BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 017143
(376 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EZY|A Chain A, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|B Chain B, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|C Chain C, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|D Chain D, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
Length = 344
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 100/368 (27%), Positives = 178/368 (48%), Gaps = 36/368 (9%)
Query: 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVC-IADPHLQSRQQALKLANAFDWPLKVFP 64
+++ G+IG+G +G H NL + + + + + L+ ++ L + A+ P
Sbjct: 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDP----- 56
Query: 65 GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR 124
EL++ D V+V + TH ++++ K HV EKPL +AD ++++ +
Sbjct: 57 --HELIEDPNVDAVLVCSSTNTHSELVIACAKAKK--HVFCEKPLSLNLADVDRMIEETK 112
Query: 125 KRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQ--VKMVAIREHRFPFLVKVNDWNRFNE 182
K D+++ G R+ KL + V++G+IG+ V + R+ P L D+ R
Sbjct: 113 K-ADVILFTGFNRRFDRNFKKLKEAVENGTIGKPHVLRITSRDPAPPPL----DYIRV-- 165
Query: 183 NTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEF 242
+GG ++ H FD+ R +G V A G+V V+ + GK D+ D A V++ F
Sbjct: 166 -SGGIFLDMTIHDFDMARYIMGEEVEEVFADGSVLVDEE----IGKAGDV-DTAVVVLRF 219
Query: 243 ENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAED 302
++G+ G++D A + Q I V G+ G+ A T E G + L
Sbjct: 220 KSGALGVIDNSRRAVYGYD-QRIEVFGSKGRIFADNVRETTVVLTDEQGDRGSRYLYFFL 278
Query: 303 DRIEYEGLHHGSSYLEHL-NFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFI 361
+R + SYLE L F+ + K + PAV +DG +++ +G AA+ S+E+ R +
Sbjct: 279 ER-------YRDSYLEELKTFIKNV--KSGEPPAVSGEDGKMALLLGYAAKKSLEEKRSV 329
Query: 362 AIEEVMEE 369
+EEV+ E
Sbjct: 330 KLEEVIGE 337
>pdb|1ZH8|A Chain A, Crystal Structure Of Oxidoreductase (tm0312) From
Thermotoga Maritima At 2.50 A Resolution
pdb|1ZH8|B Chain B, Crystal Structure Of Oxidoreductase (tm0312) From
Thermotoga Maritima At 2.50 A Resolution
Length = 340
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/278 (25%), Positives = 126/278 (45%), Gaps = 39/278 (14%)
Query: 7 VKYGIIGMGMMGREHFI----NLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV 62
++ GI+G G+ RE + NL HL + + ++R A + A P V
Sbjct: 19 IRLGIVGCGIAARELHLPALKNLSHL----FEITAVTS---RTRSHAEEFAKXVGNP-AV 70
Query: 63 FPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA 122
F ++ELL+SGL D V ++ P + + + K HV+ EKP+ T V KKVV+
Sbjct: 71 FDSYEELLESGLVDAVDLTLPVELNLPFIEKALR--KGVHVICEKPISTDVETGKKVVEL 128
Query: 123 ARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIG-------QVKMVAIREHRFPFLVKVN 175
+ K + V + +R++P K ++V+SG+IG Q+ + +++
Sbjct: 129 SEKS-EKTVYIAENFRHVPAFWKAKELVESGAIGDPVFXNWQIWVGXDENNKYVH----T 183
Query: 176 DWNRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDN 235
DW + ++ GG L + H RL +G + +++ A D++ + G D
Sbjct: 184 DWRKKPKHVGGFLSDGGVHHAAAXRLILGE--IEWISAVAKDLS---PLLGGX-----DF 233
Query: 236 AYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGK 273
I EFENG+ G + +G+ + + G GK
Sbjct: 234 LSSIFEFENGTVGNYTISYSLKGN---ERFEITGTKGK 268
>pdb|3NT2|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor
pdb|3NT2|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor
pdb|3NT4|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor Nadh And Inositol
pdb|3NT4|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor Nadh And Inositol
pdb|3NT5|A Chain A, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor And Product
Inosose
pdb|3NT5|B Chain B, Crystal Structure Of Myo-Inositol Dehydrogenase From
Bacillus Subtilis With Bound Cofactor And Product
Inosose
Length = 344
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 155/362 (42%), Gaps = 38/362 (10%)
Query: 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
+++ G+IG G +G+EH IN + G +V + D + ++ Q K+ + V+P
Sbjct: 2 SLRIGVIGTGAIGKEH-INRITNKLSGAEIVAVTDVNQEAAQ---KVVEQYQLNATVYPN 57
Query: 66 HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
LL D V+V++ H ++ I K +V EKPL TT C ++V+ K
Sbjct: 58 DDSLLADENVDAVLVTSWGPAHESSVLKAIKAQK--YVFCEKPLATTAEGCMRIVEEEIK 115
Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTG 185
LVQVG RY +L + + + IG+ M+ HR P V D N T
Sbjct: 116 VGKRLVQVGFMRRYDSGYVQLKEALDNHVIGEPLMIHCA-HRNP---TVGD----NYTTD 167
Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG 245
+V+ H D++ V + +V V + + N +P + D V++E + G
Sbjct: 168 MAVVDTLVHEIDVLHWLVNDD------YESVQVIYPKKSKNA-LPHLKDPQIVVIETKGG 220
Query: 246 ---SRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAED 302
+ + C + + E +VG G + P SI + R+ GR L
Sbjct: 221 IVINAEIYVNCKYGYDIQCE----IVGEDGIIKLPEPSSI---SLRKEGRFSTDIL---- 269
Query: 303 DRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIA 362
++++ + +E +F+ +I+ KG +V DG I+ A + E G+
Sbjct: 270 --MDWQRRFVAAYDVEIQDFIDSIQKKG-EVSGPTAWDGYIAAVTTDACVKAQESGQKEK 326
Query: 363 IE 364
+E
Sbjct: 327 VE 328
>pdb|3MZ0|A Chain A, Crystal Structure Of Apo Myo-Inositol Dehydrogenase From
Bacillus Subtilis
Length = 344
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 153/362 (42%), Gaps = 38/362 (10%)
Query: 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
+++ G+IG G +G+EH IN + G +V + D + ++ Q K+ + V+P
Sbjct: 2 SLRIGVIGTGAIGKEH-INRITNKLSGAEIVAVTDVNQEAAQ---KVVEQYQLNATVYPN 57
Query: 66 HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
LL D V+V++ H ++ I K +V EKPL TT C ++V+ K
Sbjct: 58 DDSLLADENVDAVLVTSWGPAHESSVLKAIKAQK--YVFCEKPLATTAEGCXRIVEEEIK 115
Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTG 185
LVQVG RY +L + + + IG+ + HR P V D N T
Sbjct: 116 VGKRLVQVGFXRRYDSGYVQLKEALDNHVIGEPLXIHCA-HRNP---TVGD----NYTTD 167
Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG 245
+V+ H D++ V + +V V + + N +P + D V++E + G
Sbjct: 168 XAVVDTLVHEIDVLHWLVNDD------YESVQVIYPKKSKNA-LPHLKDPQIVVIETKGG 220
Query: 246 ---SRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAED 302
+ + C + + E +VG G + P SI + R+ GR L
Sbjct: 221 IVINAEIYVNCKYGYDIQCE----IVGEDGIIKLPEPSSI---SLRKEGRFSTDILX--- 270
Query: 303 DRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIA 362
+++ + +E +F+ +I+ KG +V DG I+ A + E G+
Sbjct: 271 ---DWQRRFVAAYDVEIQDFIDSIQKKG-EVSGPTAWDGYIAAVTTDACVKAQESGQKEK 326
Query: 363 IE 364
+E
Sbjct: 327 VE 328
>pdb|3NTO|A Chain A, Crystal Structure Of K97v Mutant Myo-Inositol
Dehydrogenase From Bacillus Subtilis
pdb|3NTQ|A Chain A, Crystal Structure Of K97v Mutant Myo-Inositol
Dehydrogenase From Bacillus Subtilis With Bound Cofactor
Nad
pdb|3NTQ|B Chain B, Crystal Structure Of K97v Mutant Myo-Inositol
Dehydrogenase From Bacillus Subtilis With Bound Cofactor
Nad
pdb|3NTR|A Chain A, Crystal Structure Of K97v Mutant Of Myo-Inositol
Dehydrogenase From Bacillus Subtilis With Bound Cofactor
Nad And Inositol
pdb|3NTR|B Chain B, Crystal Structure Of K97v Mutant Of Myo-Inositol
Dehydrogenase From Bacillus Subtilis With Bound Cofactor
Nad And Inositol
Length = 344
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 88/362 (24%), Positives = 154/362 (42%), Gaps = 38/362 (10%)
Query: 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
+++ G+IG G +G+EH IN + G +V + D + ++ Q K+ + V+P
Sbjct: 2 SLRIGVIGTGAIGKEH-INRITNKLSGAEIVAVTDVNQEAAQ---KVVEQYQLNATVYPN 57
Query: 66 HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
LL D V+V++ H ++ I K +V E PL TT C ++V+ K
Sbjct: 58 DDSLLADENVDAVLVTSWGPAHESSVLKAIKAQK--YVFCEVPLATTAEGCMRIVEEEIK 115
Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTG 185
LVQVG RY +L + + + IG+ M+ HR P V D N T
Sbjct: 116 VGKRLVQVGFMRRYDSGYVQLKEALDNHVIGEPLMIHCA-HRNP---TVGD----NYTTD 167
Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG 245
+V+ H D++ V + +V V + + N +P + D V++E + G
Sbjct: 168 MAVVDTLVHEIDVLHWLVNDD------YESVQVIYPKKSKNA-LPHLKDPQIVVIETKGG 220
Query: 246 ---SRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLKAED 302
+ + C + + E +VG G + P SI + R+ GR L
Sbjct: 221 IVINAEIYVNCKYGYDIQCE----IVGEDGIIKLPEPSSI---SLRKEGRFSTDIL---- 269
Query: 303 DRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIEKGRFIA 362
++++ + +E +F+ +I+ KG +V DG I+ A + E G+
Sbjct: 270 --MDWQRRFVAAYDVEIQDFIDSIQKKG-EVSGPTAWDGYIAAVTTDACVKAQESGQKEK 326
Query: 363 IE 364
+E
Sbjct: 327 VE 328
>pdb|3EC7|A Chain A, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|B Chain B, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|C Chain C, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|D Chain D, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|E Chain E, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|F Chain F, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|G Chain G, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
pdb|3EC7|H Chain H, Crystal Structure Of Putative Dehydrogenase From
Salmonella Typhimurium Lt2
Length = 357
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 67/136 (49%), Gaps = 10/136 (7%)
Query: 27 HLRS-----QGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVS 81
HLR GV VV + D Q AL + + K + + +L++ +VV+++
Sbjct: 38 HLRRLANTVSGVEVVAVCDIVAGRAQAAL---DKYAIEAKDYNDYHDLINDKDVEVVIIT 94
Query: 82 TPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGLEYRYMP 141
N H + + +N K +V EKPL T ADC++V++A +K VQ+G RY
Sbjct: 95 ASNEAHADVAVAALNANK--YVFCEKPLAVTAADCQRVIEAEQKNGKRXVQIGFXRRYDK 152
Query: 142 PVAKLIQIVKSGSIGQ 157
+L I+ SG IGQ
Sbjct: 153 GYVQLKNIIDSGEIGQ 168
>pdb|4HAD|A Chain A, Crystal Structure Of Probable Oxidoreductase Protein From
Rhizobium Etli Cfn 42
pdb|4HAD|B Chain B, Crystal Structure Of Probable Oxidoreductase Protein From
Rhizobium Etli Cfn 42
pdb|4HAD|C Chain C, Crystal Structure Of Probable Oxidoreductase Protein From
Rhizobium Etli Cfn 42
pdb|4HAD|D Chain D, Crystal Structure Of Probable Oxidoreductase Protein From
Rhizobium Etli Cfn 42
Length = 350
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 12/229 (5%)
Query: 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
+++GII +GR++ + ++ V IA L +A + A+ F P F +
Sbjct: 24 LRFGIISTAKIGRDNVVPAIQ-DAENCVVTAIASRDLT---RAREXADRFSVP-HAFGSY 78
Query: 67 QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
+E L S + D V + P H + + + K HV+ EKPL D V+ AAR R
Sbjct: 79 EEXLASDVIDAVYIPLPTSQHIEWSIKAADAGK--HVVCEKPLALKAGDIDAVI-AARDR 135
Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVK-VNDWNRFNENTG 185
++V Y P K+ ++ G+IG ++ V + F + + ++ E G
Sbjct: 136 NKVVVTEAYXITYSPVWQKVRSLIDEGAIGSLRHV---QGAFTYFNRDASNXRNIPELGG 192
Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIID 234
G L + + R G P+R+ A+ D + ++Y+ D D
Sbjct: 193 GGLPDIGVYPVXSTRFSTGKEPLRIQANTERDPDFGTDIYSSVKADFDD 241
>pdb|3Q2K|A Chain A, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|B Chain B, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|C Chain C, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|D Chain D, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|E Chain E, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|F Chain F, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|G Chain G, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|H Chain H, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|I Chain I, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|J Chain J, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|K Chain K, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|L Chain L, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|M Chain M, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|N Chain N, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|O Chain O, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
pdb|3Q2K|P Chain P, Crystal Structure Of The Wlba Dehydrogenase From
Bordetella Pertussis In Complex With Nadh And
Udp-Glcnaca
Length = 370
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/364 (21%), Positives = 147/364 (40%), Gaps = 44/364 (12%)
Query: 7 VKYGIIGMGMMGREHF--INLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP 64
+++G++G G + + H I H R++ V + C +P +AL+ A A + F
Sbjct: 31 IRFGLVGCGRISKNHIGAIAQHGDRAELVEI-CDTNP------EALQAAEAAT-GARPFS 82
Query: 65 GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR 124
++L G D +V++TP+ H +++ + HV+ EKP+ T D K++V A
Sbjct: 83 SLSDMLAQGNADALVLATPSGLHPWQAIEVAQAGR--HVVSEKPMATRWEDGKRMVKAC- 139
Query: 125 KRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR--EHRFPFLVKVNDWNRFNE 182
+ + V + R + + + ++ G G++ MV + R W E
Sbjct: 140 DEAGVRLFVVKQNRRNATLQLVKKAIEQGRFGRIYMVTVNVFWTRPQEYYDAARWRGKWE 199
Query: 183 NTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEF 242
GG + + H+ DL+ VG P+ + + + + E D + +
Sbjct: 200 WDGGAFMNQASHYVDLLDWLVG--PVESVYAYTATLARRIEAE--------DTGVAALRW 249
Query: 243 ENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQTLK--- 299
+G+ G +++ M E I ++G G VR R D
Sbjct: 250 RHGAMGSINVTMLTYPQNLEGSITILGEKG---------TVRVGGVAVNRIDEWKFAEPH 300
Query: 300 AEDDRIEYEGLHHGSSY-----LEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLS 354
+DD+I S Y L + N ++ +R G P D ++GL S+A+ A S
Sbjct: 301 PDDDKIREANYETTSVYGFGHPLYYDNVINCLR--GDCEPETDGREGLQSLALLTAIYRS 358
Query: 355 IEKG 358
G
Sbjct: 359 ARDG 362
>pdb|3Q2I|A Chain A, Crystal Structure Of The Wlba Dehydrognase From
Chromobactrium Violaceum In Complex With Nadh And
Udp-Glcnaca At 1.50 A Resolution
Length = 354
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 85/367 (23%), Positives = 147/367 (40%), Gaps = 40/367 (10%)
Query: 7 VKYGIIGMGMMGREHFINL--HHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP 64
+++ ++G G + HF L H R++ + V C DP + + A++ A
Sbjct: 14 IRFALVGCGRIANNHFGALEKHADRAELIDV-CDIDP--AALKAAVERTGA--------R 62
Query: 65 GHQELLD---SGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
GH L D D+V+++TP+ H I HV+ EKP+ T D ++V
Sbjct: 63 GHASLTDMLAQTDADIVILTTPSGLH--PTQSIECSEAGFHVMTEKPMATRWEDGLEMVK 120
Query: 122 AARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIR--EHRFPFLVKVNDWNR 179
AA K L V + R + L + ++ G++ MV + R W
Sbjct: 121 AADKAKKHLFVVK-QNRRNATLQLLKRAMQEKRFGRIYMVNVNVFWTRPQEYYDAAGWRG 179
Query: 180 FNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI 239
E GG + + H+ DL+ +G P+ + + + E + D V
Sbjct: 180 TWEFDGGAFMNQASHYVDLLDWLIG--PVESVQAYTATLARNIE--------VEDTGTVS 229
Query: 240 VEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGK---GEAFVPESIVRFATREAGREDVQ 296
V++ +G+ G +++ M E I ++G G G V E I + E D +
Sbjct: 230 VKWRSGALGSMNVTMLTYPKNLEGSITILGEKGSVRVGGVAVNE-IQHWEFSEPHAMDEE 288
Query: 297 TLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIE 356
A G H L + N + +R G P D ++GL S+ + +A LS
Sbjct: 289 IKDASYATTSVYGFGHP---LYYDNVIKTMR--GEATPETDGREGLKSLELLIAMYLSAR 343
Query: 357 KGRFIAI 363
GR +++
Sbjct: 344 DGRRVSL 350
>pdb|3CEA|A Chain A, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|B Chain B, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|C Chain C, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
pdb|3CEA|D Chain D, Crystal Structure Of Myo-Inositol 2-Dehydrogenase
(Np_786804.1) From Lactobacillus Plantarum At 2.40 A
Resolution
Length = 346
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 84/372 (22%), Positives = 149/372 (40%), Gaps = 49/372 (13%)
Query: 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
++ IIG+G +G H HL ++ V +A L S Q L+ A + +
Sbjct: 9 LRAAIIGLGRLGERH---ARHLVNKIQGVKLVAACALDSNQ--LEWAKNELGVETTYTNY 63
Query: 67 QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
++ +D+ D + + P H + + N +V EKPL + + +
Sbjct: 64 KDXIDTENIDAIFIVAPTPFHPEXTIYAXN--AGLNVFCEKPLGLDFNEVDEXAKVIKSH 121
Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRF--NENT 184
P+ + Q G RY +IV +G IG K++ R + + + +F ++
Sbjct: 122 PNQIFQSGFXRRYDDSYRYAKKIVDNGDIG--KIIYXRGYGIDPISGXESFTKFATEADS 179
Query: 185 GGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFEN 244
GG V+ H DL+R F G +P V A G N P + D I EFE
Sbjct: 180 GGIFVDXNIHDIDLIRWFTGQDP--VQAYGLTS--------NIAAPQLAD----IGEFET 225
Query: 245 G------SRGMLDLCMFAEGSK--NEQEIVVVGNTGK---GEAFVPESIVRFATREAGRE 293
G S G++ + + N+ E+ V G+ G GE + F + R
Sbjct: 226 GVAQLKXSDGVIATLIGGRHAAHGNQVELEVXGSNGWVRIGEHPDLNRVTVFNDQGVVRP 285
Query: 294 DVQTLKAEDDRIEYEGLHHGSSYLEHL-NFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQ 352
+Q+ G +++ + + +F++ + K P V + DG+ ++ I A Q
Sbjct: 286 SLQSF----------GERFDTAFTDEVQDFVNNVIV--GKQPEVTVDDGIKALKIAKACQ 333
Query: 353 LSIEKGRFIAIE 364
S G+ + I+
Sbjct: 334 QSANIGKLVDIQ 345
>pdb|3E1K|A Chain A, Crystal Structure Of Kluyveromyces Lactis Gal80p In
Complex With The Acidic Activation Domain Of Gal4p
pdb|3E1K|C Chain C, Crystal Structure Of Kluyveromyces Lactis Gal80p In
Complex With The Acidic Activation Domain Of Gal4p
pdb|3E1K|E Chain E, Crystal Structure Of Kluyveromyces Lactis Gal80p In
Complex With The Acidic Activation Domain Of Gal4p
pdb|3E1K|G Chain G, Crystal Structure Of Kluyveromyces Lactis Gal80p In
Complex With The Acidic Activation Domain Of Gal4p
pdb|3E1K|I Chain I, Crystal Structure Of Kluyveromyces Lactis Gal80p In
Complex With The Acidic Activation Domain Of Gal4p
pdb|3E1K|K Chain K, Crystal Structure Of Kluyveromyces Lactis Gal80p In
Complex With The Acidic Activation Domain Of Gal4p
pdb|3E1K|M Chain M, Crystal Structure Of Kluyveromyces Lactis Gal80p In
Complex With The Acidic Activation Domain Of Gal4p
pdb|3E1K|O Chain O, Crystal Structure Of Kluyveromyces Lactis Gal80p In
Complex With The Acidic Activation Domain Of Gal4p
Length = 465
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 84/170 (49%), Gaps = 21/170 (12%)
Query: 7 VKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-----LKLANAFD 57
++ G +G+ + + HF+ + L SQ +V + +P L+S Q LK A FD
Sbjct: 18 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQ-FQIVALYNPTLKSSLQTIEQLQLKHATGFD 76
Query: 58 WPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPH----HVLVEKPLCTTV 113
L+ F ++++ D++VVS HY+++ +I+ H + ++ VE L +V
Sbjct: 77 -SLESFAQYKDI------DMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASV 129
Query: 114 ADCKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI 163
+++ +++R ++ + L+ R P + + +++ G IG + + I
Sbjct: 130 QQAEELYSISQQRANLQTIICLQGRKSPYIVRAKELISEGCIGDINSIEI 179
>pdb|2NVW|A Chain A, Crystal Sctucture Of Transcriptional Regulator Gal80p From
Kluyveromymes Lactis
pdb|2NVW|B Chain B, Crystal Sctucture Of Transcriptional Regulator Gal80p From
Kluyveromymes Lactis
Length = 479
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 79/160 (49%), Gaps = 17/160 (10%)
Query: 13 GMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQA-----LKLANAFDWPLKVFPGHQ 67
G + + HF+ + L SQ +V + +P L+S Q LK A FD L+ F ++
Sbjct: 50 GKSWVAKTHFLAIQQLSSQ-FQIVALYNPTLKSSLQTIEQLQLKHATGFD-SLESFAQYK 107
Query: 68 ELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPH----HVLVEKPLCTTVADCKKVVDAA 123
++ D++VVS HY+++ +I+ H + ++ VE L +V +++ +
Sbjct: 108 DI------DMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSIS 161
Query: 124 RKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI 163
++R ++ + L+ R P + + +++ G IG + + I
Sbjct: 162 QQRANLQTIICLQGRKSPYIVRAKELISEGCIGDINSIEI 201
>pdb|3IP3|A Chain A, Structure Of Putative Oxidoreductase (Tm_0425) From
Thermotoga Maritima
pdb|3IP3|B Chain B, Structure Of Putative Oxidoreductase (Tm_0425) From
Thermotoga Maritima
pdb|3IP3|C Chain C, Structure Of Putative Oxidoreductase (Tm_0425) From
Thermotoga Maritima
pdb|3IP3|D Chain D, Structure Of Putative Oxidoreductase (Tm_0425) From
Thermotoga Maritima
pdb|3IP3|E Chain E, Structure Of Putative Oxidoreductase (Tm_0425) From
Thermotoga Maritima
pdb|3IP3|F Chain F, Structure Of Putative Oxidoreductase (Tm_0425) From
Thermotoga Maritima
pdb|3IP3|G Chain G, Structure Of Putative Oxidoreductase (Tm_0425) From
Thermotoga Maritima
pdb|3IP3|H Chain H, Structure Of Putative Oxidoreductase (Tm_0425) From
Thermotoga Maritima
Length = 337
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 134/308 (43%), Gaps = 35/308 (11%)
Query: 61 KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
K + E L+ D++V++T + +IL++ + + H VEKP+ TT D +K+
Sbjct: 54 KKYNNWWEXLEKEKPDILVINTVFSLNGKILLEALE--RKIHAFVEKPIATTFEDLEKIR 111
Query: 121 DAARK-RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNR 179
+K R ++ RY P ++V G++G++++V ++ L + D+ +
Sbjct: 112 SVYQKVRNEVFFTAXFGIRYRPHFLTAKKLVSEGAVGEIRLVNTQKSY--KLGQRPDFYK 169
Query: 180 FNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVI 239
E GGT+ H D + G + V A+ + ++N ++ A
Sbjct: 170 KRETYGGTIPWVGIHAIDWIHWITGKKFLSVYATHS-------RLHNSGHGELETTALCH 222
Query: 240 VEFENGSRGMLDL-CMFAEG--SKNEQEIVVVGNTGKGEAFVPESIVRFATREAGREDVQ 296
EN L + + +G + ++ +VG G E + E + F T E G +V
Sbjct: 223 FTLENEVFASLSIDYLRPQGAPTHDDDRXRIVGTRGIVEV-INERV--FLTDEKGHREVP 279
Query: 297 TLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGVAAQLSIE 356
+ E +I +E +FL IR +G V +D +++ I + A+LS +
Sbjct: 280 LV--EKGQI-FE------------DFLREIRGQGK--CXVTPEDSILTTEIALKARLSAD 322
Query: 357 KGRFIAIE 364
G+ + IE
Sbjct: 323 TGQIVLIE 330
>pdb|1EVJ|A Chain A, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|B Chain B, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|C Chain C, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
pdb|1EVJ|D Chain D, Crystal Structure Of Glucose-Fructose Oxidoreductase
(Gfor) Delta1-22 S64d
Length = 352
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 76 DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL 135
D V + PN H + + K HV+ EKP+ T+VADC++++DAA+ L+ +G
Sbjct: 71 DAVYIILPNSLHAEFAIRAFKAGK--HVMCEKPMATSVADCQRMIDAAKAANKKLM-IGY 127
Query: 136 EYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVND----WN-RFNENTGGTLVE 190
Y P +++++ +G++ MV ++ ND W R GG+L++
Sbjct: 128 RCHYDPMNRAAVKLIRENQLGKLGMVTTDNSD---VMDQNDPAQQWRLRRELAGGGSLMD 184
Query: 191 KCCHFFDLMRLFVGSNPMRVMASGAVDVN 219
+ + R +G P+ V A D N
Sbjct: 185 IGIYGLNGTRYLLGEEPIEVRAYTYSDPN 213
>pdb|1H6D|A Chain A, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|B Chain B, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|C Chain C, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|D Chain D, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|E Chain E, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|F Chain F, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|G Chain G, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|H Chain H, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|I Chain I, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|J Chain J, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|K Chain K, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6D|L Chain L, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6C|A Chain A, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Succinate
pdb|1H6C|B Chain B, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Succinate
pdb|1H6B|A Chain A, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6B|B Chain B, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis Complexed With Glycerol
pdb|1H6A|A Chain A, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis
pdb|1H6A|B Chain B, Reduced Precursor Form Of Glucose-Fructose Oxidoreductase
From Zymomonas Mobilis
Length = 433
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 13/155 (8%)
Query: 76 DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL 135
D V + PN H + + K HV+ EKP+ T+VADC++++DAA+ L+ +G
Sbjct: 152 DAVYIILPNSLHAEFAIRAFKAGK--HVMCEKPMATSVADCQRMIDAAKAANKKLM-IGY 208
Query: 136 EYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVND----WN-RFNENTGGTLVE 190
Y P +++++ +G++ MV ++ ND W R GG+L++
Sbjct: 209 RCHYDPMNRAAVKLIRENQLGKLGMVTTDNSD---VMDQNDPAQQWRLRRELAGGGSLMD 265
Query: 191 KCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMY 225
+ + R +G P+ V A D N DE +
Sbjct: 266 IGIYGLNGTRYLLGEEPIEVRAYTYSDPN--DERF 298
>pdb|3E18|A Chain A, Crystal Structure Of Nad-Binding Protein From Listeria
Innocua
pdb|3E18|B Chain B, Crystal Structure Of Nad-Binding Protein From Listeria
Innocua
Length = 359
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 107/243 (44%), Gaps = 25/243 (10%)
Query: 11 IIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELL 70
I+G G MG H + L + + V + D + R+ A + LK++ ++ +L
Sbjct: 10 IVGYGGMGSYH-VTLAS-AADNLEVHGVFDILAEKREAAAQKG------LKIYESYEAVL 61
Query: 71 DSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDIL 130
D V+++TPN +H ++ + + K HV+ EKP+ T D ++D A KR +
Sbjct: 62 ADEKVDAVLIATPNDSHKELAISALEAGK--HVVCEKPVTMTSEDLLAIMDVA-KRVNKH 118
Query: 131 VQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVE 190
V R+ + ++ + +IG++ + R H + DW + GG +++
Sbjct: 119 FMVHQNRRWDEDFLIIKEMFEQKTIGEMFHLESRVHGANGI--PGDWRHLKAHGGGMVLD 176
Query: 191 KCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYV-IVEFENGSRGM 249
H D + V SN V A+ + + D +D+ +V + FENG
Sbjct: 177 WGVHLLDQLLFLVDSNVKSVSANLSFALG-----------DEVDDGFVTFITFENGITAQ 225
Query: 250 LDL 252
+++
Sbjct: 226 IEV 228
>pdb|3M2T|A Chain A, The Crystal Structure Of Dehydrogenase From
Chromobacterium Violaceum
pdb|3M2T|B Chain B, The Crystal Structure Of Dehydrogenase From
Chromobacterium Violaceum
Length = 359
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 19/211 (9%)
Query: 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
+K G++G+G +E+ + L+ Q + +V D L+ ++ + + D P V
Sbjct: 6 IKVGLVGIGAQXQENLLP-SLLQXQDIRIVAACDSDLERARRVHRFIS--DIP--VLDNV 60
Query: 67 QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
L+ D VV + P H++ ++ K +V VEKP C T+ + + ++DAAR R
Sbjct: 61 PAXLNQVPLDAVVXAGPPQLHFE--XGLLAXSKGVNVFVEKPPCATLEELETLIDAAR-R 117
Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREH----RFPFLVKVNDWNRFNE 182
D++ VG +++ PV +L + + G+ + + + R P W +
Sbjct: 118 SDVVSGVGXNFKFARPVRQLREXTQVDEFGETLHIQLNHYANKPRAPL------WG-LDS 170
Query: 183 NTGGTLVEKCCHFFDLMRLFVGSNPMRVMAS 213
L+ + H DL F RV +S
Sbjct: 171 TLRSFLLAQAIHTIDLAITFGDGELRRVQSS 201
>pdb|1RYD|A Chain A, Crystal Structure Of Glucose-Fructose Oxidoreductase From
Zymomonas Mobilis
pdb|1RYD|B Chain B, Crystal Structure Of Glucose-Fructose Oxidoreductase From
Zymomonas Mobilis
pdb|1RYE|A Chain A, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
pdb|1RYE|B Chain B, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
pdb|1RYE|C Chain C, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
pdb|1RYE|D Chain D, Crystal Structure Of The Shifted Form Of The
Glucose-Fructose Oxidoreductase From Zymomonas Mobilis
Length = 387
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 76 DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL 135
D V + PN H + + K HV+ EKP+ T+VADC++++DAA+ L+ +G
Sbjct: 106 DAVYIILPNSLHAEFAIRAFKAGK--HVMCEKPMATSVADCQRMIDAAKAANKKLM-IGY 162
Query: 136 EYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVND----WN-RFNENTGGTLVE 190
Y P +++++ +G++ MV ++ ND W R GG+L++
Sbjct: 163 RCHYDPMNRAAVKLIRENQLGKLGMVTTDNSD---VMDQNDPAQQWRLRRELAGGGSLMD 219
Query: 191 KCCHFFDLMRLFVGSNPMRVMASGAVDVN 219
+ + R +G P+ V A D N
Sbjct: 220 IGIYGLNGTRYLLGEEPIEVRAYTYSDPN 248
>pdb|1OFG|A Chain A, Glucose-Fructose Oxidoreductase
pdb|1OFG|B Chain B, Glucose-Fructose Oxidoreductase
pdb|1OFG|C Chain C, Glucose-Fructose Oxidoreductase
pdb|1OFG|D Chain D, Glucose-Fructose Oxidoreductase
pdb|1OFG|E Chain E, Glucose-Fructose Oxidoreductase
pdb|1OFG|F Chain F, Glucose-Fructose Oxidoreductase
Length = 381
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 76 DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL 135
D V + PN H + + K HV+ EKP+ T+VADC++++DAA+ L+ +G
Sbjct: 100 DAVYIILPNSLHAEFAIRAFKAGK--HVMCEKPMATSVADCQRMIDAAKAANKKLM-IGY 156
Query: 136 EYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVND----WN-RFNENTGGTLVE 190
Y P +++++ +G++ MV ++ ND W R GG+L++
Sbjct: 157 RCHYDPMNRAAVKLIRENQLGKLGMVTTDNSD---VMDQNDPAQQWRLRRELAGGGSLMD 213
Query: 191 KCCHFFDLMRLFVGSNPMRVMASGAVDVN 219
+ + R +G P+ V A D N
Sbjct: 214 IGIYGLNGTRYLLGEEPIEVRAYTYSDPN 242
>pdb|2GLX|A Chain A, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|B Chain B, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|C Chain C, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|D Chain D, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|E Chain E, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
pdb|2GLX|F Chain F, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase
Length = 332
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 101/240 (42%), Gaps = 21/240 (8%)
Query: 8 KYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQ 67
++G+IG + RE I +R+ G VV + + R A N K +
Sbjct: 2 RWGLIGASTIAREWVIGA--IRATGGEVVSMMSTSAE-RGAAYATENGIG---KSVTSVE 55
Query: 68 ELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRP 127
EL+ D V VST N H + + I K HVL EKPL T+ D +++V AAR+
Sbjct: 56 ELVGDPDVDAVYVSTTNELHREQTLAAIRAGK--HVLCEKPLAMTLEDAREMVVAARE-A 112
Query: 128 DILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFL-VKVNDWN-RFNENTG 185
+++ R + + G IG + +A R +L + W E G
Sbjct: 113 GVVLGTNHHLRNAAAHRAMRDAIAEGRIG--RPIAARVFHAVYLPPHLQGWRLERPEAGG 170
Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEFENG 245
G +++ H D +R + +P AV ++H M GK + D ++ F++G
Sbjct: 171 GVILDITVHDADTLRFVLNDDPAE-----AVAISHSAGM--GK-EGVEDGVMGVLRFQSG 222
>pdb|3MOI|A Chain A, The Crystal Structure Of The Putative Dehydrogenase From
Bordetella Bronchiseptica Rb50
Length = 387
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/263 (22%), Positives = 116/263 (44%), Gaps = 18/263 (6%)
Query: 7 VKYGIIGMGMMGREHFINL--HHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP 64
+++GI G+G G HH +Q +V DP+ R++ K ++ + VF
Sbjct: 3 IRFGICGLGFAGSVLMAPAMRHHPDAQ---IVAACDPNEDVRERFGK-----EYGIPVFA 54
Query: 65 GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR 124
E++ D V +++P+ H + ++ + H++VEKPL + + ++++A
Sbjct: 55 TLAEMMQHVQMDAVYIASPHQFHCEHVVQASE--QGLHIIVEKPLTLSRDEADRMIEAV- 111
Query: 125 KRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENT 184
+R + + VG + P V L IV+ GS+G+V M+ + FL + + +
Sbjct: 112 ERAGVHLVVGTSRSHDPVVRTLRAIVQEGSVGRVSMLNCFNY-TDFLYRPRRPEELDTSK 170
Query: 185 GGTLV-EKCCHFFDLMRLFVGSNPMRVMA-SGAVDVNHKDEMYNGKVPDIIDNAYVIVEF 242
GG ++ + H D ++ G V A +G +D E + + D A ++ +
Sbjct: 171 GGGIIYNQLPHQIDSIKTITGQRITAVRAMTGRLDPKRPTEGNCAAMLTLEDGACAVMVY 230
Query: 243 ENGSRGMLDLCMF--AEGSKNEQ 263
D F AEG + +Q
Sbjct: 231 SGYDHFDSDEMHFWLAEGGRAKQ 253
>pdb|3GDO|A Chain A, Crystal Structure Of Putative Oxidoreductase Yvaa From
Bacillus Subtilis
pdb|3GDO|B Chain B, Crystal Structure Of Putative Oxidoreductase Yvaa From
Bacillus Subtilis
Length = 358
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 86/374 (22%), Positives = 161/374 (43%), Gaps = 44/374 (11%)
Query: 5 DTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKV 62
DT+K GI+G G+ G H L L +S + + SR + +K D+P +V
Sbjct: 4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKI------MTSRTEEVKR----DFPDAEV 53
Query: 63 FPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA 122
+E+ + ++V+V+TP+ HY+ M I K HV++EKP+ T + + + A
Sbjct: 54 VHELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGK--HVVMEKPMTATAEEGETLKRA 111
Query: 123 ARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNE 182
A ++ +L+ V R+ + +++ GS+ + + +R+ V+ W
Sbjct: 112 ADEK-GVLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQVSYNRYRPEVQAR-WREKEG 169
Query: 183 NTGGTLVEKCCHFFD-LMRLF-----VGSNPMRVMASG-AVDVNHKDEMYNGKVPDIIDN 235
GTL + H D + LF V +N M + VD H Y GK+ I+
Sbjct: 170 TATGTLYDLGSHIIDQTLHLFGMPKAVTANVMAQRENAETVDYFHLTLDY-GKLQAILYG 228
Query: 236 AYVIVEFENGSRGML---DLCMFAEGSKNEQEIVVVGNTGKGEAF---VPESIVRFATRE 289
++ NG R + D G +++ + G + +++ VPE + T
Sbjct: 229 GSIVP--ANGPRYQIHGKDSSFIKYGIDGQEDALRAGRKPEDDSWGADVPEFYGKLTTIR 286
Query: 290 AGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGV 349
+ +T+ + + SYL + ++ +GA +P V ++G+ + I
Sbjct: 287 GSDKKTETIPSVN-----------GSYLTYYRKIAESIREGAALP-VTAEEGINVIRIIE 334
Query: 350 AAQLSIEKGRFIAI 363
AA S ++ R I +
Sbjct: 335 AAMESSKEKRTIML 348
>pdb|3GFG|A Chain A, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|B Chain B, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|C Chain C, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|D Chain D, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|E Chain E, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|F Chain F, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|G Chain G, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|H Chain H, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|I Chain I, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|J Chain J, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|K Chain K, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
pdb|3GFG|L Chain L, Structure Of Putative Oxidoreductase Yvaa From Bacillus
Subtilis In Triclinic Form
Length = 367
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/374 (22%), Positives = 161/374 (43%), Gaps = 44/374 (11%)
Query: 5 DTVKYGIIGMGMMGRE-HFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-LKV 62
DT+K GI+G G+ G H L L +S + + SR + +K D+P +V
Sbjct: 13 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKI------MTSRTEEVKR----DFPDAEV 62
Query: 63 FPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA 122
+E+ + ++V+V+TP+ HY+ M I K HV++EKP+ T + + + A
Sbjct: 63 VHELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGK--HVVMEKPMTATAEEGETLKRA 120
Query: 123 ARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNE 182
A ++ +L+ V R+ + +++ GS+ + + +R+ V+ W
Sbjct: 121 ADEK-GVLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQVSYNRYRPEVQAR-WREKEG 178
Query: 183 NTGGTLVEKCCHFFD-LMRLF-----VGSNPMRVMASG-AVDVNHKDEMYNGKVPDIIDN 235
GTL + H D + LF V +N M + VD H Y GK+ I+
Sbjct: 179 TATGTLYDLGSHIIDQTLHLFGMPKAVTANVMAQRENAETVDYFHLTLDY-GKLQAILYG 237
Query: 236 AYVIVEFENGSRGML---DLCMFAEGSKNEQEIVVVGNTGKGEAF---VPESIVRFATRE 289
++ NG R + D G +++ + G + +++ VPE + T
Sbjct: 238 GSIVP--ANGPRYQIHGKDSSFIKYGIDGQEDALRAGRKPEDDSWGADVPEFYGKLTTIR 295
Query: 290 AGREDVQTLKAEDDRIEYEGLHHGSSYLEHLNFLSAIRAKGAKVPAVDLQDGLISVAIGV 349
+ +T+ + + SYL + ++ +GA +P V ++G+ + I
Sbjct: 296 GSDKKTETIPSVN-----------GSYLTYYRKIAESIREGAALP-VTAEEGINVIRIIE 343
Query: 350 AAQLSIEKGRFIAI 363
AA S ++ R I +
Sbjct: 344 AAMESSKEKRTIML 357
>pdb|4H3V|A Chain A, Crystal Structure Of Oxidoreductase Domain Protein From
Kribbella Flavida
pdb|4H3V|B Chain B, Crystal Structure Of Oxidoreductase Domain Protein From
Kribbella Flavida
Length = 390
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 99/229 (43%), Gaps = 30/229 (13%)
Query: 67 QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
+ LL+ +V V TP +H +I + + K HVL EKPL TVA+ + AA K
Sbjct: 68 RTLLERDDVQLVDVCTPGDSHAEIAIAALEAGK--HVLCEKPLANTVAEAEAXAAAAAKA 125
Query: 127 P--DILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV-------AIREHRFPFLVKVNDW 177
I VG YR +P +A ++V G IG V+ V I + P +++
Sbjct: 126 AAGGIRSXVGFTYRRVPAIALARKLVADGKIGTVRHVRAQYLQDWIADPEAPLSWRLDK- 184
Query: 178 NRFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDV----NHKDEMYNG------ 227
++ G L + H DL + G V SG ++ K E ++G
Sbjct: 185 ---DKAGSGALGDIGAHIVDLTQFITGDRIAEV--SGRLETFVKERPKPEAHSGLSGTAS 239
Query: 228 --KVPDIIDNAYV-IVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGK 273
+ P +D+A V + F G+ G+ + FA G KN I + G+ G
Sbjct: 240 AERGPVTVDDAAVFLATFRGGALGVFEATRFATGRKNAIRIEINGSKGS 288
>pdb|3V2U|A Chain A, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
pdb|3V2U|B Chain B, Crystal Structure Of The Yeast Gal Regulon Complex Of The
Repressor, Gal80p, And The Transducer, Gal3p, With
Galactose And Atp
Length = 438
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 7 VKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ---QALKLANAFDWP 59
++ G +G+ G + H+ + L SQ + + P +++ Q LKL+NA
Sbjct: 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQ-FQITALYSPKIETSIATIQRLKLSNA---- 75
Query: 60 LKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDII----NHPKPHHVLVEKPLCTTVAD 115
FP + S D++V++ +HY+++M ++ N+P ++ VE L ++
Sbjct: 76 -TAFPTLESFASSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQ 134
Query: 116 CKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI 163
+ + AA +R + + L+ R P + + +++ G IG + + I
Sbjct: 135 AESIYKAAAER-GVQTIISLQGRKSPYILRAKELISQGYIGDINSIEI 181
>pdb|3BTS|A Chain A, Crystal Structure Of A Ternary Complex Of The
Transcriptional Repressor Gal80p (Gal80s0 [g301r]) And
The Acidic Activation Domain Of Gal4p (Aa 854-874) From
Saccharomyces Cerevisiae With Nad
pdb|3BTS|B Chain B, Crystal Structure Of A Ternary Complex Of The
Transcriptional Repressor Gal80p (Gal80s0 [g301r]) And
The Acidic Activation Domain Of Gal4p (Aa 854-874) From
Saccharomyces Cerevisiae With Nad
pdb|3BTV|A Chain A, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S0)-[g301r]
pdb|3BTV|B Chain B, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S0)-[g301r]
Length = 438
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 7 VKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ---QALKLANAFDWP 59
++ G +G+ G + H+ + L SQ + + P +++ Q LKL+NA
Sbjct: 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQ-FQITALYSPKIETSIATIQRLKLSNA---- 75
Query: 60 LKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDII----NHPKPHHVLVEKPLCTTVAD 115
FP + S D++V++ +HY+++M ++ N+P ++ VE L ++
Sbjct: 76 -TAFPTLESFASSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQ 134
Query: 116 CKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI 163
+ + AA +R + + L+ R P + + +++ G IG + + I
Sbjct: 135 AESIYKAAAER-GVQTIISLQGRKSPYILRAKELISQGYIGDINSIEI 181
>pdb|3BTU|A Chain A, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|B Chain B, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|C Chain C, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|D Chain D, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|E Chain E, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
pdb|3BTU|F Chain F, Crystal Structure Of The Super-Repressor Mutant Of Gal80p
From Saccharomyces Cerevisiae; Gal80(S2) [e351k]
Length = 438
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 7 VKYGIIGM----GMMGREHFINLHHLRSQGVSVVCIADPHLQSRQ---QALKLANAFDWP 59
++ G +G+ G + H+ + L SQ + + P +++ Q LKL+NA
Sbjct: 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQ-FQITALYSPKIETSIATIQRLKLSNA---- 75
Query: 60 LKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDII----NHPKPHHVLVEKPLCTTVAD 115
FP + S D++V++ +HY+++M ++ N+P ++ VE L ++
Sbjct: 76 -TAFPTLESFASSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQ 134
Query: 116 CKKVVDAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI 163
+ + AA +R + + L+ R P + + +++ G IG + + I
Sbjct: 135 AESIYKAAAER-GVQTIISLQGRKSPYILRAKELISQGYIGDINSIEI 181
>pdb|3DTY|A Chain A, Crystal Structure Of An Oxidoreductase From Pseudomonas
Syringae
pdb|3DTY|B Chain B, Crystal Structure Of An Oxidoreductase From Pseudomonas
Syringae
pdb|3DTY|D Chain D, Crystal Structure Of An Oxidoreductase From Pseudomonas
Syringae
pdb|3DTY|E Chain E, Crystal Structure Of An Oxidoreductase From Pseudomonas
Syringae
Length = 398
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 92/225 (40%), Gaps = 30/225 (13%)
Query: 67 QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
QE + V ++TPN THY I + HV+ EKPLC TV + + + + K
Sbjct: 78 QEARRADGIQAVSIATPNGTHYSITKAALE--AGLHVVCEKPLCFTVEQAENLRELSHKH 135
Query: 127 PDILVQVGLEYRYMPP--VAKLIQIVKSGSIGQVKMV----AIREHRFPFLV--KVNDWN 178
I VG+ Y Y + + + + +G +G V+ V A H P + W
Sbjct: 136 NRI---VGVTYGYAGHQLIEQAREXIAAGELGDVRXVHXQFAHGFHSAPVEAQSQATQWR 192
Query: 179 RFNENTGGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVN------HKDEMYNGKVPDI 232
G + V D VG++P+ + D+ + + P +
Sbjct: 193 VDPRQAGPSYV-----LGD-----VGTHPLYLSEVXLPDLKIKRLXCSRQSFVASRAP-L 241
Query: 233 IDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGKGEAF 277
DNAY + E+E G+ G + GS + Q+I V+G+ E +
Sbjct: 242 EDNAYTLXEYEGGAXGXVWSSAVNAGSXHGQKIRVIGSRASLEWW 286
>pdb|4HKT|A Chain A, Crystal Structure Of A Putative Myo-Inositol Dehydrogenase
From Sinorhizobium Meliloti 1021 (Target Psi-012312)
pdb|4HKT|B Chain B, Crystal Structure Of A Putative Myo-Inositol Dehydrogenase
From Sinorhizobium Meliloti 1021 (Target Psi-012312)
pdb|4HKT|C Chain C, Crystal Structure Of A Putative Myo-Inositol Dehydrogenase
From Sinorhizobium Meliloti 1021 (Target Psi-012312)
pdb|4HKT|D Chain D, Crystal Structure Of A Putative Myo-Inositol Dehydrogenase
From Sinorhizobium Meliloti 1021 (Target Psi-012312)
Length = 331
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 14/142 (9%)
Query: 78 VVVSTPNMTHYQILMDIINHPKPHHVLVEKPL---CTTVADCKKVVDAARKRPDILVQVG 134
VV+ TP TH ++ K + EKP+ V C KVV + + + VG
Sbjct: 67 VVICTPTDTHADLIERFARAGKA--IFCEKPIDLDAERVRACLKVVSDTKAK----LXVG 120
Query: 135 LEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGGTLVEKCCH 194
R+ P + + + G IG+V+ V I R P V+ R +GG + H
Sbjct: 121 FNRRFDPHFXAVRKAIDDGRIGEVEXVTI-TSRDPSAPPVDYIKR----SGGIFRDXTIH 175
Query: 195 FFDLMRLFVGSNPMRVMASGAV 216
FD R +G P+ V A+ AV
Sbjct: 176 DFDXARFLLGEEPVSVTATAAV 197
>pdb|3FHL|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Bacteroides Fragilis Nctc 9343
pdb|3FHL|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Bacteroides Fragilis Nctc 9343
pdb|3FHL|C Chain C, Crystal Structure Of A Putative Oxidoreductase From
Bacteroides Fragilis Nctc 9343
pdb|3FHL|D Chain D, Crystal Structure Of A Putative Oxidoreductase From
Bacteroides Fragilis Nctc 9343
Length = 362
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 67 QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
+EL + D++VV+TP+ THY+ + K +V+VEKP +T ++++ A+K+
Sbjct: 58 KELTEDPEIDLIVVNTPDNTHYEYAGMALEAGK--NVVVEKPFTSTTKQGEELIALAKKK 115
Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGG 186
+++ V R+ + I+ +G++ R+ +K N W E+ GG
Sbjct: 116 -GLMLSVYQNRRWDADFLTVRDILAKSLLGRLVEYESTFARYRNFIKPNTWKETGESGGG 174
Query: 187 TLVEKCCHFFD 197
H D
Sbjct: 175 LTYNLGSHLID 185
>pdb|3EVN|A Chain A, Crystal Structure Of Putative Oxidoreductase From
Streptococcus Agalactiae 2603vR
Length = 329
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 84/182 (46%), Gaps = 11/182 (6%)
Query: 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGH 66
V+YG++ + FI L G VV ++ L+S Q AN + P K +
Sbjct: 6 VRYGVVSTAKVA-PRFIEGVRLAGNG-EVVAVSSRTLESAQ---AFANKYHLP-KAYDKL 59
Query: 67 QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
+++L DV+ V+T N HY++ + K HVLVEKP T ++ A +
Sbjct: 60 EDMLADESIDVIYVATINQDHYKVAKAALLAGK--HVLVEKPFTLTYDQANELF-ALAES 116
Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENTGG 186
++ + + ++P + +++ SG IG+V ++ +P + V W R E GG
Sbjct: 117 CNLFLMEAQKSVFIPMTQVIKKLLASGEIGEVISIS-STTAYPNIDHVT-WFRELELGGG 174
Query: 187 TL 188
T+
Sbjct: 175 TV 176
>pdb|3E82|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|D Chain D, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
pdb|3E82|E Chain E, Crystal Structure Of A Putative Oxidoreductase From
Klebsiella Pneumoniae
Length = 364
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 15/202 (7%)
Query: 3 ANDTVKYGIIGMGMMGREHFINLHHLRS-QGVSVVCIADPHLQSRQQALKLANAFDWPLK 61
+N+T+ +IG G +G+ L +RS G+++ +A SR + + D +
Sbjct: 4 SNNTINIALIGYGFVGKTFHAPL--IRSVPGLNLAFVA-----SRDEEKVKRDLPD--VT 54
Query: 62 VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
V + + D+VV+++PN TH + +N K HV+V+KP + ++++
Sbjct: 55 VIASPEAAVQHPDVDLVVIASPNATHAPLARLALNAGK--HVVVDKPFTLDXQEARELIA 112
Query: 122 AARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFN 181
A ++ +L V R+ + Q+++ G++G VK RF V+V W N
Sbjct: 113 LAEEKQRLL-SVFHNRRWDSDYLGIRQVIEQGTLGAVKHFESHFDRFRPEVRVR-WREQN 170
Query: 182 ENTGGTLVEKCCHFFD-LMRLF 202
G + H D ++LF
Sbjct: 171 VPGSGLWFDLGPHLIDQALQLF 192
>pdb|3UUW|A Chain A, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile.
pdb|3UUW|B Chain B, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile.
pdb|3UUW|C Chain C, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile.
pdb|3UUW|D Chain D, 1.63 Angstrom Resolution Crystal Structure Of
Dehydrogenase (Mvim) From Clostridium Difficile
Length = 308
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 71/139 (51%), Gaps = 11/139 (7%)
Query: 3 ANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKV 62
A +K G+IG+G + ++ ++ + +S+ V P+ R++ D+ +
Sbjct: 3 AMKNIKMGMIGLGSIAQKAYLPIL-TKSERFEFVGAFTPNKVKREKICS-----DYRIMP 56
Query: 63 FPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDA 122
F + L CD + + + THY+I+ ++N HV V+KPL +TV+ +++++
Sbjct: 57 FDSIESLAKK--CDCIFLHSSTETHYEIIKILLNLGV--HVYVDKPLASTVSQGEELIEL 112
Query: 123 ARKRPDILVQVGLEYRYMP 141
+ K+ ++ + VG R+ P
Sbjct: 113 STKK-NLNLMVGFNRRFCP 130
>pdb|3KUX|A Chain A, Structure Of The Ypo2259 Putative Oxidoreductase From
Yersinia Pestis
Length = 352
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 82/203 (40%), Gaps = 15/203 (7%)
Query: 2 AANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWP-L 60
A D +K G++G G + H G + +A S A K+ DWP +
Sbjct: 3 AXADKIKVGLLGYGYASK----TFHAPLIXGTPGLELAG---VSSSDASKVHA--DWPAI 53
Query: 61 KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
V Q L + D++V+ TPN TH+ + + K HV+V+KP T++ +
Sbjct: 54 PVVSDPQXLFNDPSIDLIVIPTPNDTHFPLAQSALAAGK--HVVVDKPFTVTLSQANALK 111
Query: 121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRF 180
+ A +L+ V R+ L ++ GS+G V R+ ++ W
Sbjct: 112 EHADDA-GLLLSVFHNRRWDSDFLTLKTLLAEGSLGNVVYFESHFDRYRPEIR-QRWREQ 169
Query: 181 NENTGGTLVEKCCHFFD-LMRLF 202
GG + H D ++LF
Sbjct: 170 AGAGGGIWYDLGPHLLDQALQLF 192
>pdb|3HNP|A Chain A, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|B Chain B, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|C Chain C, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|D Chain D, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|E Chain E, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
pdb|3HNP|F Chain F, Crystal Structure Of An Oxidoreductase From Bacillus
Cereus. Northeast Structural Genomics Consortium Target
Id Bcr251
Length = 353
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 68 ELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRP 127
ELL+ VV + TP THY++ +I K V+VEKP C TV K+++ R++
Sbjct: 59 ELLNDKEIQVVTICTPAHTHYELAKKVILAGKS--VIVEKPFCDTVEHAKELLALGREK- 115
Query: 128 DILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREH 166
++V R+ + Q+V+ G +G + + I H
Sbjct: 116 GVVVMPYQNRRFDGDFLAVKQVVEQGFLGDI--IEIESH 152
>pdb|4FB5|A Chain A, Crystal Structure Of A Probable Oxidoreduxtase Protein
pdb|4FB5|B Chain B, Crystal Structure Of A Probable Oxidoreduxtase Protein
Length = 393
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 67/155 (43%), Gaps = 4/155 (2%)
Query: 10 GIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPL-KVFPGHQE 68
G+IG G G+ H + + +++ V HL L A A ++ K +
Sbjct: 29 GLIGTGYXGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRA 88
Query: 69 LLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPD 128
L+ DVV V+TPN H + + + K HV EKP AD ++ + A +R
Sbjct: 89 LIADPEVDVVSVTTPNQFHAEXAIAALEAGK--HVWCEKPXAPAYADAERXL-ATAERSG 145
Query: 129 ILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAI 163
+ +G Y P + ++V G IG+V V +
Sbjct: 146 KVAALGYNYIQNPVXRHIRKLVGDGVIGRVNHVRV 180
>pdb|1TLT|A Chain A, Crystal Structure Of A Putative Oxidoreductase (Virulence
Factor Mvim Homolog)
pdb|1TLT|B Chain B, Crystal Structure Of A Putative Oxidoreductase (Virulence
Factor Mvim Homolog)
Length = 319
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 76/156 (48%), Gaps = 24/156 (15%)
Query: 7 VKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQ-----SRQQALKLANAFDWPLK 61
++ G++G+G + ++ ++ + + +D LQ +R +AL + + W +
Sbjct: 6 LRIGVVGLGGIAQKAWLPV---------LAAASDWTLQGAWSPTRAKALPICES--WRIP 54
Query: 62 VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
L S CD V V + +H+ ++ ++N HV V+KPL + D +++V+
Sbjct: 55 YADSLSSLAAS--CDAVFVHSSTASHFDVVSTLLNAGV--HVCVDKPLAENLRDAERLVE 110
Query: 122 -AARKRPDILVQVGLEYRYMPPVAKL-IQIVKSGSI 155
AARK+ + + VG R+ P +L Q+ + S+
Sbjct: 111 LAARKK--LTLMVGFNRRFAPLYGELKTQLATAASL 144
>pdb|3FD8|A Chain A, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3FD8|B Chain B, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3FD8|C Chain C, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3FD8|D Chain D, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3FD8|E Chain E, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3FD8|F Chain F, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
Length = 359
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Query: 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
TVK G IG G + + +R + + V I D H+ + A ++ +
Sbjct: 4 TVKXGFIGFGKSANRYHLPYVXIR-ETLEVKTIFDLHVNEKAAAPFKEKGVNFTADL--- 59
Query: 66 HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
ELL +++ + TP THY + I K V+VEKP C T+ +++ ++
Sbjct: 60 -NELLTDPEIELITICTPAHTHYDLAKQAILAGK--SVIVEKPFCDTLEHAEELFALGQE 116
Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV 161
+ ++V R+ Q+V+ G +G++ V
Sbjct: 117 K-GVVVXPYQNRRFDGDYLAXKQVVEQGFLGEINEV 151
>pdb|1YDW|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At4g09670
pdb|1YDW|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At4g09670
pdb|2Q4E|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At4g09670
pdb|2Q4E|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At4g09670
Length = 362
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 7/161 (4%)
Query: 2 AANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLK 61
A ++ G+ G + R+ +H + ++ +A L+ + +A AN + K
Sbjct: 2 ATETQIRIGVXGCADIARKVSRAIH--LAPNATISGVASRSLE-KAKAFATANNYPESTK 58
Query: 62 VFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVD 121
+ ++ LL+ D + V P H + + K H+L+EKP+ V + K+VD
Sbjct: 59 IHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGK--HILLEKPVAXNVTEFDKIVD 116
Query: 122 AARKRPDILVQVGLEYRYMPPVAKLIQIVK-SGSIGQVKMV 161
A + + G + + P A L + + S GQ+K V
Sbjct: 117 ACEAN-GVQIXDGTXWVHNPRTALLKEFLSDSERFGQLKTV 156
>pdb|3I23|A Chain A, Crystal Structure Of An Oxidoreductase (GfoIDHMOCA FAMILY)
From Enterococcus Faecalis. Northeast Structural
Genomics Consortium Target Id Efr167
pdb|3I23|B Chain B, Crystal Structure Of An Oxidoreductase (GfoIDHMOCA FAMILY)
From Enterococcus Faecalis. Northeast Structural
Genomics Consortium Target Id Efr167
Length = 349
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Query: 6 TVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPG 65
TVK G IG G + + +R + + V I D H+ + A ++ +
Sbjct: 2 TVKXGFIGFGKSANRYHLPYVXIR-ETLEVKTIFDLHVNEKAAAPFKEKGVNFTADL--- 57
Query: 66 HQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARK 125
ELL +++ + TP THY + I K V+VEKP C T+ +++ ++
Sbjct: 58 -NELLTDPEIELITICTPAHTHYDLAKQAILAGK--SVIVEKPFCDTLEHAEELFALGQE 114
Query: 126 RPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMV 161
+ ++V R+ Q+V+ G +G++ V
Sbjct: 115 K-GVVVXPYQNRRFDGDYLAXKQVVEQGFLGEINEV 149
>pdb|3OQB|A Chain A, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|B Chain B, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|C Chain C, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|D Chain D, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|E Chain E, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|F Chain F, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|G Chain G, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
pdb|3OQB|H Chain H, Crystal Structure Of Putative Oxidoreductase From
Bradyrhizobium Japonicum Usda 110
Length = 383
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 108/269 (40%), Gaps = 45/269 (16%)
Query: 6 TVKYGIIGMGMMGREHFINLHHLRS-------QGVSVV----CIADPHL--QSRQQALKL 52
T + G+I G+ GR +N H +RS GV + DP L +S ++ L
Sbjct: 4 TQRLGLIXNGVTGRXG-LNQHLIRSIVAIRDQGGVRLKNGDRIXPDPILVGRSAEKVEAL 62
Query: 53 ANAFD---WPLKVFPGHQELLDSGLCDVVVV-STPNMTHYQILMDIINHPKPHHVLVEKP 108
A F+ W + + D+ D + P + L IN K HV EKP
Sbjct: 63 AKRFNIARWTTDLDAALADKNDTXFFDAATTQARPGL-----LTQAINAGK--HVYCEKP 115
Query: 109 LCTTVADCKKVVDAARKR--PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREH 166
+ T + +VV A + VQ L ++P + K+ + SG G++ V
Sbjct: 116 IATNFEEALEVVKLANSKGVKHGTVQDKL---FLPGLKKIAFLRDSGFFGRILSV---RG 169
Query: 167 RFPFLV--------KVNDWNRFNENTGGTLVEKCCHF-FDLMRLFVGSNPMRVMASGAVD 217
F + V + WN +E+ GG +++ CH+ + L LF N V+ G D
Sbjct: 170 EFGYWVFEGGWQEAQRPSWNYRDEDGGGIILDXVCHWRYVLDNLF--GNVQSVVCIGNTD 227
Query: 218 VNHK-DEMYNGKVPDIIDNAYVIVEFENG 245
+ + DE D+AY + E G
Sbjct: 228 IPERFDEQGKKYKATADDSAYATFQLEGG 256
>pdb|3E9M|A Chain A, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|B Chain B, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|C Chain C, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
pdb|3E9M|D Chain D, Crystal Structure Of An Oxidoreductase From Enterococcus
Faecalis
Length = 330
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 86/222 (38%), Gaps = 11/222 (4%)
Query: 5 DTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANAFDWPLKVFP 64
D ++YGI + L S V IA L++ Q K A P+ +
Sbjct: 4 DKIRYGIXSTAQIVPRFVAGLRE--SAQAEVRGIASRRLENAQ---KXAKELAIPV-AYG 57
Query: 65 GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR 124
++EL D++ + T N HY ++ KP VL+EKP A+ +++ A+
Sbjct: 58 SYEELCKDETIDIIYIPTYNQGHYSAAKLALSQGKP--VLLEKPFTLNAAEAEELFAIAQ 115
Query: 125 KRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENT 184
++ + + + ++P K+ ++ G +G++ V +P + + W E
Sbjct: 116 EQ-GVFLXEAQKSVFLPITQKVKATIQEGGLGEILWVQ-SVTAYPNVDHI-PWFYSREAG 172
Query: 185 GGTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYN 226
GG L + ++ +G V + D N
Sbjct: 173 GGALHGSGSYPLQYLQYVLGKEIQEVTGTATYQQGATDSQCN 214
>pdb|3RBV|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata Incomplex With Nadp
pdb|3RC1|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata Incomplex With Nadp And
Tdp-Benzene
pdb|3RC2|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From
Actinomadura Kijaniata In Complex With Tdp-Benzene And
Nadp; Open Conformation
Length = 350
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 65 GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR 124
G+ LL+ D V V P + H + + + K HVL EKPL T +++ AR
Sbjct: 80 GYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGK--HVLAEKPLTTDRPQAERLFAVAR 137
Query: 125 KRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENT 184
+R +L+ + + P ++ ++ G IG+++ A F K R+ +
Sbjct: 138 ER-GLLLMENFMFLHHPQHRQVADMLDEGVIGEIRSFAA---SFTIPPKPQGDIRYQADV 193
Query: 185 -GGTLVEKCCHFFDLMRLFVGSN 206
GG L++ + LF+G++
Sbjct: 194 GGGALLDIGVYPIRAAGLFLGAD 216
>pdb|3V5N|A Chain A, The Crystal Structure Of Oxidoreductase From Sinorhizobium
Meliloti
pdb|3V5N|B Chain B, The Crystal Structure Of Oxidoreductase From Sinorhizobium
Meliloti
pdb|3V5N|C Chain C, The Crystal Structure Of Oxidoreductase From Sinorhizobium
Meliloti
pdb|3V5N|D Chain D, The Crystal Structure Of Oxidoreductase From Sinorhizobium
Meliloti
Length = 417
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 27/211 (12%)
Query: 76 DVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRPDILVQVGL 135
+ V + TPN HY + + + HV+ +KPL +T+AD KK+ AA + D L +
Sbjct: 112 EAVAIVTPNHVHYAAAKEFLK--RGIHVICDKPLTSTLADAKKLKKAADE-SDALFVLTH 168
Query: 136 EYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLV--------KVNDW--NRFNENTG 185
Y P V + + +++G IG V++V E+ +L K W + G
Sbjct: 169 NYTGYPXVRQAREXIENGDIGAVRLVQX-EYPQDWLTENIEQSGQKQAAWRTDPARSGAG 227
Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMASGAVDVNHKDEMYNGKVPDIIDNAYVIVEF--E 243
G+ + H ++L FV + +A+ D+ D G+ D DNA+V+ F +
Sbjct: 228 GSTGDIGTHAYNLG-CFVSGLELEELAA---DL---DSFVGGRQLD--DNAHVLXRFREK 278
Query: 244 NGSR--GMLDLCMFAEGSKNEQEIVVVGNTG 272
+G+R G L A G +N + V G G
Sbjct: 279 DGTRAKGXLWCSQVAPGHENGLXVRVYGTKG 309
>pdb|3RC7|A Chain A, Crystal Structure Of The Y186f Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 65 GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR 124
G+ LL+ D V V P + H + + + K HVL EKPL T +++ AR
Sbjct: 80 GYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGK--HVLAEKPLTTDRPQAERLFAVAR 137
Query: 125 KRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVA 162
+R +L+ + + P ++ ++ G IG+++ A
Sbjct: 138 ER-GLLLMENFMFLHHPQHRQVADMLDEGVIGEIRSFA 174
>pdb|3RCB|A Chain A, Crystal Structure Of The K102e Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 65 GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR 124
G+ LL+ D V V P + H + + + K HVL E+PL T +++ AR
Sbjct: 80 GYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGK--HVLAEEPLTTDRPQAERLFAVAR 137
Query: 125 KRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENT 184
+R +L+ + + P ++ ++ G IG+++ A F K R+ +
Sbjct: 138 ER-GLLLMENFMFLHHPQHRQVADMLDEGVIGEIRSFAA---SFTIPPKPQGDIRYQADV 193
Query: 185 -GGTLVEKCCHFFDLMRLFVGSN 206
GG L++ + LF+G++
Sbjct: 194 GGGALLDIGVYPIRAAGLFLGAD 216
>pdb|3U3X|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3U3X|D Chain D, Crystal Structure Of A Putative Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3U3X|G Chain G, Crystal Structure Of A Putative Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3U3X|J Chain J, Crystal Structure Of A Putative Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3U3X|M Chain M, Crystal Structure Of A Putative Oxidoreductase From
Sinorhizobium Meliloti 1021
Length = 361
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 4/148 (2%)
Query: 67 QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
+E+L+ ++V + + ++ + H K VLV+KP T+ K+ +
Sbjct: 81 EEILEDENIGLIVSAAVSSERAELAIRAXQHGKD--VLVDKPGXTSFDQLAKLRRVQAET 138
Query: 127 PDILVQVGLEYRYMPPVAKLIQIVKSGSIGQV-KMVAIREHRFPFLVKVNDWNRFNENTG 185
I + E+ P K ++V +G+IG+V +V + HR + DW + G
Sbjct: 139 GRIFSILYSEHFESPATVKAGELVAAGAIGEVVHIVGLGPHRLRRETR-PDWFFRRADYG 197
Query: 186 GTLVEKCCHFFDLMRLFVGSNPMRVMAS 213
G L + H + F G N V+++
Sbjct: 198 GILTDIASHQCEQFLFFTGVNDATVLSA 225
>pdb|3RC9|A Chain A, Crystal Structure Of The K102a Mutant Of Kijd10, A
3-Ketoreductase From Actinomadura Kijaniata In Complex
With Tdp-Benzene And Nadp
Length = 350
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 7/143 (4%)
Query: 65 GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAAR 124
G+ LL+ D V V P + H + + + K HVL E PL T +++ AR
Sbjct: 80 GYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGK--HVLAEAPLTTDRPQAERLFAVAR 137
Query: 125 KRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQVKMVAIREHRFPFLVKVNDWNRFNENT 184
+R +L+ + + P ++ ++ G IG+++ A F K R+ +
Sbjct: 138 ER-GLLLMENFMFLHHPQHRQVADMLDEGVIGEIRSFAA---SFTIPPKPQGDIRYQADV 193
Query: 185 -GGTLVEKCCHFFDLMRLFVGSN 206
GG L++ + LF+G++
Sbjct: 194 GGGALLDIGVYPIRAAGLFLGAD 216
>pdb|2VII|A Chain A, Pspf1-275-mg-amp
Length = 259
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 11 IIGMGMMGREHFIN-LHHL--RSQG--VSVVCIA-DPHLQSRQQALKLANAFDWPLKVFP 64
IIG G+E + LH+L R QG +S+ C A + +L + A AF K P
Sbjct: 34 IIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHP 93
Query: 65 GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL-------CTTVADCK 117
G E D G + ++T M + L+ +I + + V +PL C T AD
Sbjct: 94 GRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLP 153
Query: 118 KVVDAARKRPDILVQVGLEYRYMPPV 143
+V+ R D+L ++ + +PP+
Sbjct: 154 AMVNEGTFRADLLDRLAFDVVQLPPL 179
>pdb|2C9C|A Chain A, Structural Basis Of The Nucleotide Driven Conformational
Changes In The Aaa Domain Of Transcription Activator
Pspf
Length = 265
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 11 IIGMGMMGREHFIN-LHHL--RSQG--VSVVCIA-DPHLQSRQQALKLANAFDWPLKVFP 64
IIG G+E + LH+L R QG +S+ C A + +L + A AF K P
Sbjct: 34 IIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHP 93
Query: 65 GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL-------CTTVADCK 117
G E D G + ++T M + L+ +I + + V +PL C T AD
Sbjct: 94 GRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLP 153
Query: 118 KVVDAARKRPDILVQVGLEYRYMPPV 143
+V+ R D+L ++ + +PP+
Sbjct: 154 AMVNEGTFRADLLDRLAFDVVQLPPL 179
>pdb|2BJW|A Chain A, Pspf Aaa Domain
pdb|2C96|A Chain A, Structural Basis Of The Nucleotide Driven Conformational
Changes In The Aaa Domain Of Transcription Activator
Pspf
pdb|2C98|A Chain A, Structural Basis Of The Nucleotide Driven Conformational
Changes In The Aaa Domain Of Transcription Activator
Pspf
pdb|2C99|A Chain A, Structural Basis Of The Nucleotide Driven Conformational
Changes In The Aaa Domain Of Transcription Activator
Pspf
Length = 265
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 13/146 (8%)
Query: 11 IIGMGMMGREHFIN-LHHL--RSQG--VSVVCIA-DPHLQSRQQALKLANAFDWPLKVFP 64
IIG G+E + LH+L R QG +S+ C A + +L + A AF K P
Sbjct: 34 IIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHP 93
Query: 65 GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL-------CTTVADCK 117
G E D G + ++T M + L+ +I + + V +PL C T AD
Sbjct: 94 GRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLP 153
Query: 118 KVVDAARKRPDILVQVGLEYRYMPPV 143
+V+ R D+L ++ + +PP+
Sbjct: 154 AMVNEGTFRADLLDRLAFDVVQLPPL 179
>pdb|2BJV|A Chain A, Crystal Structure Of Pspf(1-275) R168a Mutant
Length = 265
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 13/146 (8%)
Query: 11 IIGMGMMGREHFIN-LHHL--RSQG--VSVVCIA-DPHLQSRQQALKLANAFDWPLKVFP 64
IIG G+E + LH+L R QG +S+ C A + +L + A AF K P
Sbjct: 34 IIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHP 93
Query: 65 GHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL-------CTTVADCK 117
G E D G + ++T M + L+ +I + + V +PL C T AD
Sbjct: 94 GRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLP 153
Query: 118 KVVDAARKRPDILVQVGLEYRYMPPV 143
+V+ R D+L + + +PP+
Sbjct: 154 AMVNEGTFRADLLDALAFDVVQLPPL 179
>pdb|3C1A|A Chain A, Crystal Structure Of A Putative Oxidoreductase
(Zp_00056571.1) From Magnetospirillum Magnetotacticum
Ms-1 At 1.85 A Resolution
pdb|3C1A|B Chain B, Crystal Structure Of A Putative Oxidoreductase
(Zp_00056571.1) From Magnetospirillum Magnetotacticum
Ms-1 At 1.85 A Resolution
Length = 315
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 21/113 (18%)
Query: 2 AANDTVKYGIIGMGMMGREHFINLHHLRSQGVSVVCIADPHLQSRQQALKLANA-----F 56
A N V+ +IG G G+ + + L G ++V +A S L L
Sbjct: 6 ANNSPVRLALIGAGRWGKNYIRTIAGL--PGAALVRLA----SSNPDNLALVPPGCVIES 59
Query: 57 DWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPL 109
DW + ++ + + V+++TP TH +I + I K VLVEKPL
Sbjct: 60 DW--------RSVVSAPEVEAVIIATPPATHAEITLAAIASGK--AVLVEKPL 102
>pdb|4GQA|A Chain A, Crystal Structure Of Nad Binding Oxidoreductase From
Klebsiella Pneumoniae
pdb|4GQA|B Chain B, Crystal Structure Of Nad Binding Oxidoreductase From
Klebsiella Pneumoniae
pdb|4GQA|C Chain C, Crystal Structure Of Nad Binding Oxidoreductase From
Klebsiella Pneumoniae
pdb|4GQA|D Chain D, Crystal Structure Of Nad Binding Oxidoreductase From
Klebsiella Pneumoniae
Length = 412
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 112/310 (36%), Gaps = 50/310 (16%)
Query: 10 GIIGMGMMGREHFINLHHLRSQGVSVVCIADPHL---------QSRQQALKLANAFDWPL 60
G+IG G G+ H + R+ PHL + + A KL
Sbjct: 30 GLIGSGFXGQAHAD--AYRRAAXFYPDLPKRPHLYALADQDQAXAERHAAKLGAE----- 82
Query: 61 KVFPGHQELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVV 120
K + +EL++ DVV +++PN HY I K HV EKPL +
Sbjct: 83 KAYGDWRELVNDPQVDVVDITSPNHLHYTXAXAAIAAGK--HVYCEKPLAVNEQ-QAQEX 139
Query: 121 DAARKRPDILVQVGLEYRYMPPVAKLIQIVKSGSIGQ-VKMVAIREHRFPFLVKVND--- 176
A +R + V P QI+ G IG+ V+ + F ND
Sbjct: 140 AQAARRAGVKTXVAFNNIKTPAALLAKQIIARGDIGEPVRFRGTFDQGF-----YNDPNL 194
Query: 177 -WN-RFNENTGGT--LVEKCCHFFDLMRLFVGSNPMRVMASGAV-----DVNHKDEMYNG 227
W+ R ++ GG+ L + H + + +G V AS V +D Y
Sbjct: 195 PWSWRCSKTLGGSGALGDLGAHTLSVAQFLLGG-IREVTASAQTCLRQRPVPQRDAGYAS 253
Query: 228 KVP--------DIIDNAYVIVEFENGSRGMLDLCMFAEGSKNEQEIVVVGNTGK----GE 275
+V + D +V F++G+ G+++ A G V G G GE
Sbjct: 254 RVAADAEWREVENDDQVQCLVNFDSGAAGVIEASRIAAGRIFGVFWEVSGTEGTLYXDGE 313
Query: 276 AFVPESIVRF 285
F + RF
Sbjct: 314 RFNELQVYRF 323
>pdb|2H63|A Chain A, Crystal Structure Of Human Biliverdin Reductase A (Casp
Target)
pdb|2H63|B Chain B, Crystal Structure Of Human Biliverdin Reductase A (Casp
Target)
pdb|2H63|C Chain C, Crystal Structure Of Human Biliverdin Reductase A (Casp
Target)
pdb|2H63|D Chain D, Crystal Structure Of Human Biliverdin Reductase A (Casp
Target)
Length = 292
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 67 QELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKR 126
++ L S +V + + + +H + +N K HVLVE P+ ++A +++ + A ++
Sbjct: 56 EDALSSQEVEVAYICSESSSHEDYIRQFLNAGK--HVLVEYPMTLSLAAAQELWELAEQK 113
Query: 127 PDIL 130
+L
Sbjct: 114 GKVL 117
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 258 GSKNEQEIVVVGNTGKGEAFVPESIVR 284
GS++E I++VG TG G++ SI+R
Sbjct: 1 GSRSELRIILVGKTGTGKSAAGNSILR 27
>pdb|1OR4|A Chain A, Crystal Structure Of Hemat Sensor Domain From B.Subtilis
In The Cyano-Liganded Form
pdb|1OR4|B Chain B, Crystal Structure Of Hemat Sensor Domain From B.Subtilis
In The Cyano-Liganded Form
pdb|1OR6|A Chain A, Crystal Structure Of Hemat Sensor Domain From B.Subtilis
In The Unliganded Form
pdb|1OR6|B Chain B, Crystal Structure Of Hemat Sensor Domain From B.Subtilis
In The Unliganded Form
Length = 178
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 31 QGVSVVCIADPHLQSRQQALKLANAFDWPLKVFPGHQELLDSGLCDVVVVSTPNMTHYQI 90
Q + + + + H ++Q LK+ D L V Q L+ + ++V N+ H
Sbjct: 20 QQKNRIQLTNKHADVKKQ-LKMVRLGDAELYVLEQLQPLIQENIVNIVDAFYKNLDHESS 78
Query: 91 LMDIIN 96
LMDIIN
Sbjct: 79 LMDIIN 84
>pdb|3F4L|A Chain A, Crystal Structure Of A Probable Oxidoreductase Yhhx In
Triclinic Form. Northeast Structural Genomics Target
Er647
pdb|3F4L|B Chain B, Crystal Structure Of A Probable Oxidoreductase Yhhx In
Triclinic Form. Northeast Structural Genomics Target
Er647
pdb|3F4L|C Chain C, Crystal Structure Of A Probable Oxidoreductase Yhhx In
Triclinic Form. Northeast Structural Genomics Target
Er647
pdb|3F4L|D Chain D, Crystal Structure Of A Probable Oxidoreductase Yhhx In
Triclinic Form. Northeast Structural Genomics Target
Er647
pdb|3F4L|E Chain E, Crystal Structure Of A Probable Oxidoreductase Yhhx In
Triclinic Form. Northeast Structural Genomics Target
Er647
pdb|3F4L|F Chain F, Crystal Structure Of A Probable Oxidoreductase Yhhx In
Triclinic Form. Northeast Structural Genomics Target
Er647
Length = 345
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 68 ELLDSGLCDVVVVSTPNMTHYQILMDIINHPKPHHVLVEKPLCTTVADCKKVVDAARKRP 127
E+L+ +VVV T +H++ + K +VLVEKP T+A K++ A+ +
Sbjct: 59 EVLNDPDVKLVVVCTHADSHFEYAKRALEAGK--NVLVEKPFTPTLAQAKELFALAKSK- 115
Query: 128 DILVQVGLEYRYMPPVAKLIQIVKSGSIGQV 158
+ V R+ + ++SG +G++
Sbjct: 116 GLTVTPYQNRRFDSCFLTAKKAIESGKLGEI 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,489,570
Number of Sequences: 62578
Number of extensions: 480759
Number of successful extensions: 1369
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1310
Number of HSP's gapped (non-prelim): 65
length of query: 376
length of database: 14,973,337
effective HSP length: 100
effective length of query: 276
effective length of database: 8,715,537
effective search space: 2405488212
effective search space used: 2405488212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)