Query 017142
Match_columns 376
No_of_seqs 176 out of 892
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 05:58:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017142.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/017142hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02365 NAM: No apical merist 100.0 1.7E-42 3.7E-47 297.5 4.6 128 3-134 1-129 (129)
2 PF12480 DUF3699: Protein of u 26.1 56 0.0012 26.5 2.3 29 345-373 33-61 (77)
3 PHA00692 hypothetical protein 20.7 38 0.00083 26.7 0.4 9 2-10 36-44 (74)
4 PF07960 CBP4: CBP4; InterPro 13.0 1E+02 0.0022 27.6 1.1 11 10-20 30-40 (128)
5 smart00265 BH4 BH4 Bcl-2 homol 12.2 1.9E+02 0.004 19.4 1.9 20 12-31 4-23 (27)
6 KOG3238 Chloride ion current i 9.9 2.2E+02 0.0047 27.6 2.3 60 3-62 109-168 (216)
7 smart00707 RPEL Repeat in Dros 9.7 1.7E+02 0.0037 19.4 1.1 14 5-18 5-18 (26)
8 PLN02417 dihydrodipicolinate s 9.7 1.6E+02 0.0034 28.7 1.4 18 3-21 103-120 (280)
9 cd00954 NAL N-Acetylneuraminic 9.7 1.5E+02 0.0033 28.8 1.2 19 3-22 103-121 (288)
10 PF13822 ACC_epsilon: Acyl-CoA 9.5 1.5E+02 0.0033 22.9 1.0 9 10-18 10-18 (62)
No 1
>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []. NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.
Probab=100.00 E-value=1.7e-42 Score=297.54 Aligned_cols=128 Identities=38% Similarity=0.656 Sum_probs=96.4
Q ss_pred CCCcceEcCChHHHHHHHHhhhcCCCCCCc-ceEEecCCCCCCCCCCCCCCccCCCCceEEEEeccccccCCCCcccccc
Q 017142 3 SLVGFRFYPTDEQIILLLTMKRRDPAGFSV-RTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFCEPCYKNAESKRVRRRT 81 (376)
Q Consensus 3 LPpGfRF~PTDEELV~~YL~~Ki~G~pl~~-~~I~evDVY~~ePWdLP~~~~~~~~d~eWYFFspr~rKy~nG~R~nR~t 81 (376)
|||||||+|||+|||.+||++|+.|.+++. .+|.++|||++|||+||+.. .+++.+||||+++.+++.++.|.+|++
T Consensus 1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~--~~~~~~~yFF~~~~~~~~~~~r~~R~~ 78 (129)
T PF02365_consen 1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKF--KGGDEEWYFFSPRKKKYPNGGRPNRVT 78 (129)
T ss_dssp --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHS--SS-SSEEEEEEE----------S-EEE
T ss_pred CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhc--cCCCceEEEEEecccccCCcccccccc
Confidence 899999999999999999999999999888 89999999999999999422 234779999999999999999999999
Q ss_pred CCceEEecCCCceEEeCCCceEeEEEEEeecccCCCCCCCCCcCeEEEEEEeC
Q 017142 82 KEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVE 134 (376)
Q Consensus 82 g~GyWKatG~~k~I~~~~~g~vIG~KKtLvFY~gr~~p~g~KT~WvMhEY~L~ 134 (376)
++|+||++|+.++|.+. ++.+||+|++|+||.++. +++.+|+|+||||+|.
T Consensus 79 ~~G~Wk~~g~~~~i~~~-~g~~iG~k~~l~f~~~~~-~~~~kt~W~M~EY~L~ 129 (129)
T PF02365_consen 79 GGGYWKSTGKEKPIKDP-GGKVIGFKKTLVFYSGKS-PNGKKTGWVMHEYSLE 129 (129)
T ss_dssp TTEEEEEECEEEEEEE--TTCEEEEEEEEEEEESST-TS-EEEEEEEEEEEE-
T ss_pred cceEEeecccccccccc-cceeeeeEEEEEEEeccC-CCCCcCCeEEEEEEeC
Confidence 99999999999999996 469999999999998877 8899999999999984
No 2
>PF12480 DUF3699: Protein of unknown function (DUF3699) ; InterPro: IPR022168 This domain family is found in eukaryotes, and is approximately 80 amino acids in length.
Probab=26.09 E-value=56 Score=26.53 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=25.3
Q ss_pred ecCCCceeeecCCCCCCcchhhhhhhhhh
Q 017142 345 SKSDEGVYMEGCSDANTGTESFIEWIDVL 373 (376)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (376)
--++-++|++-|+-|...+.-|-+||..+
T Consensus 33 ~~t~r~~yl~L~~~~~~~~~~F~~w~~lv 61 (77)
T PF12480_consen 33 LVTGRPFYLQLCAPADKPETLFGEWIRLV 61 (77)
T ss_pred EccCCEEEEEEeCcccCcchhHHHHHHHH
Confidence 34577899999999999999999999865
No 3
>PHA00692 hypothetical protein
Probab=20.72 E-value=38 Score=26.72 Aligned_cols=9 Identities=44% Similarity=0.667 Sum_probs=7.1
Q ss_pred CCCCcceEc
Q 017142 2 DSLVGFRFY 10 (376)
Q Consensus 2 ~LPpGfRF~ 10 (376)
+.||||||-
T Consensus 36 eyppgfrfg 44 (74)
T PHA00692 36 EYPPGFRFG 44 (74)
T ss_pred ecCCCcccc
Confidence 468999984
No 4
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=12.98 E-value=1e+02 Score=27.64 Aligned_cols=11 Identities=27% Similarity=0.477 Sum_probs=9.4
Q ss_pred cCChHHHHHHH
Q 017142 10 YPTDEQIILLL 20 (376)
Q Consensus 10 ~PTDEELV~~Y 20 (376)
.||||||+..|
T Consensus 30 tPTeEeL~~r~ 40 (128)
T PF07960_consen 30 TPTEEELFKRY 40 (128)
T ss_pred CCCHHHHHHhc
Confidence 59999999875
No 5
>smart00265 BH4 BH4 Bcl-2 homology region 4.
Probab=12.16 E-value=1.9e+02 Score=19.40 Aligned_cols=20 Identities=5% Similarity=0.297 Sum_probs=16.1
Q ss_pred ChHHHHHHHHhhhcCCCCCC
Q 017142 12 TDEQIILLLTMKRRDPAGFS 31 (376)
Q Consensus 12 TDEELV~~YL~~Ki~G~pl~ 31 (376)
.-.|||.+|+.-|+.-+..+
T Consensus 4 ~nRelV~~yv~yKLsQrgy~ 23 (27)
T smart00265 4 DNRELVVDYVTYKLSQNGYE 23 (27)
T ss_pred chHHHHHHHHHHHHhhcCCC
Confidence 45799999999999866554
No 6
>KOG3238 consensus Chloride ion current inducer protein [Inorganic ion transport and metabolism]
Probab=9.91 E-value=2.2e+02 Score=27.61 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=30.5
Q ss_pred CCCcceEcCChHHHHHHHHhhhcCCCCCCcceEEecCCCCCCCCCCCCCCccCCCCceEE
Q 017142 3 SLVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWY 62 (376)
Q Consensus 3 LPpGfRF~PTDEELV~~YL~~Ki~G~pl~~~~I~evDVY~~ePWdLP~~~~~~~~d~eWY 62 (376)
..-+|||+|.|.--+...-........+-.....+.+-|.-+=|+.-+....+++...||
T Consensus 109 ~i~e~rfvpsDk~~l~a~f~qfcecqel~p~P~ED~~~~dgee~~mea~d~~~gDs~~~~ 168 (216)
T KOG3238|consen 109 PITEFRFVPSDKSALEAMFTQFCECQELNPDPDEDEDDYDGEEYDMEAHDAGQGDSPNSY 168 (216)
T ss_pred ccccceecCCchhHHHHHHHHHHhhhhcCCCccccccccccchhhhhhhhccCCCCcccc
Confidence 345899999998766643333333333222224445555555555544333333334444
No 7
>smart00707 RPEL Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2.
Probab=9.71 E-value=1.7e+02 Score=19.39 Aligned_cols=14 Identities=21% Similarity=0.162 Sum_probs=11.5
Q ss_pred CcceEcCChHHHHH
Q 017142 5 VGFRFYPTDEQIIL 18 (376)
Q Consensus 5 pGfRF~PTDEELV~ 18 (376)
-...++||-||||.
T Consensus 5 ~kl~~RP~~eeLv~ 18 (26)
T smart00707 5 RKLSQRPTREELEE 18 (26)
T ss_pred HHHHcCCCHHHHHH
Confidence 34578999999997
No 8
>PLN02417 dihydrodipicolinate synthase
Probab=9.71 E-value=1.6e+02 Score=28.75 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=14.5
Q ss_pred CCCcceEcCChHHHHHHHH
Q 017142 3 SLVGFRFYPTDEQIILLLT 21 (376)
Q Consensus 3 LPpGfRF~PTDEELV~~YL 21 (376)
+|| +-|.||++||+.||-
T Consensus 103 ~~P-~y~~~~~~~i~~~f~ 120 (280)
T PLN02417 103 INP-YYGKTSQEGLIKHFE 120 (280)
T ss_pred cCC-ccCCCCHHHHHHHHH
Confidence 466 558999999999874
No 9
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=9.66 E-value=1.5e+02 Score=28.84 Aligned_cols=19 Identities=11% Similarity=-0.255 Sum_probs=14.0
Q ss_pred CCCcceEcCChHHHHHHHHh
Q 017142 3 SLVGFRFYPTDEQIILLLTM 22 (376)
Q Consensus 3 LPpGfRF~PTDEELV~~YL~ 22 (376)
+||- .|.||++||+.||..
T Consensus 103 ~~P~-y~~~~~~~i~~~~~~ 121 (288)
T cd00954 103 ITPF-YYKFSFEEIKDYYRE 121 (288)
T ss_pred eCCC-CCCCCHHHHHHHHHH
Confidence 4554 478999999997743
No 10
>PF13822 ACC_epsilon: Acyl-CoA carboxylase epsilon subunit
Probab=9.49 E-value=1.5e+02 Score=22.85 Aligned_cols=9 Identities=44% Similarity=0.722 Sum_probs=7.5
Q ss_pred cCChHHHHH
Q 017142 10 YPTDEQIIL 18 (376)
Q Consensus 10 ~PTDEELV~ 18 (376)
+||||||-.
T Consensus 10 nPt~eElAA 18 (62)
T PF13822_consen 10 NPTDEELAA 18 (62)
T ss_pred CCCHHHHHH
Confidence 799999865
Done!