred cccc-chH---HHHHHHHHHHHhc------------CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEec
Confidence 5532 332 2222223333332 3456899999976542 2 4667788899999998877654
No 27
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.87 E-value=2e-05 Score=69.59 Aligned_cols=40 Identities=33% Similarity=0.384 Sum_probs=34.9
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 40 vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
|.|.+.| |+||||++..|+-.+.++|.+|+++|+|+.|+.
T Consensus 2 i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~ 42 (179)
T cd02036 2 IVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRN 42 (179)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Confidence 4555554 999999999999999999999999999998765
No 28
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=97.85 E-value=2.6e-05 Score=72.87 Aligned_cols=42 Identities=36% Similarity=0.388 Sum_probs=37.1
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141 39 IAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (376)
Q Consensus 39 ~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (376)
+|.|++.| |+||||++..|+..+.+.|++|+++|+|+.|+..
T Consensus 2 ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~ 44 (251)
T TIGR01969 2 IITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANL 44 (251)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccc
Confidence 56777777 8999999999999999999999999999987653
No 29
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.84 E-value=2.4e-05 Score=68.16 Aligned_cols=40 Identities=35% Similarity=0.462 Sum_probs=37.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
++.++|+.|+||||+++.|+-++.+.+.++.++|+|++++
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~ 40 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSP 40 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCC
Confidence 3789999999999999999999999999999999998764
No 30
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.84 E-value=3.1e-05 Score=68.07 Aligned_cols=45 Identities=36% Similarity=0.414 Sum_probs=39.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCc
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG 84 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG 84 (376)
+.|+|++|||||||++.|+..+.++|.+|+++..|.+..++..||
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~~~~d~~~ 46 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHDFDIDKNG 46 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccccCCCcc
Confidence 689999999999999999999988899999999986655555554
No 31
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.83 E-value=8.4e-05 Score=71.19 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=37.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
++.+++++|+.|+||||+++.|+.++...+.++.++++|..+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 457999999999999999999999988888899999999554
No 32
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.81 E-value=2.7e-05 Score=72.23 Aligned_cols=49 Identities=29% Similarity=0.324 Sum_probs=43.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcC-CcEEEEcCCCCCCCCCCCceEEEEe
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRY-KKVAYLDTDVGQPEFTAPGFLSLTV 90 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~-~~v~~lDlD~GQ~~~~~PG~vSl~~ 90 (376)
+|.|||--||||||++.+|+-+++.++ +.|..+|+|| ++..|+.+.+-.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp---d~nL~~~LGve~ 51 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP---DSNLPEALGVEE 51 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC---CCChHHhcCCCC
Confidence 699999999999999999888888877 9999999999 667788777643
No 33
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.78 E-value=4.2e-05 Score=68.01 Aligned_cols=39 Identities=31% Similarity=0.348 Sum_probs=36.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..|.++|.+||||||+++.|+..+...+.++.++|.|
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 477999999999999999999999998888889999998
No 34
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.77 E-value=2.6e-05 Score=68.54 Aligned_cols=38 Identities=37% Similarity=0.458 Sum_probs=35.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
|..|.++|-.||||||+|+.|..+|...|.++++||.|
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 56899999999999999999999999999999999998
No 35
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=97.77 E-value=4e-05 Score=71.94 Aligned_cols=43 Identities=33% Similarity=0.438 Sum_probs=38.2
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (376)
++|.|++.| |+||||++-.|+-.+.+.|++|+++|+|++++..
T Consensus 2 ~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~ 45 (261)
T TIGR01968 2 RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNL 45 (261)
T ss_pred eEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCe
Confidence 467787777 8999999999999999999999999999987653
No 36
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=97.75 E-value=4.6e-05 Score=70.91 Aligned_cols=42 Identities=36% Similarity=0.472 Sum_probs=38.1
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
+.|.++-.| |+||||.+..|+..+.++|.+|.++|+||.|+.
T Consensus 2 ~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred CeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 456777777 899999999999999999999999999999986
No 37
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.75 E-value=4.2e-05 Score=74.96 Aligned_cols=43 Identities=26% Similarity=0.273 Sum_probs=39.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
.+.+++++|++|+||||+++.|+.++...+++|.++|+|+.+.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~ 155 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA 155 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch
Confidence 4679999999999999999999999998999999999998554
No 38
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.74 E-value=4.8e-05 Score=61.55 Aligned_cols=37 Identities=32% Similarity=0.382 Sum_probs=34.7
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 40 vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
|.|.|.| |+||||+++.|+.++.+++.++.++|+|+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 6788877 999999999999999999999999999988
No 39
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.74 E-value=8.1e-05 Score=72.35 Aligned_cols=56 Identities=29% Similarity=0.218 Sum_probs=46.4
Q ss_pred HHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 21 WSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 21 W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
...+++.+.. ....+.+|.|+|++|+|||||+..|+..+.+.+.+|.++++|+..+
T Consensus 20 ~~~~~~~~~~--~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~ 75 (300)
T TIGR00750 20 AKQLLDRIMP--YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSP 75 (300)
T ss_pred HHHHHHhCCc--ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 4556666642 2235789999999999999999999999999999999999998654
No 40
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.73 E-value=5e-05 Score=71.14 Aligned_cols=41 Identities=32% Similarity=0.429 Sum_probs=37.3
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
++|.|.+.| |+||||++..|+-++.++|++|+++|+||.++
T Consensus 2 ~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ~s 43 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRP 43 (231)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 368888888 89999999999999999999999999999655
No 41
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=97.71 E-value=3.9e-05 Score=68.58 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=33.6
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 40 vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
|+|.|.| |+||||++..|+.++.++|++|+++|+|+..+.
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~ 41 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPN 41 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHH
T ss_pred CEEEcCCCCccHHHHHHHHHhccccccccccccccCccccc
Confidence 3455555 999999999999999999999999999987654
No 42
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.70 E-value=6.1e-05 Score=72.30 Aligned_cols=48 Identities=27% Similarity=0.220 Sum_probs=41.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEE
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLS 87 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vS 87 (376)
+.|-|+|.+|||||||+..|+..|.++| +|++++.|+.+.+- .||.=|
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~-~~g~Ds 49 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLN-PDGTDT 49 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCC-CCCCCc
Confidence 4689999999999999999999999999 89999999987543 666433
No 43
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.69 E-value=0.0001 Score=72.61 Aligned_cols=45 Identities=29% Similarity=0.271 Sum_probs=41.0
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
..+.+|-|+|++|+|||||+..|+.++.+.+++|.++..||..+.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~ 98 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTR 98 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccc
Confidence 346799999999999999999999999999999999999997653
No 44
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=97.68 E-value=6.5e-05 Score=71.18 Aligned_cols=42 Identities=26% Similarity=0.242 Sum_probs=37.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.+|.|+|--|+||||+|..|+-.|.++|++|++||+||..+.
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~n~ 43 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKADS 43 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCCCc
Confidence 367788877999999999999999999999999999997654
No 45
>PRK07667 uridine kinase; Provisional
Probab=97.67 E-value=0.00011 Score=66.79 Aligned_cols=51 Identities=22% Similarity=0.147 Sum_probs=40.9
Q ss_pred HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 23 ~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.+++.+.+.. .....|.|+|+.||||||+|+.|+..+-+.+.++.++++|-
T Consensus 5 ~~~~~~~~~~--~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd 55 (193)
T PRK07667 5 ELINIMKKHK--ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDD 55 (193)
T ss_pred HHHHHHHhcC--CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 4455554322 23578999999999999999999999988888999999984
No 46
>CHL00175 minD septum-site determining protein; Validated
Probab=97.67 E-value=6.6e-05 Score=71.90 Aligned_cols=44 Identities=30% Similarity=0.374 Sum_probs=39.1
Q ss_pred CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141 37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (376)
Q Consensus 37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (376)
+.+|.|+|.| |+||||++..|+-.+.+.|++|+++|+|++++..
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l 59 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNL 59 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCh
Confidence 4678888876 8999999999999999999999999999987653
No 47
>PRK10818 cell division inhibitor MinD; Provisional
Probab=97.66 E-value=7.5e-05 Score=71.00 Aligned_cols=43 Identities=33% Similarity=0.405 Sum_probs=38.6
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (376)
.+|.|++.| |+||||++-.|+-.+.++|++|+++|+|++++..
T Consensus 3 kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~ 46 (270)
T PRK10818 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNL 46 (270)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCCh
Confidence 468888877 8999999999999999999999999999987653
No 48
>PHA02518 ParA-like protein; Provisional
Probab=97.66 E-value=8.2e-05 Score=67.60 Aligned_cols=39 Identities=31% Similarity=0.308 Sum_probs=35.9
Q ss_pred EEEEEcCCC-CcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 39 IAFICGAKN-CGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 39 ~vlV~G~~~-sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
+|.|.+.|| +||||++..|+-+|.++|++|+++|+|+-.
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~ 41 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQG 41 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 688999995 999999999999999999999999999854
No 49
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.65 E-value=6.9e-05 Score=56.58 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
.|.|+|+.||||||+++.|.+++ .+.++.++|-
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l--~~~~~~~i~~ 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL--GGRSVVVLDE 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence 37899999999999999999998 6678888876
No 50
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.65 E-value=7.3e-05 Score=66.09 Aligned_cols=40 Identities=30% Similarity=0.351 Sum_probs=34.7
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 40 vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
|.|+++| |+||||++..|+.++.+.|++|.++|+|+..+.
T Consensus 2 i~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~ 42 (169)
T cd02037 2 IAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPS 42 (169)
T ss_pred EEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCC
Confidence 4555555 999999999999999999999999999996643
No 51
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.65 E-value=4.5e-05 Score=62.88 Aligned_cols=39 Identities=31% Similarity=0.396 Sum_probs=32.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
+..++|+|++|+||||+++.|++.+...+..+.+++++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 468999999999999999999999876655677776653
No 52
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.62 E-value=7.7e-05 Score=61.76 Aligned_cols=23 Identities=30% Similarity=0.598 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|+|+|++||||||+|+.|++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999987
No 53
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=97.61 E-value=0.00085 Score=72.93 Aligned_cols=59 Identities=27% Similarity=0.337 Sum_probs=46.8
Q ss_pred HHHHHHHhhc----cCCCCCCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 21 WSDAADSIAY----DSNTSPPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 21 W~~~~~~i~~----~~~~~~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
..+++..|.. ......+.+|+|.|.+ |.||||++..|+..+...|.+|.+||+|+..+.
T Consensus 511 ~~Ea~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~ 574 (726)
T PRK09841 511 AVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGY 574 (726)
T ss_pred HHHHHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCc
Confidence 5555554432 1122346799999988 999999999999999999999999999998775
No 54
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.61 E-value=0.00012 Score=64.62 Aligned_cols=47 Identities=28% Similarity=0.371 Sum_probs=39.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCc
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG 84 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG 84 (376)
+.+.|+|.+|||||||++.|+..+-..|.+|.++..|...-++..||
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~~~~d~~g 48 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHDFDIDTPG 48 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCCcccccCcc
Confidence 47899999999999999999999988899999998876654443444
No 55
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.60 E-value=9.6e-05 Score=65.74 Aligned_cols=39 Identities=36% Similarity=0.550 Sum_probs=34.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
++..|+++|..||||||+++.|++++...+..+.++|.|
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d 44 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGD 44 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecH
Confidence 467999999999999999999999998777888888754
No 56
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.59 E-value=9.8e-05 Score=71.20 Aligned_cols=42 Identities=29% Similarity=0.298 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-C-CcEEEEcCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-Y-KKVAYLDTDVGQ 77 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~-~~v~~lDlD~GQ 77 (376)
.+..++++|++|+||||++..|+.++..+ + ++|.++++|+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 35699999999999999999999999876 4 899999999743
No 57
>PRK08118 topology modulation protein; Reviewed
Probab=97.59 E-value=5.4e-05 Score=67.30 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=22.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++|+|+|+.||||||||+.|++.+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999987
No 58
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=97.58 E-value=9.8e-05 Score=70.76 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=37.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
.+|.|+|--|+||||+|-.|+-.|.+.|++|+++|+||+.+
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~n 42 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKAD 42 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCccc
Confidence 36788897799999999999999999999999999999844
No 59
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=97.58 E-value=0.00015 Score=73.56 Aligned_cols=41 Identities=29% Similarity=0.286 Sum_probs=36.4
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.+|.|+..| |+||||++-.|+-.|...|++|++||+||. +.
T Consensus 122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ-~~ 163 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ-AS 163 (405)
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC-CC
Confidence 567777777 899999999999999999999999999994 44
No 60
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.57 E-value=0.00015 Score=60.48 Aligned_cols=38 Identities=29% Similarity=0.489 Sum_probs=32.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..++|.|++|+||||+++.+++.+...+..+.+++++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 56899999999999999999999998667777777664
No 61
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=97.57 E-value=0.00011 Score=69.86 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=35.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
.+|.|+|--|+||||++..|+-.|.++|++|++||+||.
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq 41 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPK 41 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 467777755999999999999999999999999999984
No 62
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=97.57 E-value=0.00021 Score=70.02 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=40.3
Q ss_pred CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.+.+|.|+|.| |+||||++-.|+-.+.+.|++|++||+|+..+.
T Consensus 92 ~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~ 136 (322)
T TIGR03815 92 RGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGG 136 (322)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 47899999988 899999999999999999999999999998765
No 63
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=97.57 E-value=0.00011 Score=68.46 Aligned_cols=39 Identities=31% Similarity=0.347 Sum_probs=35.9
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
++|.|+++| |+||||++..|+-.+.++|++|++||+|+.
T Consensus 2 ~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 2 KVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred cEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 468888877 999999999999999999999999999994
No 64
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.55 E-value=0.00013 Score=67.09 Aligned_cols=40 Identities=30% Similarity=0.253 Sum_probs=36.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
+|.|.|--|+||||++-.|+-.|.+.|++|.++|+||+-+
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~ 41 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKAD 41 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 5788897799999999999999999999999999998853
No 65
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00013 Score=73.15 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=45.8
Q ss_pred hhHHHHHHHhhc----c-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 19 REWSDAADSIAY----D-SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 19 ~~W~~~~~~i~~----~-~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
+-|..+++.+.. . .....+.+|+++|+.|+||||++..|+.++...+.+|.++++|+..
T Consensus 218 ~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 218 EVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred HHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 356666665431 1 1112357999999999999999999999999999999999999765
No 66
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=97.53 E-value=0.00012 Score=73.73 Aligned_cols=42 Identities=31% Similarity=0.315 Sum_probs=37.5
Q ss_pred CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
..+|.|.+.| |+||||+|..|+-.|.+.|++|++||+|| |+.
T Consensus 104 ~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~Dp-Q~~ 146 (387)
T TIGR03453 104 LQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDP-QAS 146 (387)
T ss_pred ceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCC-CCC
Confidence 3577888787 89999999999999999999999999998 765
No 67
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.53 E-value=0.00013 Score=68.80 Aligned_cols=58 Identities=28% Similarity=0.297 Sum_probs=44.6
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
...++++.+... +....+|=|.|++|+|||||.-.|..++.++|.+|++|-.||..+-
T Consensus 14 ~~~~ll~~l~~~--~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~ 71 (266)
T PF03308_consen 14 EARELLKRLYPH--TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPF 71 (266)
T ss_dssp HHHHHHHHHGGG--TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGC
T ss_pred HHHHHHHHHHhh--cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCC
Confidence 566777777632 2346899999999999999999999999999999999999997653
No 68
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.52 E-value=0.00016 Score=64.52 Aligned_cols=39 Identities=26% Similarity=0.375 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+.+|-+.|-.||||||++..|...|..+|+++++||.|
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGD 60 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGD 60 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecCh
Confidence 467999999999999999999999999999999999998
No 69
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.51 E-value=0.00033 Score=70.03 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=53.6
Q ss_pred CCCCCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 10 NPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 10 ~~~~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
...-.+..|++|+.+.... .+..+...+.|-|+|.+|||||||+..|+..|-++|++|+++--|...-+
T Consensus 179 ~~~~nINTpeDl~~l~~~~-~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h~~~ 247 (366)
T PRK14489 179 DAFFNVNTPEDLEQLRAIP-DGTTTGAPPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHSHHRVD 247 (366)
T ss_pred cccccCCCHHHHHHHhhhh-hcccCCCccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEECCcccC
Confidence 3567899999998876533 22222236799999999999999999999999999999999877654433
No 70
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=97.50 E-value=0.00021 Score=71.95 Aligned_cols=42 Identities=29% Similarity=0.324 Sum_probs=36.8
Q ss_pred CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcC-CCCCCC
Q 017141 37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDT-DVGQPE 79 (376)
Q Consensus 37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDl-D~GQ~~ 79 (376)
..+|.|+..| |+||||+|-.|+..|.+.|++|++||+ || |+.
T Consensus 106 ~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~Dp-Q~n 149 (388)
T PRK13705 106 PPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDP-QGT 149 (388)
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCC-CCc
Confidence 4677788887 899999999999999999999999996 87 554
No 71
>PRK06762 hypothetical protein; Provisional
Probab=97.47 E-value=0.00013 Score=64.23 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=29.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|+|+|+.||||||+++.|++++ +..+.+++.|
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l---~~~~~~i~~D 36 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL---GRGTLLVSQD 36 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEecHH
Confidence 3579999999999999999999987 3467777755
No 72
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.46 E-value=0.00024 Score=62.83 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=39.3
Q ss_pred hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
++|+++.+.+. ......++.++|.|++|+||||+++.+..++.+.+.-+..++++...
T Consensus 7 ~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~~ 64 (185)
T PF13191_consen 7 EEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDSE 64 (185)
T ss_dssp HHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETTT
T ss_pred HHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEeccc
Confidence 46777777774 22233578999999999999999999999998876558888888774
No 73
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.46 E-value=0.00016 Score=62.96 Aligned_cols=37 Identities=35% Similarity=0.514 Sum_probs=33.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.|+|+|.+||||||+++.|..++...+.++.++|.|.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~ 37 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDN 37 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 3789999999999999999999988888888888775
No 74
>PRK06696 uridine kinase; Validated
Probab=97.45 E-value=0.0003 Score=65.27 Aligned_cols=39 Identities=31% Similarity=0.357 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..|.|.|+.||||||||+.|+..+-..|..+..+-+|
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~D 59 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASID 59 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccc
Confidence 467999999999999999999999886666666665555
No 75
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=97.45 E-value=0.00021 Score=67.87 Aligned_cols=39 Identities=31% Similarity=0.340 Sum_probs=35.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
+|.|.|--|+||||+|..|+-.|.++|++|+++|+||+.
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq~ 40 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPKH 40 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 578889779999999999999999999999999999854
No 76
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=97.44 E-value=0.00021 Score=68.19 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=37.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.|.|.|--|+||||+|..|+-.|.++|++|+++|+||+.+.
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~ 42 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADS 42 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 47888977999999999999999999999999999999764
No 77
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.42 E-value=0.00022 Score=64.88 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=36.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
++..|.++|..||||||+++.|...+...|..+.++|.|.
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~ 62 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDN 62 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEe
Confidence 4679999999999999999999999988888899999885
No 78
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.41 E-value=0.00021 Score=61.27 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=35.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
++|+|++|+||||+++.++..+...+..+.|++.+..-.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 789999999999999999999999899999999976543
No 79
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.40 E-value=0.0004 Score=75.72 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=39.3
Q ss_pred CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.+.+|+|++.+ |+||||++..|+-.+.+.|++|++||+|+.++.
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~ 589 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAA 589 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchh
Confidence 35678888877 899999999999999999999999999999874
No 80
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.40 E-value=0.00024 Score=67.12 Aligned_cols=42 Identities=31% Similarity=0.296 Sum_probs=36.7
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHH-HcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLL-QRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll-~~~~~v~~lDlD~GQ~~ 79 (376)
.+|-|+..| |+||||++-.|+.+|. ..|++|+++|+||.++.
T Consensus 3 ~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~s~ 46 (259)
T COG1192 3 KIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQGSL 46 (259)
T ss_pred EEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcchh
Confidence 467888888 8999999999999999 55599999999998653
No 81
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.40 E-value=0.00025 Score=55.31 Aligned_cols=33 Identities=33% Similarity=0.510 Sum_probs=31.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
+++.|.+|+||||++..|+..+.+.|.+|.++|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 688999999999999999999999999999999
No 82
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.40 E-value=0.00037 Score=62.38 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=33.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.+.+-|+|++|||||||++.|+..+-..+.+|..+--|.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~ 44 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcC
Confidence 578999999999999999999999877788888876543
No 83
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.40 E-value=0.00023 Score=65.11 Aligned_cols=38 Identities=29% Similarity=0.374 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.+.+|.|+|+.|||||||++.|...+ .+..+.+++.|.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~ 42 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL--GDESIAVIPQDS 42 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh--CCCceEEEeCCc
Confidence 46799999999999999999999986 445677887774
No 84
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.39 E-value=0.00032 Score=57.43 Aligned_cols=48 Identities=29% Similarity=0.349 Sum_probs=40.7
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHc-CCcEEEEcCCCCCCCCCCCceEEEEecccC
Q 017141 40 AFICGAK-NCGKTTFSRHLVNVLLQR-YKKVAYLDTDVGQPEFTAPGFLSLTVVDTL 94 (376)
Q Consensus 40 vlV~G~~-~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~ 94 (376)
|.|+|.| |+||||.+..|+-.+.+. |++|.++|+|+.++. ...+++.|
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~-------D~IIiDtp 51 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------DYVVVDLG 51 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC-------CEEEEeCC
Confidence 5677777 899999999999999998 999999999999886 45555553
No 85
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.38 E-value=0.00027 Score=65.07 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=40.4
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
...+.+...... ..+..++++|++|+||||+++.+++++.+.+.++.|+|++
T Consensus 24 ~~~~~l~~~~~~---~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 24 ELLAALRQLAAG---KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred HHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 355555554321 2356899999999999999999999998888888888875
No 86
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.38 E-value=0.00021 Score=64.25 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.|.|+|+.||||||||+.|+..+-..+.++.++.+|
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~D 36 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLD 36 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehh
Confidence 378999999999999999999988778888888777
No 87
>PF13173 AAA_14: AAA domain
Probab=97.38 E-value=0.00024 Score=60.04 Aligned_cols=37 Identities=30% Similarity=0.530 Sum_probs=31.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
++.++|.|++++||||+++.++..+. ...++.|+|+|
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~ 38 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFD 38 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccC
Confidence 46899999999999999999999886 44567787776
No 88
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=97.37 E-value=0.0003 Score=66.22 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=37.7
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (376)
.+++|+|+| |+||||+++.|+-++.+++.+|.++|+||.++.+
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~ 46 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATF 46 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchh
Confidence 456677555 9999999999999999999999999999998764
No 89
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=97.36 E-value=0.0003 Score=68.12 Aligned_cols=41 Identities=27% Similarity=0.246 Sum_probs=37.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
+|.|.|--|+||||++-.|+-.|.+.|++|+++|+||+.+.
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ~n~ 42 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPKHDS 42 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCCCcc
Confidence 48899977999999999999999999999999999999654
No 90
>PRK11519 tyrosine kinase; Provisional
Probab=97.35 E-value=0.001 Score=72.16 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=46.4
Q ss_pred HHHHHHHhhcc----CCCCCCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 21 WSDAADSIAYD----SNTSPPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 21 W~~~~~~i~~~----~~~~~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
..+++..|..+ ....+..+|+|++.+ |.||||++..|+..+...|.+|.+||+|+..+.
T Consensus 506 ~~Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr~~~ 569 (719)
T PRK11519 506 AIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMRKGY 569 (719)
T ss_pred HHHHHHHHHHHhhhhccCCCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCc
Confidence 55566555321 122346789999955 999999999999999999999999999998875
No 91
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.34 E-value=0.00022 Score=64.59 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=29.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
|.|+|+.|||||||++.|.+.+ .+.++.++.+|-
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~ 35 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDS 35 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence 7899999999999999999987 556788888884
No 92
>PRK05439 pantothenate kinase; Provisional
Probab=97.34 E-value=0.00053 Score=66.90 Aligned_cols=54 Identities=28% Similarity=0.281 Sum_probs=36.6
Q ss_pred HHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCC
Q 017141 21 WSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTD 74 (376)
Q Consensus 21 W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD 74 (376)
+..++..+......+.+..|.|.|+.||||||+|+.|...+-+. +.+|.++.+|
T Consensus 70 ~~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~D 125 (311)
T PRK05439 70 LQAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTD 125 (311)
T ss_pred HHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecc
Confidence 44444444321223346789999999999999999999866442 4567766665
No 93
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=97.34 E-value=0.00032 Score=66.94 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=37.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
+|-|+|--|+||||++-.|+-.|.+.|++|.++|+||+.+.
T Consensus 3 ~iav~gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~ 43 (273)
T PRK13232 3 QIAIYGKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADS 43 (273)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhhCCCeEEEeccccccc
Confidence 56677877999999999999999999999999999999775
No 94
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=97.33 E-value=0.00032 Score=66.65 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=35.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
+|.|.|--|+||||+|-.|+-.|.+.|++|+++|+||+-
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~ 40 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKH 40 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 466778669999999999999999999999999999963
No 95
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.33 E-value=0.0056 Score=58.55 Aligned_cols=42 Identities=31% Similarity=0.437 Sum_probs=36.5
Q ss_pred CEEEE-EcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 38 PIAFI-CGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV-~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.+|+| .|..|.||||.+..|+.-+.+.|++|.++|+|...+.
T Consensus 58 ~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps 100 (265)
T COG0489 58 NVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPS 100 (265)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCc
Confidence 34555 4556999999999999999999999999999998876
No 96
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.33 E-value=0.00035 Score=63.75 Aligned_cols=39 Identities=33% Similarity=0.399 Sum_probs=36.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..++|+|++|||||+||..++..+.+.+.+|+|+|++
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 477999999999999999999999998899999999997
No 97
>PRK07261 topology modulation protein; Provisional
Probab=97.32 E-value=0.00021 Score=63.73 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+|+|+|+.|||||||++.|+..+
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998764
No 98
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.31 E-value=0.00026 Score=62.97 Aligned_cols=36 Identities=36% Similarity=0.506 Sum_probs=31.0
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 40 vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
|.|.++| |+||||++..|+-.+ .+|+++|+|++.+.
T Consensus 2 I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~ 38 (179)
T cd03110 2 IAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPN 38 (179)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCc
Confidence 5555555 999999999999988 68999999999876
No 99
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.31 E-value=0.00066 Score=73.29 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=34.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHH-HcC-CcEEEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLL-QRY-KKVAYLDTDV 75 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll-~~~-~~v~~lDlD~ 75 (376)
+.+|+++|+.|+||||.+..|+.++. +.| ++|.++++|.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt 225 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS 225 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc
Confidence 56899999999999999999999884 555 5899999995
No 100
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=97.30 E-value=0.00022 Score=66.98 Aligned_cols=41 Identities=34% Similarity=0.462 Sum_probs=30.5
Q ss_pred EEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141 40 AFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (376)
Q Consensus 40 vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (376)
|+|..+| |+||||.+-.|+-.|+++|.+|.++|+|..|+.+
T Consensus 3 IvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~ 44 (261)
T PF09140_consen 3 IVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSL 44 (261)
T ss_dssp EEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HH
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCH
Confidence 4444444 8999999999999999999999999999999864
No 101
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.30 E-value=0.00055 Score=66.24 Aligned_cols=40 Identities=35% Similarity=0.395 Sum_probs=30.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD~ 75 (376)
.+..|.|+|+.|||||||+|.|...+-+. +.+|.++.+|-
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG 102 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence 46788999999999999999998776432 34567766664
No 102
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.30 E-value=0.00018 Score=61.23 Aligned_cols=32 Identities=25% Similarity=0.577 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.|+++|++|||||||++.|+..+ ...+++.|-
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~-----~~~~i~~D~ 32 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL-----GAVVISQDE 32 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS-----TEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHC-----CCEEEeHHH
Confidence 48999999999999999998775 367788775
No 103
>PRK10037 cell division protein; Provisional
Probab=97.30 E-value=0.00034 Score=65.94 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=35.3
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 39 IAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 39 ~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
+|.|++.| |+||||+|..|+-.|.++|++|++||+|+.
T Consensus 3 ~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q 41 (250)
T PRK10037 3 ILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPD 41 (250)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 67888888 899999999999999999999999999994
No 104
>PRK06217 hypothetical protein; Validated
Probab=97.30 E-value=0.00022 Score=64.05 Aligned_cols=32 Identities=38% Similarity=0.467 Sum_probs=27.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+|+|+|..||||||+++.|+..+ ..-++|+|
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l-----~~~~~~~D 33 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERL-----DIPHLDTD 33 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-----CCcEEEcC
Confidence 379999999999999999999886 34477777
No 105
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.29 E-value=0.00046 Score=61.00 Aligned_cols=49 Identities=35% Similarity=0.339 Sum_probs=41.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCce
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGF 85 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~ 85 (376)
.+.+-|+|.+|||||||+.-|+..|..+|++|+++--+....++..||.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~~~~D~~Gk 50 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHDFDLDKPGK 50 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCCCCCCCCCC
Confidence 3578899999999999999999999999999999877666555555554
No 106
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=97.28 E-value=0.00042 Score=66.19 Aligned_cols=41 Identities=27% Similarity=0.223 Sum_probs=37.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
+|.|+|--|+||||+|-.|+-.|.+.|++|.++|+||+.+.
T Consensus 3 ~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~ 43 (274)
T PRK13235 3 KVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADS 43 (274)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccc
Confidence 56777766999999999999999999999999999999764
No 107
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.28 E-value=0.00036 Score=71.10 Aligned_cols=58 Identities=22% Similarity=0.219 Sum_probs=43.8
Q ss_pred hHHHHHHHhhc----cC--CCCCCCEEEEEcCCCCcHHHHHHHHHHHHH--HcCCcEEEEcCCCCC
Q 017141 20 EWSDAADSIAY----DS--NTSPPPIAFICGAKNCGKTTFSRHLVNVLL--QRYKKVAYLDTDVGQ 77 (376)
Q Consensus 20 ~W~~~~~~i~~----~~--~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll--~~~~~v~~lDlD~GQ 77 (376)
.|..+.+.+.. .. ....+.+++++|+.|+||||++..|+.++. +.+.+|+++|+|+.+
T Consensus 198 ~~~~~~~~L~~~l~~~~~~~~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 198 AWRYLLELLANMIPVRVEDILKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred HHHHHHHHHHHHhCccccccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 56666665532 00 112356899999999999999999999886 567899999999864
No 108
>PRK03839 putative kinase; Provisional
Probab=97.25 E-value=0.00027 Score=63.04 Aligned_cols=31 Identities=39% Similarity=0.510 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+|+|+|+.||||||+++.|++.+ ...++|+|
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~-----~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL-----GYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEehh
Confidence 69999999999999999999987 45677776
No 109
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.00039 Score=70.33 Aligned_cols=42 Identities=29% Similarity=0.293 Sum_probs=36.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH-HHcCCcEEEEcCCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL-LQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l-l~~~~~v~~lDlD~GQ~ 78 (376)
+.+++|+|+.||||||++..|+.++ ++.|.+|.++++|+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 4579999999999999999999765 67889999999998654
No 110
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.24 E-value=0.00048 Score=63.34 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=41.7
Q ss_pred HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 24 ~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
.+|.+...+ -..+..++|.|++|+||||||..++..+...+.+|+|+|.|-.
T Consensus 7 ~LD~~l~GG-i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 7 GLDELLGGG-VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred HHHHHhcCC-ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 455554322 2347789999999999999999999999999999999997643
No 111
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.24 E-value=0.00036 Score=65.78 Aligned_cols=36 Identities=33% Similarity=0.513 Sum_probs=32.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
|+++|..||||||+++.|+.++-..+.++.+++.|.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~ 37 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL 37 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence 789999999999999999999877788888887774
No 112
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=97.24 E-value=0.00051 Score=67.60 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=41.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
++.++|+|+|-.|+||||++..|+..+.++|++|.++|+|+.++.
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~ 73 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDT 73 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccc
Confidence 456789999999999999999999999999999999999999865
No 113
>PRK13949 shikimate kinase; Provisional
Probab=97.23 E-value=0.00027 Score=62.93 Aligned_cols=31 Identities=32% Similarity=0.580 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+|+|+|+.||||||++|.|++.+ ..-++|+|
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l-----~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL-----GLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCCeeccc
Confidence 69999999999999999999987 45688887
No 114
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.22 E-value=0.00039 Score=64.57 Aligned_cols=35 Identities=31% Similarity=0.364 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHH--cCCcEEEEcCC
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQ--RYKKVAYLDTD 74 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~--~~~~v~~lDlD 74 (376)
|.|+|+.|||||||++.|++.+-. .+.++.++.+|
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D 38 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTD 38 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecC
Confidence 679999999999999999998753 34456666655
No 115
>PRK15453 phosphoribulokinase; Provisional
Probab=97.21 E-value=0.00051 Score=65.96 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=34.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.++.|.|+|.+||||||+++.|+..+-+.+.++.+++.|-
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~ 43 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDS 43 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence 4789999999999999999999987766666788998884
No 116
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.21 E-value=0.00054 Score=63.33 Aligned_cols=40 Identities=30% Similarity=0.314 Sum_probs=38.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
+++.|..|+||||++..|+-++.+.|+++.++|+|+.++.
T Consensus 2 ~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~~ 41 (217)
T cd02035 2 IFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNL 41 (217)
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCccc
Confidence 6889999999999999999999999999999999999974
No 117
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.21 E-value=0.00061 Score=61.06 Aligned_cols=40 Identities=25% Similarity=0.313 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.+..+.++|.+|+||||+++.|...+...+..+.++|.|.
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~ 56 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN 56 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH
Confidence 4789999999999999999999999877777788888764
No 118
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.21 E-value=0.00044 Score=57.51 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017141 40 AFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~l 61 (376)
|++.|++|+||||+++.+++++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999999997
No 119
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.20 E-value=0.00061 Score=63.00 Aligned_cols=50 Identities=28% Similarity=0.313 Sum_probs=41.6
Q ss_pred HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 24 ~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
-+|.+..++ -..+..++|.|+.|+||||||..++..+++.+.+|+|+|++
T Consensus 11 ~lD~~l~GG-i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 11 MLDELLGGG-FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred HHHHHhcCC-CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 455555333 23477999999999999999999999999999999999998
No 120
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.19 E-value=0.00039 Score=62.97 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKK 67 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~ 67 (376)
.|.|+|+.||||||||+.|...|-+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 48899999999999999999998665544
No 121
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=97.19 E-value=0.00059 Score=66.24 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=37.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
+|.|.|--|+||||.+-.|+-.|.++|++|.++|+||+.+.
T Consensus 2 vIav~gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~ 42 (296)
T TIGR02016 2 IIAIYGKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDS 42 (296)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCc
Confidence 56677888999999999999999999999999999998764
No 122
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.00097 Score=69.23 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=46.1
Q ss_pred ChhHHHHHHHhhcc------CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCCCCC
Q 017141 18 PREWSDAADSIAYD------SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTDVGQ 77 (376)
Q Consensus 18 p~~W~~~~~~i~~~------~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD~GQ 77 (376)
.+.|..+.+.|... .....+.+|+|+|+.|+||||++..|+.++... +.+|.++++|...
T Consensus 325 ~~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 325 HRGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred hhHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 45687777766431 111246899999999999999999999988765 4689999999753
No 123
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=97.17 E-value=0.001 Score=66.94 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=44.4
Q ss_pred ccCCh--hHHHHHHHhhccCCCCCCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcC-CCCCCC
Q 017141 15 IYIPR--EWSDAADSIAYDSNTSPPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDT-DVGQPE 79 (376)
Q Consensus 15 ~~ip~--~W~~~~~~i~~~~~~~~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDl-D~GQ~~ 79 (376)
+.+.+ +|.+.+.....-....+..+|.|+..| |+||||.+-.|+-+|...|++|++||+ || |+.
T Consensus 82 ytl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~Dp-Q~n 149 (387)
T PHA02519 82 YTIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDP-QGT 149 (387)
T ss_pred EcHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCC-CCC
Confidence 44444 466655432110011123567788887 899999999999999999999999997 77 544
No 124
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.17 E-value=0.00041 Score=60.79 Aligned_cols=34 Identities=32% Similarity=0.487 Sum_probs=29.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
++..|+++|+.||||||+++.|+..+ ...++|.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l-----~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL-----GYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh-----CCCEEECh
Confidence 46789999999999999999999997 45567776
No 125
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.17 E-value=0.00097 Score=61.73 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=35.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
..-++++|++|+|||+|++.+++.+.+.+..+.+++++-
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 567999999999999999999999999999999998854
No 126
>COG4240 Predicted kinase [General function prediction only]
Probab=97.17 E-value=0.00081 Score=62.32 Aligned_cols=55 Identities=27% Similarity=0.269 Sum_probs=42.9
Q ss_pred hHHHHHHHhhcc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcC-CcEEEEcCC
Q 017141 20 EWSDAADSIAYD-SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRY-KKVAYLDTD 74 (376)
Q Consensus 20 ~W~~~~~~i~~~-~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~-~~v~~lDlD 74 (376)
-|...+++|+.- ..+..+..+-|+||.||||||++-.|.+.|.++| ++++.+.+|
T Consensus 32 l~Lpll~Kiap~~qe~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLD 88 (300)
T COG4240 32 LHLPLLAKIAPWAQERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLD 88 (300)
T ss_pred HHHHHHHhhhhhhhhcCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehh
Confidence 356666665421 1234477999999999999999999999999988 688888776
No 127
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=97.17 E-value=0.00064 Score=64.88 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=36.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~GQ~~ 79 (376)
.+|.|+|--|+||||++..|+..|.+ .|++|+++|+||+-+.
T Consensus 3 ~vIav~~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~ 45 (275)
T PRK13233 3 RKIAIYGKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADS 45 (275)
T ss_pred eEEEEEcCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcCh
Confidence 46777776699999999999999997 5999999999999754
No 128
>PRK06547 hypothetical protein; Provisional
Probab=97.14 E-value=0.00052 Score=61.39 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
....|+|.|+.||||||+++.|++.+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999873
No 129
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=97.14 E-value=0.0007 Score=63.76 Aligned_cols=41 Identities=27% Similarity=0.271 Sum_probs=38.1
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
++|.|+|.| |+||||++.-|+-.|.+.|++|..||+||-.-
T Consensus 2 ~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~ 43 (243)
T PF06564_consen 2 KVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQNL 43 (243)
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHH
Confidence 589999999 89999999999999999999999999998654
No 130
>PRK14530 adenylate kinase; Provisional
Probab=97.13 E-value=0.0005 Score=63.33 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+++|+|+|++||||||+++.|+.++
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999999876
No 131
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.13 E-value=0.00084 Score=70.85 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=47.4
Q ss_pred CCCCCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEEEcCCCC
Q 017141 10 NPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTDVG 76 (376)
Q Consensus 10 ~~~~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~G 76 (376)
.+..-+.-|+-|+.+.+.-. .+...+..|+++|..||||||++|.|+.++-. .+..+.++|.|.-
T Consensus 367 ~pP~~f~rpeV~~iL~~~~~--~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 367 EIPEWFSFPEVVAELRRTYP--PRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred CCChhhcHHHHHHHHHHHhc--cccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 34444555666774443332 23345779999999999999999999999876 7778999999943
No 132
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.08 E-value=0.00071 Score=64.51 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=33.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
|.|+|++||||||+++.|...+-+.+.++++++.|--
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~y 38 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSF 38 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccc
Confidence 7899999999999999999998777888999999843
No 133
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.07 E-value=0.0009 Score=62.72 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=35.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
++.++++||.|+|||+|++.++|++.+.+.++.|+.+|-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 468999999999999999999999998899999998863
No 134
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.06 E-value=0.0014 Score=63.00 Aligned_cols=56 Identities=25% Similarity=0.259 Sum_probs=46.3
Q ss_pred HHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 22 SDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 22 ~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.+++..+.. .+....+|=|.|.+|+|||||.--|...+.+.|.+|+++-.||..+-
T Consensus 38 ~~ll~~l~p--~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~ 93 (323)
T COG1703 38 RELLRALYP--RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPF 93 (323)
T ss_pred HHHHHHHhh--cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCC
Confidence 344555542 23457899999999999999999999999999999999999998764
No 135
>PRK00625 shikimate kinase; Provisional
Probab=97.06 E-value=0.00052 Score=61.45 Aligned_cols=31 Identities=39% Similarity=0.830 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.|+++|..||||||+++.|++++ ..-++|+|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l-----~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL-----SLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCCEEEhh
Confidence 58999999999999999999987 45678887
No 136
>PRK08233 hypothetical protein; Provisional
Probab=97.06 E-value=0.00066 Score=60.13 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=28.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|.|.|++||||||||+.|+..+- ...+..+|.+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~ 38 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRY 38 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCE
Confidence 46899999999999999999998762 2356666665
No 137
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.06 E-value=0.00052 Score=56.32 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLL 62 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll 62 (376)
||+|+|++|||||||.+.|++.-.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 699999999999999999987653
No 138
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.06 E-value=0.00087 Score=59.62 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=34.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
++|.|++|+|||+|+..++...++.|.+|.|+.++-..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~ 39 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESP 39 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCH
Confidence 79999999999999999999999999999999987543
No 139
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=97.04 E-value=0.0011 Score=64.38 Aligned_cols=42 Identities=19% Similarity=0.208 Sum_probs=37.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.+|.|.|--|+||||.+..|+-.|.+.|++|+++|+||+.+.
T Consensus 5 ~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~ 46 (295)
T PRK13234 5 RQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADS 46 (295)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccccccc
Confidence 456666777999999999999999999999999999998765
No 140
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.00086 Score=67.46 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=36.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHH----cCCcEEEEcCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQ----RYKKVAYLDTDVGQ 77 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~----~~~~v~~lDlD~GQ 77 (376)
+..|+++|+.|+||||.+.-|++++.. .+.+|.++++|+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 568999999999999999999998863 47899999999753
No 141
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=97.04 E-value=0.00045 Score=65.50 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=35.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
.+|.|.|--|+||||+|..|+-.|.+.| +|+++|+||+-+
T Consensus 3 ~~iav~~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq~~ 42 (264)
T PRK13231 3 KKIAIYGKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPKAD 42 (264)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCCC-EEEEEeEccCcc
Confidence 3677777669999999999999999999 999999999854
No 142
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.0025 Score=58.38 Aligned_cols=109 Identities=23% Similarity=0.330 Sum_probs=70.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSS 117 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~sp 117 (376)
|-|++.|.+|||||||++-|+.-|-.+++.|+.+.-|-.-. ...++- + |-. .
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~----------i~~DEs---l--pi~----k--------- 53 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRG----------ILWDES---L--PIL----K--------- 53 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhh----------eecccc---c--chH----H---------
Confidence 46899999999999999999999988888887766652111 011110 0 000 0
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccccHHHHHHHHHHhCCCEEEEEec
Q 017141 118 KRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINI 188 (376)
Q Consensus 118 ~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~G~~ll~~~i~~~~p~~Vv~l~~ 188 (376)
+.--+.+...+.++++.. ....-+|+|.--+++|+-++|..+.-+.-.+-.||++..
T Consensus 54 e~yres~~ks~~rlldSa--------------lkn~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~ 110 (261)
T COG4088 54 EVYRESFLKSVERLLDSA--------------LKNYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRT 110 (261)
T ss_pred HHHHHHHHHHHHHHHHHH--------------hcceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 001123333344443322 134568999999999999999988877777766777654
No 143
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.00055 Score=61.56 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|+|+|++||||||+|+.|++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999983
No 144
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.02 E-value=0.00062 Score=58.68 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
++++|+.||||||+++.|.+.+ ...++|.|.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~-----~~~~i~~D~ 32 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL-----GAPFIDGDD 32 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc-----CCEEEeCcc
Confidence 7899999999999999999874 345677764
No 145
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.01 E-value=0.00053 Score=60.05 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=25.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
|+++|+.||||||+++.|.+.+ ...++|.|-
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l-----~~~~v~~D~ 31 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL-----GAKFIEGDD 31 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc-----CCeEEeCcc
Confidence 4789999999999999999986 245677764
No 146
>PRK09183 transposase/IS protein; Provisional
Probab=97.01 E-value=0.0014 Score=62.33 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
.+..++++|++|+|||+|+..|++.+...|++|.|+++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~ 138 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTA 138 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence 36689999999999999999999999999999999873
No 147
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.01 E-value=0.0012 Score=61.63 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=35.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
.+..++|.|+.|+||||||..++..+++.+.++.|++.+-.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~ 63 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT 63 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 46799999999999999987777778888999999987644
No 148
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.99 E-value=0.001 Score=68.56 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH-HcC-CcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLL-QRY-KKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll-~~~-~~v~~lDlD~ 75 (376)
.+.+++++|++|+||||++..|+.++. +.| .+|.++++|+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 367999999999999999999999985 455 4899999996
No 149
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.99 E-value=0.00076 Score=60.13 Aligned_cols=34 Identities=29% Similarity=0.554 Sum_probs=29.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
..+|+++|+.|+||||+++.|++.+ ..-++|+|-
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l-----~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc-----CCcEEECCc
Confidence 3579999999999999999999986 455788884
No 150
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.98 E-value=0.00088 Score=66.19 Aligned_cols=37 Identities=32% Similarity=0.426 Sum_probs=33.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEcCCCC
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTDVG 76 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~lDlD~G 76 (376)
+.++|..|+||||+++.|.+++. ..|++|+++|.|--
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~ 39 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDI 39 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccc
Confidence 47899999999999999999997 58999999999943
No 151
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.96 E-value=0.0031 Score=56.77 Aligned_cols=50 Identities=14% Similarity=0.086 Sum_probs=37.7
Q ss_pred cCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141 16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (376)
Q Consensus 16 ~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l 71 (376)
.+++++.+.+..... .+..++|+|+.||||||+.+.|+..+- ...+++.+
T Consensus 9 ~~~~~~~~~l~~~v~-----~g~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~i 58 (186)
T cd01130 9 TFSPLQAAYLWLAVE-----ARKNILISGGTGSGKTTLLNALLAFIP-PDERIITI 58 (186)
T ss_pred CCCHHHHHHHHHHHh-----CCCEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEE
Confidence 467788888876543 256899999999999999999998753 33444444
No 152
>PRK11670 antiporter inner membrane protein; Provisional
Probab=96.95 E-value=0.0014 Score=65.60 Aligned_cols=42 Identities=29% Similarity=0.356 Sum_probs=37.3
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.+|.|..+| |+||||++-.|+-.|.+.|++|.++|+|+.-+.
T Consensus 108 ~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps 150 (369)
T PRK11670 108 NIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPS 150 (369)
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence 466676666 899999999999999999999999999999875
No 153
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.95 E-value=0.0017 Score=61.70 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=41.6
Q ss_pred cCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 16 ~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.+++.|.+.+..... .+..|+|+|+.||||||+.+.|+.++-....++..++ |+..-.
T Consensus 111 ~~~~~~~~~l~~~v~-----~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE-d~~E~~ 168 (270)
T PF00437_consen 111 SIPEEIAEFLRSAVR-----GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE-DPPELR 168 (270)
T ss_dssp HCHHHHHHHHHHCHH-----TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE-SSS-S-
T ss_pred hhHHHHHHHHhhccc-----cceEEEEECCCccccchHHHHHhhhccccccceEEec-ccccee
Confidence 345667777765432 1468999999999999999999998765547788877 544333
No 154
>PRK05642 DNA replication initiation factor; Validated
Probab=96.94 E-value=0.0016 Score=61.05 Aligned_cols=37 Identities=16% Similarity=0.310 Sum_probs=34.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
..++++|+.|+|||.|++.++|++.+++.+|.|++++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~ 82 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLA 82 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHH
Confidence 5688999999999999999999999888999998875
No 155
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.94 E-value=0.0014 Score=61.07 Aligned_cols=39 Identities=31% Similarity=0.439 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..++|.|+.|+|||||+..++...++.+.+|+|++++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e 62 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTE 62 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcC
Confidence 477999999999999999999998888899999999996
No 156
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.94 E-value=0.0013 Score=62.67 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=36.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..++|.|++|+||||||..++-..+++|.+++|++++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 467999999999999999999988888889999999997
No 157
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=96.93 E-value=0.0089 Score=57.08 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=33.8
Q ss_pred CEEEEE-cCCCCcHHHHHHHHHHHHHHcCC-cEEEEcCCCCCCCC
Q 017141 38 PIAFIC-GAKNCGKTTFSRHLVNVLLQRYK-KVAYLDTDVGQPEF 80 (376)
Q Consensus 38 ~~vlV~-G~~~sGKSTl~r~L~N~ll~~~~-~v~~lDlD~GQ~~~ 80 (376)
..|-|. |--|+||||++-.|...+++.+. +|+++|+|+|-+.+
T Consensus 3 ~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL 47 (262)
T COG0455 3 KVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNL 47 (262)
T ss_pred EEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcH
Confidence 356666 55589999999999777776554 55999999998874
No 158
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.92 E-value=0.0013 Score=61.20 Aligned_cols=39 Identities=28% Similarity=0.298 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE-EcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY-LDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~-lDlD 74 (376)
.+..|.|+|+.|||||||++.|++.+-..+..+.+ +.+|
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D 71 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMD 71 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecc
Confidence 46799999999999999999999998776666655 5555
No 159
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=96.92 E-value=0.0015 Score=56.36 Aligned_cols=41 Identities=32% Similarity=0.421 Sum_probs=34.1
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 39 IAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 39 ~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.|.|+|++ |+||||++..|+..+.+.+++|+++|+|...+.
T Consensus 2 ~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~ 43 (157)
T PF13614_consen 2 VIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPS 43 (157)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-H
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCC
Confidence 58899966 999999999999999999999999999998874
No 160
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.92 E-value=0.003 Score=61.42 Aligned_cols=51 Identities=22% Similarity=0.412 Sum_probs=36.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCCCCCceEEE
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTDVGQPEFTAPGFLSL 88 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD~GQ~~~~~PG~vSl 88 (376)
+..++|+|+.|||||||++.|++++-.. ..++..++ |+..-.+..|..+.+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE-d~~El~~~~~~~v~~ 184 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE-DTRELQCAAPNVVQL 184 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC-CchhhcCCCCCEEEE
Confidence 4579999999999999999999987653 56677776 544433333444444
No 161
>PRK06893 DNA replication initiation factor; Validated
Probab=96.91 E-value=0.0025 Score=59.43 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+.++++|++|+|||+|++.++|.+.+++.++.|++++
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 56789999999999999999999999999999999885
No 162
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=96.90 E-value=0.0015 Score=62.04 Aligned_cols=39 Identities=33% Similarity=0.353 Sum_probs=36.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
.+++.|..|+||||.+..|+..+.+.|++|.++|+|+..
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~~ 40 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPAH 40 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCcc
Confidence 578889999999999999999999999999999999964
No 163
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.90 E-value=0.002 Score=55.23 Aligned_cols=41 Identities=32% Similarity=0.433 Sum_probs=35.2
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCC
Q 017141 41 FICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFT 81 (376)
Q Consensus 41 lV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~ 81 (376)
+.-|..|+||||++..|+-++..+|.++.++|+|++++.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~ 44 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD 44 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC
Confidence 44556699999999999999999999999999999776543
No 164
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.89 E-value=0.0026 Score=62.15 Aligned_cols=84 Identities=13% Similarity=0.088 Sum_probs=50.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEeccc-CCCCCCCCCCCCCceeEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDT-LTPDLTIPCLKTPKRCYFFGDV 115 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~-~~~~~~~~~~~~p~~~~f~G~~ 115 (376)
++.|+|+||+||||||++..|+..+ ...++++|--|--...+ +.+. |.++- . .-...||++..
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~-----~~~iis~Ds~Qvy~~l~------i~Takp~~~E----~-~gv~hhlid~~ 67 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRL-----NGEIISADSMQVYRGMD------IGTAKPTAEE----R-AGVPHHLIDIL 67 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhC-----CCcEEeccccceeeccc------ccCCCCCHHH----H-cCccEEeeccc
Confidence 4689999999999999999998875 34567777554321111 1111 11110 0 11235899988
Q ss_pred CCCC--ChHHHHHHHHHHHHHHH
Q 017141 116 SSKR--DPTAYLKYITTLYDYYR 136 (376)
Q Consensus 116 sp~~--~~~~y~~~v~~L~~~~~ 136 (376)
+|.+ +...|.+.+.+.++...
T Consensus 68 ~~~~~~s~~~f~~~a~~~i~~i~ 90 (307)
T PRK00091 68 DPTESYSVADFQRDALAAIADIL 90 (307)
T ss_pred ChhhcccHHHHHHHHHHHHHHHH
Confidence 8865 35566666665555443
No 165
>PLN02748 tRNA dimethylallyltransferase
Probab=96.88 E-value=0.0039 Score=64.11 Aligned_cols=99 Identities=15% Similarity=0.205 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEeccc-CCCCCCCCCCCCCceeEEcC
Q 017141 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDT-LTPDLTIPCLKTPKRCYFFG 113 (376)
Q Consensus 35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~-~~~~~~~~~~~~p~~~~f~G 113 (376)
..++.|+|+|++|||||||+..|+..+ ..-++++|--|===+. -+.+. |... . .-.- ..|++|
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~-----~~eii~~DsmQVYrgL------dIgTaKpt~e-E--~~~V--pHHLid 83 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHF-----PVEIINADSMQVYSGL------DVLTNKVPLH-E--QKGV--PHHLLG 83 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhc-----CeeEEcCchheeeCCc------chhcCCCCHH-H--HcCC--CCeeEe
Confidence 346789999999999999999998775 4568888854321000 01111 1000 0 0011 248899
Q ss_pred CCCCCC--ChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCC
Q 017141 114 DVSSKR--DPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPG 161 (376)
Q Consensus 114 ~~sp~~--~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~G 161 (376)
..+|.. +...|...+.++++.+..+ ...|+||=-.|
T Consensus 84 ~v~p~e~ysv~~F~~~A~~~I~~I~~r------------gk~PIlVGGTg 121 (468)
T PLN02748 84 VISPSVEFTAKDFRDHAVPLIEEILSR------------NGLPVIVGGTN 121 (468)
T ss_pred ecCCCCcCcHHHHHHHHHHHHHHHHhc------------CCCeEEEcChH
Confidence 988865 4556776666666655544 46788774443
No 166
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.88 E-value=0.00094 Score=59.85 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+|+|+|++||||||+|+.|+..+ ...++++|
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~-----~~~~i~~~ 31 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY-----GLPHISTG 31 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc-----CCeEEECc
Confidence 58999999999999999999874 45566653
No 167
>PRK13947 shikimate kinase; Provisional
Probab=96.87 E-value=0.001 Score=58.53 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.|+++|+.||||||+++.|++.+ ..-|+|.|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l-----g~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL-----SFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh-----CCCEEECch
Confidence 59999999999999999999987 445788885
No 168
>PRK13236 nitrogenase reductase; Reviewed
Probab=96.87 E-value=0.0017 Score=62.92 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=37.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.++-|.|--|+||||++-.|+--|.++|++|.++|+|++.+.
T Consensus 7 ~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~ 48 (296)
T PRK13236 7 RQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADS 48 (296)
T ss_pred eEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCc
Confidence 355566655999999999999999999999999999999766
No 169
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.86 E-value=0.00097 Score=55.18 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017141 40 AFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~l 61 (376)
|+|.|..||||||+++.|..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997
No 170
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=96.86 E-value=0.002 Score=60.18 Aligned_cols=35 Identities=29% Similarity=0.301 Sum_probs=32.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
+.+-|+|.+||||||++..|+.+|.++|.+|+++.
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 46889999999999999999999988999999985
No 171
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.86 E-value=0.0022 Score=61.23 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=46.3
Q ss_pred CccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEE
Q 017141 14 AIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSL 88 (376)
Q Consensus 14 ~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl 88 (376)
.+..+++..+.+..+.... ...|+|+|+.||||||+.+.|++++.+.+.+++.++ || .|+..||....
T Consensus 61 ~lg~~~~~~~~l~~~~~~~----~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiE-dp--~E~~~~~~~q~ 128 (264)
T cd01129 61 KLGLKPENLEIFRKLLEKP----HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVE-DP--VEYQIPGINQV 128 (264)
T ss_pred HcCCCHHHHHHHHHHHhcC----CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEEC-CC--ceecCCCceEE
Confidence 3455666666665554322 347999999999999999999999866566677776 33 35555664433
No 172
>PLN02840 tRNA dimethylallyltransferase
Probab=96.84 E-value=0.0039 Score=63.18 Aligned_cols=100 Identities=12% Similarity=0.127 Sum_probs=60.2
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCC
Q 017141 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGD 114 (376)
Q Consensus 35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~ 114 (376)
..++.|+|+|+.||||||++..|+..+ ..-++.+|-.|--...+ |.-. +|.+. . . .-...|+++.
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~La~~~-----~~~iis~Ds~qvYr~~~--IgTa---Kpt~e-E---~-~~V~Hhlidi 83 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALELAKRL-----NGEIISADSVQVYRGLD--VGSA---KPSLS-E---R-KEVPHHLIDI 83 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHC-----CCCeEeccccceeccee--EEcC---CCCHH-H---H-cCCCeEeEee
Confidence 346689999999999999999998876 22367777655432222 1111 11100 0 0 0113589999
Q ss_pred CCCCCC--hHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCC
Q 017141 115 VSSKRD--PTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPG 161 (376)
Q Consensus 115 ~sp~~~--~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~G 161 (376)
.+|.+. ...|...+.++++.+..+ ...|+||=-.|
T Consensus 84 l~p~e~ySv~~F~~~A~~~I~~i~~r------------gkiPIvVGGTG 120 (421)
T PLN02840 84 LHPSDDYSVGAFFDDARRATQDILNR------------GRVPIVAGGTG 120 (421)
T ss_pred cCCCCceeHHHHHHHHHHHHHHHHhc------------CCCEEEEcCcc
Confidence 888763 456666655555544433 56788876555
No 173
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.83 E-value=0.0011 Score=59.07 Aligned_cols=30 Identities=23% Similarity=0.411 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
+|+|+|++||||||+|+.|+.++ ...+++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~-----~~~~is~ 30 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF-----GFTHLSA 30 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc-----CCeEEEC
Confidence 48999999999999999999876 3455554
No 174
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.83 E-value=0.0019 Score=57.74 Aligned_cols=34 Identities=26% Similarity=0.244 Sum_probs=29.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
.|.|.|+.||||||+++.|++++-..|.++..+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~ 35 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 5889999999999999999999987788776654
No 175
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.82 E-value=0.0019 Score=64.57 Aligned_cols=41 Identities=32% Similarity=0.285 Sum_probs=35.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-C-CcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-Y-KKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~-~~v~~lDlD~G 76 (376)
.+..++++||+|+||||++..|+.++..+ | .+|.++.+|.-
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 46799999999999999999999997644 5 58999999865
No 176
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.81 E-value=0.0013 Score=60.20 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..|.|+|+.|||||||++.|++.+-. ..+.++..|
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D 41 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQD 41 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccc
Confidence 3678999999999999999999987522 234455444
No 177
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.81 E-value=0.0021 Score=59.41 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~ 75 (376)
.+..++|.|++|+|||+|+..++-..+++ |.+|+|+.++-
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 46799999999999999998877666677 99999988863
No 178
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.81 E-value=0.0026 Score=57.19 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=31.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
.+..+++.|++|+|||.|+..+++.++++|.+|.|++.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 35679999999999999999999999999999999865
No 179
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.80 E-value=0.0018 Score=55.43 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=33.1
Q ss_pred ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 18 p~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+++..++.+.++.. ..++..|++.|+.|+|||||+|.++..+
T Consensus 5 ~~~t~~l~~~l~~~--l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 5 EKAMDKFGKAFAKP--LDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHHh--CCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45666777777632 2346799999999999999999999976
No 180
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.80 E-value=0.002 Score=57.89 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
+..|.|.|+.||||||+++.|++.+-..|.++.++.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 38 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTR 38 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 567999999999999999999999887787777654
No 181
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.80 E-value=0.0018 Score=57.06 Aligned_cols=32 Identities=31% Similarity=0.359 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcE
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKV 68 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v 68 (376)
..+|.|.|++|+||||++.-++++|.+.|++|
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 57999999999999999999999999887665
No 182
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.79 E-value=0.0023 Score=58.27 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=32.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcC-CcEEEEcCCCCCCCCCCCceEE
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRY-KKVAYLDTDVGQPEFTAPGFLS 87 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~-~~v~~lDlD~GQ~~~~~PG~vS 87 (376)
.|+|+|+.||||||+++.|++++.... .++..++- +- |+..++..+
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~-~~--E~~~~~~~~ 49 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED-PI--EFVHESKRS 49 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC-Cc--cccccCccc
Confidence 689999999999999999999987543 34555443 32 444555433
No 183
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.79 E-value=0.0022 Score=59.66 Aligned_cols=41 Identities=20% Similarity=0.418 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~G 76 (376)
++..++|+|++|+|||||+..++..++.. +.+|+|+.++-.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~ 53 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS 53 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence 46799999999999999999988877776 999999988753
No 184
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.78 E-value=0.0035 Score=62.49 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=35.9
Q ss_pred CCCCCCCCCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141 6 PQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR 64 (376)
Q Consensus 6 ~~~~~~~~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~ 64 (376)
|........+.+|+.+.+.+. .++..|+|+|+.||||||+.+.|++++...
T Consensus 111 ~~~~~~l~~l~~~~~~~~~~~--------~~~glilI~GpTGSGKTTtL~aLl~~i~~~ 161 (358)
T TIGR02524 111 PAEPPKLSKLDLPAAIIDAIA--------PQEGIVFITGATGSGKSTLLAAIIRELAEA 161 (358)
T ss_pred CCCCCCHHHcCCCHHHHHHHh--------ccCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 334444455667765544332 125689999999999999999999998653
No 185
>PRK06526 transposase; Provisional
Probab=96.77 E-value=0.0015 Score=62.17 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=32.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l 71 (376)
+..++++|++|+|||+++..|++.+.+.|++|.|.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~ 132 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA 132 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh
Confidence 56899999999999999999999999999998883
No 186
>PF13479 AAA_24: AAA domain
Probab=96.77 E-value=0.0014 Score=60.52 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=30.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
+.+++|.|+.|+|||||++.+ .+++|||+|-|.
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~ 35 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGS 35 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCc
Confidence 578999999999999999988 789999999884
No 187
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.77 E-value=0.0031 Score=62.49 Aligned_cols=49 Identities=16% Similarity=0.258 Sum_probs=34.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcC-CcEEEEcCCCCCCCCCCCceEEE
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRY-KKVAYLDTDVGQPEFTAPGFLSL 88 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~-~~v~~lDlD~GQ~~~~~PG~vSl 88 (376)
+..|+|+|+.||||||+.+.|++++.+.. .++..+ -|| .|+..|+..++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti-Edp--~E~~~~~~~~~ 171 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI-EDP--IEYVHRNKRSL 171 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE-cCC--hhhhccCccce
Confidence 46799999999999999999999876443 344444 444 34445554443
No 188
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.77 E-value=0.0023 Score=59.21 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=35.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..++|.|++|+|||||+..++...++++.++.|+.++
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 467999999999999999999988888889999999885
No 189
>PHA00729 NTP-binding motif containing protein
Probab=96.77 E-value=0.0016 Score=60.73 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLL 62 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll 62 (376)
-..|+|.|++|+||||||..|++.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999875
No 190
>PRK13948 shikimate kinase; Provisional
Probab=96.76 E-value=0.0015 Score=58.98 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..|+++|..||||||++|.|++.+ ...|+|+|
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~l-----g~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRAL-----MLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc-----CCCEEECC
Confidence 35689999999999999999999987 34577999
No 191
>PTZ00301 uridine kinase; Provisional
Probab=96.75 E-value=0.0022 Score=59.17 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=24.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQR 64 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~ 64 (376)
..|.|.|++||||||||+.|++.+.+.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 579999999999999999999988643
No 192
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=96.75 E-value=0.0021 Score=64.31 Aligned_cols=49 Identities=29% Similarity=0.345 Sum_probs=39.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceE
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFL 86 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~v 86 (376)
+..|-|+|.+|||||||+..|+..+-.+ .+|+++.-+...-++..||.-
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~~~~~~~d~~~~d 53 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYKHGCHRFDIDREGKD 53 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEEeCCCCCCCCcccch
Confidence 6789999999999999999999998877 899999865544444444433
No 193
>PRK05973 replicative DNA helicase; Provisional
Probab=96.74 E-value=0.0037 Score=58.80 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=36.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
++..++|.|++|+|||||+..++...++.|.+|+|+.++-.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes 103 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT 103 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 46799999999999999999999888888999999988654
No 194
>PRK14531 adenylate kinase; Provisional
Probab=96.74 E-value=0.0016 Score=58.47 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+|+|+|++||||||+|+.|+.++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999985
No 195
>PRK14532 adenylate kinase; Provisional
Probab=96.72 E-value=0.0015 Score=58.51 Aligned_cols=30 Identities=27% Similarity=0.319 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
+|+++|++||||||+|+.|+.++ ...+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~-----g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER-----GMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCeEEeC
Confidence 58999999999999999998765 4455655
No 196
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.72 E-value=0.0028 Score=58.57 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.+..++|.|++|+|||+||..++...++++.+|.|++++-
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3678999999999999999999998888899999999874
No 197
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.72 E-value=0.0025 Score=62.53 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=36.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..++|.|+.||||||||..++..+.+.+.+|+|+|..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E 92 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 92 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence 467999999999999999999999999999999999885
No 198
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.71 E-value=0.0019 Score=60.45 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=27.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+.+|+|+|++||||||+|+.|+..+ .+.++++|
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~-----g~~~is~g 38 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKE-----NLKHINMG 38 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-----CCcEEECC
Confidence 5679999999999999999998875 45566655
No 199
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.71 E-value=0.0014 Score=60.46 Aligned_cols=37 Identities=27% Similarity=0.294 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
+|-++.||||.|||||||.|.| |.|-.-...-+++|-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRcl-N~LE~~~~G~I~i~g 63 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCL-NGLEEPDSGSITVDG 63 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHH-HCCcCCCCceEEECC
Confidence 4789999999999999999986 555443334455555
No 200
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.70 E-value=0.0036 Score=58.62 Aligned_cols=50 Identities=20% Similarity=0.267 Sum_probs=39.4
Q ss_pred HHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 25 ADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 25 ~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
+|++...+ -.++..++|.|++|+||||||..++...++.|.+++|+.++-
T Consensus 10 LD~~l~GG-~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 10 MDEILHGG-IPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred HHHHhcCC-CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 45544333 235789999999999999999988877778899999998764
No 201
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.70 E-value=0.0046 Score=60.31 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=33.8
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
+|.+.++.... .+..++|+|+.|||||||++.|++.+ ....++..++
T Consensus 132 ~~~~~l~~~v~-----~~~~ili~G~tGsGKTTll~al~~~~-~~~~~iv~ie 178 (308)
T TIGR02788 132 DIKEFLRLAIA-----SRKNIIISGGTGSGKTTFLKSLVDEI-PKDERIITIE 178 (308)
T ss_pred HHHHHHHHHhh-----CCCEEEEECCCCCCHHHHHHHHHccC-CccccEEEEc
Confidence 56666654432 25689999999999999999999875 3334555554
No 202
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.70 E-value=0.0015 Score=58.16 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+.|+|+|+.||||||+|+.|+.++
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999999875
No 203
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.70 E-value=0.002 Score=61.74 Aligned_cols=104 Identities=20% Similarity=0.346 Sum_probs=56.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVSS 117 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~sp 117 (376)
|-|+|||-++|||||+|+.|..++-..+.+|.+++-|--. ++. . . |.+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-------------~~~-----------~---~--y~~~-- 50 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-------------IDR-----------N---D--YADS-- 50 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH--------------TT-----------S---S--S--G--
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-------------cch-----------h---h--hhch--
Confidence 5689999999999999999999998888888888754111 111 0 1 1111
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccccHHHHHHHHHHhCCCEEEEEe
Q 017141 118 KRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKIN 187 (376)
Q Consensus 118 ~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~G~~ll~~~i~~~~p~~Vv~l~ 187 (376)
......... +...+.+.+. +..-+|+|..=+++|+=+++-. +.+..+..++++.-
T Consensus 51 -~~Ek~~R~~---l~s~v~r~ls----------~~~iVI~Dd~nYiKg~RYelyc-lAr~~~~~~c~i~~ 105 (270)
T PF08433_consen 51 -KKEKEARGS---LKSAVERALS----------KDTIVILDDNNYIKGMRYELYC-LARAYGTTFCVIYC 105 (270)
T ss_dssp -GGHHHHHHH---HHHHHHHHHT----------T-SEEEE-S---SHHHHHHHHH-HHHHTT-EEEEEEE
T ss_pred -hhhHHHHHH---HHHHHHHhhc----------cCeEEEEeCCchHHHHHHHHHH-HHHHcCCCEEEEEE
Confidence 111222222 2233333321 3456899999999998888776 77888887765443
No 204
>PF13245 AAA_19: Part of AAA domain
Probab=96.70 E-value=0.0037 Score=48.18 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=27.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHc----CCcEEEE
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQR----YKKVAYL 71 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~----~~~v~~l 71 (376)
.+.++|.|++||||||++..++.+++.. +.+|+++
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~ 48 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVL 48 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 3567789999999998777777777754 5667765
No 205
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.69 E-value=0.0027 Score=56.82 Aligned_cols=41 Identities=27% Similarity=0.429 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH----------cCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ----------RYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~----------~~~~v~~lDlD~G 76 (376)
.+..++|.|+.|+|||||+..++..++. .+.+|+|+++|-.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 3678999999999999999999999885 3456777666533
No 206
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.69 E-value=0.0026 Score=57.45 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=28.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+..|.|.|+.||||||+++.|.+++-..|..+.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 5689999999999999999999998666655444
No 207
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.69 E-value=0.0015 Score=56.25 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.|+|+|+.||||||+++.|+.++ ...++|.|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l-----~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL-----GLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh-----CCCEEEch
Confidence 38999999999999999999987 33466776
No 208
>PF05729 NACHT: NACHT domain
Probab=96.69 E-value=0.0025 Score=54.94 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYK 66 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~ 66 (376)
.++|.|++|+||||+++.++..+.+.+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~ 29 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEP 29 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCc
Confidence 6899999999999999999999987653
No 209
>PRK14527 adenylate kinase; Provisional
Probab=96.68 E-value=0.0018 Score=58.44 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+..|+|+|++||||||+++.|++++
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999998876
No 210
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.66 E-value=0.0039 Score=61.56 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=42.3
Q ss_pred ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC-CCCceEEE
Q 017141 18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF-TAPGFLSL 88 (376)
Q Consensus 18 p~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~-~~PG~vSl 88 (376)
.++|.+.+..... .+..|+|+|+.|||||||.+.|++++ ....++..++ |+..-.+ ..|..+++
T Consensus 146 ~~~~~~~L~~~v~-----~~~nili~G~tgSGKTTll~aL~~~i-p~~~ri~tiE-d~~El~l~~~~n~~~~ 210 (332)
T PRK13900 146 EKKIKEFLEHAVI-----SKKNIIISGGTSTGKTTFTNAALREI-PAIERLITVE-DAREIVLSNHPNRVHL 210 (332)
T ss_pred hHHHHHHHHHHHH-----cCCcEEEECCCCCCHHHHHHHHHhhC-CCCCeEEEec-CCCccccccCCCEEEE
Confidence 3456666664432 24579999999999999999999876 4456777776 4322222 12555655
No 211
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.65 E-value=0.002 Score=56.87 Aligned_cols=33 Identities=39% Similarity=0.663 Sum_probs=27.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.+|+|+|..||||||+++.|++.+ ...|+|.|-
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l-----g~~~~d~D~ 35 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL-----GYRFVDTDQ 35 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-----CCCEEEccH
Confidence 368999999999999999999987 335778873
No 212
>PF12846 AAA_10: AAA-like domain
Probab=96.65 E-value=0.0027 Score=60.34 Aligned_cols=37 Identities=32% Similarity=0.562 Sum_probs=33.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+-++|+|.+|+||||+++.++..+++.|..+.++|-.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3589999999999999999999999999999998443
No 213
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.64 E-value=0.0021 Score=58.55 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=30.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (376)
.+|.|+|+.||||||++++|.+.+ ...++|+|-=.-++
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~-----g~~~i~~D~~~~~~ 39 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQK-----GIPILDADIYAREA 39 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh-----CCeEeeCcHHHHHH
Confidence 379999999999999999999864 45677888544443
No 214
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.61 E-value=0.0035 Score=56.10 Aligned_cols=40 Identities=30% Similarity=0.477 Sum_probs=34.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
|+++|.|--|||||||.+.|+. ....+.+++++-.|.|..
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~ 40 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFGEV 40 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTTST
T ss_pred CEEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccccc
Confidence 6899999999999999999998 677899999999998864
No 215
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.60 E-value=0.0023 Score=53.40 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=27.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHc-----CCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQR-----YKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~-----~~~v~~lDlD 74 (376)
...++|.|++|+||||+++.+++.+... ...++++++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCP 46 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeC
Confidence 4579999999999999999999998754 4455555553
No 216
>PRK08727 hypothetical protein; Validated
Probab=96.59 E-value=0.0025 Score=59.64 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=33.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.-++++|++|+|||+|++.+++.+.+++.++.|+.++
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ 78 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence 4599999999999999999999999999999998753
No 217
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=96.58 E-value=0.0042 Score=63.04 Aligned_cols=37 Identities=27% Similarity=0.281 Sum_probs=33.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+++-|+|.+|||||||+..|+..|-++|.+|++|--|
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~ 38 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHS 38 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 4688999999999999999999999999999996543
No 218
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.58 E-value=0.0016 Score=59.81 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|+|+|++||||||+|+.|+.++
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998764
No 219
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.58 E-value=0.0028 Score=56.75 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..+.|+|+.|+||||+++.|+..+ ++.++|.|
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l-----~~~~i~gd 35 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALF-----SAKFIDGD 35 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc-----CCEEECCc
Confidence 5689999999999999999999975 23467776
No 220
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.57 E-value=0.0036 Score=53.14 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
||+.|++|+|||++++.++..+ +.++..+.+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~ 35 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL---GRPVIRINCSSD 35 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTT
T ss_pred EEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccc
Confidence 7999999999999999999998 566666666543
No 221
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.57 E-value=0.0036 Score=59.33 Aligned_cols=54 Identities=22% Similarity=0.286 Sum_probs=43.1
Q ss_pred HHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 25 ADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 25 ~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
+|.+...+ -..+..++|.|++|||||+|+..++...++.|.+|.|+-+|-...+
T Consensus 12 lD~~l~GG-~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~ 65 (260)
T COG0467 12 LDEILGGG-LPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEE 65 (260)
T ss_pred hHHHhcCC-CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHH
Confidence 44444322 2347899999999999999999999999999999999998865443
No 222
>PRK06851 hypothetical protein; Provisional
Probab=96.56 E-value=0.022 Score=56.90 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=50.2
Q ss_pred CCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC--CCCC
Q 017141 13 PAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT--DVGQ 77 (376)
Q Consensus 13 ~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl--D~GQ 77 (376)
.+-..|+.+...++.+..+- ..+++|.|+.|+||||+++.++..+.++|..|.+.-| ||..
T Consensus 194 ~ga~Tp~G~~s~~~~l~~~~----~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~dPds 256 (367)
T PRK06851 194 LGAITPKGAVDFVPSLTEGV----KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFDPDS 256 (367)
T ss_pred ccccCCCcHHhhHHhHhccc----ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Confidence 45567888999998887432 4689999999999999999999999999998887665 5543
No 223
>PRK04296 thymidine kinase; Provisional
Probab=96.56 E-value=0.0042 Score=56.27 Aligned_cols=35 Identities=31% Similarity=0.288 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l 71 (376)
+..++++|+.|+||||++..++.++...+.+|+++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 45789999999999999999999999999999998
No 224
>PRK13946 shikimate kinase; Provisional
Probab=96.55 E-value=0.0023 Score=57.58 Aligned_cols=33 Identities=30% Similarity=0.563 Sum_probs=29.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
...|+++|..||||||+++.|++.+ ..-|+|.|
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L-----g~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML-----GLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc-----CCCeECcC
Confidence 4579999999999999999999998 34489999
No 225
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.55 E-value=0.0037 Score=57.89 Aligned_cols=51 Identities=25% Similarity=0.283 Sum_probs=37.0
Q ss_pred HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc------CCcEEEEcCCC
Q 017141 24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR------YKKVAYLDTDV 75 (376)
Q Consensus 24 ~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~------~~~v~~lDlD~ 75 (376)
.+|.+..++ -..+..+.|+|+.|+||||||..++-..+.. +.+|+|+|.+-
T Consensus 7 ~lD~~l~GG-i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 7 ALDELLGGG-IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred hhHhhccCC-CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 345544332 2347899999999999999999997554433 37899999874
No 226
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.54 E-value=0.0022 Score=54.51 Aligned_cols=31 Identities=39% Similarity=0.558 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.|.|+|+.||||||+++.|+..+ ..-++|.|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~-----~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL-----GLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-----CCceeccc
Confidence 37899999999999999999886 45578887
No 227
>PLN02674 adenylate kinase
Probab=96.54 E-value=0.0038 Score=58.92 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=31.7
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
-|..++..+.... ...++|+|+|++||||+|.|+.|+..+
T Consensus 16 ~~~~~~~~~~~~~--~~~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 16 LMTELLRRMKCSS--KPDKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred HHHHHHHHHhhcc--ccCceEEEECCCCCCHHHHHHHHHHHc
Confidence 5677777775433 236899999999999999999998865
No 228
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.54 E-value=0.0027 Score=58.49 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
+|+|+|++||||||+|+.|+.++ ...++++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~-----~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY-----GIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEEC
Confidence 79999999999999999998775 4556553
No 229
>PRK08181 transposase; Validated
Probab=96.53 E-value=0.0027 Score=60.85 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=34.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
+..++++|+.|+|||.|+..+++.+.+.|++|.|+..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 4579999999999999999999999999999999865
No 230
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.53 E-value=0.0023 Score=61.75 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=27.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
..|+++|++||||||+|+.|+.++ ....++|.|-
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~----~~~~~l~~D~ 36 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN----PKAVNVNRDD 36 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC----CCCEEEeccH
Confidence 468899999999999999998875 1456666653
No 231
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.53 E-value=0.0023 Score=58.07 Aligned_cols=23 Identities=43% Similarity=0.613 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.|.|.|+.||||||||+.|+..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 37899999999999999999985
No 232
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.53 E-value=0.004 Score=59.08 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=42.6
Q ss_pred cCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCCC
Q 017141 16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVG 76 (376)
Q Consensus 16 ~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~G 76 (376)
.+|-.|..+= .+.. + -..+..++|.|+.|+|||||+..++..+... |.+|+|+.++..
T Consensus 12 ~~~tg~~~Ld-~~~g-G-~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~ 70 (271)
T cd01122 12 EVWWPFPVLN-KLTK-G-LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP 70 (271)
T ss_pred CCCCCcceee-eeeE-E-EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence 4555554432 2321 2 1246799999999999999999998888776 899999998753
No 233
>PLN02796 D-glycerate 3-kinase
Probab=96.53 E-value=0.0029 Score=62.52 Aligned_cols=39 Identities=33% Similarity=0.489 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..|-|+|+.|||||||++.|.+.+-..+.++..+-+|
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiD 137 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSID 137 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEEC
Confidence 456799999999999999999998875444444444443
No 234
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.52 E-value=0.0026 Score=56.57 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+..|+++|+.||||||++|.|...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999999875
No 235
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.52 E-value=0.0069 Score=60.62 Aligned_cols=39 Identities=23% Similarity=0.312 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcC--CcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRY--KKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~--~~v~~lDlD 74 (376)
.++.++|.|++|+||||+++.+++.+-+.+ ..+++++|.
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~ 94 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ 94 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence 357899999999999999999999987664 456666664
No 236
>PRK06761 hypothetical protein; Provisional
Probab=96.52 E-value=0.003 Score=60.87 Aligned_cols=40 Identities=28% Similarity=0.418 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE-EEcCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA-YLDTDVG 76 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~-~lDlD~G 76 (376)
++.|+|+|++||||||+++.|++++...+..+. +.+.|+.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~ 43 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLD 43 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCC
Confidence 357999999999999999999999876666665 4565654
No 237
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.50 E-value=0.007 Score=59.89 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=37.8
Q ss_pred hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcC------CcEEEEcCC
Q 017141 19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRY------KKVAYLDTD 74 (376)
Q Consensus 19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~------~~v~~lDlD 74 (376)
++.+++...+........++.++|.|++|+|||++++.+++.+.+.. ..++++||.
T Consensus 22 ~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 22 EQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 36666666554211112356899999999999999999999876432 245566653
No 238
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=96.48 E-value=0.004 Score=57.63 Aligned_cols=44 Identities=25% Similarity=0.313 Sum_probs=37.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEcCCCCCCCCCCCc
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTDVGQPEFTAPG 84 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~lDlD~GQ~~~~~PG 84 (376)
..++|.|.+|||||++++.|+..++ +.+.++.++|. .+|+..-.
T Consensus 24 ~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~---~GEY~~~~ 68 (229)
T PF01935_consen 24 RHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDP---HGEYASLF 68 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcC---CCcchhhh
Confidence 5699999999999999999999999 88888888887 55765444
No 239
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.48 E-value=0.0021 Score=52.87 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N 59 (376)
+|+|+|..|+|||||.+.|++
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999984
No 240
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.48 E-value=0.006 Score=56.18 Aligned_cols=50 Identities=28% Similarity=0.265 Sum_probs=38.8
Q ss_pred HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcC------CcEEEEcCC
Q 017141 24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRY------KKVAYLDTD 74 (376)
Q Consensus 24 ~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~------~~v~~lDlD 74 (376)
.+|.+..++ -..+..+.|.|+.|+|||+||..++-..+..+ .+|+|+|.+
T Consensus 7 ~lD~~l~GG-~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 7 ALDELLGGG-IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred HHHHHhCCC-CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 345554322 23478999999999999999999988877766 789998886
No 241
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.44 E-value=0.0023 Score=57.06 Aligned_cols=32 Identities=31% Similarity=0.526 Sum_probs=28.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+.|++||..|+||||+.|.|+..| ..-|+|.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L-----~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL-----NLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc-----CCCcccch
Confidence 568999999999999999999987 55689998
No 242
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.42 E-value=0.0056 Score=56.03 Aligned_cols=40 Identities=25% Similarity=0.256 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
..++|.++|..|||||||...|+..+- .+.+++++..|++
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~ 60 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVI 60 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCC
Confidence 367899999999999999999999864 3568999998875
No 243
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.41 E-value=0.0039 Score=58.90 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=32.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
.-+++.|+.|+|||+|+..++|++.+.+.+|.|+++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 368999999999999999999999999999999853
No 244
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.41 E-value=0.0025 Score=56.56 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+..|+|+|++||||||+++.|++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 3579999999999999999999864
No 245
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.41 E-value=0.0043 Score=58.41 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~ 69 (376)
+-|+.|+|++|||||||++.|+..+-+....+.
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~ 45 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIF 45 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEE
Confidence 458999999999999999999988766554443
No 246
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.41 E-value=0.002 Score=58.68 Aligned_cols=58 Identities=19% Similarity=0.064 Sum_probs=49.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLT 95 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~ 95 (376)
.+|+|+|+.|+|||||+..|........+.+...+.++++......+.+.+..++.++
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~g 63 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCC
Confidence 5899999999999999999999988888888888888888887777677777777753
No 247
>PRK12377 putative replication protein; Provisional
Probab=96.39 E-value=0.0044 Score=58.72 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=33.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
..+++.|+.|+|||+|+..++|.+.++|..|.|+..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~ 137 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTV 137 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEH
Confidence 569999999999999999999999999999999876
No 248
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.39 E-value=0.0031 Score=57.26 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=27.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
.+|.|+|+.||||||++++|.+ + ...++|+|-=
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~-----g~~~i~~D~~ 35 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-L-----GAPVIDADAI 35 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c-----CCEEEEecHH
Confidence 4799999999999999999987 2 3568888853
No 249
>PRK04328 hypothetical protein; Provisional
Probab=96.39 E-value=0.0054 Score=57.99 Aligned_cols=40 Identities=20% Similarity=0.298 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.+..++|.|++|+|||+||..++-..+++|.+++|+.++-
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 4779999999999999999998887888899999998853
No 250
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.38 E-value=0.0056 Score=60.17 Aligned_cols=39 Identities=28% Similarity=0.372 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..+.|.|+.+|||||||..++-.+.+.+.+++|+|..
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 467899999999999999999999888999999999973
No 251
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.38 E-value=0.0031 Score=56.02 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
..++|+|+.||||||+++.|++.+
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 252
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.36 E-value=0.0043 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLV 58 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~ 58 (376)
+..+.+.|+.|||||||++.|.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 5689999999999999999986
No 253
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.36 E-value=0.0046 Score=62.55 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..|-|+|+.|||||||++.|...+-..+.++..|-+|
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiD 249 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSID 249 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEEC
Confidence 456788999999999999999966553345555555444
No 254
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.36 E-value=0.0028 Score=54.88 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.|||++|+.+||||||++.|..
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 4899999999999999997754
No 255
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.33 E-value=0.0037 Score=61.98 Aligned_cols=41 Identities=20% Similarity=0.322 Sum_probs=32.3
Q ss_pred CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141 17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL 62 (376)
Q Consensus 17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll 62 (376)
...+|...+..... .+..|+|+|+.|||||||++.|++++-
T Consensus 147 ~~~~~~~~l~~~v~-----~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 147 DNGDLEAFLHACVV-----GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred ccHHHHHHHHHHHH-----cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 45567777776543 256899999999999999999998763
No 256
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.33 E-value=0.0072 Score=52.69 Aligned_cols=39 Identities=36% Similarity=0.426 Sum_probs=37.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+|-+|-|.|-.+|||||++-.|-.+|+++|.-.+.+|.|
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGD 68 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGD 68 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCc
Confidence 477999999999999999999999999999999999988
No 257
>PLN03025 replication factor C subunit; Provisional
Probab=96.32 E-value=0.0053 Score=60.10 Aligned_cols=29 Identities=31% Similarity=0.307 Sum_probs=25.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRY 65 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~ 65 (376)
.+.+++.||+|+||||+++.+++.+...+
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l~~~~ 62 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHELLGPN 62 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 46799999999999999999999986443
No 258
>PRK04182 cytidylate kinase; Provisional
Probab=96.31 E-value=0.0029 Score=55.80 Aligned_cols=30 Identities=33% Similarity=0.434 Sum_probs=25.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
+|.|+|..||||||+++.|++.+ ..-++|+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l-----g~~~id~ 31 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL-----GLKHVSA 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCcEecH
Confidence 68999999999999999999886 3346664
No 259
>PRK09354 recA recombinase A; Provisional
Probab=96.31 E-value=0.0062 Score=60.35 Aligned_cols=39 Identities=26% Similarity=0.363 Sum_probs=36.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..+.|.|+.+|||||||-.++....+.+.+++|+|..
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E 97 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 97 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc
Confidence 467999999999999999999998888999999999985
No 260
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.30 E-value=0.037 Score=52.17 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
.-|.+.|+|+.++||||+.+.|+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGR 49 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCC
Confidence 4689999999999999999998875
No 261
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.30 E-value=0.0053 Score=59.36 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKK 67 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~ 67 (376)
.+.+++.|++|+||||+++.+++.+...++.
T Consensus 38 ~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~ 68 (319)
T PRK00440 38 MPHLLFAGPPGTGKTTAALALARELYGEDWR 68 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 4568999999999999999999998654433
No 262
>PRK06921 hypothetical protein; Provisional
Probab=96.29 E-value=0.009 Score=57.13 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDl 73 (376)
+..+++.|++|+|||+|+..++|.++++ +..|+|+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 5679999999999999999999999988 899999875
No 263
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.29 E-value=0.0099 Score=59.59 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=35.9
Q ss_pred CCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEE
Q 017141 13 PAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYL 71 (376)
Q Consensus 13 ~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~l 71 (376)
..+.+|+++.+.+ .. ....|+|+|+.||||||+.+.|++++.+. ..++..+
T Consensus 133 ~~lgl~~~~~~~l---~~-----~~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~Ivti 185 (372)
T TIGR02525 133 KQMGIEPDLFNSL---LP-----AAGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTY 185 (372)
T ss_pred HHcCCCHHHHHHH---Hh-----cCCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEE
Confidence 4455677654443 21 13479999999999999999999998753 3455555
No 264
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.28 E-value=0.0043 Score=61.19 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=34.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
...+++.|+.|+|||.|+..+++.++++|..|.|+..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 3569999999999999999999999999999999876
No 265
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.28 E-value=0.0063 Score=53.44 Aligned_cols=42 Identities=24% Similarity=0.491 Sum_probs=34.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFT 81 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~ 81 (376)
|.++|.|..|+|||||.+.|+... .+.+++++-.|-|...+.
T Consensus 1 p~~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~G~~~~d 42 (158)
T cd03112 1 PVTVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEFGEVGID 42 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCCCccchh
Confidence 578999999999999999988763 478899988888766644
No 266
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.28 E-value=0.0054 Score=56.05 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=32.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
.+|.|+|+.|||||||++.+++.+-. ..++.++..|.+.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~l~~-~~~~~~~~~d~~~ 40 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRALRQ-KYQLAVITNDIYT 40 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhCc-CCcEEEEeCCcCC
Confidence 47899999999999999999987644 4568888888764
No 267
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.27 E-value=0.0037 Score=55.94 Aligned_cols=32 Identities=28% Similarity=0.382 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
.|.|+|+.||||||+++.|.+ + ...++|+|-=
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~-----g~~~i~~D~~ 32 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L-----GIPVIDADKI 32 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C-----CCCEEecCHH
Confidence 378999999999999999988 2 3457888743
No 268
>COG0218 Predicted GTPase [General function prediction only]
Probab=96.27 E-value=0.043 Score=50.01 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=73.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH--HHcCC------cEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCce
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL--LQRYK------KVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKR 108 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l--l~~~~------~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~ 108 (376)
.+-|.++|..|+|||||.+.|+|+- .+.+. .+-|.+.|.+ +..+|-|+.||.
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~-----------~~lVDlPGYGyA--------- 83 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE-----------LRLVDLPGYGYA--------- 83 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc-----------EEEEeCCCcccc---------
Confidence 5789999999999999999999943 44332 3455555544 455666554332
Q ss_pred eEEcCCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccccHHHHHHHHHHhCCCEEEEEec
Q 017141 109 CYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIGYDILVDMLKYITPTHVVKINI 188 (376)
Q Consensus 109 ~~f~G~~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~G~~ll~~~i~~~~p~~Vv~l~~ 188 (376)
.. |....+...+++..|-+.-+ ......++||.---++....+++ +.+...++..+|++..
T Consensus 84 -------kv---~k~~~e~w~~~i~~YL~~R~--------~L~~vvlliD~r~~~~~~D~em~-~~l~~~~i~~~vv~tK 144 (200)
T COG0218 84 -------KV---PKEVKEKWKKLIEEYLEKRA--------NLKGVVLLIDARHPPKDLDREMI-EFLLELGIPVIVVLTK 144 (200)
T ss_pred -------cC---CHHHHHHHHHHHHHHHhhch--------hheEEEEEEECCCCCcHHHHHHH-HHHHHcCCCeEEEEEc
Confidence 11 23445666666666644311 13567789999877776666555 4556677777777765
Q ss_pred Cc
Q 017141 189 SF 190 (376)
Q Consensus 189 ~~ 190 (376)
-+
T Consensus 145 ~D 146 (200)
T COG0218 145 AD 146 (200)
T ss_pred cc
Confidence 43
No 269
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.26 E-value=0.0058 Score=54.40 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKK 67 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~ 67 (376)
+|+|.|++|+||||+++.+++++-.++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~ 29 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLP 29 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGG
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCc
Confidence 58999999999999999999998765443
No 270
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.24 E-value=0.0043 Score=62.65 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l 71 (376)
=|||.|++|+||||||..|++++.++|+-|-=+
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy~~~GkiVKTm 297 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFYASQGKIVKTM 297 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHHHhcCcEEeec
Confidence 499999999999999999999999998754443
No 271
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.24 E-value=0.0033 Score=57.93 Aligned_cols=42 Identities=21% Similarity=0.285 Sum_probs=35.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
+|.++.|+||+|+|||||.|.|+-++.-.+.+|.|-..|..+
T Consensus 26 pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~ 67 (259)
T COG4559 26 PGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNS 67 (259)
T ss_pred CCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhh
Confidence 578999999999999999999999987677778886665543
No 272
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.24 E-value=0.0042 Score=55.85 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+..++|+|+.||||||+.|.|+..+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3578999999999999999997653
No 273
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.23 E-value=0.0041 Score=56.42 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..|.|+|+.||||||+++.|+..+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57799999999999999999999974
No 274
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.21 E-value=0.011 Score=58.25 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=27.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHH--cCCcEEEEc
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQ--RYKKVAYLD 72 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~--~~~~v~~lD 72 (376)
+..|+|+|+.|||||||.+.|++++.. .+.++..++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiE 181 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILE 181 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEec
Confidence 457999999999999999999998753 234444444
No 275
>PRK07933 thymidylate kinase; Validated
Probab=96.20 E-value=0.0068 Score=55.97 Aligned_cols=35 Identities=31% Similarity=0.341 Sum_probs=31.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
-|.|.|.-||||||+++.|+++|-.+|.+|.++.-
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~ 36 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEARGRSVATLAF 36 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 47899999999999999999999999988887654
No 276
>PRK06851 hypothetical protein; Provisional
Probab=96.20 E-value=0.032 Score=55.72 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=41.6
Q ss_pred CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE--cCCCC
Q 017141 17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL--DTDVG 76 (376)
Q Consensus 17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l--DlD~G 76 (376)
.++......+.+... ....+++.|++|+||||+++.+++.+.++|+.|-++ .+|+.
T Consensus 14 T~~Gf~s~~~~~~~~----~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~ 71 (367)
T PRK06851 14 TARGFYSLYDSIIDG----ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDND 71 (367)
T ss_pred CCCchhhhhhhhccc----cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCC
Confidence 344555555555422 246789999999999999999999999999887766 55554
No 277
>PRK14528 adenylate kinase; Provisional
Probab=96.20 E-value=0.005 Score=55.55 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++|+|.|++||||||+|+.|+.++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998775
No 278
>PRK08116 hypothetical protein; Validated
Probab=96.19 E-value=0.0068 Score=58.01 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=33.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
.-+++.|+.|+|||.|+..++|++.+++..|+|++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF 150 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 359999999999999999999999998989999874
No 279
>PRK02496 adk adenylate kinase; Provisional
Probab=96.18 E-value=0.0047 Score=55.21 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+++|.|++||||||+|+.|+.++
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999875
No 280
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.17 E-value=0.0055 Score=55.53 Aligned_cols=53 Identities=15% Similarity=0.265 Sum_probs=40.5
Q ss_pred HHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 22 SDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 22 ~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
..+++.+.-+- .++.-++++|+.|+|||||.|.|.....-...++.+-+.|.+
T Consensus 15 ~~aL~~vs~~i--~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~ 67 (223)
T COG2884 15 REALRDVSFHI--PKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLS 67 (223)
T ss_pred chhhhCceEee--cCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecc
Confidence 45666554222 247789999999999999999999887666677888777765
No 281
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.17 E-value=0.0099 Score=55.13 Aligned_cols=51 Identities=27% Similarity=0.381 Sum_probs=36.6
Q ss_pred HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCC
Q 017141 23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTD 74 (376)
Q Consensus 23 ~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD 74 (376)
.+++.++.+.. .....++|.|++|+|||.|.+.++|++.+. +.+|.|++++
T Consensus 21 ~~~~~ia~~~~-~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~ 73 (219)
T PF00308_consen 21 AAAKAIAENPG-ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE 73 (219)
T ss_dssp HHHHHHHHSTT-TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH
T ss_pred HHHHHHHhcCC-CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH
Confidence 34455654321 123458999999999999999999999875 5678887653
No 282
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.17 E-value=0.0041 Score=52.45 Aligned_cols=27 Identities=33% Similarity=0.533 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLL 62 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll 62 (376)
++.++.|+|+.|||||||.+.|+...-
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 467999999999999999998887654
No 283
>PLN02348 phosphoribulokinase
Probab=96.15 E-value=0.0081 Score=60.27 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLL 62 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll 62 (376)
.+..|.|.|+.|||||||++.|++.+-
T Consensus 48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 48 GTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357888999999999999999999984
No 284
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=96.14 E-value=0.0084 Score=58.51 Aligned_cols=41 Identities=32% Similarity=0.397 Sum_probs=36.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
+.+++.|.-|+||||++-.++=++.++|+++.++..||..+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 35778888899999999999999999999999999999864
No 285
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.14 E-value=0.017 Score=52.57 Aligned_cols=48 Identities=27% Similarity=0.311 Sum_probs=35.5
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (376)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l 71 (376)
+=.++++.+..+. ...++|.|+.|+||||+.+.+.+.+...+.+|.++
T Consensus 5 ~Q~~a~~~~l~~~----~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ 52 (196)
T PF13604_consen 5 EQREAVRAILTSG----DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGL 52 (196)
T ss_dssp HHHHHHHHHHHCT----CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHHhcC----CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 3455666665322 35788899999999999999999998888777775
No 286
>PLN02199 shikimate kinase
Probab=96.14 E-value=0.0051 Score=59.53 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|+++|..||||||+++.|++.+ ...|+|+|
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~L-----g~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVL-----GYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-----CCCEEehH
Confidence 6789999999999999999999987 55689998
No 287
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.12 E-value=0.0047 Score=56.16 Aligned_cols=38 Identities=26% Similarity=0.465 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.+..+++.|++||||||+++.+...+- +....++|.|-
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~ 51 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADE 51 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHH
Confidence 366788889999999999999888764 56778888884
No 288
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.12 E-value=0.0078 Score=57.25 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=40.6
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH--HcCCcEEEEcCCCCC
Q 017141 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL--QRYKKVAYLDTDVGQ 77 (376)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll--~~~~~v~~lDlD~GQ 77 (376)
+.+++.+.+.... ....+|.|.|..|+||||||+.+++..- +.+..++|+++....
T Consensus 4 ~~~~l~~~L~~~~--~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~ 61 (287)
T PF00931_consen 4 EIEKLKDWLLDNS--NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP 61 (287)
T ss_dssp HHHHHHHHHHTTT--TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S
T ss_pred HHHHHHHHhhCCC--CCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccc
Confidence 4556666666422 3468999999999999999999998843 344568888876443
No 289
>PLN02200 adenylate kinase family protein
Probab=96.11 E-value=0.0054 Score=57.54 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+.+|+|+|++||||||+|+.|+.++
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999998875
No 290
>PRK13764 ATPase; Provisional
Probab=96.11 E-value=0.0076 Score=63.82 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
...|+|+|++|||||||++.|++++...++.|..++ ||
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiE-Dp 294 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTME-SP 294 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEEC-CC
Confidence 356999999999999999999999987777776776 44
No 291
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.10 E-value=0.0033 Score=57.41 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.++.|+|+.|||||||++.|+..+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999999999864
No 292
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.10 E-value=0.0042 Score=55.82 Aligned_cols=34 Identities=24% Similarity=0.221 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~ 69 (376)
++.++.|+|+.|+|||||.|.|+..+--...++.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 57 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDE 57 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEE
Confidence 4779999999999999999999886533333343
No 293
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.09 E-value=0.011 Score=57.75 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=24.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRY 65 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~ 65 (376)
+.+++.||+|+||||+++.+++.+...+
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 4699999999999999999999986443
No 294
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.09 E-value=0.0054 Score=54.65 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
+|-+++|.||.|+|||||.|.+++-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhc
Confidence 5789999999999999999999884
No 295
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.09 E-value=0.0074 Score=56.14 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=30.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
+..++|+|+.|+||||+++.|. .++.+++.|-+-..
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~~~~ 47 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMSSKV 47 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC-------CCCEEEeccccchh
Confidence 5789999999999999999884 46889999976444
No 296
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.07 E-value=0.0056 Score=53.60 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
||.|+|+.++|||||++.|..+
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6899999999999999999977
No 297
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.06 E-value=0.0093 Score=56.77 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=30.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
+..|++.|++|+||||+++.|++.+ +..+..++++.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~ 56 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDA 56 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCc
Confidence 4578999999999999999999854 77888888865
No 298
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.05 E-value=0.0066 Score=63.15 Aligned_cols=34 Identities=38% Similarity=0.574 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+.+|.|.|+.||||||+++.|++++ ...++|.|
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l-----~~~~~d~g 316 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKL-----GLLYLDTG 316 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc-----CCeEecCC
Confidence 57899999999999999999999997 35666654
No 299
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=96.04 E-value=0.0064 Score=55.92 Aligned_cols=39 Identities=26% Similarity=0.192 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (376)
+..|-++|+.||||||++++|...+ ...++|+|.=-.++
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~l-----g~~vidaD~i~~~l 44 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKL-----NLNVVCADTISREI 44 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHc-----CCeEEeccHHHHHH
Confidence 4579999999999999999998754 34488998664444
No 300
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.04 E-value=0.0095 Score=61.19 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=35.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
++..++|.|++|+|||||+..++..+.+++.+|+|++..
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 467999999999999999999999988889999999874
No 301
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.03 E-value=0.099 Score=48.24 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+++|.|+.++|||||.|.+.-
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7899999999999999999984
No 302
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.02 E-value=0.0048 Score=56.57 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|+|||||.|.|+..+--...++.+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 63 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV 63 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEE
Confidence 47899999999999999999999865323334443
No 303
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.01 E-value=0.0098 Score=61.22 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=35.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
++..++|.|++|+|||||+..++..+.+.+.+|+|++.+
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E 131 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE 131 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 477999999999999999999999888888899999875
No 304
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.00 E-value=0.0041 Score=56.87 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=27.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|+|||||++.|+..+--...++.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~ 59 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 47799999999999999999999865333445554
No 305
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.00 E-value=0.014 Score=49.60 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|.++|+.|+|||||+..|++
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999988764
No 306
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.99 E-value=0.0048 Score=58.59 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
++..+-|+||.|||||||.|.|+..+--+...|.+=+-|+.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~ 67 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA 67 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchh
Confidence 47899999999999999999999987545555655444443
No 307
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.99 E-value=0.017 Score=57.74 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=33.4
Q ss_pred HHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141 22 SDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKK 67 (376)
Q Consensus 22 ~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~ 67 (376)
.+++|.+.-- ..|.|++|+|+.|+||||+++.+++.+.+.+..
T Consensus 121 ~RvID~l~Pi---GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~d 163 (380)
T PRK12608 121 MRVVDLVAPI---GKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPE 163 (380)
T ss_pred Hhhhhheeec---CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4466655422 348899999999999999999999998776433
No 308
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.99 E-value=0.0044 Score=56.69 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|.++.|+|+.|+|||||.+.|+..+--...++.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 47799999999999999999999865333344444
No 309
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=95.99 E-value=0.063 Score=49.61 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017141 40 AFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~l 61 (376)
|.|-|.-||||||+++.|++++
T Consensus 2 I~iEG~~GsGKSTl~~~L~~~l 23 (219)
T cd02030 2 ITVDGNIASGKGKLAKELAEKL 23 (219)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999997
No 310
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.96 E-value=0.014 Score=58.60 Aligned_cols=58 Identities=22% Similarity=0.234 Sum_probs=41.9
Q ss_pred ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH--HcCCcEEEEcCCC
Q 017141 18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL--QRYKKVAYLDTDV 75 (376)
Q Consensus 18 p~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll--~~~~~v~~lDlD~ 75 (376)
++-|......+..+....++..|+++||+|+||||-..-|+.+.. .+.++|+++-+|.
T Consensus 184 ~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt 243 (407)
T COG1419 184 SEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT 243 (407)
T ss_pred HHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence 446777776665442112367999999999999987666666665 6678899998883
No 311
>PLN02924 thymidylate kinase
Probab=95.95 E-value=0.013 Score=54.46 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l 71 (376)
.+.-|.|.|.-||||||.++.|.+++-..|.+|.++
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~ 50 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELW 50 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceee
Confidence 467899999999999999999999998888877654
No 312
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.94 E-value=0.0063 Score=53.09 Aligned_cols=24 Identities=38% Similarity=0.546 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|+.|+|||||.+.|.+.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 678999999999999999988764
No 313
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.94 E-value=0.0059 Score=53.91 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.++.|+|+.|+|||||++.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998865
No 314
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.94 E-value=0.0092 Score=63.93 Aligned_cols=40 Identities=23% Similarity=0.304 Sum_probs=36.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.+..|+++|..||||||+++.|++++-..+..+.++|-|-
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~ 498 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDN 498 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChh
Confidence 4789999999999999999999999987788899999985
No 315
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.93 E-value=0.12 Score=47.02 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
+.+++|+|+.|+|||||.|.++.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 46999999999999999999993
No 316
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.93 E-value=0.0085 Score=53.44 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=24.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l 71 (376)
.+++|.|+.+|||||||..|+..+ +.++.|+
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~~~~~i 32 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GLQVLYI 32 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CCCcEeC
Confidence 479999999999999999997653 3345553
No 317
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.92 E-value=0.0075 Score=55.71 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|+|||||++.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999999876
No 318
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.91 E-value=0.0067 Score=53.05 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+|.|.|+.||||||+++.|++.+ ..-++|.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l-----g~~~~~~~ 32 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL-----SLKLISAG 32 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCceecHH
Confidence 68999999999999999999875 33466654
No 319
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.91 E-value=0.0072 Score=49.43 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRY 65 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~ 65 (376)
|.|.|++|+|||++++.|+..+++..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 57899999999999999999998754
No 320
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.91 E-value=0.0046 Score=56.82 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=27.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||.+.|+..+--....+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF 59 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 47899999999999999999998764323334544
No 321
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.90 E-value=0.006 Score=55.16 Aligned_cols=40 Identities=25% Similarity=0.630 Sum_probs=29.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
++.++.|+|+.|+|||||.|.|+..+--...++.+-+.|+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i 64 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI 64 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCccc
Confidence 4779999999999999999999986533334455433343
No 322
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.90 E-value=0.0079 Score=55.63 Aligned_cols=35 Identities=34% Similarity=0.389 Sum_probs=28.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
-.|-|.|+.||||||+|+.|.+.+-. .++.++-+|
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~--~~~~~I~~D 43 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGV--EKVVVISLD 43 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCc--CcceEeecc
Confidence 57889999999999999999998732 266666655
No 323
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.90 E-value=0.0054 Score=56.21 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|.++.|+|+.|||||||.|.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999999854
No 324
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.89 E-value=0.013 Score=58.86 Aligned_cols=39 Identities=28% Similarity=0.437 Sum_probs=35.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
++..++|.|++|+|||||+..++..+.+.+.+|+|++..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 467999999999999999999999988888899999875
No 325
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.89 E-value=0.006 Score=57.11 Aligned_cols=41 Identities=20% Similarity=0.181 Sum_probs=32.0
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL 62 (376)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll 62 (376)
.|-.+++.++-+- .+|-++-|+|+.||||||++|.|+-+.-
T Consensus 18 ~~~~~l~~VS~~i--~~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 18 FAFHALNNVSLEI--ERGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred chhhhhcceeEEe--cCCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 4666777765332 2478999999999999999999998753
No 326
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=95.88 E-value=0.0075 Score=54.23 Aligned_cols=33 Identities=24% Similarity=0.304 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
+|.|+|+.||||||+++.|.+.. ...++|+|-=
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-----~~~~i~~D~~ 33 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-----HFPVIDADKI 33 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-----CCeEEeCCHH
Confidence 37899999999999999998863 3457888844
No 327
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=95.88 E-value=0.0071 Score=51.00 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
+|+++|++++|||||...|.+.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999988754
No 328
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.87 E-value=0.0071 Score=52.11 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N 59 (376)
+|+|+|++++|||||++.|++
T Consensus 2 ki~v~G~~~vGKTsli~~l~~ 22 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVE 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999875
No 329
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.86 E-value=0.0056 Score=54.30 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|+|||||.+.|+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999998754
No 330
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.86 E-value=0.0058 Score=55.89 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.++.|+|+.|||||||.+.|+..+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999998754
No 331
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.86 E-value=0.015 Score=58.87 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD 74 (376)
...+++.|+.|+|||+|++.++|.+.+. +.+|.|++++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 3468999999999999999999999876 5678887653
No 332
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.86 E-value=0.026 Score=58.88 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=43.1
Q ss_pred cCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCCC
Q 017141 16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVG 76 (376)
Q Consensus 16 ~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~G 76 (376)
-+|-.+. -+|.+...+ -..+..++|.|++|+|||||+..++...+++ |.+|+|+.++-.
T Consensus 12 ri~TGI~-~LD~~l~GG-~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~ 71 (509)
T PRK09302 12 KLPTGIE-GFDDITHGG-LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES 71 (509)
T ss_pred cccCCch-hHHHhhcCC-CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 4444433 344454322 2347899999999999999999998887777 899999988654
No 333
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.0056 Score=56.95 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|.++.|+|+.|+|||||++.|+..+--...++.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 47899999999999999999998764322334443
No 334
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.85 E-value=0.0055 Score=56.71 Aligned_cols=50 Identities=12% Similarity=0.229 Sum_probs=33.7
Q ss_pred HHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH---HcCCcEEEEc
Q 017141 21 WSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL---QRYKKVAYLD 72 (376)
Q Consensus 21 W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll---~~~~~v~~lD 72 (376)
+..+++.+.-+- .++..+.|+|+.|+|||||++.|+..+- -...++.+-+
T Consensus 19 ~~~~l~~vsl~i--~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g 71 (226)
T cd03234 19 YARILNDVSLHV--ESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG 71 (226)
T ss_pred ccccccCceEEE--cCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECC
Confidence 345555443211 2477999999999999999999998764 2334455433
No 335
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.85 E-value=0.011 Score=56.22 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQ 63 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~ 63 (376)
.+.+++.||+|+||||+||.+++.+.+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 467999999999999999999998743
No 336
>PRK13695 putative NTPase; Provisional
Probab=95.84 E-value=0.012 Score=52.06 Aligned_cols=30 Identities=30% Similarity=0.295 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcE
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKV 68 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v 68 (376)
+|+++|+.|+|||||++.+++.+...|..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 689999999999999999999977656554
No 337
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.84 E-value=0.012 Score=52.53 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l 71 (376)
++|.|+.+|||||||..++-. .+.+++|+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~ 30 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYI 30 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEE
Confidence 799999999999999988754 56688888
No 338
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.83 E-value=0.0061 Score=55.34 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|.++.|+|+.|+|||||.+.|+..+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999999999754
No 339
>PRK13973 thymidylate kinase; Provisional
Probab=95.83 E-value=0.015 Score=53.64 Aligned_cols=35 Identities=23% Similarity=0.127 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l 71 (376)
|.-|.|.|..||||||.++.|..+|-+.|.++.+.
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 46789999999999999999999998888877654
No 340
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.83 E-value=0.0069 Score=52.57 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
+|+|+|+.|+|||||++.|.+.
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999998875
No 341
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.83 E-value=0.0065 Score=55.44 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|||||||.+.|+..+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999999754
No 342
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.83 E-value=0.0087 Score=53.06 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|+|||||.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 47799999999999999999998754
No 343
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.82 E-value=0.0062 Score=54.73 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|||||||.+.|+...
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999998754
No 344
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=95.82 E-value=0.017 Score=61.43 Aligned_cols=37 Identities=30% Similarity=0.397 Sum_probs=34.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
.+.+-|+|.+|||||||+..|+.+|-++|++|+++.-
T Consensus 10 ~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh 46 (597)
T PRK14491 10 IPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKH 46 (597)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence 4688999999999999999999999999999999876
No 345
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.81 E-value=0.0076 Score=55.41 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~ 69 (376)
++..+.|+|+.|+|||||++.|+...--...++.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 62 (221)
T cd03244 29 PGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62 (221)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE
Confidence 4779999999999999999999876433333343
No 346
>PRK01184 hypothetical protein; Provisional
Probab=95.80 E-value=0.0087 Score=53.43 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=17.0
Q ss_pred CEEEEEcCCCCcHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRH 56 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~ 56 (376)
..|+|+|+.||||||++++
T Consensus 2 ~~i~l~G~~GsGKsT~a~~ 20 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSKI 20 (184)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3789999999999999983
No 347
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.80 E-value=0.007 Score=56.47 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||.+.|+..+--...++.+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE
Confidence 47899999999999999999998764323334443
No 348
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.80 E-value=0.007 Score=55.22 Aligned_cols=26 Identities=31% Similarity=0.476 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.++.|+|+.|+|||||.+.|+..+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999999999764
No 349
>PRK08356 hypothetical protein; Provisional
Probab=95.79 E-value=0.0079 Score=54.51 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLV 58 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~ 58 (376)
...|+|+|+.||||||+|++|.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999995
No 350
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.79 E-value=0.0065 Score=55.28 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.++.|+|+.|||||||.+.|+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999998754
No 351
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.79 E-value=0.0062 Score=54.40 Aligned_cols=26 Identities=31% Similarity=0.445 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.++.|+|+.|+|||||.|.|+..+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999998753
No 352
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.79 E-value=0.013 Score=60.82 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD 74 (376)
.+..+||.|++|+||||||..++-..+++ |.++.|+.++
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 47799999999999999999877655555 8899998875
No 353
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.79 E-value=0.0066 Score=55.88 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|+|||||.+.|+..+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999998754
No 354
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.78 E-value=0.0096 Score=61.11 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=33.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.-+++.|+.|+|||+|++.++|++.+.+.+|.|++.+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4589999999999999999999999888999998864
No 355
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=95.78 E-value=0.0081 Score=52.05 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|+|+|++|+|||||.+.|.+.-
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 69999999999999999887753
No 356
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.78 E-value=0.0061 Score=56.58 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
++..+.|+|+.|||||||++.|+..+--...++.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 64 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLV 64 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 47899999999999999999998765333334444
No 357
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.78 E-value=0.0061 Score=54.53 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
++.++.|+|+.|+|||||.+.|+...--...++.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPPASGEITL 59 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 47799999999999999999999865323334433
No 358
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=95.78 E-value=0.0084 Score=51.19 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+|+|+|..|+|||||.+.|++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~ 23 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQ 23 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999888875
No 359
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.77 E-value=0.0061 Score=56.46 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|.++.|+|+.|||||||.+.|+..+--...++.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 47899999999999999999999865333344544
No 360
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.75 E-value=0.0071 Score=55.56 Aligned_cols=34 Identities=24% Similarity=0.133 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~ 69 (376)
+|..+.|+|+.|||||||.+.|+...--....+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 60 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 4779999999999999999999986432333343
No 361
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.75 E-value=0.0071 Score=54.90 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|.++.|+|+.|+|||||.+.|+...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999998754
No 362
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.75 E-value=0.013 Score=58.31 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQ 63 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~ 63 (376)
...++++||+|+|||||++.|++.+-+
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 467899999999999999999999854
No 363
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.75 E-value=0.0069 Score=55.65 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.++.|+|+.|+|||||.+.|+..+
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998754
No 364
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.75 E-value=0.0064 Score=55.55 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
++ ++.|+|+.|+|||||.+.|+..+--...++.+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 58 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRI 58 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEE
Confidence 36 89999999999999999998754323334544
No 365
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.74 E-value=0.017 Score=56.38 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=33.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
+.-+++.|+.|+|||.|+..++|.+.++|.+|.|+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~ 192 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF 192 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH
Confidence 4579999999999999999999999999999998754
No 366
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.73 E-value=0.0074 Score=57.97 Aligned_cols=33 Identities=30% Similarity=0.485 Sum_probs=24.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
|-|+|+.|||||||++.|++.+-.. .+.++.+|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~--~~~vi~~D 34 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSD--LVTVICLD 34 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCC--ceEEEECc
Confidence 6799999999999999999876322 23344444
No 367
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.73 E-value=0.014 Score=60.45 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=35.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
++..++|.|++|+|||||+..++..++++|.+++|+-.+
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e 300 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE 300 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 477999999999999999999999999999999997665
No 368
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.73 E-value=0.019 Score=56.14 Aligned_cols=49 Identities=14% Similarity=0.166 Sum_probs=37.8
Q ss_pred HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 24 ~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
+++.+.......+..|+++.|++|||||++...++.|+..+++-|++|.
T Consensus 10 l~~~l~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~~wiVl~vp 58 (309)
T PF10236_consen 10 LINKLKEADKSSKNNRYVLTGERGSGKSVLLAQAVHYARENGWIVLYVP 58 (309)
T ss_pred HHHHHHHhcccCCceEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEcC
Confidence 3444433223345789999999999999999999999999988777753
No 369
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73 E-value=0.0094 Score=54.36 Aligned_cols=26 Identities=27% Similarity=0.370 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|.++.|+|+.|||||||.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999999754
No 370
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73 E-value=0.0081 Score=55.52 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|.++.|+|+.|+|||||.+.|+..+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 47799999999999999999999765
No 371
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.72 E-value=0.0093 Score=54.49 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+..|+|+|.+|+||||+|+.|+..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999985
No 372
>PRK04040 adenylate kinase; Provisional
Probab=95.71 E-value=0.01 Score=53.84 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+.+|+|.|..||||||+++.|++.+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999987
No 373
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.71 E-value=0.0074 Score=55.89 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~ 69 (376)
+|.++.|+|+.|||||||.|.|+..+--...++.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 58 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKIL 58 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 4779999999999999999999976532333443
No 374
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.0091 Score=55.38 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|+|||||++.|+..+--...++.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILI 61 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEE
Confidence 47799999999999999999998775333334443
No 375
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.71 E-value=0.0063 Score=56.77 Aligned_cols=35 Identities=17% Similarity=0.277 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
++..+.|+|+.|+|||||++.|+..+--...++.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 47899999999999999999999864333344544
No 376
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.70 E-value=0.019 Score=58.50 Aligned_cols=123 Identities=16% Similarity=0.175 Sum_probs=74.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCC---CCC--CCCCCCCcee
Q 017141 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTP---DLT--IPCLKTPKRC 109 (376)
Q Consensus 35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~---~~~--~~~~~~p~~~ 109 (376)
..+.+|.+||-.|+||||=..-++=||++.+.+|++.-||+=-+ ..+++... .+. +.++ -+...
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRs----------GAvEQLrtHv~rl~~l~~~~-v~lfe 444 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRS----------GAVEQLRTHVERLSALHGTM-VELFE 444 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhh----------hHHHHHHHHHHHHHHhccch-hHHHh
Confidence 35779999999999999999999999999999999999995322 22332110 000 0000 00000
Q ss_pred EEcCCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCcccccc--HHHHHHHHHHhCCCEEEEEe
Q 017141 110 YFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGIG--YDILVDMLKYITPTHVVKIN 187 (376)
Q Consensus 110 ~f~G~~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~G--~~ll~~~i~~~~p~~Vv~l~ 187 (376)
-=||- ++. ..+++.++ +.++ ..-..++|||-|-...-- ..-|..+++.-+||+|++++
T Consensus 445 kGYgk-----d~a---~vak~AI~-~a~~-----------~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vg 504 (587)
T KOG0781|consen 445 KGYGK-----DAA---GVAKEAIQ-EARN-----------QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVG 504 (587)
T ss_pred hhcCC-----ChH---HHHHHHHH-HHHh-----------cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEeh
Confidence 01221 111 11111111 1111 133468999999887532 34677899999999999988
Q ss_pred c
Q 017141 188 I 188 (376)
Q Consensus 188 ~ 188 (376)
.
T Consensus 505 e 505 (587)
T KOG0781|consen 505 E 505 (587)
T ss_pred h
Confidence 4
No 377
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.70 E-value=0.0085 Score=51.46 Aligned_cols=22 Identities=14% Similarity=0.314 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
+|+|+|+.|+|||||.+.|++.
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7999999999999999988754
No 378
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.70 E-value=0.0069 Score=55.75 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||.+.|+..+--...++.+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 63 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLV 63 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 47799999999999999999999764323334443
No 379
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.70 E-value=0.0068 Score=55.46 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
++.++.|+|+.|||||||.+.|+..+--...++.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 58 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 47899999999999999999998764322334443
No 380
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.70 E-value=0.0062 Score=56.13 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|.++.|+|+.|+|||||.+.|+...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999999754
No 381
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.69 E-value=0.0059 Score=57.14 Aligned_cols=35 Identities=17% Similarity=0.211 Sum_probs=27.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||+|.|+..+--...+|.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 62 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 47799999999999999999999854323334444
No 382
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.69 E-value=0.019 Score=56.57 Aligned_cols=58 Identities=10% Similarity=0.105 Sum_probs=42.1
Q ss_pred ccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 15 IYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 15 ~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+--.+.|.++.+.+..-.. ...-|||+|.+|+||+++||.+-+.--+.+..-..+||.
T Consensus 9 iG~S~~~~~~~~~i~~~a~--~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~ 66 (326)
T PRK11608 9 LGEANSFLEVLEQVSRLAP--LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (326)
T ss_pred EECCHHHHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCC
Confidence 3456789999988764332 245699999999999999999987554444555566665
No 383
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.69 E-value=0.014 Score=56.88 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH------cCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ------RYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~------~~~~v~~lDlD 74 (376)
.+..+.|+|++|+||||||-.++-.... .+.+|+|+|..
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te 138 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTE 138 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECC
Confidence 3678999999999999999999766542 12489999985
No 384
>CHL00181 cbbX CbbX; Provisional
Probab=95.69 E-value=0.014 Score=56.36 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR 64 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~ 64 (376)
.+..+++.|++|+||||+||.++..+...
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35679999999999999999999988654
No 385
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.69 E-value=0.0068 Score=56.28 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|.++.|+|+.|||||||.+.|+..+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 47799999999999999999998754
No 386
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.68 E-value=0.009 Score=53.20 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|+|||||+|.|+...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 47799999999999999999998764
No 387
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.68 E-value=0.0091 Score=52.84 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|+|||||.|.|+..+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999999864
No 388
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.68 E-value=0.017 Score=55.92 Aligned_cols=42 Identities=17% Similarity=0.141 Sum_probs=35.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
....|-|+|+.|||||||...|++.+... .++++++-|.+..
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~t~ 144 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQTV 144 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEECCCcCcH
Confidence 47899999999999999999999997544 5899999987643
No 389
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.0091 Score=52.01 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
..|.|||+|-+|+||||||..|+...
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 36899999999999999999999543
No 390
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.68 E-value=0.013 Score=57.56 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLL 62 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll 62 (376)
+..++|+|+.|||||||++.|+++..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 46899999999999999999998764
No 391
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.68 E-value=0.015 Score=54.88 Aligned_cols=45 Identities=24% Similarity=0.312 Sum_probs=31.7
Q ss_pred CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141 17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLL 62 (376)
Q Consensus 17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll 62 (376)
-.+.-.+++..+..... ..+..++|+|+.|+||||+++.+++.+-
T Consensus 24 ~~~~~~~~~~~l~~~~~-~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLS-QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCHHHHHHHHHHHHHHh-cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 33455666666543211 1245799999999999999999988864
No 392
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.68 E-value=0.011 Score=59.89 Aligned_cols=44 Identities=23% Similarity=0.564 Sum_probs=33.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEE
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLS 87 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vS 87 (376)
+..|+++|++|+||||++|.|+..+ ..-|+.+| ..+|+-+|.+.
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l-----~~~fi~vD--~t~f~e~GyvG 93 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLA-----NAPFIKVE--ATKFTEVGYVG 93 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh-----CChheeec--chhhccCCccc
Confidence 5789999999999999999999986 45566665 44566666544
No 393
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.67 E-value=0.0066 Score=56.43 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|||||||.+.|+..+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999999999754
No 394
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.67 E-value=0.0078 Score=56.02 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||.+.|+..+--....+.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 60 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 47899999999999999999999864323334443
No 395
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=95.67 E-value=0.0092 Score=51.34 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
+|+|+|+.++|||||.+.|++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKN 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999888753
No 396
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.67 E-value=0.0097 Score=55.09 Aligned_cols=26 Identities=23% Similarity=0.575 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.++.|+|+.|+|||||++.|+...
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999998753
No 397
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=95.66 E-value=0.0078 Score=58.06 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQ 63 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~ 63 (376)
-+|||+|.+|+|||||.+.|++..+.
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~ 30 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDII 30 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS--
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccc
Confidence 47999999999999999999997653
No 398
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.66 E-value=0.016 Score=55.10 Aligned_cols=41 Identities=29% Similarity=0.391 Sum_probs=33.9
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141 39 IAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (376)
Q Consensus 39 ~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (376)
.|.|.|+| |+||||++-.|+-.+ ...+++.++|||+-.|++
T Consensus 3 ~vAV~sGKGGtGKTTva~~la~~l-~~~~~~~l~DcDVe~PNl 44 (284)
T COG1149 3 QVAVASGKGGTGKTTVAANLAVLL-GDKYKLVLADCDVEAPNL 44 (284)
T ss_pred EEEEeecCCCCChhhHHHHHHHHh-ccccceEEEecCCCCCCc
Confidence 57788887 899999999998765 445679999999998874
No 399
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.66 E-value=0.018 Score=54.98 Aligned_cols=33 Identities=30% Similarity=0.310 Sum_probs=28.3
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKK 67 (376)
Q Consensus 35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~ 67 (376)
..+-+|-|+|+.++||||+||.|.+-+-+.+..
T Consensus 80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~ 112 (283)
T COG1072 80 QRPFIIGIAGSVAVGKSTTARILQALLSRWPES 112 (283)
T ss_pred CCCEEEEeccCccccHHHHHHHHHHHHhhCCCC
Confidence 346799999999999999999999988776554
No 400
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.66 E-value=0.025 Score=55.55 Aligned_cols=60 Identities=15% Similarity=0.133 Sum_probs=44.0
Q ss_pred hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEE
Q 017141 19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLS 87 (376)
Q Consensus 19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vS 87 (376)
+.+..++..+.. +..|++.|++|+||||+++.|+..+ ++...-++++..-......|.-+
T Consensus 52 ~~~~~vl~~l~~------~~~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~~DliG~~~ 111 (327)
T TIGR01650 52 ATTKAICAGFAY------DRRVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSRIDLVGKDA 111 (327)
T ss_pred HHHHHHHHHHhc------CCcEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCChhhcCCCce
Confidence 456666665542 3469999999999999999999987 56777787777655544556543
No 401
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.65 E-value=0.011 Score=53.02 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLV 58 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~ 58 (376)
++.++.|+|+.|+|||||.|.++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 47899999999999999999885
No 402
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=95.65 E-value=0.012 Score=53.94 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=26.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|-|+|+.||||||++++|... ...++|+|
T Consensus 5 ~~~igitG~igsGKSt~~~~l~~~------g~~v~d~D 36 (208)
T PRK14731 5 PFLVGVTGGIGSGKSTVCRFLAEM------GCELFEAD 36 (208)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC------CCeEEecc
Confidence 457889999999999999999863 45678888
No 403
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.64 E-value=0.03 Score=54.13 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=40.9
Q ss_pred CCCCCCCCCCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141 5 MPQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKK 67 (376)
Q Consensus 5 ~~~~~~~~~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~ 67 (376)
+|........+.+|+-..++++ . +..-|||.||+||||||-...++||+-+...+
T Consensus 101 Ip~~i~~~e~LglP~i~~~~~~-----~---~~GLILVTGpTGSGKSTTlAamId~iN~~~~~ 155 (353)
T COG2805 101 IPSKIPTLEELGLPPIVRELAE-----S---PRGLILVTGPTGSGKSTTLAAMIDYINKHKAK 155 (353)
T ss_pred cCccCCCHHHcCCCHHHHHHHh-----C---CCceEEEeCCCCCcHHHHHHHHHHHHhccCCc
Confidence 4555556667778887776544 1 24589999999999999999999998654433
No 404
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.64 E-value=0.007 Score=53.28 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|+|||||.|.|+...
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998653
No 405
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.0079 Score=54.93 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.++.|+|+.|+|||||.|.|+...
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998765
No 406
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=95.63 E-value=0.014 Score=56.78 Aligned_cols=38 Identities=29% Similarity=0.360 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
.+..|+|.|+.||||||+|+.|++++ +.. .++..|.=+
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l---~~~-~vi~~D~~r 128 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRL---GIR-SVIGTDSIR 128 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh---CCC-EEEechHHH
Confidence 35799999999999999999999988 322 466666544
No 407
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.63 E-value=0.02 Score=58.24 Aligned_cols=40 Identities=33% Similarity=0.329 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-C-CcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-Y-KKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~-~~v~~lDlD~ 75 (376)
.+.+|+++|++|+||||+++.|+.++... + .++.++-.|.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~ 231 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS 231 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 46799999999999999999999976532 2 4566665553
No 408
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=95.63 E-value=0.0086 Score=51.02 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N 59 (376)
+|+|+|++|||||||.+.|.+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~ 21 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK 21 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999988864
No 409
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.62 E-value=0.0085 Score=56.62 Aligned_cols=35 Identities=31% Similarity=0.372 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|.++.|+|+.|||||||++.|+..+--...++.+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHY 65 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 57899999999999999999999865333344444
No 410
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.61 E-value=0.0083 Score=54.61 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
++.++.|+|+.|+|||||.+.|+..+--...+|.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~ 60 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 47899999999999999999998865333334443
No 411
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.61 E-value=0.0074 Score=56.23 Aligned_cols=35 Identities=17% Similarity=0.336 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|.++.|+|+.|||||||+|.|+...--....|.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 60 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV 60 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47899999999999999999998754323334544
No 412
>PLN02165 adenylate isopentenyltransferase
Probab=95.61 E-value=0.013 Score=57.78 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=28.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
.+..|.|+|++|||||||+..|+..+ ..-++++|--
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l-----~~eIIsaDs~ 77 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRF-----PSEIINSDKM 77 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHc-----CCceecCChh
Confidence 46789999999999999999988775 1245666633
No 413
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.61 E-value=0.0097 Score=58.12 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=29.1
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.++..|.++|..||||||+++.|+..+ | .-|+|+|
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~L---g--~~~id~D 165 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARL---G--VPFVELN 165 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHc---C--CCEEeHH
Confidence 357899999999999999999999887 3 3355877
No 414
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.61 E-value=0.0084 Score=55.76 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|.++.|+|+.|+|||||.+.|+...--...++.+
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 44 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL 44 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 47799999999999999999998865333344544
No 415
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.60 E-value=0.0087 Score=55.86 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|.++.|+|+.|+|||||.|.|+..+--...++.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII 62 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 57899999999999999999999865333334444
No 416
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.60 E-value=0.0086 Score=56.70 Aligned_cols=35 Identities=17% Similarity=0.352 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|.++.|+|+.|+|||||.+.|+..+--...++.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 47899999999999999999999865333345544
No 417
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.01 Score=55.08 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|+|||||.+.|+..+--...+|.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~ 60 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE
Confidence 47899999999999999999999865322334433
No 418
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.59 E-value=0.01 Score=54.52 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|+|||||++.|+...
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 47899999999999999999998764
No 419
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.59 E-value=0.011 Score=53.83 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.++.|+|+.|+|||||++.|+...
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999998864
No 420
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=95.58 E-value=0.011 Score=50.82 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
+|+|+|+.++|||||++.|.+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLING 22 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999887764
No 421
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.58 E-value=0.01 Score=55.23 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||.+.|+..+--...++.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 62 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILL 62 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEE
Confidence 47899999999999999999999875333334444
No 422
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.58 E-value=0.0094 Score=55.73 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|+|||||.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999999998754
No 423
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.57 E-value=0.019 Score=50.85 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+.+++++|+.|+|||||...|....
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4789999999999999988887764
No 424
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.57 E-value=0.0031 Score=57.44 Aligned_cols=37 Identities=27% Similarity=0.500 Sum_probs=28.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
...++|.|+.|+|||||++.+++.+-+.+..+.|++.
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~ 56 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDF 56 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCC
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEec
Confidence 5689999999999999999999998555545555554
No 425
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.56 E-value=0.011 Score=50.87 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
+|+|+|+.|+|||||.+.|++.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999988753
No 426
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.55 E-value=0.02 Score=59.41 Aligned_cols=67 Identities=16% Similarity=0.209 Sum_probs=44.3
Q ss_pred CCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceE
Q 017141 13 PAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFL 86 (376)
Q Consensus 13 ~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~v 86 (376)
..+.++++=.+.+..+... +...|+|+|+.||||||+.+.+++++...+.++..++= | .|+..||..
T Consensus 222 ~~Lg~~~~~~~~l~~~~~~----~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiED-p--vE~~~~~~~ 288 (486)
T TIGR02533 222 ETLGMSPELLSRFERLIRR----PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVED-P--VEYQIEGIG 288 (486)
T ss_pred HHcCCCHHHHHHHHHHHhc----CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcC-C--eeeecCCCc
Confidence 4455666545555544421 23579999999999999999999988655556666543 3 355556643
No 427
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.55 E-value=0.01 Score=52.41 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=24.1
Q ss_pred EcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 43 CGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 43 ~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
+|+.||||||+++.|++.+ ...++|.|.-
T Consensus 1 ~G~sGsGKSTla~~la~~l-----~~~~~~~d~~ 29 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL-----HAAFLDGDFL 29 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh-----CCeEEeCccC
Confidence 4999999999999999987 3467788743
No 428
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.55 E-value=0.011 Score=55.07 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|+|||||++.|+..+--...++.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLV 61 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 47899999999999999999999876333344544
No 429
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.54 E-value=0.017 Score=51.59 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~lDlD 74 (376)
..+|++||.|+|||.+++.|+.++. ........+|+-
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s 41 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMS 41 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhh
Confidence 4799999999999999999999986 444556666654
No 430
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.54 E-value=0.0093 Score=55.93 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|.++.|+|+.|+|||||.+.|+..+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999999998764
No 431
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.0094 Score=53.11 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.++.|+|+.|+|||||.+.|+..+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999998654
No 432
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.53 E-value=0.0098 Score=54.16 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
++..+.|+|+.|+|||||.+.|+..+-....++.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 59 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF 59 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47899999999999999999998754323334443
No 433
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.53 E-value=0.0094 Score=54.60 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
++..+.|+|+.|+|||||.|.|+..+--...++.+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 57 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV 57 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 47899999999999999999999865333444544
No 434
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=95.53 E-value=0.2 Score=47.50 Aligned_cols=43 Identities=12% Similarity=0.089 Sum_probs=29.4
Q ss_pred ChhHHHHHHHhhccC-CCCCCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 18 PREWSDAADSIAYDS-NTSPPPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 18 p~~W~~~~~~i~~~~-~~~~~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
.+.+..+.+..+... ......+|+|+|..|+|||||...|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 11 DAAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred HHHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 345666665443211 1224689999999999999998877764
No 435
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.52 E-value=0.0099 Score=54.94 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|+|||||.+.|+..+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999999864
No 436
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.51 E-value=0.0094 Score=56.61 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~ 69 (376)
+|.++.|+|+.|+|||||.+.|+..+--...++.
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~ 70 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL 70 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 4789999999999999999999986533333443
No 437
>PRK12338 hypothetical protein; Provisional
Probab=95.51 E-value=0.015 Score=56.98 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+..|+|+|.+||||||+|+.|+.++
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 5689999999999999999999986
No 438
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=95.51 E-value=0.02 Score=52.01 Aligned_cols=82 Identities=23% Similarity=0.356 Sum_probs=48.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDV 115 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~ 115 (376)
+-++|+|.+|||||++.+.++-.++.. ...+-+.=+|+...+|. .+.. + ++. +..
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~~l~--------~~~~----~--~~~---------~~~ 95 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGSDLA--------PLAD----L--PHV---------AAV 95 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSSCCG--------GGTT-------TTB---------SS-
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCccccc--------hhhh----h--hhh---------ccc
Confidence 479999999999999999999999873 23344444444443421 1111 1 111 112
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHhhhc
Q 017141 116 SSKRDPTAYLKYITTLYDYYRKEYYMF 142 (376)
Q Consensus 116 sp~~~~~~y~~~v~~L~~~~~~~~~~~ 142 (376)
...++++.....+..|.+..++|...+
T Consensus 96 ~~~~~~~~~~~~l~~l~~em~~R~~~l 122 (205)
T PF01580_consen 96 AVATDPEEILRLLEELVEEMERRQALL 122 (205)
T ss_dssp S-B-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 234577888888888888888876443
No 439
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.51 E-value=0.009 Score=56.19 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|+|||||++.|+...
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999999864
No 440
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=95.51 E-value=0.014 Score=53.36 Aligned_cols=31 Identities=23% Similarity=0.234 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.|.|+|+.||||||++++|.++ ...++|+|-
T Consensus 3 ~igitG~igsGKst~~~~l~~~------g~~vid~D~ 33 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSSE------GFLIVDADQ 33 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHC------CCeEEeCcH
Confidence 6899999999999999999862 346789884
No 441
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.51 E-value=0.017 Score=56.45 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=32.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc------CCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR------YKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~------~~~v~~lDlD 74 (376)
.+..+.|+|+.|+|||+||..++-..... +.+|+|+|++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te 145 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTE 145 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCC
Confidence 36789999999999999999998665432 3489999986
No 442
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.50 E-value=0.0096 Score=53.91 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.++.|+|+.|+|||||.+.|+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998854
No 443
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.49 E-value=0.0099 Score=55.19 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|.++.|+|+.|+|||||+|.|+-..-....++.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 58 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL 58 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 47899999999999999999998754333445554
No 444
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=95.48 E-value=0.012 Score=50.48 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N 59 (376)
+|+|+|+.|+|||||++.|++
T Consensus 2 ki~~vG~~~vGKTsli~~l~~ 22 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCE 22 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999988875
No 445
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.48 E-value=0.013 Score=53.92 Aligned_cols=34 Identities=24% Similarity=0.100 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~ 69 (376)
++..+.++|++|+|||||.++|+...--....+.
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~ 45 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFI 45 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEE
Confidence 4679999999999999999999986533333443
No 446
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.47 E-value=0.014 Score=50.42 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|+|||||.+.|+...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 47799999999999999999997753
No 447
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.47 E-value=0.014 Score=52.81 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
.+..|+|+||.||||||+++.|++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3678999999999999999999875
No 448
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.47 E-value=0.011 Score=54.81 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|||||||+|.|+...
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999999864
No 449
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.46 E-value=0.013 Score=54.60 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
+|.++.|+|+.|||||||.|.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4779999999999999999999875
No 450
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=95.46 E-value=0.011 Score=53.29 Aligned_cols=40 Identities=30% Similarity=0.421 Sum_probs=30.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCc
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG 84 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG 84 (376)
.|-|+|+-||||||++++|.++ ...++|+|-=--++.-||
T Consensus 2 iIglTG~igsGKStv~~~l~~~------G~~vidaD~i~~~l~~~~ 41 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAEL------GFPVIDADEIAHELYEPG 41 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHHT------T-EEEEHHHHHHHCTSCT
T ss_pred EEEEECCCcCCHHHHHHHHHHC------CCCEECccHHHHHHhhcC
Confidence 5789999999999999999872 678899985444443333
No 451
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.46 E-value=0.011 Score=54.48 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~ 69 (376)
+|.++.|+|+.|+|||||.+.|+..+--...++.
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~ 66 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL 66 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence 4789999999999999999999876432333443
No 452
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.45 E-value=0.013 Score=52.95 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
++.++.|+|+.|+|||||.+.|+..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999999864
No 453
>PRK13975 thymidylate kinase; Provisional
Probab=95.44 E-value=0.015 Score=52.30 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=22.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
..|.|.|..||||||+++.|+.++
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999987
No 454
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=95.44 E-value=0.017 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
-++|.|+|+.|||||||.+.|++.
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 479999999999999999888775
No 455
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.44 E-value=0.012 Score=53.41 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|.++.|+|+.|+|||||+|.++...
T Consensus 30 ~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 30 KGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999999998854
No 456
>PRK10908 cell division protein FtsE; Provisional
Probab=95.44 E-value=0.014 Score=53.77 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.++.|+|+.|+|||||.+.|+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998654
No 457
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=95.44 E-value=0.02 Score=50.85 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=26.2
Q ss_pred HHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 017141 22 SDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 22 ~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.++++.+.. .....+|+++|+.|||||||.+.|.+
T Consensus 7 ~~~~~~~~~---~~~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 7 YNVLSSLGL---YNKEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred HHHHHHhhc---ccCCCEEEEECCCCCCHHHHHHHHhc
Confidence 445665532 23467899999999999999988765
No 458
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=95.43 E-value=0.013 Score=53.37 Aligned_cols=39 Identities=23% Similarity=0.209 Sum_probs=29.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCc
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG 84 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG 84 (376)
|.|+|+.||||||++++|.+. ...++|+|.=--++.-||
T Consensus 2 i~itG~~gsGKst~~~~l~~~------g~~~i~~D~i~~~~~~~~ 40 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL------GAFGISADRLAKRYTEPD 40 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC------CCEEEecchHHHHHHhcC
Confidence 679999999999999988653 366789886544544444
No 459
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.43 E-value=0.011 Score=55.71 Aligned_cols=26 Identities=38% Similarity=0.505 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.++.|+|+.|+|||||.+.|+..+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999998865
No 460
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.43 E-value=0.01 Score=55.42 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|.++.|+|+.|+|||||.+.|+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999998754
No 461
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.42 E-value=0.012 Score=50.31 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 017141 40 AFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~l 61 (376)
|.|+|++||||||+++.|+..+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 6889999999999999998764
No 462
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.41 E-value=0.013 Score=54.06 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|+|||||++.|+..+
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 47899999999999999999998754
No 463
>PRK14526 adenylate kinase; Provisional
Probab=95.41 E-value=0.015 Score=53.72 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+++|+|+.||||||+++.|+..+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 464
>PRK10646 ADP-binding protein; Provisional
Probab=95.40 E-value=0.023 Score=49.86 Aligned_cols=43 Identities=26% Similarity=0.371 Sum_probs=34.0
Q ss_pred CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
-+++..++.+.|+. ...++.+|++.|.=|+|||||+|-++..+
T Consensus 10 s~~~t~~l~~~la~--~l~~g~vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 10 DEQATLDLGARVAK--ACDGATVIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred CHHHHHHHHHHHHH--hCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34567777777763 22346789999999999999999999986
No 465
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.40 E-value=0.015 Score=54.73 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLL 62 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll 62 (376)
+|-.|.|+|++|||||||.|.++-..-
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 477999999999999999999887543
No 466
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.39 E-value=0.015 Score=53.31 Aligned_cols=46 Identities=26% Similarity=0.324 Sum_probs=34.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEE
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLT 89 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~ 89 (376)
..|-++|..||||||+++++.++ ...++|+|----++.-||.-.+.
T Consensus 3 ~iIglTG~igsGKStva~~~~~~------G~~vidaD~v~r~~~~~~~~~~~ 48 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAEL------GFPVIDADDVAREVVEPGGEALQ 48 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHHc------CCeEEEccHHHHHHHhccchHHH
Confidence 57899999999999999998883 56788888655555555544433
No 467
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=95.39 E-value=0.016 Score=54.83 Aligned_cols=42 Identities=31% Similarity=0.494 Sum_probs=33.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCce
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGF 85 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~ 85 (376)
+|-|+|+-||||||++++|.+.+ ...++|+|-=--++--||.
T Consensus 3 iIGlTGgIgSGKStVs~~L~~~~-----G~~viDaD~iar~l~~~~~ 44 (244)
T PTZ00451 3 LIGLTGGIACGKSTVSRILREEH-----HIEVIDADLVVRELQAPNM 44 (244)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-----CCeEEehHHHHHHHHcCCh
Confidence 68899999999999999998853 4567999966555555554
No 468
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.38 E-value=0.012 Score=53.85 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|.++.|+|+.|+|||||.+.|+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999999854
No 469
>PRK07429 phosphoribulokinase; Provisional
Probab=95.38 E-value=0.019 Score=56.58 Aligned_cols=26 Identities=42% Similarity=0.747 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+..|-|.|+.|||||||++.|+..+
T Consensus 7 ~~~IIgI~G~SGSGKSTla~~L~~ll 32 (327)
T PRK07429 7 RPVLLGVAGDSGCGKTTFLRGLADLL 32 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHhHh
Confidence 35689999999999999999999776
No 470
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.37 E-value=0.02 Score=60.28 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
...|.|+|+.|||||||++.|++.+
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhC
Confidence 5689999999999999999998864
No 471
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.37 E-value=0.011 Score=54.22 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
++..+.|+|+.|+|||||.+.|+...--...++.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 64 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATV 64 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 47799999999999999999998754222334443
No 472
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=95.37 E-value=0.013 Score=51.11 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+|+|+|.+|+|||||+..+++
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~ 26 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTD 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4899999999999999998865
No 473
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.36 E-value=0.025 Score=53.76 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
+..+++.|+.|+|||.|+-.++|.+++.|.+|.|+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 567999999999999999999999998888888854
No 474
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.36 E-value=0.011 Score=56.86 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||+|.|+..+--...++.+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~ 66 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV 66 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 47799999999999999999999865433445555
No 475
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=95.35 E-value=0.025 Score=56.15 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=40.9
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcC---CcEEEEcCCCCCCCCC
Q 017141 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRY---KKVAYLDTDVGQPEFT 81 (376)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~---~~v~~lDlD~GQ~~~~ 81 (376)
.|+++...+........-.-|++.|++|+||||++|.+.+++-... ..++ ++||..|++-
T Consensus 21 Gq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf--~~~p~~p~~~ 83 (350)
T CHL00081 21 GQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPF--NSHPSDPELM 83 (350)
T ss_pred ChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCC--CCCCCChhhh
Confidence 5777766665433222234699999999999999999999987532 1222 3777777643
No 476
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.34 E-value=0.011 Score=54.80 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|||||||.+.|+...
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999999754
No 477
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.013 Score=50.96 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|+|||||.+.|+..+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999997643
No 478
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.33 E-value=0.013 Score=54.58 Aligned_cols=39 Identities=21% Similarity=0.161 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.|-.|.|+||.|||||||...+..-.--....+.+-..|
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d 68 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEE
Confidence 477999999999999999998876543333444444333
No 479
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.33 E-value=0.0084 Score=56.97 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=27.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|.++.|+|+.|+|||||++.|+...--...++.+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 70 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 57899999999999999999998754223344544
No 480
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=95.33 E-value=0.015 Score=50.70 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+|+|+|++|+|||||...+++
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~ 25 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSE 25 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 5899999999999999888765
No 481
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.33 E-value=0.011 Score=55.50 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~ 69 (376)
++.++.|+|+.|+|||||.|.|+..+--....+.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQ 58 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 4789999999999999999999876432333343
No 482
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.33 E-value=0.023 Score=54.82 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=25.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRY 65 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~ 65 (376)
+..+++.|++|+||||+|+.++..+...+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g 86 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLG 86 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 44799999999999999999999987654
No 483
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.33 E-value=0.012 Score=56.68 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=27.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|.++.|+|+.|||||||+|.|+..+--....+.+
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 70 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV 70 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 47799999999999999999999865333344544
No 484
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.32 E-value=0.015 Score=54.63 Aligned_cols=25 Identities=32% Similarity=0.620 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
+|..+.|+|+.|+|||||.|.|+..
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4779999999999999999999875
No 485
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=95.32 E-value=0.018 Score=54.54 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR 64 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~ 64 (376)
.|.+++|.|+.|+||||+++.++|.+-..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 48899999999999999999999987543
No 486
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=95.32 E-value=0.027 Score=53.65 Aligned_cols=41 Identities=34% Similarity=0.476 Sum_probs=35.8
Q ss_pred EEEEE-cCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 39 IAFIC-GAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 39 ~vlV~-G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
+|+|. |--|+||||++..|+-.|.+.+.+|.++|.|..-|.
T Consensus 49 iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPS 90 (300)
T KOG3022|consen 49 IILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPS 90 (300)
T ss_pred EEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCC
Confidence 45554 555999999999999999999999999999998876
No 487
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=95.32 E-value=0.014 Score=50.14 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N 59 (376)
+|+|+|+.|+|||||...|++
T Consensus 2 ki~v~G~~~~GKSsli~~l~~ 22 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTD 22 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999988765
No 488
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=95.32 E-value=0.01 Score=57.67 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
+|.++.++|+.|+|||||.|.|+..+--...++.+-.-|+
T Consensus 29 ~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 68 (303)
T TIGR01288 29 RGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPV 68 (303)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 4789999999999999999999986533334555433333
No 489
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.31 E-value=0.2 Score=49.97 Aligned_cols=56 Identities=21% Similarity=0.289 Sum_probs=37.9
Q ss_pred CCCCCCCCCccCChhHHHHH------HHhh---ccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141 6 PQTENPSPAIYIPREWSDAA------DSIA---YDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ 63 (376)
Q Consensus 6 ~~~~~~~~~~~ip~~W~~~~------~~i~---~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~ 63 (376)
++.++...+..-|.++.+++ +.+. ..+ .-+.-+++.|++|+||+|+++.+++.++.
T Consensus 7 ~~~~~~~~~~~~P~~~~~l~Gh~~a~~~L~~a~~~g--rl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 7 PEQHDDLDGVPSPSENTRLFGHEEAEAFLAQAYREG--KLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred ccccccccCCCCCCchhhccCcHHHHHHHHHHHHcC--CCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 44455555666777776432 2222 112 12446999999999999999999999875
No 490
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.31 E-value=0.028 Score=55.21 Aligned_cols=42 Identities=31% Similarity=0.339 Sum_probs=37.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
..++++|--|+||||.+--++=++.+.|+++.++-.||.++-
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL 44 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSL 44 (322)
T ss_pred EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCch
Confidence 356777777999999999999999999999999999998764
No 491
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.30 E-value=0.011 Score=58.02 Aligned_cols=42 Identities=26% Similarity=0.468 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
+|..+.|+|+.|||||||.+.|+..+--...+|.+-+-|+++
T Consensus 51 ~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~ 92 (320)
T PRK13631 51 KNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGD 92 (320)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccc
Confidence 478999999999999999999998654444566665444443
No 492
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.30 E-value=0.012 Score=55.17 Aligned_cols=41 Identities=20% Similarity=0.214 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
++..++|+|++|||||||.+.|.--+......|.+=+.|..
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~ 69 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTS 69 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeecc
Confidence 47799999999999999999888776666666655444444
No 493
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.30 E-value=0.027 Score=50.11 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=33.5
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
...++++.+..-.. .+..|||.|+.|+||+.+||.+-++-.++...-..|||
T Consensus 7 ~m~~~~~~~~~~a~--~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc 58 (168)
T PF00158_consen 7 AMKRLREQAKRAAS--SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNC 58 (168)
T ss_dssp HHHHHHHHHHHHTT--STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEET
T ss_pred HHHHHHHHHHHHhC--CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEeh
Confidence 34455554443221 13579999999999999999999966555444444555
No 494
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.015 Score=60.07 Aligned_cols=37 Identities=27% Similarity=0.255 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCc
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG 84 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG 84 (376)
+|.+|.|+|++||||||+...|+.. .||.|++++.-|
T Consensus 363 ~GEkvAIlG~SGsGKSTllqLl~~~------------~~~~~G~i~~~g 399 (573)
T COG4987 363 QGEKVAILGRSGSGKSTLLQLLAGA------------WDPQQGSITLNG 399 (573)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhc------------cCCCCCeeeECC
Confidence 5889999999999999999988864 378888877766
No 495
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=95.29 E-value=0.012 Score=55.90 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|+|||||.+.|+..+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T TIGR02769 36 EGETVGLLGRSGCGKSTLARLLLGLE 61 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999999864
No 496
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.29 E-value=0.012 Score=56.08 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|.++.|+|+.|+|||||.+.|+..+--...++.+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~ 68 (271)
T PRK13632 34 EGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKI 68 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 47899999999999999999998865333334444
No 497
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=95.29 E-value=0.017 Score=54.23 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.|-+|=|+|.+|||||||.|.|+.-.
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCcc
Confidence 47899999999999999999998754
No 498
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.29 E-value=0.021 Score=58.58 Aligned_cols=37 Identities=30% Similarity=0.486 Sum_probs=32.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD 74 (376)
..+++.|+.|+|||+|++.++|.+.+. +.+|.|++++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~ 187 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE 187 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 458999999999999999999999887 5678888764
No 499
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.28 E-value=0.011 Score=55.56 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|+|||||.+.|+...--....+.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 64 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL 64 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEE
Confidence 47899999999999999999999864323334443
No 500
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=95.28 E-value=0.015 Score=50.45 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+|+|+|++|+|||||...|++
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~ 24 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFAD 24 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999877764
Done!