Query 017142
Match_columns 376
No_of_seqs 176 out of 892
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 09:37:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/017142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/017142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 1.7E-54 5.9E-59 392.5 12.1 148 1-153 13-170 (174)
2 1ut7_A No apical meristem prot 100.0 6.1E-54 2.1E-58 387.8 11.1 149 1-154 15-168 (171)
3 1i17_A Mouse doppel, prion-lik 39.7 12 0.00041 30.8 1.7 21 348-368 37-57 (107)
4 1lg4_A Doppel protein, prion-l 36.9 12 0.0004 31.7 1.3 21 348-368 63-83 (129)
5 1ldd_A APC2WHB, anaphase promo 13.8 65 0.0022 25.0 1.3 28 3-31 36-64 (74)
6 4dox_A Coat protein; all helix 10.1 1.1E+02 0.0038 28.4 1.8 24 3-26 155-178 (226)
7 3dz1_A Dihydrodipicolinate syn 7.9 1.2E+02 0.004 28.8 1.0 18 3-22 109-126 (313)
8 2ehh_A DHDPS, dihydrodipicolin 7.9 1.1E+02 0.0037 28.6 0.8 18 3-21 102-119 (294)
9 1f6k_A N-acetylneuraminate lya 7.9 1.1E+02 0.0037 28.6 0.8 18 3-21 106-123 (293)
10 2ojp_A DHDPS, dihydrodipicolin 7.9 1.1E+02 0.0037 28.5 0.8 18 3-21 103-120 (292)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=1.7e-54 Score=392.48 Aligned_cols=148 Identities=32% Similarity=0.654 Sum_probs=132.7
Q ss_pred CCCCCcceEcCChHHHHHHHHhhhcCCCCCCcceEEecCCCCCCCCCCCCCCccCCCCceEEEEeccccccCCCCccccc
Q 017142 1 MDSLVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFCEPCYKNAESKRVRRR 80 (376)
Q Consensus 1 M~LPpGfRF~PTDEELV~~YL~~Ki~G~pl~~~~I~evDVY~~ePWdLP~~~~~~~~d~eWYFFspr~rKy~nG~R~nR~ 80 (376)
+.|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..+ +.+||||+++++||++|.|++|+
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g--~~ewYFFs~r~~ky~~g~R~nR~ 90 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG--AREWYFFTPRDRKYPNGSRPNRA 90 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC--SSEEEEEEECCC-----CCSCEE
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC--CceEEEEeccccccCCCCCceee
Confidence 4799999999999999999999999999999999999999999999999987654 78999999999999999999999
Q ss_pred cCCceEEecCCCceEEeCCCceEeEEEEEeecccCCCCCCCCCcCeEEEEEEeCCCCC----------CCCCeEEEEEEe
Q 017142 81 TKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVENSPD----------FEKDFVVCRLER 150 (376)
Q Consensus 81 tg~GyWKatG~~k~I~~~~~g~vIG~KKtLvFY~gr~~p~g~KT~WvMhEY~L~~~~~----------~~~e~VLCRIyk 150 (376)
|++||||++|++++|..+ |.+||+||+|+||.|++ |++.||+|+||||+|..... ..++|||||||+
T Consensus 91 t~~G~WkatG~dk~I~~~--g~~vG~KktLvFy~g~~-p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 91 AGNGYWKATGADKPVAPR--GRTLGIKKALVFYAGKA-PRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp ETTEEEEECSCCEEECCS--SSCCEEEEEEEEEESST-TSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred cCCceEccCCCCcEEeeC--CcEEEEEEEEEEecCCC-CCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 999999999999999876 48999999999999999 99999999999999998643 257999999999
Q ss_pred cCc
Q 017142 151 KRE 153 (376)
Q Consensus 151 K~~ 153 (376)
|+.
T Consensus 168 K~~ 170 (174)
T 3ulx_A 168 KKN 170 (174)
T ss_dssp SCC
T ss_pred cCC
Confidence 865
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=6.1e-54 Score=387.76 Aligned_cols=149 Identities=36% Similarity=0.678 Sum_probs=130.0
Q ss_pred CCCCCcceEcCChHHHHHHHHhhhcCCCCCCcceEEecCCCCCCCCCCCCCCccCCCCceEEEEeccccccCCCCccccc
Q 017142 1 MDSLVGFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEIQSEEEVWYFFCEPCYKNAESKRVRRR 80 (376)
Q Consensus 1 M~LPpGfRF~PTDEELV~~YL~~Ki~G~pl~~~~I~evDVY~~ePWdLP~~~~~~~~d~eWYFFspr~rKy~nG~R~nR~ 80 (376)
+.|||||||+|||||||.|||++|+.|.+++..+|+++|||++|||+||+.+..+ +.+||||+++++||++|.|++|+
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g--~~ewyFFs~r~~k~~~g~R~~R~ 92 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG--EKEWYFFSPRDRKYPNGSRPNRV 92 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSC--SSEEEEEEECCC-------CCEE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcC--CccEEEEeccccccCCCCccccc
Confidence 4799999999999999999999999999999999999999999999999987543 78999999999999999999999
Q ss_pred cCCceEEecCCCceEEeCCCceEeEEEEEeecccCCCCCCCCCcCeEEEEEEeCCCCC-----CCCCeEEEEEEecCcc
Q 017142 81 TKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVENSPD-----FEKDFVVCRLERKREK 154 (376)
Q Consensus 81 tg~GyWKatG~~k~I~~~~~g~vIG~KKtLvFY~gr~~p~g~KT~WvMhEY~L~~~~~-----~~~e~VLCRIykK~~k 154 (376)
|++||||++|+++.|...+ .+||+||+|+||.+++ |++.||+|+||||+|..... ..++|||||||+|+..
T Consensus 93 t~~G~Wk~tG~~k~I~~~~--~~vG~KktLvFy~g~~-p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 93 AGSGYWKATGTDKIISTEG--QRVGIKKALVFYIGKA-PKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp ETTEEEEEEEEEEEEEETT--EEEEEEEEEEEEESST-TSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred CCCCEEeccCCCceEEecC--cEEEEEEEEEEEcCcC-CCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 9999999999999999875 9999999999999999 99999999999999998642 2689999999999764
No 3
>1i17_A Mouse doppel, prion-like protein; DPL, unknown function; NMR {Mus musculus} SCOP: d.6.1.1
Probab=39.74 E-value=12 Score=30.79 Aligned_cols=21 Identities=43% Similarity=0.925 Sum_probs=18.2
Q ss_pred CCceeeecCCCCCCcchhhhh
Q 017142 348 DEGVYMEGCSDANTGTESFIE 368 (376)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~ 368 (376)
..|++-.|||+||.-.|-|+.
T Consensus 37 PDgIhY~gCseaNVTke~fvt 57 (107)
T 1i17_A 37 PDGIYYEGCSEANVTKEMLVT 57 (107)
T ss_dssp CSEEECCCCSSTTSCHHHHHH
T ss_pred CCcccccccccccchHHHHHH
Confidence 468999999999999998873
No 4
>1lg4_A Doppel protein, prion-like protein; scrapie, prion protein; NMR {Homo sapiens} SCOP: d.6.1.1
Probab=36.95 E-value=12 Score=31.74 Aligned_cols=21 Identities=38% Similarity=0.843 Sum_probs=18.1
Q ss_pred CCceeeecCCCCCCcchhhhh
Q 017142 348 DEGVYMEGCSDANTGTESFIE 368 (376)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~ 368 (376)
..|++-.|||+||.-.|-|+.
T Consensus 63 PDgIhY~gCseaNVTke~fvt 83 (129)
T 1lg4_A 63 PDGIHYNGCSEANVTKEAFVT 83 (129)
T ss_dssp CSCCCSCSCCCSSCCHHHHHH
T ss_pred CCcccccccccccchHHHHHH
Confidence 468899999999999998873
No 5
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=13.75 E-value=65 Score=24.99 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=23.0
Q ss_pred CCCcceEcC-ChHHHHHHHHhhhcCCCCCC
Q 017142 3 SLVGFRFYP-TDEQIILLLTMKRRDPAGFS 31 (376)
Q Consensus 3 LPpGfRF~P-TDEELV~~YL~~Ki~G~pl~ 31 (376)
.|.|+.|.. |++||-. ||..|+....+.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 477899998 9999888 899999876654
No 6
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=10.10 E-value=1.1e+02 Score=28.44 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=16.7
Q ss_pred CCCcceEcCChHHHHHHHHhhhcC
Q 017142 3 SLVGFRFYPTDEQIILLLTMKRRD 26 (376)
Q Consensus 3 LPpGfRF~PTDEELV~~YL~~Ki~ 26 (376)
-+-|..+.||++|+|.|=..+++.
T Consensus 155 P~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 155 PPSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp CTTCCSSCCCHHHHHHHHTC----
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH
Confidence 344899999999999986665543
No 7
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=7.94 E-value=1.2e+02 Score=28.77 Aligned_cols=18 Identities=28% Similarity=0.152 Sum_probs=13.7
Q ss_pred CCCcceEcCChHHHHHHHHh
Q 017142 3 SLVGFRFYPTDEQIILLLTM 22 (376)
Q Consensus 3 LPpGfRF~PTDEELV~~YL~ 22 (376)
+||- |.||+++|+.||-.
T Consensus 109 ~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp CCCT--TCCSHHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHHH
Confidence 5674 56999999998753
No 8
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=7.92 E-value=1.1e+02 Score=28.59 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=14.0
Q ss_pred CCCcceEcCChHHHHHHHH
Q 017142 3 SLVGFRFYPTDEQIILLLT 21 (376)
Q Consensus 3 LPpGfRF~PTDEELV~~YL 21 (376)
+|| |.|.||+++|+.||-
T Consensus 102 ~~P-~y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 102 VVP-YYNKPTQRGLYEHFK 119 (294)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 455 447899999999884
No 9
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=7.92 E-value=1.1e+02 Score=28.57 Aligned_cols=18 Identities=6% Similarity=-0.251 Sum_probs=13.9
Q ss_pred CCCcceEcCChHHHHHHHH
Q 017142 3 SLVGFRFYPTDEQIILLLT 21 (376)
Q Consensus 3 LPpGfRF~PTDEELV~~YL 21 (376)
+||- -|.||+++|+.||-
T Consensus 106 ~~P~-y~~~~~~~l~~~f~ 123 (293)
T 1f6k_A 106 VTPF-YYKFSFPEIKHYYD 123 (293)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4554 47899999999874
No 10
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=7.88 E-value=1.1e+02 Score=28.54 Aligned_cols=18 Identities=11% Similarity=-0.025 Sum_probs=13.7
Q ss_pred CCCcceEcCChHHHHHHHH
Q 017142 3 SLVGFRFYPTDEQIILLLT 21 (376)
Q Consensus 3 LPpGfRF~PTDEELV~~YL 21 (376)
+||- .|.||+++|+.||-
T Consensus 103 ~~P~-y~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 103 VTPY-YNRPSQEGLYQHFK 120 (292)
T ss_dssp ECCC-SSCCCHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHHH
Confidence 4554 47899999999874
Done!