Query 017141
Match_columns 376
No_of_seqs 166 out of 989
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 09:36:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2npi_A Protein CLP1; CLP1-PCF1 99.8 3E-19 1E-23 181.1 23.0 288 36-355 137-457 (460)
2 3bfv_A CAPA1, CAPB2, membrane 98.2 1.4E-05 5E-10 74.9 13.9 44 36-79 81-125 (271)
3 3dm5_A SRP54, signal recogniti 98.2 3.8E-06 1.3E-10 84.4 10.0 121 37-189 100-222 (443)
4 3la6_A Tyrosine-protein kinase 98.2 1.5E-05 5.3E-10 75.4 12.5 45 35-79 90-135 (286)
5 3kl4_A SRP54, signal recogniti 98.1 3.7E-06 1.3E-10 84.3 7.1 41 36-76 96-136 (433)
6 1hyq_A MIND, cell division inh 98.1 1.4E-05 4.8E-10 73.7 9.8 42 38-79 3-45 (263)
7 2j37_W Signal recognition part 98.1 2.9E-05 1E-09 79.2 12.8 41 37-77 101-141 (504)
8 3q9l_A Septum site-determining 97.9 1.8E-05 6E-10 72.6 6.3 42 38-79 3-45 (260)
9 1g3q_A MIND ATPase, cell divis 97.8 2E-05 6.8E-10 71.3 5.3 42 38-79 3-45 (237)
10 3cio_A ETK, tyrosine-protein k 97.7 6.2E-05 2.1E-09 71.6 7.8 44 36-79 103-147 (299)
11 3ea0_A ATPase, para family; al 97.7 3.1E-05 1E-09 70.4 5.3 43 37-79 4-48 (245)
12 1xjc_A MOBB protein homolog; s 97.7 4.4E-05 1.5E-09 66.8 6.1 43 37-79 4-46 (169)
13 2xj4_A MIPZ; replication, cell 97.7 3.8E-05 1.3E-09 72.2 5.7 43 38-80 5-48 (286)
14 1yrb_A ATP(GTP)binding protein 97.7 4.7E-05 1.6E-09 69.9 6.1 43 37-80 14-56 (262)
15 3k9g_A PF-32 protein; ssgcid, 97.7 2.4E-05 8.1E-10 72.5 4.0 42 36-78 26-68 (267)
16 2px0_A Flagellar biosynthesis 97.6 5.8E-05 2E-09 71.8 6.2 41 36-76 104-145 (296)
17 2ph1_A Nucleotide-binding prot 97.6 7.9E-05 2.7E-09 69.0 6.9 43 37-79 18-61 (262)
18 1wcv_1 SOJ, segregation protei 97.6 4.7E-05 1.6E-09 70.3 5.1 41 37-78 6-47 (257)
19 1vma_A Cell division protein F 97.6 5.6E-05 1.9E-09 72.3 5.7 42 36-77 103-144 (306)
20 1zu4_A FTSY; GTPase, signal re 97.6 6.5E-05 2.2E-09 72.3 6.1 42 36-77 104-145 (320)
21 2yvu_A Probable adenylyl-sulfa 97.6 5E-05 1.7E-09 66.3 4.8 39 36-74 12-50 (186)
22 4dzz_A Plasmid partitioning pr 97.6 5.2E-05 1.8E-09 66.8 4.8 40 38-77 2-42 (206)
23 3end_A Light-independent proto 97.6 8E-05 2.7E-09 70.5 6.3 42 36-77 40-81 (307)
24 3p32_A Probable GTPase RV1496/ 97.6 5.9E-05 2E-09 73.4 5.5 44 36-79 78-121 (355)
25 1np6_A Molybdopterin-guanine d 97.5 9.2E-05 3.1E-09 65.0 5.8 48 37-84 6-53 (174)
26 3kjh_A CO dehydrogenase/acetyl 97.5 3.4E-05 1.2E-09 69.9 3.1 40 39-79 2-41 (254)
27 2v3c_C SRP54, signal recogniti 97.5 5.9E-05 2E-09 75.6 5.1 43 37-79 99-141 (432)
28 3uie_A Adenylyl-sulfate kinase 97.5 7.3E-05 2.5E-09 66.3 4.8 39 36-74 24-62 (200)
29 3zq6_A Putative arsenical pump 97.5 6.9E-05 2.4E-09 72.0 5.0 41 38-79 14-55 (324)
30 2xxa_A Signal recognition part 97.5 0.00011 3.8E-09 73.6 6.3 42 37-78 100-142 (433)
31 1rz3_A Hypothetical protein rb 97.5 0.00018 6.2E-09 63.9 7.0 41 36-76 21-61 (201)
32 1j8m_F SRP54, signal recogniti 97.5 0.00011 3.6E-09 70.1 5.6 42 37-78 98-139 (297)
33 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 0.00011 3.8E-09 68.1 5.4 38 37-74 4-41 (260)
34 3ec2_A DNA replication protein 97.5 7.3E-05 2.5E-09 64.9 3.9 36 36-71 37-73 (180)
35 3c8u_A Fructokinase; YP_612366 97.4 0.0002 6.9E-09 63.9 6.9 40 35-74 20-59 (208)
36 3cwq_A Para family chromosome 97.4 9.9E-05 3.4E-09 66.2 4.7 38 39-77 2-40 (209)
37 3fkq_A NTRC-like two-domain pr 97.4 0.00014 4.7E-09 71.2 6.0 43 36-79 142-185 (373)
38 1ls1_A Signal recognition part 97.4 0.00013 4.5E-09 69.3 5.6 43 36-78 97-139 (295)
39 3vaa_A Shikimate kinase, SK; s 97.4 6.9E-05 2.4E-09 66.4 3.4 50 18-74 8-57 (199)
40 3ug7_A Arsenical pump-driving 97.4 0.00018 6.2E-09 69.8 6.5 42 37-79 25-67 (349)
41 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00019 6.7E-09 63.9 6.2 52 24-76 11-62 (235)
42 1cp2_A CP2, nitrogenase iron p 97.4 0.00014 4.7E-09 67.2 5.3 42 38-79 2-43 (269)
43 1rj9_A FTSY, signal recognitio 97.4 0.00018 6E-09 68.7 6.2 42 36-77 101-142 (304)
44 3e70_C DPA, signal recognition 97.4 0.00015 5.1E-09 70.0 5.7 42 36-77 128-169 (328)
45 3bos_A Putative DNA replicatio 97.4 0.0002 6.8E-09 64.1 5.8 39 36-74 51-89 (242)
46 2afh_E Nitrogenase iron protei 97.4 0.00018 6.2E-09 67.4 5.6 42 38-79 3-44 (289)
47 3b9q_A Chloroplast SRP recepto 97.4 0.00021 7.2E-09 68.1 6.1 41 36-76 99-139 (302)
48 1nks_A Adenylate kinase; therm 97.3 0.00012 4.1E-09 63.5 4.0 36 38-73 2-37 (194)
49 1jbk_A CLPB protein; beta barr 97.3 0.00035 1.2E-08 59.7 6.9 42 18-63 28-69 (195)
50 1kag_A SKI, shikimate kinase I 97.3 8.7E-05 3E-09 63.7 2.9 33 37-74 4-36 (173)
51 2kjq_A DNAA-related protein; s 97.3 0.00039 1.3E-08 59.1 6.9 52 19-74 22-73 (149)
52 2pez_A Bifunctional 3'-phospho 97.3 0.00017 6E-09 62.4 4.8 39 36-74 4-42 (179)
53 1kht_A Adenylate kinase; phosp 97.3 0.00015 5E-09 63.0 4.2 37 37-73 3-39 (192)
54 2ffh_A Protein (FFH); SRP54, s 97.3 0.00018 6.3E-09 71.8 5.3 43 36-78 97-139 (425)
55 1a7j_A Phosphoribulokinase; tr 97.3 0.00015 5.2E-09 68.7 4.2 40 36-75 4-43 (290)
56 2p67_A LAO/AO transport system 97.3 0.00025 8.6E-09 68.5 5.8 44 36-79 55-98 (341)
57 2og2_A Putative signal recogni 97.3 0.00029 9.9E-09 68.9 6.1 41 36-76 156-196 (359)
58 2dr3_A UPF0273 protein PH0284; 97.3 0.00034 1.1E-08 63.2 6.1 41 36-76 22-62 (247)
59 2yhs_A FTSY, cell division pro 97.2 0.0003 1E-08 71.4 6.2 41 36-76 292-332 (503)
60 1m7g_A Adenylylsulfate kinase; 97.2 0.00023 7.8E-09 63.6 4.7 39 36-74 24-63 (211)
61 3kb2_A SPBC2 prophage-derived 97.2 0.00021 7.1E-09 60.9 4.2 32 38-74 2-33 (173)
62 3t61_A Gluconokinase; PSI-biol 97.2 0.00019 6.4E-09 63.5 4.0 34 37-75 18-51 (202)
63 2iyv_A Shikimate kinase, SK; t 97.2 0.00012 4E-09 63.6 2.6 32 38-74 3-34 (184)
64 4eun_A Thermoresistant glucoki 97.2 0.00025 8.5E-09 62.8 4.8 35 36-75 28-62 (200)
65 2w58_A DNAI, primosome compone 97.2 0.00028 9.5E-09 62.2 5.0 36 38-73 55-90 (202)
66 1knq_A Gluconate kinase; ALFA/ 97.2 0.00023 8E-09 61.2 4.4 34 36-74 7-40 (175)
67 2ehv_A Hypothetical protein PH 97.2 0.00041 1.4E-08 62.7 6.2 40 36-75 29-69 (251)
68 3asz_A Uridine kinase; cytidin 97.2 0.00027 9.3E-09 62.7 4.7 38 36-76 5-42 (211)
69 3ez2_A Plasmid partition prote 97.2 0.00029 9.8E-09 69.3 5.3 43 36-79 107-156 (398)
70 2p65_A Hypothetical protein PF 97.2 0.00043 1.5E-08 59.1 5.7 41 19-63 29-69 (187)
71 2woo_A ATPase GET3; tail-ancho 97.2 0.00037 1.3E-08 67.1 5.5 39 38-76 19-58 (329)
72 1y63_A LMAJ004144AAA protein; 97.2 0.00025 8.5E-09 62.0 3.9 35 36-74 9-43 (184)
73 3fwy_A Light-independent proto 97.1 0.00047 1.6E-08 66.1 6.1 42 37-78 48-89 (314)
74 2cvh_A DNA repair and recombin 97.1 0.00047 1.6E-08 61.1 5.6 37 36-75 19-55 (220)
75 3trf_A Shikimate kinase, SK; a 97.1 0.00021 7.1E-09 62.0 3.2 33 37-74 5-37 (185)
76 1zp6_A Hypothetical protein AT 97.1 0.00028 9.6E-09 61.4 4.1 36 36-74 8-43 (191)
77 1via_A Shikimate kinase; struc 97.1 0.00021 7.3E-09 61.6 3.3 32 38-74 5-36 (175)
78 2www_A Methylmalonic aciduria 97.1 0.00049 1.7E-08 66.8 6.2 44 36-79 73-116 (349)
79 2r8r_A Sensor protein; KDPD, P 97.1 0.00062 2.1E-08 62.3 6.3 39 37-75 6-44 (228)
80 3cm0_A Adenylate kinase; ATP-b 97.1 0.00023 7.8E-09 61.7 3.2 33 37-74 4-36 (186)
81 2wsm_A Hydrogenase expression/ 97.1 0.00042 1.5E-08 61.6 5.1 40 37-77 30-69 (221)
82 3pg5_A Uncharacterized protein 97.1 0.00029 9.8E-09 68.7 4.2 42 38-79 2-44 (361)
83 3ez9_A Para; DNA binding, wing 97.1 0.00022 7.4E-09 70.4 3.3 43 36-79 110-159 (403)
84 2c95_A Adenylate kinase 1; tra 97.1 0.00031 1.1E-08 61.2 3.9 33 37-74 9-41 (196)
85 1tev_A UMP-CMP kinase; ploop, 97.1 0.00029 9.8E-09 61.2 3.6 33 37-74 3-35 (196)
86 2qm8_A GTPase/ATPase; G protei 97.1 0.0008 2.7E-08 65.0 7.0 53 23-77 43-95 (337)
87 2woj_A ATPase GET3; tail-ancho 97.1 0.00044 1.5E-08 67.3 5.1 41 38-79 18-61 (354)
88 3n70_A Transport activator; si 97.1 0.00035 1.2E-08 58.7 3.8 48 18-67 7-54 (145)
89 2bwj_A Adenylate kinase 5; pho 97.1 0.00032 1.1E-08 61.3 3.7 33 37-74 12-44 (199)
90 2eyu_A Twitching motility prot 97.1 0.00085 2.9E-08 62.5 6.7 41 36-76 24-65 (261)
91 1ly1_A Polynucleotide kinase; 97.0 0.00039 1.3E-08 59.6 4.1 33 38-74 3-35 (181)
92 1qhx_A CPT, protein (chloramph 97.0 0.00035 1.2E-08 60.1 3.8 35 37-74 3-37 (178)
93 2oze_A ORF delta'; para, walke 97.0 0.00046 1.6E-08 64.7 4.9 42 37-78 34-78 (298)
94 2plr_A DTMP kinase, probable t 97.0 0.0006 2.1E-08 60.0 5.4 27 37-63 4-30 (213)
95 2pbr_A DTMP kinase, thymidylat 97.0 0.00069 2.3E-08 58.7 5.6 34 39-72 2-35 (195)
96 1sq5_A Pantothenate kinase; P- 97.0 0.00047 1.6E-08 65.6 4.8 39 36-74 79-119 (308)
97 1aky_A Adenylate kinase; ATP:A 97.0 0.00039 1.3E-08 62.3 4.0 33 36-73 3-35 (220)
98 3tqc_A Pantothenate kinase; bi 97.0 0.00095 3.2E-08 64.2 6.9 39 36-74 91-131 (321)
99 1e6c_A Shikimate kinase; phosp 97.0 0.00033 1.1E-08 59.9 3.3 32 38-74 3-34 (173)
100 3iij_A Coilin-interacting nucl 97.0 0.00036 1.2E-08 60.3 3.5 33 37-74 11-43 (180)
101 1uj2_A Uridine-cytidine kinase 97.0 0.00042 1.4E-08 63.7 4.1 38 37-74 22-64 (252)
102 2rhm_A Putative kinase; P-loop 97.0 0.00031 1.1E-08 61.0 3.0 26 36-61 4-29 (193)
103 2pt5_A Shikimate kinase, SK; a 97.0 0.00035 1.2E-08 59.5 3.1 31 39-74 2-32 (168)
104 1nn5_A Similar to deoxythymidy 97.0 0.00093 3.2E-08 59.0 6.0 35 36-70 8-42 (215)
105 2hf9_A Probable hydrogenase ni 97.0 0.00032 1.1E-08 62.7 2.9 59 17-76 18-76 (226)
106 2p5t_B PEZT; postsegregational 97.0 0.00039 1.3E-08 64.1 3.5 56 17-75 7-67 (253)
107 1zuh_A Shikimate kinase; alpha 97.0 0.00038 1.3E-08 59.5 3.1 33 37-74 7-39 (168)
108 2grj_A Dephospho-COA kinase; T 96.9 0.00044 1.5E-08 61.5 3.5 34 37-75 12-45 (192)
109 3jvv_A Twitching mobility prot 96.9 0.0018 6.3E-08 63.0 8.1 63 4-75 98-161 (356)
110 2if2_A Dephospho-COA kinase; a 96.9 0.00037 1.3E-08 61.4 2.9 32 38-75 2-33 (204)
111 2chg_A Replication factor C sm 96.9 0.00071 2.4E-08 59.2 4.7 44 20-67 25-68 (226)
112 2cdn_A Adenylate kinase; phosp 96.9 0.00049 1.7E-08 60.7 3.5 33 37-74 20-52 (201)
113 2ze6_A Isopentenyl transferase 96.9 0.00056 1.9E-08 63.2 4.0 34 39-77 3-36 (253)
114 2z0h_A DTMP kinase, thymidylat 96.9 0.001 3.4E-08 58.0 5.5 33 39-71 2-34 (197)
115 1qf9_A UMP/CMP kinase, protein 96.9 0.00049 1.7E-08 59.6 3.4 33 37-74 6-38 (194)
116 3a8t_A Adenylate isopentenyltr 96.9 0.002 6.8E-08 62.3 7.9 85 37-137 40-128 (339)
117 2zr9_A Protein RECA, recombina 96.9 0.0011 3.6E-08 64.5 6.1 40 36-75 60-99 (349)
118 1ukz_A Uridylate kinase; trans 96.9 0.00044 1.5E-08 60.9 3.1 33 37-74 15-47 (203)
119 1cr0_A DNA primase/helicase; R 96.9 0.0013 4.3E-08 61.8 6.2 40 36-75 34-74 (296)
120 3hr8_A Protein RECA; alpha and 96.9 0.0011 3.6E-08 64.8 5.8 41 36-76 60-100 (356)
121 1cke_A CK, MSSA, protein (cyti 96.9 0.00061 2.1E-08 61.0 3.8 25 37-61 5-29 (227)
122 1gvn_B Zeta; postsegregational 96.8 0.00071 2.4E-08 63.8 4.3 36 36-74 32-67 (287)
123 2qt1_A Nicotinamide riboside k 96.8 0.00054 1.8E-08 60.7 3.3 36 36-75 20-55 (207)
124 1l8q_A Chromosomal replication 96.8 0.00075 2.6E-08 64.1 4.5 37 37-73 37-73 (324)
125 2wwf_A Thymidilate kinase, put 96.8 0.0013 4.6E-08 57.9 5.8 34 36-69 9-42 (212)
126 3lw7_A Adenylate kinase relate 96.8 0.00053 1.8E-08 58.0 3.0 20 38-57 2-21 (179)
127 2v54_A DTMP kinase, thymidylat 96.8 0.00076 2.6E-08 59.2 4.0 33 36-70 3-35 (204)
128 3fb4_A Adenylate kinase; psych 96.8 0.00055 1.9E-08 60.9 3.1 23 39-61 2-24 (216)
129 1ihu_A Arsenical pump-driving 96.8 0.0011 3.9E-08 68.5 5.8 42 37-79 8-49 (589)
130 1u94_A RECA protein, recombina 96.8 0.0015 5.2E-08 63.6 6.2 40 36-75 62-101 (356)
131 1zak_A Adenylate kinase; ATP:A 96.8 0.00058 2E-08 61.3 2.9 33 37-74 5-37 (222)
132 1zd8_A GTP:AMP phosphotransfer 96.8 0.00057 1.9E-08 61.6 2.9 33 37-74 7-39 (227)
133 1odf_A YGR205W, hypothetical 3 96.8 0.0014 4.8E-08 62.0 5.6 29 36-64 30-58 (290)
134 3tlx_A Adenylate kinase 2; str 96.8 0.00079 2.7E-08 61.7 3.8 33 36-73 28-60 (243)
135 2qby_A CDC6 homolog 1, cell di 96.7 0.002 6.8E-08 61.7 6.7 56 19-74 27-85 (386)
136 2f1r_A Molybdopterin-guanine d 96.7 0.001 3.5E-08 58.1 4.1 38 38-75 3-40 (171)
137 3exa_A TRNA delta(2)-isopenten 96.7 0.0047 1.6E-07 59.2 9.0 85 37-137 3-90 (322)
138 4a74_A DNA repair and recombin 96.7 0.001 3.6E-08 59.2 4.1 39 36-74 24-68 (231)
139 1uf9_A TT1252 protein; P-loop, 96.7 0.00061 2.1E-08 59.7 2.5 32 37-74 8-39 (203)
140 1n0w_A DNA repair protein RAD5 96.7 0.0013 4.4E-08 59.2 4.6 40 36-75 23-68 (243)
141 3eph_A TRNA isopentenyltransfe 96.7 0.0054 1.8E-07 60.7 9.3 97 37-161 2-101 (409)
142 3be4_A Adenylate kinase; malar 96.7 0.00092 3.1E-08 59.9 3.5 33 37-74 5-37 (217)
143 1xp8_A RECA protein, recombina 96.7 0.0019 6.6E-08 63.2 6.1 41 36-76 73-113 (366)
144 3dl0_A Adenylate kinase; phosp 96.7 0.00061 2.1E-08 60.7 2.3 31 39-74 2-32 (216)
145 2jeo_A Uridine-cytidine kinase 96.7 0.0014 4.8E-08 59.9 4.7 26 36-61 24-49 (245)
146 1ak2_A Adenylate kinase isoenz 96.7 0.0012 4E-08 59.9 4.1 33 37-74 16-48 (233)
147 2bjv_A PSP operon transcriptio 96.7 0.0015 5.1E-08 60.1 4.9 56 17-74 11-66 (265)
148 1kgd_A CASK, peripheral plasma 96.7 0.0013 4.3E-08 57.3 4.2 25 37-61 5-29 (180)
149 2v1u_A Cell division control p 96.6 0.0027 9.3E-08 60.8 6.8 56 19-74 26-87 (387)
150 2bbw_A Adenylate kinase 4, AK4 96.6 0.0013 4.5E-08 60.0 4.3 25 37-61 27-51 (246)
151 3tr0_A Guanylate kinase, GMP k 96.6 0.0014 4.7E-08 57.5 4.3 26 36-61 6-31 (205)
152 2gks_A Bifunctional SAT/APS ki 96.6 0.0018 6E-08 66.7 5.7 39 37-75 372-410 (546)
153 3foz_A TRNA delta(2)-isopenten 96.6 0.0063 2.2E-07 58.2 9.1 97 37-161 10-109 (316)
154 2qor_A Guanylate kinase; phosp 96.6 0.00094 3.2E-08 59.2 3.1 26 36-61 11-36 (204)
155 3iqw_A Tail-anchored protein t 96.6 0.0018 6.2E-08 62.5 5.3 40 38-77 17-56 (334)
156 3nwj_A ATSK2; P loop, shikimat 96.6 0.0011 3.6E-08 61.5 3.5 33 37-74 48-80 (250)
157 3ake_A Cytidylate kinase; CMP 96.6 0.001 3.5E-08 58.4 3.2 32 38-74 3-34 (208)
158 2qgz_A Helicase loader, putati 96.6 0.002 6.9E-08 61.3 5.4 37 37-73 152-189 (308)
159 2zts_A Putative uncharacterize 96.6 0.0028 9.6E-08 57.0 6.2 40 36-75 29-69 (251)
160 1gtv_A TMK, thymidylate kinase 96.6 0.00065 2.2E-08 60.1 1.8 34 39-72 2-35 (214)
161 2j41_A Guanylate kinase; GMP, 96.6 0.0015 5.1E-08 57.3 4.1 26 36-61 5-30 (207)
162 3zvl_A Bifunctional polynucleo 96.6 0.0053 1.8E-07 60.9 8.5 35 36-75 257-291 (416)
163 1vht_A Dephospho-COA kinase; s 96.5 0.0012 4.1E-08 58.9 3.2 32 37-74 4-35 (218)
164 4fcw_A Chaperone protein CLPB; 96.5 0.0017 6E-08 60.7 4.5 37 38-74 48-84 (311)
165 1e4v_A Adenylate kinase; trans 96.5 0.0011 3.8E-08 59.1 2.9 23 39-61 2-24 (214)
166 3io3_A DEHA2D07832P; chaperone 96.5 0.0025 8.7E-08 61.8 5.7 39 38-76 19-59 (348)
167 1lvg_A Guanylate kinase, GMP k 96.5 0.0014 4.9E-08 58.0 3.6 26 36-61 3-28 (198)
168 4e22_A Cytidylate kinase; P-lo 96.5 0.0014 4.6E-08 60.5 3.5 26 36-61 26-51 (252)
169 1m8p_A Sulfate adenylyltransfe 96.5 0.0018 6.1E-08 67.1 4.8 40 36-75 395-435 (573)
170 2bdt_A BH3686; alpha-beta prot 96.5 0.0013 4.4E-08 57.3 3.2 22 38-59 3-24 (189)
171 1jjv_A Dephospho-COA kinase; P 96.5 0.00091 3.1E-08 59.1 2.2 32 38-75 3-34 (206)
172 1p9r_A General secretion pathw 96.5 0.0035 1.2E-07 62.4 6.7 65 13-84 147-211 (418)
173 2jaq_A Deoxyguanosine kinase; 96.5 0.0018 6.2E-08 56.5 4.0 23 39-61 2-24 (205)
174 2qby_B CDC6 homolog 3, cell di 96.5 0.0033 1.1E-07 60.5 6.2 37 37-73 45-89 (384)
175 1nlf_A Regulatory protein REPA 96.5 0.003 1E-07 58.7 5.8 27 36-62 29-55 (279)
176 1byi_A Dethiobiotin synthase; 96.5 0.0027 9.4E-08 56.5 5.2 35 38-72 2-37 (224)
177 1ye8_A Protein THEP1, hypothet 96.5 0.0019 6.4E-08 56.5 4.0 23 39-61 2-24 (178)
178 1c9k_A COBU, adenosylcobinamid 96.5 0.0015 5.1E-08 57.6 3.3 32 40-75 2-33 (180)
179 3aez_A Pantothenate kinase; tr 96.5 0.0026 9E-08 60.7 5.3 40 35-74 88-129 (312)
180 1fnn_A CDC6P, cell division co 96.4 0.0035 1.2E-07 60.3 6.2 37 38-74 45-82 (389)
181 2vli_A Antibiotic resistance p 96.4 0.0012 4.2E-08 56.8 2.6 25 37-61 5-29 (183)
182 3tau_A Guanylate kinase, GMP k 96.4 0.0021 7.1E-08 57.3 4.1 26 36-61 7-32 (208)
183 3d3q_A TRNA delta(2)-isopenten 96.4 0.0022 7.5E-08 62.1 4.4 35 38-77 8-42 (340)
184 1g8f_A Sulfate adenylyltransfe 96.4 0.0027 9.3E-08 64.8 5.3 59 15-75 375-435 (511)
185 1q3t_A Cytidylate kinase; nucl 96.4 0.0021 7.2E-08 58.3 4.1 34 36-74 15-48 (236)
186 2orw_A Thymidine kinase; TMTK, 96.4 0.004 1.4E-07 54.7 5.7 36 37-72 3-38 (184)
187 2ewv_A Twitching motility prot 96.4 0.0036 1.2E-07 61.2 5.8 39 36-74 135-174 (372)
188 3crm_A TRNA delta(2)-isopenten 96.4 0.0024 8.3E-08 61.4 4.5 35 38-77 6-40 (323)
189 3a00_A Guanylate kinase, GMP k 96.4 0.0024 8.4E-08 55.6 4.1 24 38-61 2-25 (186)
190 2xb4_A Adenylate kinase; ATP-b 96.4 0.0021 7E-08 57.9 3.7 23 39-61 2-24 (223)
191 2b8t_A Thymidine kinase; deoxy 96.3 0.0042 1.4E-07 56.6 5.6 36 36-71 11-46 (223)
192 3umf_A Adenylate kinase; rossm 96.3 0.0028 9.7E-08 57.4 4.5 26 36-61 28-53 (217)
193 3syl_A Protein CBBX; photosynt 96.3 0.0042 1.4E-07 58.1 5.9 30 36-65 66-95 (309)
194 2f6r_A COA synthase, bifunctio 96.3 0.002 6.7E-08 60.5 3.5 33 37-75 75-107 (281)
195 2z4s_A Chromosomal replication 96.3 0.0042 1.4E-07 62.0 6.1 37 37-73 130-168 (440)
196 3bh0_A DNAB-like replicative h 96.3 0.0044 1.5E-07 59.0 6.0 39 36-74 67-105 (315)
197 3t15_A Ribulose bisphosphate c 96.3 0.0048 1.6E-07 58.1 6.1 57 13-72 7-68 (293)
198 1x6v_B Bifunctional 3'-phospho 96.3 0.0028 9.6E-08 66.2 4.7 39 36-74 51-89 (630)
199 4ag6_A VIRB4 ATPase, type IV s 96.3 0.004 1.4E-07 60.9 5.5 38 37-74 35-72 (392)
200 3te6_A Regulatory protein SIR3 96.2 0.0036 1.2E-07 60.0 4.9 29 36-64 44-72 (318)
201 2z43_A DNA repair and recombin 96.2 0.0031 1.1E-07 60.3 4.4 40 36-75 106-151 (324)
202 1lv7_A FTSH; alpha/beta domain 96.2 0.0058 2E-07 55.8 6.1 25 37-61 45-69 (257)
203 4gp7_A Metallophosphoesterase; 96.2 0.0024 8.2E-08 55.1 3.2 22 36-57 8-29 (171)
204 4eaq_A DTMP kinase, thymidylat 96.2 0.0048 1.7E-07 56.0 5.4 34 36-70 25-58 (229)
205 1ltq_A Polynucleotide kinase; 96.2 0.0024 8.1E-08 59.8 3.4 33 38-74 3-35 (301)
206 1znw_A Guanylate kinase, GMP k 96.2 0.003 1E-07 56.0 3.9 26 36-61 19-44 (207)
207 3r20_A Cytidylate kinase; stru 96.2 0.0029 9.9E-08 58.0 3.8 25 37-61 9-33 (233)
208 3sop_A Neuronal-specific septi 96.2 0.0028 9.5E-08 59.3 3.8 35 38-72 3-37 (270)
209 2qz4_A Paraplegin; AAA+, SPG7, 96.2 0.0064 2.2E-07 55.2 6.0 26 36-61 38-63 (262)
210 1htw_A HI0065; nucleotide-bind 96.1 0.0031 1.1E-07 54.2 3.5 26 36-61 32-57 (158)
211 3io5_A Recombination and repai 96.1 0.0047 1.6E-07 59.3 5.0 38 36-74 28-67 (333)
212 1v5w_A DMC1, meiotic recombina 96.1 0.0038 1.3E-07 60.3 4.4 40 36-75 121-166 (343)
213 2i3b_A HCR-ntpase, human cance 96.1 0.004 1.4E-07 55.1 4.2 28 38-65 2-29 (189)
214 1z6g_A Guanylate kinase; struc 96.1 0.0031 1E-07 56.7 3.5 26 36-61 22-47 (218)
215 3cr8_A Sulfate adenylyltranfer 96.1 0.0031 1.1E-07 65.0 3.9 39 36-74 368-407 (552)
216 1ofh_A ATP-dependent HSL prote 96.1 0.0054 1.8E-07 57.1 5.3 34 37-73 50-83 (310)
217 1s96_A Guanylate kinase, GMP k 96.1 0.0041 1.4E-07 56.3 4.2 27 35-61 14-40 (219)
218 1xx6_A Thymidine kinase; NESG, 96.1 0.0079 2.7E-07 53.3 5.9 37 36-72 7-43 (191)
219 1nij_A Hypothetical protein YJ 96.0 0.0033 1.1E-07 60.0 3.5 40 37-78 4-43 (318)
220 1pzn_A RAD51, DNA repair and r 96.0 0.0039 1.3E-07 60.4 3.9 40 36-75 130-175 (349)
221 4edh_A DTMP kinase, thymidylat 96.0 0.007 2.4E-07 54.5 5.3 35 37-71 6-40 (213)
222 2h92_A Cytidylate kinase; ross 96.0 0.0031 1.1E-07 56.0 2.9 33 37-74 3-35 (219)
223 2v9p_A Replication protein E1; 96.0 0.0049 1.7E-07 58.7 4.3 26 36-61 125-150 (305)
224 2axn_A 6-phosphofructo-2-kinas 96.0 0.0055 1.9E-07 62.6 4.9 38 37-74 35-72 (520)
225 3hjn_A DTMP kinase, thymidylat 95.9 0.0077 2.6E-07 53.4 5.3 33 40-72 3-35 (197)
226 3co5_A Putative two-component 95.9 0.0013 4.4E-08 55.1 0.1 44 16-61 8-51 (143)
227 1ojl_A Transcriptional regulat 95.9 0.0049 1.7E-07 58.4 4.1 56 17-74 7-62 (304)
228 3ney_A 55 kDa erythrocyte memb 95.9 0.0053 1.8E-07 54.8 4.1 25 36-60 18-42 (197)
229 2dyk_A GTP-binding protein; GT 95.9 0.0044 1.5E-07 51.4 3.4 23 38-60 2-24 (161)
230 3tif_A Uncharacterized ABC tra 95.9 0.004 1.4E-07 56.9 3.3 26 36-61 30-55 (235)
231 3lnc_A Guanylate kinase, GMP k 95.9 0.0032 1.1E-07 56.7 2.5 26 36-61 26-52 (231)
232 2r6a_A DNAB helicase, replicat 95.9 0.0099 3.4E-07 59.5 6.3 40 36-75 202-242 (454)
233 2vp4_A Deoxynucleoside kinase; 95.9 0.0042 1.4E-07 56.1 3.2 32 36-71 19-50 (230)
234 4a1f_A DNAB helicase, replicat 95.8 0.011 3.6E-07 57.2 6.2 57 17-76 29-85 (338)
235 3t1o_A Gliding protein MGLA; G 95.8 0.012 4E-07 50.4 5.9 26 37-62 14-39 (198)
236 3h4m_A Proteasome-activating n 95.8 0.0078 2.7E-07 55.6 5.0 26 36-61 50-75 (285)
237 1sxj_C Activator 1 40 kDa subu 95.8 0.0034 1.1E-07 60.1 2.4 26 39-64 48-73 (340)
238 3ld9_A DTMP kinase, thymidylat 95.8 0.005 1.7E-07 56.0 3.5 41 36-76 20-61 (223)
239 3sr0_A Adenylate kinase; phosp 95.8 0.0061 2.1E-07 54.6 4.0 23 39-61 2-24 (206)
240 3v9p_A DTMP kinase, thymidylat 95.8 0.0088 3E-07 54.5 5.0 36 36-71 24-63 (227)
241 1ihu_A Arsenical pump-driving 95.8 0.018 6E-07 59.5 7.9 55 19-77 313-367 (589)
242 1njg_A DNA polymerase III subu 95.8 0.012 4.2E-07 51.6 5.9 27 37-63 45-71 (250)
243 3lda_A DNA repair protein RAD5 95.8 0.0065 2.2E-07 60.1 4.4 39 36-74 177-221 (400)
244 3lv8_A DTMP kinase, thymidylat 95.8 0.012 4E-07 54.0 5.8 35 37-71 27-62 (236)
245 2pcj_A ABC transporter, lipopr 95.8 0.0047 1.6E-07 56.0 3.1 26 36-61 29-54 (224)
246 1z2a_A RAS-related protein RAB 95.7 0.006 2E-07 50.8 3.5 23 37-59 5-27 (168)
247 1tf7_A KAIC; homohexamer, hexa 95.7 0.01 3.6E-07 60.4 6.0 50 24-74 27-77 (525)
248 2cbz_A Multidrug resistance-as 95.7 0.0053 1.8E-07 56.2 3.3 26 36-61 30-55 (237)
249 1sxj_E Activator 1 40 kDa subu 95.7 0.007 2.4E-07 57.7 4.4 26 38-63 37-62 (354)
250 3b9p_A CG5977-PA, isoform A; A 95.7 0.0097 3.3E-07 55.4 5.2 26 36-61 53-78 (297)
251 2r2a_A Uncharacterized protein 95.7 0.0075 2.6E-07 53.8 4.1 38 37-74 5-48 (199)
252 2chq_A Replication factor C sm 95.7 0.0055 1.9E-07 57.1 3.4 27 38-64 39-65 (319)
253 3bgw_A DNAB-like replicative h 95.7 0.012 4.2E-07 58.8 6.1 41 36-76 196-236 (444)
254 4tmk_A Protein (thymidylate ki 95.7 0.014 4.7E-07 52.6 5.9 34 37-70 3-37 (213)
255 1sxj_B Activator 1 37 kDa subu 95.7 0.0078 2.7E-07 56.2 4.3 43 18-64 27-69 (323)
256 4g1u_C Hemin import ATP-bindin 95.6 0.0033 1.1E-07 58.6 1.6 36 36-71 36-71 (266)
257 3cf0_A Transitional endoplasmi 95.6 0.0089 3E-07 56.3 4.6 26 36-61 48-73 (301)
258 1oix_A RAS-related protein RAB 95.6 0.0067 2.3E-07 52.8 3.4 23 38-60 30-52 (191)
259 1c1y_A RAS-related protein RAP 95.6 0.0072 2.5E-07 50.3 3.5 22 38-59 4-25 (167)
260 1kao_A RAP2A; GTP-binding prot 95.6 0.0075 2.6E-07 50.0 3.6 22 38-59 4-25 (167)
261 1iqp_A RFCS; clamp loader, ext 95.6 0.012 4.1E-07 55.0 5.3 28 37-64 46-73 (327)
262 1sgw_A Putative ABC transporte 95.6 0.0054 1.9E-07 55.3 2.8 26 36-61 34-59 (214)
263 1z0j_A RAB-22, RAS-related pro 95.6 0.0076 2.6E-07 50.3 3.6 24 37-60 6-29 (170)
264 2pze_A Cystic fibrosis transme 95.6 0.0064 2.2E-07 55.2 3.2 26 36-61 33-58 (229)
265 2zu0_C Probable ATP-dependent 95.6 0.0079 2.7E-07 56.0 3.9 25 36-60 45-69 (267)
266 1tf7_A KAIC; homohexamer, hexa 95.6 0.013 4.3E-07 59.8 5.7 38 36-73 280-317 (525)
267 3gfo_A Cobalt import ATP-bindi 95.5 0.0065 2.2E-07 57.0 3.3 35 36-70 33-67 (275)
268 1u8z_A RAS-related protein RAL 95.5 0.0079 2.7E-07 49.9 3.5 23 37-59 4-26 (168)
269 1ek0_A Protein (GTP-binding pr 95.5 0.0079 2.7E-07 50.1 3.5 23 38-60 4-26 (170)
270 1mv5_A LMRA, multidrug resista 95.5 0.0063 2.1E-07 55.8 3.1 35 36-70 27-61 (243)
271 1b0u_A Histidine permease; ABC 95.5 0.007 2.4E-07 56.2 3.4 26 36-61 31-56 (262)
272 2d2e_A SUFC protein; ABC-ATPas 95.5 0.0079 2.7E-07 55.4 3.7 25 36-60 28-52 (250)
273 2lkc_A Translation initiation 95.5 0.0083 2.8E-07 50.6 3.6 24 36-59 7-30 (178)
274 1w5s_A Origin recognition comp 95.5 0.018 6.3E-07 55.7 6.5 38 37-74 50-95 (412)
275 1vpl_A ABC transporter, ATP-bi 95.5 0.0071 2.4E-07 56.0 3.4 35 36-70 40-74 (256)
276 2olj_A Amino acid ABC transpor 95.5 0.0071 2.4E-07 56.3 3.4 26 36-61 49-74 (263)
277 1z08_A RAS-related protein RAB 95.5 0.0084 2.9E-07 50.1 3.6 24 37-60 6-29 (170)
278 1g6h_A High-affinity branched- 95.5 0.0067 2.3E-07 56.1 3.2 35 36-70 32-66 (257)
279 3b85_A Phosphate starvation-in 95.5 0.0073 2.5E-07 54.2 3.3 44 18-68 7-52 (208)
280 2f9l_A RAB11B, member RAS onco 95.5 0.008 2.7E-07 52.4 3.5 23 38-60 6-28 (199)
281 2ff7_A Alpha-hemolysin translo 95.5 0.0068 2.3E-07 55.8 3.2 35 36-70 34-68 (247)
282 1ji0_A ABC transporter; ATP bi 95.5 0.0069 2.4E-07 55.4 3.2 35 36-70 31-65 (240)
283 2ce2_X GTPase HRAS; signaling 95.5 0.0082 2.8E-07 49.6 3.4 22 38-59 4-25 (166)
284 2q6t_A DNAB replication FORK h 95.5 0.017 5.8E-07 57.6 6.3 39 36-74 199-238 (444)
285 1g16_A RAS-related protein SEC 95.5 0.0081 2.8E-07 50.1 3.4 22 38-59 4-25 (170)
286 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.013 4.5E-07 55.8 5.2 26 36-61 44-69 (322)
287 1d2n_A N-ethylmaleimide-sensit 95.5 0.012 4.1E-07 54.2 4.8 26 36-61 63-88 (272)
288 2ghi_A Transport protein; mult 95.5 0.0075 2.6E-07 55.9 3.3 26 36-61 45-70 (260)
289 1um8_A ATP-dependent CLP prote 95.5 0.011 3.9E-07 57.2 4.8 34 37-73 72-105 (376)
290 1bif_A 6-phosphofructo-2-kinas 95.5 0.011 3.7E-07 59.4 4.8 64 9-72 4-74 (469)
291 2erx_A GTP-binding protein DI- 95.5 0.0065 2.2E-07 50.7 2.7 23 37-59 3-25 (172)
292 2fn4_A P23, RAS-related protei 95.4 0.0086 3E-07 50.5 3.4 24 37-60 9-32 (181)
293 2ged_A SR-beta, signal recogni 95.4 0.011 3.7E-07 50.9 4.1 25 36-60 47-71 (193)
294 3clv_A RAB5 protein, putative; 95.4 0.0096 3.3E-07 51.0 3.7 24 37-60 7-30 (208)
295 3t5d_A Septin-7; GTP-binding p 95.4 0.021 7.1E-07 52.9 6.3 23 37-59 8-30 (274)
296 1in4_A RUVB, holliday junction 95.4 0.0093 3.2E-07 57.1 4.0 25 37-61 51-75 (334)
297 1ixz_A ATP-dependent metallopr 95.4 0.009 3.1E-07 54.4 3.7 24 38-61 50-73 (254)
298 1z0f_A RAB14, member RAS oncog 95.4 0.0092 3.1E-07 50.2 3.5 23 37-59 15-37 (179)
299 1upt_A ARL1, ADP-ribosylation 95.4 0.0099 3.4E-07 49.7 3.7 24 36-59 6-29 (171)
300 1ky3_A GTP-binding protein YPT 95.4 0.0094 3.2E-07 50.3 3.6 24 37-60 8-31 (182)
301 1r2q_A RAS-related protein RAB 95.4 0.0095 3.2E-07 49.6 3.5 23 37-59 6-28 (170)
302 2yz2_A Putative ABC transporte 95.4 0.008 2.7E-07 55.9 3.3 35 36-70 32-66 (266)
303 2ixe_A Antigen peptide transpo 95.4 0.008 2.7E-07 56.1 3.3 35 36-70 44-78 (271)
304 2i1q_A DNA repair and recombin 95.4 0.0087 3E-07 56.8 3.6 40 36-75 97-152 (322)
305 1e9r_A Conjugal transfer prote 95.4 0.013 4.6E-07 57.8 5.1 36 38-73 54-89 (437)
306 2qi9_C Vitamin B12 import ATP- 95.4 0.008 2.8E-07 55.5 3.2 34 36-70 25-58 (249)
307 2ihy_A ABC transporter, ATP-bi 95.4 0.008 2.7E-07 56.4 3.2 35 36-70 46-80 (279)
308 1wms_A RAB-9, RAB9, RAS-relate 95.4 0.0099 3.4E-07 50.1 3.6 23 37-59 7-29 (177)
309 3eie_A Vacuolar protein sortin 95.3 0.015 5.1E-07 55.2 5.1 26 36-61 50-75 (322)
310 1ex7_A Guanylate kinase; subst 95.3 0.01 3.4E-07 52.5 3.5 21 40-60 4-24 (186)
311 3bc1_A RAS-related protein RAB 95.3 0.01 3.6E-07 50.5 3.5 23 37-59 11-33 (195)
312 1sxj_D Activator 1 41 kDa subu 95.3 0.0073 2.5E-07 57.3 2.8 26 38-63 59-84 (353)
313 1r8s_A ADP-ribosylation factor 95.3 0.011 3.7E-07 49.2 3.5 22 39-60 2-23 (164)
314 4dsu_A GTPase KRAS, isoform 2B 95.3 0.011 3.7E-07 50.3 3.6 23 37-59 4-26 (189)
315 1sxj_A Activator 1 95 kDa subu 95.3 0.015 5.2E-07 59.1 5.2 34 37-73 77-110 (516)
316 3hws_A ATP-dependent CLP prote 95.3 0.012 4.1E-07 56.8 4.2 26 36-61 50-75 (363)
317 1svi_A GTP-binding protein YSX 95.3 0.0094 3.2E-07 51.3 3.2 25 36-60 22-46 (195)
318 2y8e_A RAB-protein 6, GH09086P 95.3 0.01 3.6E-07 49.9 3.4 22 38-59 15-36 (179)
319 2gza_A Type IV secretion syste 95.3 0.0073 2.5E-07 58.7 2.6 25 37-61 175-199 (361)
320 2gj8_A MNME, tRNA modification 95.2 0.0087 3E-07 51.1 2.8 24 36-59 3-26 (172)
321 2a9k_A RAS-related protein RAL 95.2 0.011 3.8E-07 50.1 3.5 23 37-59 18-40 (187)
322 2nq2_C Hypothetical ABC transp 95.2 0.0095 3.2E-07 55.0 3.2 26 36-61 30-55 (253)
323 4hlc_A DTMP kinase, thymidylat 95.2 0.017 5.9E-07 51.5 4.8 32 39-71 4-35 (205)
324 3con_A GTPase NRAS; structural 95.2 0.012 3.9E-07 50.6 3.5 24 37-60 21-44 (190)
325 2nzj_A GTP-binding protein REM 95.2 0.0092 3.1E-07 50.1 2.8 23 37-59 4-26 (175)
326 1hqc_A RUVB; extended AAA-ATPa 95.2 0.015 5.1E-07 54.6 4.6 34 37-73 38-71 (324)
327 2oil_A CATX-8, RAS-related pro 95.2 0.012 4E-07 50.8 3.5 23 37-59 25-47 (193)
328 2onk_A Molybdate/tungstate ABC 95.2 0.012 4.1E-07 53.9 3.8 33 38-70 25-57 (240)
329 2hxs_A RAB-26, RAS-related pro 95.2 0.011 3.7E-07 49.9 3.2 24 37-60 6-29 (178)
330 3d8b_A Fidgetin-like protein 1 95.2 0.017 5.9E-07 55.7 5.0 26 36-61 116-141 (357)
331 1nrj_B SR-beta, signal recogni 95.2 0.014 4.9E-07 51.3 4.1 25 36-60 11-35 (218)
332 2x8a_A Nuclear valosin-contain 95.2 0.0098 3.4E-07 55.5 3.1 24 38-61 45-68 (274)
333 2bme_A RAB4A, RAS-related prot 95.2 0.012 4E-07 50.2 3.4 24 37-60 10-33 (186)
334 2efe_B Small GTP-binding prote 95.1 0.013 4.3E-07 49.6 3.6 23 37-59 12-34 (181)
335 3pqc_A Probable GTP-binding pr 95.1 0.012 4E-07 50.4 3.3 23 37-59 23-45 (195)
336 3kkq_A RAS-related protein M-R 95.1 0.013 4.3E-07 49.9 3.5 23 37-59 18-40 (183)
337 2vhj_A Ntpase P4, P4; non- hyd 95.1 0.0072 2.4E-07 58.1 2.1 34 37-73 123-156 (331)
338 2wjg_A FEOB, ferrous iron tran 95.1 0.009 3.1E-07 51.1 2.6 23 37-59 7-29 (188)
339 1svm_A Large T antigen; AAA+ f 95.1 0.024 8.4E-07 55.5 6.0 26 36-61 168-193 (377)
340 2ga8_A Hypothetical 39.9 kDa p 95.1 0.023 7.7E-07 55.3 5.6 26 37-62 24-49 (359)
341 1m7b_A RND3/RHOE small GTP-bin 95.1 0.012 4.1E-07 50.4 3.4 24 37-60 7-30 (184)
342 2ius_A DNA translocase FTSK; n 95.1 0.016 5.4E-07 59.1 4.7 43 37-79 167-211 (512)
343 2g6b_A RAS-related protein RAB 95.1 0.013 4.5E-07 49.5 3.5 23 37-59 10-32 (180)
344 3cph_A RAS-related protein SEC 95.1 0.013 4.3E-07 51.2 3.5 23 37-59 20-42 (213)
345 3dz8_A RAS-related protein RAB 95.1 0.012 4.2E-07 50.7 3.4 24 37-60 23-46 (191)
346 1mh1_A RAC1; GTP-binding, GTPa 95.1 0.013 4.5E-07 49.7 3.5 23 37-59 5-27 (186)
347 2pt7_A CAG-ALFA; ATPase, prote 95.1 0.0069 2.4E-07 58.2 1.9 26 37-62 171-196 (330)
348 2qp9_X Vacuolar protein sortin 95.1 0.017 6E-07 55.7 4.7 25 37-61 84-108 (355)
349 1iy2_A ATP-dependent metallopr 95.1 0.011 3.7E-07 54.8 3.2 24 38-61 74-97 (278)
350 1lw7_A Transcriptional regulat 95.0 0.011 3.6E-07 57.4 3.1 25 37-61 170-194 (365)
351 2fna_A Conserved hypothetical 95.0 0.021 7.1E-07 53.8 5.0 36 38-76 31-66 (357)
352 3q72_A GTP-binding protein RAD 95.0 0.0091 3.1E-07 49.8 2.3 22 38-59 3-24 (166)
353 2gf9_A RAS-related protein RAB 95.0 0.014 4.8E-07 50.1 3.5 22 38-59 23-44 (189)
354 3bwd_D RAC-like GTP-binding pr 95.0 0.017 5.7E-07 48.9 3.9 23 37-59 8-30 (182)
355 3q85_A GTP-binding protein REM 95.0 0.014 4.7E-07 48.8 3.3 22 38-59 3-24 (169)
356 1tq4_A IIGP1, interferon-induc 95.0 0.016 5.6E-07 57.4 4.4 37 20-61 57-93 (413)
357 3tw8_B RAS-related protein RAB 95.0 0.0088 3E-07 50.4 2.1 23 37-59 9-31 (181)
358 2gf0_A GTP-binding protein DI- 95.0 0.016 5.5E-07 49.8 3.9 23 37-59 8-30 (199)
359 3nh6_A ATP-binding cassette SU 95.0 0.0093 3.2E-07 56.8 2.4 26 36-61 79-104 (306)
360 3t5g_A GTP-binding protein RHE 95.0 0.013 4.5E-07 49.7 3.2 23 37-59 6-28 (181)
361 4gzl_A RAS-related C3 botulinu 95.0 0.014 4.6E-07 51.3 3.4 24 36-59 29-52 (204)
362 2ocp_A DGK, deoxyguanosine kin 95.0 0.012 4.2E-07 53.2 3.1 25 37-61 2-26 (241)
363 1z06_A RAS-related protein RAB 95.0 0.015 5.2E-07 49.9 3.6 23 37-59 20-42 (189)
364 2cxx_A Probable GTP-binding pr 95.0 0.011 3.7E-07 50.5 2.6 22 38-59 2-23 (190)
365 2fg5_A RAB-22B, RAS-related pr 95.0 0.014 4.9E-07 50.3 3.4 23 37-59 23-45 (192)
366 2zej_A Dardarin, leucine-rich 95.0 0.0096 3.3E-07 51.2 2.3 22 38-59 3-24 (184)
367 3tkl_A RAS-related protein RAB 95.0 0.015 5.1E-07 49.9 3.5 23 37-59 16-38 (196)
368 2bbs_A Cystic fibrosis transme 95.0 0.012 4.2E-07 55.5 3.2 26 36-61 63-88 (290)
369 2a5j_A RAS-related protein RAB 94.9 0.015 5.2E-07 50.1 3.5 23 37-59 21-43 (191)
370 2pjz_A Hypothetical protein ST 94.9 0.013 4.3E-07 54.6 3.1 33 37-70 30-62 (263)
371 3pxi_A Negative regulator of g 94.9 0.034 1.2E-06 59.1 6.8 36 39-74 523-558 (758)
372 2wji_A Ferrous iron transport 94.9 0.012 4.2E-07 49.5 2.7 22 38-59 4-25 (165)
373 1x3s_A RAS-related protein RAB 94.9 0.016 5.5E-07 49.6 3.5 24 37-60 15-38 (195)
374 3upu_A ATP-dependent DNA helic 94.9 0.04 1.4E-06 55.0 6.9 54 16-70 25-79 (459)
375 2atv_A RERG, RAS-like estrogen 94.9 0.017 5.9E-07 50.0 3.7 23 37-59 28-50 (196)
376 3oes_A GTPase rhebl1; small GT 94.9 0.015 5.2E-07 50.6 3.4 23 37-59 24-46 (201)
377 1pui_A ENGB, probable GTP-bind 94.9 0.007 2.4E-07 53.0 1.1 25 36-60 25-49 (210)
378 1q57_A DNA primase/helicase; d 94.8 0.019 6.6E-07 58.0 4.5 40 36-75 241-281 (503)
379 1zj6_A ADP-ribosylation factor 94.8 0.015 5.1E-07 49.9 3.2 24 36-59 15-38 (187)
380 1zd9_A ADP-ribosylation factor 94.8 0.017 5.8E-07 49.7 3.5 23 37-59 22-44 (188)
381 1vg8_A RAS-related protein RAB 94.8 0.017 5.9E-07 50.1 3.6 24 37-60 8-31 (207)
382 3pfi_A Holliday junction ATP-d 94.8 0.023 7.7E-07 53.9 4.7 34 37-73 55-88 (338)
383 3uk6_A RUVB-like 2; hexameric 94.8 0.024 8.3E-07 54.2 4.9 26 37-62 70-95 (368)
384 3ihw_A Centg3; RAS, centaurin, 94.8 0.018 6E-07 49.7 3.6 23 37-59 20-42 (184)
385 4b4t_K 26S protease regulatory 94.8 0.029 1E-06 55.8 5.6 26 36-61 205-230 (428)
386 3c5c_A RAS-like protein 12; GD 94.8 0.018 6.1E-07 49.7 3.6 24 37-60 21-44 (187)
387 3pxg_A Negative regulator of g 94.8 0.016 5.6E-07 58.2 3.8 27 37-63 201-227 (468)
388 2bov_A RAla, RAS-related prote 94.8 0.017 6E-07 49.9 3.5 23 37-59 14-36 (206)
389 1zbd_A Rabphilin-3A; G protein 94.7 0.015 5.2E-07 50.5 3.0 23 37-59 8-30 (203)
390 2p5s_A RAS and EF-hand domain 94.7 0.018 6.2E-07 50.0 3.5 24 36-59 27-50 (199)
391 2iwr_A Centaurin gamma 1; ANK 94.7 0.014 4.9E-07 49.3 2.7 23 37-59 7-29 (178)
392 3tui_C Methionine import ATP-b 94.7 0.019 6.4E-07 56.1 3.9 39 36-74 53-91 (366)
393 1ksh_A ARF-like protein 2; sma 94.7 0.014 4.6E-07 49.9 2.6 23 37-59 18-40 (186)
394 3m6a_A ATP-dependent protease 94.7 0.03 1E-06 57.4 5.6 26 36-61 107-132 (543)
395 1m2o_B GTP-binding protein SAR 94.7 0.019 6.3E-07 49.8 3.5 23 37-59 23-45 (190)
396 3reg_A RHO-like small GTPase; 94.7 0.019 6.5E-07 49.5 3.5 24 37-60 23-46 (194)
397 2oap_1 GSPE-2, type II secreti 94.7 0.012 4.1E-07 60.0 2.5 35 37-72 260-294 (511)
398 3vfd_A Spastin; ATPase, microt 94.7 0.03 1E-06 54.5 5.3 25 37-61 148-172 (389)
399 3llu_A RAS-related GTP-binding 94.7 0.016 5.4E-07 50.3 2.9 23 37-59 20-42 (196)
400 2ew1_A RAS-related protein RAB 94.7 0.018 6.3E-07 50.6 3.4 24 37-60 26-49 (201)
401 3e1s_A Exodeoxyribonuclease V, 94.7 0.064 2.2E-06 55.4 7.9 49 17-71 190-238 (574)
402 2h17_A ADP-ribosylation factor 94.7 0.013 4.6E-07 50.0 2.4 24 37-60 21-44 (181)
403 4i1u_A Dephospho-COA kinase; s 94.7 0.014 4.9E-07 52.5 2.7 33 37-75 9-41 (210)
404 2qmh_A HPR kinase/phosphorylas 94.7 0.014 4.6E-07 52.4 2.5 35 37-77 34-68 (205)
405 3fvq_A Fe(3+) IONS import ATP- 94.7 0.019 6.5E-07 55.9 3.7 35 36-70 29-63 (359)
406 2r62_A Cell division protease 94.6 0.011 3.6E-07 54.3 1.8 25 37-61 44-68 (268)
407 3cmu_A Protein RECA, recombina 94.6 0.031 1.1E-06 65.2 5.9 60 14-75 1405-1465(2050)
408 3igf_A ALL4481 protein; two-do 94.6 0.019 6.5E-07 56.2 3.6 37 39-76 4-40 (374)
409 2qen_A Walker-type ATPase; unk 94.6 0.02 6.7E-07 53.9 3.6 33 38-75 32-64 (350)
410 2fh5_B SR-beta, signal recogni 94.6 0.022 7.4E-07 50.0 3.6 24 37-60 7-30 (214)
411 2j9r_A Thymidine kinase; TK1, 94.6 0.047 1.6E-06 49.2 5.9 37 36-72 27-63 (214)
412 4b4t_L 26S protease subunit RP 94.6 0.036 1.2E-06 55.3 5.6 26 36-61 214-239 (437)
413 4bas_A ADP-ribosylation factor 94.6 0.011 3.8E-07 50.9 1.7 24 36-59 16-39 (199)
414 1a5t_A Delta prime, HOLB; zinc 94.6 0.044 1.5E-06 52.3 6.1 42 19-63 9-50 (334)
415 1gwn_A RHO-related GTP-binding 94.6 0.02 6.8E-07 50.5 3.4 24 37-60 28-51 (205)
416 2yyz_A Sugar ABC transporter, 94.6 0.021 7.3E-07 55.5 3.9 35 36-70 28-62 (359)
417 2bcg_Y Protein YP2, GTP-bindin 94.6 0.02 6.9E-07 49.8 3.4 23 37-59 8-30 (206)
418 2it1_A 362AA long hypothetical 94.6 0.022 7.5E-07 55.5 3.9 35 36-70 28-62 (362)
419 2r44_A Uncharacterized protein 94.6 0.024 8.2E-07 53.6 4.1 35 38-75 47-81 (331)
420 1tue_A Replication protein E1; 94.5 0.021 7.3E-07 51.4 3.5 24 38-61 59-82 (212)
421 2o52_A RAS-related protein RAB 94.5 0.016 5.4E-07 50.6 2.6 24 37-60 25-48 (200)
422 1z47_A CYSA, putative ABC-tran 94.5 0.021 7.1E-07 55.5 3.7 35 36-70 40-74 (355)
423 1qvr_A CLPB protein; coiled co 94.5 0.041 1.4E-06 59.4 6.4 37 37-73 191-234 (854)
424 3rlf_A Maltose/maltodextrin im 94.5 0.022 7.6E-07 55.9 3.9 35 36-70 28-62 (381)
425 2zan_A Vacuolar protein sortin 94.5 0.032 1.1E-06 55.7 5.1 26 36-61 166-191 (444)
426 2yc2_C IFT27, small RAB-relate 94.5 0.0098 3.3E-07 51.6 1.2 23 38-60 21-43 (208)
427 2fv8_A H6, RHO-related GTP-bin 94.5 0.022 7.5E-07 49.9 3.4 23 37-59 25-47 (207)
428 2atx_A Small GTP binding prote 94.5 0.022 7.6E-07 49.0 3.4 23 38-60 19-41 (194)
429 2fu5_C RAS-related protein RAB 94.5 0.013 4.4E-07 49.9 1.8 25 37-61 8-32 (183)
430 1moz_A ARL1, ADP-ribosylation 94.5 0.023 7.9E-07 48.1 3.4 23 36-58 17-39 (183)
431 4b4t_M 26S protease regulatory 94.5 0.04 1.4E-06 55.0 5.6 26 36-61 214-239 (434)
432 1v43_A Sugar-binding transport 94.4 0.024 8.2E-07 55.4 3.9 35 36-70 36-70 (372)
433 3d31_A Sulfate/molybdate ABC t 94.4 0.019 6.4E-07 55.7 3.0 35 36-70 25-59 (348)
434 3u61_B DNA polymerase accessor 94.4 0.069 2.4E-06 50.2 7.0 25 37-61 48-72 (324)
435 2gco_A H9, RHO-related GTP-bin 94.4 0.023 8E-07 49.5 3.4 23 37-59 25-47 (201)
436 2q3h_A RAS homolog gene family 94.4 0.019 6.4E-07 49.8 2.7 24 37-60 20-43 (201)
437 2hup_A RAS-related protein RAB 94.4 0.024 8.3E-07 49.5 3.4 23 37-59 29-51 (201)
438 1p5z_B DCK, deoxycytidine kina 94.4 0.0083 2.9E-07 55.2 0.4 26 36-61 23-48 (263)
439 2qag_B Septin-6, protein NEDD5 94.4 0.019 6.4E-07 57.3 2.9 25 36-60 39-65 (427)
440 1g29_1 MALK, maltose transport 94.4 0.024 8.3E-07 55.4 3.7 26 36-61 28-53 (372)
441 3cmw_A Protein RECA, recombina 94.3 0.043 1.5E-06 63.2 6.2 43 36-78 382-424 (1706)
442 1jwy_B Dynamin A GTPase domain 94.3 0.024 8.3E-07 53.1 3.6 24 36-59 23-46 (315)
443 2c78_A Elongation factor TU-A; 94.3 0.039 1.4E-06 54.1 5.2 30 36-65 10-39 (405)
444 3iev_A GTP-binding protein ERA 94.3 0.23 7.7E-06 46.8 10.3 23 36-58 9-31 (308)
445 2il1_A RAB12; G-protein, GDP, 94.3 0.015 5.2E-07 50.3 2.0 23 38-60 27-49 (192)
446 3gd7_A Fusion complex of cysti 94.3 0.026 8.8E-07 55.6 3.7 39 36-75 46-84 (390)
447 1fzq_A ADP-ribosylation factor 94.3 0.016 5.5E-07 49.7 2.0 24 36-59 15-38 (181)
448 2h57_A ADP-ribosylation factor 94.3 0.013 4.5E-07 50.4 1.4 24 37-60 21-44 (190)
449 2f7s_A C25KG, RAS-related prot 94.2 0.022 7.4E-07 50.1 2.8 23 37-59 25-47 (217)
450 1jr3_A DNA polymerase III subu 94.2 0.058 2E-06 51.4 5.9 26 37-62 38-63 (373)
451 2b6h_A ADP-ribosylation factor 94.2 0.018 6.2E-07 49.9 2.1 24 36-59 28-51 (192)
452 2qu8_A Putative nucleolar GTP- 94.1 0.021 7.1E-07 51.0 2.5 23 37-59 29-51 (228)
453 2j1l_A RHO-related GTP-binding 94.1 0.022 7.5E-07 50.3 2.7 24 37-60 34-57 (214)
454 3lxx_A GTPase IMAP family memb 94.1 0.023 8E-07 51.1 2.9 23 37-59 29-51 (239)
455 3ice_A Transcription terminati 94.1 0.053 1.8E-06 53.5 5.5 32 36-67 173-204 (422)
456 2obl_A ESCN; ATPase, hydrolase 94.1 0.033 1.1E-06 53.9 4.0 36 23-61 60-95 (347)
457 3q3j_B RHO-related GTP-binding 94.1 0.031 1.1E-06 49.4 3.5 23 37-59 27-49 (214)
458 3cmw_A Protein RECA, recombina 94.1 0.053 1.8E-06 62.5 6.2 41 36-76 33-73 (1706)
459 1r6b_X CLPA protein; AAA+, N-t 94.1 0.071 2.4E-06 56.6 6.9 40 20-63 194-233 (758)
460 3k1j_A LON protease, ATP-depen 94.0 0.028 9.5E-07 58.3 3.6 42 37-78 60-101 (604)
461 1qvr_A CLPB protein; coiled co 94.0 0.032 1.1E-06 60.2 4.2 37 38-74 589-625 (854)
462 3cmu_A Protein RECA, recombina 94.0 0.049 1.7E-06 63.6 5.9 41 36-76 1080-1120(2050)
463 1oxx_K GLCV, glucose, ABC tran 94.0 0.02 6.8E-07 55.6 2.3 26 36-61 30-55 (353)
464 3hu3_A Transitional endoplasmi 94.0 0.037 1.3E-06 56.0 4.3 25 37-61 238-262 (489)
465 3cpj_B GTP-binding protein YPT 94.0 0.033 1.1E-06 49.4 3.6 24 37-60 13-36 (223)
466 4b4t_J 26S protease regulatory 94.0 0.051 1.7E-06 53.7 5.1 26 36-61 181-206 (405)
467 4dhe_A Probable GTP-binding pr 93.9 0.016 5.4E-07 51.2 1.3 24 36-59 28-51 (223)
468 1f6b_A SAR1; gtpases, N-termin 93.9 0.021 7.3E-07 49.8 2.1 34 23-59 14-47 (198)
469 2cjw_A GTP-binding protein GEM 93.9 0.036 1.2E-06 48.1 3.5 23 37-59 6-28 (192)
470 2ce7_A Cell division protein F 93.9 0.064 2.2E-06 54.2 5.7 25 37-61 49-73 (476)
471 2rcn_A Probable GTPase ENGC; Y 93.9 0.036 1.2E-06 53.9 3.8 23 37-59 215-237 (358)
472 3tmk_A Thymidylate kinase; pho 93.8 0.047 1.6E-06 49.2 4.3 26 36-61 4-29 (216)
473 3b5x_A Lipid A export ATP-bind 93.8 0.022 7.4E-07 58.9 2.3 35 36-70 368-402 (582)
474 1yqt_A RNAse L inhibitor; ATP- 93.8 0.036 1.2E-06 56.8 3.9 27 35-61 45-71 (538)
475 1g41_A Heat shock protein HSLU 93.8 0.046 1.6E-06 54.7 4.6 25 37-61 50-74 (444)
476 2qtf_A Protein HFLX, GTP-bindi 93.8 0.021 7.3E-07 55.5 2.2 23 38-60 180-202 (364)
477 4b4t_H 26S protease regulatory 93.8 0.054 1.9E-06 54.4 5.1 26 36-61 242-267 (467)
478 2j0v_A RAC-like GTP-binding pr 93.8 0.037 1.3E-06 48.3 3.4 23 37-59 9-31 (212)
479 2c9o_A RUVB-like 1; hexameric 93.7 0.043 1.5E-06 54.7 4.3 26 36-61 62-87 (456)
480 3tqf_A HPR(Ser) kinase; transf 93.7 0.034 1.2E-06 48.7 2.9 23 37-59 16-38 (181)
481 3of5_A Dethiobiotin synthetase 93.7 0.069 2.4E-06 48.4 5.2 36 37-72 4-40 (228)
482 2dpy_A FLII, flagellum-specifi 93.7 0.041 1.4E-06 54.9 4.0 36 23-61 146-181 (438)
483 3iby_A Ferrous iron transport 93.7 0.032 1.1E-06 51.4 3.0 22 38-59 2-23 (256)
484 3cbq_A GTP-binding protein REM 93.7 0.031 1E-06 48.7 2.7 22 37-58 23-44 (195)
485 2yv5_A YJEQ protein; hydrolase 93.6 0.042 1.4E-06 51.9 3.7 22 37-58 165-186 (302)
486 3qxc_A Dethiobiotin synthetase 93.6 0.085 2.9E-06 48.4 5.7 36 37-72 21-57 (242)
487 1g5t_A COB(I)alamin adenosyltr 93.6 0.1 3.5E-06 46.4 5.9 41 37-77 28-68 (196)
488 2qnr_A Septin-2, protein NEDD5 93.5 0.032 1.1E-06 52.7 2.7 24 37-60 18-41 (301)
489 2x77_A ADP-ribosylation factor 93.5 0.031 1E-06 47.9 2.3 23 36-58 21-43 (189)
490 1g8p_A Magnesium-chelatase 38 93.4 0.024 8.2E-07 53.7 1.6 23 39-61 47-69 (350)
491 3pvs_A Replication-associated 93.4 0.042 1.4E-06 54.9 3.5 25 37-61 50-74 (447)
492 3kta_A Chromosome segregation 93.3 0.054 1.8E-06 46.4 3.6 23 38-60 27-49 (182)
493 1h65_A Chloroplast outer envel 93.3 0.054 1.8E-06 49.9 3.9 23 37-59 39-61 (270)
494 2aka_B Dynamin-1; fusion prote 93.3 0.041 1.4E-06 50.9 3.1 24 36-59 25-48 (299)
495 2xtp_A GTPase IMAP family memb 93.3 0.042 1.4E-06 50.0 3.0 23 37-59 22-44 (260)
496 3k53_A Ferrous iron transport 93.3 0.037 1.3E-06 51.0 2.7 23 37-59 3-25 (271)
497 3b60_A Lipid A export ATP-bind 93.3 0.041 1.4E-06 56.7 3.3 26 36-61 368-393 (582)
498 3izy_P Translation initiation 93.2 0.046 1.6E-06 56.0 3.5 60 36-96 3-62 (537)
499 1ypw_A Transitional endoplasmi 93.2 0.046 1.6E-06 58.7 3.6 26 36-61 237-262 (806)
500 4b4t_I 26S protease regulatory 93.2 0.1 3.5E-06 52.0 5.8 26 36-61 215-240 (437)
No 1
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3e-19 Score=181.14 Aligned_cols=288 Identities=19% Similarity=0.229 Sum_probs=193.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCC-cEEEEcCCCCCCCCCCCceEEEEecccCCC----CCCCCC-------C
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYK-KVAYLDTDVGQPEFTAPGFLSLTVVDTLTP----DLTIPC-------L 103 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~-~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~----~~~~~~-------~ 103 (376)
.|.+++|+|++|||||||+|+|++++...+. +++++|.|+++.....|+.+++..+..... .+.... -
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~l~~~~~~~tv~eni~~~~~~~~~~~~~ 216 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCISATPISDILDAQLPTWGQSLTSGATLLH 216 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCEEEECCSCCCTTCTTCSCBCBSSCCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchhhcccccccchhhhhcccccccCcchHH
Confidence 4889999999999999999999999887777 778899999999999999998865433211 011000 0
Q ss_pred CCCceeEEcCCCCCCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccc-cccHHHHHHHHHHhCCCE
Q 017141 104 KTPKRCYFFGDVSSKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVK-GIGYDILVDMLKYITPTH 182 (376)
Q Consensus 104 ~~p~~~~f~G~~sp~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~-g~G~~ll~~~i~~~~p~~ 182 (376)
..-...+++|..+..+...++-...++++-...+|+.. ++..+.+++|+|.|.|.. +...+++.++++.++.+.
T Consensus 217 ~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~-----~p~i~~sGLlLDEpPts~LD~~~~~l~~l~~~~~~tv 291 (460)
T 2npi_A 217 NKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHL-----DPQVRRSGCIVDTPSISQLDENLAELHHIIEKLNVNI 291 (460)
T ss_dssp CBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHH-----CHHHHHSCEEEECCCGGGSCSSCHHHHHHHHHTTCCE
T ss_pred HHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhcc-----CcccCcceEEEeCCcccccChhHHHHHHHHHHhCCCE
Confidence 01124678898877666678877777777655544432 233456789999976653 233788999999999998
Q ss_pred EEEEecCc------ccccCCCCcccccCCCCcceEEEEecCCCCCCCcccccchHHHHHHHHHHHHHHhhhcCCCCCchh
Q 017141 183 VVKINISF------EKKNLPAGAFWLDNFEGVDVNLIEISSARQDSFNRSVLVQKDARLLRDLRIMAYFRQCFPSDLNIT 256 (376)
Q Consensus 183 Vv~l~~~~------~~~~l~~~~~~~~~~~~~~v~vv~l~~~~~~~~~rs~~~~~~~~~~R~~~~~~YF~~~~~~~~~~~ 256 (376)
|++..+.. +...+. +. ...++++.+++.++.. ..+ +.+.+..|..++++||++.....+
T Consensus 292 iiVth~~~~~l~~~~~~~~~------dr--~~~~~vi~l~k~G~iv-~g~---~~~~~~~~~~~i~~~f~g~~~~~l--- 356 (460)
T 2npi_A 292 MLVLCSETDPLWEKVKKTFG------PE--LGNNNIFFIPKLDGVS-AVD---DVYKRSLQRTSIREYFYGSLDTAL--- 356 (460)
T ss_dssp EEEECCSSCTHHHHHHHHHH------HH--HCGGGEEEECCCTTCC-CCC---HHHHHHHHHHHHHHHHHCCTTTCB---
T ss_pred EEEEccCchhhhHHHHHHhc------cc--ccCCEEEEEeCCCcEE-ECC---HHHHhhhhHHHHHHHhCCCCCCCc---
Confidence 88877643 111110 00 0011356677555433 322 233444567889999988542221
Q ss_pred hhHHhhhhhcCCCCeeeecCceEEEEeecC----------CCchhHHHHhhccEEEEEEcCCCC--C--CCCceEEEEEE
Q 017141 257 IIKELAQALAAYPPYQVPISSIKIRHLYCQ----------VPRSEIFYSLNATIVGLAISSDAS--E--NLPHCVGLGIV 322 (376)
Q Consensus 257 ~~~~~~~~L~~~~P~~v~~~~l~i~~~~~~----------v~~~~i~~~lngslVaL~~~~~~~--~--~~~~~lGlgiV 322 (376)
.....+++|+++.++.+... .|.......|.++|+|++..+... + ....++||..|
T Consensus 357 ----------~p~~~~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~ilav~~~~~~~~~~~v~~~~v~Gf~~v 426 (460)
T 2npi_A 357 ----------SPYAIGVDYEDLTIWKPSNVFDNEVGRVELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALI 426 (460)
T ss_dssp ----------CCEEEEEESTTCCEEEECCSTTTSSCCSCEEECCCCHHHHTTEEEEEESSCTTCCHHHHTTSCEEEEEEE
T ss_pred ----------CCccEEEecCCeEEEEecCCCCCCCCceeeecCCCCChhhhCcEEEEEecCcCCCccccccccCccEEEE
Confidence 11235688888888776531 111233456788999998774321 1 13479999999
Q ss_pred eeeecCCCEEEEEcCCCCCCCCcccEEEecccc
Q 017141 323 RGIDTLKGLLYVITPVPPGILEKVDLFLQGFIQ 355 (376)
Q Consensus 323 r~ID~~~~~i~iltP~~~~~l~~v~~Lv~G~i~ 355 (376)
..||.+++++++|+|.+++++++ .|+.|+++
T Consensus 427 ~~Vd~~~~~~~vl~p~~~~lp~~--~l~~~~~~ 457 (460)
T 2npi_A 427 TEVNEKRRKLRVLLPVPGRLPSK--AMILTSYR 457 (460)
T ss_dssp EEEETTTTEEEEEESSSSCCCCS--CEEEEEEE
T ss_pred EEEEcCCCEEEEEcCCCCCCCCC--ceeeeeeE
Confidence 99999999999999999999987 47788765
No 2
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=98.23 E-value=1.4e-05 Score=74.93 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=40.0
Q ss_pred CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
...+|+|+|++ |+||||++..|+..+.+.|.+|++||+|+..+.
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~~~ 125 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPT 125 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSSCC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCcc
Confidence 46789999886 899999999999999999999999999998764
No 3
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.22 E-value=3.8e-06 Score=84.38 Aligned_cols=121 Identities=23% Similarity=0.294 Sum_probs=73.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCCCCCCCCCCCCceeEEcCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTPDLTIPCLKTPKRCYFFGDVS 116 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~~~~~~~~~~p~~~~f~G~~s 116 (376)
+.+|+++|+.|+||||++..|+.++.++|++|+++++|+..+. . ++.... +. ....-| .+ ...+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~a-----a-----~eqL~~-~~-~~~gvp---v~-~~~~ 163 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPG-----A-----YHQLRQ-LL-DRYHIE---VF-GNPQ 163 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTH-----H-----HHHHHH-HH-GGGTCE---EE-CCTT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh-----H-----HHHHHH-HH-HhcCCc---EE-ecCC
Confidence 6799999999999999999999999999999999999986542 1 111000 00 000111 12 2111
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCCccccc--cHHHHHHHHHHhCCCEEEEEecC
Q 017141 117 SKRDPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPGWVKGI--GYDILVDMLKYITPTHVVKINIS 189 (376)
Q Consensus 117 p~~~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~Gwv~g~--G~~ll~~~i~~~~p~~Vv~l~~~ 189 (376)
..+|.... .+.++..+.+ ...-+||||+|..... -..-+..+.+..+|+.++.+-+.
T Consensus 164 -~~dp~~i~---~~al~~a~~~------------~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA 222 (443)
T 3dm5_A 164 -EKDAIKLA---KEGVDYFKSK------------GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDG 222 (443)
T ss_dssp -CCCHHHHH---HHHHHHHHHT------------TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred -CCCHHHHH---HHHHHHHHhC------------CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeC
Confidence 13443222 2222222221 2346899999975432 12345567778899987776653
No 4
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=98.16 E-value=1.5e-05 Score=75.43 Aligned_cols=45 Identities=22% Similarity=0.328 Sum_probs=40.7
Q ss_pred CCCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 35 SPPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 35 ~~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
..+.+|+|+|++ |+||||++..|+..+.+.|.+|++||+|+..+.
T Consensus 90 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~~~ 135 (286)
T 3la6_A 90 AQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGY 135 (286)
T ss_dssp TTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTTCC
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCCCC
Confidence 346789999987 899999999999999999999999999998764
No 5
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.10 E-value=3.7e-06 Score=84.27 Aligned_cols=41 Identities=32% Similarity=0.369 Sum_probs=38.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
++.+|+++|+.||||||++..|+.++...|++|.++++|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 36789999999999999999999999999999999999974
No 6
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=98.06 E-value=1.4e-05 Score=73.71 Aligned_cols=42 Identities=26% Similarity=0.298 Sum_probs=37.6
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.+|.|++.| |+||||++..|+..+.+.|++|+++|+|+.|+.
T Consensus 3 ~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~ 45 (263)
T 1hyq_A 3 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMAN 45 (263)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSS
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence 467787766 799999999999999999999999999998775
No 7
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.06 E-value=2.9e-05 Score=79.22 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=37.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
+.+|+|+|..|+||||++..|+.++.+.|.+|+++|+|+..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 56899999999999999999999999989999999999854
No 8
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.85 E-value=1.8e-05 Score=72.63 Aligned_cols=42 Identities=31% Similarity=0.359 Sum_probs=38.7
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
++|.|+|.| |+||||++..|+..+.++|++|+++|+|++|+.
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~ 45 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRN 45 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCC
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCC
Confidence 578888887 699999999999999999999999999998876
No 9
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.78 E-value=2e-05 Score=71.34 Aligned_cols=42 Identities=33% Similarity=0.347 Sum_probs=38.3
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
++|.|+|.| |+||||++..|+..+.++|++|+++|+|+.|+.
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~ 45 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMAN 45 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCC
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCC
Confidence 478888877 899999999999999999999999999998775
No 10
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.71 E-value=6.2e-05 Score=71.57 Aligned_cols=44 Identities=34% Similarity=0.457 Sum_probs=40.5
Q ss_pred CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.+.+|+|+|.+ |+||||++..|+..+.+.|.+|++||+|+.++.
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~ 147 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGY 147 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCC
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCcc
Confidence 46789999986 899999999999999999999999999998876
No 11
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.70 E-value=3.1e-05 Score=70.35 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=38.9
Q ss_pred CCEEEEEcCC-CCcHHHHHHHHHHHHHHc-CCcEEEEcCCCCCCC
Q 017141 37 PPIAFICGAK-NCGKTTFSRHLVNVLLQR-YKKVAYLDTDVGQPE 79 (376)
Q Consensus 37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~GQ~~ 79 (376)
+.+|.|++.| |+||||++..|+..+.+. |++|+++|+|+.++.
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~ 48 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGD 48 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCC
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCC
Confidence 5688899887 799999999999999998 999999999998655
No 12
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.70 E-value=4.4e-05 Score=66.84 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=36.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.+++.|+|++||||||++..|+.++-++|.+|.++..|++..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~~d 46 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGE 46 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCCcc
Confidence 4689999999999999999999999889999999999987543
No 13
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.68 E-value=3.8e-05 Score=72.24 Aligned_cols=43 Identities=35% Similarity=0.423 Sum_probs=38.5
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (376)
++|.|++.| |+||||++..|+..|.+.|++|+++|+|++|+.+
T Consensus 5 kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l 48 (286)
T 2xj4_A 5 RVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTS 48 (286)
T ss_dssp EEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHH
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCH
Confidence 468888777 8999999999999999999999999999988653
No 14
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.67 E-value=4.7e-05 Score=69.89 Aligned_cols=43 Identities=33% Similarity=0.449 Sum_probs=39.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEF 80 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~ 80 (376)
...+++.|..|+||||++..|+.++. .+++|+++|+|++.+..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~ 56 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKEL 56 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCcccc
Confidence 56889999999999999999999998 99999999999998764
No 15
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.66 E-value=2.4e-05 Score=72.47 Aligned_cols=42 Identities=31% Similarity=0.392 Sum_probs=37.0
Q ss_pred CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
.+++|.|.++| |+||||++..|+..+. +|++|+++|+|+..+
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~ 68 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQAS 68 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCH
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCC
Confidence 46788888888 7999999999999998 999999999999653
No 16
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.63 E-value=5.8e-05 Score=71.80 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=37.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~G 76 (376)
.+.+++++|+.|+||||+++.|+.++.. +|++|.++|+|+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 4679999999999999999999999885 7889999999984
No 17
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.62 E-value=7.9e-05 Score=68.99 Aligned_cols=43 Identities=28% Similarity=0.294 Sum_probs=39.2
Q ss_pred CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
+.+|.|++.| |+||||++..|+..+.+.|++|+++|+|+..+.
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~ 61 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPS 61 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCH
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCC
Confidence 5688999888 699999999999999999999999999998864
No 18
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.61 E-value=4.7e-05 Score=70.26 Aligned_cols=41 Identities=29% Similarity=0.242 Sum_probs=37.3
Q ss_pred CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
.++|.|++.| |+||||++..|+..+.+.|++|+++|+|+ |+
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~-~~ 47 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDP-QG 47 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCT-TC
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCC-Cc
Confidence 5688898877 89999999999999999999999999999 44
No 19
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.60 E-value=5.6e-05 Score=72.32 Aligned_cols=42 Identities=26% Similarity=0.414 Sum_probs=38.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
.+..|+|+|+.|+||||+++.|+.++...+.+|.++|+|+-.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 356899999999999999999999998889999999999754
No 20
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.60 E-value=6.5e-05 Score=72.31 Aligned_cols=42 Identities=24% Similarity=0.176 Sum_probs=38.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
++.+|+|+|+.|+||||+++.|+.++...+++|.++|+|+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 466899999999999999999999999999999999999854
No 21
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.59 E-value=5e-05 Score=66.32 Aligned_cols=39 Identities=28% Similarity=0.433 Sum_probs=35.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..|+++|..||||||+++.|+.++-..+.++.++|.|
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 467899999999999999999999998888889999876
No 22
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.58 E-value=5.2e-05 Score=66.81 Aligned_cols=40 Identities=25% Similarity=0.242 Sum_probs=35.4
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
++|.|++.| |+||||++..|+..+.++|++|+++|+|+..
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~ 42 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQM 42 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 367888777 6999999999999999999999999999653
No 23
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.57 E-value=8e-05 Score=70.46 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=38.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
.+++|.|+|--|+||||++..|+..|.+.|++|+++|+|+..
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 467888998779999999999999999999999999999943
No 24
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.57 E-value=5.9e-05 Score=73.38 Aligned_cols=44 Identities=27% Similarity=0.240 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
..++|.|+|..|+|||||+..|+..+...|.+|+++|+||+.+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~ 121 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTR 121 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCc
Confidence 46799999999999999999999999999999999999998763
No 25
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.54 E-value=9.2e-05 Score=64.98 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=36.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCc
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG 84 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG 84 (376)
.+.+.|+|++|||||||++.|+..+...+.+|..+..|++.-++..||
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~~id~~g 53 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPG 53 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--------
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCccccCCCC
Confidence 468999999999999999999999888889999999988765554444
No 26
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.54 E-value=3.4e-05 Score=69.92 Aligned_cols=40 Identities=25% Similarity=0.391 Sum_probs=36.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
+|.|.|.-|+||||++..|+..+.+.|++|+++|+|+ |+.
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~-~~~ 41 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP-DSC 41 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT-TSC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC-CcC
Confidence 5778898899999999999999999999999999999 454
No 27
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.54 E-value=5.9e-05 Score=75.56 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=39.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
+.+|+|+|+.|+||||++..|+.++.++|++|+++|+|+..+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~ 141 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA 141 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCch
Confidence 4589999999999999999999999999999999999996543
No 28
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.51 E-value=7.3e-05 Score=66.29 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
++..|.|+|+.||||||+++.|+..+-..|..++++|.|
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 478999999999999999999999987667767788865
No 29
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.51 E-value=6.9e-05 Score=71.96 Aligned_cols=41 Identities=27% Similarity=0.232 Sum_probs=35.4
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
++|+|+++| |+||||++..|+-.+.+.|++|.++|+|+ |+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~ 55 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP-AHS 55 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS-SCC
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC-CcC
Confidence 456666555 99999999999999999999999999999 654
No 30
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.49 E-value=0.00011 Score=73.57 Aligned_cols=42 Identities=33% Similarity=0.507 Sum_probs=38.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVGQP 78 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~GQ~ 78 (376)
+.+|+|+|..|+||||++..|+.++.++ |++|+++|+|+..+
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~ 142 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRP 142 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 5689999999999999999999999998 99999999999754
No 31
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.48 E-value=0.00018 Score=63.89 Aligned_cols=41 Identities=24% Similarity=0.211 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
.+..|.|+|+.||||||+++.|+..+-..+..+.+++.|.-
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 46789999999999999999999988777888988888753
No 32
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.47 E-value=0.00011 Score=70.05 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=39.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
+..++++|+.|+||||++..|+.++...+.+|.++|+|+..+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 568999999999999999999999999999999999998765
No 33
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.45 E-value=0.00011 Score=68.15 Aligned_cols=38 Identities=29% Similarity=0.465 Sum_probs=33.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
++.|+|+|..||||||+++.|+.++-..|..+.++|.|
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 56899999999999999999999987778777777776
No 34
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.45 E-value=7.3e-05 Score=64.91 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYL 71 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~l 71 (376)
.+..++++|++|+|||||++.+++.+. ..|..+.++
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 367899999999999999999999987 667666663
No 35
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.45 E-value=0.0002 Score=63.87 Aligned_cols=40 Identities=23% Similarity=0.267 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.++..|.|+|+.|||||||++.|+..+-..|..+.++..|
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d 59 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence 3578999999999999999999999875444445565555
No 36
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.43 E-value=9.9e-05 Score=66.21 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=34.1
Q ss_pred EEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 39 IAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 39 ~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
+|.|++.| |+||||++..|+..+.++| +|+++|+|+..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~ 40 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNR 40 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTC
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCC
Confidence 57777766 9999999999999999999 99999999864
No 37
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=97.43 E-value=0.00014 Score=71.20 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=38.6
Q ss_pred CCCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 36 PPPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.+++|.|.|+| |+||||++..|+..+.++|.+|+++|+| .++.
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D-~~~~ 185 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE-QCGT 185 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC-TTCC
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC-CCCC
Confidence 46788898876 8999999999999999999999999999 7765
No 38
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.42 E-value=0.00013 Score=69.27 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=39.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
.+.+++++|+.|+||||+++.|+..+...+.+|.++|+|+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~ 139 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP 139 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH
Confidence 4668999999999999999999999988899999999998653
No 39
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.42 E-value=6.9e-05 Score=66.40 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=28.1
Q ss_pred ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 18 p~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
|..|..+.+.+.-.. .++..|+++|+.||||||+++.|+..+ ...++|.|
T Consensus 8 ~~~~~~~~~~~~~~~--~~~~~i~l~G~~GsGKsTl~~~La~~l-----~~~~i~~d 57 (199)
T 3vaa_A 8 SSGVDLGTENLYFQS--NAMVRIFLTGYMGAGKTTLGKAFARKL-----NVPFIDLD 57 (199)
T ss_dssp ------------------CCCEEEEECCTTSCHHHHHHHHHHHH-----TCCEEEHH
T ss_pred CCCCCCCCCceeEec--CCCCEEEEEcCCCCCHHHHHHHHHHHc-----CCCEEcch
Confidence 446777777665332 246799999999999999999999987 23456665
No 40
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=97.41 E-value=0.00018 Score=69.85 Aligned_cols=42 Identities=29% Similarity=0.245 Sum_probs=36.1
Q ss_pred CCEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 37 PPIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 37 ~~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.++|+|+++| |+||||++..|+-.+.+.|++|.++|+|+ |+.
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~-~~~ 67 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP-AHS 67 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT-TCH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC-CCC
Confidence 4566666555 99999999999999999999999999999 653
No 41
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.40 E-value=0.00019 Score=63.92 Aligned_cols=52 Identities=21% Similarity=0.260 Sum_probs=40.8
Q ss_pred HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 24 ~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
.++.+...+ -.++..++|+|++|+|||||++.++..+...+.+|.|++.+..
T Consensus 11 ~Ld~~~~gg-i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 11 DFDKLIQGG-IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES 62 (235)
T ss_dssp HHHGGGTTS-EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred HHHHHhcCC-CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence 345554311 1246789999999999999999999888888889999998753
No 42
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.40 E-value=0.00014 Score=67.20 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=37.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
++|.|.|.-|+||||++..|+..+.++|++|+++|+|+..+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~ 43 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADS 43 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCS
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCH
Confidence 357778877999999999999999999999999999997654
No 43
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.40 E-value=0.00018 Score=68.74 Aligned_cols=42 Identities=24% Similarity=0.232 Sum_probs=38.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
.+..|+|+|+.||||||+++.|+.++-..+.+|.+.+.|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r 142 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR 142 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCC
Confidence 467999999999999999999999998888999999999743
No 44
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.40 E-value=0.00015 Score=70.00 Aligned_cols=42 Identities=26% Similarity=0.242 Sum_probs=38.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
++..++++|+.||||||+++.|+.++...+.+|.+.+.|+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r 169 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR 169 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence 477999999999999999999999998889999999998743
No 45
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.36 E-value=0.0002 Score=64.08 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..++|+|++|+||||+++.+++.+...+..+.+++++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 367899999999999999999999998888888888774
No 46
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=97.35 E-value=0.00018 Score=67.38 Aligned_cols=42 Identities=29% Similarity=0.287 Sum_probs=37.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
++|.|.|.-|+||||++..|+..|.+.|++|+++|+|+..+.
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~ 44 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADS 44 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCH
Confidence 467788877999999999999999999999999999997654
No 47
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.35 E-value=0.00021 Score=68.12 Aligned_cols=41 Identities=29% Similarity=0.287 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
++..++++|+.||||||+++.|+.++-..+.+|.+.+.|+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 46799999999999999999999998888899999988864
No 48
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.35 E-value=0.00012 Score=63.52 Aligned_cols=36 Identities=17% Similarity=0.240 Sum_probs=30.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
..|+|+|+.||||||+++.|+.++-..|..+.+++.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 368999999999999999999998766777777753
No 49
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.34 E-value=0.00035 Score=59.68 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=32.8
Q ss_pred ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141 18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ 63 (376)
Q Consensus 18 p~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~ 63 (376)
.+.+..+.+.+... .+..++|+|++|+||||+++.+++.+..
T Consensus 28 ~~~~~~l~~~l~~~----~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 28 DEEIRRTIQVLQRR----TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHHHHHTSS----SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcC----CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34667776666431 2467999999999999999999999865
No 50
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.33 E-value=8.7e-05 Score=63.65 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=27.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|.|+|+.||||||+++.|+..+ ...++|.|
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l-----~~~~id~d 36 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL-----NMEFYDSD 36 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT-----TCEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh-----CCCEEecc
Confidence 4579999999999999999999875 34677765
No 51
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.32 E-value=0.00039 Score=59.14 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=39.5
Q ss_pred hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
..-.+++..+..- .+..++++|+.|+|||||++.+++.+...|.++.|++..
T Consensus 22 g~n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~ 73 (149)
T 2kjq_A 22 TENAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA 73 (149)
T ss_dssp CCTHHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred CccHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence 3334555555421 477899999999999999999999988777778887653
No 52
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.32 E-value=0.00017 Score=62.42 Aligned_cols=39 Identities=28% Similarity=0.243 Sum_probs=33.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..|.++|+.||||||+++.|+.++-..|..+..+|.|
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 367899999999999999999999886667777777754
No 53
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.31 E-value=0.00015 Score=62.95 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
+..|+|+|+.||||||+++.|+.++-..|....++|+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~ 39 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF 39 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEeh
Confidence 4689999999999999999999987655543556654
No 54
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.31 E-value=0.00018 Score=71.81 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=39.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
++.+|+++|+.|+||||+++.|+.++...+.+|.++|+|+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~ 139 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP 139 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCc
Confidence 3568999999999999999999999998899999999998653
No 55
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.28 E-value=0.00015 Score=68.65 Aligned_cols=40 Identities=18% Similarity=0.321 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.+..|.|.|+.||||||+++.|.+.+-..+.++.++|+|-
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~ 43 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA 43 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecch
Confidence 3578999999999999999999998766677789999883
No 56
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.27 E-value=0.00025 Score=68.54 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=38.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.+.+|.++|+.|+||||+++.|+..+...+.+|.+++.|++.+.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~ 98 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV 98 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC
Confidence 47899999999999999999999999888999999999997653
No 57
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.27 E-value=0.00029 Score=68.87 Aligned_cols=41 Identities=29% Similarity=0.287 Sum_probs=37.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
++.+++++|+.||||||+++.|+.++-..+.+|.+.+.|+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence 46799999999999999999999998888899999998864
No 58
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.26 E-value=0.00034 Score=63.15 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=36.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
++..++|+|++|+|||||+..++..+++.+.+|.|++.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 46789999999999999999998888888999999998754
No 59
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.25 E-value=0.0003 Score=71.42 Aligned_cols=41 Identities=27% Similarity=0.281 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
.+.+++|+|+.||||||+++.|+.++...+++|.+.+.|+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~ 332 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 332 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTT
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCccc
Confidence 46799999999999999999999998888899999988864
No 60
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.24 E-value=0.00023 Score=63.59 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~lDlD 74 (376)
.+..|+|+|+.||||||+++.|+.++- ..|..+.++|.|
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 367899999999999999999999986 677778888855
No 61
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.23 E-value=0.00021 Score=60.87 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=26.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
..|+|+|+.||||||+++.|+..+ ...++|.|
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l-----~~~~i~~d 33 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL-----KYPIIKGS 33 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH-----CCCEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-----CCeeecCc
Confidence 368999999999999999999886 24466666
No 62
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.23 E-value=0.00019 Score=63.46 Aligned_cols=34 Identities=15% Similarity=0.400 Sum_probs=28.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
+..|+|+|+.||||||+++.|+..+ ...++|.|.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l-----g~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC-----GYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH-----TCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-----CCEEEeCCc
Confidence 4689999999999999999999986 345677764
No 63
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.23 E-value=0.00012 Score=63.64 Aligned_cols=32 Identities=44% Similarity=0.670 Sum_probs=27.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
++|+|+|+.||||||+++.|+.++ ...++|.|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l-----g~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL-----GVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH-----TCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc-----CCCEEeCc
Confidence 579999999999999999999976 24467777
No 64
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.23 E-value=0.00025 Score=62.77 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=29.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
++..|.|+|+.||||||+++.|+..+ ...++|.|.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~ 62 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADA 62 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccc
Confidence 46799999999999999999999876 345667664
No 65
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.22 E-value=0.00028 Score=62.18 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=32.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
..++++|+.|+||||+++.+++.+...+..+.++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 689999999999999999999999888888888755
No 66
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.22 E-value=0.00023 Score=61.21 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=28.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
++..|.|+|+.||||||+++.|+..+ ...++|.|
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d 40 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGD 40 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCc
Confidence 36789999999999999999999875 34567776
No 67
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.21 E-value=0.00041 Score=62.71 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=34.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~lDlD~ 75 (376)
++..+.|+|++|||||||++.|+...+ ..+..+.+++.+.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 477999999999999999999997666 7788888887653
No 68
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.20 E-value=0.00027 Score=62.71 Aligned_cols=38 Identities=34% Similarity=0.400 Sum_probs=30.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
++..|.|+|+.|||||||++.|+..+- .++.|++.|.-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~---~~i~~v~~d~~ 42 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG---ERVALLPMDHY 42 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG---GGEEEEEGGGC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEecCcc
Confidence 467899999999999999999998761 14777777753
No 69
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=97.20 E-value=0.00029 Score=69.32 Aligned_cols=43 Identities=21% Similarity=0.249 Sum_probs=36.8
Q ss_pred CCCEEEEEcCC-CCcHHHHHHHHHHHHH------HcCCcEEEEcCCCCCCC
Q 017141 36 PPPIAFICGAK-NCGKTTFSRHLVNVLL------QRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll------~~~~~v~~lDlD~GQ~~ 79 (376)
.+.+|.|++.| |+||||++-.|+-.+. +.|++|+++|+|+ |+.
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~-q~~ 156 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDP-QSS 156 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECT-TCH
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC-CCC
Confidence 35688888777 7999999999999988 4799999999999 653
No 70
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.19 E-value=0.00043 Score=59.13 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=32.1
Q ss_pred hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141 19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ 63 (376)
Q Consensus 19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~ 63 (376)
+++..+++.+... .+..++|+|++|+||||+++.+++.+..
T Consensus 29 ~~~~~l~~~l~~~----~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 29 TEIRRAIQILSRR----TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHHHHHTSS----SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCC----CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4566666666431 2567899999999999999999999865
No 71
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=97.16 E-value=0.00037 Score=67.07 Aligned_cols=39 Identities=28% Similarity=0.232 Sum_probs=34.0
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
.+|+|+++| |+||||++..|+-.+.+.|++|.++|+|+.
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 455555555 899999999999999999999999999996
No 72
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.15 E-value=0.00025 Score=61.98 Aligned_cols=35 Identities=20% Similarity=0.224 Sum_probs=29.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+.+|+++|+.||||||+++.|+..++ ...++|+|
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~----g~~~id~d 43 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELD----GFQHLEVG 43 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST----TEEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC----CCEEeeHH
Confidence 367899999999999999999998732 46788877
No 73
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=97.14 E-value=0.00047 Score=66.05 Aligned_cols=42 Identities=21% Similarity=0.206 Sum_probs=38.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
.++|.|.|-=|+||||.+-.|+-.|.+.|++|.+||+||.-+
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~ 89 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHD 89 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCC
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCc
Confidence 568899997799999999999999999999999999999544
No 74
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.14 E-value=0.00047 Score=61.13 Aligned_cols=37 Identities=35% Similarity=0.398 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.+..++|+|+.|+|||||++.|+. ..+.+|.|++.+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 477999999999999999999998 6688999999876
No 75
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.13 E-value=0.00021 Score=62.01 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=27.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
++.|+++|+.||||||+++.|+.++ ...++|.|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l-----~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT-----KRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH-----CCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-----CCCEEECh
Confidence 5689999999999999999999887 33456655
No 76
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.13 E-value=0.00028 Score=61.43 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
++..+.|+|+.||||||++|.|+.. .+....++|.|
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 3678999999999999999999875 22334555554
No 77
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.13 E-value=0.00021 Score=61.59 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=27.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
++|+|+|+.||||||+++.|+..+ ...++|.|
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l-----~~~~~d~d 36 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL-----DLVFLDSD 36 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH-----TCEEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc-----CCCEEccc
Confidence 369999999999999999999886 35677776
No 78
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.13 E-value=0.00049 Score=66.80 Aligned_cols=44 Identities=23% Similarity=0.227 Sum_probs=37.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
.+++|.|+|++|+|||||...|+..+...+.+++++..||+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~ 116 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCT 116 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCC
Confidence 47899999999999999999999999888999999999998653
No 79
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.12 E-value=0.00062 Score=62.25 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=37.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
..+|++.|+.|+||||++-.++.++.+.|++|.++|+|+
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 457999999999999999999999999999999999999
No 80
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.11 E-value=0.00023 Score=61.72 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|+++|+.||||||+++.|+.++ ...++|.|
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l-----~~~~i~~d 36 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL-----GFKKLSTG 36 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH-----TCEEECHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-----CCeEecHH
Confidence 5689999999999999999999876 24566665
No 81
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.11 E-value=0.00042 Score=61.63 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=34.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
.++|+|+|..|+|||||+..|++.+... .++..++.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~~ 69 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVVS 69 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCCC
Confidence 5799999999999999999999987544 789999999863
No 82
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=97.10 E-value=0.00029 Score=68.67 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=36.6
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
++|.|++.| |+||||++..|+-.+.+.|++|++||+|+..+.
T Consensus 2 kvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~ 44 (361)
T 3pg5_A 2 RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNA 44 (361)
T ss_dssp EEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTT
T ss_pred eEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCCh
Confidence 357777666 799999999999999999999999999988554
No 83
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=97.10 E-value=0.00022 Score=70.38 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=30.5
Q ss_pred CCCEEEEEcCC-CCcHHHHHHHHHHHHH------HcCCcEEEEcCCCCCCC
Q 017141 36 PPPIAFICGAK-NCGKTTFSRHLVNVLL------QRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 36 ~~~~vlV~G~~-~sGKSTl~r~L~N~ll------~~~~~v~~lDlD~GQ~~ 79 (376)
.+.+|.|++.| |+||||++-.|+-.+. +.|++|+++|+|+ |+.
T Consensus 110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~-~~~ 159 (403)
T 3ez9_A 110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDP-QAS 159 (403)
T ss_dssp SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESS-SSG
T ss_pred CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCC-CCC
Confidence 35678888777 8999999999999988 6899999999999 554
No 84
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.09 E-value=0.00031 Score=61.23 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=27.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|+|+|+.||||||+++.|+.++ ...++|.|
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l-----~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY-----GYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-----CCeEEcHH
Confidence 6789999999999999999999886 23466665
No 85
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.08 E-value=0.00029 Score=61.16 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=26.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|+|+|+.||||||+++.|+.++ ...++|.|
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d 35 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY-----GYTHLSAG 35 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-----CCeEEeHH
Confidence 4689999999999999999999876 23456654
No 86
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.07 E-value=0.0008 Score=64.99 Aligned_cols=53 Identities=26% Similarity=0.223 Sum_probs=43.3
Q ss_pred HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 23 ~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
.+++.+.-.. ..+.++.|+|++|+|||||.+.|+..+...+.++.++..|++.
T Consensus 43 ~~l~~i~~~~--~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 43 DLIDAVLPQT--GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp HHHHHHGGGC--CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred HHHHhCCccc--CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 4555554222 3478999999999999999999999988888999999999864
No 87
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=97.07 E-value=0.00044 Score=67.32 Aligned_cols=41 Identities=27% Similarity=0.253 Sum_probs=34.6
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHH--HcCCcEEEEcCCCCCCC
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLL--QRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll--~~~~~v~~lDlD~GQ~~ 79 (376)
.+|+|+++| |+||||++..|+-.+. +.|++|.++|+|++ +.
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~-~~ 61 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA-HN 61 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CC
Confidence 455555444 8999999999999999 89999999999996 53
No 88
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.06 E-value=0.00035 Score=58.71 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=34.7
Q ss_pred ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141 18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKK 67 (376)
Q Consensus 18 p~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~ 67 (376)
.+.|.++.+.+..-.. .+.-|++.|++|+|||+++|.+.+...+.+..
T Consensus 7 s~~~~~~~~~~~~~a~--~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~ 54 (145)
T 3n70_A 7 SEWINQYRRRLQQLSE--TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGE 54 (145)
T ss_dssp SHHHHHHHHHHHHHTT--CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSC
T ss_pred CHHHHHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHHHhCCccCCC
Confidence 4578888876643221 23469999999999999999999876544433
No 89
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.05 E-value=0.00032 Score=61.28 Aligned_cols=33 Identities=33% Similarity=0.377 Sum_probs=27.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|+|+|+.||||||+++.|+.++ ...++|.|
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l-----~~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY-----GFTHLSTG 44 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH-----TCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh-----CCeEEcHH
Confidence 4689999999999999999999987 24566654
No 90
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.05 E-value=0.00085 Score=62.50 Aligned_cols=41 Identities=12% Similarity=0.261 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~G 76 (376)
++..++|+|++||||||+.+.|+...-.. ..++.+.+-+++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE 65 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce
Confidence 46799999999999999999999987655 567777665543
No 91
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.05 E-value=0.00039 Score=59.60 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=26.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
..|+|+|+.||||||+++.|+.+ .....+++.|
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~d 35 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK----NPGFYNINRD 35 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH----STTEEEECHH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh----cCCcEEecHH
Confidence 47999999999999999999883 2345677765
No 92
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.05 E-value=0.00035 Score=60.08 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=26.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|+|+|+.||||||+++.|+..+ +.....++.|
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence 4679999999999999999999876 2233344555
No 93
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.04 E-value=0.00046 Score=64.72 Aligned_cols=42 Identities=19% Similarity=0.194 Sum_probs=36.8
Q ss_pred CCEEEEEc---CCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 37 PPIAFICG---AKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 37 ~~~vlV~G---~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
+++|.|++ .-|+||||++..|+..+.+.|++|+++|+|+..+
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~ 78 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQAT 78 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 45777877 5589999999999999999999999999999754
No 94
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.04 E-value=0.0006 Score=59.99 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQ 63 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~ 63 (376)
+..|+|+|+.||||||+++.|+.++-.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999999998743
No 95
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.04 E-value=0.00069 Score=58.74 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
.|.|+|+.||||||+++.|++++-..|..+...|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5899999999999999999999866666655443
No 96
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.03 E-value=0.00047 Score=65.64 Aligned_cols=39 Identities=33% Similarity=0.434 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH--HcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLL--QRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll--~~~~~v~~lDlD 74 (376)
.+..|.|+|+.|||||||++.|+..+- -....+.++++|
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d 119 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD 119 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecC
Confidence 467999999999999999999998764 245568888887
No 97
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.02 E-value=0.00039 Score=62.32 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
.+..|+|+|+.||||||+++.|+.++ ...++|+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~ 35 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF-----HAAHLAT 35 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc-----CceEEeh
Confidence 36789999999999999999999986 2345665
No 98
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.02 E-value=0.00095 Score=64.19 Aligned_cols=39 Identities=36% Similarity=0.382 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH--cCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ--RYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~--~~~~v~~lDlD 74 (376)
.+..|.|+|+.|||||||++.|...+-. .+.++.++..|
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 3558999999999999999998765422 24567777776
No 99
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.01 E-value=0.00033 Score=59.86 Aligned_cols=32 Identities=41% Similarity=0.730 Sum_probs=27.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
..|+|+|+.||||||+++.|+.++ ...++|.|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l-----g~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL-----GYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH-----TCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-----CCcEEccc
Confidence 469999999999999999999986 24577766
No 100
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.01 E-value=0.00036 Score=60.33 Aligned_cols=33 Identities=24% Similarity=0.483 Sum_probs=27.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
++.|+|+|+.||||||+++.|+.++ ...++|+|
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~-----~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS-----GLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh-----CCeEEEHH
Confidence 5679999999999999999999886 34566665
No 101
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.00 E-value=0.00042 Score=63.69 Aligned_cols=38 Identities=32% Similarity=0.479 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHH-----cCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQ-----RYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~-----~~~~v~~lDlD 74 (376)
+.+|.|+|+.||||||+|+.|+..+-- .+.++.++|+|
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D 64 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD 64 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecC
Confidence 468999999999999999999987522 23567888887
No 102
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.00 E-value=0.00031 Score=61.05 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+..|+|+|+.||||||+++.|+.++
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999886
No 103
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.98 E-value=0.00035 Score=59.52 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+|+|+|+.||||||+++.|+.++ ...++|+|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l-----~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL-----NIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH-----TCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh-----CCCEEECc
Confidence 68999999999999999999986 23456665
No 104
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.97 E-value=0.00093 Score=59.03 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
.+..|+|+|+.||||||+++.|+.++-..+..+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~ 42 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL 42 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 36789999999999999999999998666666643
No 105
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.97 E-value=0.00032 Score=62.69 Aligned_cols=59 Identities=25% Similarity=0.167 Sum_probs=41.7
Q ss_pred CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
+.+.+.+..+.+...-.....++|+|+|..|+|||||+..|++.+... .++..++.|++
T Consensus 18 ~~~~~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 18 ILKANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI 76 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred hhhhhHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence 344555555544321111135799999999999999999999887554 67889998875
No 106
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.97 E-value=0.00039 Score=64.08 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=39.2
Q ss_pred CChhHHHHHHHhh----cc-CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 17 IPREWSDAADSIA----YD-SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 17 ip~~W~~~~~~i~----~~-~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.++++.++.+.+. .+ .....+..|+++|+.||||||+++.|+..+ +..+.++|.|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~ 67 (253)
T 2p5t_B 7 TDSEFKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDS 67 (253)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGG
T ss_pred CHHHHHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHH
Confidence 4556666666552 11 122236689999999999999999999875 23467788874
No 107
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.95 E-value=0.00038 Score=59.52 Aligned_cols=33 Identities=30% Similarity=0.391 Sum_probs=27.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
-..|+|+|+.||||||+++.|+.++ ..-++|+|
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l-----g~~~id~D 39 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL-----KLEVLDTD 39 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH-----TCCEEEHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh-----CCCEEECh
Confidence 4589999999999999999999986 23466765
No 108
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.94 E-value=0.00044 Score=61.49 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
..+|.|+|+.||||||+++.|+..+ ...++|+|-
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l-----g~~vid~D~ 45 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY-----GAHVVNVDR 45 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc-----CCEEEECcH
Confidence 5789999999999999999999875 467888873
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.92 E-value=0.0018 Score=63.02 Aligned_cols=63 Identities=14% Similarity=0.275 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCC
Q 017141 4 YMPQTENPSPAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDV 75 (376)
Q Consensus 4 ~~~~~~~~~~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~ 75 (376)
|++........+..|+.+.+++ .. ++..++|+|++||||||+.+.|++.+-.. +..+..++ |+
T Consensus 98 ~~~~~~~~l~~lg~~~~l~~l~----~~----~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~ 161 (356)
T 3jvv_A 98 TIPSKVLTMEELGMGEVFKRVS----DV----PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DP 161 (356)
T ss_dssp EECCSCCCTTTTTCCHHHHHHH----HC----SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SS
T ss_pred ECCCCCCCHHHcCChHHHHHHH----hC----CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-Cc
Confidence 3444445556677777555542 11 24589999999999999999999998765 45554443 44
No 110
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.92 E-value=0.00037 Score=61.44 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=25.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.+|.|+|+.||||||+++.|+. + ...++|+|-
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~-----g~~~i~~d~ 33 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-L-----GAYVLDADK 33 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-T-----TCEEEEHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-C-----CCEEEEccH
Confidence 3799999999999999999998 4 355666653
No 111
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.92 E-value=0.00071 Score=59.18 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=31.5
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKK 67 (376)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~ 67 (376)
.+..+.+.+... ..+.+++.|+.|+||||+++.+++.+...+..
T Consensus 25 ~~~~l~~~l~~~----~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~ 68 (226)
T 2chg_A 25 VIQRLKGYVERK----NIPHLLFSGPPGTGKTATAIALARDLFGENWR 68 (226)
T ss_dssp HHHHHHHHHHTT----CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHhCC----CCCeEEEECCCCCCHHHHHHHHHHHHhccccc
Confidence 455555544422 23349999999999999999999998765433
No 112
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.90 E-value=0.00049 Score=60.67 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=26.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|+|+|+.||||||+++.|+.++ +. .++|+|
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l---~~--~~i~~d 52 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL---GI--PQISTG 52 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH---TC--CEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CC--cEEehh
Confidence 5689999999999999999999986 22 356654
No 113
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.90 E-value=0.00056 Score=63.23 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
.|+|+|+.||||||+++.|+..+ ...+++.|--|
T Consensus 3 li~I~G~~GSGKSTla~~La~~~-----~~~~i~~D~~~ 36 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET-----GWPVVALDRVQ 36 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH-----CCCEEECCSGG
T ss_pred EEEEECCCCcCHHHHHHHHHhcC-----CCeEEeccHHh
Confidence 68999999999999999999876 34577887543
No 114
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.90 E-value=0.001 Score=57.97 Aligned_cols=33 Identities=30% Similarity=0.262 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l 71 (376)
.|.|.|+.||||||+++.|.+++-..|..+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 589999999999999999999987777777644
No 115
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.90 E-value=0.00049 Score=59.57 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=27.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|.|+|+.||||||+++.|+.++ ...++|.|
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l-----~~~~i~~d 38 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF-----GWVHLSAG 38 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh-----CCeEeeHH
Confidence 4689999999999999999999876 34566664
No 116
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.89 E-value=0.002 Score=62.33 Aligned_cols=85 Identities=14% Similarity=0.197 Sum_probs=53.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEeccc-CCCCCCCCCCCCCceeEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDT-LTPDLTIPCLKTPKRCYFFGDV 115 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~-~~~~~~~~~~~~p~~~~f~G~~ 115 (376)
++.|+|+||.|||||||++.|+..+ ..-++|+|--|---+. .+.+. |.+. . .-..| .||++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~qvYr~m------dIgTakp~~e-E--~~gvp--hhlidi~ 103 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF-----PLEVINSDKMQVYKGL------DITTNKISVP-D--RGGVP--HHLLGEV 103 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS-----CEEEEECCSSTTBSSC------TTTTTCCCSG-G--GTTCC--EESSSCB
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC-----CCcEEcccccccccce------eeecCCCCHH-H--HcCCC--Eeecccc
Confidence 4689999999999999999998875 5678999977632111 11111 1110 0 00122 4788888
Q ss_pred CC-C--CChHHHHHHHHHHHHHHHH
Q 017141 116 SS-K--RDPTAYLKYITTLYDYYRK 137 (376)
Q Consensus 116 sp-~--~~~~~y~~~v~~L~~~~~~ 137 (376)
.| . -+...|.+...++++.+..
T Consensus 104 ~~~~e~~s~~~F~~~a~~~i~~i~~ 128 (339)
T 3a8t_A 104 DPARGELTPADFRSLAGKAVSEITG 128 (339)
T ss_dssp CGGGCCCCHHHHHHHHHHHHHHHHH
T ss_pred CcccCccCHHHHHHHHHHHHHHHHh
Confidence 77 3 2566777777766655443
No 117
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.89 E-value=0.0011 Score=64.51 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=36.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.+..++|.|+.|+||||||..++..+.+.+.+|+|+|++-
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 4678999999999999999999999988899999999974
No 118
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.89 E-value=0.00044 Score=60.90 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|+|+|+.||||||+++.|+.++ ...++|+|
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~-----g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY-----SFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS-----SCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-----CceEEeHH
Confidence 5689999999999999999999875 34677766
No 119
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.87 E-value=0.0013 Score=61.77 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=34.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~ 75 (376)
++..++|+|++|+|||||++.++..+... |.+|.|++.+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 47799999999999999999999988765 66899988763
No 120
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.86 E-value=0.0011 Score=64.79 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=36.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
.+..++|.|+.|+|||||+..++..+...+.+|+|+|....
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 46799999999999999999999999888999999987643
No 121
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.86 E-value=0.00061 Score=60.96 Aligned_cols=25 Identities=28% Similarity=0.531 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+.+|.|+|+.||||||+++.|+..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 122
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.85 E-value=0.00071 Score=63.81 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..|+|+|+.||||||+++.|+..+ .....+||.|
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D 67 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDND 67 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Confidence 35689999999999999999998864 1245666664
No 123
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.85 E-value=0.00054 Score=60.70 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=29.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.+..|.|+|+.||||||+++.|+..+ ..+.+++.|.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~----~~~~~i~~D~ 55 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL----PNCSVISQDD 55 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS----TTEEEEEGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc----CCcEEEeCCc
Confidence 35689999999999999999988753 2578888883
No 124
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.84 E-value=0.00075 Score=64.12 Aligned_cols=37 Identities=27% Similarity=0.253 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
+..+++.|++|+||||+++.+++.+...+..+.++++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 4679999999999999999999999887777887764
No 125
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.83 E-value=0.0013 Score=57.94 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVA 69 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~ 69 (376)
.+..|.|+|+.||||||+++.|+.++-..+..+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 3679999999999999999999998765555553
No 126
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.83 E-value=0.00053 Score=58.01 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHL 57 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L 57 (376)
+.|+|+|+.||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 127
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.81 E-value=0.00076 Score=59.17 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
.+..|.|+|+.||||||+++.|+.++ .|..+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~ 35 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI--PANTIKY 35 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEE
Confidence 36789999999999999999999876 3344444
No 128
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.81 E-value=0.00055 Score=60.89 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|+|+|+.||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998876
No 129
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.80 E-value=0.0011 Score=68.47 Aligned_cols=42 Identities=31% Similarity=0.423 Sum_probs=36.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPE 79 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~ 79 (376)
...+++.|..|+||||++-.|+-.+.+.|++|.+||+|+ ++.
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~-~~~ 49 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP-ASN 49 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT-TCC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC-CcC
Confidence 456777777799999999999999999999999999999 454
No 130
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.78 E-value=0.0015 Score=63.64 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=36.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.+..++|.|+.|+||||||..++..+.+.+.+|+|+|++-
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4678999999999999999999999999999999999964
No 131
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.77 E-value=0.00058 Score=61.25 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|+|+|+.||||||+++.|+.++ ...++|+|
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l-----~~~~i~~d 37 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY-----QLAHISAG 37 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH-----CCEECCHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-----CCceecHH
Confidence 5689999999999999999999986 23455553
No 132
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.77 E-value=0.00057 Score=61.60 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=27.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|+|+|+.||||||+++.|+.++ ...++|+|
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d 39 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF-----ELKHLSSG 39 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS-----SSEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-----CCeEEech
Confidence 5789999999999999999999875 33466654
No 133
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.76 E-value=0.0014 Score=62.02 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=25.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR 64 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~ 64 (376)
.+..|.|+|+.|||||||++.|...+-..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 46789999999999999999999988654
No 134
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.76 E-value=0.00079 Score=61.71 Aligned_cols=33 Identities=30% Similarity=0.219 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
.+.+|+|+|+.||||||+|+.|++++ ...++++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~-----g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH-----CYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH-----CCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh-----CCeEEec
Confidence 46799999999999999999999876 3445554
No 135
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.75 E-value=0.002 Score=61.65 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=38.8
Q ss_pred hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc---CCcEEEEcCC
Q 017141 19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR---YKKVAYLDTD 74 (376)
Q Consensus 19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~---~~~v~~lDlD 74 (376)
++.+.+.+.+........+..++|.|+.|+||||+++.+++.+... +..+.++++.
T Consensus 27 ~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 27 DQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp HHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred HHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 3455555544321011235689999999999999999999988766 5667777763
No 136
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.73 E-value=0.001 Score=58.06 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=31.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
+++.|+|++|||||||++.|+..+-..+.++..+-.|.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 47899999999999999999999887776666666654
No 137
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.73 E-value=0.0047 Score=59.20 Aligned_cols=85 Identities=15% Similarity=0.073 Sum_probs=52.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecc-cCCCCCCCCCCCCCceeEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVD-TLTPDLTIPCLKTPKRCYFFGDV 115 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~-~~~~~~~~~~~~~p~~~~f~G~~ 115 (376)
++.|+|+||+||||||+++.|+..+ ...++++|--|--.+.+ +-+ +|.++- .-.. ..||++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~QvYr~~~------igTakp~~~E---~~gv--phhlid~~ 66 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL-----NGEVISGDSMQVYRGMD------IGTAKITAEE---MDGV--PHHLIDIK 66 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT-----TEEEEECCGGGGBTTCC------TTTTCCCHHH---HTTC--CEESSSCB
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC-----ccceeecCcccceeeee------ecCCCCCHHH---HcCC--CEEEeccC
Confidence 4678999999999999999998775 45678887654322211 011 121100 0011 25888988
Q ss_pred CCCC--ChHHHHHHHHHHHHHHHH
Q 017141 116 SSKR--DPTAYLKYITTLYDYYRK 137 (376)
Q Consensus 116 sp~~--~~~~y~~~v~~L~~~~~~ 137 (376)
+|.. +...|...+.+.++.+.+
T Consensus 67 ~~~e~~s~~~F~~~a~~~i~~i~~ 90 (322)
T 3exa_A 67 DPSESFSVADFQDLATPLITEIHE 90 (322)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred ChhhhccHHHHHHHHHHHHHHHHh
Confidence 8866 455677666666655544
No 138
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.70 E-value=0.001 Score=59.20 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=31.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH------cCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ------RYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~------~~~~v~~lDlD 74 (376)
++..+.|+|++|||||||++.|+..+.. ...++.+++.+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 4679999999999999999999986543 24557777765
No 139
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.70 E-value=0.00061 Score=59.67 Aligned_cols=32 Identities=34% Similarity=0.346 Sum_probs=27.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|.|+|+.||||||+++.|+.. ...++|.|
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~------g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW------GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT------TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC------CCEEEccc
Confidence 568999999999999999999885 35577887
No 140
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.68 E-value=0.0013 Score=59.16 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH------cCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ------RYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~------~~~~v~~lDlD~ 75 (376)
.+..++|+|+.|+|||||++.|+...+. .+.+++|++.+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4679999999999999999999986443 256788888753
No 141
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.68 E-value=0.0054 Score=60.72 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=58.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecc-cCCCCCCCCCCCCCceeEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVD-TLTPDLTIPCLKTPKRCYFFGDV 115 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~-~~~~~~~~~~~~~p~~~~f~G~~ 115 (376)
.+.|+|+||+|||||||++.|+..+ ...++++|--|=--+.+ +.+ .|.++- .-.. ..||++..
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~-----~~~iis~Ds~QvYr~l~------i~T~kp~~~E---~~gv--~hhlid~~ 65 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF-----NGEVINSDSMQVYKDIP------IITNKHPLQE---REGI--PHHVMNHV 65 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH-----TEEEEECCTTTTBSSCT------TTTTCCCGGG---TTTC--CEESCSCB
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC-----CCeEeecCccceecccc------cccCCCCHHH---HcCc--hhhcCCcc
Confidence 4578999999999999999999887 23467877655332111 001 121110 0011 25889988
Q ss_pred CCCC--ChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCC
Q 017141 116 SSKR--DPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPG 161 (376)
Q Consensus 116 sp~~--~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~G 161 (376)
++.. +...|.+.+.++++.+.++ ...|+||=-.|
T Consensus 66 ~~~~~~s~~~F~~~a~~~i~~i~~~------------g~~pilVGGTg 101 (409)
T 3eph_A 66 DWSEEYYSHRFETECMNAIEDIHRR------------GKIPIVVGGTH 101 (409)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHTT------------TCEEEEECSCG
T ss_pred ChHhHhhHHHHHHHHHHHHHHHHhc------------CCCEEEECChH
Confidence 8865 4567777776666554432 45677764444
No 142
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.68 E-value=0.00092 Score=59.91 Aligned_cols=33 Identities=24% Similarity=0.233 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|+|+|+.||||||+++.|+.++ ...++|+|
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d 37 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY-----GLAHLSTG 37 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-----CceEEehh
Confidence 5789999999999999999999987 23455553
No 143
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.68 E-value=0.0019 Score=63.15 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=37.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
.+..++|.|+.|+||||||..++..+.+.+.+|+|+|++..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA 113 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 46789999999999999999999999888999999999853
No 144
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.67 E-value=0.00061 Score=60.70 Aligned_cols=31 Identities=19% Similarity=0.272 Sum_probs=24.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+|+|+|+.||||||+++.|+..+ ...++|.|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-----~~~~i~~d 32 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-----GIPHISTG 32 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-----SCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCcEEeHH
Confidence 68999999999999999998764 34455553
No 145
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.66 E-value=0.0014 Score=59.86 Aligned_cols=26 Identities=23% Similarity=0.462 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..|.|+|+.||||||+++.|+..+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999876
No 146
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.66 E-value=0.0012 Score=59.89 Aligned_cols=33 Identities=27% Similarity=0.249 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|+|+|+.||||||+++.|+.++ ...++++|
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l-----~~~~i~~d 48 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF-----CVCHLATG 48 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH-----TCEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-----CCceecHH
Confidence 5789999999999999999999986 34566654
No 147
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.66 E-value=0.0015 Score=60.09 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=40.5
Q ss_pred CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
-.+.+.++++.+..-.. .+..|+|.|++|+|||+++|.+++.+-+.+....++||.
T Consensus 11 ~~~~~~~~~~~~~~~~~--~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~ 66 (265)
T 2bjv_A 11 EANSFLEVLEQVSHLAP--LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA 66 (265)
T ss_dssp CCHHHHHHHHHHHHHTT--SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred CCHHHHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence 45677777766543221 245699999999999999999999876555566666664
No 148
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.65 E-value=0.0013 Score=57.26 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+..+.|+||.|||||||++.|+..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 6789999999999999999998853
No 149
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.64 E-value=0.0027 Score=60.81 Aligned_cols=56 Identities=25% Similarity=0.335 Sum_probs=38.0
Q ss_pred hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc------CCcEEEEcCC
Q 017141 19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR------YKKVAYLDTD 74 (376)
Q Consensus 19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~------~~~v~~lDlD 74 (376)
++...+.+.+........+..++|+|+.|+||||+++.+++.+... +..+.++++.
T Consensus 26 ~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 26 AELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp HHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 3455555544321111236689999999999999999999998765 4556666653
No 150
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.64 E-value=0.0013 Score=59.98 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+.+|.|+|+.||||||+++.|+.++
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999999876
No 151
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.63 E-value=0.0014 Score=57.51 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.||||||+++.|+..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 46789999999999999999998863
No 152
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.63 E-value=0.0018 Score=66.74 Aligned_cols=39 Identities=33% Similarity=0.444 Sum_probs=35.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
+..|+++|..||||||+++.|..++-..|..+.++|.|.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 568999999999999999999999888888999999873
No 153
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.62 E-value=0.0063 Score=58.18 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=58.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEeccc-CCCCCCCCCCCCCceeEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDT-LTPDLTIPCLKTPKRCYFFGDV 115 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~-~~~~~~~~~~~~p~~~~f~G~~ 115 (376)
++.|+|+||+|||||||++.|+..+ ..-++++|--|--.+.+ +-+. |.++- .-. ...||++..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~-----~~~iis~Ds~qvY~~~~------igTakp~~~E---~~~--v~hhlid~~ 73 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL-----PVELISVDSALIYKGMD------IGTAKPNAEE---LLA--APHRLLDIR 73 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS-----CEEEEECCTTTTBTTCC------TTTTCCCHHH---HHH--SCEETSSCB
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC-----CCcEEeccccccccccc------ccCCCCCHHH---HcC--CCEEEeccC
Confidence 5688999999999999999999875 45678888666432110 0011 11000 000 125788888
Q ss_pred CCCC--ChHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCcEEEeCCC
Q 017141 116 SSKR--DPTAYLKYITTLYDYYRKEYYMFNESESPGRTELPLIVNTPG 161 (376)
Q Consensus 116 sp~~--~~~~y~~~v~~L~~~~~~~~~~~~~~~~~~~~~~~lIInT~G 161 (376)
+|.. +...|...+.+.++.+.++ ...|+||=-.|
T Consensus 74 ~~~e~~s~~~f~~~a~~~i~~i~~~------------g~~pilVGGTg 109 (316)
T 3foz_A 74 DPSQAYSAADFRRDALAEMADITAA------------GRIPLLVGGTM 109 (316)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHHT------------TCEEEEEESCH
T ss_pred CccccccHHHHHHHHHHHHHHHHhC------------CCcEEEEcCcH
Confidence 8865 4556776666655555443 45677765444
No 154
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.62 E-value=0.00094 Score=59.16 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+..|+|+|+.||||||+++.|+..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 47789999999999999999998875
No 155
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=96.61 E-value=0.0018 Score=62.49 Aligned_cols=40 Identities=33% Similarity=0.330 Sum_probs=34.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
..+++.|--|+||||++..|+-.+.+.|++|.++|+|+..
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 4555566669999999999999999999999999999754
No 156
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.60 E-value=0.0011 Score=61.54 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=28.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+.+|.|+|+.||||||+++.|+..+ ...++|.|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l-----g~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL-----GYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH-----TCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc-----CCcEEeCc
Confidence 5789999999999999999999987 44677766
No 157
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.60 E-value=0.001 Score=58.39 Aligned_cols=32 Identities=31% Similarity=0.515 Sum_probs=27.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+.|.|.|+.||||||+++.|+..+ ...++|.|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l-----g~~~~d~d 34 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL-----GVPYLSSG 34 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH-----TCCEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc-----CCceeccc
Confidence 489999999999999999999876 35667766
No 158
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.59 E-value=0.002 Score=61.29 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=33.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHH-HcCCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLL-QRYKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll-~~~~~v~~lDl 73 (376)
+..+++.|++|+|||+|++.+++.+. +.+..|.|+.+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 56899999999999999999999999 88888988765
No 159
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.59 E-value=0.0028 Score=57.00 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH-HHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLV-NVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~-N~ll~~~~~v~~lDlD~ 75 (376)
++..++|+|++|+||||||..++ |.+.+.+.+|+|+.++-
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~ 69 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence 46799999999999999998765 55667788999988864
No 160
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.58 E-value=0.00065 Score=60.09 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
.|.|+|+.||||||+++.|+.++-..|..+.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~ 35 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA 35 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 5899999999999999999999866666666553
No 161
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.57 E-value=0.0015 Score=57.29 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..|.|+|+.||||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 36789999999999999999998865
No 162
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.56 E-value=0.0053 Score=60.86 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.+..|+|+|+.||||||+++.|+..+ ...++|.|.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~-----~~~~i~~D~ 291 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA-----GYVHVNRDT 291 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG-----TCEECCGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc-----CcEEEccch
Confidence 36789999999999999999998764 345666653
No 163
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.52 E-value=0.0012 Score=58.92 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=26.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|.|+|+.||||||+++.|+. + ...++|.|
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-l-----g~~~id~D 35 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-L-----GINVIDAD 35 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-T-----TCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-c-----CCEEEEcc
Confidence 46899999999999999999976 2 35678876
No 164
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.52 E-value=0.0017 Score=60.72 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=32.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
..++++|++|+||||++|.+++.+...+..+.++|+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 4799999999999999999999987766677777764
No 165
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.52 E-value=0.0011 Score=59.09 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|+|+|+.||||||+++.|+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999976
No 166
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=96.52 E-value=0.0025 Score=61.83 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=34.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHH--HcCCcEEEEcCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLL--QRYKKVAYLDTDVG 76 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll--~~~~~v~~lDlD~G 76 (376)
..+++.|.-|+||||++..|+-.+. +.|++|.++|+|+.
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 5666677779999999999999999 89999999999974
No 167
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.51 E-value=0.0014 Score=58.00 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+||.|||||||++.|+...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998864
No 168
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.51 E-value=0.0014 Score=60.47 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+.+|.|+|+.||||||+++.|+..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 46799999999999999999999765
No 169
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.51 E-value=0.0018 Score=67.06 Aligned_cols=40 Identities=30% Similarity=0.318 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcC-CcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRY-KKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~-~~v~~lDlD~ 75 (376)
.+..|+++|..||||||+++.|..++-..| ..+.++|.|.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 467899999999999999999999988777 7888998773
No 170
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.51 E-value=0.0013 Score=57.27 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+.++|+.||||||++|.|+.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999976
No 171
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.50 E-value=0.00091 Score=59.09 Aligned_cols=32 Identities=34% Similarity=0.438 Sum_probs=25.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
..|.|+|+.||||||+++.|+. + | ..++|.|-
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-l---g--~~~id~d~ 34 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-L---G--VPLVDADV 34 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-T---T--CCEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-C---C--CcccchHH
Confidence 3689999999999999999987 2 3 45677763
No 172
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.49 E-value=0.0035 Score=62.37 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=45.4
Q ss_pred CCccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCc
Q 017141 13 PAIYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPG 84 (376)
Q Consensus 13 ~~~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG 84 (376)
..+.++.+-..+++.+.. .++..++|+|++||||||+.+.|++.+-....++.+++-++ ++..++
T Consensus 147 ~~Lg~~~~~~~~L~~l~~----~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~i---e~~~~~ 211 (418)
T 1p9r_A 147 HSLGMTAHNHDNFRRLIK----RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPI---EFDIDG 211 (418)
T ss_dssp GGSCCCHHHHHHHHHHHT----SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSC---CSCCSS
T ss_pred HHcCCCHHHHHHHHHHHH----hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccc---hhccCC
Confidence 345566655556666632 23568999999999999999999998755556777777444 344444
No 173
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.48 E-value=0.0018 Score=56.49 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.|.|+|+.||||||+++.|+.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999987
No 174
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.47 E-value=0.0033 Score=60.49 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHc--------CCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQR--------YKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~--------~~~v~~lDl 73 (376)
+..++|.|+.|+||||+++.+++.+.+. +..+.++++
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 5689999999999999999999998765 566666665
No 175
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.47 E-value=0.003 Score=58.70 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLL 62 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll 62 (376)
.+..++|+|+.|+|||||++.++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467999999999999999999998543
No 176
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=96.47 E-value=0.0027 Score=56.54 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=31.9
Q ss_pred CEEEEEcCC-CCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 38 PIAFICGAK-NCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 38 ~~vlV~G~~-~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
++|+|+|.| |+||||++-.|+..+.++|++|.++|
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 468999987 89999999999999999999999975
No 177
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.47 E-value=0.0019 Score=56.54 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.|+|++|||||||++.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999987
No 178
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.46 E-value=0.0015 Score=57.63 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=27.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
++|+|+.+|||||||..|+.. +.+++|++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence 799999999999999998754 66788888753
No 179
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.46 E-value=0.0026 Score=60.73 Aligned_cols=40 Identities=30% Similarity=0.366 Sum_probs=29.4
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHHHc-C-CcEEEEcCC
Q 017141 35 SPPPIAFICGAKNCGKTTFSRHLVNVLLQR-Y-KKVAYLDTD 74 (376)
Q Consensus 35 ~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~-~~v~~lDlD 74 (376)
..+..|.|+|+.|||||||++.|+..+-.. | .++.++-.|
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 357799999999999999999998876432 2 234454444
No 180
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.45 E-value=0.0035 Score=60.28 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=31.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD 74 (376)
+.++|+|+.|+||||+++.+++.+... +..+.++++.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~ 82 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF 82 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc
Confidence 389999999999999999999987665 4677777764
No 181
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.44 E-value=0.0012 Score=56.77 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=18.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+..|+|+|..||||||+++.|+.++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998875
No 182
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.42 E-value=0.0021 Score=57.25 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..|.|+||.||||||+++.|+..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 47789999999999999999998753
No 183
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.40 E-value=0.0022 Score=62.08 Aligned_cols=35 Identities=23% Similarity=0.272 Sum_probs=30.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
+.|.|+|+.|||||||++.|+..+ .+.++++|--|
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l-----~~~iis~Ds~q 42 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF-----NGEIISGDSMQ 42 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT-----TEEEEECCSST
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc-----CCceecccccc
Confidence 479999999999999999999876 47889998654
No 184
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.40 E-value=0.0027 Score=64.75 Aligned_cols=59 Identities=10% Similarity=0.056 Sum_probs=42.3
Q ss_pred ccCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH-c-CCcEEEEcCCC
Q 017141 15 IYIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ-R-YKKVAYLDTDV 75 (376)
Q Consensus 15 ~~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~-~-~~~v~~lDlD~ 75 (376)
..-|+-|..+.+... .....+..|.+.|..||||||++|.|+.+|-. . ++.+.|+|.|-
T Consensus 375 f~rpeV~~vLr~~~~--~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 375 FSYPEVVKILRESNP--PRPKQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp TSCHHHHHHHHHHSC--CGGGCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccChhhHHHHHHhcc--cccccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 333445555555332 11124678999999999999999999999864 4 46788999986
No 185
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.40 E-value=0.0021 Score=58.26 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+.+|.|+|+.||||||+++.|+..+ ...++|.|
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l-----g~~~~d~d 48 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF-----GFTYLDTG 48 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH-----CCEEEEHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc-----CCceecCC
Confidence 46799999999999999999999876 35677765
No 186
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.40 E-value=0.004 Score=54.69 Aligned_cols=36 Identities=31% Similarity=0.294 Sum_probs=30.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
+..++++|+.|+||||++..++.++...+.+|.++-
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 568999999999999999777777777888888763
No 187
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.37 E-value=0.0036 Score=61.20 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD 74 (376)
++..++|+|++||||||+.+.|++.+-.. ..++.+++-+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 174 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc
Confidence 46789999999999999999999987665 5677777743
No 188
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.37 E-value=0.0024 Score=61.37 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=30.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
+.|+|+|+.||||||+++.|+..+ ...++|+|--|
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l-----~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL-----PCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS-----CEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-----CCcEEeccchh
Confidence 579999999999999999999875 47789998665
No 189
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.36 E-value=0.0024 Score=55.64 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
..+.|+||.||||||+++.|+..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899999999999999999865
No 190
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.35 E-value=0.0021 Score=57.94 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.|+|+|+.||||||+++.|+.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999986
No 191
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.34 E-value=0.0042 Score=56.57 Aligned_cols=36 Identities=25% Similarity=0.079 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l 71 (376)
++..++++|+.|+||||++..+++++...|.+|+++
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 467899999999999999999999999999999998
No 192
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.34 E-value=0.0028 Score=57.41 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+++|+|+||+||||+|.|+.|+.++
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46788899999999999999999986
No 193
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.33 E-value=0.0042 Score=58.07 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRY 65 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~ 65 (376)
.+..++++|++|+||||+++.+++.+-..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLG 95 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 355799999999999999999999987644
No 194
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.33 E-value=0.002 Score=60.49 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=26.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
+..|.|+|+.||||||+++.|+. + | ..++|+|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~-l---g--~~~id~D~ 107 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN-L---G--AYIIDSDH 107 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH-H---T--CEEEEHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-C---C--CcEEehhH
Confidence 45799999999999999999994 2 3 45778763
No 195
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.32 E-value=0.0042 Score=62.05 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDl 73 (376)
+..+++.|+.|+|||||++.+++++... +.++.++++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 4679999999999999999999999876 556666544
No 196
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.31 E-value=0.0044 Score=59.01 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=35.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
++..++|+|++|+|||||+..++..+..++.+|+|+.+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 577999999999999999999998888778888888876
No 197
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.30 E-value=0.0048 Score=58.08 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=37.3
Q ss_pred CCccCChhHHHHH-HHhhcc----CCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 13 PAIYIPREWSDAA-DSIAYD----SNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 13 ~~~~ip~~W~~~~-~~i~~~----~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
..+++|+.+.+.+ ..+..+ .....+..+++.||+|+|||++++.+++.+ +..++.++
T Consensus 7 ~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~ 68 (293)
T 3t15_A 7 DGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMS 68 (293)
T ss_dssp TTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEE
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 4566777665543 233322 112234578888999999999999999988 44555444
No 198
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.29 E-value=0.0028 Score=66.18 Aligned_cols=39 Identities=28% Similarity=0.243 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+..|+++|..||||||+++.|..++.+.|..++.+|.|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 366899999999999999999999998888888888755
No 199
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.28 E-value=0.004 Score=60.91 Aligned_cols=38 Identities=16% Similarity=0.113 Sum_probs=33.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+.++|+|+.|+||||+++.|+..+...+.++.++|-+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46799999999999999999999998888899888654
No 200
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0036 Score=60.03 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR 64 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~ 64 (376)
.++.++|.|++|+|||++++.+++.+-+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 47899999999999999999999998653
No 201
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.23 E-value=0.0031 Score=60.26 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc------CCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR------YKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~------~~~v~~lDlD~ 75 (376)
.+..++|+|+.|+||||||..++..+... +.+|+|+|++-
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 46799999999999999999999876544 67899998874
No 202
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.23 E-value=0.0058 Score=55.81 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+.-++++|++|+||||++|.+++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4569999999999999999999975
No 203
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.22 E-value=0.0024 Score=55.09 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=19.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHL 57 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L 57 (376)
+|..+.++|++|||||||+|.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3678999999999999999983
No 204
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.22 E-value=0.0048 Score=56.02 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
.+..|.|.|+.||||||+++.|++++-. +..+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 4778999999999999999999999865 555544
No 205
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.22 E-value=0.0024 Score=59.81 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=26.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
..|+|+|+.||||||+++.|+..+ ....++|.|
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D 35 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINRD 35 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC----CCcEEeccc
Confidence 479999999999999999998853 245677766
No 206
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.21 E-value=0.003 Score=56.01 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|||||||+|.|+..+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 36789999999999999999999865
No 207
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.20 E-value=0.0029 Score=58.01 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+..|.|.|+.||||||+++.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 208
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.20 E-value=0.0028 Score=59.27 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=22.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
.+++|+|+.|+|||||.+.|++...-....+.+-+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g 37 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNRE 37 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC----------
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCC
Confidence 46899999999999999999998754444454433
No 209
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.17 E-value=0.0064 Score=55.23 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+..+++.|++|+||||+++.+++.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999999976
No 210
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.15 E-value=0.0031 Score=54.19 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.++|+.|+|||||+|.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999999999999876
No 211
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.14 E-value=0.0047 Score=59.34 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc--CCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR--YKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~--~~~v~~lDlD 74 (376)
.+ +++|.|+.|+||||||..++..+.+. +.+|+|+|..
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 35 89999999999999999998888876 7899999973
No 212
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.13 E-value=0.0038 Score=60.29 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=33.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH------cCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ------RYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~------~~~~v~~lDlD~ 75 (376)
.+..++|+|+.|+||||||..++..... .+.+|+|+|++-
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4678999999999999999999887543 467899999864
No 213
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.12 E-value=0.004 Score=55.07 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=24.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRY 65 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~ 65 (376)
.++.|+|+.|+|||||++.|+..+-..|
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHHhhcccCC
Confidence 4689999999999999999999887444
No 214
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.11 E-value=0.0031 Score=56.75 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|||||||++.|+...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999999854
No 215
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.11 E-value=0.0031 Score=64.99 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=32.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcC-CcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRY-KKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~-~~v~~lDlD 74 (376)
++..|.++|+.||||||++|.|+..+-..+ ..+.++|.|
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 467899999999999999999999876444 467788887
No 216
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.11 E-value=0.0054 Score=57.06 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
+..+++.|++|+||||++|.+++.+ +.....+++
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~ 83 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 4679999999999999999999987 334444443
No 217
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.08 E-value=0.0041 Score=56.27 Aligned_cols=27 Identities=11% Similarity=0.306 Sum_probs=23.5
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 35 SPPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 35 ~~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+|..+.|+||.|||||||++.|+...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 357899999999999999999998864
No 218
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.07 E-value=0.0079 Score=53.32 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=34.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
.+...+++|+.|+||||.+..+++++...+.+|+++-
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4679999999999999999999999999999999985
No 219
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.05 E-value=0.0033 Score=60.02 Aligned_cols=40 Identities=28% Similarity=0.472 Sum_probs=34.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
-+.++|+|+.|||||||.+.|+... .+.+++++.-|-|.=
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~G~i 43 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEFGEV 43 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSCCSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecCccc
Confidence 4689999999999999999998753 678999999887753
No 220
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.01 E-value=0.0039 Score=60.39 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH---c---CCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ---R---YKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~---~---~~~v~~lDlD~ 75 (376)
.+..+.|+|+.|||||||++.|+..+.. . +.+|+|+|...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4779999999999999999999987532 2 35788998753
No 221
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.00 E-value=0.007 Score=54.48 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=31.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l 71 (376)
+..|.|.|+.||||||.++.|++++-..|..|...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 67899999999999999999999998888877654
No 222
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.98 E-value=0.0031 Score=56.02 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|.|+|+.||||||+++.|+..+ ...++|.|
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~-----g~~~~~~d 35 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL-----SMIYVDTG 35 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT-----TCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc-----CCceecCC
Confidence 4579999999999999999998865 35677876
No 223
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.97 E-value=0.0049 Score=58.74 Aligned_cols=26 Identities=23% Similarity=0.361 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.++.|+|+.|||||||++.|+..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 57899999999999999999999987
No 224
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.95 E-value=0.0055 Score=62.63 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=32.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+..|+++|..||||||+++.|+.++--.+..+.+++.|
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D 72 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVG 72 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence 45799999999999999999999986667777777776
No 225
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.95 E-value=0.0077 Score=53.44 Aligned_cols=33 Identities=30% Similarity=0.249 Sum_probs=29.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 40 AFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
|.|-|.-||||||.++.|.++|-.+|.+|.+..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 677899999999999999999999998887653
No 226
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.94 E-value=0.0013 Score=55.12 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=31.9
Q ss_pred cCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 16 ~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.-.+.|.++.+.+..-.. .+..|++.|++|+|||+++|.+.+..
T Consensus 8 G~s~~~~~l~~~~~~~~~--~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 8 GNSAAIQEMNREVEAAAK--RTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CCCHHHHHHHHHHHHHHT--CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred eCCHHHHHHHHHHHHHhC--CCCcEEEECCCCccHHHHHHHHHHhC
Confidence 345677777776643111 13459999999999999999988764
No 227
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.93 E-value=0.0049 Score=58.43 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=39.9
Q ss_pred CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
-.+.+.++.+.+..-.. ....|+|.|++|+|||+++|.+.+..-+.+.....+||.
T Consensus 7 ~s~~~~~~~~~~~~~a~--~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~ 62 (304)
T 1ojl_A 7 SSPAMQHLLNEIAMVAP--SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCA 62 (304)
T ss_dssp CSHHHHHHHHHHHHHCS--TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECS
T ss_pred CCHHHHHHHHHHHHHhC--CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCC
Confidence 34567777776643221 245699999999999999999999765555555666663
No 228
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.93 E-value=0.0053 Score=54.82 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
.+..|.|+||.|+|||||++.|+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3678999999999999999998865
No 229
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.93 E-value=0.0044 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
++|+|+|..|+|||||.+.|++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999998888753
No 230
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.91 E-value=0.004 Score=56.89 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|||||||.|.|+..+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 47799999999999999999988654
No 231
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.88 E-value=0.0032 Score=56.74 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=17.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH-HHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLV-NVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~-N~l 61 (376)
++..+.|+|+.||||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 36789999999999999999998 753
No 232
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.88 E-value=0.0099 Score=59.49 Aligned_cols=40 Identities=15% Similarity=0.323 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~ 75 (376)
++..++|.|++|+|||||+..++..+.. .|.+|+|+++..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~ 242 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM 242 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4779999999999999999999998876 577899998763
No 233
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.86 E-value=0.0042 Score=56.13 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l 71 (376)
+|..|.|.|+.||||||+++.|+.. +..+.+.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~ 50 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLL 50 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc----cCCeEEE
Confidence 4678999999999999999999886 4455554
No 234
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.85 E-value=0.011 Score=57.25 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=43.2
Q ss_pred CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
+|-.|..+ +.+.. + -.++-.++|.|++|+|||||+..++..+...+.+|+|+.+...
T Consensus 29 i~TG~~~L-D~~~g-G-l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms 85 (338)
T 4a1f_A 29 IPTGFVQL-DNYTS-G-FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS 85 (338)
T ss_dssp BCCSCHHH-HHHHC-S-BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred ccCCChHH-HHHhc-C-CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 44445433 44432 2 2357799999999999999999999999888999999988643
No 235
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.84 E-value=0.012 Score=50.42 Aligned_cols=26 Identities=19% Similarity=0.080 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLL 62 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll 62 (376)
..+|+|+|..|+|||||.++|.+...
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 46899999999999999987776543
No 236
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.82 E-value=0.0078 Score=55.60 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+..+++.|++|+||||+++.+++.+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 35679999999999999999999875
No 237
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.81 E-value=0.0034 Score=60.09 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQR 64 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~ 64 (376)
.+++.|+.|+||||+++.+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 39999999999999999999998643
No 238
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.80 E-value=0.005 Score=56.00 Aligned_cols=41 Identities=24% Similarity=0.174 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~-~~~~v~~lDlD~G 76 (376)
.+..|.|.|..||||||+++.|.+++-. .|.+|.++--.||
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 4778999999999999999999999988 8877766433444
No 239
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.80 E-value=0.0061 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|+++||+||||+|.|+.|+.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 240
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.79 E-value=0.0088 Score=54.51 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=28.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc----CCcEEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR----YKKVAYL 71 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~----~~~v~~l 71 (376)
.+..|.|.|+.||||||.++.|++++-.. |..|.++
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 47789999999999999999999999877 7777654
No 241
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=95.78 E-value=0.018 Score=59.51 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=40.8
Q ss_pred hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
+...+.++.+.... ...+++.|..|+||||++..|+-.+.+.|.+|.++|+||..
T Consensus 313 ~~l~~~~~~~~~~~----~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~~ 367 (589)
T 1ihu_A 313 PSLSALVDDIARNE----HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA 367 (589)
T ss_dssp CCHHHHHHHHHTTS----CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred chhhhhhhhhhccC----CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCcc
Confidence 45556666553211 23455566669999999999999999999999999999863
No 242
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.78 E-value=0.012 Score=51.59 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQ 63 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~ 63 (376)
+..++|.|+.|+||||+++.+++.+..
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 457999999999999999999998753
No 243
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.77 E-value=0.0065 Score=60.08 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH------cCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ------RYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~------~~~~v~~lDlD 74 (376)
.+..+.|+|+.|+|||||++.|+-..+. .+.+++|+|..
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 4779999999999999999988644432 24678898875
No 244
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.77 E-value=0.012 Score=54.00 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc-EEEE
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKK-VAYL 71 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~-v~~l 71 (376)
+..|.|.|+.||||||+++.|+.++-..|.. +.++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 6789999999999999999999999888777 5544
No 245
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.76 E-value=0.0047 Score=55.95 Aligned_cols=26 Identities=27% Similarity=0.172 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|||||||.|.|+..+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999988754
No 246
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.75 E-value=0.006 Score=50.85 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||++.|++
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 46899999999999999998875
No 247
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.75 E-value=0.01 Score=60.43 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=36.0
Q ss_pred HHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHH-HHHHHHcCCcEEEEcCC
Q 017141 24 AADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHL-VNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 24 ~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L-~N~ll~~~~~v~~lDlD 74 (376)
+++.+...+ -.++..++|+|++|||||||++.+ ++-+++.+....+++..
T Consensus 27 ~Ld~i~~G~-i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 27 GFDDISHGG-LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp THHHHTTSS-EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred hHHHhcCCC-CCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 455554311 124789999999999999999997 47777656667777754
No 248
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.73 E-value=0.0053 Score=56.16 Aligned_cols=26 Identities=19% Similarity=0.470 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|||||||.|.|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999999998754
No 249
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.73 E-value=0.007 Score=57.71 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQ 63 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~ 63 (376)
+.++++|+.|+||||+++.|++.+..
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~ 62 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFG 62 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34999999999999999999998754
No 250
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.72 E-value=0.0097 Score=55.36 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+++.|++|+||||++|.+++.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999875
No 251
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.70 E-value=0.0075 Score=53.79 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHH-----HcC-CcEEEEcCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLL-----QRY-KKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll-----~~~-~~v~~lDlD 74 (376)
...++|+|++|||||++|..++..+. +.| +.+++.++|
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~ 48 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK 48 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence 45899999999999999988765553 566 777788776
No 252
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.70 E-value=0.0055 Score=57.13 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQR 64 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~ 64 (376)
+.+++.|+.|+||||+++.+++.+...
T Consensus 39 ~~~ll~G~~G~GKt~la~~l~~~l~~~ 65 (319)
T 2chq_A 39 PHLLFSGPPGTGKTATAIALARDLFGE 65 (319)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECcCCcCHHHHHHHHHHHhcCC
Confidence 349999999999999999999998643
No 253
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.68 E-value=0.012 Score=58.84 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=36.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
++-.++|.|++|+|||||+..++..++..|.+|+|+.+.-.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms 236 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG 236 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 46799999999999999999999999888889999988744
No 254
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.68 E-value=0.014 Score=52.59 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=29.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCC-cEEE
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYK-KVAY 70 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~-~v~~ 70 (376)
|.-|.+.|+.||||||.++.|..++-..|. .|.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~ 37 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF 37 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCccee
Confidence 568999999999999999999999988776 5544
No 255
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.66 E-value=0.0078 Score=56.20 Aligned_cols=43 Identities=26% Similarity=0.236 Sum_probs=30.8
Q ss_pred ChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141 18 PREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQR 64 (376)
Q Consensus 18 p~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~ 64 (376)
.+.+..+.+.+..+. .+.+++.|+.|+||||+++.+++.+...
T Consensus 27 ~~~~~~l~~~l~~~~----~~~~ll~G~~G~GKt~la~~l~~~l~~~ 69 (323)
T 1sxj_B 27 KETIDRLQQIAKDGN----MPHMIISGMPGIGKTTSVHCLAHELLGR 69 (323)
T ss_dssp THHHHHHHHHHHSCC----CCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHcCC----CCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 344555555554321 2349999999999999999999998643
No 256
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.65 E-value=0.0033 Score=58.64 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l 71 (376)
+|..+.|+|+.|||||||.|.|+..+--...++.+-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 71 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLL 71 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEET
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence 477999999999999999999988653333455553
No 257
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.64 E-value=0.0089 Score=56.28 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+..|+++|++|+||||++|.+++.+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35679999999999999999999975
No 258
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.62 E-value=0.0067 Score=52.77 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
.+|.|+|+.|||||||.+.|++.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 58999999999999999998864
No 259
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.61 E-value=0.0072 Score=50.27 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+|+|+|..|+|||||.+.|++
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999888875
No 260
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.60 E-value=0.0075 Score=49.96 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+|+|+|+.|+|||||.+.|++
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999877765
No 261
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.60 E-value=0.012 Score=55.04 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHc
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQR 64 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~ 64 (376)
.+.+++.|+.|+||||+++.+++.+...
T Consensus 46 ~~~~ll~G~~G~GKT~la~~l~~~l~~~ 73 (327)
T 1iqp_A 46 MPHLLFAGPPGVGKTTAALALARELFGE 73 (327)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 3459999999999999999999997644
No 262
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.59 E-value=0.0054 Score=55.33 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|||||||.|.|+..+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 36789999999999999999998754
No 263
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.58 E-value=0.0076 Score=50.28 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 358999999999999999888653
No 264
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.57 E-value=0.0064 Score=55.23 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|||||||.|.|+..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47799999999999999999998754
No 265
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.56 E-value=0.0079 Score=56.01 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
+|..+.|+|+.|||||||.|.|+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4779999999999999999999885
No 266
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.56 E-value=0.013 Score=59.84 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=32.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
++..++|.|+.|+|||||++.++..+...|.++.|+..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 47799999999999999999999988777777766654
No 267
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.55 E-value=0.0065 Score=56.99 Aligned_cols=35 Identities=17% Similarity=0.348 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||.|.|+..+--...++.+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~ 67 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEE
Confidence 47799999999999999999998754322234444
No 268
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.55 E-value=0.0079 Score=49.88 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999887774
No 269
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.55 E-value=0.0079 Score=50.09 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
.+|+|+|+.|+|||||.+.|++.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999998887653
No 270
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.54 E-value=0.0063 Score=55.78 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||.|.|+...--...++.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 47799999999999999999998764333345555
No 271
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.52 E-value=0.007 Score=56.20 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|||||||.|.|+..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999999988754
No 272
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.52 E-value=0.0079 Score=55.37 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
+|..+.|+|+.|||||||.|.|+..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999999885
No 273
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.52 E-value=0.0083 Score=50.65 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..++|+|+|..|+|||||.+.|++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 468999999999999999988865
No 274
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.51 E-value=0.018 Score=55.65 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=31.0
Q ss_pred CCEEEE--EcCCCCcHHHHHHHHHHHHHHc------CCcEEEEcCC
Q 017141 37 PPIAFI--CGAKNCGKTTFSRHLVNVLLQR------YKKVAYLDTD 74 (376)
Q Consensus 37 ~~~vlV--~G~~~sGKSTl~r~L~N~ll~~------~~~v~~lDlD 74 (376)
+..++| .|+.|+||||+++.+++.+... +..++++++.
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF 95 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC
Confidence 457888 8999999999999999987653 4567778764
No 275
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.51 E-value=0.0071 Score=56.04 Aligned_cols=35 Identities=23% Similarity=0.187 Sum_probs=26.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||.|.|+..+--...++.+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 74 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 47799999999999999999998754222234444
No 276
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.51 E-value=0.0071 Score=56.29 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|||||||.|.|+..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 47799999999999999999988754
No 277
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.51 E-value=0.0084 Score=50.11 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 468999999999999999877753
No 278
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.51 E-value=0.0067 Score=56.10 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||.|.|+..+--....+.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 66 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 47799999999999999999998764322234444
No 279
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.50 E-value=0.0073 Score=54.17 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=31.7
Q ss_pred ChhHH--HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcE
Q 017141 18 PREWS--DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKV 68 (376)
Q Consensus 18 p~~W~--~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v 68 (376)
|+.+. .+++.+. ++.++.|+|+.|||||||.|.|+.. --....+
T Consensus 7 pk~~g~~~~l~~i~------~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 7 PKTLGQKHYVDAID------TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp CCSHHHHHHHHHHH------HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred cCCHhHHHHHHhcc------CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 44443 3566664 2568999999999999999999987 4333334
No 280
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.50 E-value=0.008 Score=52.40 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
.+|.|+|+.|+|||||.+.|++.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 58999999999999999998864
No 281
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.50 E-value=0.0068 Score=55.77 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||.|.|+..+--...++.+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i 68 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI 68 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 46799999999999999999988764322334444
No 282
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.49 E-value=0.0069 Score=55.41 Aligned_cols=35 Identities=23% Similarity=0.330 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||.|.|+..+--...++.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 46799999999999999999998754222234444
No 283
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.49 E-value=0.0082 Score=49.59 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+|+|+|..|+|||||.+.|++
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999888775
No 284
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.49 E-value=0.017 Score=57.59 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=34.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHH-cCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQ-RYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~-~~~~v~~lDlD 74 (376)
++..++|+|++|+|||||+..++..+.. .+.+|+|+++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 5779999999999999999999988876 47889999886
No 285
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.48 E-value=0.0081 Score=50.11 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+|+|+|+.|+|||||.+.|++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999988875
No 286
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.48 E-value=0.013 Score=55.84 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.-||+.|++|+|||++++.+++.+
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 45689999999999999999999986
No 287
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.46 E-value=0.012 Score=54.20 Aligned_cols=26 Identities=19% Similarity=0.347 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+..++++|++|+||||+++.+++.+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 45689999999999999999999974
No 288
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.46 E-value=0.0075 Score=55.94 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|||||||.|.|+..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 47799999999999999999998754
No 289
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.46 E-value=0.011 Score=57.17 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
...++++|++|+||||++|.+++.+ +.....+|+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~ 105 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDA 105 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecc
Confidence 4579999999999999999999986 444455544
No 290
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.46 E-value=0.011 Score=59.43 Aligned_cols=64 Identities=14% Similarity=0.086 Sum_probs=28.9
Q ss_pred CCCCCCccCChhHHHHHHHhh-----ccC--CCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 9 ENPSPAIYIPREWSDAADSIA-----YDS--NTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 9 ~~~~~~~~ip~~W~~~~~~i~-----~~~--~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
++......++..|....+... .+. ....+..|+++|..||||||+++.|+.++-..+.....++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 4 PRELTQNPLKKIFMPYSNGRPALHASQRGVCMTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp ----------------------------------CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccccccCcccceeccccccccccccccccccCCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 455566677788877644321 000 1123458999999999999999999999865554444433
No 291
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.45 E-value=0.0065 Score=50.73 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999988765
No 292
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.44 E-value=0.0086 Score=50.50 Aligned_cols=24 Identities=13% Similarity=0.339 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999888764
No 293
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.011 Score=50.86 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
...+|+|+|+.|+|||||...|++.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4679999999999999999887763
No 294
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.43 E-value=0.0096 Score=51.03 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 578999999999999998888763
No 295
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.43 E-value=0.021 Score=52.90 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=19.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||...|.+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~ 30 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFL 30 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999887653
No 296
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.43 E-value=0.0093 Score=57.06 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
...++++||+|+|||||+|.+++.+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3569999999999999999999986
No 297
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.42 E-value=0.009 Score=54.42 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.-++++|++|+||||++|.+++.+
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 349999999999999999999874
No 298
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.42 E-value=0.0092 Score=50.23 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999988876
No 299
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.41 E-value=0.0099 Score=49.72 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
...+|+|+|..|+|||||.+.|++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999888765
No 300
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.41 E-value=0.0094 Score=50.32 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|+.|+|||||.+.|++.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 568999999999999999887753
No 301
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.40 E-value=0.0095 Score=49.60 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999988775
No 302
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.40 E-value=0.008 Score=55.90 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=26.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||.|.|+..+--...++.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~ 66 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY 66 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 47799999999999999999988754222234444
No 303
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.40 E-value=0.008 Score=56.11 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||.|.|+..+--...+|.+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~ 78 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 47799999999999999999998864322234444
No 304
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.39 E-value=0.0087 Score=56.83 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=31.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHH-H-----------cC----CcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLL-Q-----------RY----KKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll-~-----------~~----~~v~~lDlD~ 75 (376)
.+..++|.|+.|+||||||..++.... . .| .+|+|+|++-
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~ 152 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG 152 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC
Confidence 367899999999999999999987632 2 23 5788887763
No 305
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=95.39 E-value=0.013 Score=57.83 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=32.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
.-++|+|++|||||++.+.++..+++.+..+.++|-
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 468999999999999999999999999999999875
No 306
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.38 E-value=0.008 Score=55.45 Aligned_cols=34 Identities=15% Similarity=0.356 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||.|.|+..+--. .++.+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~ 58 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQF 58 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEE
Confidence 46789999999999999999998765333 34443
No 307
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.37 E-value=0.008 Score=56.43 Aligned_cols=35 Identities=20% Similarity=0.095 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||.|.|+..+--...++.+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 80 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEE
Confidence 46799999999999999999998765322334544
No 308
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.37 E-value=0.0099 Score=50.12 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999888764
No 309
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.34 E-value=0.015 Score=55.20 Aligned_cols=26 Identities=15% Similarity=0.347 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+|+.|++|+|||+++|.+++.+
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35679999999999999999999985
No 310
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.32 E-value=0.01 Score=52.45 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 017141 40 AFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 40 vlV~G~~~sGKSTl~r~L~N~ 60 (376)
|+|+||.||||||+++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999988765
No 311
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.30 E-value=0.01 Score=50.54 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999888775
No 312
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.30 E-value=0.0073 Score=57.30 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQ 63 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~ 63 (376)
+.+++.|++|+||||+++.+++.+..
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~ 84 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYG 84 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34999999999999999999999763
No 313
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.29 E-value=0.011 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
+|+|+|..|+|||||.+.|++.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999988763
No 314
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.29 E-value=0.011 Score=50.34 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999888875
No 315
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.27 E-value=0.015 Score=59.06 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=28.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
.+.++++|++|+||||+++.+++.+ +..+..+++
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~ 110 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNA 110 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeC
Confidence 4689999999999999999999987 566666665
No 316
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.27 E-value=0.012 Score=56.77 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+..|+++|++|+||||+||.+++.+
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 35679999999999999999999987
No 317
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.27 E-value=0.0094 Score=51.27 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..++|+|+|..|+|||||.+.|++.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3689999999999999999888753
No 318
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.26 E-value=0.01 Score=49.86 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+|+|+|..|+|||||.+.|++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999887764
No 319
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.25 E-value=0.0073 Score=58.72 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+..++|+|++|||||||++.|+...
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 5689999999999999999998864
No 320
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.25 E-value=0.0087 Score=51.09 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
++.+|+|+|..|+|||||.+.|++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 367899999999999999988765
No 321
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.24 E-value=0.011 Score=50.07 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999887775
No 322
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.22 E-value=0.0095 Score=55.05 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|||||||.|.|+..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46789999999999999999988754
No 323
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.21 E-value=0.017 Score=51.52 Aligned_cols=32 Identities=22% Similarity=0.246 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l 71 (376)
=|.|-|.-||||||.++.|.++|. ++.+|.+.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 367889999999999999999984 56666543
No 324
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.21 E-value=0.012 Score=50.57 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||++.|++.
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 358999999999999999988763
No 325
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.20 E-value=0.0092 Score=50.13 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 46899999999999999987764
No 326
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.20 E-value=0.015 Score=54.57 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=27.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
+..++|+|++|+||||+++.+++.+ +....++++
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~ 71 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSG 71 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEec
Confidence 4579999999999999999999976 344555554
No 327
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.19 E-value=0.012 Score=50.76 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 46899999999999999887776
No 328
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.19 E-value=0.012 Score=53.92 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=24.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
..+.|+|+.|||||||.|.|+..+--....+.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 57 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL 57 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 689999999999999999998764222234444
No 329
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.17 E-value=0.011 Score=49.95 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 468999999999999999988754
No 330
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.17 E-value=0.017 Score=55.73 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+..||+.|++|+||||++|.+++.+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999875
No 331
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.16 E-value=0.014 Score=51.29 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..++|+|+|+.|+|||||...|++.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3689999999999999999887764
No 332
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.16 E-value=0.0098 Score=55.47 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.-++++||+|+|||||+|.|++.+
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 349999999999999999999863
No 333
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.16 E-value=0.012 Score=50.17 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999888653
No 334
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.15 E-value=0.013 Score=49.61 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 46899999999999999877764
No 335
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.14 E-value=0.012 Score=50.43 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.++|+|+|..|+|||||.+.|++
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHc
Confidence 57999999999999999887754
No 336
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.14 E-value=0.013 Score=49.93 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999888774
No 337
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.14 E-value=0.0072 Score=58.13 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=30.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
+..++|.|++|+|||||+..+++. .+.+|.|+++
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 457899999999999999999886 5678899998
No 338
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.14 E-value=0.009 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|+.|+|||||.+.|++
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999998875
No 339
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.13 E-value=0.024 Score=55.49 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+..++|+|+.|+|||||++.|++..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46799999999999999999999864
No 340
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.13 E-value=0.023 Score=55.31 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLL 62 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll 62 (376)
.+.|+++|+.|+||||+++.|++.+-
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 45699999999999999999999874
No 341
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.12 E-value=0.012 Score=50.41 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999988764
No 342
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.11 E-value=0.016 Score=59.13 Aligned_cols=43 Identities=16% Similarity=0.270 Sum_probs=34.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcC--CcEEEEcCCCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRY--KKVAYLDTDVGQPE 79 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~--~~v~~lDlD~GQ~~ 79 (376)
++.++|.|.+||||||+.+.|+-.++.+. ..+-++-+|++..+
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~e 211 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLE 211 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhh
Confidence 57899999999999999999998887653 35666667777544
No 343
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.11 E-value=0.013 Score=49.49 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 46899999999999999888765
No 344
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.11 E-value=0.013 Score=51.24 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||...|++
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999987765
No 345
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.012 Score=50.69 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 358999999999999999888764
No 346
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.10 E-value=0.013 Score=49.67 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 45899999999999999988765
No 347
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.09 E-value=0.0069 Score=58.20 Aligned_cols=26 Identities=23% Similarity=0.576 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLL 62 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll 62 (376)
+..++|+|++|||||||.+.|+...-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 56899999999999999999998753
No 348
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.08 E-value=0.017 Score=55.74 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+.-||+.|++|+||||++|.+++.+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4569999999999999999999987
No 349
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.08 E-value=0.011 Score=54.78 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+-++++|++|+|||||++.+++.+
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 349999999999999999999875
No 350
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.04 E-value=0.011 Score=57.39 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+.++.|+|+.|||||||++.|+..+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999999874
No 351
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.03 E-value=0.021 Score=53.80 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=30.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
+.++|.|+.|+|||||++.+++.+ ...+.|+++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~~ 66 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRKF 66 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchhh
Confidence 589999999999999999999885 245789988643
No 352
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.03 E-value=0.0091 Score=49.77 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+|+|+|..|+|||||.+.|++
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 5899999999999999987754
No 353
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.02 E-value=0.014 Score=50.13 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+|+|+|..|+|||||.+.|++
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999988765
No 354
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.02 E-value=0.017 Score=48.93 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 57999999999999999977765
No 355
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.00 E-value=0.014 Score=48.78 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+|+|+|..|+|||||.+.|++
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999988764
No 356
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.00 E-value=0.016 Score=57.42 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=27.3
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.|.++++.+.. .+..+.|+|++|+|||||.+.|+...
T Consensus 57 ~i~~~L~~~~~-----~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 57 AISDALKEIDS-----SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp HHHHHHHHHHH-----CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred hhhhhhhhccc-----CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 35555554432 24589999999999999999998743
No 357
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.00 E-value=0.0088 Score=50.45 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999988764
No 358
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.00 E-value=0.016 Score=49.84 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 57999999999999999988876
No 359
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.99 E-value=0.0093 Score=56.81 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.++.|+|+.|||||||.+.|+...
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 47899999999999999999888754
No 360
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.99 E-value=0.013 Score=49.69 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 46899999999999999888774
No 361
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.98 E-value=0.014 Score=51.27 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
...+|+|+|..|+|||||.+.|++
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 357999999999999999987775
No 362
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.98 E-value=0.012 Score=53.24 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+..|.|.|..||||||+++.|+.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999986
No 363
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.97 E-value=0.015 Score=49.93 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999888765
No 364
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.96 E-value=0.011 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+|+|+|..|+|||||.+.|++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999888764
No 365
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.96 E-value=0.014 Score=50.35 Aligned_cols=23 Identities=17% Similarity=0.288 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 35899999999999999888775
No 366
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.96 E-value=0.0096 Score=51.20 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+|+|+|+.|+|||||.+.|++
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999998876
No 367
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.96 E-value=0.015 Score=49.93 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 35899999999999999888775
No 368
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.96 E-value=0.012 Score=55.46 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|..+.|+|+.|||||||.|.|+..+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 47799999999999999999988754
No 369
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.93 E-value=0.015 Score=50.06 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhc
Confidence 35899999999999999988775
No 370
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.93 E-value=0.013 Score=54.62 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=26.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+.++.|+|+.|||||||.|.|+..+ -...++.+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~ 62 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFI 62 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEE
Confidence 6789999999999999999998876 44444544
No 371
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.92 E-value=0.034 Score=59.12 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=32.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
.+|++|++|+|||+++|.+++.+.+.+.....+|+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s 558 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMS 558 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEech
Confidence 699999999999999999999998777778788763
No 372
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.89 E-value=0.012 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+|.++|+.|+|||||.+.|++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999998875
No 373
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.89 E-value=0.016 Score=49.60 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999998887653
No 374
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.88 E-value=0.04 Score=55.01 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=36.9
Q ss_pred cCChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCC-cEEE
Q 017141 16 YIPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYK-KVAY 70 (376)
Q Consensus 16 ~ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~-~v~~ 70 (376)
.+.++=.++++.+...-.. ....++|.|+.||||||+++.+++++...+. .+++
T Consensus 25 ~Ln~~Q~~av~~~~~~i~~-~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~ 79 (459)
T 3upu_A 25 DLTEGQKNAFNIVMKAIKE-KKHHVTINGPAGTGATTLTKFIIEALISTGETGIIL 79 (459)
T ss_dssp CCCHHHHHHHHHHHHHHHS-SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred cCCHHHHHHHHHHHHHHhc-CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence 3444545566554321000 1238999999999999999999999998876 4444
No 375
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.88 E-value=0.017 Score=49.97 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999988876
No 376
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.88 E-value=0.015 Score=50.58 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCcCHHHHHHHHHh
Confidence 56899999999999999988876
No 377
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.86 E-value=0.007 Score=52.96 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
.+.+|.|+|+.|+|||||.+.|++.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4779999999999999999988753
No 378
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.85 E-value=0.019 Score=58.02 Aligned_cols=40 Identities=15% Similarity=0.039 Sum_probs=35.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHc-CCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQR-YKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~-~~~v~~lDlD~ 75 (376)
++..++|.|++|+|||||+..++..+... |.+|+|+++.-
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 46789999999999999999999888876 88999998854
No 379
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.85 E-value=0.015 Score=49.88 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
...+|+|+|..|+|||||.+.|++
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999988874
No 380
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.83 E-value=0.017 Score=49.70 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999988876
No 381
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.82 E-value=0.017 Score=50.08 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 468999999999999999887754
No 382
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.82 E-value=0.023 Score=53.87 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=26.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDl 73 (376)
...|++.|++|+||||+++.+++.+ +.....+++
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~ 88 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEM---SANIKTTAA 88 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecc
Confidence 4579999999999999999998874 344444444
No 383
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.82 E-value=0.024 Score=54.18 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLL 62 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll 62 (376)
+..+++.|++|+||||++|.+++.+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999999974
No 384
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.82 E-value=0.018 Score=49.73 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 46999999999999999987765
No 385
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.029 Score=55.85 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+.-||+.||+|+|||++||.+++.+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999999987
No 386
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.80 E-value=0.018 Score=49.70 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 458999999999999998877753
No 387
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.80 E-value=0.016 Score=58.17 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQ 63 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~ 63 (376)
...++++|++|+||||+++.|++.+.+
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999999864
No 388
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.79 E-value=0.017 Score=49.92 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 46999999999999999877764
No 389
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.75 E-value=0.015 Score=50.46 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999887764
No 390
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.74 E-value=0.018 Score=50.03 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
...+|+|+|..|+|||||.+.|++
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHh
Confidence 357999999999999999888765
No 391
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.74 E-value=0.014 Score=49.33 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999888776
No 392
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.73 E-value=0.019 Score=56.08 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=27.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
+|..+.|+|+.|||||||.|.|+...--...++.+-+-|
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~ 91 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 91 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEE
Confidence 477999999999999999998876542222345543333
No 393
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.73 E-value=0.014 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 57999999999999999887764
No 394
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.72 E-value=0.03 Score=57.35 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+++.++++||+|+||||++|.+++.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999999987
No 395
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.72 E-value=0.019 Score=49.77 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 56999999999999999988876
No 396
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.71 E-value=0.019 Score=49.53 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 469999999999999998887653
No 397
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.70 E-value=0.012 Score=60.04 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
+..++|+|++||||||+.+.|++.+ ....+.+.++
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i-~~~~giitie 294 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFI-PPDAKVVSIE 294 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC-CCCCCEEEEc
Confidence 4569999999999999999998876 4344555554
No 398
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.69 E-value=0.03 Score=54.53 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+..||+.|+.|+|||++++.+++.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998874
No 399
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.67 E-value=0.016 Score=50.32 Aligned_cols=23 Identities=17% Similarity=0.493 Sum_probs=20.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.++|.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 57999999999999999876655
No 400
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.66 E-value=0.018 Score=50.58 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 468999999999999999888763
No 401
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.66 E-value=0.064 Score=55.38 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=37.1
Q ss_pred CChhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEE
Q 017141 17 IPREWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYL 71 (376)
Q Consensus 17 ip~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~l 71 (376)
+.++=.++++.+.. ...++|.|+.|+||||+++.++..+...+.+|.++
T Consensus 190 L~~~Q~~Av~~~~~------~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 190 LSEEQASVLDQLAG------HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CCHHHHHHHHHHTT------CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCHHHHHHHHHHHh------CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 33433445554432 46899999999999999999999998888777764
No 402
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.66 E-value=0.013 Score=49.99 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 569999999999999998887753
No 403
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.66 E-value=0.014 Score=52.50 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
-..|-++|+-||||||++++|.. + ...++|+|.
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~-----g~~vidaD~ 41 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-R-----GASLVDTDL 41 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-T-----TCEEEEHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-C-----CCcEEECcH
Confidence 45789999999999999999876 2 467889986
No 404
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.65 E-value=0.014 Score=52.38 Aligned_cols=35 Identities=20% Similarity=0.162 Sum_probs=27.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
+..|+|+|++|+||||++..|+.+. . -++..|--|
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g----~--~iIsdDs~~ 68 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG----H--RLIADDRVD 68 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT----C--EEEESSEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC----C--eEEecchhh
Confidence 6689999999999999999887653 3 566666443
No 405
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.65 E-value=0.019 Score=55.90 Aligned_cols=35 Identities=37% Similarity=0.566 Sum_probs=26.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+||.|||||||.|.++...--...++.+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 63 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISL 63 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE
Confidence 46789999999999999999998865333334444
No 406
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.64 E-value=0.011 Score=54.26 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+.-+++.|++|+||||+++.+++.+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3458999999999999999999976
No 407
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.61 E-value=0.031 Score=65.21 Aligned_cols=60 Identities=20% Similarity=0.190 Sum_probs=47.0
Q ss_pred CccCChhHHHHHHHhhc-cCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 14 AIYIPREWSDAADSIAY-DSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 14 ~~~ip~~W~~~~~~i~~-~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
.-.+|-.|.+ +|.+.. .. -..+..|+++||.|+||||||..+++.+.+.|++|+|+|.+=
T Consensus 1405 ~~~isTG~~~-LD~lLG~GG-i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1405 VETISTGSLS-LDIALGAGG-LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp CCEECCSCHH-HHHHHSSSS-EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred cccccCCCHH-HHHhcCCCC-ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 4456666666 665543 21 124779999999999999999999999999999999999863
No 408
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=94.61 E-value=0.019 Score=56.22 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=32.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
.+++.|.-|+||||++..|+-.+.+.|++|.++|+ +.
T Consensus 4 i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~ 40 (374)
T 3igf_A 4 ILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AE 40 (374)
T ss_dssp EEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CC
Confidence 45666767999999999999999999999999999 53
No 409
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.59 E-value=0.02 Score=53.88 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=28.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
+.++|.|+.|+|||||++.+++.+ .+.|+|++.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~-----~~~~~~~~~ 64 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNER-----PGILIDCRE 64 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHS-----SEEEEEHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHc-----CcEEEEeec
Confidence 689999999999999999998875 278888753
No 410
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.58 E-value=0.022 Score=49.97 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 579999999999999999888763
No 411
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.58 E-value=0.047 Score=49.24 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=33.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
.+...+++|+-|+||||.+.-++.++...+.+|+++-
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4678889999999999999999999999999999985
No 412
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.58 E-value=0.036 Score=55.33 Aligned_cols=26 Identities=23% Similarity=0.528 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.-||+.||+|+|||++++.+++.+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 46789999999999999999999986
No 413
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.58 E-value=0.011 Score=50.87 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..++|+|+|..|+|||||.+.|++
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999888764
No 414
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.58 E-value=0.044 Score=52.30 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=32.2
Q ss_pred hhHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141 19 REWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ 63 (376)
Q Consensus 19 ~~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~ 63 (376)
+.|..+.+.+..+. .+..+++.|+.|+||||+++.+++.+..
T Consensus 9 ~~~~~l~~~i~~~~---~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 9 PDFEKLVASYQAGR---GHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp HHHHHHHHHHHTTC---CCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC---cceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 35666666665322 3567999999999999999999999863
No 415
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.57 E-value=0.02 Score=50.46 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999888763
No 416
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.57 E-value=0.021 Score=55.55 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
++..+.|+|+.|||||||.|.|+...--...++.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEE
Confidence 46789999999999999999998764322334544
No 417
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.57 E-value=0.02 Score=49.85 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999887765
No 418
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.55 E-value=0.022 Score=55.51 Aligned_cols=35 Identities=14% Similarity=0.246 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
++..+.++|+.|||||||.|.|+...--...++.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 46789999999999999999998764222234444
No 419
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.55 E-value=0.024 Score=53.65 Aligned_cols=35 Identities=11% Similarity=0.039 Sum_probs=28.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
..+++.|++|+|||++++.+++.+ +.....+++.+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~ 81 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTP 81 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCC
Confidence 459999999999999999999976 44566666643
No 420
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.55 E-value=0.021 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
..+++.||+|+||||+|..|++.+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999987
No 421
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.54 E-value=0.016 Score=50.60 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 468999999999999999888754
No 422
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.54 E-value=0.021 Score=55.53 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
++..+.|+|++|||||||.|.|+...--...++.+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 74 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Confidence 46789999999999999999998764322234444
No 423
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.54 E-value=0.041 Score=59.38 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=29.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHH-------cCCcEEEEcC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQ-------RYKKVAYLDT 73 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~-------~~~~v~~lDl 73 (376)
.+.++++|++|+||||+++.|++.+.. .+..++++|+
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 446899999999999999999999866 2455666654
No 424
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.53 E-value=0.022 Score=55.86 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=26.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.++|+.|||||||.|.|+...--...++.+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 62 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEE
Confidence 47789999999999999999998765323334444
No 425
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.52 E-value=0.032 Score=55.67 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..||+.|++|+|||++++.+++.+
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999999975
No 426
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.52 E-value=0.0098 Score=51.56 Aligned_cols=23 Identities=13% Similarity=0.207 Sum_probs=5.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
.+|+|+|..|+|||||.+.|++.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999988765
No 427
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.50 E-value=0.022 Score=49.89 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 45899999999999999887776
No 428
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.49 E-value=0.022 Score=48.99 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
.+|+|+|..|+|||||.+.|++.
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999888764
No 429
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.49 E-value=0.013 Score=49.87 Aligned_cols=25 Identities=16% Similarity=0.084 Sum_probs=10.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
..+|+|+|..|+|||||.+.|++.-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEEEECCCCC-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3689999999999999999887643
No 430
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.47 E-value=0.023 Score=48.15 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLV 58 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~ 58 (376)
...+|+|+|+.|+|||||.+.|+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CccEEEEECCCCCCHHHHHHHHh
Confidence 36799999999999999987665
No 431
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.46 E-value=0.04 Score=54.96 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+.-||+.||+|+|||++|+.+++.+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 46689999999999999999999986
No 432
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.45 E-value=0.024 Score=55.45 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
++..+.|+|+.|||||||.|.|+...--...++.+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 70 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEE
Confidence 46789999999999999999998754222234444
No 433
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.42 E-value=0.019 Score=55.71 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
++..+.++|+.|||||||.|.|+...--...++.+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~ 59 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE
Confidence 46789999999999999999998764222234444
No 434
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.41 E-value=0.069 Score=50.19 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+..+++.|++|+||||+++.+++.+
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 4566777779999999999999886
No 435
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.40 E-value=0.023 Score=49.45 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999987775
No 436
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.38 E-value=0.019 Score=49.77 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 579999999999999999988764
No 437
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.37 E-value=0.024 Score=49.49 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhh
Confidence 46899999999999999988765
No 438
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.37 E-value=0.0083 Score=55.18 Aligned_cols=26 Identities=27% Similarity=0.217 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+..|.|.|..||||||+++.|+.++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999876
No 439
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.37 E-value=0.019 Score=57.26 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.9
Q ss_pred CCCE--EEEEcCCCCcHHHHHHHHHHH
Q 017141 36 PPPI--AFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 36 ~~~~--vlV~G~~~sGKSTl~r~L~N~ 60 (376)
.|.. ++|+|+.|+|||||.+.|++.
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3556 999999999999999999876
No 440
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.36 E-value=0.024 Score=55.42 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|||||||.|.|+...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 46789999999999999999998764
No 441
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.35 E-value=0.043 Score=63.23 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=38.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
++..++|.|++|+||||||..++..+.+.+.+|+|+|++-.-.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~ 424 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD 424 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchH
Confidence 4779999999999999999999999999999999999986543
No 442
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.34 E-value=0.024 Score=53.09 Aligned_cols=24 Identities=21% Similarity=0.477 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..|+|+|+|..|+|||||...|++
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g 46 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVG 46 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHT
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHC
Confidence 468999999999999999877764
No 443
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=94.34 E-value=0.039 Score=54.13 Aligned_cols=30 Identities=27% Similarity=0.217 Sum_probs=25.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRY 65 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~ 65 (376)
...+|.++|..|+|||||+..|++...+.+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g 39 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAEN 39 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSC
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcC
Confidence 356899999999999999999998765554
No 444
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.32 E-value=0.23 Score=46.81 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLV 58 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~ 58 (376)
+...|.|+|..|+|||||...|+
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~ 31 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLL 31 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHh
Confidence 35689999999999999987776
No 445
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.32 E-value=0.015 Score=50.27 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
.+|+|+|..|+|||||.+.|++.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999888653
No 446
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.27 E-value=0.026 Score=55.58 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDV 75 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~ 75 (376)
++..+.|+|+.|||||||.|+|+... ....++.+-+-|+
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~-~~~G~I~i~G~~i 84 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLL-NTEGEIQIDGVSW 84 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCS-EEEEEEEESSCBT
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC-CCCeEEEECCEEC
Confidence 47899999999999999999998754 3434555533343
No 447
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.27 E-value=0.016 Score=49.69 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
...+|+|+|..|+|||||.+.|++
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhc
Confidence 357999999999999999988764
No 448
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.25 E-value=0.013 Score=50.35 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999998887754
No 449
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.21 E-value=0.022 Score=50.07 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=19.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 35899999999999999877764
No 450
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.18 E-value=0.058 Score=51.41 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLL 62 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll 62 (376)
+..+++.|+.|+||||+++.+++.+.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999999873
No 451
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.16 E-value=0.018 Score=49.94 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=20.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
...+|+|+|..|+|||||.+.|++
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 357999999999999999987753
No 452
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.13 E-value=0.021 Score=50.98 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||...|++
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 57999999999999999887765
No 453
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.13 E-value=0.022 Score=50.29 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 468999999999999999888753
No 454
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.12 E-value=0.023 Score=51.14 Aligned_cols=23 Identities=13% Similarity=0.286 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||...|++
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHcC
Confidence 57999999999999999887764
No 455
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.10 E-value=0.053 Score=53.45 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCc
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKK 67 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~ 67 (376)
.|.+++|+|+.|+||||+++.|++.+..++..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~ 204 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD 204 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTT
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCC
Confidence 48899999999999999999999998776544
No 456
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.09 E-value=0.033 Score=53.93 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=29.0
Q ss_pred HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 23 ~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+++.+.. - ..|.++.|+|+.|+|||||.+.|++..
T Consensus 60 ~ald~ll~-i--~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 60 RAIDGLLT-C--GIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp HHHHHHSC-E--ETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEeeee-e--cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56776632 1 247899999999999999999999985
No 457
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.07 E-value=0.031 Score=49.44 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~ 49 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAK 49 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 46999999999999999988776
No 458
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.07 E-value=0.053 Score=62.50 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=37.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
.+..++|+|++|||||+||..++..+++.|.+|+|+++.-.
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~ 73 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 73 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCc
Confidence 46799999999999999999999999999999999999754
No 459
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.07 E-value=0.071 Score=56.55 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=30.2
Q ss_pred hHHHHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHHH
Q 017141 20 EWSDAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVLLQ 63 (376)
Q Consensus 20 ~W~~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~ll~ 63 (376)
++..+++.+.. ..+..++++|++|+||||+++.|++.+..
T Consensus 194 ~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 194 ELERAIQVLCR----RRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp HHHHHHHHHTS----SSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----cCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 44555554432 23567999999999999999999998865
No 460
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.05 E-value=0.028 Score=58.31 Aligned_cols=42 Identities=10% Similarity=0.148 Sum_probs=32.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQP 78 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~ 78 (376)
+..++++|++|+||||++|.+++.+-.......+++.++-..
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~ 101 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE 101 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc
Confidence 457999999999999999999997755444566676665543
No 461
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.04 E-value=0.032 Score=60.22 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=32.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCC
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTD 74 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD 74 (376)
..++++|++|+|||+++|.|++.+.+.+.....+|+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~ 625 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 625 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence 4799999999999999999999998777777777764
No 462
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.04 E-value=0.049 Score=63.59 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=37.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVG 76 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~G 76 (376)
.+..++++|+.|+|||||+..++..+.+.|.+++|++++=.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~ 1120 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1120 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcccc
Confidence 46789999999999999999999999999999999999743
No 463
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.01 E-value=0.02 Score=55.59 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+.|+|+.|||||||.|.|+...
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 46789999999999999999998754
No 464
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.99 E-value=0.037 Score=56.04 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+..||+.|++|+|||+++|.+++.+
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHh
Confidence 5679999999999999999998875
No 465
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.98 E-value=0.033 Score=49.36 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|..|+|||||.+.|++.
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 358999999999999999887763
No 466
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.97 E-value=0.051 Score=53.68 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.-||+.||+|+|||++||.+++.+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 45679999999999999999999986
No 467
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.94 E-value=0.016 Score=51.16 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..++|+|+|..|+|||||...|++
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhC
Confidence 367999999999999999877654
No 468
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.93 E-value=0.021 Score=49.79 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=25.1
Q ss_pred HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHH
Q 017141 23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 23 ~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
.+++.+.- .....+|+++|+.|+|||||.+.|++
T Consensus 14 ~~l~~~~~---~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGL---YKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTC---TTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhc---cCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 45555532 12356899999999999999998864
No 469
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.89 E-value=0.036 Score=48.13 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999887764
No 470
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=93.86 E-value=0.064 Score=54.15 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+.-|+++|++|+||||++|.+++.+
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4569999999999999999999975
No 471
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.86 E-value=0.036 Score=53.92 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
+..+.|+|++|+|||||.+.|+.
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHC
T ss_pred CCEEEEECCCCccHHHHHHHHhc
Confidence 56899999999999999988874
No 472
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.85 E-value=0.047 Score=49.23 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+..|.+.|+.||||||.++.|++++
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999999997
No 473
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.85 E-value=0.022 Score=58.86 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=27.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEE
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAY 70 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~ 70 (376)
+|..+.|+|+.|||||||.+.|+...--...++.+
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 57899999999999999999998765333344444
No 474
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=93.85 E-value=0.036 Score=56.81 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 35 SPPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 35 ~~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+|.++.++|+.|||||||.|.|+..+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357899999999999999999998754
No 475
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.84 E-value=0.046 Score=54.68 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+..|+++|++|+||||++|.|++.+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999986
No 476
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.84 E-value=0.021 Score=55.53 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
++|.|+|..|+|||||.+.|++.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 45999999999999999988864
No 477
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.81 E-value=0.054 Score=54.38 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++.-||+.||+|+|||+++|.+++.+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 56789999999999999999999987
No 478
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.75 E-value=0.037 Score=48.34 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||.+.|++
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999987775
No 479
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.75 E-value=0.043 Score=54.74 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
++..+|+.||+|+|||++++.+++.+
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 35679999999999999999999986
No 480
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.70 E-value=0.034 Score=48.73 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
+.-|+++|++|+||||++..|+.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56799999999999999998876
No 481
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=93.70 E-value=0.069 Score=48.37 Aligned_cols=36 Identities=31% Similarity=0.335 Sum_probs=32.6
Q ss_pred CCEEEEEcC-CCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 37 PPIAFICGA-KNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 37 ~~~vlV~G~-~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
-++++|.|. +|+||||++.-|+..+.++|.+|.+.-
T Consensus 4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 4 MKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp CEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 367999998 799999999999999999999999964
No 482
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.69 E-value=0.041 Score=54.92 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=29.2
Q ss_pred HHHHHhhccCCCCCCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 23 DAADSIAYDSNTSPPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 23 ~~~~~i~~~~~~~~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+++.+. .- .+|.++.|+|+.|+|||||.+.|++..
T Consensus 146 ~vld~vl-~i--~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 146 RAINALL-TV--GRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp HHHHHHS-CC--BTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred eEEeeeE-Ee--cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4777762 22 247899999999999999999999975
No 483
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=93.68 E-value=0.032 Score=51.35 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N 59 (376)
++|+++|..|+|||||...|++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g 23 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTN 23 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 5899999999999999887754
No 484
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.66 E-value=0.031 Score=48.70 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLV 58 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~ 58 (376)
..+|+|+|..|+|||||.+.|+
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999988764
No 485
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.62 E-value=0.042 Score=51.91 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLV 58 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~ 58 (376)
+..+.++|++|+|||||.+.|+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999988
No 486
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=93.61 E-value=0.085 Score=48.37 Aligned_cols=36 Identities=31% Similarity=0.289 Sum_probs=33.3
Q ss_pred CCEEEEEcC-CCCcHHHHHHHHHHHHHHcCCcEEEEc
Q 017141 37 PPIAFICGA-KNCGKTTFSRHLVNVLLQRYKKVAYLD 72 (376)
Q Consensus 37 ~~~vlV~G~-~~sGKSTl~r~L~N~ll~~~~~v~~lD 72 (376)
.++++|.|. +|+|||+++.-|+..|.++|.+|.+.-
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 578999997 799999999999999999999999985
No 487
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.56 E-value=0.1 Score=46.40 Aligned_cols=41 Identities=20% Similarity=0.099 Sum_probs=37.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQ 77 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ 77 (376)
...|+|.+++|.||||.|--++-+++..|.+|+++-.+.|.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~ 68 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT 68 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC
Confidence 45789999999999999999999999999999999887763
No 488
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.54 E-value=0.032 Score=52.68 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
..+|+|+|+.|+|||||.+.|+..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998764
No 489
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.45 E-value=0.031 Score=47.87 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLV 58 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~ 58 (376)
...+|+|+|..|+|||||.+.|+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTC
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 36799999999999999988774
No 490
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.40 E-value=0.024 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 017141 39 IAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 39 ~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
-+++.|++|+|||+++|.+++.+
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHS
T ss_pred eEEEECCCCccHHHHHHHHHHhC
Confidence 39999999999999999999975
No 491
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.39 E-value=0.042 Score=54.95 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+.+++.|++|+||||+++.+++.+
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Confidence 3679999999999999999999986
No 492
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.34 E-value=0.054 Score=46.35 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHHHH
Q 017141 38 PIAFICGAKNCGKTTFSRHLVNV 60 (376)
Q Consensus 38 ~~vlV~G~~~sGKSTl~r~L~N~ 60 (376)
...+|+|+.||||||+.+.|.--
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 38899999999999999987653
No 493
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.33 E-value=0.054 Score=49.89 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||...|++
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 57999999999999999887764
No 494
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.32 E-value=0.041 Score=50.94 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..++|+|+|..|+|||||...|++
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g 48 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHT
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHC
Confidence 467999999999999999877754
No 495
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.29 E-value=0.042 Score=50.03 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|+|+|..|+|||||...|++
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhC
Confidence 56999999999999998877764
No 496
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.29 E-value=0.037 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHHH
Q 017141 37 PPIAFICGAKNCGKTTFSRHLVN 59 (376)
Q Consensus 37 ~~~vlV~G~~~sGKSTl~r~L~N 59 (376)
..+|.++|+.|+|||||...|++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g 25 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTG 25 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999988864
No 497
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=93.26 E-value=0.041 Score=56.74 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
+|.++.|+|+.|||||||.+.|+...
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 57899999999999999999988754
No 498
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=93.22 E-value=0.046 Score=55.99 Aligned_cols=60 Identities=22% Similarity=0.242 Sum_probs=41.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCCCceEEEEecccCCC
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVLLQRYKKVAYLDTDVGQPEFTAPGFLSLTVVDTLTP 96 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~ll~~~~~v~~lDlD~GQ~~~~~PG~vSl~~i~~~~~ 96 (376)
.+|+|+|+|..|+|||||...|.+.-....... -+-.|.+...+..++-..+++++.|+.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~-giT~~i~~~~v~~~~g~~i~~iDTPGh 62 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAG-GITQHIGAFLVSLPSGEKITFLDTPGH 62 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSC-CBCCCTTSCCBCSSCSSCCBCEECSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCC-ceeEEEeEEEEEeCCCCEEEEEECCCh
Confidence 368999999999999999999988765443221 233455555555544446677787763
No 499
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.21 E-value=0.046 Score=58.75 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+..|+++|++|+||||++|.|++.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998864
No 500
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.19 E-value=0.1 Score=51.97 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH
Q 017141 36 PPPIAFICGAKNCGKTTFSRHLVNVL 61 (376)
Q Consensus 36 ~~~~vlV~G~~~sGKSTl~r~L~N~l 61 (376)
.+.-||+.||+|+|||++|+.+++.+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh
Confidence 45679999999999999999999986
Done!